PAL Express destinations Philippine Airlines Philippine Airlines

| City | Country | IATA | ICAO | Airport |
|---|---|---|---|---|
| Dumaguete | Philippines | DGT | RPVD | Sibulan Airport |
| General Santos | Philippines | GES | RPMR | General Santos International Airport |
| Hangzhou | China | HGH | ZSHC | Hangzhou Xiaoshan International Airport |
| Hong Kong | Hong Kong | HKG | VHHH | Hong Kong International Airport |
| Iloilo | Philippines | ILO | RPVI | Iloilo International Airport |
| Jolo | Philippines | JOL | RPMJ | Jolo Airport |
| Kalibo | Philippines | KLO | RPVK | Kalibo International Airport |
| Kuala Lumpur | Malaysia | KUL | WMKK | Kuala Lumpur International Airport |
| Laoag | Philippines | LAO | RPLI | Laoag International Airport |
| Legazpi | Philippines | LGP | RPLP | Legazpi Airport |
| Manila | Philippines | MNL | RPLL | Ninoy Aquino International Airport |
| Masbate | Philippines | MBT | RPVJ | Moises R. Espinosa Airport |
| Naga | Philippines | WNP | RPUN | Naga Airport |
| Ozamiz | Philippines | OZC | RPMO | Labo Airport |