GitHub repository: lauravongoc/EDIRquery
Primary language: R
Description: EDIRquery provides a tool to search for genes of interest within      the Exome Database of Interspersed Repeats (EDIR). A gene name is a required     input, and users can additionally specify repeat sequence lengths, minimum      and maximum distance between sequences, and whether to allow a 1-bp      mismatch. Outputs include a summary of results by repeat length, as well as      a dataframe of query results. Example data provided includes a subset of the     data for the gene GAA (ENSG00000171298). To query the full database requires     providing a path to the downloaded database files as a parameter.