GitHub repository: EidrianGM/FromBed2NetPipeLine
Primary language: Python
Description: Imagine that you have a bed file with genomic windows related to a certain feature. For example to a phenotype. These scripts are gathered in a pipeline and includes a full annotation with bedtools and a gene enrichment analysis (by now is just for list of genes without score associated) performed by TopGo (R library). Lastly an analysis is done with HotNet2 to find modules in a certain biological network (still to be added).