internlm/SWE-Fixer-Train-110K huggingface dataset:
Repository: OpenMined/PySyft

Issue:
Create python + html output version of hagrid check
Allow hagrid check to be runnable via python rather than CLI and make the output nice and formatted with HTML the way quickstart / install wizard works.

Once this works remove the `!hagrid check` terminal command from the install wizard.


Discussion:

Resolving patch:
diff --git a/packages/hagrid/hagrid/__init__.py b/packages/hagrid/hagrid/__init__.py
--- a/packages/hagrid/hagrid/__init__.py
+++ b/packages/hagrid/hagrid/__init__.py
@@ -5,6 +5,7 @@
 from typing import Any
 
 # relative
+from .cli import check_status as check  # noqa: F401
 from .quickstart_ui import QuickstartUI
 from .wizard_ui import WizardUI
 
diff --git a/packages/hagrid/hagrid/cli.py b/packages/hagrid/hagrid/cli.py
--- a/packages/hagrid/hagrid/cli.py
+++ b/packages/hagrid/hagrid/cli.py
@@ -2499,6 +2499,12 @@ def create_check_table(
 )
 def check(
     ip_addresses: TypeList[str], wait: bool = False, silent: bool = False
+) -> None:
+    check_status(ip_addresses=ip_addresses, wait=wait, silent=silent)
+
+
+def check_status(
+    ip_addresses: TypeList[str], wait: bool = False, silent: bool = False
 ) -> None:
     console = rich.get_console()
     if len(ip_addresses) == 0:


Test patch:
Repository: OpenMined/PySyft

Issue:
Add instructions to use GitPod as an alternative when docker memory requirements fail
## Description
Add instructions to use GitPod as an alternative in the Exception message when the check for `docker_desktop_memory` fails.


Discussion:

Resolving patch:
diff --git a/packages/hagrid/hagrid/cli.py b/packages/hagrid/hagrid/cli.py
--- a/packages/hagrid/hagrid/cli.py
+++ b/packages/hagrid/hagrid/cli.py
@@ -932,7 +932,10 @@ def create_launch_cmd(
                     f"\tWindows Help: https://docs.docker.com/desktop/windows/\n\n"
                     f"Then re-run your hagrid command.\n\n"
                     f"If you see this warning on Linux then something isn't right. "
-                    f"Please file a Github Issue on PySyft's Github"
+                    f"Please file a Github Issue on PySyft's Github.\n\n"
+                    f"Alternatively in case no more memory could be allocated, "
+                    f"you can run hagrid on the cloud with GitPod by visiting "
+                    f"https://gitpod.io/#https://github.com/OpenMined/PySyft."
                 )
 
             if is_windows() and not DEPENDENCIES["wsl"]:


Test patch:
Repository: OpenMined/PySyft

Issue:
Incorrect Jax Prompt  in Windows.
## Description
In the Install Wizard, during 

`wizard.check_syft`even if jax was installed on windows, the prompt is displayed to install jax again.

The incorrect prompt should be rectified.


Discussion:

Resolving patch:
diff --git a/packages/hagrid/hagrid/deps.py b/packages/hagrid/hagrid/deps.py
--- a/packages/hagrid/hagrid/deps.py
+++ b/packages/hagrid/hagrid/deps.py
@@ -103,7 +103,8 @@ class DependencySyftOS(Dependency):
     def check(self) -> None:
         self.display = "✅ " + ENVIRONMENT["os"]
         if is_windows():
-            self.issues.append(windows_jaxlib())
+            if not get_pip_package("jaxlib"):
+                self.issues.append(windows_jaxlib())
         elif is_apple_silicon():
             pass
 


Test patch:
Repository: OpenMined/PySyft

Issue:
I can't click "How to use Ctop" on OSX


![Image](https://user-images.githubusercontent.com/4328594/200077151-078762cd-2a84-48d0-9b90-c53226192d43.png)




Discussion:
Interestingly this works for me, but I do have to press and hold `command` button first which is normal for highlighting links in my terminal. It might be a good idea to just output the raw link though for maximum compatibility.
<img width="391" alt="Screen Shot 2022-11-07 at 3 50 35 pm" src="https://user-images.githubusercontent.com/2882739/200235594-c5842073-6141-4f13-9041-5a2b788324c3.png">

@madhavajay  I would like to work on this issue if no one else has already started. 

Replacing [this](https://github.com/OpenMined/PySyft/blob/d2bc2290b545c37bb0b6f0a0ad888530ae284405/packages/hagrid/hagrid/cli.py#L2981) print statement with the below one should solve the issue, right?
```python3
print("Video Explanation: https://youtu.be/BJhlCxerQP4\n")
```
@bipinKrishnan Thanks. I have assigned you, let me know if you have any questions. 🙂
Cool! I will start my work on this :rocket: 

Resolving patch:
diff --git a/packages/hagrid/hagrid/cli.py b/packages/hagrid/hagrid/cli.py
--- a/packages/hagrid/hagrid/cli.py
+++ b/packages/hagrid/hagrid/cli.py
@@ -3006,9 +3006,7 @@ def check_status(
         )
         print("You can view your container logs using the following tool:")
         print("Tool: [link=https://ctop.sh]Ctop[/link]")
-        print(
-            "Video Explanation: [link=https://youtu.be/BJhlCxerQP4]How to use Ctop[/link]\n"
-        )
+        print("Video Explanation: https://youtu.be/BJhlCxerQP4 \n")
 
 
 cli.add_command(check)


Test patch:
Repository: OpenMined/PySyft

Issue:
Redundant white spaces in message on tensor creation
## Description

<img width="1018" alt="Screenshot 2022-11-24 at 3 46 54 PM" src="https://user-images.githubusercontent.com/6521018/203723732-ecae0e8c-d724-4860-ad71-6d1d8a6e2caf.png">

## How to Reproduce
Create any `sy.Tensor`

## Expected Behavior
A clear and concise description of what you expected to happen.

## Screenshots
If applicable, add screenshots to help explain your problem.

## System Information
 - OS: [e.g. iOS]
 - OS Version: [e.g. 22]
 - Language Version: [e.g. Python 3.7, Node 10.18.1]
 - Package Manager Version: [e.g. Conda 4.6.1, NPM 6.14.1]
 - Browser (if applicable): [e.g. Google Chrome]
 - Browser Version (if applicable): [e.g. 81.0.4044.138]

## Additional Context
Add any other context about the problem here.



Discussion:

Resolving patch:
diff --git a/packages/syft/src/syft/core/tensor/tensor.py b/packages/syft/src/syft/core/tensor/tensor.py
--- a/packages/syft/src/syft/core/tensor/tensor.py
+++ b/packages/syft/src/syft/core/tensor/tensor.py
@@ -517,8 +517,8 @@ def __init__(
         self.public_dtype = public_dtype
 
         print(
-            "Tensor created! You can activate Differential Privacy protection by calling .private() or \
-            .annotate_with_dp_metadata()."
+            "Tensor created! You can activate Differential Privacy protection by calling .private() or "
+            ".annotate_with_dp_metadata()."
         )
 
     def tag(self, name: str) -> Tensor:


Test patch:
Repository: OpenMined/PySyft

Issue:
Implementation of `__array_ufunc__` for `DataSubjectArray` only supports `__call__`
According to https://numpy.org/doc/stable/reference/arrays.classes.html#numpy.class.__array_ufunc__, implementation of `__array_ufunc__` should support different call `method`s: `__call__`, `reduce`, `reduceat`, `accumulate`, `outer`, `inner`. In our current implementation for `DataSubjectArray` we only support `__call__`. In other words, if users call `np.multiply.reduce` on `DataSubjectArray(["bob", "alice"])` it would be the same as calling `np.multiply`.

https://github.com/OpenMined/PySyft/blob/291e506bec5de63e8fd96153efca9f1e31cc0e50/packages/syft/src/syft/core/adp/data_subject_list.py#L633-L641

See how we don't use the `method` argument passed to `__array_ufunc__` here?

Even though I suspect supporting `reduce`, `reduceat`, `accumulate`, `outer`, `inner` doesn't make sense for `DataSubjectArray`, we should at least throw an error when users try to do that.

This happens with our implementation of `__array_ufunc__` for `PassthroughTensor` too. In `PassthroughTensor`, supporting the other `method`s does make sense. That's why in #7111 I opted to just disable `__array_ufunc__` entirely for now.

@rasswanth-s


Discussion:

Resolving patch:
diff --git a/packages/syft/src/syft/core/adp/data_subject_list.py b/packages/syft/src/syft/core/adp/data_subject_list.py
--- a/packages/syft/src/syft/core/adp/data_subject_list.py
+++ b/packages/syft/src/syft/core/adp/data_subject_list.py
@@ -630,16 +630,6 @@ def sqrt(self, *args: Any, **kwargs: Any) -> DataSubjectArray:
     def rint(self, *args: Any, **kwargs: Any) -> DataSubjectArray:
         return DataSubjectArray(self.data_subjects)
 
-    def __array_ufunc__(self, ufunc, method, *inputs, **kwargs) -> ArrayLike:  # type: ignore
-        method_name = ufunc.__name__
-        method = getattr(self, method_name, None)
-        if method is not None:
-            return method(*inputs, **kwargs)
-        else:
-            raise NotImplementedError(
-                f"Method: {method_name} not implemented in DataSubjectArray"
-            )
-
     @staticmethod
     def from_objs(input_subjects: Union[np.ndarray, list]) -> ArrayLike:
         # TODO: When the user passes the data subjects they might pass it as list


Test patch:
Repository: OpenMined/PySyft

Issue:
Budget update throwing 500 on UI
## Description
Not able to update the privacy budget of a user from the UI.
This was working in the previous beta versions.

## How to Reproduce
1. Log into the UI with admin credentials
2. Select a user
3. Click on adjust budget
4. update the budget value and click save

## Expected Behavior
User budget is updated successfully.

## Screenshots
![Screenshot from 2022-11-25 16-41-03](https://user-images.githubusercontent.com/11032835/203979609-a59eabd4-e58c-49a1-9843-23170c7874e2.png)

## System Information
 - OS: [e.g. iOS]
 - OS Version: [e.g. 22]
 - Language Version: [e.g. Python 3.7, Node 10.18.1]
 - Package Manager Version: [e.g. Conda 4.6.1, NPM 6.14.1]
 - Browser (if applicable): [e.g. Google Chrome]
 - Browser Version (if applicable): [e.g. 81.0.4044.138]

## Additional Context
Add any other context about the problem here.



Discussion:
@tcp do you know if this will be difficult or is it related to a common problem with PyGrid UI in 0.7?
@madhavajay hopefully with https://github.com/OpenMined/PySyft/pull/7112 we'll get it over the hump

Resolving patch:
diff --git a/packages/syft/src/syft/core/node/common/node_service/user_manager/new_user_messages.py b/packages/syft/src/syft/core/node/common/node_service/user_manager/new_user_messages.py
--- a/packages/syft/src/syft/core/node/common/node_service/user_manager/new_user_messages.py
+++ b/packages/syft/src/syft/core/node/common/node_service/user_manager/new_user_messages.py
@@ -304,6 +304,7 @@ def run(  # type: ignore
             or self.payload.name
             or self.payload.institution
             or self.payload.website
+            or self.payload.budget
         )
 
         # Change own information
@@ -311,7 +312,7 @@ def run(  # type: ignore
 
         if not _valid_parameters:
             raise MissingRequestKeyError(
-                "Missing json fields ( email,password,role,groups, name )"
+                "Missing json fields (email, password, role, groups, name or budget)"
             )
 
         if not _valid_user:


Test patch:
Repository: OpenMined/PySyft

Issue:
hagrid launch shows hagrid logs None if a node name is not given
## Description
If a node name is not specified in `hagrid launch`, i.e. `hagrid launch domain to docker:8081`, the message will read `To view container logs run hagrid logs None`.

<img width="403" alt="Screenshot 2022-12-07 at 12 11 29 AM" src="https://user-images.githubusercontent.com/6521018/205967978-e68e44fe-7fa9-4306-9137-42c9ac08a025.png">

## How to Reproduce
1. Go to '...'
2. Click on '...'
3. Scroll down to '...'
4. See error

## Expected Behavior
A clear and concise description of what you expected to happen.

## Screenshots
If applicable, add screenshots to help explain your problem.

## System Information
 - OS: [e.g. iOS]
 - OS Version: [e.g. 22]
 - Language Version: [e.g. Python 3.7, Node 10.18.1]
 - Package Manager Version: [e.g. Conda 4.6.1, NPM 6.14.1]
 - Browser (if applicable): [e.g. Google Chrome]
 - Browser Version (if applicable): [e.g. 81.0.4044.138]

## Additional Context
Add any other context about the problem here.



Discussion:

Resolving patch:
diff --git a/packages/hagrid/hagrid/cli.py b/packages/hagrid/hagrid/cli.py
--- a/packages/hagrid/hagrid/cli.py
+++ b/packages/hagrid/hagrid/cli.py
@@ -389,10 +389,10 @@ def launch(args: TypeTuple[str], **kwargs: Any) -> None:
                 port = match_port.group().replace("HTTP_PORT=", "")
                 check_status("localhost" + ":" + port)
 
-            node_name = verb.get_named_term_type(name="node_name").raw_input
+            node_name = verb.get_named_term_type(name="node_name").snake_input
             rich.get_console().print(
                 rich.panel.Panel.fit(
-                    f"🚨🚨🚨 To view container logs run [bold red] hagrid logs {node_name} [/bold red]\t"
+                    f"✨ To view container logs run [bold green]hagrid logs {node_name}[/bold green]\t"
                 )
             )
 
diff --git a/packages/hagrid/hagrid/deps.py b/packages/hagrid/hagrid/deps.py
--- a/packages/hagrid/hagrid/deps.py
+++ b/packages/hagrid/hagrid/deps.py
@@ -36,6 +36,7 @@
 
 # relative
 from .exceptions import MissingDependency
+from .lib import is_gitpod
 from .mode import EDITABLE_MODE
 from .nb_output import NBOutput
 from .version import __version__
@@ -546,7 +547,7 @@ def allowed_to_run_docker() -> Tuple[bool, str]:
             bool_result = True
 
         # Check if current user is member of docker group.
-        elif user not in "".join(line):
+        elif not is_gitpod() and user not in "".join(line):
             msg = f"""⚠️  User is not a member of docker group.
 {WHITE}You're currently not allowed to run docker, perform the following steps:\n
     1 - Run \'{GREEN}sudo usermod -a -G docker $USER\'{WHITE} to add docker permissions.


Test patch:
Repository: OpenMined/PySyft

Issue:
Fix ledger test brent method
## Description
FAILED tests/syft/core/adp/data_subject_ledger_test.py::test_cache_indexing_correctness - ValueError: Use of `bounds` is incompatible with 'method=Brent'.
FAILED tests/syft/core/adp/data_subject_ledger_test.py::test_cache_bypass - ValueError: Use of `bounds` is incompatible with 'method=Brent'.

## How to Reproduce
See CI:
https://github.com/OpenMined/PySyft/actions/runs/3842992045/jobs/6544847611
`pytest -s -m 'fast or slow' --cov syft --cov-fail-under 65 -n auto --durations=50`



Discussion:

Resolving patch:
diff --git a/packages/syft/src/syft/core/adp/data_subject_ledger.py b/packages/syft/src/syft/core/adp/data_subject_ledger.py
--- a/packages/syft/src/syft/core/adp/data_subject_ledger.py
+++ b/packages/syft/src/syft/core/adp/data_subject_ledger.py
@@ -335,7 +335,7 @@ def _get_optimal_alpha_for_constant(
         f = self._get_fake_rdp_func(constant=constant)
         f2 = self._get_alpha_search_function(rdp_compose_func=f)
         results = minimize_scalar(
-            f2, method="Brent", bracket=(1, 2), bounds=[1, np.inf]
+            f2, method="Brent", bracket=(1, 2)#, bounds=[1, np.inf]
         )
 
         return results.x, results.fun


Test patch:
Repository: MTES-MCT/aides-territoires

Issue:
Mauvais article et mauvaise casse pour message d'erreur sur adresse mail
Sur la page `/comptes/connexion/`, on voit : 

```
Saisissez un Adresse e-mail…
```

Alors que l'on devrait avoir : 

```
Saisissez une adresse e-mail…
```

![image](https://user-images.githubusercontent.com/6030745/90972240-a399de00-e517-11ea-89e7-85a6d0445ee2.png)

La base du message d'erreur vient des [fichiers de traduction de Django](https://github.com/django/django/blob/6376278a904e2f8b34893a7166508dfd205fdceb/django/contrib/auth/locale/fr/LC_MESSAGES/django.po) : 

```py
msgid ""
"Please enter a correct %(username)s and password. Note that both fields may "
"be case-sensitive."
msgstr ""
"Saisissez un %(username)s et un mot de passe valides. Remarquez que chacun "
"de ces champs est sensible à la casse (différenciation des majuscules/"
"minuscules)."
```

Et à la place du placeholder `%(username)s`, on a `Adresse e-mail` dans ce projet.

Dans le fichier de traduction (`django.po`) du projet actuel, on voit : 

```py
msgid "Email address"
msgstr "Adresse e-mail"
```


Discussion:
Je propose de simplement surcharger la traduction du framework par le texte exact dont nous avons besoin : 

```
msgid ""
"Please enter a correct %(username)s and password. Note that both fields may "
"be case-sensitive."
msgstr ""
"Saisissez une adresse e-mail et un mot de passe valides. Remarquez que chacun "
"de ces champs est sensible à la casse (différenciation des majuscules/"
"minuscules)."
```

Voici ce que j'obtiens dans mon environnement local : 

![image](https://user-images.githubusercontent.com/6030745/90973103-22464980-e51f-11ea-9eb1-8702f94d1202.png)


Resolving patch:
diff --git a/src/accounts/forms.py b/src/accounts/forms.py
--- a/src/accounts/forms.py
+++ b/src/accounts/forms.py
@@ -39,6 +39,13 @@ def clean_email(self):
 
 
 class LoginForm(AuthenticationForm):
+    error_messages = {
+        'invalid_login': _(
+            'Please enter a correct email address and password.'
+        ),
+        'inactive': _('This account is inactive.'),
+    }
+
     username = forms.EmailField(
         label=_('Your email address'),
         required=True)


Test patch:
Repository: apple/coremltools

Issue:
Error reading protobuf spec. validator error: The .mlmodel supplied is of version 3, intended for a newer version of Xcode. This version of Xcode supports model version 2 or earlier.
Ported from https://github.com/apple/turicreate/issues/701

On Linux, loading a spec into an `MLModel` with any specification version works, because it doesn't attempt to validate/compile the model, since it assumes Core ML doesn't exist on the system anyway.

On latest macOS with latest Xcode, loading a spec into an `MLModel` with any supported specification version works, because model validation/compilation succeeds.

However, loading a spec into an `MLModel` with specification version 3 on macOS 10.13 with Xcode 9.4 fails with the error:

```
Error reading protobuf spec. validator error: The .mlmodel supplied is of version 3, intended for a newer version of Xcode. This version of Xcode supports model version 2 or earlier.
```

Expected:

This should work on older macOS/Xcode the same way it works on Linux, perhaps with a runtime warning that predict won't be available.

Actual:

Since this throws a Python exception, it interrupts execution of the caller and in the case of Turi Create, results in an unusable exported model/spec.


Discussion:

Resolving patch:
diff --git a/coremltools/models/model.py b/coremltools/models/model.py
--- a/coremltools/models/model.py
+++ b/coremltools/models/model.py
@@ -76,8 +76,14 @@ def _get_proxy_from_spec(filename):
         if _has_custom_layer(spec):
             # custom layers can't be supported directly by compiling and loading the model here
             return None
-
-        return _MLModelProxy(filename)
+        try:
+            return _MLModelProxy(filename)
+        except RuntimeError as e:
+            warnings.warn(
+                "You will not be able to run predict() on this Core ML model." +
+                "Underlying exception message was: " + str(e), 
+                RuntimeWarning)
+            return None
     else:
         return None
 


Test patch:
diff --git a/coremltools/test/test_model.py b/coremltools/test/test_model.py
--- a/coremltools/test/test_model.py
+++ b/coremltools/test/test_model.py
@@ -134,5 +134,16 @@ def test_future_version(self):
             model.predict(1)
         self.spec.specificationVersion = 1
 
-
-
+    @unittest.skipIf(macos_version() >= (10, 13), 'Only supported on macOS 10.13-')
+    def test_MLModel_warning(self):
+        self.spec.specificationVersion = 3
+        import warnings
+        with warnings.catch_warnings(record=True) as w:
+            # Cause all warnings to always be triggered.
+            warnings.simplefilter("always")
+            model = MLModel(self.spec)
+            assert len(w) == 1
+            assert issubclass(w[-1].category, RuntimeWarning)
+            assert "not able to run predict()" in str(w[-1].message)
+        self.spec.specificationVersion = 1
+        model = MLModel(self.spec)
Repository: apple/coremltools

Issue:
Why is six pinned to 1.10.0?
Is there any reason for [six to be pinned to version 1.10.0](https://github.com/apple/coremltools/blob/master/setup.py#L44). This gives transitive dependency issues sometimes.

/cc @mats-claassen


Discussion:
coremltools 0.8 has requirement six==1.10.0, but you'll have six 1.11.0 which is incompatible.


Resolving patch:
diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -42,7 +42,7 @@
     install_requires=[
         'numpy >= 1.10.0',
         'protobuf >= 3.1.0',
-        'six==1.10.0'
+        'six>=1.10.0'
     ],
     entry_points = {
         'console_scripts': ['coremlconverter = coremltools:_main']


Test patch:
Repository: apple/coremltools

Issue:
Custom Title in Spec Visualization
## 🌱 Describe your Feature Request
I'm a big fan of the spec visualization built into coremltools (i.e. calling `my_mlmodel.visualize_spec()`). Using this feature has saved me so much time. However when examining multiple specs in different web browser tabs, things can get confusing.

The title is **always**: `CoreML Graph Visualization`. This is the title of the tab/webpage, as well as the title displayed in the body, at the top of, the webpage. If you're looking at more than one spec, it's easy to get confused about which one is which.

I think it would be great if `visualize_spec` took an optional parameter called `title`. The default value for this value could be `"CoreML Graph Visualization"`.



Discussion:

Resolving patch:
diff --git a/coremltools/models/model.py b/coremltools/models/model.py
--- a/coremltools/models/model.py
+++ b/coremltools/models/model.py
@@ -353,7 +353,7 @@ def predict(self, data, useCPUOnly=False, **kwargs):
             else:
                 raise Exception('Unable to load CoreML.framework. Cannot make predictions.')
 
-    def visualize_spec(self, port=None, input_shape_dict=None):
+    def visualize_spec(self, port=None, input_shape_dict=None, title='CoreML Graph Visualization'):
         """
         Visualize the model.
 
@@ -367,6 +367,9 @@ def visualize_spec(self, port=None, input_shape_dict=None):
             are 1 i.e. (1, 1, C, H, W). If either is not 1, then provide
             full input shape
 
+        title: str
+            Title for the visualized model
+
         Returns
         -------
 
@@ -479,6 +482,10 @@ def visualize_spec(self, port=None, input_shape_dict=None):
         web_dir = _os.path.join(_os.path.dirname(coremltools.__file__),
                                 'graph_visualization')
         with open('{}/model.json'.format(web_dir), 'w') as file:
-            _json.dump(cy_data, file)
+            model_data = {
+                'title': title,
+                'cy_data': cy_data,
+            }
+            _json.dump(model_data, file)
 
         _start_server(port, web_dir)


Test patch: