gebhart/patrepeval huggingface dataset:
Acquired Resistance to Temozolomide in Glioma Cell Lines: Molecular Mechanisms and Potential Translational Applications (2010)

Treatment for glioblastoma multiforme includes the alkylating agent temozolomide combined with ionizing radiation. Persistent O6-guanine methylation by temozolomide in O6-methylguanine methyl transferase negative tumors causes cytotoxic lesions recognized by DNA mismatch repair, triggering apoptosis. Resistance (intrinsic or acquired) presents obstacles to successful temozolomide treatment, limiting drug efficacy and life expectancy. Two glioma cell lines, SNB19 and U373, sensitive to temozolomide (GI(50) values 36 and 68 microM, respectively) were exposed to increasing temozolomide concentrations (1-100 microM). Variant cell lines (SNB19VR, U373VR) were generated that displayed acquired temozolomide resistance (GI(50) values 280 and 289 microM, respectively). Cross-resistance to mitozolomide was observed in U373VR cells only. In clonogenic and MTT assays, methylguanine methyltransferase (MGMT) depletion using O6-benzylguanine sensitized U373VR cells to temozolomide, indicating the resistance mechanism involves MGMT re-expression. Indeed, Western blot analyses revealed MGMT protein in cell lysates. In SNB19VR cells, down-regulation of MSH6 message and protein expression may confer temozolomide tolerance. Inhibition of poly(ADP-ribose) polymerase-1 (a key base excision repair (BER) enzyme) partially restored sensitivity, and DNA repair gene arrays demonstrated up-regulation (>5-fold) of BER gene NTL1 in SNB19VR cells. In conclusion, we have developed two glioma cell lines whose distinct mechanisms of acquired resistance to temozolomide, involving expression of MGMT, or inactivation of DNA mismatch repair and recruitment of BER enzymes, are consistent with clinical observations. These cell lines provide valuable models for the development of strategies to combat temozolomide resistance.
[Regulation of the expression of pulmonary arterial collagen by protein kinase C and breviscapine in chronic hypoxic rats]. (2002)

The PKC signal pathway regulates the expression of pulmonary arterial collagen in chronic hypoxic rats which may play an important role in the pathogenesis of pulmonary hypertension and structural remodeling of pulmonary arterials breviscapine can lower hypoxic pulmonary hypertension by inhibiting the effect of PKC and decreasing the expression of pulmonary arterial collagen.
The Aryl Hydrocarbon Receptor: A Review of Its Role in the Physiology and Pathology of the Integument and Its Relationship to the Tryptophan Metabolism (2015)

The aryl hydrocarbon receptor (AHR) is a cytosolic receptor for low molecular weight molecules, of which the most widely recognized ligand is 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), and the most widely recognized effect, chloracne. Adverse effects of manipulation were most recently and graphically demonstrated by the poisoning of Viktor Yushchenko during the Ukrainian presidential elections of 2004. However, recent research has revealed a receptor with wide-ranging, and at times, paradoxical actions. It was arguably among the first biological receptors to be utilized by dermatologists, dating from the time of topical tar preparations as a therapeutic agent. I provide a review outlining the role AHR plays in the development, cellular oxidation/antioxidation, responses to ultraviolet light, melanogenesis, epidermal barrier function, and immune regulation and its relationship to tryptophan metabolism. Finally, I will review the role of AHR in diseases of the integument.
ChemInform Abstract: Allenes in Catalytic Asymmetric Synthesis and Natural Product Syntheses (2012)

Abstract Review: 516 refs.
Variable rate error control for wireless ATM networks (2002)

For mobile wireless ATM networks, error control beyond that provided by the current ATM standards is required to realize reliable communication in this high noise environment. In the proposed scheme the ATM cell header is protected by a relatively powerful FEC code to ensure correct delivery and low cell loss rate. The ATM cell payload is encoded for varying degrees of error protection depending on the type of data contained in the payload. By applying multiple shortened codes to the data field, the same hardware performs the encoding/decoding functions for the different code rates. Analysis shows that significant reductions in cell loss rate (relative to an uncoded system) and varying degrees of payload error protection are realized with a minimal increase in required bandwidth.
Inhibition of Neutrophil Apoptosis by ATP Is Mediated by the P2Y11 Receptor (2007)

Neutrophils undergo rapid constitutive apoptosis that is delayed by a range of pathogen- and host-derived inflammatory mediators. We have investigated the ability of the nucleotide ATP, to which neutrophils are exposed both in the circulation and at sites of inflammation, to modulate the lifespan of human neutrophils. We found that physiologically relevant concentrations of ATP cause a concentration-dependent delay of neutrophil apoptosis (assessed by morphology, annexin V/To-Pro3 staining, and mitochondrial membrane permeabilization). We found that even brief exposure to ATP (10 min) was sufficient to cause a long-lasting delay of apoptosis and showed that the effects were not mediated by ATP breakdown to adenosine. The P2 receptor mediating the antiapoptotic actions of ATP was identified using a combination of more selective ATP analogs, receptor expression studies, and study of downstream signaling pathways. Neutrophils were shown to express the P2Y11 receptor and inhibition of P2Y11 signaling using the antagonist NF157 abrogated the ATP-mediated delay of neutrophil apoptosis, as did inhibition of type I cAMP-dependent protein kinases activated downstream of P2Y11, without effects on constitutive apoptosis. Specific targeting of P2Y11 could retain key immune functions of neutrophils but reduce the injurious effects of increased neutrophil longevity during inflammation.
Neural network based system for testing and diagnostics of analogue integrated circuits (2002)

The paper describes a new implementation of testing-algorithm model for analogue and mixed-signal circuits with neural network evaluation. The simulation system is programmable (different fault models, input stimuli, and different analyses), it covers a wide spectrum of test methods and desired post-process techniques. It is based on the possibilities of HSPICE to manage whole test simulation including the simulations of faulty or fault free circuits on one go as a multi-sweep and file driven simulation. The simulation results (for example: current and voltage data from DC or transient analyses, parameters obtained by the measure command) are read by mathematical package, MATLAB, where these are filtered and then post-processed by means of a neural-network classifier. The approach takes account to tolerances deviations on parameters. Aim of this project is to model test techniques in order to classify their effectiveness in the sense of fault coverage (or degree of detectability). Moreover, the diagnostic results can be formulated. The system was verified on practical test task.
A Novel Hybrid Model for Short-Term Forecasting in PV Power Generation (2014)

The increasing use of solar power as a source of electricity has led to increased interest in forecasting its power output over short-time horizons. Short-term forecasts are needed for operational planning, switching sources, programming backup, reserve usage, and peak load matching. However, the output of a photovoltaic (PV) system is influenced by irradiation, cloud cover, and other weather conditions. These factors make it difficult to conduct short-term PV output forecasting. In this paper, an experimental database of solar power output, solar irradiance, air, and module temperature data has been utilized. It includes data from the Green Energy Office Building in Malaysia, the Taichung Thermal Plant of Taipower, and National Penghu University. Based on the historical PV power and weather data provided in the experiment, all factors that influence photovoltaic-generated energy are discussed. Moreover, five types of forecasting modules were developed and utilized to predict the one-hour-ahead PV output. They include the ARIMA, SVM, ANN, ANFIS, and the combination models using GA algorithm. Forecasting results show the high precision and efficiency of this combination model. Therefore, the proposed model is suitable for ensuring the stable operation of a photovoltaic generation system.
Modification of M1 cells by exogenous introduction of IL6 gene: a model for gene therapy of acute and chronic myeloid leukemia in mice. (1995)

A number of recent studies has shown that animals immunized with cytokine secreting primary tumors show resistance against an unmodified tumor cell challenge. In the present study we have evaluated the potential role of IL6, a myeloid differentiation inducing factor, in modifying myeloid leukemia cells, a tumor so far not challenged by this approach. M1 cells transduced with N2 based retrovirus carrying the murine IL6 gene exhibit morphological and functional alterations. Genetically modified M1 cells show significant reduction in the growth constant coefficient and in the ability to form hematopoietic colonies. Flow cytometry analysis demonstrate increased expression of CD11b, CD18, F4/80, FcR and MHC class II, suggesting driven differentiation towards commitment. Transduced cells secrete high level of autocrine IL6 and, upon activation with LPS, high levels of TNF further indicating a functional alteration and differentiation. The insertion of IL6 gene coding for signals of cell activation and improved expression of MHC antigens into myeloid leukemia cells may enable more effective tumor recognition in vivo, and boost the local as well as the systemic immune-mediated anti-leukemia response.
ChemInform Abstract: Synthesis of Pyrido(2,3‐d)pyrimidines with Trimethoprim Partial Structure. (1989)

Abstract The imidic acid ester hydrochloride (I) reacts with ammonium acetate (II) to give the cyanopyridine (III).
Posterior and Anterior Chamber Aqueous Humor Formation (1955)

Aqueous humor was once thought to be a dialysate of plasma, or to be secreted as such by the ciliary body in a manner analogous to secretion of saliva by the salivary gland. Many observations on aqueous humor, both experimental and clinical, could not be accounted for on the basis of either of these suggested mechanisms of aqueous humor formation. Accordingly, a theory was evolved which envisaged these two processes, secretion and diffusion (dialysis), as taking place simultaneously.* Recent studies of the chemistry of the posterior chamber aqueous humor<sup>3</sup>have provided additional evidence that aqueous humor is formed by at least two processes and, in addition, have shown that there are two kinds of aqueous humor in the eye: one in the posterior chamber, and another, having a different composition, in the anterior chamber. Much more experimentation is required, however, to elucidate fully the general nature of aqueous humor
The distribution of some fungal and bacterial endophytes in maize (<i>Zea mays</i> L.) (1992)

Endophytic bacteria and fungi were isolated from healthy maize plants collected in a field in Devon. The average bacterial counts in the stem core tissues showed that the plant parts closer to the soil were more heavily colonized by bacteria than those near the top of the plants, and that the lower and middle part of the stems hosted the most frequently isolated bacterial species. Of the fungal species isolated, 12 had a relative importance of more than 10% in the core, 15 in the epidermis, and only 5 in the leaves. In general the distribution patterns were different among the three tissue types studied, with core and epidermis of the stems showing almost equal colonization frequencies and the leaves being most heavily colonized. More fungal species were recovered from the core and epidermis of the stem than from the leaves. The fungi most frequently isolated showed some patterns of tissue specificity, with Alternaria alternata almost exclusively associated with the leaves and Aureobasidium pullulans var. melanigerum most often present in the epidermal tissues. Assays showed low fungal colonization of seeds taken from freshly matured cobs and of seeds dried for 8 wk before testing, in contrast to higher colonization frequencies observed for the seeds used for planting. The mean values for fungal isolations in the stem pieces mostly in contact with the soil flora or close to the ground were lower than those of the more centrally placed sections. These areas of low fungal infection yielded the highest bacterial counts. The potential role of bacterial endophytes in biological control is briefly discussed.
Can Subjectivity be Naturalized (2013)

Subjectivity can be naturalized if and only if it can be reduced to nonperspectival “centerless” reality or eliminated altogether.  After briefly discussing Searle’s use of a distinction between epistemic and ontological subjectivity, I show that subjectivity cannot be identified with mind-dependence.  Then I focus on a paradigm example of subjectivity: the first-person perspective.  After explaining the rudimentary and robust stages of a first-person perspective, I turn to a key ingredient of a robust first-person perspective: a self-concept.  Then, I argue that a self-concept expresses a nonconceptual dispositional property, which can be neither eliminated nor reduced without cognitive loss.  Hence, first-person properties (expressed by self-concepts) cannot be reduced to nonperspectival “centerless” reality or eliminated altogether.  Since such first-person properties are paradigmatic of subjectivity, subjectivity cannot be naturalized.
The Taft equation as applied to equilibrium acidities of nitroalkanes, G(CH2)nNO2 (1978)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTThe Taft equation as applied to equilibrium acidities of nitroalkanes, G(CH2)nNO2F. G. Bordwell and John E. BartmessCite this: J. Org. Chem. 1978, 43, 16, 3101–3107Publication Date (Print):August 1, 1978Publication History Published online1 May 2002Published inissue 1 August 1978https://pubs.acs.org/doi/10.1021/jo00410a002https://doi.org/10.1021/jo00410a002research-articleACS PublicationsRequest reuse permissionsArticle Views507Altmetric-Citations39LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Effect of Dye and Conjugation Chemistry on the Biodistribution Profile of Near-Infrared-Labeled Nanobodies as Tracers for Image-Guided Surgery (2017)

Advances in optical imaging technologies have stimulated the development of near-infrared (NIR) fluorescently labeled targeted probes for use in image-guided surgery. As nanobodies have already proven to be excellent candidates for molecular imaging, we aimed in this project to design NIR-conjugated nanobodies targeting the tumor biomarker HER2 for future applications in this field and to evaluate the effect of dye and dye conjugation chemistry on their pharmacokinetics during development. IRDye800CW or IRdye680RD were conjugated either randomly (via lysines) or site-specifically (via C-terminal cysteine) to the anti-HER2 nanobody 2Rs15d. After verification of purity and functionality, the biodistribution and tumor targeting of the NIR-nanobodies were assessed in HER2-positive and -negative xenografted mice. Site-specifically IRDye800CW- and IRdye680RD-labeled 2Rs15d as well as randomly labeled 2Rs15d-IRDye680RD showed rapid tumor accumulation and low nonspecific uptake, resulting in high tumor-to-muscle ratios at early time points (respectively 6.6 ± 1.0, 3.4 ± 1.6, and 3.5 ± 0.9 for HER2-postive tumors at 3 h p.i., while <1.0 for HER2-negative tumors at 3 h p.i., p < 0.05). Contrarily, using the randomly labeled 2Rs15d-IRDye800CW, HER2-positive and -negative tumors could only be distinguished after 24 h due to high nonspecific signals. Moreover, both randomly labeled 2Rs15d nanobodies were not only cleared via the kidneys but also partially via the hepatobiliary route. In conclusion, near-infrared fluorescent labeling of nanobodies allows rapid, specific, and high contrast in vivo tumor imaging. Nevertheless, the fluorescent dye as well as the chosen conjugation strategy can affect the nanobodies' properties and consequently have a major impact on their pharmacokinetics.
An experimental model of osteoarthritis; early morphological and biochemical changes (1977)

An experimental model of osteoarthritis resulting from laxity of the joint was induced in eighteen mature dogs (at least two years old) by sectioning the anterior cruciate ligament of the right knee (stifle) with a stab incision, the left knee providing a control. A sham operation was also performed in three other dogs, in which a stab incision was made but the ligament left intact. The dogs were killed at various intervals from one to forty-eight weeks later. Morphological changes in bone, cartilage, synovial membrane and joint capsule were examined in all the joints and biochemical changes in the cartilage of three dogs killed after two, eight, and sixteen weeks. All the changes resulting from the operation progressed with time and became indistinguishable from those found in three dogs with natural osteoarthritis of the knee. There were no changes in the joints which had sham operations. As the time of onset is known, this experimental model in a larger species enables a study to be made of the biochemical as well as the morphological changes in the early stages of osteoarthritis.
Pathophysiology of myocardial reperfusion injury: preconditioning, postconditioning, and translational aspects of protective measures (2011)

Heart diseases due to myocardial ischemia, such as myocardial infarction or ischemic heart failure, are major causes of death in developed countries, and their number is unfortunately still growing. Preliminary exploration into the pathophysiology of ischemia-reperfusion injury, together with the accumulation of clinical evidence, led to the discovery of ischemic preconditioning, which has been the main hypothesis for over three decades for how ischemia-reperfusion injury can be attenuated. The subcellular pathophysiological mechanism of ischemia-reperfusion injury and preconditioning-induced cardioprotection is not well understood, but extensive research into components, including autacoids, ion channels, receptors, subcellular signaling cascades, and mitochondrial modulators, as well as strategies for modulating these components, has made evolutional progress. Owing to the accumulation of both basic and clinical evidence, the idea of ischemic postconditioning with a cardioprotective potential has been discovered and established, making it possible to apply this knowledge in the clinical setting after ischemia-reperfusion insult. Another a great outcome has been the launch of translational studies that apply basic findings for manipulating ischemia-reperfusion injury into practical clinical treatments against ischemic heart diseases. In this review, we discuss the current findings regarding the fundamental pathophysiological mechanisms of ischemia-reperfusion injury, the associated protective mechanisms of ischemic pre- and postconditioning, and the potential seeds for molecular, pharmacological, or mechanical treatments against ischemia-reperfusion injury, as well as subsequent adverse outcomes by modulation of subcellular signaling mechanisms (especially mitochondrial function). We also review emerging translational clinical trials and the subsistent clinical comorbidities that need to be overcome to make these trials applicable in clinical medicine.
Binding of cholesterol by sulfhydryl-activated cytolysins (1980)

The binding of cholesterol by pneumolysin, alveolysin, and streptolysin O has been demonstrated. The properties of the cytolysin-cholesterol interaction parallel those of cytolysin-erythrocyte interaction in that the reaction is rapid, temperature independent, decreased at elevated pH, and shows the same specificity with respect to other related sterols. However, oxidized or p-hydroxymercuribenzoate-treated thoxin showed no decrease in cholesterol-binding activity, whereas the ability of cytolysin to bind to erythrocytes was modified by such treatment.
Phosphoinositide 3-kinase inhibition in cancer treatment (2001)

Over the past ten years, our knowledge of the integral role that the phospho-inositide 3-kinases (PI3Ks) and their 3'-phosphorylated lipid products (3'-phosphorylated phosphoinositides; 3P-PIs) play in the mediation of signal transduction, cytoskeletal rearrangements and membrane trafficking has expanded considerably. They are now known to be involved in the regulation of cell growth, differentiation, mobility, proliferation and survival and hence they have become a potential target for the control of the growth and spread of cancer cells. More recently, the correlation of the multiplicity of isomers (both catalytic and regulatory) within the different classes of the PI3Ks with their functional relevance has become possible. This, combined with our further understanding of the protein recognition patterns for their different 3P-PIs and the newly-described pathways in the control of the levels of these by dephosphorylation, has provided new aspects and areas for interference in these multiple PI3K signalling pathways. However, in the search for effective, non-toxic, drugs for use in the treatment of cancers, these individual targets for PI3K inhibition need to be further correlated with the specific in vivo effects on cell survival, invasivity and metastatic potential. Here, the range of PI3K inhibition targets are discussed in the light of recent experimental findings, with a view to the exploitation of their specificities in new approaches to effective cancer treatments based on PI3K activity inhibition.
A study on combustion gas toxicity of polymeric materials using FTIR gas analysis (2005)

When polymeric materials are exposed to fire condition, a lot of heat and toxic gases evolved and cause damage to property and human being. Especially toxic gases are major hazard to life safety. This study FTIR(Fourier Transform Infrared) spectrometer analysis was performaed to etermine the gas analysis and the concentration of gases evolved from PVC, FRP, SMC and Ureathane foam using ASTM E 1678 fire model. And FED toxicity index calculated from FTIR data also presented. By the comparison of animal test adopted in KS F 2271 and FTIR gas analysis method, FTIR gas analysis method can replace current animal toxicity test and produce precise and quantitative combustion gas data.