ghanaopendata/ghanaian-research-english huggingface dataset:
Compositionally stratified lithosphere and carbonatite metasomatism recorded in mantle xenoliths from the Western Qinling (Central China)

In Central China, long-distance effects from collision between the North China and Yangtze cratons, uplift of the Tibetan Plateau and subduction of the Pacific Ocean are believed to converge in the Western Qinling. Mantle xenoliths from Baiguan and Haoti kamafugites in the Western Qinling were investigated to understand the lithospheric structure and mantle metasomatism beneath the orogenic belt. The Western Qinling lithosphere with depths of at least 120 km is geothermally hot and compositionally stratified, companied by a step-wise decrease in fertility with depth. The shallower portion of the lithospheric mantle is represented by type 2 xenoliths which lack alteration and deformation, and have fertile characteristics in compositions. The dominant rock type in the mantle section is the type 1 peridotites, which have had undergone relatively higher melt extraction and subsequent metasomatism. In-situ trace element data for minerals in the Baiguan and Haoti xenoliths are presented in this study. Baiguan clinopyroxenes have high LREE and show Ba, Th, U, Pb, Sr enrichment and negative Hf and Y anomalies, but the Haoti clinopyroxenes have large variations in trace elements and complicated distributions in LILE, and show negative Ti, Zr and Hf anomalies. Clinopyroxenes from both xenolith types have Ti/Eu and (La/Yb)N ratios in large ranges of 902-15,813 and 0-20, respectively. The petrological and geochemical characteristics suggest that the Western Qinling peridotites had been subjected to silicate and subsequent carbonatite metasomatism, and that carbonatite metasomatism was predominant in Baiguan but lesser in Haoti. Comparisons with the Western Qinling carbonatites and world-wide carbonatites indicate that carbonatite melts involved in the metasomatism originated from deep mantle and most likely related to carbonatite magma, with contributions from subducted oceanic crust. The type 2 peridotites, comprising clinopyroxene megacrysts and clinopyroxenite display similar trace element abundances and patterns, suggesting a close affinity in petrogenesis. Crown Copyright © 2010.

Source: UG
Composotion and provenance of the upper Cretaceous to eocone sandstones in Central Palawan, Philippines: Constraints on the tectonic development of Palawan

Sandstones from the Upper Cretaceous to Eocene succession of Central Palawan are rich in quartz grains and acidic volcanic rock fragments. Potassium feldspar grains and granitic rock fragments are commonly observed. The moderate to high SiO2 and low FeO plus MgO contents of the sandstones support the proposal that clasts were derived from a continental source region. Southern China (Kwangtung and Fukien regions) is inferred to be the source area of the sandstones. The sedimentary facies of the Upper Cretaceous to Eocene succession consist of turbidite and sandstones, suggesting that they were deposited in the deep sea portions of submarine-fans and basin plains situated along a continental margin. These features indicate that the Upper Cretaceous to Eocene succession of the Central Palawan were derived and drifted from the southern margin of China. The tectonic history related to the formation of Palawan Island is also discussed.

Source: UG
Compound Formation in Lɛtɛ

This paper describes the phenomenon of compounding in Lɛtɛ (Larteh), a Guan language of the Kwa language phylum. Compounding is a word-formation process which involves the combination of at least two potentially free forms belonging to open word classes (Aikhenvald 2007: 24). Compounding in Lεtε is a productive derivational process which leads to the formation of nominal compounds through the juxtaposition of two free morphemes. Three types of nominal compounds are derived: the noun-noun; noun-verb; noun-adjective compounds. Besides these three, compound numerals are also found in Lεtε. Nominal compounds in Lɛtɛ are of the endocentric type with a fixed order: modifier- head. The formation of compounds involves regressive assimilation, vowel elision and changes in the basic tone pattern of stems. Nominal compounds with the exception of noun-verb compounds inflect for number. Syntactically, the nominal compounds behave like prototypical nouns in Lɛtɛ. Like many of the world’s languages, nominal compounds in Lɛtɛ tend to have more specific meanings than any of the words that make up the compound (Payne 1997: 93).

Source: UG
A comprehensive analysis of drug resistance molecular markers and Plasmodium falciparum genetic diversity in two malaria endemic sites in Mali

Background: Drug resistance is one of the greatest challenges of malaria control programme in Mali. Recent advances in next-generation sequencing (NGS) technologies provide new and effective ways of tracking drug-resistant malaria parasites in Africa. The diversity and the prevalence of Plasmodium falciparum drug-resistance molecular markers were assessed in Dangassa and Nioro-du-Sahel in Mali, two sites with distinct malaria transmission patterns. Dangassa has an intense seasonal malaria transmission, whereas Nioro-du-Sahel has an unstable and short seasonal malaria transmission. Methods: Up to 270 dried blood spot samples (214 in Dangassa and 56 in Nioro-du-Sahel) were collected from P. falciparum positive patients in 2016. Samples were analysed on the Agena MassARRAY ® iPLEX platform. Specific codons were targeted in Pfcrt, Pfmdr1, Pfdhfr, and Pfdhps, Pfarps10, Pfferredoxin, Pfexonuclease and Pfmdr2 genes. The Sanger’s 101-SNPs-barcode method was used to assess the genetic diversity of P. falciparum and to determine the parasite species. Results: The Pfcrt_76T chloroquine-resistance genotype was found at a rate of 64.4% in Dangassa and 45.2% in Nioro-du-Sahel (p = 0.025). The Pfdhfr_51I-59R-108N pyrimethamine-resistance genotype was 14.1% and 19.6%, respectively in Dangassa and Nioro-du-Sahel. Mutations in the Pfdhps_S436-A437-K540-A581-613A sulfadoxine-resistance gene was significantly more prevalent in Dangassa as compared to Nioro-du-Sahel (p = 0.035). Up to 17.8% of the isolates from Dangassa vs 7% from Nioro-du-Sahel harboured at least two codon substitutions in this haplotype. The amodiaquine-resistance Pfmdr1_N86Y mutation was identified in only three samples (two in Dangassa and one in Nioro-du-Sahel). The lumefantrine-reduced susceptibility Pfmdr1_Y184F mutation was found in 39.9% and 48.2% of samples in Dangassa and Nioro-du-Sahel, respectively. One piperaquine-resistance Exo_E415G mutation was found in Dangassa, while no artemisinin resistance genetic-background were identified. A high P. falciparum diversity was observed, but no clear genetic aggregation was found at either study sites. Higher multiplicity of infection was observed in Dangassa with both COIL (p = 0.04) and Real McCOIL (p = 0.02) methods relative to Nioro-du-Sahel. Conclusions: This study reveals high prevalence of chloroquine and pyrimethamine-resistance markers as well as high codon substitution rate in the sulfadoxine-resistance gene. High genetic diversity of P. falciparum was observed. These observations suggest that the use of artemisinins is relevant in both Dangassa and Nioro-du-Sahel.

Source: UG
Comprehensive analysis of Fc-mediated IgM binding to the Plasmodium falciparum erythrocyte membrane protein 1 family in three parasite clones

The Department of Immunology conducts research in the field of immunology of infectious and non-infectious diseases. The Department has the overall goal of contributing knowledge to better diagnosis, management, control and prevention of infectious and non-infectious diseases in Ghana and worldwide. This is consistent with the overall strategy of the Noguchi Memorial Institute for Medical Research (NMIMR) and in line with the strategy of the College of Health Sciences of the University of Ghana.

Source: UG
Comprehensive Blood Metabolome and Exposome Analysis, Annotation, and Interpretation in E-Waste Workers.

Abstract: Background: Electronic and electrical waste (e-waste) production has emerged to be of global environmental public health concern. E-waste workers, who are frequently exposed to hazardous chemicals through occupational activities, face considerable health risks. Methods: To investigate the metabolic and exposomic changes in these workers, we analyzed whole blood samples from 100 male e-waste workers and 49 controls from the GEOHealth II project (2017–2018 in Accra, Ghana) using LC-MS/MS. A specialized computational workflow was established for exposomics data analysis, incorporating two curated reference libraries for metabolome and exposome profiling. Two feature detection algorithms, asari and centWave, were applied. Results: In comparison to cent-Wave, asari showed better sensitivity in detecting MS features, particularly at trace levels. Principal component analysis demonstrated distinct metabolic profiles between e-waste workers and controls, revealing significant disruptions in key metabolic pathways, including steroid hormone biosynthesis, drug metabolism, bile acid biosynthesis, vitamin metabolism, and prostaglandin biosynthesis. Correlation analyses linked metal exposures to alterations in hundreds to thousands of metabolic features. Functional enrichment analysis highlighted significant perturbations in pathways related to liver function, vitamin metabolism, linoleate metabolism, and dynorphin signaling, with the latter being observed for the first time in e-waste workers. Conclusions: This study provides new insights into the biological impact of prolonged metal exposure in e-waste workers.

Source: UG
Comprehensive Health Risk Assessment Of Urban Ambient Air Pollution (PM2.5, NO2 And O3) In Ghana.

Most research activities involve the use of molecular methods such as regular PCR (PCR), quantitative PCR (Q-PCR), genomic sequence and analysis using different software, genetic engineering, probe hybridization techniques, biological and molecular cloning, evaluation of immune markers for laboratory diagnosis of infections, serological assays involving the use of rapid tests, ELISA-based evaluations and immunofluorescent assay techniques.

Source: UG
A comprehensive resequence-analysis of 250 kb region of 8q24.21 in men of African ancestry

BACKGROUND Genome-wide association studies (GWAS) have identified that a ∼1 M region centromeric to the MYC oncogene on chromosome 8q24.21 harbors at least five independent loci associated with prostate cancer risk and additional loci associated with cancers of breast, colon, bladder, and chronic lymphocytic leukemia (CLL). Because GWAS identify genetic markers that may be indirectly associated with disease, fine-mapping based on sequence analysis provides important insights into patterns of linkage disequilibrium (LD) and is critical in defining the optimal variants to nominate for biological follow-up. METHODS To catalog variation in individuals of African ancestry, we resequenced a region (250 kb; chr8:128,050,768-128,300,801, hg19) containing several prostate cancer susceptibility loci as well as a locus associated with CLL. Our samples included 78 individuals from Ghana and 47 of African-Americans from Johns Hopkins University. RESULTS After quality control metrics were applied to next-generation sequence data, 1,838 SNPs were identified. Of these, 285 were novel and not yet reported in any public database. Using genotypes derived from sequencing, we refined the LD and recombination hotspots within the region and determined a set of tag SNPs to be used in future fine-mapping studies. Based on LD, we annotated putative risk loci and their surrogates using ENCODE data, which should help guide laboratory studies. CONCLUSIONS In comparison to the 1000 Genome Project data, we have identified additional variants that could be important in establishing priorities for future functional work designed to explain the biological basis of associations between SNPs and both prostate cancer and CLL.© 2014 Wiley Periodicals, Inc.

Source: UG
A comprehensive study of easter lily poisoning in cats

This study was conducted with 3 objectives in mind: first, to identify the toxic fraction (aqueous or organic) in leaves and flowers; second, to identify diagnostic marker(s) of toxicosis in cats; and, third, to evaluate the morphologic effects of intoxication. The study was conducted in 2 phases. Phase 1 was to identify which extract, organic or aqueous, was nephrotoxic and also to determine the appropriate dose for use in the phase 2 studies. Results indicated that only the aqueous extracts of leaves and flowers were nephrotoxic and pancreotoxic. To identify the proximate toxic compound, cats in the phase 2 study were orally exposed to subfractions of the aqueous flower extract, 1 subfraction per cat. Results confirmed vomiting, depression, poly- uria, polydipsia, azotemia, glucosuria, proteinuria, and isosthenuria as toxic effects of the Easter lily plant. Another significant finding in serum was elevated creatinine kinase. Significant histologic kidney changes in- cluded acute necrosis of proximal convoluted tubules and degeneration of pancreatic acinar cells. Renal ultra- structural changes included swollen mitochondria, megamitochondria, edema, and lipidosis. Subfraction IIa 3 of the aqueous floral extract contained most of the toxic compound(s). These studies reproduced the clinical disease, identified the most toxic fraction of the Easter lily, and helped characterize the clinical pathology, histopathology, and ultrastructural pathology associated with the disease.

