PAL Express destinations Philippine Airlines Philippine Airlines

| City | Country | IATA | ICAO | Airport |
|---|---|---|---|---|
| Bacolod | Philippines | BCD | RPVB | Bacolod-Silay International Airport |
| Basco | Philippines | BSO | RPUO | Basco Airport |
| Busuanga | Philippines | USU | RPVV | Francisco B. Reyes Airport |
| Butuan | Philippines | BXU | RPME | Bancasi Airport |
| Cagayan de Oro | Philippines | CGY | RPML | Laguindingan International Airport |
| Calbayog | Philippines | CYP | RPVC | Calbayog Airport |
| Catarman | Philippines | CRM | RPVF | Catarman National Airport |
| Caticlan | Philippines | MPH | RPVE | Godofredo P. Ramos Airport |
| Cebu | Philippines | CEB | RPVM | Mactan-Cebu International Airport |
| Cotabato | Philippines | CBO | RPMC | Awang Airport |
| Davao | Philippines | DVO | RPMD | Francisco Bangoy International Airport |
| Dipolog | Philippines | DPL | RPMG | Dipolog Airport |
| Dubai [begins November 6, 2013] | United Arab Emirates | DXB | OMDB | Dubai International Airport |