#NEWLINE# def __init__( self , genome_fasta , genome_queries , options ) : #NEWLINE# #INDENT# self . mGenomeFasta = genome_fasta #NEWLINE# self . mQueriesFasta = queries_fasta #NEWLINE# self . options = options #NEWLINE# self . mIdFormat = options . output_format #NEWLINE# if self . options . output_filename_pattern : #NEWLINE# #INDENT# self . mOutFile = open ( ( self . options . output_filename_pattern % self . mName ) , 'w' ) #NEWLINE# #UNINDENT# else : #NEWLINE# #INDENT# self . mOutFile = self . options . stdout #NEWLINE# #UNINDENT# self . mId = 0