2006 Canary Foundation Grand Prix of San Jose Qualifying results Qualifying results

| Name_ | Team | Qual_1 | Qual_2 | Best |
|---|---|---|---|---|
| Sébastien Bourdais | Newman/Haas Racing | 50.160 | 48.989 | 48.989 |
| Paul Tracy | Forsythe Racing | 50.156 | 49.810 | 49.810 |
| A. J. Allmendinger | Forsythe Racing | 50.246 | 49.264 | 49.264 |
| Cristiano da Matta | RuSPORT | 50.734 | 49.659 | 49.659 |
| Oriol Servià | PKV Racing | 50.388 | 49.813 | 49.813 |
| Will Power | Team Australia | — | 49.867 | 49.867 |
| Bruno Junqueira | Newman/Haas Racing | 50.587 | 49.887 | 49.887 |
| Andrew Ranger | Mi-Jack Conquest Racing | 50.925 | 49.962 | 49.962 |
| Dan Clarke | CTE Racing-HVM | 50.278 | 50.161 | 50.161 |
| Mario Domínguez | Dale Coyne Racing | 50.861 | 50.215 | 50.215 |
| Nelson Philippe | CTE Racing-HVM | 50.440 | 50.312 | 50.312 |
| Justin Wilson | RuSPORT | 50.504 | 50.341 | 50.341 |
| Alex Tagliani | Team Australia | 50.373 | — | 50.373 |