Source: UG
Computational Identification of Potential Anti-Inflammatory Natural Compounds Targeting the p38 Mitogen-Activated Protein Kinase (MAPK): Implications for COVID-19-Induced Cytokine Storm

The Department of Parasitology conducts research into parasitic diseases of public health importance with the overall goal of reducing their transmission and the heavy disease burden that they impose on affected populations. The Department maintains focus on parasitic diseases in general. These include major diseases such as malaria, and others listed under the Neglected Tropical Diseases (NTD) control initiative such as, lymphatic filariasis, onchocerciasis, schistosomiasis, soil-transmitted helminthiasis, trypanosomiasis and leishmaniasis.

Source: UG
Computational Screening of Neuropilin-1 Unveils Novel Potential Anti-SARS-CoV-2 Therapeutics

The Department of Parasitology conducts research into parasitic diseases of public health importance with the overall goal of reducing their transmission and the heavy disease burden that they impose on affected populations. The Department maintains focus on parasitic diseases in general. These include major diseases such as malaria, and others listed under the Neglected Tropical Diseases (NTD) control initiative such as, lymphatic filariasis, onchocerciasis, schistosomiasis, soil-transmitted helminthiasis, trypanosomiasis and leishmaniasis.

Source: UG
Computed tomographic patterns of intracranial infarcts in Ghanaians.

Computed tomography has given a boost to intracranial imaging in general, and the diagnosis of the subtypes of Cerebrovascular Accident (CVA) in particular. In this study of 1,172 cases of CVA examined by Computed Tomography (CT), 552 (47.10%) showed features of cerebral infarction. There was a male prevalence in the study and the mean age was 59.8 years. As in all infarcts the diagnostic appearance was a wedge shaped hypodensity within the brain parenchyma. This was most often found in the parietal lobe (73.6%) and was always without a mass effect. Even though solitary infarcts were frequent, multiple lesions were reported in 9.3% of cases and these group of respondents presented mostly with seizures. Diabetes mellitus was an important predisposing factor and was found in 163% of cases, while hypertension was found in only 9.1% of cases studied. Other CT findings were cerebral and cerebrellar atrophy. Calcification of the falx and the basal ganglia were also noted.

Source: UG
Computer Technology and Teaching of Accounting by Universities in Ghana

The past several years have seen phenomenal efforts across the globe to adopt information and communication technology (ICT) in every aspect of education due to the several benefits it presents. The areas that seem to be attracting much attention are teaching, learning and research. Universities in Africa have not been left out in this development, but compared to other countries, regions and continents, very little seems to have been done in assessing the extent of ICT adoption in the teaching and learning of the various disciplines, including accounting. Adopting the survey strategies, this paper explores the use of ICT in the teaching of accounting in African Universities, using evidence from Ghana. Results show that ICT is used in the teaching of accounting by universities; more in public than private universities. Moreover, more accounting students in private universities are exposed to ICT resources like accounting software than the public universities. In addition, PowerPoint presentations, emails, and the internet in general, are the commonly used ICT resources in the teaching of accounting.

Source: UG
Computer Vision–Assisted Dietary Assessment Through Mobile Phones In Female Youth In Urban Ghana: Validity Against Weighed Records And Comparison With 24-H Recalls.

The overall goal of the department is to conduct research and provide solutions to nutritional problems in Ghana. In pursuance of this goal, the Nutrition Department since its inception has focused its research in the areas of maternal, infant and young child nutrition, food consumption and food security and micronutrient deficiency and interventions. These are priority food and nutrition problems in Ghana.

Source: UG
Computer-aided identification of potential inhibitors against Necator americanus glutathione S-transferase 3

Hookworm infection is caused by the blood-feeding hookworm gastrointestinal nematodes. Its harmful effects include anemia and retarded growth and are common in the tropics. A current control method involves the mass drug administration of synthetic drugs, mainly albendazole and mebendazole. There are however concerns of low efficacy and drug resistance due to their repeated and excessive use. Although, Necator americanus glutathione S-transferase 3 (Na-GST-3) is a notable target, using natural product libraries for computational elucidation of promising leads is underexploited. This study sought to use pharmacoinformatics techniques to identify compounds of natural origins with the potential to be further optimized as promising inhibitors. A compendium of 3182 African natural products together with five known helminth GST inhibitors including Cibacron blue was screened against the active sites of the Na-GST-3 structure (PDB ID: 3W8S). The hit compounds were profiled to ascertain the mechanisms of binding, anthelmintic bioactivity, physicochemical and pharmacokinetic properties. The AutoDock Vina docking protocol was validated by obtaining 0.731 as the area under the curve calculated via the receiver operating characteristics curve. Four compounds comprising ZINC85999636, ZINC35418176, ZINC14825190, and Dammarane Triterpene13 were identified as potential lead compounds with binding energies less than −9.0 kcal/mol. Furthermore, the selected compounds formed key intermolecular interactions with critical residues Tyr95, Gly13 and Ala14. Notably, ZINC85999636, ZINC14825190, and dammarane triterpene13 were predicted as anthelmintics, whilst all the four molecules shared structural similarities with known inhibitors. Molecular modelling showed that the compounds had reasonably good binding free energies. More so, they had high binding affinities when screened against other variants of the Na-GST, namely Na-GST-1 and Na-GST-2. Ligand quality assessment using ligand efficiency dependent lipophilicity, ligand efficiency, ligand efficiency scale and fit quality scale showed the molecules are worthy candidates for further optimization. The inhibitory potentials of the molecules warrant in vitro studies to evaluate their effect on the heme regulation mechanisms.

Source: UG
Conceiving global culture: Frantz Fanon and the politics of identity

The article introduces Frantz Fanon’s notion of cultural humanism as a new way of conceiving global culture and, simultaneously, models a new framework for understanding the ethics and politics of identity today. Drawing critical insights from Fanon’s ‘Racism and Culture’ and The Wretched of the Earth as well as the work of several other non-essentialist thinkers, the article develops an anti-essentialist theory of (global) culture, asserting that culture and its values constitute a contested universal that all human beings are equal claimants to its appropriation, such that a particular putative culture is neither the basis of any individual or group identity, nor the grounds for treating anyone unjustly. In problematising global culture, the article foils Fanon’s cultural humanism against a tradition of essentialist conceptions of culture in the thoughts of prominent Euro-American writers, from Immanuel Kant to Samuel P. Huntington. These other authors are usually thought of as developing theories of global culture, but evidently ended up with narrow/nationalistic, and racist and essentialist, notions of culture. At the same time, we choose Fanon and his theory of global culture as company throughout the article not only because his work and activism aimed to undo one of the most egregio us consequences of false conceptions of (global) culture, colonialism, but because his work has continued to be relevant in many contemporary liberation/ humanistic discourses, even as he has sometimes been narrowly read as defending cultural nationalism.

Source: UG
Concentration and avidity of antibodies to different circumsporozoite epitopes correlate with RTS,S/AS01E malaria vaccine efficacy

The Department of Immunology conducts research in the field of immunology of infectious and non-infectious diseases. The Department has the overall goal of contributing knowledge to better diagnosis, management, control and prevention of infectious and non-infectious diseases in Ghana and worldwide. This is consistent with the overall strategy of the Noguchi Memorial Institute for Medical Research (NMIMR) and in line with the strategy of the College of Health Sciences of the University of Ghana.

Source: UG