1998–99 Segunda División Final table Final table

| Position_ | Club | Played | Points | Wins | Draws | Losses | Goals_for | Goals_against | Goal_Difference_ |
|---|---|---|---|---|---|---|---|---|---|
| 1 | Málaga CF | 42 | 79 | 22 | 13 | 7 | 72 | 47 | +25 |
| 2 | Atlético de Madrid B 1 | 42 | 74 | 21 | 11 | 10 | 73 | 51 | +22 |
| 3 | CD Numancia | 42 | 73 | 21 | 10 | 11 | 68 | 40 | +28 |
| 4 | Sevilla FC | 42 | 71 | 20 | 11 | 11 | 66 | 50 | +16 |
| 5 | Rayo Vallecano | 42 | 71 | 19 | 14 | 9 | 64 | 49 | +15 |
| 6 | UD Las Palmas | 42 | 68 | 17 | 17 | 8 | 57 | 38 | +19 |
| 7 | CD Toledo | 42 | 65 | 18 | 11 | 13 | 54 | 49 | +5 |
| 8 | SD Compostela | 42 | 61 | 16 | 13 | 13 | 60 | 53 | +7 |