VCFtools - 0.1.17 (C) Adam Auton and Anthony Marcketta 2009 Parameters as interpreted: --gzvcf ../filter.vcf.gz --keep group1.list --freq --out group1 Using zlib version: 1.3.1 Warning: Expected at least 2 parts in INFO entry: ID=PR,Number=0,Type=Flag,Description="Provisional reference allele, may not be based on real reference genome"> Keeping individuals in 'keep' list After filtering, kept 5 out of 10 Individuals Outputting Frequency Statistics... After filtering, kept 33862 out of a possible 33862 Sites Run Time = 0.00 seconds