GitHub repository: praneet1988/ELeFHAnt
Primary language: R
Created: 2021-06-27T17:46:29Z
Description: Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It provides users with a flexibility of choosing a machine learning based classifiers or let ELeFHAnt automatically use the power of robust classifiers like randomForest and SVM (Support Vector Machines) to make predictions. It has three functions 1) CelltypeAnnotation 2) LabelHarmonization 3) DeduceRelationship.