1998–99 ISU Junior Grand Prix Medal table Medal table

| Rank_ | Nation | Gold | Silver | Bronze | Total |
|---|---|---|---|---|---|
| 1 | Russia | 13 | 9 | 8 | 30 |
| 2 | United States | 4 | 8 | 9 | 21 |
| 3 | Ukraine | 6 | 2 | 5 | 13 |
| 4 | Japan | 3 | 2 | 3 | 8 |
| 5 | France | 3 | 1 | 2 | 6 |
| 6 | Italy | 3 | 2 | 0 | 5 |
| 6 | Hungary | 2 | 3 | 0 | 5 |
| 6 | China | 2 | 1 | 2 | 5 |
| 6 | Germany | 0 | 2 | 3 | 5 |
| 7 | Poland | 0 | 2 | 2 | 4 |
| 8 | Canada | 0 | 2 | 1 | 3 |
| 9 | Czech Republic | 0 | 1 | 0 | 1 |
| 9 | Estonia | 0 | 1 | 0 | 1 |
| 9 | United Kingdom | 0 | 0 | 1 | 1 |