import pandas as pd import sys if __name__ == '__main__': import glob df_actives = pd.read_parquet(sys.argv[1]) df_decoys = pd.read_parquet(sys.argv[2]) df_actives['active'] = pd.Series([True]*len(df_actives)) df_decoys['active'] = pd.Series([False]*len(df_decoys)) pd.concat([df_actives,df_decoys]).to_parquet(sys.argv[3])