#NEWLINE# def testBasecall( self ) : #NEWLINE# #INDENT# valid = '20|14369|14370|G/A|29|+\n20|17329|17331|TT/AA|3|+\n' . replace ( '|' , '\t' ) #NEWLINE# out = StringIO . StringIO ( '' ) #NEWLINE# ngsutils . bed . fromvcf . _bed_fromvcf ( vcftest , out = out ) #NEWLINE# self . assertEqual ( out . getvalue ( ) , self )