2006–07 EHF Champions League Qualification Round Qualification Round

| Team_1 | Agg_ | Team_2 | _1st_leg | _2nd_leg |
|---|---|---|---|---|
| Panellinios AC Athens | 47-46 | SPE Strovolos Nicosia | 25-23 | 22-23 |
| Milli Piyango SK | 62-73 | Crvena Zvezda Beograd | 33-37 | 29-36 |
| A1 Bregenz HB | 69-40 | Viking Malt Panevezys | 39-16 | 30-24 |
| HV Kras/Volendan | 48-55 | Brest HC Meshkov | 23-31 | 25-24 |
| C.S. HCM Constanta | 63-54 | Pallamano Conversano.IT | 38-24 | 25-30 |
| RK Metalurg Skopje | 62-55 | ABC de Braga-Andebol SAD | 30-28 | 32-27 |
| H.C. Brechem | 50-80 | Sandefjord TIF | 26-37 | 24-43 |