2008–09 UEFA Champions League Second qualifying round Second qualifying round

| Team_1 | Agg_ | Team_2 | _1st_leg | _2nd_leg |
|---|---|---|---|---|
| Rangers | 1–2 | Kaunas | 0–0 | 1–2 |
| Brann | 2–2 ( a ) | Ventspils | 1–0 | 1–2 |
| Inter Baku | 1–3 | Partizan | 1–1 | 0–2 |
| Tampere United | 3–7 | Artmedia Petržalka | 1–3 | 2–4 |
| Anorthosis | 4–3 | Rapid Wien | 3–0 | 1–3 |
| Domžale | 2–6 | Dinamo Zagreb | 0–3 | 2–3 |
| Panathinaikos | 3–0 | Dinamo Tbilisi | 3–0 | 0–0 |
| IFK Göteborg | 3–5 | Basel | 1–1 | 2–4 |
| Sheriff Tiraspol | 0–3 | Sparta Prague | 0–1 | 0–2 |
| Drogheda United | 3–4 | Dynamo Kyiv | 1–2 [B ] | 2–2 |
| Anderlecht | 3–4 | BATE Borisov | 1–2 | 2–2 |
| Beitar Jerusalem | 2–6 | Wisła Kraków | 2–1 | 0–5 |
| Fenerbahçe | 7–0 | MTK Hungária | 2–0 | 5–0 |
| Aalborg BK | 7–1 | Modriča | 5–0 | 2–1 |