2008–09 3. Liga Cities and stadia Cities and stadia

| Team | Head_Coach | City | Stadium | Capacity |
|---|---|---|---|---|
| FC Bayern Munich II | Mehmet Scholl (interim) | Munich | Grünwalder Stadion | 10240 |
| Kickers Offenbach | Hans-Jürgen Boysen | Offenbach am Main | Bieberer Berg Stadion | 31500 |
| SC Paderborn 07 | André Schubert (interim) | Paderborn | Paragon Arena | 15300 |
| SSV Jahn Regensburg | Markus Weinzierl | Regensburg | Jahnstadion | 11800 |
| SV Sandhausen | Gerd Dais | Sandhausen | Hardtwaldstadion | 11544 |
| Stuttgarter Kickers | Rainer Kraft | Stuttgart | GAZi-Stadion auf der Waldau | 11436 |
| VfB Stuttgart II | Rainer Adrion | Stuttgart | GAZi-Stadion auf der Waldau | 11436 |
| SpVgg Unterhaching | Ralph Hasenhüttl | Unterhaching | Generali Sportpark | 15053 |
| Wuppertaler SV Borussia | Uwe Fuchs | Wuppertal | Zoo-Stadion | 28000 |