internlm/SWE-Fixer-Train-110K huggingface dataset:
Repository: certbot/certbot

Issue:
We shouldn't be adding a commented out renewal block during the same run as adding an uncommented one when deploying certs with multiple domains



Discussion:

Resolving patch:
diff --git a/certbot-nginx/certbot_nginx/configurator.py b/certbot-nginx/certbot_nginx/configurator.py
--- a/certbot-nginx/certbot_nginx/configurator.py
+++ b/certbot-nginx/certbot_nginx/configurator.py
@@ -30,7 +30,7 @@
 logger = logging.getLogger(__name__)
 
 REDIRECT_BLOCK = [[
-    ['\n    ', 'if', ' ', '($scheme', ' ', '!=', ' ', '"https") '],
+    ['\n    ', 'if', ' ', '($scheme', ' ', '!=', ' ', '"https")'],
     [['\n        ', 'return', ' ', '301', ' ', 'https://$host$request_uri'],
      '\n    ']
 ], ['\n']]


Test patch:
diff --git a/certbot-nginx/certbot_nginx/tests/configurator_test.py b/certbot-nginx/certbot_nginx/tests/configurator_test.py
--- a/certbot-nginx/certbot_nginx/tests/configurator_test.py
+++ b/certbot-nginx/certbot_nginx/tests/configurator_test.py
@@ -429,7 +429,7 @@ def test_redirect_enhance(self):
         # Test that we successfully add a redirect when there is
         # a listen directive
         expected = [
-            ['if', '($scheme', '!=', '"https") '],
+            ['if', '($scheme', '!=', '"https")'],
             [['return', '301', 'https://$host$request_uri']]
         ]
 
@@ -512,6 +512,23 @@ def test_redirect_dont_enhance(self):
         self.assertEqual(mock_logger.info.call_args[0][0],
                 'No matching insecure server blocks listening on port %s found.')
 
+    def test_no_double_redirect(self):
+        # Test that we don't also add the commented redirect if we've just added
+        # a redirect to that vhost this run
+        example_conf = self.config.parser.abs_path('sites-enabled/example.com')
+        self.config.enhance("example.com", "redirect")
+        self.config.enhance("example.org", "redirect")
+
+        unexpected = [
+            ['#', ' Redirect non-https traffic to https'],
+            ['#', ' if ($scheme != "https") {'],
+            ['#', '     return 301 https://$host$request_uri;'],
+            ['#', ' } # managed by Certbot']
+        ]
+        generated_conf = self.config.parser.parsed[example_conf]
+        for line in unexpected:
+            self.assertFalse(util.contains_at_depth(generated_conf, line, 2))
+
     def test_staple_ocsp_bad_version(self):
         self.config.version = (1, 3, 1)
         self.assertRaises(errors.PluginError, self.config.enhance,
Repository: certbot/certbot

Issue:
Nginx plugin not finding HTTP server block it created
## My operating system is (include version):

Ubuntu 16.04

## I installed Certbot with (certbot-auto, OS package manager, pip, etc):

Dev instructions

## I ran this command and it produced this output:

Starting with the default Nginx config on Ubuntu 16.04, I ran:
```
$ sudo certbot -d example.org,www.example.org --nginx --redirect
...
No matching insecure server blocks listening on port 80 found.
No matching insecure server blocks listening on port 80 found.
...
```

## Certbot's behavior differed from what I expected because:
Nginx is listening on port 80 and continuing to serve insecure HTTP traffic for these domains.

Probably what we should do is if no matching server block is found is if Nginx is listening on port 80 at all, we should create new server block(s) for the purpose of redirecting the traffic.

cc @ohemorange 


Discussion:
While we should eventually be creating a separate server block, the actual bug right now is our Nginx plugin is failing to find the server block we created from the default that is listening on both port 80 and 443.
Is this still a problem when you apply #5192?
Yes. I was testing that PR when I came across this.

Resolving patch:
diff --git a/certbot-nginx/certbot_nginx/configurator.py b/certbot-nginx/certbot_nginx/configurator.py
--- a/certbot-nginx/certbot_nginx/configurator.py
+++ b/certbot-nginx/certbot_nginx/configurator.py
@@ -266,7 +266,10 @@ def _vhost_from_duplicated_default(self, domain):
             self.new_vhost.names = set()
 
         self.new_vhost.names.add(domain)
-        name_block = [['\n    ', 'server_name', ' ', ' '.join(self.new_vhost.names)]]
+        name_block = [['\n    ', 'server_name']]
+        for name in self.new_vhost.names:
+            name_block[0].append(' ')
+            name_block[0].append(name)
         self.parser.add_server_directives(self.new_vhost, name_block, replace=True)
         return self.new_vhost
 


Test patch:
diff --git a/certbot-nginx/certbot_nginx/tests/configurator_test.py b/certbot-nginx/certbot_nginx/tests/configurator_test.py
--- a/certbot-nginx/certbot_nginx/tests/configurator_test.py
+++ b/certbot-nginx/certbot_nginx/tests/configurator_test.py
@@ -676,6 +676,13 @@ def test_deploy_no_match_add_redirect(self):
             "example/chain.pem",
             "example/fullchain.pem")
 
+        self.config.deploy_cert(
+            "nomatch.com",
+            "example/cert.pem",
+            "example/key.pem",
+            "example/chain.pem",
+            "example/fullchain.pem")
+
         self.config.enhance("www.nomatch.com", "redirect")
 
         self.config.save()
Repository: certbot/certbot

Issue:
Apache SSL cipher settings are old, no ChaCha20
The Nginx plugin's `options-ssl-nginx.conf` file uses Mozilla's current intermediate SSL cipher configuration.

The Apache plugin probably did too... except it hasn't been updated since 2014: 2faacc1b43786edd5386305f9cffec376b5a5d26

Should Certbot's Apache settings be updated?

The main difference is that the new configuration adds ChaCha20 cipher suites. (It also removes a few things.)

Should this wait until after further documentation/feature improvements in #4830?

If so, how about a stopgap patch to add ChaCha20 without removing anything?

Differences with OpenSSL 1.0.2 or 1.1.0:

* Adds ChaCha20. (Yay!)
* Adds newer 3DES cipher suites with key exchange/signature algorithms other than RSA/RSA. (Probably doesn't matter. Anything that supports ECDHE-ECDSA ought to support a better cipher than 3DES. ) (Edit: Mozilla suggests that EDH-RSA 3DES is useful, though,.)
* Removes AES-CCM. (OpenSSL 1.1. Probably only included inadvertently.)
* Removes Camellia. (Perfectly nice cipher, but everybody uses AES.)
* Removes some static DH and SRP key exchange cipher suites. (Probably only included by accident, mostly or entirely ignored by servers and clients.)
* Changes the order of some things.


Discussion:

Resolving patch:
diff --git a/certbot-apache/certbot_apache/constants.py b/certbot-apache/certbot_apache/constants.py
--- a/certbot-apache/certbot_apache/constants.py
+++ b/certbot-apache/certbot_apache/constants.py
@@ -16,6 +16,8 @@
     '4066b90268c03c9ba0201068eaa39abbc02acf9558bb45a788b630eb85dadf27',
     'f175e2e7c673bd88d0aff8220735f385f916142c44aa83b09f1df88dd4767a88',
     'cfdd7c18d2025836ea3307399f509cfb1ebf2612c87dd600a65da2a8e2f2797b',
+    '80720bd171ccdc2e6b917ded340defae66919e4624962396b992b7218a561791',
+    'c0c022ea6b8a51ecc8f1003d0a04af6c3f2bc1c3ce506b3c2dfc1f11ef931082',
 ]
 """SHA256 hashes of the contents of previous versions of all versions of MOD_SSL_CONF_SRC"""
 


Test patch:
Repository: certbot/certbot

Issue:
Add a message saying we plan to deprecate python2.6
Similarly to how we did it in #5283.

Notes:
- the biggest difference is PendingDeprecationWarning is shown by default in py 2.6 and isn't in py 3.3
- also, while I didn't worry about this for python 3.3 since there were like 7 users, it'd be nice if we printed the warnings in a way that were able to be disabled by the user
- (as for this, I think it would be nice and may be doable (you can set up logging to capture warnings if we wanted to be consistent in where they were sent), but if it's much effort don't worry about it
- we're talking about the LE_PYTHON people and people installing from pip)
- so if someone upgrades, they can see the warning but continue to use it in cron without getting email every 12 hours when certbot renew runs
- probably the warning system is the best way to do this
- it shouldn't be much code, but might take a little research


Discussion:
Related to #2208.

Resolving patch:
diff --git a/acme/acme/__init__.py b/acme/acme/__init__.py
--- a/acme/acme/__init__.py
+++ b/acme/acme/__init__.py
@@ -13,9 +13,10 @@
 import sys
 import warnings
 
-if sys.version_info[:2] == (3, 3):
-    warnings.warn(
-            "Python 3.3 support will be dropped in the next release of "
-            "acme. Please upgrade your Python version.",
-            PendingDeprecationWarning,
-    ) #pragma: no cover
+for (major, minor) in [(2, 6), (3, 3)]:
+    if sys.version_info[:2] == (major, minor):
+        warnings.warn(
+                "Python {0}.{1} support will be dropped in the next release of "
+                "acme. Please upgrade your Python version.".format(major, minor),
+                DeprecationWarning,
+        ) #pragma: no cover
diff --git a/certbot/main.py b/certbot/main.py
--- a/certbot/main.py
+++ b/certbot/main.py
@@ -4,6 +4,7 @@
 import logging.handlers
 import os
 import sys
+import warnings
 
 import configobj
 import josepy as jose
@@ -1217,9 +1218,17 @@ def main(cli_args=sys.argv[1:]):
         # Let plugins_cmd be run as un-privileged user.
         if config.func != plugins_cmd:
             raise
-    if sys.version_info[:2] == (3, 3):
-        logger.warning("Python 3.3 support will be dropped in the next release "
-                    "of Certbot - please upgrade your Python version.")
+    deprecation_fmt = (
+        "Python %s.%s support will be dropped in the next "
+        "release of Certbot - please upgrade your Python version.")
+    # We use the warnings system for Python 2.6 and logging for Python 3
+    # because DeprecationWarnings are only reported by default in Python <= 2.6
+    # and warnings can be disabled by the user.
+    if sys.version_info[:2] == (2, 6):
+        warning = deprecation_fmt % sys.version_info[:2]
+        warnings.warn(warning, DeprecationWarning)
+    elif sys.version_info[:2] == (3, 3):
+        logger.warning(deprecation_fmt, *sys.version_info[:2])
 
     set_displayer(config)
 


Test patch:
Repository: certbot/certbot

Issue:
Link to Let's Encrypt status page from documentation
I'm trying to get https://letsencrypt.status.io/ to show up in a Google search for [[letsencrypt status](https://www.google.com/search?q=letsencrypt+status)]. Right now it tries to correct to our "stats" page.

One thing that would help is to get more links to it. Would Certbot be willing to add a link in the footers of the documentation saying "Let's Encrypt status" and linking to the status page? Thanks!


Discussion:
I think that'd be fine - the reason you want it in the footer is so that it appears on all read the doc pages?
Yep!
I'm happy to do this, but am having a hard time getting sphinx to behave - if you have any knowledge on how to edit sphinx footers, or if you'd be willing to sit down with me and work on this sometime this week that'd be awesome
I don't have any Sphinx experience but I'd be happy to stick our heads together tomorrow afternoon if you're free.

Resolving patch:
diff --git a/docs/conf.py b/docs/conf.py
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -64,7 +64,8 @@
 
 # General information about the project.
 project = u'Certbot'
-copyright = u'2014-2016 - The Certbot software and documentation are licensed under the Apache 2.0 license as described at https://eff.org/cb-license '
+# this is now overridden by the footer.html template
+#copyright = u'2014-2018 - The Certbot software and documentation are licensed under the Apache 2.0 license as described at https://eff.org/cb-license.'
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the


Test patch:
Repository: certbot/certbot

Issue:
Certbot should depend on josepy
As part of the transition of the JOSE library out of acme into josepy, certbot switched to directly importing from josepy -- however, no dependency on it was added in setup.py.  Even though it should always be co-installed by virtue of the transient dependency from acme, if certbot is directly using it, it should be required for install.


Discussion:

Resolving patch:
diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -41,6 +41,7 @@ def read_file(filename, encoding='utf8'):
     'ConfigArgParse>=0.9.3',
     'configobj',
     'cryptography>=1.2',  # load_pem_x509_certificate
+    'josepy',
     'mock',
     'parsedatetime>=1.3',  # Calendar.parseDT
     'pyrfc3339',


Test patch:
Repository: certbot/certbot

Issue:
`acme` module's `client._revoke` sends incorrect `ContentType` header.
[ACME draft-10, section 6.2](https://tools.ietf.org/html/draft-ietf-acme-acme-10#section-6.2) explicitly requires POSTs be sent with a `Content-Type` of `application/jose+json`: 

> Because client requests in ACME carry JWS objects in the Flattened
> JSON Serialization, they must have the "Content-Type" header field
> set to "application/jose+json".  If a request does not meet this
> requirement, then the server MUST return a response with status code
> 415 (Unsupported Media Type).

The good news is that Certbot & the `acme` module already do this in 99.99% of cases :tada: :+1: :balloon: 

The bad news is that `client._revoke` overrides the default (correct) `ContentType` with `none`: https://github.com/certbot/certbot/blob/77fdb4d7d6194989dcc775f2e0ad81b6147c2359/acme/acme/client.py#L231

This will make revocation requests fail in a world where this restriction is enforced (See https://github.com/letsencrypt/boulder/pull/3532) 

There doesn't seem to be a reason to want to override `ContentType` in this case so I believe the fix is to change `_revoke` to use the default.

Thanks!


Discussion:

Resolving patch:
diff --git a/acme/acme/client.py b/acme/acme/client.py
--- a/acme/acme/client.py
+++ b/acme/acme/client.py
@@ -227,8 +227,7 @@ def _revoke(self, cert, rsn, url):
         response = self._post(url,
                               messages.Revocation(
                                 certificate=cert,
-                                reason=rsn),
-                                content_type=None)
+                                reason=rsn))
         if response.status_code != http_client.OK:
             raise errors.ClientError(
                 'Successful revocation must return HTTP OK status')


Test patch:
diff --git a/acme/acme/client_test.py b/acme/acme/client_test.py
--- a/acme/acme/client_test.py
+++ b/acme/acme/client_test.py
@@ -635,8 +635,7 @@ def test_fetch_chain_too_many(self):  # recursive
     def test_revoke(self):
         self.client.revoke(self.certr.body, self.rsn)
         self.net.post.assert_called_once_with(
-            self.directory[messages.Revocation], mock.ANY, content_type=None,
-            acme_version=1)
+            self.directory[messages.Revocation], mock.ANY, acme_version=1)
 
     def test_revocation_payload(self):
         obj = messages.Revocation(certificate=self.certr.body, reason=self.rsn)
@@ -776,8 +775,7 @@ def test_finalize_order_timeout(self):
     def test_revoke(self):
         self.client.revoke(messages_test.CERT, self.rsn)
         self.net.post.assert_called_once_with(
-            self.directory["revokeCert"], mock.ANY, content_type=None,
-            acme_version=2)
+            self.directory["revokeCert"], mock.ANY, acme_version=2)
 
 
 class MockJSONDeSerializable(jose.JSONDeSerializable):
Repository: certbot/certbot

Issue:
route53: Bring back parallel waiting for propagation
The route53 plugin used to be able to send several update requests, and wait on them all in parallel. It looks like we lost that ability in https://github.com/certbot/certbot/pull/4771, possibly due to a bad rebase. We should bring back that capability. Waiting for the server to declare that it's finished propagating is very slow, and so parallelizing that waiting speeds things up a *lot*.


Discussion:

Resolving patch:
diff --git a/certbot-dns-route53/certbot_dns_route53/dns_route53.py b/certbot-dns-route53/certbot_dns_route53/dns_route53.py
--- a/certbot-dns-route53/certbot_dns_route53/dns_route53.py
+++ b/certbot-dns-route53/certbot_dns_route53/dns_route53.py
@@ -42,14 +42,26 @@ def more_info(self):  # pylint: disable=missing-docstring,no-self-use
     def _setup_credentials(self):
         pass
 
-    def _perform(self, domain, validation_domain_name, validation):
-        try:
-            change_id = self._change_txt_record("UPSERT", validation_domain_name, validation)
+    def _perform(self, domain, validation_domain_name, validation): # pylint: disable=missing-docstring
+        pass
 
-            self._wait_for_change(change_id)
+    def perform(self, achalls):
+        self._attempt_cleanup = True
+
+        try:
+            change_ids = [
+                self._change_txt_record("UPSERT",
+                  achall.validation_domain_name(achall.domain),
+                  achall.validation(achall.account_key))
+                for achall in achalls
+            ]
+
+            for change_id in change_ids:
+                self._wait_for_change(change_id)
         except (NoCredentialsError, ClientError) as e:
             logger.debug('Encountered error during perform: %s', e, exc_info=True)
             raise errors.PluginError("\n".join([str(e), INSTRUCTIONS]))
+        return [achall.response(achall.account_key) for achall in achalls]
 
     def _cleanup(self, domain, validation_domain_name, validation):
         try:


Test patch:
Repository: certbot/certbot

Issue:
Change the default ACME server to the v2 endpoint
Step 4 of #5365 
- [ ] tools/deactivate.py
- [ ] acme/examples/example_client.py
The backend data structures are the same for the different endpoints, but we might want to either determine the client to use based on the server like we do in certbot, or at least use acmev2 styles.


Discussion:
We won't be doing this in our 0.22.0 release which will be coming out before the endpoint goes live, so I'm kicking this to 0.23.0.
@bmw It's live, but I can't figure out how to change the endpoint? 
```
Obtaining a new certificate
The currently selected ACME CA endpoint does not support issuing wildcard certificates.
```
Oh you need server flag  --preferred-challenges dns-01 --server https://acme-v02.api.letsencrypt.org/directory


Resolving patch:
diff --git a/certbot/constants.py b/certbot/constants.py
--- a/certbot/constants.py
+++ b/certbot/constants.py
@@ -84,7 +84,7 @@
     config_dir="/etc/letsencrypt",
     work_dir="/var/lib/letsencrypt",
     logs_dir="/var/log/letsencrypt",
-    server="https://acme-v01.api.letsencrypt.org/directory",
+    server="https://acme-v02.api.letsencrypt.org/directory",
 
     # Plugins parsers
     configurator=None,


Test patch:
Repository: certbot/certbot

Issue:
Unquote parameters in Nginx
We should support cases like this: https://community.letsencrypt.org/t/nginx-installer-misconfigurationerror-cannot-find-a-virtualhost-matching-domain/


Discussion:

Resolving patch:
diff --git a/certbot-nginx/certbot_nginx/parser.py b/certbot-nginx/certbot_nginx/parser.py
--- a/certbot-nginx/certbot_nginx/parser.py
+++ b/certbot-nginx/certbot_nginx/parser.py
@@ -743,7 +743,7 @@ def _parse_server_raw(server):
                 if addr.ssl:
                     parsed_server['ssl'] = True
         elif directive[0] == 'server_name':
-            parsed_server['names'].update(directive[1:])
+            parsed_server['names'].update(x.strip('"\'') for x in directive[1:])
         elif _is_ssl_on_directive(directive):
             parsed_server['ssl'] = True
             apply_ssl_to_all_addrs = True


