Meistriliiga Champions and top goalscorers Champions and top goalscorers

| Season | Champion | Runner_Up | _3rd_Position | Top_Goalscorers | Teams |
|---|---|---|---|---|---|
| 1992 | Norma | Eesti Põlevkivi | TVMK | Norma | 18 |
| 1992–93 | Norma | Flora | Nikol | Norma | 27 |
| 1993–94 | Flora | Norma | Nikol/Marlekor | Narva Trans | 21 |
| 1994–95 | Flora | Lantana/Marlekor | Narva Trans | Lantana/Marlekor | 25 |
| 1995–96 | Lantana | Flora | Tevalte/Marlekor | Flora | 16 |
| 1996–97 | Lantana | Flora | Marlekor | Lantana | 18 |
| 1997–98 | Flora | Tallinna Sadam | Lantana | Tallinna Sadam | 18 |
| 1998 | Flora | Tallinna Sadam | Lantana | Tallinna Sadam | 13 |
| 1999 | Levadia | Viljandi Tulevik | Flora | Levadia | 19 |
| 2000 | Levadia | Flora | TVMK | TVMK Levadia | 24 |
| 2001 | Flora | TVMK | Levadia | Narva Trans | 37 |
| 2002 | Flora | Levadia | TVMK | TVMK | 37 |
| 2003 | Flora | TVMK | Levadia | Flora | 39 |
| 2004 | Levadia | TVMK | Flora | Flora | 28 |