helmo/github-issues huggingface dataset:
Checksums didn't match for datasets on Google Drive
State: closed | Author: muelletm (NONE)
Labels: name: bug

name: duplicate

## Describe the bug

Datasets hosted on Google Drive do not seem to work right now.
Loading them fails with a checksum error.

## Steps to reproduce the bug
```python
from datasets import load_dataset
for dataset in ["head_qa", "yelp_review_full"]:
  try:
    load_dataset(dataset)
  except Exception as exception:
    print("Error", dataset, exception)
```

Here is a [colab](https://colab.research.google.com/drive/1wOtHBmL8I65NmUYakzPV5zhVCtHhi7uQ#scrollTo=cDzdCLlk-Bo4).

## Expected results

The datasets should be loaded.

## Actual results

```
Downloading and preparing dataset head_qa/es (download: 75.69 MiB, generated: 2.86 MiB, post-processed: Unknown size, total: 78.55 MiB) to /root/.cache/huggingface/datasets/head_qa/es/1.1.0/583ab408e8baf54aab378c93715fadc4d8aa51b393e27c3484a877e2ac0278e9...
Error head_qa Checksums didn't match for dataset source files:
['https://drive.google.com/u/0/uc?export=download&id=1a_95N5zQQoUCq8IBNVZgziHbeM-QxG2t']
Downloading and preparing dataset yelp_review_full/yelp_review_full (download: 187.06 MiB, generated: 496.94 MiB, post-processed: Unknown size, total: 684.00 MiB) to /root/.cache/huggingface/datasets/yelp_review_full/yelp_review_full/1.0.0/13c31a618ba62568ec8572a222a283dfc29a6517776a3ac5945fb508877dde43...
Error yelp_review_full Checksums didn't match for dataset source files:
['https://drive.google.com/uc?export=download&id=0Bz8a_Dbh9QhbZlU4dXhHTFhZQU0']
```

## Environment info
- `datasets` version: 1.18.3
- Platform: Linux-5.4.144+-x86_64-with-Ubuntu-18.04-bionic
- Python version: 3.7.12
- PyArrow version: 6.0.1


Comments: Hi @muelletm, thanks for reporting.

This issue was already reported and its root cause is a change in the Google Drive service. See:
- #3786 

We have already fixed it. See:
- #3787 

Until our next `datasets` library release, you can get this fix by installing our library from the GitHub master branch:
```shell
pip install git+https://github.com/huggingface/datasets#egg=datasets
```
Then, if you had previously tried to load the data and got the checksum error, you should force the redownload of the data (before the fix, you just downloaded and cached the virus scan warning page, instead of the data file):
```shell
load_dataset("...", download_mode="force_redownload")
```
Text builder with custom separator line boundaries
State: open | Author: cronoik (NONE)
Labels: name: enhancement

**Is your feature request related to a problem? Please describe.**
The current [Text](https://github.com/huggingface/datasets/blob/207be676bffe9d164740a41a883af6125edef135/src/datasets/packaged_modules/text/text.py#L23) builder implementation splits texts with `splitlines()` which splits the text on several line boundaries. Not all of them are always wanted. 

**Describe the solution you'd like**
```python
                if self.config.sample_by == "line":
                    batch_idx = 0
                    while True:
                        batch = f.read(self.config.chunksize)
                        if not batch:
                            break
                        batch += f.readline()  # finish current line
                        if self.config.custom_newline is None: 
                            batch = batch.splitlines(keepends=self.config.keep_linebreaks)
                        else:
                            batch = batch.split(self.config.custom_newline)[:-1]
                        pa_table = pa.Table.from_arrays([pa.array(batch)], schema=schema)
                        # Uncomment for debugging (will print the Arrow table size and elements)
                        # logger.warning(f"pa_table: {pa_table} num rows: {pa_table.num_rows}")
                        # logger.warning('\n'.join(str(pa_table.slice(i, 1).to_pydict()) for i in range(pa_table.num_rows)))
                        yield (file_idx, batch_idx), pa_table
                        batch_idx += 1
```

**A clear and concise description of what you want to happen.**
Creating the dataset rows with a subset of the `splitlines()` line boundaries.

Comments: Gently pinging @lhoestq

Hi ! Interresting :)

Could you give more details on what kind of separators you would like to use instead ?

In my case, I just want to use `\n` but not `U+2028`.

Ok I see, maybe there can be a `sep` parameter to allow users to specify what line/paragraph separator they'd like to use

Related to:
- #3729 
- #3910

Thanks for requesting this enhancement. We have recently found a somehow related issue with another dataset:
- #3704

Let me make a PR proposal.
Remove deprecated methods/params (preparation for v2.0)
State: closed | Author: mariosasko (COLLABORATOR)

This PR removes the following deprecated methos/params:
* `Dataset.cast_`/`DatasetDict.cast_`
* `Dataset.dictionary_encode_column_`/`DatasetDict.dictionary_encode_column_`
* `Dataset.remove_columns_`/`DatasetDict.remove_columns_`
* `Dataset.rename_columns_`/`DatasetDict.rename_columns_`
* `prepare_module`
* param `script_version` in `load_dataset`/`load_metric`
* param `version` in `hf_github_url`
[Breaking] Align `map` when streaming: update instead of overwrite + add missing parameters
State: closed | Author: lhoestq (MEMBER)

Currently the datasets in streaming mode and in non-streaming mode have two distinct API for `map` processing.

In this PR I'm aligning the two by changing `map` in streamign mode. This includes a **major breaking change** and will require a major release of the library: **Datasets 2.0**

In particular, `Dataset.map` adds new columns (with dict.update) BUT `IterableDataset.map` used to discard previous columns (it overwrites the dict). In this PR I'm chaning the `IterableDataset.map` to behave the same way as `Dataset.map`: it will update the examples instead of overwriting them.

I'm also adding those missing parameters to streaming `map`: with_indices, input_columns, remove_columns

### TODO
- [x] tests
- [x] docs

Related to https://github.com/huggingface/datasets/issues/3444

Comments: Right ! Will add it in another PR :)
Xtreme-S Metrics
State: closed | Author: patrickvonplaten (CONTRIBUTOR)

**Added datasets (TODO)**:

- [x] MLS
- [x] Covost2
- [x] Minds-14
- [x] Voxpopuli
- [x] FLoRes (need data)

**Metrics**: Done

Comments: @lhoestq - if you could take a final review here this would be great (if you have 5min :-) ) 

Don't think the failures are related but not 100% sure

Yes the CI fail is unrelated - you can ignore it
Fix error message in CSV loader for newer Pandas versions
State: closed | Author: mariosasko (COLLABORATOR)

Fix the error message in the CSV loader for `Pandas >= 1.4`. To fix this, I directly print the current file name in the for-loop. An alternative would be to use a check similar to this:
```python
csv_file_reader.handle.handle if datasets.config.PANDAS_VERSION >= version.parse("1.4") else csv_file_reader.f
```
CC: @SBrandeis
can not flatten natural_questions dataset
State: closed | Author: Hannibal046 (NONE)
Labels: name: bug

## Describe the bug
after downloading the natural_questions dataset, can not flatten the dataset considering there are `long answer` and `short answer` in `annotations`.

## Steps to reproduce the bug
```python
from datasets import load_dataset

dataset = load_dataset('natural_questions',cache_dir = 'data/dataset_cache_dir')
dataset['train'].flatten()
```

## Expected results
a dataset with `long_answer` as features

## Actual results
Traceback (most recent call last):
  File "temp.py", line 5, in <module>
    dataset['train'].flatten()
  File "/Users/hannibal046/anaconda3/lib/python3.8/site-packages/datasets/fingerprint.py", line 413, in wrapper
    out = func(self, *args, **kwargs)
  File "/Users/hannibal046/anaconda3/lib/python3.8/site-packages/datasets/arrow_dataset.py", line 1296, in flatten
    dataset._data = update_metadata_with_features(dataset._data, dataset.features)
  File "/Users/hannibal046/anaconda3/lib/python3.8/site-packages/datasets/arrow_dataset.py", line 536, in update_metadata_with_features
    features = Features({col_name: features[col_name] for col_name in table.column_names})
  File "/Users/hannibal046/anaconda3/lib/python3.8/site-packages/datasets/arrow_dataset.py", line 536, in <dictcomp>
    features = Features({col_name: features[col_name] for col_name in table.column_names})
KeyError: 'annotations.long_answer'
## Environment info
<!-- You can run the command `datasets-cli env` and copy-and-paste its output below. -->
- `datasets` version: 1.8.13
- Platform: MBP
- Python version: 3.8
- PyArrow version: 6.0.1


Comments: same issue. downgrade it to a lower version.

Thanks for reporting, I'll take a look tomorrow :)
Add Mahalanobis distance metric
State: closed | Author: JoaoLages (CONTRIBUTOR)

Mahalanobis distance is a very useful metric to measure the distance from one datapoint X to a distribution P. 
In this PR I implement the metric in a simple way with the help of numpy only.

Similar to the [MAUVE implementation](https://github.com/huggingface/datasets/blob/master/metrics/mauve/mauve.py), we can make this metric accept texts as input and encode them with a featurize model, if that is desirable.
Docs new UI actions no self hosted
State: closed | Author: LysandreJik (MEMBER)

Removes the need to have a self-hosted runner for the dev documentation

Comments: It seems like the doc can't be compiled right now because of the following:

```
Traceback (most recent call last):
  File "/usr/local/bin/doc-builder", line 33, in <module>
    sys.exit(load_entry_point('doc-builder', 'console_scripts', 'doc-builder')())
  File "/__w/datasets/datasets/doc-builder/src/doc_builder/commands/doc_builder_cli.py", line 39, in main
    args.func(args)
  File "/__w/datasets/datasets/doc-builder/src/doc_builder/commands/build.py", line 95, in build_command
    build_doc(
  File "/__w/datasets/datasets/doc-builder/src/doc_builder/build_doc.py", line 361, in build_doc
    anchors_mapping = build_mdx_files(package, doc_folder, output_dir, page_info)
  File "/__w/datasets/datasets/doc-builder/src/doc_builder/build_doc.py", line 200, in build_mdx_files
    raise type(e)(f"There was an error when converting {file} to the MDX format.\n" + e.args[0]) from e
TypeError: There was an error when converting datasets/docs/source/package_reference/table_classes.mdx to the MDX format.
expected string or bytes-like object
```

The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_3793). All of your documentation changes will be reflected on that endpoint.

This is due to the injection of docstrings from PyArrow. I think I can fix that by moving all the docstrings and fix them manually.

> It seems like the doc can't be compiled right now because of the following:

it is expected since there is something I need to change on doc-builder side.

> This is due to the injection of docstrings from PyArrow. I think I can fix that by moving all the docstrings and fix them manually.

@lhoestq I will let you know if we need to change it manually.

@LysandreJik thanks a lot for this PR! I only had one question [here](https://github.com/huggingface/datasets/pull/3793#discussion_r816100194)

> @lhoestq I will let you know if we need to change it manually.

It would be simpler to change it manually anyway - I don't want our documentation to break if PyArrow has documentation issues

For some reason it fails when `Installing node dependencies` when running `npm ci` from the `kit` directory, any idea why @mishig25 ?

Checking it rn

It's very likely linked to an OOM error: https://github.com/huggingface/transformers/pull/15710#issuecomment-1051737337
Add `data_dir` to `data_files` resolution and misc improvements to HfFileSystem
State: closed | Author: mariosasko (COLLABORATOR)

As discussed in https://github.com/huggingface/datasets/pull/2830#issuecomment-1048989764, this PR adds a QOL improvement to easily reference the files inside a directory in `load_dataset` using the `data_dir` param (very handy for ImageFolder because it avoids globbing, but also useful for the other loaders). Additionally, it fixes the issue with `HfFileSystem.isdir`, which would previously always return `False`, and aligns the path-handling logic in `HfFileSystem` with `fsspec.GitHubFileSystem`.
Add doc builder scripts
State: closed | Author: lhoestq (MEMBER)

I added the three scripts:
- build_dev_documentation.yml
- build_documentation.yml
- delete_dev_documentation.yml

I got them from `transformers` and did a few changes:
- I removed the `transformers`-specific dependencies
- I changed all the paths to be "datasets" instead of "transformers"
- I passed the `--library_name datasets` arg to the `doc-builder build` command (according to https://github.com/huggingface/doc-builder/pull/94/files#diff-bcc33cf7c223511e498776684a9a433810b527a0a38f483b1487e8a42b6575d3R26)

cc @LysandreJik @mishig25 

Comments: I think we're only missing the hosted runner to be configured for this repository and we should be good

Regarding the self-hosted runner, I actually encourage using the approach defined here: https://github.com/huggingface/transformers/pull/15710, which doesn't leverage a self-hosted runner. This prevents queuing jobs, which is important when we expect several concurrent jobs.

Opened a PR for that on your branch here: https://github.com/huggingface/datasets/pull/3793
Add URL and ID fields to Wikipedia dataset
State: closed | Author: albertvillanova (MEMBER)

This PR adds the URL field, so that we conform to proper attribution, required by their license: provide credit to the authors by including a hyperlink (where possible) or URL to the page or pages you are re-using.

About the conversion from title to URL, I found that apart from replacing blanks with underscores, some other special character must also be percent-encoded (e.g. `"` to `%22`): https://meta.wikimedia.org/wiki/Help:URL

Therefore, I have finally used `urllib.parse.quote` function. This additionally percent-encodes non-ASCII characters, but Wikimedia docs say these are equivalent:
> For the other characters either the code or the character can be used in internal and external links, they are equivalent. The system does a conversion when needed.
> [[%C3%80_propos_de_M%C3%A9ta]]
> is rendered as [À_propos_de_Méta](https://meta.wikimedia.org/wiki/%C3%80_propos_de_M%C3%A9ta), almost like [À propos de Méta](https://meta.wikimedia.org/wiki/%C3%80_propos_de_M%C3%A9ta), which leads to this page on Meta with in the address bar the URL
> [http://meta.wikipedia.org/wiki/%C3%80_propos_de_M%C3%A9ta](https://meta.wikipedia.org/wiki/%C3%80_propos_de_M%C3%A9ta)
> while [http://meta.wikipedia.org/wiki/À_propos_de_Méta](https://meta.wikipedia.org/wiki/%C3%80_propos_de_M%C3%A9ta) leads to the same. 

Fix #3398.
CC: @geohci

Comments: Do you think we have a dedicated branch for all the changes we want to do to wikipedia ? Then once everything looks good + we have preprocessed the main languages, we can merge it on the `master` branch

Yes, @lhoestq, I agree with you.

I have just created the dedicated branch [`update-wikipedia`](https://github.com/huggingface/datasets/tree/update-wikipedia). We can merge every PR (once validated) to that branch; once all changes are merged to that branch, we could create the preprocessed datasets and then merge the branch to master. 

@lhoestq I guess you approve this PR?
Only-data dataset loaded unexpectedly as validation split
State: open | Author: albertvillanova (MEMBER)
Labels: name: bug

## Describe the bug
As reported by @thomasw21 and @lhoestq, a dataset containing only a data file whose name matches the pattern `*dev*` will be returned as VALIDATION split, even if this is not the desired behavior, e.g. a file named `datosdevision.jsonl.gz`.

Comments: I see two options:
1. drop the "dev" keyword since it can be considered too generic
2. improve the pattern to something more reasonable, e.g. asking for a separator before and after "dev"
```python
["*[ ._-]dev[ ._-]*", "dev[ ._-]*"]
```

I think 2. is nice. If we agree on this one we can even decide to require the separation for the other split keywords "train", "test" etc.

Yes, I had something like that on mind: "dev" not being part of a word.
```
"[^a-zA-Z]dev[^a-zA-Z]"

Is there a reason why we want that regex? It feels like something that'll still be an issue for some weird case. "my_dataset_dev" doesn't match your regex, "my_dataset_validation" doesn't either ... Why not always "train" unless specified?

The regex is needed as part of our effort to make datasets configurable without code. In particular we define some generic dataset repository structures that users can follow

> ```
> "[^a-zA-Z]*dev[^a-zA-Z]*"
> ```

unfortunately our glob doesn't support "^": 

https://github.com/fsspec/filesystem_spec/blob/3e739db7e53f5b408319dcc9d11e92bc1f938902/fsspec/spec.py#L465-L479

> "my_dataset_dev" doesn't match your regex, "my_dataset_validation" doesn't either ... Why not always "train" unless specified?

And `my_dataset_dev.foo` would match the pattern, and we also have the same pattern but for the "validation" keyword so `my_dataset_validation.foo` would work too

> The regex is needed as part of our effort to make datasets configurable without code

This feels like coding with the filename ^^'

This is still much easier than having to write a full dataset script right ? :p
Fix Google Drive URL to avoid Virus scan warning
State: closed | Author: albertvillanova (MEMBER)

This PR fixes, in the datasets library instead of in every specific dataset, the issue of downloading the Virus scan warning page instead of the actual data file for Google Drive URLs.

Fix #3786, fix #3784.

Comments: Thanks for this @albertvillanova!

Once this PR merged into master and until our next `datasets` library release, you can get this fix by installing our library from the GitHub master branch:
```shell
pip install git+https://github.com/huggingface/datasets#egg=datasets
```
Then, if you had previously tried to load the data and got the checksum error, you should force the redownload of the data (before the fix, you just downloaded and cached the virus scan warning page, instead of the data file):
```shell
load_dataset("...", download_mode="force_redownload")
```

Thanks, that solved a bunch of problems we had downstream!
cf. https://github.com/ElementAI/picard/issues/61
Bug downloading Virus scan warning page from Google Drive URLs
State: closed | Author: albertvillanova (MEMBER)
Labels: name: bug

## Describe the bug
Recently, some issues were reported with URLs from Google Drive, where we were downloading the Virus scan warning page instead of the data file itself.

See:
- #3758 
- #3773
- #3784


Comments: Once the PR merged into master and until our next `datasets` library release, you can get this fix by installing our library from the GitHub master branch:
```shell
pip install git+https://github.com/huggingface/datasets#egg=datasets
```
Then, if you had previously tried to load the data and got the checksum error, you should force the redownload of the data (before the fix, you just downloaded and cached the virus scan warning page, instead of the data file):
```shell
load_dataset("...", download_mode="force_redownload")
```
Fix: Bypass Virus Checks in Google Drive Links (CNN-DM dataset)
State: closed | Author: AngadSethi (NONE)

This commit fixes the issue described in #3784. By adding an extra parameter to the end of Google Drive links, we are able to bypass the virus check and download the datasets.

So, if the original link looked like https://drive.google.com/uc?export=download&id=0BwmD_VLjROrfTHk4NFg2SndKcjQ

The new link now looks like https://drive.google.com/uc?export=download&id=0BwmD_VLjROrfTHk4NFg2SndKcjQ&confirm=t

Fixes #3784

Comments: Thank you, @albertvillanova!

Got it. Thanks for explaining this, @albertvillanova!

> On the other hand, the tests are not passing because the dummy data should also be fixed. Once done, this PR will be able to be merged into master.

Will do this 👍

Hi ! I think we need to fix the issue for every dataset. This can be done simply by fixing how we handle Google Drive links, see my comment https://github.com/huggingface/datasets/pull/3775#issuecomment-1050970157

Hi @lhoestq! I think @albertvillanova has already fixed this in #3787

Cool ! I missed this one :) thanks

No problem!

Hi, @AngadSethi, I think that once:
- #3787 

was merged, issue:
- #3784 

was also fixed.

Therefore, I think this PR is no longer necessary. I'm closing it. Let me know if you agree.

Yes, absolutely @albertvillanova! I agree :)
Unable to Download CNN-Dailymail Dataset 
State: closed | Author: AngadSethi (NONE)
Labels: name: bug

## Describe the bug
I am unable to download the CNN-Dailymail dataset. Upon closer investigation, I realised why this was happening:
- The dataset sits in Google Drive, and both the CNN and DM datasets are large.
- Google is unable to scan the folder for viruses, **so the link which would originally download the dataset, now downloads the source code of this web page:**
![image](https://user-images.githubusercontent.com/58678541/155658435-c2f497d7-7601-4332-94b1-18a62dd96422.png)
- **This leads to the following error**:
```python
NotADirectoryError: [Errno 20] Not a directory: '/root/.cache/huggingface/datasets/downloads/1bc05d24fa6dda2468e83a73cf6dc207226e01e3c48a507ea716dc0421da583b/cnn/stories'
```


## Steps to reproduce the bug
```python
import datasets
dataset = datasets.load_dataset("cnn_dailymail", "3.0.0", split="train")
```

## Expected results
That the dataset is downloaded and processed just like other datasets.

## Actual results
Hit with this error:
```python
NotADirectoryError: [Errno 20] Not a directory: '/root/.cache/huggingface/datasets/downloads/1bc05d24fa6dda2468e83a73cf6dc207226e01e3c48a507ea716dc0421da583b/cnn/stories'
```

## Environment info
<!-- You can run the command `datasets-cli env` and copy-and-paste its output below. -->
- `datasets` version: 1.18.3
- Platform: Linux-5.4.144+-x86_64-with-Ubuntu-18.04-bionic
- Python version: 3.7.12
- PyArrow version: 6.0.1


Comments: #self-assign

@AngadSethi thanks for reporting and thanks for your PR!

Glad to help @albertvillanova! Just fine-tuning the PR, will comment once I am able to get it up and running 😀

Fixed by:
- #3787