In this task, you're given a paragraph from the research paper and your task is to generate a suitable title for the research paper based on the given paper. Under 100 words is a good title length.

Q: The worldwide outbreak of the swine-origin 2009 H1N1 influenza A virus (IAV) and an increasing number of influenza cases caused by a highly pathogenic avian influenza (HPAI) H5N1 have accelerated the need to develop vaccines and antiviral agents against IAVs. Among various antivirals, neutralizing monoclonal antibodies (mAbs) are considered important passive therapeutics having an immediate effect against viral pathogens. Here we report a pseudovirus neutralization assay for rapid screening of neutralizing mAbs targeting hemagglutinin (HA) of H5N1 and H1N1 IAV. In this study, we generated six pseudoviruses with an HIV-1 backbone, respectively, expressing HA of four clades of H5N1 IAV and the 2009 epidemic H1N1 IAV. The resulting pseudoviruses were able to infect a variety of human and non-human cells, with 293T cells from human kidney as the most susceptible target cells. Using the established pseudovirus neutralization assay, we showed that three of ten selected mAbs specific to HA could potently neutralize infection of a pseudovirus bearing HA from the homologous IAV A/VietNam/1194/ 2004(H5N1) strain. This was highly consistent with the result of a microneutralization assay testing the same strain of a live IAV. Since the pseudovirus neutralization assay does not involve an infectious virus and can be performed without the requirement of a biosafety-3 laboratory, it may be applied for safe and rapid screening of neutralizing mAbs and antiviral agents targeting HA of IAVs.

A: Development of a safe and convenient neutralization assay for rapid screening of influenza HA-specific neutralizing monoclonal antibodies
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Q: Genome Detective is a web-based, user-friendly software application to quickly and accurately assemble all known virus genomes from next generation sequencing datasets. This application allows the identification of phylogenetic clusters and genotypes from assembled genomes in FASTA format. Since its release in 2019, we have produced a number of typing tools for emergent viruses that have caused large outbreaks, such as Zika and Yellow Fever Virus in Brazil. Here, we present The Genome Detective Coronavirus Typing Tool that can accurately identify the novel severe acute respiratory syndrome (SARS) related coronavirus (SARS-CoV-2) sequences isolated in China and around the world. The tool can accept up to 2,000 sequences per submission and the analysis of a new whole genome sequence will take approximately one minute. The tool has been tested and validated with hundreds of whole genomes from ten coronavirus species, and correctly classified all of the SARS-related coronavirus (SARSr-CoV) and all of the available public data for SARS-CoV-2. The tool also allows tracking of new viral mutations as the outbreak expands globally, which may help to accelerate the development of novel diagnostics, drugs and vaccines to stop the COVID-19 disease.

A: Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes
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Q: The demyelinating canine distemper virus (CDV)-leukoencephalitis represents a translational animal model for multiple sclerosis. The present study investigated the expression of type I interferon (IFN-I) pathway members in CDV-induced cerebellar lesions to gain an insight into their role in lesion development. Gene expression of 110 manually selected genes in acute, subacute and chronic lesions was analyzed using pre-existing microarray data. Interferon regulatory factor (IRF) 3, IRF7, signal transducer and activator of transcription (STAT) 1, STAT2, MX protein, protein kinase R (PKR), 2 -5 -oligoadenylate synthetase (OAS) 1 and interferon-stimulated gene (ISG) 15 expression were also evaluated using immunohistochemistry. Cellular origin of STAT1, STAT2, MX and PKR were determined using immunofluorescence. CDV infection caused an increased expression of the antiviral effector proteins MX, PKR, OAS1 and ISG15, which probably contributed to a restricted viral replication, particularly in neurons and oligodendrocytes. This increase might be partly mediated by IRF-dependent pathways due to the lack of changes in IFN-I levels and absence of STAT2 in astrocytes. Nevertheless, activated microglia/macrophages showed a strong expression of STAT1, STAT2 and MX proteins in later stages of the disease, indicating a strong activation of the IFN-I signaling cascade, which might be involved in the aggravation of bystander demyelination. divided into acute (vacuolation of the white matter and mild astrogliosis), subacute (vacuolation and demyelination with mild or no inflammation) and chronic changes (demyelination with moderate to severe inflammation) [8] . The demyelinating distemper leukoencephalitis also represents a naturally occurring animal model for human multiple sclerosis (MS) due to similar histopathological findings and pathogenic mechanisms [3, 9, 10] . Interferons (IFNs) are signaling proteins, which can be classified into three major types based on their specific receptor binding: type I (IFNα and IFNβ), type II (IFNγ) and type III (IFNλ) [11, 12] . Type I IFNs (IFN-I) play an important role in the innate immune response and have antiviral, antiproliferative and immunomodulatory capacities, which are already used in the therapy of human and animal disorders [13, 14] . IFNγ is primarily produced in later stages of the immune response by B cells, cytotoxic T cells and T helper (Th) cells and represents the main activator of macrophages [15] . IFNλ also has antiviral and antiproliferative effects but its role during canine distemper and therapeutic potential seems to be limited [14, [16] [17] [18] [19] [20] . While in human medicine administering IFN-I in MS is part of the standard therapy [21] , the therapeutic effect of IFN-I on the outcome of a CDV infection in dogs is still widely undetermined [14, 22] . The IFN-I pathway is initiated by the detection of typical structural elements of infectious agents (pathogen-associated molecular patterns; PAMPs), which can be recognized by so-called pattern recognition receptors (PRRs) [23] . Single-and double-stranded RNA produced during viral replication can be detected by toll-like receptors (TLRs), protein kinase R (PKR) and the family of the retinoic acid-inducible gene-I-like receptors (RLRs) including retinoic acid-inducible gene 1 (RIG1) and melanoma differentiation-associated gene 5 (MDA5), which are bound to endosomal membranes or localized in the cytoplasm [24] [25] [26] . After binding to viral RNA, these receptors recruit specific adapter proteins like Toll/IL-1 receptor domain containing adapter-inducing IFNβ (TRIF), myeloid differentiation primary response gene 88 (MyD88) and IFNβ promoter stimulator (IPS-1) as well as second messengers to activate IFN regulatory factor (IRF) 3 and IRF7, which induce the transcription of [27] [28] [29] [30] . IFN-I bind in an autocrine or paracrine fashion to their specific receptor, consisting of the subunits IFNAR1 and IFNAR2, to trigger signaling pathways that inhibit viral replication [31] . The receptor-associated kinases Janus kinase 1 (JAK1) and tyrosine kinase 2 (TYK2) phosphorylate the transcription factors, signal transducer and activator of transcription (STAT) 1 and STAT2, which then associate with IRF9 to form a heterotrimeric complex termed interferon-stimulated gene factor 3 (ISGF3) [32] [33] [34] [35] . After translocation into the nucleus, ISGF3 induces the transcription of numerous IFN-stimulated genes (ISGs), which have an IFN-stimulated response element (ISRE) in their promoter site [30, [35] [36] [37] . ISGs including MX proteins, 2 -5 -oligoadenylate synthetase (OAS), PKR and ISG15 play an important role in the resistance to viral infections due to their inhibitory effect on viral transcription, translation and release [30, 38, 39] . In addition, non-canonical aspects of JAK-STAT signaling are described, in which STAT2 homodimers mediate mechanisms of defense against pathogens that impede STAT1 signaling [40, 41] . The presence of IFN-I in the cerebrospinal fluid (CSF) of CDV-infected dogs has been known for a long time and was suggested to be used as a marker of virus persistence, but IFN-I CSF levels are generally low and not always present [42, 43] . An immunohistochemical study demonstrated strong expression of MX proteins in CDV-induced brain lesions [44] . Moreover, recent studies have shown that the virulence of CDV depends on the suppression of the IFN-I signaling pathway via interference with MDA5 and STAT2 signaling [45] . Interestingly, dogs exhibit a relatively high OAS serum activity compared to other animal species such as cats, rabbits and guinea pigs [46] . However, ISG expression has hardly been investigated in the CNS of CDV-infected dogs so far. The present study characterized the expression of several IFN-I pathway members on the gene and protein level in order to contribute to the understanding of the role of the innate immune response in the initiation and progression of CDV-infected cerebellar lesions.

A:
Interferon-Stimulated Genes-Mediators of the Innate Immune Response during Canine Distemper Virus Infection
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