2008–09 UEFA Champions League First qualifying round First qualifying round

| Team_1 | Agg_ | Team_2 | _1st_leg | _2nd_leg |
|---|---|---|---|---|
| Linfield | 1–3 | Dinamo Zagreb | 0–2 | 1–1 |
| Valletta | 0–3 | Artmedia Petržalka | 0–2 | 0–1 |
| Dinamo Tbilisi | 3–1 | NSÍ Runavík | 3–0 | 0–1 |
| FC Santa Coloma | 2–7 | Kaunas | 1–4 | 1–3 |
| Murata | 0–9 | IFK Göteborg | 0–5 | 0–4 |
| Llanelli | 1–4 | Ventspils | 1–0 | 0–4 |
| Anorthosis | 3–0 | Pyunik Yerevan | 1–0 | 2–0 |
| Inter Baku | 1–1 ( a ) | Rabotnički | 0–0 | 1–1 |
| Tampere United | 3–2 | Budućnost | 2–1 | 1–1 |
| F91 Dudelange | 0–3 | Domžale | 0–1 | 0–2 |
| Dinamo Tirana | 1–4 | Modriča | 0–2 | 1–2 |
| Aktobe | 1–4 | Sheriff Tiraspol | 1–0 | 0–4 |
| Drogheda United | 3–1 | Levadia | 2–1 | 1–0 |
| BATE Borisov | 3–0 | Valur | 2–0 | 1–0 |