Dynamics of Systems on the Nanoscale Introduction Atomic and molecular physics methods for nanosystems Multiscale computational modelling of MesoBioNano systems Structure and dynamics of bio and macromolecules Quantum effects in biological systems Dynamics and phase transitions in nanosystems Multiscale modeling of surface deposition processes Multiscale modeling of irradiation driven chemistry processes Multiscale approach for the physics of ion beam cancer therapy Bright crystal based gamma ray light sources Conclusions and outlook. This book presents the structure formation and dynamics of animate and inanimate matter on the nanometre scale. This is a new interdisciplinary field known as Meso Bio Nano (MBN) science that lies at the intersection of physics chemistry biology and material science. Special attention in the book is devoted to investigations of the structure properties and dynamics of complex MBN systems by means of photonic electronic heavy particle and atomic collisions. This includes problems of fusion and fission fragmentation surfaces and interfaces reactivity nanoscale phase and morphological transitions irradiation driven transformations of complex molecular systems collective electron excitations radiation damage and biodamage channeling phenomena and many more. Emphasis in the book is placed on the theoretical and computational physics research advances in these areas and related state of the art experiments. Particular attention in the book is devoted to the utilization of advanced computational techniques and high performance computing in studies of the dynamics of systems.