internlm/SWE-Fixer-Train-110K huggingface dataset:
Repository: scipy/scipy

Issue:
DOC: linalg.solve_discrete_lyapunov: dead reference link
### Issue with current documentation:

Reference [1] of the documentation of solve_discrete_lyapunov (https://docs.scipy.org/doc/scipy/reference/generated/scipy.linalg.solve_discrete_lyapunov.html) points to a broken link. 

In any case, I do not see any reference to lyapunov functions in that book (that I found at this link: http://mayoral.iae-csic.org/timeseries2021/hamilton.pdf)

### Idea or request for content:

I have found the direct formula explicitly written down only on Wikipedia: https://en.wikipedia.org/wiki/Lyapunov_equation#Discrete_time

It is also reported in appendix A.2 of this preprint of mine: https://arxiv.org/pdf/2403.14833.pdf


Discussion:
PR with any link fixes/documentation improvements well come
I'm new to open source and looking to contribute to this project. Mind if I open a PR? 

Resolving patch:
diff --git a/scipy/linalg/_solvers.py b/scipy/linalg/_solvers.py
--- a/scipy/linalg/_solvers.py
+++ b/scipy/linalg/_solvers.py
@@ -280,9 +280,8 @@ def solve_discrete_lyapunov(a, q, method=None):
 
     References
     ----------
-    .. [1] Hamilton, James D. Time Series Analysis, Princeton: Princeton
-       University Press, 1994.  265.  Print.
-       http://doc1.lbfl.li/aca/FLMF037168.pdf
+    .. [1] "Lyapunov equation", Wikipedia,
+       https://en.wikipedia.org/wiki/Lyapunov_equation#Discrete_time
     .. [2] Gajic, Z., and M.T.J. Qureshi. 2008.
        Lyapunov Matrix Equation in System Stability and Control.
        Dover Books on Engineering Series. Dover Publications.


Test patch:
Repository: scipy/scipy

Issue:
DOC: Missing blankspace in error message raised by cont2discrete()
### Issue with current documentation:

At the end of the function, the error raised is
```
raise ValueError("Impulse method is only applicable"
                          "to strictly proper systems")
```
which as a result misses a whitespace between applicable and to

### Idea or request for content:

Looking at the way other errors are being raised in the same function, I suggest adding a whitespace at the end of the first string, i.e.
```
raise ValueError("Impulse method is only applicable "
                          "to strictly proper systems")
```

### Additional context (e.g. screenshots, GIFs)

I'm not sure if this falls under documentation exactly, but it's the closest to what this is, please do let me know if there is an intended way to report this.


Discussion:

Resolving patch:
diff --git a/scipy/signal/_lti_conversion.py b/scipy/signal/_lti_conversion.py
--- a/scipy/signal/_lti_conversion.py
+++ b/scipy/signal/_lti_conversion.py
@@ -519,7 +519,7 @@ def cont2discrete(system, dt, method="zoh", alpha=None):
 
     elif method == 'impulse':
         if not np.allclose(d, 0):
-            raise ValueError("Impulse method is only applicable"
+            raise ValueError("Impulse method is only applicable "
                              "to strictly proper systems")
 
         ad = linalg.expm(a * dt)


Test patch:
Repository: scipy/scipy

Issue:
DOC: A typo in authors name in signal.ellipap reference
### Issue with current documentation:

As it stands, the reference [1] in signal.ellipap is given by

> Lutova, Tosic, and Evans, “Filter Design for Signal Processing”, Chapters 5 and 12

### Idea or request for content:

Lutova should be Lutovac (prof. Miroslav Lutovac)

Sources:
[Prof. Lutovac's homepage](http://home.etf.rs/~lutovac/)
[Prof. Lutovac's biography](http://ains.etf.rs/clanstvo/ains.web.dopisni/Lutovac.Miroslav.htm)
[Google books page](https://books.google.rs/books?id=h_MxJeVdWw8C&printsec=frontcover&redir_esc=y#v=onepage&q&f=false)


### Additional context (e.g. screenshots, GIFs)

I'm not sure if non-ascii characters are allowed, but Tosic should really be Tošić as it's written in Serbian, but that's besides the point.


Discussion:

Resolving patch:
diff --git a/scipy/signal/_filter_design.py b/scipy/signal/_filter_design.py
--- a/scipy/signal/_filter_design.py
+++ b/scipy/signal/_filter_design.py
@@ -4562,7 +4562,7 @@ def ellipap(N, rp, rs):
 
     References
     ----------
-    .. [1] Lutova, Tosic, and Evans, "Filter Design for Signal Processing",
+    .. [1] Lutovac, Tosic, and Evans, "Filter Design for Signal Processing",
            Chapters 5 and 12.
 
     .. [2] Orfanidis, "Lecture Notes on Elliptic Filter Design",


Test patch:
Repository: scipy/scipy

Issue:
DOC: A typo in ValueError raised by signal.iirdesign
### Issue with current documentation:

Currently, in signal.iirdesign there is an error message being thrown:
`
raise ValueError("wp and ws must have one or two elements each, and"
                         f"the same shape, got {wp.shape} and {ws.shape}")
`
There is a missing whitespace between the two strings (github messes up the formatting, I can't figure out how to format this properly.
A resulting error message being thrown is 

> ValueError: wp and ws must have one or two elements each, andthe same shape, got (4,) and (2,)

### Idea or request for content:

Again, looking at the existing solutions in the code (although they are not very consistent about this), I suggest adding a whitespace to the end of the first string or the beginning of the other string. There is a slight styling problem where the two solutions are being used interchangably - it doesn't break functionality in any way, it's just not pretty to look at. I suppose I can fix that, it's trivial, but I'm not sure if that's a change worth doing, do let me know.

### Additional context (e.g. screenshots, GIFs)

_No response_


Discussion:
PR welcome if you would like to fix it!
Absolutely, will do in a sec

Resolving patch:
diff --git a/scipy/signal/_filter_design.py b/scipy/signal/_filter_design.py
--- a/scipy/signal/_filter_design.py
+++ b/scipy/signal/_filter_design.py
@@ -2392,7 +2392,7 @@ def iirdesign(wp, ws, gpass, gstop, analog=False, ftype='ellip', output='ba',
     fs = _validate_fs(fs, allow_none=True)
 
     if wp.shape[0] != ws.shape[0] or wp.shape not in [(1,), (2,)]:
-        raise ValueError("wp and ws must have one or two elements each, and"
+        raise ValueError("wp and ws must have one or two elements each, and "
                          f"the same shape, got {wp.shape} and {ws.shape}")
 
     if any(wp <= 0) or any(ws <= 0):
@@ -2403,14 +2403,14 @@ def iirdesign(wp, ws, gpass, gstop, analog=False, ftype='ellip', output='ba',
             if any(wp >= 1) or any(ws >= 1):
                 raise ValueError("Values for wp, ws must be less than 1")
         elif any(wp >= fs/2) or any(ws >= fs/2):
-            raise ValueError("Values for wp, ws must be less than fs/2"
-                             f" (fs={fs} -> fs/2={fs/2})")
+            raise ValueError("Values for wp, ws must be less than fs/2 "
+                             f"(fs={fs} -> fs/2={fs/2})")
 
     if wp.shape[0] == 2:
         if not ((ws[0] < wp[0] and wp[1] < ws[1]) or
                (wp[0] < ws[0] and ws[1] < wp[1])):
-            raise ValueError("Passband must lie strictly inside stopband"
-                             " or vice versa")
+            raise ValueError("Passband must lie strictly inside stopband "
+                             "or vice versa")
 
     band_type = 2 * (len(wp) - 1)
     band_type += 1


Test patch:
Repository: boto/botocore

Issue:
Using botocore without config files, env vars or IAM roles
It's desirable to be able to use botocore entirely standalone - no reliance on configuration files, environment variables or IAM roles.

Currently, it's necessary to do something hacky like this:

```
session = botocore.session.get_session()
service = session.get_service('ec2')

# HACK manually set the botocore credentials object
session._credentials = botocore.credentials.Credentials(
    access_key=__opts__['AWS.id'],
    secret_key=__opts__['AWS.key'],
    )

endpoint = service.get_endpoint(region)
```



Discussion:

Resolving patch:
diff --git a/botocore/session.py b/botocore/session.py
--- a/botocore/session.py
+++ b/botocore/session.py
@@ -147,6 +147,20 @@ def get_config(self):
             self._config = botocore.config.get_config(self)
         return self._config.get(self._profile, None)
 
+    def set_credentials(self, access_key, secret_key):
+        """
+        Create the :class:`botocore.credential.Credential` object
+        associated with this session using the supplied AccessKey and SecretKey
+
+        :type access_key: str
+        :param access_key: The access key part of the credentials.
+
+        :type secret_key: str
+        :param secret_key: The secret key part of the credentials.
+        """
+        self._credentials = botocore.credentials.Credentials(access_key,
+                                                             secret_key)
+
     def get_credentials(self, metadata=None):
         """
         Return the :class:`botocore.credential.Credential` object


Test patch:
Repository: boto/botocore

Issue:
Update dependencies
Hey, could you please update botocore to use Requests 2.0 now that it's released?
http://docs.python-requests.org/en/latest/



Discussion:

Resolving patch:
diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -17,7 +17,7 @@
     'botocore',
 ]
 
-requires = ['requests==1.2.3',
+requires = ['requests==2.0.0',
             'six>=1.1.0',
             'jmespath==0.0.3',
             'python-dateutil>=2.1']


Test patch:
Repository: boto/botocore

Issue:
Response parsing misses the "Message" key in JSON errors
```
{"__type":"AccessDeniedException","Message":"Operation createPipeline is not allowed to be performed with role identity"}
```

This will result in the CLI saying: `A client error (AccessDeniedException) occurred when calling the CreatePipeline operation: Unknown`

I believe this is because we look for "message" but not "Message", but will need investigation to confirm this.



Discussion:

Resolving patch:
diff --git a/botocore/response.py b/botocore/response.py
--- a/botocore/response.py
+++ b/botocore/response.py
@@ -350,9 +350,10 @@ def merge_header_values(self, headers):
             error_type = self.value['__type']
             error = {'Type': error_type}
             del self.value['__type']
-            if 'message' in self.value:
-                error['Message'] = self.value['message']
-                del self.value['message']
+            for key in ['message', 'Message']:
+                if key in self.value:
+                    error['Message'] = self.value[key]
+                    del self.value[key]
             code = self._parse_code_from_type(error_type)
             error['Code'] = code
         elif 'message' in self.value and len(self.value.keys()) == 1:


Test patch:
diff --git a/tests/unit/response_parsing/json/inputs/datapipeline-create-pipeline.json b/tests/unit/response_parsing/json/inputs/datapipeline-create-pipeline.json
new file mode 100644
--- /dev/null
+++ b/tests/unit/response_parsing/json/inputs/datapipeline-create-pipeline.json
@@ -0,0 +1 @@
+{"__type":"AccessDeniedException","Message":"Operation createPipeline is not allowed to be performed with role identity"}
diff --git a/tests/unit/response_parsing/json/outputs/datapipeline-create-pipeline.json b/tests/unit/response_parsing/json/outputs/datapipeline-create-pipeline.json
new file mode 100644
--- /dev/null
+++ b/tests/unit/response_parsing/json/outputs/datapipeline-create-pipeline.json
@@ -0,0 +1,9 @@
+{
+    "Errors": [
+        {
+            "Message": "Operation createPipeline is not allowed to be performed with role identity",
+            "Type": "AccessDeniedException",
+            "Code": "AccessDeniedException"
+        }
+    ]
+}
Repository: boto/botocore

Issue:
Allow stubber to be used with GetBucketLocation
Right now you can't use the `Stubber` object with s3's `get_bucket_location` because it has an override that assumes a body of xml is available. This patch allows the override to be skipped where something (in this case the stubber) has already 'parsed' the response.



Discussion:

Resolving patch:
diff --git a/botocore/service.py b/botocore/service.py
--- a/botocore/service.py
+++ b/botocore/service.py
@@ -186,7 +186,8 @@ def get_waiter(self, waiter_name):
     def _load_waiter_config(self):
         loader = self.session.get_component('data_loader')
         api_version = self.api_version
-        config = loader.load_data('aws/%s/%s.waiters' % (self.endpoint_prefix, api_version))
+        config = loader.load_data('aws/%s/%s.waiters' % (
+            self.service_name, api_version))
         config = denormalize_waiters(config['waiters'])
         return config
 


Test patch:
diff --git a/tests/integration/test_emr.py b/tests/integration/test_emr.py
new file mode 100644
--- /dev/null
+++ b/tests/integration/test_emr.py
@@ -0,0 +1,49 @@
+# Copyright 2014 Amazon.com, Inc. or its affiliates. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License"). You
+# may not use this file except in compliance with the License. A copy of
+# the License is located at
+#
+# http://aws.amazon.com/apache2.0/
+#
+# or in the "license" file accompanying this file. This file is
+# distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
+# ANY KIND, either express or implied. See the License for the specific
+# language governing permissions and limitations under the License.
+import unittest
+
+import botocore.session
+from botocore.paginate import DeprecatedPageIterator
+
+
+# I consider these integration tests because they're
+# testing more than a single unit, we're ensuring everything
+# accessible from the session works as expected.
+class TestEMRGetExtraResources(unittest.TestCase):
+    def setUp(self):
+        self.session = botocore.session.get_session()
+        self.service = self.session.get_service('emr')
+        self.endpoint = self.service.get_endpoint('us-west-2')
+
+    def test_can_access_pagination_configs(self):
+        # Using an operation that we know will paginate.
+        operation = self.service.get_operation('ListClusters')
+        paginator = operation.paginate(self.endpoint)
+        self.assertIsInstance(paginator, DeprecatedPageIterator)
+
+    def test_operation_cant_be_paginated(self):
+        operation = self.service.get_operation('AddInstanceGroups')
+        with self.assertRaises(TypeError):
+            operation.paginate(self.endpoint)
+
+    def test_can_get_waiters(self):
+        waiter = self.service.get_waiter('ClusterRunning')
+        self.assertTrue(hasattr(waiter, 'wait'))
+
+    def test_waiter_does_not_exist(self):
+        with self.assertRaises(ValueError):
+            self.service.get_waiter('DoesNotExist')
+
+
+if __name__ == '__main__':
+    unittest.main()
Repository: mito-ds/mito

Issue:
Allow the installer to go pro after the user has already installed!
**Describe the bug**
A clear and concise description of what the bug is.

**To Reproduce**
Steps to reproduce the behavior:
1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error

Please include the relevant dataset if the bug you encountered is dataset specific. Make sure to anonymize the data properly.

**Expected behavior**
A clear and concise description of what you expected to happen.

**Screenshots**
If applicable, add screenshots to help explain your problem.

**Desktop (please complete the following information):**
 - OS: [e.g. Windows 11]
 - Browser [e.g. Chrome, Firefox]
 - Mito Version [e.g. 0.3.331] (you can find this with `pip list`)

**Additional context**
Add any other context about the problem here.



Discussion:

Resolving patch:
diff --git a/mitoinstaller/mitoinstaller/installer_steps/initial_installer_steps.py b/mitoinstaller/mitoinstaller/installer_steps/initial_installer_steps.py
--- a/mitoinstaller/mitoinstaller/installer_steps/initial_installer_steps.py
+++ b/mitoinstaller/mitoinstaller/installer_steps/initial_installer_steps.py
@@ -5,7 +5,7 @@
 from mitoinstaller.commands import upgrade_mito_installer
 from mitoinstaller.installer_steps.installer_step import InstallerStep
 from mitoinstaller.log_utils import identify, log
-from mitoinstaller.user_install import (USER_JSON_PATH,
+from mitoinstaller.user_install import (USER_JSON_PATH, go_pro,
                                         try_create_user_json_file)
 
 
@@ -14,13 +14,15 @@ def initial_install_step_create_user():
     if not os.path.exists(USER_JSON_PATH):
         try_create_user_json_file(is_pro=('--pro' in sys.argv))
 
-    # Only try and log if we're not pro
     if not ('--pro' in sys.argv):
+        # Only try and log if we're not pro
         identify()
         log('install_started', {
             'mitoinstaller_version': __version__
         })
-
+    else:
+        # If the user is going pro, make sure they are set to pro
+        go_pro()
 
 INITIAL_INSTALLER_STEPS = [
     InstallerStep(
diff --git a/mitoinstaller/mitoinstaller/user_install.py b/mitoinstaller/mitoinstaller/user_install.py
--- a/mitoinstaller/mitoinstaller/user_install.py
+++ b/mitoinstaller/mitoinstaller/user_install.py
@@ -97,3 +97,12 @@ def user_json_is_installer_default() -> bool:
             return len(user_json_object) <= len(USER_JSON_DEFAULT)
     except:
         return False
+
+def go_pro() -> None:
+    with open(USER_JSON_PATH, 'r') as f:
+        updated_user_json = json.loads(f.read())
+        updated_user_json['mitosheet_telemetry'] = False
+        updated_user_json['mitosheet_pro'] = True
+    
+    with open(USER_JSON_PATH, 'w') as f:
+        f.write(json.dumps(updated_user_json))
\ No newline at end of file


Test patch:
Repository: mito-ds/mito

Issue:
Cannot use two VLOOKUPS in the same formula 
1. Launch the streamlit app on our homepage
2. Duplicate the dataframe 
3. Write this formula in the duplicated dataframe 
```
=CONCAT(VLOOKUP(date1,df1!date:close, 2), VLOOKUP(date1,df1!date:volume, 3))
```
4. Get an unhelpful execution error 

<img width="1530" alt="Screenshot 2024-03-06 at 1 09 44 PM" src="https://github.com/mito-ds/mito/assets/18709905/b5694450-dbef-482f-9187-d5ece8923bdd">



Discussion:

Resolving patch:
diff --git a/mitosheet/mitosheet/parser.py b/mitosheet/mitosheet/parser.py
--- a/mitosheet/mitosheet/parser.py
+++ b/mitosheet/mitosheet/parser.py
@@ -477,13 +477,14 @@ def get_raw_parser_matches(
 
     for other_sheet_index, sheet_name in enumerate(df_names):
         if safe_contains(formula, f'{sheet_name}!', column_headers):
-            raw_parser_matches.append({
-                'type': '{SHEET}',
-                'substring_range': (formula.index(f'{sheet_name}!'), formula.index(f'{sheet_name}!') + len(sheet_name)),
-                'unparsed': f'{sheet_name}!',
-                'parsed': sheet_name,
-                'row_offset': 0
-            })
+            for match_info in re.finditer(f'{sheet_name}!', formula):
+                raw_parser_matches.append({
+                    'type': '{SHEET}',
+                    'substring_range': (match_info.start(), match_info.end()-1),
+                    'unparsed': f'{sheet_name}!',
+                    'parsed': sheet_name,
+                    'row_offset': 0
+                })
 
             # Update to look at the column headers in the other sheet
             column_headers = deduplicate_array(column_headers + dfs[other_sheet_index].columns.to_list())


Test patch:
diff --git a/mitosheet/mitosheet/tests/test_parse.py b/mitosheet/mitosheet/tests/test_parse.py
--- a/mitosheet/mitosheet/tests/test_parse.py
+++ b/mitosheet/mitosheet/tests/test_parse.py
@@ -1219,6 +1219,27 @@ def test_parse(formula, column_header, formula_label, df, python_code, functions
         'df_1[\'B\'] = SUM(df_1[\'C\'], VLOOKUP(df_1[\'A\'], df_2.loc[:, \'B\':\'C\'], 2))',
         set(['VLOOKUP', 'SUM']),
         set(['A', 'B', 'C'])
+    ),
+    # Test for two calls to VLOOKUP
+    (
+        '=CONCAT(VLOOKUP(A0, df_2!C:D, 2), VLOOKUP(A0, df_2!C:E, 2))',
+        'B',
+        0,
+        [
+            pd.DataFrame(
+                get_number_data_for_df(['A', 'B'], 2),
+                index=pd.RangeIndex(0, 2)
+            ),
+            pd.DataFrame(
+                get_number_data_for_df(['C', 'D', 'E'], 2),
+                index=pd.RangeIndex(0, 2)
+            )
+        ],
+        ['df_1', 'df_2'],
+        0,
+        'df_1[\'B\'] = CONCAT(VLOOKUP(df_1[\'A\'], df_2.loc[:, \'C\':\'D\'], 2), VLOOKUP(df_1[\'A\'], df_2.loc[:, \'C\':\'E\'], 2))',
+        set(['VLOOKUP', 'CONCAT']),
+        set(['A', 'E', 'D', 'C'])
     )
 ]
Repository: yt-dlp/yt-dlp

Issue:
niconico missing metadata
- [x] I'm reporting a broken site support
- [x] I've verified that I'm running yt-dlp version **2021.02.09**
- [x] I've checked that all provided URLs are alive and playable in a browser
- [x] I've checked that all URLs and arguments with special characters are properly quoted or escaped
- [x] I've searched the bugtracker for similar issues including closed ones

On newest commit, uploader name from niconico channels is not fetched. Niconico has 2 types of uploaders: 
`https://www.nicovideo.jp/user/number` and
`https://ch.nicovideo.jp/channelname`

It seems uploads from the 2nd type fail.
For example output templates `"%(uploader)s.%(ext)s"` and `"%(channel)s.%(ext)s"` produce `NA.mp4` for videos from https://ch.nicovideo.jp/anitama-ch 



Discussion:
@bbepis @tsukumijima @kurumigi Could one of you have a look

Resolving patch:
diff --git a/youtube_dlc/extractor/niconico.py b/youtube_dlc/extractor/niconico.py
--- a/youtube_dlc/extractor/niconico.py
+++ b/youtube_dlc/extractor/niconico.py
@@ -546,11 +546,29 @@ def get_video_info_xml(items):
 
         webpage_url = get_video_info_web('watch_url') or url
 
+        # for channel movie and community movie
+        channel_id = try_get(
+            api_data,
+            (lambda x: x['channel']['globalId'],
+             lambda x: x['community']['globalId']))
+        channel = try_get(
+            api_data,
+            (lambda x: x['channel']['name'],
+             lambda x: x['community']['name']))
+
         # Note: cannot use api_data.get('owner', {}) because owner may be set to "null"
         # in the JSON, which will cause None to be returned instead of {}.
         owner = try_get(api_data, lambda x: x.get('owner'), dict) or {}
-        uploader_id = get_video_info_web(['ch_id', 'user_id']) or owner.get('id')
-        uploader = get_video_info_web(['ch_name', 'user_nickname']) or owner.get('nickname')
+        uploader_id = (
+            get_video_info_web(['ch_id', 'user_id'])
+            or owner.get('id')
+            or channel_id
+        )
+        uploader = (
+            get_video_info_web(['ch_name', 'user_nickname'])
+            or owner.get('nickname')
+            or channel
+        )
 
         return {
             'id': video_id,
@@ -561,6 +579,8 @@ def get_video_info_xml(items):
             'uploader': uploader,
             'timestamp': timestamp,
             'uploader_id': uploader_id,
+            'channel': channel,
+            'channel_id': channel_id,
             'view_count': view_count,
             'comment_count': comment_count,
             'duration': duration,


Test patch: