internlm/SWE-Fixer-Train-110K huggingface dataset:
Repository: borgbackup/borg

Issue:
what is EBUSY?
In #126, there was a mention of EBUSY.

Not familiar with this, when exactly can a file be "busy"?

Is this a platform specific thing?

How to deal with this for backup source files?


Discussion:
EBUSY  Device or resource busy (POSIX.1-2001)
https://pubs.opengroup.org/onlinepubs/9699919799/functions/V2_chap02.html#tag_15_03

> [EBUSY]
> Resource busy. An attempt was made to make use of a system resource that is not currently available, as it is being used by another process in a manner that would have conflicted with the request being made by this process.


https://www.gnu.org/software/libc/manual/html_node/Error-Codes.html
> Macro: int EBUSY
> “Device or resource busy.” A system resource that can’t be shared is already in use. For example, if you try to delete a file that is the root of a currently mounted filesystem,  you get this error.
https://linux.die.net/HOWTO/SCSI-Generic-HOWTO/open.html
https://linux.die.net/HOWTO/SCSI-Generic-HOWTO/errors.html

Resolving patch:
diff --git a/src/borg/archive.py b/src/borg/archive.py
--- a/src/borg/archive.py
+++ b/src/borg/archive.py
@@ -199,6 +199,7 @@ def __exit__(self, exc_type, exc_val, exc_tb):
             E_MAP = {
                 errno.EPERM: BackupPermissionError,
                 errno.EACCES: BackupPermissionError,
+                errno.EBUSY: BackupPermissionError,
                 errno.ENOENT: BackupFileNotFoundError,
                 errno.EIO: BackupIOError,
             }


Test patch:
Repository: borgbackup/borg

Issue:
upgrade cython and msgpack
is borg also affected?

https://github.com/msgpack/msgpack-python/pull/583/files

https://github.com/msgpack/msgpack-python/issues/579#issuecomment-1972893890

https://github.com/msgpack/msgpack-python/releases/tag/v1.0.8

https://github.com/cython/cython/issues/5724


Discussion:

Resolving patch:
diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -70,7 +70,7 @@
     # Please note:
     # using any other msgpack version is not supported by borg development and
     # any feedback related to issues caused by this will be ignored.
-    'msgpack >=0.5.6, <=1.0.7, !=1.0.1',
+    'msgpack >=0.5.6, <=1.0.8, !=1.0.1',
     'packaging',
 ]
 
diff --git a/src/borg/helpers/msgpack.py b/src/borg/helpers/msgpack.py
--- a/src/borg/helpers/msgpack.py
+++ b/src/borg/helpers/msgpack.py
@@ -182,7 +182,7 @@ def is_slow_msgpack():
 def is_supported_msgpack():
     # DO NOT CHANGE OR REMOVE! See also requirements and comments in setup.py.
     import msgpack
-    return (0, 5, 6) <= msgpack.version <= (1, 0, 7) and \
+    return (0, 5, 6) <= msgpack.version <= (1, 0, 8) and \
            msgpack.version not in [(1, 0, 1), ]  # < add bad releases here to deny list
 
 


Test patch:
Repository: borgbackup/borg

Issue:
upgrade cython and msgpack
is borg also affected?

https://github.com/msgpack/msgpack-python/pull/583/files

https://github.com/msgpack/msgpack-python/issues/579#issuecomment-1972893890

https://github.com/msgpack/msgpack-python/releases/tag/v1.0.8

https://github.com/cython/cython/issues/5724


Discussion:

Resolving patch:
diff --git a/src/borg/helpers/msgpack.py b/src/borg/helpers/msgpack.py
--- a/src/borg/helpers/msgpack.py
+++ b/src/borg/helpers/msgpack.py
@@ -137,7 +137,7 @@ def is_slow_msgpack():
 def is_supported_msgpack():
     # DO NOT CHANGE OR REMOVE! See also requirements and comments in pyproject.toml.
     import msgpack
-    return (1, 0, 3) <= msgpack.version <= (1, 0, 7) and \
+    return (1, 0, 3) <= msgpack.version <= (1, 0, 8) and \
            msgpack.version not in []  # < add bad releases here to deny list
 
 


Test patch:
Repository: borgbackup/borg

Issue:
upgrade cython and msgpack
is borg also affected?

https://github.com/msgpack/msgpack-python/pull/583/files

https://github.com/msgpack/msgpack-python/issues/579#issuecomment-1972893890

https://github.com/msgpack/msgpack-python/releases/tag/v1.0.8

https://github.com/cython/cython/issues/5724


Discussion:

Resolving patch:
diff --git a/src/borg/helpers/msgpack.py b/src/borg/helpers/msgpack.py
--- a/src/borg/helpers/msgpack.py
+++ b/src/borg/helpers/msgpack.py
@@ -209,7 +209,7 @@ def is_supported_msgpack():
 
     if msgpack.version in []:  # < add bad releases here to deny list
         return False
-    return (1, 0, 3) <= msgpack.version <= (1, 0, 7)
+    return (1, 0, 3) <= msgpack.version <= (1, 0, 8)
 
 
 def get_limited_unpacker(kind):


Test patch:
Repository: borgbackup/borg

Issue:
pytest startdir: py.path.local argument is deprecated
```
/vagrant/borg/borg/.tox/py311-none/lib/python3.11/site-packages/borg/testsuite/conftest.py:41:

PytestRemovedIn9Warning: The (startdir: py.path.local) argument is deprecated,
please use (start_path: pathlib.Path)
```
see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path



Discussion:

Resolving patch:
diff --git a/src/borg/testsuite/conftest.py b/src/borg/testsuite/conftest.py
--- a/src/borg/testsuite/conftest.py
+++ b/src/borg/testsuite/conftest.py
@@ -33,7 +33,7 @@ def clean_env(tmpdir_factory, monkeypatch):
     monkeypatch.setenv("BORG_TESTONLY_WEAKEN_KDF", "1")
 
 
-def pytest_report_header(config, startdir):
+def pytest_report_header(config, start_path):
     tests = {
         "BSD flags": has_lchflags,
         "fuse2": has_llfuse,


Test patch:
Repository: borgbackup/borg

Issue:
pytest startdir: py.path.local argument is deprecated
```
/vagrant/borg/borg/.tox/py311-none/lib/python3.11/site-packages/borg/testsuite/conftest.py:41:

PytestRemovedIn9Warning: The (startdir: py.path.local) argument is deprecated,
please use (start_path: pathlib.Path)
```
see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path



Discussion:

Resolving patch:
diff --git a/src/borg/testsuite/conftest.py b/src/borg/testsuite/conftest.py
--- a/src/borg/testsuite/conftest.py
+++ b/src/borg/testsuite/conftest.py
@@ -38,7 +38,7 @@ def clean_env(tmpdir_factory, monkeypatch):
         monkeypatch.delenv(key, raising=False)
 
 
-def pytest_report_header(config, startdir):
+def pytest_report_header(config, start_path):
     tests = {
         "BSD flags": has_lchflags,
         "fuse2": has_llfuse,


Test patch:
Repository: borgbackup/borg

Issue:
pytest startdir: py.path.local argument is deprecated
```
/vagrant/borg/borg/.tox/py311-none/lib/python3.11/site-packages/borg/testsuite/conftest.py:41:

PytestRemovedIn9Warning: The (startdir: py.path.local) argument is deprecated,
please use (start_path: pathlib.Path)
```
see https://docs.pytest.org/en/latest/deprecations.html#py-path-local-arguments-for-hooks-replaced-with-pathlib-path



Discussion:

Resolving patch:
diff --git a/conftest.py b/conftest.py
--- a/conftest.py
+++ b/conftest.py
@@ -38,7 +38,7 @@ def clean_env(tmpdir_factory, monkeypatch):
         monkeypatch.delenv(key, raising=False)
 
 
-def pytest_report_header(config, startdir):
+def pytest_report_header(config, start_path):
     tests = {
         "BSD flags": has_lchflags,
         "fuse2": has_llfuse,


Test patch:
Repository: Cloud-CV/EvalAI

Issue:
Add approved_by_admin field in Challenge Model



Discussion:

Resolving patch:
diff --git a/apps/challenges/migrations/0011_approved_by_admin_field_added.py b/apps/challenges/migrations/0011_approved_by_admin_field_added.py
new file mode 100644
--- /dev/null
+++ b/apps/challenges/migrations/0011_approved_by_admin_field_added.py
@@ -0,0 +1,20 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.10.2 on 2017-01-10 23:47
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('challenges', '0010_update_upload_folder_names'),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name='challenge',
+            name='approved_by_admin',
+            field=models.BooleanField(default=False, verbose_name='Approved By Admin'),
+        ),
+    ]
diff --git a/apps/challenges/models.py b/apps/challenges/models.py
--- a/apps/challenges/models.py
+++ b/apps/challenges/models.py
@@ -31,6 +31,8 @@ class Challenge(TimeStampedModel):
     participant_teams = models.ManyToManyField(ParticipantTeam, blank=True)
     is_disabled = models.BooleanField(default=False)
     evaluation_script = models.FileField(default=False, upload_to="evaluation_scripts")  # should be zip format
+    approved_by_admin = models.BooleanField(
+        default=False, verbose_name="Approved By Admin")
 
     class Meta:
         app_label = 'challenges'


Test patch:
Repository: Cloud-CV/EvalAI

Issue:
Participant teams not showing up
The participant teams to which the user has been invited does not show up if that user logs in.

For instance: User A creates a team ABC and invites User B
User B logs in, and goes to  the participant teams page. 
User B does not see team ABC. 


Discussion:

Resolving patch:
diff --git a/apps/participants/views.py b/apps/participants/views.py
--- a/apps/participants/views.py
+++ b/apps/participants/views.py
@@ -27,8 +27,9 @@
 def participant_team_list(request):
 
     if request.method == 'GET':
+        participant_teams_id = Participant.objects.filter(user_id=request.user).values_list('team_id', flat=True)
         participant_teams = ParticipantTeam.objects.filter(
-            created_by=request.user)
+            id__in=participant_teams_id)
         paginator, result_page = paginated_queryset(participant_teams, request)
         serializer = ParticipantTeamSerializer(result_page, many=True)
         response_data = serializer.data


Test patch:
diff --git a/tests/unit/participants/test_views.py b/tests/unit/participants/test_views.py
--- a/tests/unit/participants/test_views.py
+++ b/tests/unit/participants/test_views.py
@@ -45,6 +45,12 @@ class GetParticipantTeamTest(BaseAPITestClass):
     def setUp(self):
         super(GetParticipantTeamTest, self).setUp()
 
+        self.participant = Participant.objects.create(
+            user=self.user,
+            status=Participant.ACCEPTED,
+            team=self.participant_team
+        )
+
     def test_get_challenge(self):
         expected = [
             {
Repository: Cloud-CV/EvalAI

Issue:
Create a ContactUs django model 
Create a django model `ContactUs` with the following fields:

- Name
- Email
- Message
- CreatedAt

Note: Use the TimeStampedModel from base app. 
@TroJan do we need to store some more fields? 


Discussion:
@deshraj shall i try this and issue 563?? we need to make seperate app for contact us and does the person contacting require to be logged in??


Resolving patch:
diff --git a/apps/contactUs/models.py b/apps/contactUs/models.py
new file mode 100644
--- /dev/null
+++ b/apps/contactUs/models.py
@@ -0,0 +1,19 @@
+from __future__ import unicode_literals
+
+from django.db import models
+
+from base.models import (TimeStampedModel, )
+
+
+class Contact(TimeStampedModel):
+    """Model representing details of User submitting queries."""
+    name = models.CharField(max_length=100,)
+    email = models.EmailField(max_length=70,)
+    message = models.CharField(max_length=500,)
+
+    def __unicode__(self):
+        return "%s: %s: %s" % (self.name, self.email, self.message)
+
+    class Meta:
+        app_label = 'contactUs'
+        db_table = 'contact'


Test patch:
Repository: Cloud-CV/EvalAI

Issue:
Set default renderer to JSONRenderer in DRF backend
For reference: http://www.django-rest-framework.org/api-guide/renderers/#setting-the-renderers


Discussion:
@deshraj Can I work on this?
Sure. 

Resolving patch:
diff --git a/settings/common.py b/settings/common.py
--- a/settings/common.py
+++ b/settings/common.py
@@ -163,7 +163,10 @@
     'DEFAULT_THROTTLE_RATES': {
         'anon': '100/minute',
         'user': '100/minute'
-    }
+    },
+    'DEFAULT_RENDERER_CLASSES': (
+        'rest_framework.renderers.JSONRenderer',
+    )
 }
 
 # ALLAUTH SETTINGS


Test patch:
Repository: Cloud-CV/EvalAI

Issue:
Add field named method_name in Submission model
_What ?_

Add a field named `method_name` in `Submission` model of `jobs` app. The field should be a CharField with maximum length as 1000. The field will be nullable.

_Why ?_

So that a user or challenge host can track which method(like KNN, etc) is being used to make a submission.
It is optional because many a times no such definite name of function need not be present.

_How ?_

This issue will involve updating `Submission` model of `jobs` app. A CharField with a maximum length of 1000 which can be null will be added. Corresponding to this change, a named migration will also be added.

_Impact/Learning ?_

Learning about various types of [Django model fields](https://docs.djangoproject.com/en/1.10/ref/models/fields/). Also a bit about what are [Django migration](https://docs.djangoproject.com/en/1.10/topics/migrations/) and how they work.


Discussion:
@TroJan  Can I work on this?
@RishabhJain2018 : sure :)

Resolving patch:
diff --git a/apps/jobs/migrations/0003_added_method_name_field.py b/apps/jobs/migrations/0003_added_method_name_field.py
new file mode 100644
--- /dev/null
+++ b/apps/jobs/migrations/0003_added_method_name_field.py
@@ -0,0 +1,20 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.10.2 on 2017-03-11 07:07
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('jobs', '0002_path_fix_for_submission_files'),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name='submission',
+            name='method_name',
+            field=models.CharField(max_length=1000, null=True),
+        ),
+    ]
diff --git a/apps/jobs/models.py b/apps/jobs/models.py
--- a/apps/jobs/models.py
+++ b/apps/jobs/models.py
@@ -74,6 +74,7 @@ class Submission(TimeStampedModel):
     stdout_file = models.FileField(upload_to=RandomFileName("submission_files/submission_{id}"), null=True, blank=True)
     stderr_file = models.FileField(upload_to=RandomFileName("submission_files/submission_{id}"), null=True, blank=True)
     execution_time_limit = models.PositiveIntegerField(default=300)
+    method_name = models.CharField(max_length=1000, null=True)
 
     def __unicode__(self):
         return '{}'.format(self.id)


Test patch:
Repository: Cloud-CV/EvalAI

Issue:
Change binding key for submission worker
__Problem__

Presently submission worker creates an exclusive queue and binds on that queue with a key of `challenge.add.*`.

__Why__ ?

The key needs to be changed because we need to add support for editing of challenge file also. In the future we will bind on key `challenge.*.*` and then add a check in the code to take action accordingly

__Impact__ ?

It will extend submission worker to add support for scenarios where challenge related files are being edited.

__How__ ?

The relevant code is in file `scripts/workers/submission_worker.py`. Ideally the key should now be `challenge.*.*`

__TakeAways__

About RabbitMq, Exlcusive Queue and binding keys


Discussion:
@TroJan Can I work on this?

Resolving patch:
diff --git a/scripts/workers/submission_worker.py b/scripts/workers/submission_worker.py
--- a/scripts/workers/submission_worker.py
+++ b/scripts/workers/submission_worker.py
@@ -481,7 +481,7 @@ def main():
 
     channel.queue_bind(
         exchange=settings.RABBITMQ_PARAMETERS['EVALAI_EXCHANGE']['NAME'],
-        queue=add_challenge_queue_name, routing_key='challenge.add.*')
+        queue=add_challenge_queue_name, routing_key='challenge.*.*')
     channel.basic_consume(add_challenge_callback, queue=add_challenge_queue_name)
 
     channel.start_consuming()


Test patch:
Repository: Cloud-CV/EvalAI

Issue:
Add nullable attribute to the Team Model
Following changes are required in the Team model: 

- [x] Convert the URLFields to CharField with URL

- [x] Change the fields `email`, `github_url`, `linkedin_url`, `personal_website` to nullable fields


Discussion:
@deshraj Can I work on this?
Yeah sure. Go ahead. :) 

@deshraj Can we use [slugfield](https://docs.djangoproject.com/en/1.8/ref/models/fields/#slugfield) for task 1? 
No, can you please change them with `CharField` ? 
@deshraj okay sure.

Resolving patch:
diff --git a/apps/web/migrations/0004_change_team_model_field_type.py b/apps/web/migrations/0004_change_team_model_field_type.py
new file mode 100644
--- /dev/null
+++ b/apps/web/migrations/0004_change_team_model_field_type.py
@@ -0,0 +1,35 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.10.2 on 2017-03-19 21:06
+from __future__ import unicode_literals
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('web', '0003_added_description_and_background_image_to_team_model'),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name='team',
+            name='email',
+            field=models.EmailField(max_length=70, null=True),
+        ),
+        migrations.AlterField(
+            model_name='team',
+            name='github_url',
+            field=models.CharField(max_length=200, null=True),
+        ),
+        migrations.AlterField(
+            model_name='team',
+            name='linkedin_url',
+            field=models.CharField(max_length=200, null=True),
+        ),
+        migrations.AlterField(
+            model_name='team',
+            name='personal_website',
+            field=models.CharField(max_length=200, null=True),
+        ),
+    ]
diff --git a/apps/web/models.py b/apps/web/models.py
--- a/apps/web/models.py
+++ b/apps/web/models.py
@@ -32,13 +32,13 @@ class Team(models.Model):
     )
 
     name = models.CharField(max_length=100)
-    email = models.EmailField(max_length=70)
+    email = models.EmailField(max_length=70, null=True)
     description = models.TextField(null=True)
     headshot = models.ImageField(upload_to="headshots", null=True, blank=True)
     visible = models.BooleanField(default=True)
-    github_url = models.URLField(max_length=200)
-    linkedin_url = models.URLField(max_length=200)
-    personal_website = models.URLField(max_length=200)
+    github_url = models.CharField(max_length=200, null=True)
+    linkedin_url = models.CharField(max_length=200, null=True)
+    personal_website = models.CharField(max_length=200, null=True)
     background_image = models.ImageField(upload_to="bg-images", null=True, blank=True)
     team_type = models.CharField(choices=TEAM_TYPE_OPTIONS, max_length=50)
 


Test patch:
Repository: Cloud-CV/EvalAI

Issue:
Add default field in test_annotation field of ChallengePhase model.
Please add `default=False` in the test_annotation field of ChallengePhase model.


Discussion:
Assigning it to you. :) 


Resolving patch:
diff --git a/apps/challenges/models.py b/apps/challenges/models.py
--- a/apps/challenges/models.py
+++ b/apps/challenges/models.py
@@ -98,7 +98,7 @@ class ChallengePhase(TimeStampedModel):
     challenge = models.ForeignKey('Challenge')
     is_public = models.BooleanField(default=False)
     is_submission_public = models.BooleanField(default=False)
-    test_annotation = models.FileField(upload_to=RandomFileName("test_annotations"))
+    test_annotation = models.FileField(upload_to=RandomFileName("test_annotations"), default=False)
     max_submissions_per_day = models.PositiveIntegerField(default=100000)
     max_submissions = models.PositiveIntegerField(default=100000)
     codename = models.CharField(max_length=100, default="Phase Code Name")


Test patch:
diff --git a/apps/challenges/migrations/0026_adds_default_field_in_test_annotation.py b/apps/challenges/migrations/0026_adds_default_field_in_test_annotation.py
new file mode 100644
--- /dev/null
+++ b/apps/challenges/migrations/0026_adds_default_field_in_test_annotation.py
@@ -0,0 +1,21 @@
+# -*- coding: utf-8 -*-
+# Generated by Django 1.10.2 on 2017-04-10 19:23
+from __future__ import unicode_literals
+
+import base.utils
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ('challenges', '0025_added_is_submission_pubblic_field'),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name='challengephase',
+            name='test_annotation',
+            field=models.FileField(default=False, upload_to=base.utils.RandomFileName('test_annotations')),
+        ),
+    ]
Repository: Cloud-CV/EvalAI

Issue:
RabbitMQ: Connection closed problem
### Issue encountered
```shell
ConnectionClosed: null
  File "workers/submission_worker.py", line 504, in <module>
    main()
  File "workers/submission_worker.py", line 500, in main
    channel.start_consuming()
  File "pika/adapters/blocking_connection.py", line 1681, in start_consuming
    self.connection.process_data_events(time_limit=None)
  File "pika/adapters/blocking_connection.py", line 647, in process_data_events
    self._flush_output(common_terminator)
  File "pika/adapters/blocking_connection.py", line 395, in _flush_output
    raise exceptions.ConnectionClosed()
```

### Cause

It seems like whenever a job is published to the RabbitMQ exchange, then the connection is not closed and it leads to timeout after some time. Note: The issue can be somewhere else also. 


Discussion:
Problem was probably at RabbitMq's end. This [question](http://stackoverflow.com/questions/37321089/rabbitmq-pika-exceptions-connectionclosed) helped a lot in digging.

As of now I have set the heartbeat to zero on server. This can be a permanent fix but waiting to find some better solution 

Resolving patch:
diff --git a/scripts/workers/submission_worker.py b/scripts/workers/submission_worker.py
--- a/scripts/workers/submission_worker.py
+++ b/scripts/workers/submission_worker.py
@@ -458,7 +458,7 @@ def main():
 
     load_active_challenges()
     connection = pika.BlockingConnection(pika.ConnectionParameters(
-        host=settings.RABBITMQ_PARAMETERS['HOST']))
+        host=settings.RABBITMQ_PARAMETERS['HOST'], heartbeat_interval=0))
 
     channel = connection.channel()
     channel.exchange_declare(


Test patch: