Philippine Collegiate Champions League 2006–07 CCL Participating teams

| Seed | Team | League | Notes | Eliminated_at |
|---|---|---|---|---|
| 7 | Adamson University Soaring Falcons | UAAP | UAAP 4th place | Round of 16 (eliminated by UV) |
| 8 | Mapua Institute of Technology Cardinals | NCAA | NCAA 4th place | Semifinals (eliminated by UE) |
| 9 | Saint Francis of Assisi College System Doves | NCRAA | NCRAA champion | Round of 16 (eliminated by Mapúa) |
| 10 | University of the Visayas Green Lancers | CESAFI | Visayas-Mindanao qualifier | Quarterfinals (eliminated by San Beda) |
| 11 | University of Cebu Webmasters | CESAFI | Visayas-Mindanao qualifier | Round of 16 (eliminated by Letran) |
| 12 | Emilio Aguinaldo College Generals | UCAA | UCAA champion | Round of 16 (eliminated by UE) |
| 13 | AMA Computer University Titans | NAASCU | NAASCU champion | Round of 16 (eliminated by PCU) |