List of RNA structure prediction software Comparative methods Comparative methods

| Name_ | Number_of_sequences_Number_of_sequences_ | Alignment_Alignment_predicts_an_alignment_ | Structure_Structure_predicts_structure_ | Knots_Knots_Pseudoknot_prediction_ | Link |
|---|---|---|---|---|---|
| Murlet | any | yes | yes | no | webserver |
| MXSCARNA | any | yes | yes | no | webserver sourcecode |
| PARTS | 2 | yes | yes | no | sourcecode |
| Pfold | le40 | input | yes | no | webserver |
| PETfold | any | input | yes | no | sourcecode |
| PMcomp/PMmulti | 2le seqs le6 | yes | yes | no | sourcecode, webserver |
| RNAG | any | yes | yes | no | sourcecode |
| R-COFFEE | any | yes | yes | no | sourcecode, webserver |
| TurboFold | any | no | yes | yes | sourcecode |
| RNA123 | any | yes | yes | yes | webserver |
| RNAalifold | any | input | yes | no | homepage |
| RNAcast | any | no | yes | no | sourcecode, webserver |
| RNAforester | any | yes | input | no | sourcecode, webserver |
| RNAmine | any | no | yes | no | webserver |
| RNASampler | any | yes | yes | yes | sourcecode |
| SCARNA | 2 | yes | yes | no | webserver |