jimnoneill/paper-to-field-training huggingface dataset:
RAPD and ISSR molecular markers in Olea europaea L.: Genetic variability and molecular cultivar identification

Field: Agricultural and Biological Sciences (Life Sciences)

Thirty Portuguese and eight foreign olive (Olea europaea L.) cultivars were screened using Random Amplified Polymorphic DNA (RAPD) and Inter-Simple Sequence Repeat (ISSR) markers. Twenty RAPD primers amplified 301 reproducible bands of which 262 were polymorphic; and 17 ISSR primers amplified 204 bands of which 180 were polymorphic. The percentage of polymorphic bands detected by ISSR and RAPD was similar (88 and 87%, respectively). The genetic variability observed was similar in the Portuguese and foreign olive cultivars. Seven ISSR and 12 RAPD primers were able to distinguish individually all 38 olive cultivars. Twenty specific molecular markers are now available to be converted into Sequence Characterised Amplified Region (SCAR) markers. Relationships among Portuguese and foreign cultivars is discussed.
[New treatments for atopic dermatitis].

Field: Medicine (Health Sciences)

New treatments for atopic dermatitis Atopic dermatitis is one of the most common skin disorders in Sweden. The pathogenesis is a complex counterplay between a defect skin barrier and an abnormal immune response that can be caused by genetic and/or environmental factors. Atopic dermatitis has a huge negative impact on quality of life. New and more specific treatments are under way and hopefully we will, in the near future, better treat even the more severe cases of atopic dermatitis.
Food‐web energy fluxes, energy transfer efficiency, and diversity respond distinctively to pollution and water diversion in rivers

Field: Environmental Science (Physical Sciences)

Abstract Water diversion and pollution are two pervasive stressors for river ecosystems that often co‐occur. The individual effects of both stressors on river communities and energy transfer across the food webs are well described; however, how they interact remains unknown. We hypothesised that low‐to‐moderate nutrient pollution gradient would cause a mild increase in invertebrate driven herbivory and water diversion a strong reduction in detritivory, whereas their joint effect would reduce invertebrate abundance and diversity, as well as total energy fluxes (from basal resources to invertebrates and fish). We also expected a shift in body size spectra slope with increased energy transfer between trophic levels with moderate pollution, but not with water diversion. To test these hypotheses, we selected four rivers across a range of nutrient pollution levels (a proxy of water quality) subject to similar water diversion schemes and compared food webs upstream and downstream of their diversion weirs. Both stressors changed the availability of basal food resources. Nutrient pollution induced changes in the green food web (i.e., biofilm‐based) by enhancing biofilm stocks, whereas water diversion affected the brown food web (i.e., detritus‐based) by decreasing stocks of detritus. The propagation of the effects to higher trophic levels differed with each stressor: pollution increased the homogeneity of community within the reach, whereas water diversion made communities more heterogeneous. Moreover, pollution induced changes within omnivores, increasing herbivory and carnivory, whereas diversion reduced the total energy fluxes through a decrease in detritivory, especially with pollution. Although most of the variables studied seemed to be more sensitive to water diversion, pollution often accentuated the response, being the interaction between both stressors more explanatory than any of the two stressors on its own. The effects of water diversion on diversity and energy flow through food webs are more detrimental to moderately polluted rivers than to systems with high quality water. We show that the use of tools merging knowledge on trophic relationships among species and their metabolic requirements enables disturbances to be detected that would otherwise go unnoticed.
PCR-RFLP and nucleotide sequencing of neuropeptide Y (NPY) gene in egg type chicken

Field: Agricultural and Biological Sciences (Life Sciences)

In this study, neuropeptide Y gene polymorphism has been investigated in RIR-B and Dahlem red chicken by PCR-RFLP. Two genotypes (AA and BB) created by the presence or absence of a 4bp Dra I site were identified. The genotype amplicons were sequenced and submitted in the Genbank with accession nos. EU447658 and EU447659. The frequency of AA and BB genotypes was 40.0% and 60.0%; 57.9% and 42.1% in RIR-B and Dahlem red, respectively. The analysis of the identified polymorphism with growth and reproduction traits showed that the birds with BB (presence of Dra I site) genotype sexually matured at an early age than the birds with AA genotype (absence of Dra I site) and were found to have higher body weight at 24 weeks of age.
Clinical Features, Diagnosis and Management of Oral Lichen Planus in Children

Field: Dentistry (Health Sciences)

Lichen planus in children is chronic autoimmune diesease, affecting the skin and mucous membrane. An immune mediated pathogenesis is recognized in lichen planus although the exact immunology is unknown. The prevalence of oral lichen planus in children is rare. In this paper, etiopathogenesis, features, management of oral lichen planus is reviewed.
Analysis of geometric factors for an X-ray fluorescence analyzer designed via the Monte Carlo method

Field: Physics and Astronomy (Physical Sciences)

This paper presents a theoretical study on the design of an X-ray fluorescence (XRF) analyzer. The relative geometric positions of the analyzer’s source, detector and specimen are emphasized, which impacts the analyte’s characteristic X-ray fluorescence counts. The theoretical formula for the X-ray fluorescence intensity was derived. The geometric factors (angle and distance) were simulated using Monte Carlo Neutron-Particle Transport Code MCNP5. The Cu’s X-ray characteristic peak counts were calculated. These Monte Carlo model calculations analyzed two types of geometry changes. The best geometric positions for the XRF analyzer had the incident angle for the excitation source (β) equivalent to the exit angle for the specimen’s characteristic X-ray (β). The maximal characteristic X-ray peak counts were obtained when α and β were orthogonal, and the minimum counts were obtained when parallel. To increase the fluorescence counts, the source and detector should be set as close to the specimen as possible. This method and these conclusions can provide technical guidance for designing XRF analyzers.
Assessment of the association between Blastocystis infection and irritable bowel syndrome.

Field: Medicine (Health Sciences)

Blastocystis infection was a common parasitic infection which was predominant in both IBS and control group. The presence of Blastocystis sp. in stool did not imply gastrointestinal symptoms in the IBS patients. Further study of subtype characterization of Blastocystis sp. in a larger sample size of the case-control study might reveal a possible relationship between Blastocystis sp. and IBS patients.
The Changing Dynamics and Roles of New Zealand’s Airports: An Overview

Field: Social Sciences (Social Sciences)

Abstract This chapter has documented the changing roles and dynamics of New Zealand’s airports between 2001 and 2016. New Zealand has well-developed airport systems for both international and domestic air passenger and air freight services. New Zealand airports have experienced marked growth during the study period and growth looks to continue throughout the country. Moreover, New Zealand’s airport system plays a direct role in New Zealand’s air transport and tourism sectors, as well as contributing to other major economic sectors. International and domestic connections to New Zealand airports facilitate the continued growth and importance of tourism, acting as a backbone to the New Zealand economy. In addition to tourism, airports play a crucial role in the facilitation of imports and exports and the development of regional business hubs and supporting activities for New Zealand’s other major industries. Importantly, New Zealand airports are a critical part of its economy and will continue to be so in the decades to come.
A Preliminary Neuroimaging Study of Preschool Children with ADHD

Field: Neuroscience (Life Sciences)

Attention-deficit/hyperactivity disorder (ADHD) is a developmental disorder that, by current definition, has onset prior to age 7 years. MRI studies have provided some insight into brain differences associated with ADHD, but thus far have almost exclusively focused on children ages 7 years and older. To better understand the neurobiological development of ADHD, cortical and subcortical brain development should be systematically examined in younger children presenting with symptoms of the disorder. High-resolution anatomical (MPRAGE) images, acquired on a 3.0T scanner, were analyzed in a total of 26 preschoolers, ages 4-5 years (13 with ADHD, 13 controls, matched on age and sex). The ADHD sample was diagnosed using DSM-IV criteria, and screened for language disorders. Cortical regions were delineated and measured using automated methods in Freesurfer; basal ganglia structures were manually delineated. Children with ADHD showed significantly reduced caudate volumes bilaterally; in contrast there were no significant group differences in cortical volume or thickness in this age range. After controlling for age and total cerebral volume, left caudate volume was a significant predictor of hyperactive/impulsive, but not inattentive symptom severity. Anomalous basal ganglia, particularly caudate, development appears to play an important role among children presenting with early onset symptoms of ADHD.
Prevalence of Persistent Renal Dysfunction in Perinatally HIV-infected Thai Adolescents

