# Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # TODO: Address all TODOs and remove all explanatory comments """TODO: Add a description here.""" import pandas as pd import numpy as np from pathlib import Path import jsonlines from connect_later.split_dataset_into_files import split_dataset_into_files import torch import pdb import datasets DATASET_PATH = "/pscratch/sd/h/helenqu/plasticc/raw/plasticc_raw_examples" # TODO: Add BibTeX citation # Find for instance the citation on arxiv or on the dataset repo/website _CITATION = """\ @InProceedings{huggingface:dataset, title = {A great new dataset}, author={huggingface, Inc. }, year={2020} } """ # TODO: Add description of the dataset here # You can copy an official description _DESCRIPTION = """\ This new dataset is designed to solve this great NLP task and is crafted with a lot of care. """ # TODO: Name of the dataset usually matches the script name with CamelCase instead of snake_case class NewDataset(datasets.GeneratorBasedBuilder): """TODO: Short description of my dataset.""" VERSION = datasets.Version("1.1.0") def _info(self): # TODO: This method specifies the datasets.DatasetInfo object which contains informations and typings for the dataset # if self.config.name == "first_domain": # This is the name of the configuration selected in BUILDER_CONFIGS above features = datasets.Features( { "objid": datasets.Value("int32"), "times_wv": datasets.Array2D(shape=(300, 2), dtype='float64'), # ith row is [time, central wv of band] "target": datasets.Array2D(shape=(300, 2), dtype='float64'), # the time series data, ith row is [flux, flux_err] } ) return datasets.DatasetInfo( # This is the description that will appear on the datasets page. description=_DESCRIPTION, # This defines the different columns of the dataset and their types features=features, # Here we define them above because they are different between the two configurations ) def _split_generators(self, dl_manager): # TODO: This method is tasked with downloading/extracting the data and defining the splits depending on the configuration # If several configurations are possible (listed in BUILDER_CONFIGS), the configuration selected by the user is in self.config.name # dl_manager is a datasets.download.DownloadManager that can be used to download and extract URLS # It can accept any type or nested list/dict and will give back the same structure with the url replaced with path to local files. # By default the archives will be extracted and a path to a cached folder where they are extracted is returned instead of the archive dataset_path = Path(DATASET_PATH) # if not (dataset_path / 'train.csv').exists(): # print('Splitting dataset into files...') # split_dataset_into_files(dataset_path, "prepr*csv", 0.8, fraction=0.15, required_paths=[dataset_path / "orig_train_set.csv"]) # full dataset size is 256G, trying to keep it under 40G for now since that's the size of the GPU mem return [ datasets.SplitGenerator( name=datasets.Split.TRAIN, # These kwargs will be passed to _generate_examples gen_kwargs={ "filepath": self.config.data_files['train'] if self.config.data_files is not None else dataset_path.glob('*.jsonl'), "split": "train", }, ), ] # method parameters are unpacked from `gen_kwargs` as given in `_split_generators` def _generate_examples(self, filepath, split): # TODO: This method handles input defined in _split_generators to yield (key, example) tuples from the dataset. # The `key` is for legacy reasons (tfds) and is not important in itself, but must be unique for each example. for path in filepath: with jsonlines.open(path) as reader: for obj in reader: yield int(obj['object_id']), { "objid": int(obj['object_id']), "times_wv": obj['times_wv'], # "target": np.transpose(np.array(obj['lightcurve'], dtype='float64')), "target": obj['lightcurve'], }