Athletics at the 1999 All-Africa Games Medal table Medal table

| Rank_ | Nation | Gold | Silver | Bronze | Total_ |
|---|---|---|---|---|---|
| 15 | Burkina Faso | 0 | 1 | 0 | 1 |
| 18 | Central African Republic | 0 | 0 | 1 | 1 |
| 18 | Uganda | 0 | 0 | 1 | 1 |
| 18 | Namibia | 0 | 0 | 1 | 1 |
| 18 | Ivory Coast | 0 | 0 | 1 | 1 |