Field: Medicine (Health Sciences)

Background: Persistent renal dysfunction (PRD) has been reported in up to 22% of perinatally HIV-infected adolescents (PHAs) in the United States and Europe. There are limited data available on PRD among PHAs in resource-limited settings regarding access to antiretroviral therapy (ART) at more advanced HIV stages. Methods: We retrospectively described the prevalence of PRD and associated factors in a Thai PHA cohort. Inclusion criteria were current age ≥10 years old and at least 2 serum creatinine (Cr) measurements after ART initiation. Cr and urine examination were performed every 6–12 months. PRD was defined as having ≥2 measurements of low estimated glomerular filtration rate (eGFR); either <60 mL/min/1.73 m2 or elevated Cr for age and eGFR 60–89 mL/min/1.73 m2, or proteinuria (dipstick proteinuria ≥1+). Factors associated with PRD were analyzed using a multivariate logistic regression analysis. Results: This study included 255 PHAs with median (interquartile range) age of 16.7 (14.5–18.8) and ART duration of 10.3 (7.1–12.4) years. Fifty-six percentage used boosted protease inhibitor (bPI)–based regimens, and 63% used tenofovir disoproxil fumarate (TDF). The overall PRD prevalence was 14.1% [95% confidence interval (CI): 10.1–19.0]; low eGFR 6.7%, proteinuria 3.5% and both 3.9%. Among 109 users of TDF with bPI, 22.9% had PRD and 2.8% discontinued/adjusted dosing of TDF because of nephrotoxicity. Factors associated with PRD were age 10–15 years old (adjusted odd ratio (aOR): 10.1, 95% CI: 4.1–25.2), male (aOR: 3.2, 95% CI: 1.4–7.7), CD4 nadir <150 cells/mm 3 (aOR: 2.6, 95% CI: 1.1–6.1) and use of TDF with bPI (aOR: 9.6, 95% CI: 3.2–28.9). Conclusions: PRD is common among PHAs. Almost one-fifth of adolescents using TDF with bPI had PRD. These adolescents should be a priority group for renal monitoring.
Stokes Layers in Horizontal-Wave Outer Flows

Field: Engineering (Physical Sciences)

Results are reported of a computational study investigating the responses of flat plate boundary layers and wakes to horizontal wave outer flows. Solutions are obtained for temporal, spatial, and traveling waves using Navier Stokes, boundary layer, and perturbation expansion equations. A wide range of parameters are considered for all the three waves. The results are presented in terms of Stokes-layer overshoots, phase leads (lags), and streaming. The response to the temporal wave showed all the previously reported features. The magnitude and nature of the response are small and simple such that it is essentially a small disturbance on the steady solution. Results are explainable in terms of one parameter ξ (the frequency of oscillation). For the spatial wave, the magnitude and the nature of the response are significantly increased and complex such that it cannot be considered simply a small disturbance on the without-wave solution. The results are explainable in terms of the two parameters λ−1 and x/λ (where λ is the wavelength). A clear asymmetry is observed in the wake response for the spatial wave. An examination of components of the perturbation expansion equations indicates that the asymmetry is a first-order effect due to nonlinear interaction between the steady and first-harmonic velocity components. For the traveling wave, the responses are more complex and an additional parameter, c (the wave speed), is required to explain the results. In general, for small wave speeds the results are similar to a spatial wave, whereas for higher wave speeds the response approaches the temporal wave response. The boundary layer and perturbation expansion solutions compares well with the Navier Stokes solution in their range of validity.
A Theory of Form as Temporal Referentiality

Field: Arts and Humanities (Social Sciences)

