TASK DEFINITION: You are given a background paragraph that describes one or more causal or qualitative relationships such as a relationship in economics or a scientific law and a story that makes use of the concepts or the relationship described in the provided paragraph. You need to come up with a question about the story that requires an understanding of the relationship described in the background paragraph. The generated question should not be answerable without both the background and story. Write a question about the story that requires a relationship in the background paragraph to answer. Check whether your question requires both the background paragraph and the story to answer. If your question can be answered by only one of these, try to rewrite your question so that it requires both. Note that "flipping" a word in the question can give rise to a new question where the answer will be different from the original question. Often, "flipping" a word gives rise to flipping the direction of the relationship, for example, from "increase" to "decrease."
PROBLEM: Background Paragraph: Many mutations have no effect on the proteins they encode. These mutations are considered neutral. Occasionally, a mutation may make a protein even better than it was before. Or the protein might help the organism adapt to a new environment. These mutations are considered beneficial. An example is a mutation that helps bacteria resist antibiotics. Bacteria with the mutation increase in numbers, so the mutation becomes more common. Other mutations are harmful. They may even be deadly. Harmful mutations often result in a protein that no longer can do its job. Some harmful mutations cause cancer or other genetic disorders. 
Story: David is a biochemist with a pharmaceutical company. He is testing three strains of bacteria, case A, case B, and case C. In case A the bacteria does not respond to antibiotics. In case B the bacteria resists antibiotics. Finally, in case C, the bacteria does not develop any immunity to antibiotics and eventually perishes.

SOLUTION: In case B, would the protein become better or worse than in case C?

PROBLEM: Background Paragraph: Wilting is the loss of rigidity of non-woody parts of plants. This occurs when the turgor pressure in non-lignified plant cells falls towards zero, as a result of diminished water in the cells. The rate of loss of water from the plant is greater than the absorption of water in the plant. The process of wilting modifies the leaf angle distribution of the plant (or canopy) towards more erectophile conditions.

Lower water availability may result from:

drought conditions, where the soil moisture drops below conditions most favorable for plant functioning;
the temperature falls to the point where the plants vascular system can not function.
high salinity, which causes water to diffuse from the plant cells and induce shrinkage;
saturated soil conditions, where roots are unable to obtain sufficient oxygen for cellular respiration, and so are unable to transport water into the plant; or
bacteria or fungi that clog the plant's vascular system.
Wilting diminishes the plant's ability to transpire and grow. Permanent wilting leads to plant death. Symptoms of wilting and blights resemble one another. 
Story: Jim had a small veggie garden that he planted every year. His brother Rob had a similar patch, and he was also a gardener. The plants in Jim's garden started wilting at some point and he found out that his soil had high salinity and some harmful bacteria that wiled the plants indirectly. Rob's plant were ok, because he adjusted the soil's ph with sweet lime.

SOLUTION: Which garden had fewer plants wilting?

PROBLEM: Background Paragraph: Arbuscular mycorrhizal fungi vary across many environmental gradients. Their tolerance to freezing and drying is known to shift between AM fungal taxa. AM fungi become less prevalent and diverse at higher soil nutrient and moisture concentrations, presumably because both plants allocate less carbon to AM fungi and AM fungi reallocate their resources to intraradical hyphae in these environmental conditions. Over the long term, these environmental conditions can even create local adaptation between plant hosts, AM fungi and the local soil nutrient concentrations. 
Story: Greg and Paul were two neighbors. They were both into mycology. Greg researched AM fungi, while Paul studied other types of mycorrhizal fungi.

SOLUTION:
Which researcher learned less about AM fungi reallocating their resources to intraradical hyphae?