internlm/SWE-Fixer-Train-110K huggingface dataset:
Repository: TheAlgorithms/Python

Issue:
Global variable should not using in class method
### Repository commit

9caf4784aada17dc75348f77cc8c356df503c0f3

### Python version (python --version)

python3.11

### Dependencies version (pip freeze)

#nop 

### Expected behavior

Hi, guys. I come across one global variable that used in class method. I think using instance attribute would be better !
```python
    def show_data(self):
        show_list = []
        for i in range(1, N + 1):  ==> should using self.N instead of N !
            show_list += [self.query(i, i)]
        print(show_list)
```
[source](https://github.com/TheAlgorithms/Python/blob/master/data_structures/binary_tree/segment_tree.py#L101)



### Actual behavior

```python
    def show_data(self):
        show_list = []
        for i in range(1, self.N + 1):  
            show_list += [self.query(i, i)]
        print(show_list)
```


Discussion:

Resolving patch:
diff --git a/data_structures/binary_tree/segment_tree.py b/data_structures/binary_tree/segment_tree.py
--- a/data_structures/binary_tree/segment_tree.py
+++ b/data_structures/binary_tree/segment_tree.py
@@ -98,7 +98,7 @@ def query_recursive(self, idx, l, r, a, b):  # noqa: E741
 
     def show_data(self):
         show_list = []
-        for i in range(1, N + 1):
+        for i in range(1, self.N + 1):
             show_list += [self.query(i, i)]
         print(show_list)
 


Test patch:
Repository: pycontribs/jira

Issue:
Add ability to specify the timeSpentSeconds instead of timeSpent when creating a worklog
Right now, when a worklog entry is created, you need to pass the time as a string (2d 3h 5m), but the JIRA API supports receiving a timeSpentSeconds value, which is easier to generate from an application if you're doing math to calculate the timeSpent



Discussion:

Resolving patch:
diff --git a/jira/client.py b/jira/client.py
--- a/jira/client.py
+++ b/jira/client.py
@@ -910,7 +910,7 @@ def worklog(self, issue, id):
         return self._find_for_resource(Worklog, (issue, id))
 
     @translate_resource_args
-    def add_worklog(self, issue, timeSpent=None, adjustEstimate=None,
+    def add_worklog(self, issue, timeSpent=None, timeSpentSeconds=None, adjustEstimate=None,
                     newEstimate=None, reduceBy=None, comment=None, started=None, user=None):
         """
         Add a new worklog entry on an issue and return a Resource for it.
@@ -935,6 +935,8 @@ def add_worklog(self, issue, timeSpent=None, adjustEstimate=None,
         data = {}
         if timeSpent is not None:
             data['timeSpent'] = timeSpent
+        if timeSpentSeconds is not None:
+            data['timeSpentSeconds'] = timeSpentSeconds
         if comment is not None:
             data['comment'] = comment
         elif user:


Test patch:
Repository: pycontribs/jira

Issue:
JIRAError does not correctly display full error information
There seems to be a bug in `JIRAError.__str__`

```
    if self.response and hasattr(self.response, 'text'):
        t += "\n\tresponse text = " % self.response.headers
```

https://github.com/pycontribs/jira/blob/master/jira/utils.py#L161
1. This checks for the `text` attribute but then uses the `headers` attribute (cut-and-paste error from the lines above?)
2. The response object is "Truthy" based upon the HTTP response, so in the case of a HTTP error it is actually "False" so the conditional check fails.
3. Which is just as well, because once you fix this you'll see that the format string is invalid and causes an exception because it is missing a %s at the end

:-)

I'll submit a pull request to fix this up shortly.



Discussion:
Citation from PEP-8, just to ram the point home:

> beware of writing `if x` when you really mean `if x is not None` -- e.g. when testing whether a variable or argument that defaults to None was set to some other value. The other value might have a type (such as a container) that could be false in a boolean context!

https://www.python.org/dev/peps/pep-0008/


Resolving patch:
diff --git a/jira/utils.py b/jira/utils.py
--- a/jira/utils.py
+++ b/jira/utils.py
@@ -148,17 +148,17 @@ def __str__(self):
         if self.url:
             t += "\n\turl: %s" % self.url
 
-        if self.request and hasattr(self.request, 'headers'):
-            t += "\n\trequest headers = " % self.request.headers
+        if self.request is not None and hasattr(self.request, 'headers'):
+            t += "\n\trequest headers = %s" % self.request.headers
 
-        if self.request and hasattr(self.request, 'text'):
-            t += "\n\trequest text = " % self.request.text
+        if self.request is not None and hasattr(self.request, 'text'):
+            t += "\n\trequest text = %s" % self.request.text
 
-        if self.response and hasattr(self.response, 'headers'):
-            t += "\n\tresponse headers = " % self.response.headers
+        if self.response is not None and hasattr(self.response, 'headers'):
+            t += "\n\tresponse headers = %s" % self.response.headers
 
-        if self.response and hasattr(self.response, 'text'):
-            t += "\n\tresponse text = " % self.response.headers
+        if self.response is not None and hasattr(self.response, 'text'):
+            t += "\n\tresponse text = %s" % self.response.text
 
         t += '\n'
         return t


Test patch:
Repository: pycontribs/jira

Issue:
jiraclient is broken for non-oauth logins by commit 292597c
See https://github.com/pycontribs/jira/commit/292597c573e976c7da42ce570a81086fae301166#diff-30139c45274d7869e2ee349578b0e30cR247



Discussion:

Resolving patch:
diff --git a/jira/jirashell.py b/jira/jirashell.py
--- a/jira/jirashell.py
+++ b/jira/jirashell.py
@@ -244,6 +244,8 @@ def main():
     if oauth['oauth_dance']:
         oauth = oauth_dance(
             options['server'], oauth['consumer_key'], oauth['key_cert'], oauth['print_tokens'], options['verify'])
+    else:
+        oauth = None
 
     jira = JIRA(options=options, basic_auth=basic_auth, oauth=oauth)
 


Test patch:
Repository: pycontribs/jira

Issue:
Exception AttributeError: "'NoneType' object has no attribute 'version_info'"
I'm getting this error from this particular line:  https://github.com/pycontribs/jira/blob/develop/jira/client.py#L333. It seems `sys` module is `None` in this context.

Python 2.7.10 (OSX 10.10.5)
Jira:
- 1.0.6.dev20160420173258 (from pip show jira)
- '1.0.6' from `jira.__version__`



Discussion:
Yep, you are right about this. That's because how I implemented versioning. Code from `develop` branch will report versions with `0.0.0devTIMESTAMP` format. Code from `master` reports only the version.

The branch information is detected at runtime and for already packed packages the version will not contain the dev part.

We need to look on how others are doing this as I not want to have to modify the SCM to increase the version on development builds. Any kind of help is welcomed!


Resolving patch:
diff --git a/jira/client.py b/jira/client.py
--- a/jira/client.py
+++ b/jira/client.py
@@ -236,6 +236,10 @@ def __init__(self, server=None, options=None, basic_auth=None, oauth=None, jwt=N
         :param async: To enable async requests for those actions where we implemented it, like issue update() or delete().
         Obviously this means that you cannot rely on the return code when this is enabled.
         """
+        # force a copy of the tuple to be used in __del__() because
+        # sys.version_info could have already been deleted in __del__()
+        self.sys_version_info = tuple([i for i in sys.version_info])
+
         if options is None:
             options = {}
             if server and hasattr(server, 'keys'):
@@ -330,8 +334,15 @@ def _check_update_(self):
     def __del__(self):
         session = getattr(self, "_session", None)
         if session is not None:
-            if sys.version_info < (3, 4, 0):  # workaround for https://github.com/kennethreitz/requests/issues/2303
-                session.close()
+            if self.sys_version_info < (3, 4, 0):  # workaround for https://github.com/kennethreitz/requests/issues/2303
+                try:
+                    session.close()
+                except TypeError:
+                    # TypeError: "'NoneType' object is not callable"
+                    # Could still happen here because other references are also
+                    # in the process to be torn down, see warning section in
+                    # https://docs.python.org/2/reference/datamodel.html#object.__del__
+                    pass
 
     def _check_for_html_error(self, content):
         # TODO: Make it return errors when content is a webpage with errors


Test patch:
Repository: pycontribs/jira

Issue:
Deleting Attachments
Is there a way to delete attachments from issues?


Discussion:

Resolving patch:
diff --git a/jira/client.py b/jira/client.py
--- a/jira/client.py
+++ b/jira/client.py
@@ -578,6 +578,14 @@ def file_stream():
             raise JIRAError("Added empty attachment via %s method?!: r: %s\nattachment: %s" % (method, r, attachment))
         return attachment
 
+    def delete_attachment(self, id):
+        """Delete attachment by id.
+
+        :param id: ID of the attachment to delete
+        """
+        url = self._get_url('attachment/' + str(id))
+        return self._session.delete(url)
+
     # Components
 
     def component(self, id):


Test patch:
Repository: pycontribs/jira

Issue:
jira 1.0.10 implements the state parameter of sprints() incorrectly
When retrieving sprints for a board using .../board/{id}/sprint, it is possible to filter the sprints by state ('closed', 'active', 'future') JIRA 7.x expects the state parameter to be a single string with the state values inside it (e.g. 'active,future'), but the JIRA.sprints() method splits this parameter into a list ('active,future' => ['active', 'future']) As a result, only sprints matching the first state value supplied are returned.

The following should be removed from the sprints() method(unless they're needed for backward compatibililty - my knowledge doesn't go back that far)

    params = {}
    if state:
        if isinstance(state, string_types):
            state = state.split(",")
        params['state'] = state

should be

    params = {}
    if state:
        params['state'] = state

(Sorry about lack of diff, pull request, etc, but my code is behind a locked down environment that won't let me pull the diffs out)


Discussion:

Resolving patch:
diff --git a/jira/client.py b/jira/client.py
--- a/jira/client.py
+++ b/jira/client.py
@@ -3145,8 +3145,6 @@ def sprints(self, board_id, extended=False, startAt=0, maxResults=50, state=None
         """
         params = {}
         if state:
-            if isinstance(state, string_types):
-                state = state.split(",")
             params['state'] = state
 
         if self._options['agile_rest_path'] == GreenHopperResource.GREENHOPPER_REST_PATH:


Test patch:
Repository: pycontribs/jira

Issue:
search_issues modifies fields parameter if it is a list
I encountered a side effect of ```search_issue``` method. When I'm passing list of fields as list (not as comma separated string), then that method is doing "translation" and replaced 'key' with 'issuekey' in my list.
Later on when I'm trying to get field (key) as I requested, I'm getting error since issuekey field does not exist in Issue object. **As workaround:** I'm cloning my list of fields before passing it to search_issue method.

**Recommendation**
Do not alter fields parameter inside search_issue method if list is passed (or raise an exception if fields is not a string).

Version I'm using is ```jira==1.0.10```


Discussion:
@gilo-agilo could you provide a code example?

Resolving patch:
diff --git a/jira/client.py b/jira/client.py
--- a/jira/client.py
+++ b/jira/client.py
@@ -2063,8 +2063,9 @@ def search_issues(self, jql_str, startAt=0, maxResults=50, validate_query=True,
         """
         if fields is None:
             fields = []
-
-        if isinstance(fields, string_types):
+        elif isinstance(fields, list):
+            fields = fields.copy()
+        elif isinstance(fields, string_types):
             fields = fields.split(",")
 
         # this will translate JQL field names to REST API Name


Test patch:
Repository: pycontribs/jira

Issue:
Jira response (class: Issue ) is not picklable
looks like Issue class is not pickable

```
sqlalchemy.exc.InvalidRequestError: This Session's transaction has been rolled back due to a previous exception during flush. To begin a new transaction with this Session, first issue Session.rollback(). Original exception was: (pickle.PicklingError) Can't pickle <class 'jira.resources.PropertyHolder'>: it's not found as jira.resources.PropertyHolder [SQL: u'INSERT INTO xcom (`key`, value, timestamp, execution_date, task_id, dag_id) VALUES (%s, %s, now(), %s, %s, %s)'] [parameters: [{'task_id': '<task_id>', 'execution_date': datetime.datetime(2016, 12, 13, 0, 4), 'value': [<JIRA Issue: key=u'<project>-1855', id=u'<id>'>], 'key': 'result_set', 'dag_id': '<dag_id>'}]]

```

I also tried this with manual json.dumps to confirm, here is the stacktrace

```
Traceback (most recent call last):
...
.....
.......
"/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/json/__init__.py", line 244, in dumps
    return _default_encoder.encode(obj)
  File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/json/encoder.py", line 207, in encode
    chunks = self.iterencode(o, _one_shot=True)
  File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/json/encoder.py", line 270, in iterencode
    return _iterencode(o, 0)
  File "/usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/lib/python2.7/json/encoder.py", line 184, in default
    raise TypeError(repr(o) + " is not JSON serializable")
TypeError: <JIRA Issue: key=u'<project>-1855', id=u'<id>'> is not JSON serializable
```

Do anybody know how can should I serialize any response from JIRA ?


Discussion:
btw, I am using latest Jira package ( 1.0.7 )
( where version.py has ```VERSION = (1, 0, 6, 'final', 0)``` )
I managed to get an issue to pickle. 

        Changes needed to jira/resources.py

        Replace:
        top = type(str('PropertyHolder'), (object,), raw)
        with
        top = PropertyHolder(raw)

        and add at the end

        class PropertyHolder(object):
        
          def __init__(self, raw):
            __bases__ = raw
Thanks @mdoar , would you please create PR, so the author can accept this.

Resolving patch:
diff --git a/jira/resources.py b/jira/resources.py
--- a/jira/resources.py
+++ b/jira/resources.py
@@ -1000,7 +1000,7 @@ def dict2resource(raw, top=None, options=None, session=None):
     or a ``PropertyHolder`` object (if no ``self`` link is present).
     """
     if top is None:
-        top = type(str('PropertyHolder'), (object,), raw)
+        top = PropertyHolder(raw)
 
     seqs = tuple, list, set, frozenset
     for i, j in iteritems(raw):
@@ -1078,3 +1078,8 @@ def cls_for_resource(resource_literal):
     else:
         # Generic Resource cannot directly be used b/c of different constructor signature
         return UnknownResource
+
+
+class PropertyHolder(object):
+    def __init__(self, raw):
+        __bases__ = raw  # noqa


Test patch:
Repository: pycontribs/jira

Issue:
deactivate_user(username) return 401
**Describe the bug**
When using [deactivate_user(username)](https://jira.readthedocs.io/en/master/_modules/jira/client.html#JIRA.deactivate_user), an error message is returned telling me the following. 
```
text: User failed to authenticate
````
When trying any other operation (delete_user(username)), than deactivate_user the user with the same credentials it works perfectly. So the problem is not that I don't have valid credentials.

**To Reproduce**

Try to use deactivate_user(username) with basic authentication on a Jira Cloud Instance 

**Expected behavior**
user gets disabled and method is returning ```True```

**Stack Trace**

```
WARNING:root:Got recoverable error from POST https://domain.atlassian.net/admin/rest/um/1/user/deactivate?username=peter.pan, will retry [1/3] in 18.438257315360556s. Err: 401
WARNING:root:Got recoverable error from POST https://domain.atlassian.net/admin/rest/um/1/user/deactivate?username=peter.pan, will retry [2/3] in 25.891688874514557s. Err: 401
WARNING:root:Got recoverable error from POST https://domain.atlassian.net/admin/rest/um/1/user/deactivate?username=peter.pan, will retry [3/3] in 5.049205019874988s. Err: 401
Error Deactivating peter.pan: JiraError HTTP 401 url: https://domain.atlassian.net/admin/rest/um/1/user/deactivate?username=peter.pan
```

```
response headers = {'Server': 'Atlassian Proxy/0.1.305', 'Content-Type': 'text/plain;charset=UTF-8', 'Strict-Transport-Security': 'max-age=315360000; includeSubDomains; preload', 'Date': 'Fri, 03 Aug 2018 10:33:19 GMT', 'X-RateLimit-Limit': '800', 'X-RateLimit-Reset': '1533292409', 'X-Application-Context': 'application:prod-east:8080', 'IdPlat-Outstanding-Token': 'none', 'X-XSS-Protection': '1; mode=block', 'X-Content-Type-Options': 'nosniff', 'Connection': 'keep-alive', 'X-RateLimit-Remaining': '796', 'Content-Length': '27'}
```

**Version Information**
Python Interpreter: 3.7
jira-python: 2.0.0
OS: Mac OS High Sierra (10.13.6)


Discussion:
This seems to have been fixed in d8fc58d09e5090cbd354202539f6af27955570b1 - but no new Release has been made since then.
best install from source - then it will work (however without proxy, as there is still a bug in the implementation regarding that).

i'll create a PR to add the proxy support


Resolving patch:
diff --git a/jira/client.py b/jira/client.py
--- a/jira/client.py
+++ b/jira/client.py
@@ -3109,7 +3109,8 @@ def deactivate_user(self, username):
             url = self._options['server'] + '/admin/rest/um/1/user/deactivate?username=%s' % (username)
             # We can't use our existing session here - this endpoint is fragile and objects to extra headers
             try:
-                r = requests.post(url, headers={'Cookie': self.authCookie, 'Content-Type': 'application/json'}, data={})
+                r = requests.post(url, headers={'Cookie': self.authCookie, 'Content-Type': 'application/json'},
+                                  proxies=self._session.proxies, data={})
                 if r.status_code == 200:
                     return True
                 else:


Test patch:
Repository: conda-forge/conda-smithy

Issue:
Convert scripts to entry points in setup.py



Discussion:
If no one is doing this I can tackle it.  I always wanted to learn how to use `entry_points` ;-)

All yours, @ocefpaf!  I think you'll need to add the .py extension back on the script and update the list of files in setup.py in addition to sing the entry point.


Resolving patch:
diff --git a/conda_smithy/__init__.py b/conda_smithy/__init__.py
--- a/conda_smithy/__init__.py
+++ b/conda_smithy/__init__.py
@@ -0,0 +1,3 @@
+from __future__ import absolute_import
+
+from . import configure_circle_ci, configure_feedstock
diff --git a/scripts/conda-smithy b/conda_smithy/conda_smithy.py
similarity index 98%
rename from scripts/conda-smithy
rename to conda_smithy/conda_smithy.py
--- a/scripts/conda-smithy
+++ b/conda_smithy/conda_smithy.py
@@ -1,9 +1,11 @@
 #!/usr/bin/env python
-from __future__ import print_function
+from __future__ import print_function, absolute_import
+
 import os
 import requests
 import subprocess
 import sys
+import argparse
 
 from conda_build.metadata import MetaData
 
@@ -131,7 +133,7 @@ def __call__(self, args):
         configure_circle_ci.add_project_to_travis(owner, repo)
 
 
-if __name__ == '__main__':
+def main():
 #     UX:
 #         conda-smithy init /path/to/udunits-recipe ./
 #         conda-smithy github-create ./ --organization=conda-forge --remote-name=upstream
@@ -143,8 +145,6 @@ def __call__(self, args):
 
 #        conda smithy clone-all
 
-    import argparse
-
     parser = argparse.ArgumentParser("conda-smithy - conda recipe building, made powerful.")
     subparser = parser.add_subparsers()
     # TODO: Consider allowing plugins/extensions using entry_points.
@@ -162,3 +162,7 @@ def __call__(self, args):
         args = parser.parse_args()
 
     args.subcommand_func(args)
+
+
+if __name__ == '__main__':
+    main()
diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -23,7 +23,8 @@ def main():
         author='Phil Elson',
         author_email='pelson.pub@gmail.com',
         url='https://github.com/conda-forge/conda-smithy',
-        scripts=[os.path.join('scripts', 'conda-smithy')],
+        entry_points=dict(console_scripts=[
+            'conda-smithy = conda_smithy.conda_smithy:main']),
         packages=['conda_smithy',
                   'conda_smithy.feedstock_content',
                   'conda_smithy.feedstock_content.ci_support',


Test patch:
Repository: conda-forge/conda-smithy

Issue:
Calling conda smithy github-create with --user raises exception
When I invoke `oncda smithy` to create a github repo (after setting the token correctly) I get this:

``` python
$ conda smithy github-create --user mwcraig mrjob-feedstock/
Traceback (most recent call last):
  File "/Users/mcraig/miniconda/bin/conda-smithy", line 9, in <module>
    load_entry_point('conda-smithy==0.1.0.dev0', 'console_scripts', 'conda-smithy')()
  File "/Users/mcraig/miniconda/lib/python2.7/site-packages/conda_smithy-0.1.0.dev0-py2.7.egg/conda_smithy/conda_smithy.py", line 164, in main
    args.subcommand_func(args)
  File "/Users/mcraig/miniconda/lib/python2.7/site-packages/conda_smithy-0.1.0.dev0-py2.7.egg/conda_smithy/conda_smithy.py", line 94, in __call__
    user_or_org.get_user(args.user)
UnboundLocalError: local variable 'user_or_org' referenced before assignment
```



Discussion:
https://github.com/conda-forge/conda-smithy/blob/master/conda_smithy/conda_smithy.py#L94

I think that should read `user_or_org = gh.get_user(args.user)`


Resolving patch:
diff --git a/conda_smithy/conda_smithy.py b/conda_smithy/conda_smithy.py
--- a/conda_smithy/conda_smithy.py
+++ b/conda_smithy/conda_smithy.py
@@ -91,7 +91,7 @@ def __call__(self, args):
         if args.user is not None:
             pass
             # User has been defined, and organization has not.
-            user_or_org.get_user(args.user)
+            user_or_org = gh.get_user()
         else:
             # Use the organization provided.
             user_or_org = gh.get_organization(args.organization)


Test patch:
Repository: conda-forge/conda-smithy

Issue:
Improve lint messages on whitespace
The message about the spacing for selectors isn't clear to see the problem in the number of spaces:

`Selectors are suggested to take a " # []" form.`

It would be clearer to have a message like: `<two spaces> # <one space> [selector]`



Discussion:
I agree. I've tried to get some way of rendering it in github appropriately to no avail:

`"  # []"`

form doesn't do what is expected, though it looks like

```
  # []
```

does. Trying various attempts:

`# []`

`&nbsp;&nbsp;#&nbsp;[]`

"&nbsp;&nbsp;#&nbsp;[]"

No matter what, having (`<two spaces>#<one space>[<expression>]`) also helps.

If you are interested in doing it @dopplershift, the line is https://github.com/conda-forge/conda-smithy/blob/master/conda_smithy/lint_recipe.py#L75.


Resolving patch:
diff --git a/conda_smithy/lint_recipe.py b/conda_smithy/lint_recipe.py
--- a/conda_smithy/lint_recipe.py
+++ b/conda_smithy/lint_recipe.py
@@ -85,7 +85,7 @@ def lintify(meta, recipe_dir=None):
                     bad_selectors.append(selector_line)
         if bad_selectors:
             lints.append('Selectors are suggested to take a '
-                         '"  # [<selector>]" form.')
+                         '"<two spaces>#<one space>[<selector>]" form.')
 
     # 7: The build section should have a build number.
     if build_section.get('number', None) is None:


Test patch: