Repository: spack/spack

Issue:
smc cannot be fetched
Url is wrong https://ccse.lbl.gov/ExaCT/SMC.tar.gz

/cc @jiseung

Part of proxyapps/proxy-ci#2


Discussion:

Resolving patch:
diff --git a/var/spack/repos/builtin/packages/amr-exp-parabolic/package.py b/var/spack/repos/builtin/packages/amr-exp-parabolic/package.py
deleted file mode 100644
--- a/var/spack/repos/builtin/packages/amr-exp-parabolic/package.py
+++ /dev/null
@@ -1,95 +0,0 @@
-##############################################################################
-# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
-# Produced at the Lawrence Livermore National Laboratory.
-#
-# This file is part of Spack.
-# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
-# LLNL-CODE-647188
-#
-# For details, see https://github.com/spack/spack
-# Please also see the LICENSE file for our notice and the LGPL.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU Lesser General Public License (as
-# published by the Free Software Foundation) version 2.1, February 1999.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
-# conditions of the GNU Lesser General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this program; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-##############################################################################
-from spack import *
-import glob
-
-
-class AmrExpParabolic(MakefilePackage):
-    """Simplified block-structured adaptive mesh refinement algorithm
-    in two and three dimensions with subcycling in time.
-    The algorithm solves a linear advection diffusion equation
-    with a simple numerical method. This proxy app is intended to
-    capture the communication pattern of an explicit AMR algorithm
-    but does not represent an accurate characterization of
-    floating point effort or
-    relative costs of communication to computation."""
-
-    homepage = "https://ccse.lbl.gov/ExaCT/index.html"
-    url      = "https://ccse.lbl.gov/ExaCT/AMR_Exp_Parabolic.tgz"
-    tags     = ['proxy-app']
-
-    version(
-        'release', '330604d9cc755dad8a2cdfaa7ff8f6a4',
-        url='https://ccse.lbl.gov/ExaCT/AMR_Exp_Parabolic.tgz')
-
-    variant(
-        'debug', default=False, description='Turn on debugging')
-    variant(
-        'mpi', default=True, description='Build with MPI support')
-    variant(
-        'openmp', default=False,
-        description='Build with OpenMP support')
-    variant(
-        'prof', default=False, description='Use profiler')
-
-    depends_on('mpi', when='+mpi')
-    depends_on('gmake', type='build')
-
-    build_directory = 'MiniApps/AMR_Adv_Diff_F90'
-
-    def edit(self, spec, prefix):
-        def_file = FileFilter('Tools/F_mk/GMakedefs.mak')
-        def_file.filter('tdir = t/.*', 'tdir := t/$(suf)')
-        def_file.filter('hdir = t/.*', 'hdir := t/html')
-        def_file.filter('include $(BOXLIB_HOME)/Tools/F_mk/GMakeMPI.mak', '#')
-
-        if '+mpi' in spec:
-            def_file.filter('FC.*:=.*', 'FC = {0}'.format(spec['mpi'].mpifc))
-            def_file.filter('F90.*:=.*', 'F90 = {0}'.format(spec['mpi'].mpifc))
-            def_file.filter(
-                'mpi_include_dir =.*',
-                'mpi_include_dir = {0}'.format(spec['mpi'].prefix.include))
-            def_file.filter(
-                'mpi_lib_dir =.*',
-                'mpi_lib_dir = {0}'.format(spec['mpi'].prefix.lib))
-
-        with working_dir(self.build_directory):
-            makefile = FileFilter('GNUmakefile')
-            if '+debug' in spec:
-                makefile.filter('NDEBUG.*:= t', '#')
-            if '~mpi' in spec:
-                makefile.filter('MPI.*:= t', '#')
-            if '+openmp' in spec:
-                makefile.filter('OMP.*:=', 'OMP := t')
-            if '+prof' in spec:
-                makefile.filter('PROF.*:=', 'PROF := t')
-
-    def install(self, spec, prefix):
-        mkdirp(prefix.bin)
-        files = glob.glob(join_path(self.build_directory, '*.exe'))
-        for f in files:
-            install(f, prefix.bin)
-        install('README.txt', prefix)
-        install('license.txt', prefix)
diff --git a/var/spack/repos/builtin/packages/cns-nospec/package.py b/var/spack/repos/builtin/packages/cns-nospec/package.py
deleted file mode 100644
--- a/var/spack/repos/builtin/packages/cns-nospec/package.py
+++ /dev/null
@@ -1,109 +0,0 @@
-##############################################################################
-# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
-# Produced at the Lawrence Livermore National Laboratory.
-#
-# This file is part of Spack.
-# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
-# LLNL-CODE-647188
-#
-# For details, see https://github.com/spack/spack
-# Please also see the LICENSE file for our notice and the LGPL.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU Lesser General Public License (as
-# published by the Free Software Foundation) version 2.1, February 1999.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
-# conditions of the GNU Lesser General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this program; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-##############################################################################
-from spack import *
-import glob
-
-
-class CnsNospec(MakefilePackage):
-    """A simple, explicit, stencil-based test code for integrating
-    the compressible Navier-Stokes equations. The code uses
-    8th order finite differences in space and a 3rd order,
-    low-storage TVD RK algorithm in time."""
-
-    homepage = "https://ccse.lbl.gov/ExaCT/index.html"
-    url      = "https://ccse.lbl.gov/ExaCT/CNS_Nospec.tgz"
-    tags     = ['proxy-app']
-
-    version('master', '14ff5be62539d829b30b17281688ee3f')
-
-    variant('mpi', default=True, description='Build with MPI support')
-    variant('debug', default=False, description='Build with debugging')
-    variant('omp', default=False, description='Build with OpenMP support')
-    variant('prof', default=False, description='Build with profiling')
-
-    depends_on('mpi', when='+mpi')
-    depends_on('gmake', type='build')
-
-    build_directory = 'MiniApps/CNS_NoSpec'
-
-    def edit(self, spec, prefix):
-        def_file = FileFilter('Tools/F_mk/GMakedefs.mak')
-        def_file.filter('tdir = t/.*', 'tdir := t/$(suf)')
-        def_file.filter('hdir = t/.*', 'hdir := t/html')
-        def_file.filter('include $(BOXLIB_HOME)/Tools/F_mk/GMakeMPI.mak', '#')
-
-        if '+mpi' in spec:
-            def_file.filter('FC.*:=.*', 'FC = {0}'.format(spec['mpi'].mpifc))
-            def_file.filter('F90.*:=.*', 'F90 = {0}'.format(spec['mpi'].mpifc))
-            def_file.filter(
-                'mpi_include_dir =.*',
-                'mpi_include_dir = {0}'.format(spec['mpi'].prefix.include))
-            def_file.filter(
-                'mpi_lib_dir =.*',
-                'mpi_lib_dir = {0}'.format(spec['mpi'].prefix.lib))
-
-        with working_dir(self.build_directory):
-            makefile = FileFilter('GNUmakefile')
-            if '+mpi' in spec:
-                makefile.filter('MPI .*', 'MPI := t')
-            if '+debug' in spec:
-                makefile.filter('NDEBUG.*', '#')
-            if '+omp' in spec:
-                makefile.filter('OMP.*', 'OMP := t')
-            if '+prof' in spec:
-                makefile.filter('PROF.*', 'PROF := t')
-
-            if self.compiler.name == 'gcc':
-                makefile.filter('COMP .*', 'COMP = gfortran')
-            if self.compiler.name == 'intel':
-                makefile.filter('COMP .*', 'COMP = Intel')
-            if self.compiler.name == 'pgi':
-                makefile.filter('COMP .*', 'COMP = PGI')
-            if self.compiler.name == 'xl':
-                makefile.filter('COMP .*', 'COMP = IBM')
-            if self.compiler.name == 'cce':
-                makefile.filter('COMP .*', 'COMP = Cray')
-
-    @property
-    def build_targets(self):
-        spec = self.spec
-        if '+mpi' in spec:
-            return ['CC = {0}'.format(spec['mpi'].mpicc),
-                    'CXX = {0}'.format(spec['mpi'].mpicxx)]
-        else:
-            return []
-
-    def build(self, spec, prefix):
-        with working_dir(self.build_directory):
-            gmake()
-
-    def install(self, spec, prefix):
-        mkdirp(prefix.bin)
-        files = glob.glob(join_path(self.build_directory, '*.exe'))
-        for f in files:
-            install(f, prefix.bin)
-        install('README.txt', prefix)
-        install('license.txt', prefix)
-        install(join_path(self.build_directory, 'README'), prefix)
diff --git a/var/spack/repos/builtin/packages/smc/package.py b/var/spack/repos/builtin/packages/smc/package.py
deleted file mode 100644
--- a/var/spack/repos/builtin/packages/smc/package.py
+++ /dev/null
@@ -1,83 +0,0 @@
-##############################################################################
-# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
-# Produced at the Lawrence Livermore National Laboratory.
-#
-# This file is part of Spack.
-# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
-# LLNL-CODE-647188
-#
-# For details, see https://github.com/spack/spack
-# Please also see the LICENSE file for our notice and the LGPL.
-#
-# This program is free software; you can redistribute it and/or modify
-# it under the terms of the GNU Lesser General Public License (as
-# published by the Free Software Foundation) version 2.1, February 1999.
-#
-# This program is distributed in the hope that it will be useful, but
-# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
-# conditions of the GNU Lesser General Public License for more details.
-#
-# You should have received a copy of the GNU Lesser General Public
-# License along with this program; if not, write to the Free Software
-# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
-##############################################################################
-from spack import *
-import glob
-
-
-class Smc(MakefilePackage):
-    """A minimalist high-order finite difference algorithm
-    for combustion problems. It includes core discretizations
-    for advection, diffusive transport and chemical kinetics.
-    The models for computing diffusive transport coefficients
-    have been replaced by a simplified approximation
-    but the full structure of the discretization of
-    the diffusive terms have been preserved."""
-
-    homepage = "https://ccse.lbl.gov/ExaCT/index.html"
-    url      = "https://ccse.lbl.gov/ExaCT/SMC.tar.gz"
-    tags     = ['proxy-app']
-
-    version('master', '94a4ea94abbc5e61397c2a4d1fb56ed6')
-
-    variant(
-        'mpi', default=True,
-        description='Build with MPI support')
-    variant(
-        'openmp', default=True,
-        description='Build with OpenMP support')
-    variant(
-        'debug', default=False,
-        description='Build with debugging')
-#   variant(
-#       'mic', default=False,
-#       description='Compile for Intel Xeon Phi')
-    variant(
-        'k_use_automatic', default=True,
-        description='Some arrays in kernels.F90 will be automatic')
-
-    depends_on('mpi', when='+mpi')
-    depends_on('gmake', type='build')
-
-    def edit(self, spec, prefix):
-        makefile = FileFilter('GNUmakefile')
-        if '~mpi' in spec:
-            makefile.filter('MPI := t', '#')
-        if '~openmp' in spec:
-            makefile.filter('OMP := t', '#')
-        if '+debug' in spec:
-            makefile.filter('NDEBUG :=', '#')
-        if '~k_use_automatic' in spec:
-            makefile.filter('K_U.*:= t', '#')
-        if self.compiler.name == 'intel':
-            makefile.filter('COMP := .*', 'COMP := Intel')
-
-    def install(self, spec, prefix):
-        mkdirp(prefix.bin)
-        files = glob.glob(join_path(self.build_directory, '*.exe'))
-        for f in files:
-            install(f, prefix.bin)
-        install('inputs_SMC', prefix.bin)
-        install('README', prefix)
-        install('BoxLib.license.txt', prefix)


Test patch: