internlm/SWE-Fixer-Train-110K huggingface dataset:
Repository: mlflow/mlflow

Issue:
Remove `# pylint: disable=unused-import` in `if TYPE_CHECKING:`
`# pylint: disable=unused-import` in `if TYPE_CHECKING` can be removed:

https://github.com/mlflow/mlflow/blob/63494ae9c191971c1aa5abe08359618e0b447871/mlflow/tracking/fluent.py#L64-L71

https://github.com/mlflow/mlflow/blob/63494ae9c191971c1aa5abe08359618e0b447871/mlflow/tracking/client.py#L50-L56


Discussion:
Test:

```
> git diff
diff --git a/mlflow/tracking/client.py b/mlflow/tracking/client.py
index fa77c32ca..801d8eb47 100644
--- a/mlflow/tracking/client.py
+++ b/mlflow/tracking/client.py
@@ -48,11 +48,11 @@ from mlflow.utils.mlflow_tags import (
 )
 
 if TYPE_CHECKING:
-    import pandas  # pylint: disable=unused-import
-    import matplotlib  # pylint: disable=unused-import
-    import plotly  # pylint: disable=unused-import
-    import numpy  # pylint: disable=unused-import
-    import PIL  # pylint: disable=unused-import
+    import pandas
+    import matplotlib
+    import plotly
+    import numpy
+    import PIL
 
 _logger = logging.getLogger(__name__)
 
> pylint mlflow/tracking/client.py

-------------------------------------------------------------------
Your code has been rated at 10.00/10 (previous run: 9.94/10, +0.06)
```

Resolving patch:
diff --git a/mlflow/tracking/client.py b/mlflow/tracking/client.py
--- a/mlflow/tracking/client.py
+++ b/mlflow/tracking/client.py
@@ -48,11 +48,11 @@
 )
 
 if TYPE_CHECKING:
-    import pandas  # pylint: disable=unused-import
-    import matplotlib  # pylint: disable=unused-import
-    import plotly  # pylint: disable=unused-import
-    import numpy  # pylint: disable=unused-import
-    import PIL  # pylint: disable=unused-import
+    import pandas
+    import matplotlib
+    import plotly
+    import numpy
+    import PIL
 
 _logger = logging.getLogger(__name__)
 
diff --git a/mlflow/tracking/fluent.py b/mlflow/tracking/fluent.py
--- a/mlflow/tracking/fluent.py
+++ b/mlflow/tracking/fluent.py
@@ -62,12 +62,12 @@
 )
 
 if TYPE_CHECKING:
-    import pandas  # pylint: disable=unused-import
-    import matplotlib  # pylint: disable=unused-import
+    import pandas
+    import matplotlib
     import matplotlib.figure
-    import plotly  # pylint: disable=unused-import
-    import numpy  # pylint: disable=unused-import
-    import PIL  # pylint: disable=unused-import
+    import plotly
+    import numpy
+    import PIL
 
 _active_run_stack = []
 _active_experiment_id = None


Test patch:
Repository: mlflow/mlflow

Issue:
Remove unused `loader_template` in `mlflow/pyfunc/__init__.py`
Remove unused `loader_template` in `mlflow/pyfunc/__init__.py`: 

https://github.com/mlflow/mlflow/blob/92adc7a1c8d25b13a1c147b9bafcca4d7209681d/mlflow/pyfunc/__init__.py#L1877-L1886


Discussion:
I can fix this issue assign it to me.

@AlimurtuzaCodes Thanks! Go ahead :)
@viktoriussuwandi Are you interested in working on this?

Resolving patch:
diff --git a/mlflow/pyfunc/__init__.py b/mlflow/pyfunc/__init__.py
--- a/mlflow/pyfunc/__init__.py
+++ b/mlflow/pyfunc/__init__.py
@@ -2085,15 +2085,3 @@ def _save_model_with_loader_module_and_data_path(
 
     _PythonEnv.current().to_yaml(os.path.join(path, _PYTHON_ENV_FILE_NAME))
     return mlflow_model
-
-
-loader_template = """
-
-import importlib
-import os
-import sys
-
-def load_pyfunc():
-    {update_path}return importlib.import_module('{main}')._load_pyfunc('{data_path}')
-
-"""


Test patch:
Repository: mlflow/mlflow

Issue:
Remove useless `format`
The following `format` calls are useless and should be rewritten as a string literal: 

https://github.com/mlflow/mlflow/blob/35453972f346bc46dbeadd9e82db586320f563ce/tests/sklearn/test_sklearn_autolog.py#L260-L262

https://github.com/mlflow/mlflow/blob/35453972f346bc46dbeadd9e82db586320f563ce/tests/sklearn/test_sklearn_autolog.py#L321
Remove unused `_user`
This variable is not used and can be removed:

https://github.com/mlflow/mlflow/blob/92b76a5330392008968dfbbf3f462bb7f9a83c81/mlflow/server/auth/__init__.py#L422


Discussion:

@harupy this whole should be removed ? I am a beginner so can u help me out ?
@Ankit8848 Yes, this line should be removed.
@harupy Thank you , I am going to work on it .

Resolving patch:
diff --git a/mlflow/server/auth/__init__.py b/mlflow/server/auth/__init__.py
--- a/mlflow/server/auth/__init__.py
+++ b/mlflow/server/auth/__init__.py
@@ -419,8 +419,6 @@ def _before_request():
     if is_unprotected_route(request.path):
         return
 
-    _user = request.authorization.username if request.authorization else None
-
     if request.authorization is None:
         return make_basic_auth_response()
 


Test patch:
Repository: mlflow/mlflow

Issue:
Typo fix
https://github.com/mlflow/mlflow/blob/9724c83bd8f0100c465e68e30651a9727de42ce0/dev/show_package_release_dates.py#L49

`package_legnth` -> `package_length`


Discussion:
Can you assign it to me?

@Kunj125 Assigned!

Resolving patch:
diff --git a/dev/show_package_release_dates.py b/dev/show_package_release_dates.py
--- a/dev/show_package_release_dates.py
+++ b/dev/show_package_release_dates.py
@@ -46,11 +46,11 @@ def main():
         release_dates = [safe_result(f) for f in futures]
 
     packages, versions = list(zip(*distributions))
-    package_legnth = get_longest_string_length(packages)
+    package_length = get_longest_string_length(packages)
     version_length = get_longest_string_length(versions)
     release_date_length = len("Release Date")
-    print("Package".ljust(package_legnth), "Version".ljust(version_length), "Release Date")
-    print("-" * (package_legnth + version_length + release_date_length + 2))
+    print("Package".ljust(package_length), "Version".ljust(version_length), "Release Date")
+    print("-" * (package_length + version_length + release_date_length + 2))
     for package, version, release_date in sorted(
         zip(packages, versions, release_dates),
         # Sort by release date in descending order
@@ -58,7 +58,7 @@ def main():
         reverse=True,
     ):
         print(
-            package.ljust(package_legnth),
+            package.ljust(package_length),
             version.ljust(version_length),
             release_date.ljust(release_date_length),
         )


Test patch:
Repository: mlflow/mlflow

Issue:
Remove python shebang
Remove:

https://github.com/mlflow/mlflow/blob/d898704ed4987c5113be0cda47c28054df18f4c4/docs/source/conf.py#L1

https://github.com/mlflow/mlflow/blob/d898704ed4987c5113be0cda47c28054df18f4c4/tests/utils/test_file_utils.py#L1


Discussion:

Resolving patch:
diff --git a/docs/source/conf.py b/docs/source/conf.py
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -1,4 +1,3 @@
-#!/usr/bin/env python3
 #
 # MLflow documentation build configuration file, created by
 # cookiecutter pipproject


Test patch:
diff --git a/tests/utils/test_file_utils.py b/tests/utils/test_file_utils.py
--- a/tests/utils/test_file_utils.py
+++ b/tests/utils/test_file_utils.py
@@ -1,4 +1,3 @@
-#!/usr/bin/env python
 import codecs
 import filecmp
 import hashlib
Repository: mlflow/mlflow

Issue:
[BUG] basic-auth init on remote database
### Describe the problem

Same issue #9399 happened when trying to initialize database which invokes this function [migrate_if_needed](https://github.com/mlflow/mlflow/blob/master/mlflow/server/auth/db/utils.py#L30)

Suggestion: Apply the same fix #9410 to force SqlAlchemy to render unobfuscated url

### Suggestion
```
alembic_cfg = _get_alembic_config(engine.url.render_as_string(hide_password=False))
```

### What component(s) does this bug affect?

- [ ] `area/artifacts`: Artifact stores and artifact logging
- [ ] `area/build`: Build and test infrastructure for MLflow
- [ ] `area/docs`: MLflow documentation pages
- [ ] `area/examples`: Example code
- [ ] `area/gateway`: AI Gateway service, Gateway client APIs, third-party Gateway integrations
- [ ] `area/model-registry`: Model Registry service, APIs, and the fluent client calls for Model Registry
- [ ] `area/models`: MLmodel format, model serialization/deserialization, flavors
- [ ] `area/recipes`: Recipes, Recipe APIs, Recipe configs, Recipe Templates
- [ ] `area/projects`: MLproject format, project running backends
- [ ] `area/scoring`: MLflow Model server, model deployment tools, Spark UDFs
- [X] `area/server-infra`: MLflow Tracking server backend
- [ ] `area/tracking`: Tracking Service, tracking client APIs, autologging

### What interface(s) does this bug affect?

- [ ] `area/uiux`: Front-end, user experience, plotting, JavaScript, JavaScript dev server
- [ ] `area/docker`: Docker use across MLflow's components, such as MLflow Projects and MLflow Models
- [X] `area/sqlalchemy`: Use of SQLAlchemy in the Tracking Service or Model Registry
- [ ] `area/windows`: Windows support

### What language(s) does this bug affect?

- [ ] `language/r`: R APIs and clients
- [ ] `language/java`: Java APIs and clients
- [ ] `language/new`: Proposals for new client languages

### What integration(s) does this bug affect?

- [ ] `integrations/azure`: Azure and Azure ML integrations
- [ ] `integrations/sagemaker`: SageMaker integrations
- [ ] `integrations/databricks`: Databricks integrations


Discussion:

Resolving patch:
diff --git a/mlflow/server/auth/db/utils.py b/mlflow/server/auth/db/utils.py
--- a/mlflow/server/auth/db/utils.py
+++ b/mlflow/server/auth/db/utils.py
@@ -28,7 +28,7 @@ def migrate(engine: Engine, revision: str) -> None:
 
 
 def migrate_if_needed(engine: Engine, revision: str) -> None:
-    alembic_cfg = _get_alembic_config(str(engine.url))
+    alembic_cfg = _get_alembic_config(engine.url.render_as_string(hide_password=False))
     script_dir = ScriptDirectory.from_config(alembic_cfg)
     with engine.begin() as conn:
         context = MigrationContext.configure(conn)


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/shap.py to mlflow/shap/__init__.py
Related to #9731 

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Please check #9692 for a similar PR.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/shap.py)

If you are using VScode, the file change should be automatically tracked. If the moving is not tracked correctly, you can use `git mv` to do the renaming.
Move mlflow/shap.py to mlflow/shap/__init__.py
Related to #9731 

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Please check #9692 for a similar PR.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/shap.py)

If you are using VScode, the file change should be automatically tracked. If the moving is not tracked correctly, you can use `git mv` to do the renaming.


Discussion:

Resolving patch:
diff --git a/mlflow/shap.py b/mlflow/shap/__init__.py
similarity index 100%
rename from mlflow/shap.py
rename to mlflow/shap/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/pmdarima.py to mlflow/pmdarima/__init__.py
Related to #9731 

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Please check #9692 for a similar PR.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/pmdarima.py)

If you are using VScode, the file change should be automatically tracked. If the moving is not tracked correctly, you can use `git mv` to do the renaming.


Discussion:

Resolving patch:
diff --git a/mlflow/pmdarima.py b/mlflow/pmdarima/__init__.py
similarity index 100%
rename from mlflow/pmdarima.py
rename to mlflow/pmdarima/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/johnshowlabs.py to mlflow/johnshowlabs/__init__.py
Related to #9731 

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Please check #9692 for a similar PR.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/johnsnowlabs.py)

If you are using VScode, the file change should be automatically tracked. If the moving is not tracked correctly, you can use `git mv` to do the renaming.


Discussion:

Resolving patch:
diff --git a/mlflow/johnsnowlabs.py b/mlflow/johnsnowlabs/__init__.py
similarity index 100%
rename from mlflow/johnsnowlabs.py
rename to mlflow/johnsnowlabs/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
Fix typo `Sublcass`
### Summary

Fix

https://github.com/mlflow/mlflow/blob/336ee351bfb444c912a3932c07a465b425f0a84f/mlflow/system_metrics/metrics/base_metrics_monitor.py#L16

and

https://github.com/mlflow/mlflow/blob/336ee351bfb444c912a3932c07a465b425f0a84f/mlflow/system_metrics/metrics/base_metrics_monitor.py#L24

### Notes

- Make sure to open a PR from a **non-master** branch.
- Sign off the commit using the `-s` flag when making a commit:

  ```sh
  git commit -s -m "..."
           # ^^ make sure to use this
  ```

- Include `#{issue_number}` (e.g. `#123`) in the PR description when opening a PR.



Discussion:

Resolving patch:
diff --git a/mlflow/system_metrics/metrics/base_metrics_monitor.py b/mlflow/system_metrics/metrics/base_metrics_monitor.py
--- a/mlflow/system_metrics/metrics/base_metrics_monitor.py
+++ b/mlflow/system_metrics/metrics/base_metrics_monitor.py
@@ -13,7 +13,7 @@ def __init__(self):
     def collect_metrics(self):
         """Method to collect metrics.
 
-        Sublcass should implement this method to collect metrics and store in `self._metrics`.
+        Subclass should implement this method to collect metrics and store in `self._metrics`.
         """
         pass
 
@@ -21,7 +21,7 @@ def collect_metrics(self):
     def aggregate_metrics(self):
         """Method to aggregate metrics.
 
-        Sublcass should implement this method to aggregate the metrics and return it in a dict.
+        Subclass should implement this method to aggregate the metrics and return it in a dict.
         """
         pass
 


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/sentence_transformers.py to mlflow/sentence_transformers/__init__.py
Related to #9731 

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Please check #9692 for a similar PR.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/sentence_transformers.py)

If you are using VScode, the file change should be automatically tracked. If the moving is not tracked correctly, you can use `git mv` to do the renaming.


Discussion:

Resolving patch:
diff --git a/mlflow/sentence_transformers.py b/mlflow/sentence_transformers/__init__.py
similarity index 100%
rename from mlflow/sentence_transformers.py
rename to mlflow/sentence_transformers/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/keras.py to mlflow/keras/__init__.py
Related to #9731 

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Please check #9692 for a similar PR.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/keras.py)

If you are using VScode, the file change should be automatically tracked. If the moving is not tracked correctly, you can use `git mv` to do the renaming.


Discussion:
I'd like to work on this issue, could anyone assign this ticket to me?
@TomeHirata thanks! assigned

Resolving patch:
diff --git a/mlflow/keras.py b/mlflow/keras/__init__.py
similarity index 100%
rename from mlflow/keras.py
rename to mlflow/keras/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
[DOC-FIX] Doc for Run.inputs erroneously refers to Run.data
### Willingness to contribute

No. I cannot contribute a documentation fix at this time.

### URL(s) with the issue

https://www.mlflow.org/docs/latest/python_api/mlflow.entities.html#mlflow.entities.Run

### Description of proposal (what needs changing)

In the Run doc page, the doc for Run.inputs refers to Run.data instead of Run.input.


property inputs
The run inputs, including dataset inputs

Return type
mlflow.entities.RunData




Discussion:
<!-- assign-maintainer -->
@mlflow/mlflow-team Please assign a maintainer and start triaging this issue.
I would like to contribute to this, as part of hacktoberfest 2023. But i don't fully understand the issue. When i click on the link icon on Run.inputs, it seems to link to the correct entry. What am i missing, can you please elaborate?
Hi @LostSputnik!
 In https://www.mlflow.org/docs/latest/python_api/mlflow.entities.html#mlflow.entities.Run you need to find these lines:
 ```
property inputs

    The run inputs, including dataset inputs

    Return type

        mlflow.entities.RunData
```
The line with the link [mlflow.entities.RunData](https://www.mlflow.org/docs/latest/python_api/mlflow.entities.html#mlflow.entities.Run) needs to be changed to [mlflow.entities.RunInputs](https://www.mlflow.org/docs/latest/python_api/mlflow.entities.html#mlflow.entities.RunInputs) link which is https://www.mlflow.org/docs/latest/python_api/mlflow.entities.html#mlflow.entities.RunInputs

So you need to change a file in mlflow/entities folder find link and change it. In [CONTRIBUTING](https://github.com/mlflow/mlflow/blob/master/CONTRIBUTING.md#writing-docs) you will find how your changes will be applied to html.

Resolving patch:
diff --git a/mlflow/entities/run.py b/mlflow/entities/run.py
--- a/mlflow/entities/run.py
+++ b/mlflow/entities/run.py
@@ -45,7 +45,7 @@ def inputs(self) -> RunInputs:
         """
         The run inputs, including dataset inputs
 
-        :rtype: :py:class:`mlflow.entities.RunData`
+        :rtype: :py:class:`mlflow.entities.RunInputs`
         """
         return self._inputs
 


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/prophet.py to mlflow/prophet/__init__.py
### Summary

Related to #9731.

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py `for simplicity, but in the future we will think about a better refactoring.

Similiar PR can be found in #9692.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/llm.py)




Discussion:
@montanarograziano Thanks! Assigned :)

Resolving patch:
diff --git a/mlflow/prophet.py b/mlflow/prophet/__init__.py
similarity index 100%
rename from mlflow/prophet.py
rename to mlflow/prophet/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/lightgbm.py to mlflow/lightgbm/__init__.py
Related to #9731 

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Please check #9692 for a similar PR.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/lightgbm.py)

If you are using VScode, the file change should be automatically tracked. If the moving is not tracked correctly, you can use `git mv` to do the renaming.


Discussion:
Hello, I would like to work on this issue. Could you please assign it to me? 

<!-- assign-maintainer -->
@mlflow/mlflow-team Please assign a maintainer and start triaging this issue.
@timsinashok Thanks!

Resolving patch:
diff --git a/mlflow/lightgbm.py b/mlflow/lightgbm/__init__.py
similarity index 100%
rename from mlflow/lightgbm.py
rename to mlflow/lightgbm/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/onnx.py to mlflow/onnx/__init__.py
### Summary

Related to #9731.

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Similiar PR can be found in #9692.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/lightgbm.py)


Discussion:

Resolving patch:
diff --git a/mlflow/onnx.py b/mlflow/onnx/__init__.py
similarity index 100%
rename from mlflow/onnx.py
rename to mlflow/onnx/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/spacy.py to mlflow/spacy/__init__.py
### Summary

### Summary

Related to #9731.

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Similiar PR can be found in #9692.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/lightgbm.py)


Discussion:

Resolving patch:
diff --git a/mlflow/spacy.py b/mlflow/spacy/__init__.py
similarity index 100%
rename from mlflow/spacy.py
rename to mlflow/spacy/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/statsmodel.py to mlflow/statsmodel/__init__.py
### Summary

### Summary

Related to #9731.

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Similiar PR can be found in #9692.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/lightgbm.py)

### Notes

_No response_


Discussion:
Hi @montanarograziano 
If you don't mind, can I work on it?
No problem for me :) as long as @harupy is ok.

@Gekko0114 thanks, go ahead!

Resolving patch:
diff --git a/mlflow/statsmodels.py b/mlflow/statsmodels/__init__.py
similarity index 100%
rename from mlflow/statsmodels.py
rename to mlflow/statsmodels/__init__.py


Test patch:
Repository: mlflow/mlflow

Issue:
Move mlflow/llm.py to mlflow/llm/__init__.py 
Related to #9731 

The motivation is to keep each flavor module in its own directory for consistency. For now we just move it to `__init__.py` for simplicity, but in the future we will think about a better refactoring.

Please check #9692 for a similar PR.

Code pointer: [link](https://github.com/mlflow/mlflow/blob/master/mlflow/llm.py)

If you are using VScode, the file change should be automatically tracked. If the moving is not tracked correctly, you can use `git mv` to do the renaming.


Discussion:
Hi,
I would like to be a volunteer to work on this issue.
@lukasz-gawron Thanks!
@lukasz-gawron any updates on this?

Resolving patch:
diff --git a/mlflow/llm.py b/mlflow/llm/__init__.py
similarity index 100%
rename from mlflow/llm.py
rename to mlflow/llm/__init__.py


Test patch: