gurudesh/pytracebugs huggingface dataset:
# Buggy code
def setup_entity(self, ext_info, aliased_adapter):
    if "selectable" not in self.__dict__:
        self.selectable = ext_info.selectable

    if self.actual_froms.intersection(ext_info.selectable._from_objects):
        self.froms.add(ext_info.selectable)


# Traceback (sqlalchemy.exc.InvalidRequestError)
Traceback (most recent call last):
File "/home/mahenzon/.PyCharm2019.2/config/scratches/scratch_32.py", line 283, in <module>
main()
File "/home/mahenzon/.PyCharm2019.2/config/scratches/scratch_32.py", line 279, in main
run_cte_query()
File "/home/mahenzon/.PyCharm2019.2/config/scratches/scratch_32.py", line 269, in run_cte_query
query = create_cte_query()
File "/home/mahenzon/.PyCharm2019.2/config/scratches/scratch_32.py", line 258, in create_cte_query
full=True,
File "/home/mahenzon/.local/share/virtualenvs/core-C3GrfXXb/src/sqlalchemy/lib/sqlalchemy/orm/query.py", line 2246, in join
from_joinpoint=from_joinpoint,
File "<string>", line 2, in _join
File "/home/mahenzon/.local/share/virtualenvs/core-C3GrfXXb/src/sqlalchemy/lib/sqlalchemy/orm/base.py", line 220, in generate
fn(self, *args[1:], **kw)
File "/home/mahenzon/.local/share/virtualenvs/core-C3GrfXXb/src/sqlalchemy/lib/sqlalchemy/orm/query.py", line 2425, in _join
left, right, onclause, prop, create_aliases, outerjoin, full
File "/home/mahenzon/.local/share/virtualenvs/core-C3GrfXXb/src/sqlalchemy/lib/sqlalchemy/orm/query.py", line 2448, in _join_left_to_right
) = self._join_determine_implicit_left_side(left, right, onclause)
File "/home/mahenzon/.local/share/virtualenvs/core-C3GrfXXb/src/sqlalchemy/lib/sqlalchemy/orm/query.py", line 2590, in _join_determine_implicit_left_side
"side of this join" % (right,)
sqlalchemy.exc.InvalidRequestError: Don't know how to join to ; please use an ON clause to more clearly establish the left side of this join

# Fixed code
def setup_entity(self, ext_info, aliased_adapter):
    if "selectable" not in self.__dict__:
        self.selectable = ext_info.selectable

    if set(self.actual_froms).intersection(ext_info.selectable._from_objects):
        self.froms.add(ext_info.selectable)
# Buggy code
def _setup_crud_params(compiler, stmt, local_stmt_type, **kw):
    restore_isinsert = compiler.isinsert
    restore_isupdate = compiler.isupdate
    restore_isdelete = compiler.isdelete

    should_restore = (restore_isinsert or restore_isupdate or restore_isdelete) or len(
        compiler.stack
    ) > 1

    if local_stmt_type is ISINSERT:
        compiler.isupdate = False
        compiler.isinsert = True
    elif local_stmt_type is ISUPDATE:
        compiler.isupdate = True
        compiler.isinsert = False
    elif local_stmt_type is ISDELETE:
        if not should_restore:
            compiler.isdelete = True
    else:
        assert False, "ISINSERT, ISUPDATE, or ISDELETE expected"

    try:
        if local_stmt_type in (ISINSERT, ISUPDATE):
            return _get_crud_params(compiler, stmt, **kw)
    finally:
        if should_restore:
            compiler.isinsert = restore_isinsert
            compiler.isupdate = restore_isupdate
            compiler.isdelete = restore_isdelete


# Traceback (AttributeError)
python ref_cte.py
Traceback (most recent call last):
File "ref_cte.py", line 28, in <module>
test_pg_example_one()
File "ref_cte.py", line 23, in test_pg_example_one
c = stmt.compile(dialect=dialect)
File "<string>", line 1, in <lambda>
File "/Users/xtof/Documents/Dev/Python/bug-sa/venv/lib/python3.7/site-packages/sqlalchemy/sql/elements.py", line 468, in compile
return self._compiler(dialect, bind=bind, **kw)
File "/Users/xtof/Documents/Dev/Python/bug-sa/venv/lib/python3.7/site-packages/sqlalchemy/sql/elements.py", line 474, in _compiler
return dialect.statement_compiler(dialect, self, **kw)
File "/Users/xtof/Documents/Dev/Python/bug-sa/venv/lib/python3.7/site-packages/sqlalchemy/sql/compiler.py", line 593, in __init__
) and statement._returning:
AttributeError: 'Select' object has no attribute '_returning'

# Fixed code
def _setup_crud_params(compiler, stmt, local_stmt_type, **kw):
    restore_isinsert = compiler.isinsert
    restore_isupdate = compiler.isupdate
    restore_isdelete = compiler.isdelete

    should_restore = (
        (restore_isinsert or restore_isupdate or restore_isdelete)
        or len(compiler.stack) > 1
        or "visiting_cte" in kw
    )

    if local_stmt_type is ISINSERT:
        compiler.isupdate = False
        compiler.isinsert = True
    elif local_stmt_type is ISUPDATE:
        compiler.isupdate = True
        compiler.isinsert = False
    elif local_stmt_type is ISDELETE:
        if not should_restore:
            compiler.isdelete = True
    else:
        assert False, "ISINSERT, ISUPDATE, or ISDELETE expected"

    try:
        if local_stmt_type in (ISINSERT, ISUPDATE):
            return _get_crud_params(compiler, stmt, **kw)
    finally:
        if should_restore:
            compiler.isinsert = restore_isinsert
            compiler.isupdate = restore_isupdate
            compiler.isdelete = restore_isdelete
# Buggy code
def exec_once(self, *args, **kw):
    """Execute this event, but only if it has not been
    executed already for this collection."""

    if not self._exec_once:
        with self._exec_once_mutex:
            if not self._exec_once:
                try:
                    self(*args, **kw)
                finally:
                    self._exec_once = True


# Traceback (TypeError)
Traceback (most recent call last):
File "sandbox.py", line 54, in <module>
print(engine.execute(product.select().where(product.c.id == 709765476)).fetchall())
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/engine/result.py", line 170, in __repr__
return repr(sql_util._repr_row(self))
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/util.py", line 458, in __repr__
", ".join(trunc(value) for value in self.row),
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/sqltypes.py", line 2278, in process
return json_deserializer(value)
File "/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/__init__.py", line 341, in loads
raise TypeError(f'the JSON object must be str, bytes or bytearray, '
TypeError: the JSON object must be str, bytes or bytearray, not dict

# Fixed code
def exec_once(self, *args, **kw):
    """Execute this event, but only if it has not been
    executed already for this collection."""

    if not self._exec_once:
        self._exec_once_impl(False, *args, **kw)
# Buggy code
def listen(self, *args, **kw):
    once = kw.pop("once", False)
    named = kw.pop("named", False)

    target, identifier, fn = (
        self.dispatch_target,
        self.identifier,
        self._listen_fn,
    )

    dispatch_collection = getattr(target.dispatch, identifier)

    adjusted_fn = dispatch_collection._adjust_fn_spec(fn, named)

    self = self.with_wrapper(adjusted_fn)

    stub_function = getattr(self.dispatch_target.dispatch._events, self.identifier)
    if hasattr(stub_function, "_sa_warn"):
        stub_function._sa_warn()

    if once:
        self.with_wrapper(util.only_once(self._listen_fn)).listen(*args, **kw)
    else:
        self.dispatch_target.dispatch._listen(self, *args, **kw)


# Traceback (TypeError)
Traceback (most recent call last):
File "sandbox.py", line 54, in <module>
print(engine.execute(product.select().where(product.c.id == 709765476)).fetchall())
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/engine/result.py", line 170, in __repr__
return repr(sql_util._repr_row(self))
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/util.py", line 458, in __repr__
", ".join(trunc(value) for value in self.row),
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/sqltypes.py", line 2278, in process
return json_deserializer(value)
File "/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/__init__.py", line 341, in loads
raise TypeError(f'the JSON object must be str, bytes or bytearray, '
TypeError: the JSON object must be str, bytes or bytearray, not dict

# Fixed code
def listen(self, *args, **kw):
    once = kw.pop("once", False)
    once_unless_exception = kw.pop("_once_unless_exception", False)
    named = kw.pop("named", False)

    target, identifier, fn = (
        self.dispatch_target,
        self.identifier,
        self._listen_fn,
    )

    dispatch_collection = getattr(target.dispatch, identifier)

    adjusted_fn = dispatch_collection._adjust_fn_spec(fn, named)

    self = self.with_wrapper(adjusted_fn)

    stub_function = getattr(self.dispatch_target.dispatch._events, self.identifier)
    if hasattr(stub_function, "_sa_warn"):
        stub_function._sa_warn()

    if once or once_unless_exception:
        self.with_wrapper(
            util.only_once(self._listen_fn, retry_on_exception=once_unless_exception)
        ).listen(*args, **kw)
    else:
        self.dispatch_target.dispatch._listen(self, *args, **kw)
# Buggy code
def __connect(self, first_connect_check=False):
    pool = self.__pool

    # ensure any existing connection is removed, so that if
    # creator fails, this attribute stays None
    self.connection = None
    try:
        self.starttime = time.time()
        connection = pool._invoke_creator(self)
        pool.logger.debug("Created new connection %r", connection)
        self.connection = connection
    except Exception as e:
        pool.logger.debug("Error on connect(): %s", e)
        raise
    else:
        if first_connect_check:
            pool.dispatch.first_connect.for_modify(pool.dispatch).exec_once(
                self.connection, self
            )
        if pool.dispatch.connect:
            pool.dispatch.connect(self.connection, self)


# Traceback (TypeError)
Traceback (most recent call last):
File "sandbox.py", line 54, in <module>
print(engine.execute(product.select().where(product.c.id == 709765476)).fetchall())
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/engine/result.py", line 170, in __repr__
return repr(sql_util._repr_row(self))
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/util.py", line 458, in __repr__
", ".join(trunc(value) for value in self.row),
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/sqltypes.py", line 2278, in process
return json_deserializer(value)
File "/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/__init__.py", line 341, in loads
raise TypeError(f'the JSON object must be str, bytes or bytearray, '
TypeError: the JSON object must be str, bytes or bytearray, not dict

# Fixed code
def __connect(self, first_connect_check=False):
    pool = self.__pool

    # ensure any existing connection is removed, so that if
    # creator fails, this attribute stays None
    self.connection = None
    try:
        self.starttime = time.time()
        connection = pool._invoke_creator(self)
        pool.logger.debug("Created new connection %r", connection)
        self.connection = connection
    except Exception as e:
        pool.logger.debug("Error on connect(): %s", e)
        raise
    else:
        if first_connect_check:
            pool.dispatch.first_connect.for_modify(
                pool.dispatch
            ).exec_once_unless_exception(self.connection, self)
        if pool.dispatch.connect:
            pool.dispatch.connect(self.connection, self)
# Buggy code
def only_once(fn):
    """Decorate the given function to be a no-op after it is called exactly
    once."""

    once = [fn]

    def go(*arg, **kw):
        # strong reference fn so that it isn't garbage collected,
        # which interferes with the event system's expectations
        strong_fn = fn  # noqa
        if once:
            once_fn = once.pop()
            return once_fn(*arg, **kw)

    return go


# Traceback (TypeError)
Traceback (most recent call last):
File "sandbox.py", line 54, in <module>
print(engine.execute(product.select().where(product.c.id == 709765476)).fetchall())
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/engine/result.py", line 170, in __repr__
return repr(sql_util._repr_row(self))
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/util.py", line 458, in __repr__
", ".join(trunc(value) for value in self.row),
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/sqltypes.py", line 2278, in process
return json_deserializer(value)
File "/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/__init__.py", line 341, in loads
raise TypeError(f'the JSON object must be str, bytes or bytearray, '
TypeError: the JSON object must be str, bytes or bytearray, not dict

# Fixed code
def only_once(fn, retry_on_exception):
    """Decorate the given function to be a no-op after it is called exactly
    once."""

    once = [fn]

    def go(*arg, **kw):
        # strong reference fn so that it isn't garbage collected,
        # which interferes with the event system's expectations
        strong_fn = fn  # noqa
        if once:
            once_fn = once.pop()
            try:
                return once_fn(*arg, **kw)
            except:
                if retry_on_exception:
                    once.insert(0, once_fn)
                raise

    return go
# Buggy code
def go(*arg, **kw):
    # strong reference fn so that it isn't garbage collected,
    # which interferes with the event system's expectations
    strong_fn = fn  # noqa
    if once:
        once_fn = once.pop()
        return once_fn(*arg, **kw)


# Traceback (TypeError)
Traceback (most recent call last):
File "sandbox.py", line 54, in <module>
print(engine.execute(product.select().where(product.c.id == 709765476)).fetchall())
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/engine/result.py", line 170, in __repr__
return repr(sql_util._repr_row(self))
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/util.py", line 458, in __repr__
", ".join(trunc(value) for value in self.row),
File "/Users/vm/ws/app/env/lib/python3.7/site-packages/sqlalchemy/sql/sqltypes.py", line 2278, in process
return json_deserializer(value)
File "/usr/local/Cellar/python/3.7.2_2/Frameworks/Python.framework/Versions/3.7/lib/python3.7/json/__init__.py", line 341, in loads
raise TypeError(f'the JSON object must be str, bytes or bytearray, '
TypeError: the JSON object must be str, bytes or bytearray, not dict

# Fixed code
def go(*arg, **kw):
    # strong reference fn so that it isn't garbage collected,
    # which interferes with the event system's expectations
    strong_fn = fn  # noqa
    if once:
        once_fn = once.pop()
        try:
            return once_fn(*arg, **kw)
        except:
            if retry_on_exception:
                once.insert(0, once_fn)
            raise
# Buggy code
def __getattr__(self, attribute):
    """Delegate __getattr__ to the original descriptor and/or
    comparator."""

    try:
        return getattr(descriptor, attribute)
    except AttributeError:
        try:
            return getattr(self.comparator, attribute)
        except AttributeError:
            raise AttributeError(
                "Neither %r object nor %r object associated with %s "
                "has an attribute %r"
                % (
                    type(descriptor).__name__,
                    type(self.comparator).__name__,
                    self,
                    attribute,
                )
            )


# Traceback (RuntimeError)
from depth import Child
Child.parent.__name__
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File ".../site-packages/sqlalchemy/orm/attributes.py", line 306, in __getattr__
return getattr(self.comparator, attribute)
File ".../site-packages/sqlalchemy/orm/attributes.py", line 306, in __getattr__
return getattr(self.comparator, attribute)
...
File ".../site-packages/sqlalchemy/util/langhelpers.py", line 853, in __getattr__
return self._fallback_getattr(key)
File ".../site-packages/sqlalchemy/util/langhelpers.py", line 831, in _fallback_getattr
raise AttributeError(key)
RuntimeError: maximum recursion depth exceeded while calling a Python object

# Fixed code
def __getattr__(self, attribute):
    """Delegate __getattr__ to the original descriptor and/or
    comparator."""
    try:
        return getattr(descriptor, attribute)
    except AttributeError:
        if attribute == "comparator":
            raise AttributeError("comparator")
        try:
            # comparator itself might be unreachable
            comparator = self.comparator
        except AttributeError:
            raise AttributeError(
                "Neither %r object nor unconfigured comparator "
                "object associated with %s has an attribute %r"
                % (type(descriptor).__name__, self, attribute)
            )
        else:
            try:
                return getattr(comparator, attribute)
            except AttributeError:
                raise AttributeError(
                    "Neither %r object nor %r object "
                    "associated with %s has an attribute %r"
                    % (
                        type(descriptor).__name__,
                        type(comparator).__name__,
                        self,
                        attribute,
                    )
                )
# Buggy code
def should_evaluate_none(self):
    return not self.none_as_null


# Traceback (AttributeError)
AttributeError                            Traceback (most recent call last)
/src/local_dev/shell_context.pyc in <module>()
----> 1 test_col.type = test_col.type.evaluates_none()

/home/.venv/local/lib/python2.7/site-packages/sqlalchemy/sql/type_api.pyc in evaluates_none(self)
204         """
205         typ = self.copy()
--> 206         typ.should_evaluate_none = True
207         return typ
208

AttributeError: can't set attribute

# Fixed code
def should_evaluate_none(self, value):
    self.none_as_null = not value
# Buggy code
def parse(root, describe_command=DEFAULT_DESCRIBE):
    wd = GitWorkdir(root)

    rev_node = wd.node()
    dirty = wd.is_dirty()

    if rev_node is None:
        return meta("0.0", distance=0, dirty=dirty)

    out, err, ret = do_ex(describe_command, root)
    if ret:
        return meta(
            "0.0",
            distance=wd.count_all_nodes(),
            node=rev_node,
            dirty=dirty,
        )

    tag, number, node = out.rsplit("-", 2)
    number = int(number)
    if number:
        return meta(tag, distance=number, node=node, dirty=dirty)
    else:
        return meta(tag, node=node, dirty=dirty)


# Traceback (FileNotFoundError)
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-qg_odikh-build/setup.py", line 234, in <module>
zip_safe=False)
File "/usr/lib/python3.5/distutils/core.py", line 108, in setup
_setup_distribution = dist = klass(attrs)
File "/appenv/lib/python3.5/site-packages/setuptools/dist.py", line 272, in __init__
_Distribution.__init__(self,attrs)
File "/usr/lib/python3.5/distutils/dist.py", line 281, in __init__
self.finalize_options()
File "/appenv/lib/python3.5/site-packages/setuptools/dist.py", line 327, in finalize_options
ep.load()(self, ep.name, value)
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/integration.py", line 19, in version_keyword
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/__init__.py", line 102, in get_version
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/__init__.py", line 69, in _do_parse
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/__init__.py", line 30, in version_from_scm
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/__init__.py", line 36, in _version_from_entrypoint
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/git.py", line 11, in parse
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/utils.py", line 58, in do_ex
File "/usr/lib/python3.5/subprocess.py", line 947, in __init__
restore_signals, start_new_session)
File "/usr/lib/python3.5/subprocess.py", line 1541, in _execute_child
raise child_exception_type(errno_num, err_msg)
FileNotFoundError: [Errno 2] No such file or directory: 'git'

# Fixed code
def parse(root, describe_command=DEFAULT_DESCRIBE):
    if not has_command("git"):
        return
    wd = GitWorkdir(root)

    rev_node = wd.node()
    dirty = wd.is_dirty()

    if rev_node is None:
        return meta("0.0", distance=0, dirty=dirty)

    out, err, ret = do_ex(describe_command, root)
    if ret:
        return meta(
            "0.0",
            distance=wd.count_all_nodes(),
            node=rev_node,
            dirty=dirty,
        )

    tag, number, node = out.rsplit("-", 2)
    number = int(number)
    if number:
        return meta(tag, distance=number, node=node, dirty=dirty)
    else:
        return meta(tag, node=node, dirty=dirty)
# Buggy code
def do_ex(cmd, cwd="."):
    trace("cmd", repr(cmd))
    if not isinstance(cmd, (list, tuple)):
        cmd = shlex.split(cmd)

    p = subprocess.Popen(
        cmd,
        stdout=subprocess.PIPE,
        stderr=subprocess.PIPE,
        cwd=str(cwd),
        env=_always_strings(
            dict(
                os.environ,
                # try to disable i18n
                LC_ALL="C",
                LANGUAGE="",
                HGPLAIN="1",
            )
        ),
    )

    out, err = p.communicate()
    if out:
        trace("out", repr(out))
    if err:
        trace("err", repr(err))
    if p.returncode:
        trace("ret", p.returncode)
    return ensure_stripped_str(out), ensure_stripped_str(err), p.returncode


# Traceback (FileNotFoundError)
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-qg_odikh-build/setup.py", line 234, in <module>
zip_safe=False)
File "/usr/lib/python3.5/distutils/core.py", line 108, in setup
_setup_distribution = dist = klass(attrs)
File "/appenv/lib/python3.5/site-packages/setuptools/dist.py", line 272, in __init__
_Distribution.__init__(self,attrs)
File "/usr/lib/python3.5/distutils/dist.py", line 281, in __init__
self.finalize_options()
File "/appenv/lib/python3.5/site-packages/setuptools/dist.py", line 327, in finalize_options
ep.load()(self, ep.name, value)
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/integration.py", line 19, in version_keyword
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/__init__.py", line 102, in get_version
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/__init__.py", line 69, in _do_parse
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/__init__.py", line 30, in version_from_scm
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/__init__.py", line 36, in _version_from_entrypoint
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/git.py", line 11, in parse
File "/tmp/pip-qg_odikh-build/.eggs/setuptools_scm-1.10.1-py3.5.egg/setuptools_scm/utils.py", line 58, in do_ex
File "/usr/lib/python3.5/subprocess.py", line 947, in __init__
restore_signals, start_new_session)
File "/usr/lib/python3.5/subprocess.py", line 1541, in _execute_child
raise child_exception_type(errno_num, err_msg)
FileNotFoundError: [Errno 2] No such file or directory: 'git'

# Fixed code
def do_ex(cmd, cwd="."):
    trace("cmd", repr(cmd))
    if not isinstance(cmd, (list, tuple)):
        cmd = shlex.split(cmd)

    p = _popen_pipes(cmd, cwd)
    out, err = p.communicate()
    if out:
        trace("out", repr(out))
    if err:
        trace("err", repr(err))
    if p.returncode:
        trace("ret", p.returncode)
    return ensure_stripped_str(out), ensure_stripped_str(err), p.returncode
# Buggy code
def slot_custom_context_menu_requested(self, pos):
    """slot connected to custom context menu request

    displays custom context menu to user containing action relevant to the item selected

    @param pos: cursor position
    """
    model_index = self.indexAt(pos)
    item = self.map_index_to_source_item(model_index)

    column = model_index.column()
    menu = None

    if CapaExplorerDataModel.COLUMN_INDEX_RULE_INFORMATION == column and isinstance(
        item, CapaExplorerFunctionItem
    ):
        # user hovered function item
        menu = self.load_function_item_context_menu(pos, item, model_index)
    else:
        # user hovered default item
        menu = self.load_default_context_menu(pos, item, model_index)

    # show custom context menu at view position
    self.show_custom_context_menu(menu, pos)


# Traceback (ValueError)
Traceback (most recent call last):
File "c:\users\steve\source\repos\capa\capa\ida\plugin\view.py", line 257, in slot_custom_context_menu_requested
item = self.map_index_to_source_item(model_index)
File "c:\users\steve\source\repos\capa\capa\ida\plugin\view.py", line 104, in map_index_to_source_item
raise ValueError("invalid index")
ValueError: invalid index

# Fixed code
def slot_custom_context_menu_requested(self, pos):
    """slot connected to custom context menu request

    displays custom context menu to user containing action relevant to the item selected

    @param pos: cursor position
    """
    model_index = self.indexAt(pos)

    if not model_index.isValid():
        return

    item = self.map_index_to_source_item(model_index)

    column = model_index.column()
    menu = None

    if CapaExplorerDataModel.COLUMN_INDEX_RULE_INFORMATION == column and isinstance(
        item, CapaExplorerFunctionItem
    ):
        # user hovered function item
        menu = self.load_function_item_context_menu(pos, item, model_index)
    else:
        # user hovered default item
        menu = self.load_default_context_menu(pos, item, model_index)

    # show custom context menu at view position
    self.show_custom_context_menu(menu, pos)
# Buggy code
def get_shellcode_vw(sample, arch="auto"):
    """
    Return shellcode workspace using explicit arch or via auto detect
    """
    import viv_utils

    with open(sample, "rb") as f:
        sample_bytes = f.read()
    if arch == "auto":
        # choose arch with most functions, idea by Jay G.
        vw_cands = []
        for arch in ["i386", "amd64"]:
            vw_cands.append(
                viv_utils.getShellcodeWorkspace(sample_bytes, arch, base=SHELLCODE_BASE)
            )
        if not vw_cands:
            raise ValueError("could not generate vivisect workspace")
        vw = max(vw_cands, key=lambda vw: len(vw.getFunctions()))
    else:
        vw = viv_utils.getShellcodeWorkspace(sample_bytes, arch, base=SHELLCODE_BASE)
    return vw


# Traceback (IOError)
C:\tools\capa>capa-v1.0.0-win.exe -r capa-rules-master c:\windows\notepad.exe
WARNING:capa:skipping non-.yml file: LICENSE.txt
Unwind Info Version: 2 (bailing on .pdata)
Traceback (most recent call last):
File "capa\main.py", line 646, in <module>
File "capa\main.py", line 532, in main
File "capa\main.py", line 286, in get_extractor
File "capa\main.py", line 266, in get_extractor_py2
File "capa\main.py", line 252, in get_workspace
File "site-packages\viv_utils\__init__.py", line 86, in getWorkspace
File "site-packages\vivisect\__init__.py", line 2345, in saveWorkspace
File "site-packages\vivisect\storage\basicfile.py", line 15, in saveWorkspace
File "site-packages\vivisect\storage\basicfile.py", line 24, in vivEventsToFile
IOError: [Errno 13] Permission denied: 'c:\\windows\\notepad.exe.viv'
[2616] Failed to execute script main

# Fixed code
def get_shellcode_vw(sample, arch="auto", should_save=True):
    """
    Return shellcode workspace using explicit arch or via auto detect
    """
    import viv_utils

    with open(sample, "rb") as f:
        sample_bytes = f.read()
    if arch == "auto":
        # choose arch with most functions, idea by Jay G.
        vw_cands = []
        for arch in ["i386", "amd64"]:
            vw_cands.append(
                viv_utils.getShellcodeWorkspace(
                    sample_bytes, arch, base=SHELLCODE_BASE, should_save=should_save
                )
            )
        if not vw_cands:
            raise ValueError("could not generate vivisect workspace")
        vw = max(vw_cands, key=lambda vw: len(vw.getFunctions()))
    else:
        vw = viv_utils.getShellcodeWorkspace(
            sample_bytes, arch, base=SHELLCODE_BASE, should_save=should_save
        )

    vw.setMeta("StorageName", "%s.viv" % sample)

    return vw
# Buggy code
def get_workspace(path, format):
    import viv_utils

    logger.debug("generating vivisect workspace for: %s", path)
    if format == "auto":
        if not is_supported_file_type(path):
            raise UnsupportedFormatError()
        vw = viv_utils.getWorkspace(path)
    elif format == "pe":
        vw = viv_utils.getWorkspace(path)
    elif format == "sc32":
        vw = get_shellcode_vw(path, arch="i386")
    elif format == "sc64":
        vw = get_shellcode_vw(path, arch="amd64")
    logger.debug("%s", get_meta_str(vw))
    return vw


# Traceback (IOError)
C:\tools\capa>capa-v1.0.0-win.exe -r capa-rules-master c:\windows\notepad.exe
WARNING:capa:skipping non-.yml file: LICENSE.txt
Unwind Info Version: 2 (bailing on .pdata)
Traceback (most recent call last):
File "capa\main.py", line 646, in <module>
File "capa\main.py", line 532, in main
File "capa\main.py", line 286, in get_extractor
File "capa\main.py", line 266, in get_extractor_py2
File "capa\main.py", line 252, in get_workspace
File "site-packages\viv_utils\__init__.py", line 86, in getWorkspace
File "site-packages\vivisect\__init__.py", line 2345, in saveWorkspace
File "site-packages\vivisect\storage\basicfile.py", line 15, in saveWorkspace
File "site-packages\vivisect\storage\basicfile.py", line 24, in vivEventsToFile
IOError: [Errno 13] Permission denied: 'c:\\windows\\notepad.exe.viv'
[2616] Failed to execute script main

# Fixed code
def get_workspace(path, format, should_save=True):
    import viv_utils

    logger.debug("generating vivisect workspace for: %s", path)
    if format == "auto":
        if not is_supported_file_type(path):
            raise UnsupportedFormatError()
        vw = viv_utils.getWorkspace(path, should_save=should_save)
    elif format == "pe":
        vw = viv_utils.getWorkspace(path, should_save=should_save)
    elif format == "sc32":
        vw = get_shellcode_vw(path, arch="i386", should_save=should_save)
    elif format == "sc64":
        vw = get_shellcode_vw(path, arch="amd64", should_save=should_save)
    logger.debug("%s", get_meta_str(vw))
    return vw
# Buggy code
def get_extractor_py2(path, format):
    import capa.features.extractors.viv

    vw = get_workspace(path, format)
    return capa.features.extractors.viv.VivisectFeatureExtractor(vw, path)


# Traceback (IOError)
C:\tools\capa>capa-v1.0.0-win.exe -r capa-rules-master c:\windows\notepad.exe
WARNING:capa:skipping non-.yml file: LICENSE.txt
Unwind Info Version: 2 (bailing on .pdata)
Traceback (most recent call last):
File "capa\main.py", line 646, in <module>
File "capa\main.py", line 532, in main
File "capa\main.py", line 286, in get_extractor
File "capa\main.py", line 266, in get_extractor_py2
File "capa\main.py", line 252, in get_workspace
File "site-packages\viv_utils\__init__.py", line 86, in getWorkspace
File "site-packages\vivisect\__init__.py", line 2345, in saveWorkspace
File "site-packages\vivisect\storage\basicfile.py", line 15, in saveWorkspace
File "site-packages\vivisect\storage\basicfile.py", line 24, in vivEventsToFile
IOError: [Errno 13] Permission denied: 'c:\\windows\\notepad.exe.viv'
[2616] Failed to execute script main

# Fixed code
def get_extractor_py2(path, format):
    import capa.features.extractors.viv

    vw = get_workspace(path, format, should_save=False)

    try:
        vw.saveWorkspace()
    except IOError:
        # see #168 for discussion around how to handle non-writable directories
        logger.info(
            "source directory is not writable, won't save intermediate workspace"
        )

    return capa.features.extractors.viv.VivisectFeatureExtractor(vw, path)
# Buggy code
def get_functions(self):
    for f in capa.features.extractors.ida.helpers.get_functions(
        ignore_thunks=True, ignore_libs=True
    ):
        yield add_va_int_cast(f)


# Traceback (ImportError)
IDAPython: Error while calling Python callback <OnCreate>:
Traceback (most recent call last):
File "ida_capa_explorer.py", line 99, in OnCreate
self.load_capa_results()
File "capa/capa/ida/ida_capa_explorer.py", line 342, in load_capa_results
capabilities = capa.main.find_capabilities(rules, capa.features.extractors.ida.IdaFeatureExtractor(), True)
File "capa\capa\main.py", line 99, in find_capabilities
for f in tqdm.tqdm(extractor.get_functions(), disable=disable_progress, unit=" functions"):
File "C:\Python27\lib\site-packages\tqdm\_tqdm.py", line 997, in __iter__
for obj in iterable:
File "capa\capa\features\extractors\ida\__init__.py", line 54, in get_functions
from capa.features.extractors.ida import helpers
ImportError: cannot import name helpers
INFO:capa:form closed.
Python>sys.version
'2.7.15 (v2.7.15:ca079a3ea3, Apr 30 2018, 16:30:26) [MSC v.1500 64 bit (AMD64)]'

# Fixed code
def get_functions(self):
    import capa.features.extractors.ida.helpers as ida_helpers

    for f in ida_helpers.get_functions(ignore_thunks=True, ignore_libs=True):
        yield add_va_int_cast(f)
# Buggy code
def get_instructions(self, f, bb):
    for insn in capa.features.extractors.ida.helpers.get_instructions_in_range(
        bb.start_ea, bb.end_ea
    ):
        yield add_va_int_cast(insn)


# Traceback (ImportError)
IDAPython: Error while calling Python callback <OnCreate>:
Traceback (most recent call last):
File "ida_capa_explorer.py", line 99, in OnCreate
self.load_capa_results()
File "capa/capa/ida/ida_capa_explorer.py", line 342, in load_capa_results
capabilities = capa.main.find_capabilities(rules, capa.features.extractors.ida.IdaFeatureExtractor(), True)
File "capa\capa\main.py", line 99, in find_capabilities
for f in tqdm.tqdm(extractor.get_functions(), disable=disable_progress, unit=" functions"):
File "C:\Python27\lib\site-packages\tqdm\_tqdm.py", line 997, in __iter__
for obj in iterable:
File "capa\capa\features\extractors\ida\__init__.py", line 54, in get_functions
from capa.features.extractors.ida import helpers
ImportError: cannot import name helpers
INFO:capa:form closed.
Python>sys.version
'2.7.15 (v2.7.15:ca079a3ea3, Apr 30 2018, 16:30:26) [MSC v.1500 64 bit (AMD64)]'

# Fixed code
def get_instructions(self, f, bb):
    import capa.features.extractors.ida.helpers as ida_helpers

    for insn in ida_helpers.get_instructions_in_range(bb.start_ea, bb.end_ea):
        yield add_va_int_cast(insn)
# Buggy code
def assert_can_release():
    assert not IS_PULL_REQUEST, "Cannot release from pull requests"
    assert has_travis_secrets(), "Cannot release without travis secure vars"


# Traceback (AttributeError)
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "...\hypothesis\strategies\_internal\strategies.py", line 314, in example
example_generating_inner_function()
File "...\hypothesis\strategies\_internal\strategies.py", line 302, in example_generating_inner_function
@settings(
File "...\hypothesis\core.py", line 1023, in wrapped_test
processed_args = process_arguments_to_given(
File "...\hypothesis\core.py", line 441, in process_arguments_to_given
search_strategy.validate()
File "...\hypothesis\strategies\_internal\strategies.py", line 377, in validate
self.do_validate()
File "...\hypothesis\strategies\_internal\collections.py", line 39, in do_validate
s.validate()
File "...\hypothesis\strategies\_internal\strategies.py", line 377, in validate
self.do_validate()
File "...\hypothesis\strategies\_internal\strategies.py", line 638, in do_validate
self.mapped_strategy.validate()
File "...\hypothesis\strategies\_internal\strategies.py", line 377, in validate
self.do_validate()
File "...\hypothesis\strategies\_internal\lazy.py", line 118, in do_validate
w.validate()
File "...\hypothesis\strategies\_internal\strategies.py", line 377, in validate
self.do_validate()
File "...\hypothesis\strategies\_internal\strategies.py", line 638, in do_validate
self.mapped_strategy.validate()
File "...\hypothesis\strategies\_internal\strategies.py", line 377, in validate
self.do_validate()
File "...\hypothesis\strategies\_internal\collections.py", line 39, in do_validate
s.validate()
File "...\hypothesis\strategies\_internal\strategies.py", line 377, in validate
self.do_validate()
File "...\hypothesis\strategies\_internal\strategies.py", line 595, in do_validate
for e in self.element_strategies:
File "...\hypothesis\strategies\_internal\strategies.py", line 570, in element_strategies
if not arg.is_empty:
File "...\hypothesis\strategies\_internal\strategies.py", line 125, in accept
recur(self)
File "...\hypothesis\strategies\_internal\strategies.py", line 121, in recur
mapping[strat] = getattr(strat, calculation)(recur)
File "...\hypothesis\strategies\_internal\lazy.py", line 86, in calc_is_empty
return recur(self.wrapped_strategy)
File "...\hypothesis\strategies\_internal\strategies.py", line 121, in recur
mapping[strat] = getattr(strat, calculation)(recur)
File "...\hypothesis\strategies\_internal\deferred.py", line 80, in calc_is_empty
return recur(self.wrapped_strategy)
File "...\hypothesis\strategies\_internal\deferred.py", line 55, in wrapped_strategy
del self.__definition
AttributeError: _DeferredStrategy__definition

# Fixed code
def assert_can_release():
    assert not IS_PULL_REQUEST, "Cannot release from pull requests"
# Buggy code
def get_entry_points():
    yield from pkg_resources.iter_entry_points("hypothesis")


# Traceback (ImportError)
Traceback (most recent call last):
File "/run/shm/bazel-sandbox.58afe50bce693a45c42be3530f1579c8f12116963ef7e303ad72c1a2b06ed6f2/processwrapper-sandbox/4962/execroot/__main__/bazel-out/k8-fastbuild/bin/perception/cloud/proto_format_test.runfiles/internal_pip_dependency_hypothesis/pypi__hypothesis/hypothesis/entry_points.py", line 27, in <module>
from importlib import metadata as importlib_metadata
ImportError: cannot import name 'metadata'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/run/shm/bazel-sandbox.58afe50bce693a45c42be3530f1579c8f12116963ef7e303ad72c1a2b06ed6f2/processwrapper-sandbox/4962/execroot/__main__/bazel-out/k8-fastbuild/bin/perception/cloud/proto_format_test.runfiles/internal_pip_dependency_hypothesis/pypi__hypothesis/hypothesis/entry_points.py", line 29, in <module>
import importlib_metadata  # type: ignore  # mypy thinks this is a redefinition
ModuleNotFoundError: No module named 'importlib_metadata'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "common/python/runtime/python3_wrapper.py", line 36, in <module>
eval(compiled_code, module.__dict__)
File "/run/shm/bazel-sandbox.58afe50bce693a45c42be3530f1579c8f12116963ef7e303ad72c1a2b06ed6f2/processwrapper-sandbox/4962/execroot/__main__/bazel-out/k8-fastbuild/bin/perception/cloud/proto_format_test.runfiles/__main__/perception/cloud/proto_format_test.py", line 7, in <module>
import hypothesis as hyp
File "/run/shm/bazel-sandbox.58afe50bce693a45c42be3530f1579c8f12116963ef7e303ad72c1a2b06ed6f2/processwrapper-sandbox/4962/execroot/__main__/bazel-out/k8-fastbuild/bin/perception/cloud/proto_format_test.runfiles/internal_pip_dependency_hypothesis/pypi__hypothesis/hypothesis/__init__.py", line 27, in <module>
from hypothesis.entry_points import run
File "/run/shm/bazel-sandbox.58afe50bce693a45c42be3530f1579c8f12116963ef7e303ad72c1a2b06ed6f2/processwrapper-sandbox/4962/execroot/__main__/bazel-out/k8-fastbuild/bin/perception/cloud/proto_format_test.runfiles/internal_pip_dependency_hypothesis/pypi__hypothesis/hypothesis/entry_points.py", line 38, in <module>
import pkg_resources
ModuleNotFoundError: No module named 'pkg_resources'

# Fixed code
def get_entry_points():
    yield from ()
# Buggy code
def cacheable(fn: T) -> T:
    @proxies(fn)
    def cached_strategy(*args, **kwargs):
        try:
            kwargs_cache_key = {(k, convert_value(v)) for k, v in kwargs.items()}
        except TypeError:
            return fn(*args, **kwargs)
        cache_key = (fn, tuple(map(convert_value, args)), frozenset(kwargs_cache_key))
        try:
            if cache_key in STRATEGY_CACHE:
                return STRATEGY_CACHE[cache_key]
        except TypeError:
            return fn(*args, **kwargs)
        else:
            result = fn(*args, **kwargs)
            if not isinstance(result, SearchStrategy) or result.is_cacheable:
                STRATEGY_CACHE[cache_key] = result
            return result

    cached_strategy.__clear_cache = STRATEGY_CACHE.clear
    return cached_strategy


# Traceback (AssertionError)
File /.virtualenvs/schemathesis/lib/python3.8/site-packages/hypothesis/strategies/_internal/core.py", line 172, in cached_strategy
E             STRATEGY_CACHE[cache_key] = result
E           File "/.virtualenvs/schemathesis/lib/python3.8/site-packages/hypothesis/internal/cache.py", line 121, in __setitem__
E             assert evicted.score <= self.data[0].score
E         AssertionError: assert [1, 10062] <= [1, 6901]

# Fixed code
def cacheable(fn: T) -> T:
    @proxies(fn)
    def cached_strategy(*args, **kwargs):
        try:
            kwargs_cache_key = {(k, convert_value(v)) for k, v in kwargs.items()}
        except TypeError:
            return fn(*args, **kwargs)
        cache_key = (fn, tuple(map(convert_value, args)), frozenset(kwargs_cache_key))
        cache = get_cache()
        try:
            if cache_key in cache:
                return cache[cache_key]
        except TypeError:
            return fn(*args, **kwargs)
        else:
            result = fn(*args, **kwargs)
            if not isinstance(result, SearchStrategy) or result.is_cacheable:
                cache[cache_key] = result
            return result

    cached_strategy.__clear_cache = clear_cache
    return cached_strategy
# Buggy code
def cached_strategy(*args, **kwargs):
    try:
        kwargs_cache_key = {(k, convert_value(v)) for k, v in kwargs.items()}
    except TypeError:
        return fn(*args, **kwargs)
    cache_key = (fn, tuple(map(convert_value, args)), frozenset(kwargs_cache_key))
    try:
        if cache_key in STRATEGY_CACHE:
            return STRATEGY_CACHE[cache_key]
    except TypeError:
        return fn(*args, **kwargs)
    else:
        result = fn(*args, **kwargs)
        if not isinstance(result, SearchStrategy) or result.is_cacheable:
            STRATEGY_CACHE[cache_key] = result
        return result


# Traceback (AssertionError)
File /.virtualenvs/schemathesis/lib/python3.8/site-packages/hypothesis/strategies/_internal/core.py", line 172, in cached_strategy
E             STRATEGY_CACHE[cache_key] = result
E           File "/.virtualenvs/schemathesis/lib/python3.8/site-packages/hypothesis/internal/cache.py", line 121, in __setitem__
E             assert evicted.score <= self.data[0].score
E         AssertionError: assert [1, 10062] <= [1, 6901]

# Fixed code
def cached_strategy(*args, **kwargs):
    try:
        kwargs_cache_key = {(k, convert_value(v)) for k, v in kwargs.items()}
    except TypeError:
        return fn(*args, **kwargs)
    cache_key = (fn, tuple(map(convert_value, args)), frozenset(kwargs_cache_key))
    cache = get_cache()
    try:
        if cache_key in cache:
            return cache[cache_key]
    except TypeError:
        return fn(*args, **kwargs)
    else:
        result = fn(*args, **kwargs)
        if not isinstance(result, SearchStrategy) or result.is_cacheable:
            cache[cache_key] = result
        return result
# Buggy code
def __init__(self, max_length, draw_bytes):
    self.max_length = max_length
    self.is_find = False
    self._draw_bytes = draw_bytes
    self.overdraw = 0
    self.level = 0
    self.block_starts = {}
    self.blocks = []
    self.buffer = bytearray()
    self.output = ""
    self.status = Status.VALID
    self.frozen = False
    global global_test_counter
    self.testcounter = global_test_counter
    global_test_counter += 1
    self.start_time = benchmark_time()
    self.events = set()
    self.forced_indices = set()
    self.capped_indices = {}
    self.interesting_origin = None
    self.tags = set()
    self.draw_times = []
    self.__intervals = None

    self.examples = []
    self.example_stack = []
    self.has_discards = False

    self.start_example(TOP_LABEL)


# Traceback (IndexError)
File "/home/david/hypothesis/hypothesis-python/src/hypothesis/internal/conjecture/engine.py", line 1325, in greedy_shrink
self.shrink_offset_pairs()
File "/home/david/hypothesis/hypothesis-python/src/hypothesis/internal/conjecture/engine.py", line 1581, in shrink_offset_pairs
block_val = int_from_block(j)
File "/home/david/hypothesis/hypothesis-python/src/hypothesis/internal/conjecture/engine.py", line 1551, in int_from_block
return int_from_bytes(current[i])
IndexError: list index out of range

# Fixed code
def __init__(self, max_length, draw_bytes):
    self.max_length = max_length
    self.is_find = False
    self._draw_bytes = draw_bytes
    self.overdraw = 0
    self.level = 0
    self.block_starts = {}
    self.blocks = []
    self.buffer = bytearray()
    self.output = ""
    self.status = Status.VALID
    self.frozen = False
    global global_test_counter
    self.testcounter = global_test_counter
    global_test_counter += 1
    self.start_time = benchmark_time()
    self.events = set()
    self.forced_indices = set()
    self.forced_blocks = set()
    self.capped_indices = {}
    self.interesting_origin = None
    self.tags = set()
    self.draw_times = []
    self.__intervals = None

    self.examples = []
    self.example_stack = []
    self.has_discards = False

    self.start_example(TOP_LABEL)
# Buggy code
def write(self, string):
    self.__assert_not_frozen("write")
    self.__check_capacity(len(string))
    assert isinstance(string, hbytes)
    original = self.index
    self.__write(string)
    self.forced_indices.update(hrange(original, self.index))
    return string


# Traceback (IndexError)
File "/home/david/hypothesis/hypothesis-python/src/hypothesis/internal/conjecture/engine.py", line 1325, in greedy_shrink
self.shrink_offset_pairs()
File "/home/david/hypothesis/hypothesis-python/src/hypothesis/internal/conjecture/engine.py", line 1581, in shrink_offset_pairs
block_val = int_from_block(j)
File "/home/david/hypothesis/hypothesis-python/src/hypothesis/internal/conjecture/engine.py", line 1551, in int_from_block
return int_from_bytes(current[i])
IndexError: list index out of range

# Fixed code
def write(self, string):
    self.__assert_not_frozen("write")
    self.__check_capacity(len(string))
    assert isinstance(string, hbytes)
    original = self.index
    self.__write(string)
    self.forced_indices.update(hrange(original, self.index))
    self.forced_blocks.add(len(self.blocks) - 1)
    return string