This study proposes temporal referentiality—roughly defined as the orientation of substance in its temporal medium—as a theoretical and analytical framework for musical form. Operating on the principle of music as a temporally extended entity, this thesis explores the connections that occur between substance across its medium, suggests an additional interpretation of medium connections (temporality) in terms of language tense, and examines substance connections (referentiality) through different types of filtering.\nI also propose a means for visual and literary interpretation of temporal referentiality, depicting a network of substance relationships established over a piece’s timespace. Analysis of this type assumes a listener’s complete familiarity with the substance in its temporal boundaries. Visual representations portray the amount and strength of future- and past-oriented musical substance at a given point in time, including which sections are connected to one another (medium connection) and which variables or features of sameness are responsible for this connection (substance connection). Employing an analogy between orientation and tense, it also becomes feasible to construct a “model prose composition” with the same temporal referentiality as a piece of music. Finally, a system of filtering serves to isolate portions of medium and substance and to clarify what elements are responsible for the elusive concept of “sameness.” The possibilities for temporal reference analysis are applied to the first movements of Bartók’s Fourth String Quartet and Brahms’s Violin Concerto, as well as Bach’s Contrapunctus #9 from The Art of Fugue and the Variations movement of Webern’s Symphony op. 21.
New Methods to Resisting Punching Shear Stress in Reinforced Concrete Flat Slabs

Field: Engineering (Physical Sciences)

Punching shear failure is a major problem encountered in the design of reinforced concrete flat slabs. The utilization of shear reinforcement via shear studs or other means has become a choice for improving the punching shear capacity. In this study, a new alternative of reinforcement modalities were tested and demonstrated the effect of self-compact concrete on the punching shear capacity, beside that compared between the difference codes to identify the suitable one for determining the position of critical section of punching shear. Nevertheless, in this investigation, the proposed reinforcement system is examined for interior columns only. An experimental work consisting of six specimens: five of them were cast with normal reinforced concrete and one was cast with self-compact strength concrete. The obtained results indicate that the proposed shear reinforcement system has a positive effect in the enhancement of the punching shear capacity of interior slab–column connection of self-compact strength concrete.
Ultrastructure in Transthyretin Amyloidosis: From Pathophysiology to Therapeutic Insights

Field: Medicine (Health Sciences)

Transthyretin (TTR) amyloidosis is caused by systemic deposition of wild-type or variant amyloidogenic TTR (ATTRwt and ATTRv, respectively). ATTRwt amyloidosis has traditionally been termed senile systemic amyloidosis, while ATTRv amyloidosis has been called familial amyloid polyneuropathy. Although ATTRwt amyloidosis has classically been regarded as one of the causes of cardiomyopathy occurring in the elderly population, recent developments in diagnostic techniques have significantly expanded the concept of this disease. For example, this disease is now considered an important cause of carpal tunnel syndrome in the elderly population. The phenotypes of ATTRv amyloidosis also vary depending on the mutation and age of onset. Peripheral neuropathy usually predominates in patients from the conventional endemic foci, while cardiomyopathy or oculoleptomeningeal involvement may also become major problems in other patients. Electron microscopic studies indicate that the direct impact of amyloid fibrils on surrounding tissues leads to organ damage, whereas accumulating evidence suggests that nonfibrillar TTR, such as oligomeric TTR, is toxic, inducing neurodegeneration. Microangiopathy has been suggested to act as an initial lesion, increasing the leakage of circulating TTR. Regarding treatments, the efficacy of liver transplantation has been established for ATTRv amyloidosis patients, particularly patients with early-onset amyloidosis. Recent phase III clinical trials have shown the efficacy of TTR stabilizers, such as tafamidis and diflunisal, for both ATTRwt and ATTRv amyloidosis patients. In addition, a short interfering RNA (siRNA), patisiran, and an antisense oligonucleotide (ASO), inotersen, have been shown to be effective for ATTRv amyloidosis patients. Given their ability to significantly reduce the production of both wild-type and variant TTR in the liver, these gene-silencing drugs seem to be the optimal therapeutic option for ATTR amyloidosis. Hence, the long-term efficacy and tolerability of novel therapies, particularly siRNA and ASO, must be determined to establish an appropriate treatment program.
Legal Imperialism

Field: Social Sciences (Social Sciences)

Legal Imperialism examines the important role of nineteenth-century Western extraterritorial courts in non-Western states. These courts, created as a separate legal system for Western expatriates living in Asian and Islamic countries, developed from the British imperial model, which was founded on ideals of legal positivism. Based on a cross-cultural comparison of the emergence, function, and abolition of these court systems in Japan, the Ottoman Empire, and China, Turan Kayaoglu elaborates a theory of extraterritoriality, comparing the nineteenth-century British example with the post-World War II American legal imperialism. Ultimately, his research provides an innovative basis for understanding the assertion of legal authority by Western powers on foreign soil and the influence of such assertion on ideas about sovereignty.
Arab and Jewish Women in Kentucky

Field: Social Sciences (Social Sciences)

Abstract Arabs and Jews are thought to inhabit the Middle East or urban areas in the United States, not Kentucky or other out of the way locales. Arab and Jewish Women in Kentucky: Stories of Accommodation and Audacity explores the untold accounts of ten Arab and Jewish women who managed in the past and currently their unique identities tending to both their religious/ethnic traditions and acculturating to Kentucky ways. In the details of women's stories, ties between Arabs and Jews not in the Middle East, but middle America, emerge. Common ground surfaces displaying Arab and Jewish women with similar tales of women openly and publicly serving their communities, of mother-daughter relations, of the agility necessitated to work, mother, and be an active community member, and of what it meant to be an Arab and Jewish mother nearly a century ago. Associations materialize in the women's tales, underscoring that lives evolve relationally between generations, mothers and daughters, mothers and sons, aunts and nephews, grandmothers and granddaughters, and within and between communities. Narratives about immigrant groups becoming American traditionally spotlight one group at a time, and not in correspondence to other groups. Through the lens of women's lives, the relational links between Arabs and Jews, individuals and communities, and generations become apparent.
Factors influencing nursing turnover in selected private hospitals in England

Field: Nursing (Health Sciences)

The study investigated factors influencing nursing turnover in selected private hospitals in England as the United Kingdom recruited 57 136 nurses from non-European countries from 1998 till 2003. Herzberg's Theory of Motivation was used to contextualise the research results obtained from 85 completed questionnaires. \n \nIn terms of Herzberg's Theory of Motivation the intrinsic factors (motivators) that could influence nurses' turnover rates were nurses' dissatisfaction with irregular promotions, lack of recognition by doctors, and nurses' lack of autonomy. The extrinsic (hygiene) factors included dissatisfaction with their salaries, and marked dissatisfaction with organization and administration policies and nurses' inability to access information about patient care and about the management of their units. \n \nNurses' turnover rates might be reduced if promotion policies could be consistent, doctors would value nurses' work and if nurses could be more autonomous. Enhanced communication about policies and about accessing information, as well as improved salaries,could contribute to reduced turnover rates among nurses.
Editorial Responsibility for Medical Advertisements

Field: Health Professions (Health Sciences)

DESPITE the distances that separate us and the varying points of view that we may occasionally entertain, it is obvious that a number of problems are common to all. Not the least of these is our editorial responsibility for the character and quality of the advertisements that our journals accept and that are so vital to their prosperity. This problem has given rise to a growing concern because of the tremendous expansion of the pharmaceutical industry in recent years and its resulting pressures, and because of an increasingly uncomfortable awareness of our own ethical obligations in the matter.This impressive . . .
PREPARATION AND STRUCTURE OF THE RUTHENYL COMPLEX, trans-[RuCl(O)(py)4]+

Field: Chemistry (Physical Sciences)

Abstract trans-[RuCl(O)(py)4]+ with RuIV=O (ruthenyl) unit was obtained by the reaction of trans-[RuCl(NO)(py)4]2+ with NaClO. The remarkably long bond distance of Ru–O (1.862(8) Å), compared with those of known mono-oxo complexes, is indicative of its facile reactivity as an oxygen transfer agent.