2008–09 Football League Trophy Southern Section Southern Section

| Tie_no | Home_team | Score | Away_team | Attendance |
|---|---|---|---|---|
| Brighton & Hove Albion won 5 – 4 on penalties | Brighton & Hove Albion won 5 – 4 on penalties | Brighton & Hove Albion won 5 – 4 on penalties | Brighton & Hove Albion won 5 – 4 on penalties | Brighton & Hove Albion won 5 – 4 on penalties |
| 7 | Gillingham | 0 – 1 | Colchester United | 1557 |
| 8 | Luton Town | 2 – 2 | Brentford | 2029 |
| Luton Town won 4 – 3 on penalties | Luton Town won 4 – 3 on penalties | Luton Town won 4 – 3 on penalties | Luton Town won 4 – 3 on penalties | Luton Town won 4 – 3 on penalties |