Test patch:
diff --git a/certbot-nginx/certbot_nginx/tests/configurator_test.py b/certbot-nginx/certbot_nginx/tests/configurator_test.py
--- a/certbot-nginx/certbot_nginx/tests/configurator_test.py
+++ b/certbot-nginx/certbot_nginx/tests/configurator_test.py
@@ -639,7 +639,7 @@ def test_deploy_no_match_default_set(self):
         self.assertEqual([[['server'],
                            [['listen', 'myhost', 'default_server'],
                             ['listen', 'otherhost', 'default_server'],
-                            ['server_name', 'www.example.org'],
+                            ['server_name', '"www.example.org"'],
                             [['location', '/'],
                              [['root', 'html'],
                               ['index', 'index.html', 'index.htm']]]]],
diff --git a/certbot-nginx/certbot_nginx/tests/testdata/etc_nginx/sites-enabled/default b/certbot-nginx/certbot_nginx/tests/testdata/etc_nginx/sites-enabled/default
--- a/certbot-nginx/certbot_nginx/tests/testdata/etc_nginx/sites-enabled/default
+++ b/certbot-nginx/certbot_nginx/tests/testdata/etc_nginx/sites-enabled/default
@@ -1,7 +1,7 @@
 server {
     listen       myhost default_server;
     listen       otherhost default_server;
-    server_name www.example.org;
+    server_name "www.example.org";
 
     location / {
         root   html;
Repository: certbot/certbot

Issue:
Make Certbot depend on acme>=0.22.1 before switching to ACMEv2 as default
Without acme>=0.22.1, `certbot revoke` won't work with ACMEv2 so we should ensure that a new enough version of ACME is installed when using ACMEv2 by default.


Discussion:

Resolving patch:
diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -34,9 +34,7 @@ def read_file(filename, encoding='utf8'):
 # specified here to avoid masking the more specific request requirements in
 # acme. See https://github.com/pypa/pip/issues/988 for more info.
 install_requires = [
-    # Remember to update local-oldest-requirements.txt when changing the
-    # minimum acme version.
-    'acme>0.21.1',
+    'acme>=0.22.1',
     # We technically need ConfigArgParse 0.10.0 for Python 2.6 support, but
     # saying so here causes a runtime error against our temporary fork of 0.9.3
     # in which we added 2.6 support (see #2243), so we relax the requirement.


Test patch:
Repository: certbot/certbot

Issue:
[1] Standardize how you’ll run mypy
From http://blog.zulip.org/2016/10/13/static-types-in-python-oh-mypy/:

Write tooling to [install](https://github.com/zulip/zulip/blob/master/tools/install-mypy) and [run](https://github.com/zulip/zulip/blob/master/tools/run-mypy) `mypy` against your codebase, so that everyone using the project can run the type checker the same way. Two features are important in how you run mypy:

- Support for determining which files should be checked (a whitelist/exclude list is useful!).
- Specifying the correct flags for your project at this time. For a Python 2 project, I recommend starting with `mypy --py2 --silent-imports --fast-parser -i <paths>`. You should be able to do this using a [mypy.ini](http://mypy.readthedocs.io/en/latest/config_file.html) file.


Discussion:

Resolving patch:
diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -65,6 +65,10 @@ def read_file(filename, encoding='utf8'):
     'wheel',
 ]
 
+dev3_extras = [
+    'mypy',
+]
+
 docs_extras = [
     'repoze.sphinx.autointerface',
     # autodoc_member_order = 'bysource', autodoc_default_flags, and #4686
@@ -110,6 +114,7 @@ def read_file(filename, encoding='utf8'):
     install_requires=install_requires,
     extras_require={
         'dev': dev_extras,
+        'dev3': dev3_extras,
         'docs': docs_extras,
     },
 


Test patch: