List of RNA structure prediction software Comparative methods Comparative methods

| Name_ | Number_of_sequences_Number_of_sequences_ | Alignment_Alignment_predicts_an_alignment_ | Structure_Structure_predicts_structure_ | Knots_Knots_Pseudoknot_prediction_ | Link |
|---|---|---|---|---|---|
| SimulFold | any | yes | yes | yes | sourcecode |
| Stemloc | any | yes | yes | no | sourcecode |
| StrAl | le50 | yes | no | no | sourcecode, webserver |
| TFold | any | yes | yes | yes | webserver |
| WAR | 2le seqs le50 | yes | yes | no | webserver |
| Xrate | any | yes | yes | no | sourcecode |
| Notes: | Notes: | Notes: | Notes: | Notes: | Notes: |