2006 LFF Lyga 2 Lyga zone South 2 Lyga zone South

| Position_ | Club | Games_played | Wins | Draws | Loses | Goals_scored | Goals_conceded | Points |
|---|---|---|---|---|---|---|---|---|
| 1 | FSK Anykšǒiai | 18 | 12 | 1 | 5 | 37 | 23 | 37 |
| 2 | Vidzgiris Alytus | 18 | 11 | 2 | 5 | 47 | 19 | 35 |
| 3 | Sveikata Kybartai | 18 | 11 | 2 | 5 | 37 | 24 | 35 |
| 4 | Spyris Kaunas | 18 | 10 | 4 | 4 | 35 | 26 | 31 |
| 5 | Utenis Utena | 18 | 7 | 4 | 7 | 29 | 30 | 25 |
| 6 | FK Prienai | 18 | 6 | 3 | 9 | 38 | 41 | 21 |
| 7 | Nevėžis-2 Kėdainiai | 18 | 6 | 3 | 9 | 28 | 35 | 21 |
| 8 | SC-Savingė Kaišiadorys | 18 | 5 | 6 | 7 | 21 | 33 | 21 |
| 9 | LVDK Kaunas | 17 | 4 | 2 | 11 | 28 | 35 | 14 |
| 10 | FK Kalvarija | 17 | 3 | 1 | 13 | 12 | 46 | 10 |