gebhart/patrepeval huggingface dataset:
Mechanism of action of 2,5-anhydro-D-mannitol in hepatocytes. Effects of phosphorylated metabolites on enzymes of carbohydrate metabolism. (1984)

Isolated rat hepatocytes convert 2,5-anhydromannitol to 2,5-anhydromannitol-1-P and 2,5-anhydromannitol-1,6-P2. Cellular concentrations of the monophosphate and bisphosphate are proportional to the concentration of 2,5-anhydromannitol and are decreased by gluconeogenic substrates but not by glucose. Rat liver phosphofructokinase-1 phosphorylates 2,5-anhydromannitol-1-P; the rate is less than that for fructose-6-P but is stimulated by fructose-2,6-P2. At 1 mM fructose-6-P, bisphosphate compounds activate rat liver phosphofructokinase-1 in the following order of effectiveness: fructose-2,6-P2 much greater than 2,5-anhydromannitol-1,6-P2 greater than fructose-1,6-P2 greater than 2,5-anhydroglucitol-1,6-P2. High concentrations of fructose-1,6-P2 or 2,5-anhydromannitol-1,6-P2 inhibit phosphofructokinase-1. Rat liver fructose 1,6-bisphosphatase is inhibited competitively by 2,5-anhydromannitol-1,6-P2 and noncompetitively by 2,5-anhydroglucitol-1,6-P2. The AMP inhibition of fructose 1,6-bisphosphatase is potentiated by 2,5-anhydroglucitol-1,6-P2 but not by 2,5-anhydromannitol-1,6-P2. Rat liver pyruvate kinase is stimulated by micromolar concentrations of 2,5-anhydromannitol-1,6-P2; the maximal activation is the same as for fructose-1,6-P2. 2,5-Anhydroglucitol-1,6-P2 is a weak activator. 2,5-Anhydromannitol-1-P stimulates pyruvate kinase more effectively than fructose-1-P. Effects of glucagon on pyruvate kinase are not altered by prior treatment of hepatocytes with 2,5-anhydromannitol. Pyruvate kinase from glucagon-treated hepatocytes has the same activity as the control pyruvate kinase at saturating concentrations of 2,5-anhydromannitol-1,6-P2 but has a decreased affinity for 2,5-anhydromannitol-1,6-P2 and is not stimulated by 2,5-anhydromannitol-1-P. The inhibition of gluconeogenesis and enhancement of glycolysis from gluconeogenic precursors in hepatocytes treated with 2,5-anhydromannitol can be explained by an inhibition of fructose 1,6-bisphosphatase, an activation of pyruvate kinase, and an abolition of the influence of phosphorylation on pyruvate kinase.
Short‐term muscle atrophy caused by botulinum toxin‐A local injection impairs fracture healing in the rat femur (2011)

Damaged bone is sensitive to mechanical stimulation throughout the remodeling phase of bone healing. Muscle damage and muscular atrophy associated with open fractures and subsequent fixation are not beneficial to maintaining optimum conditions for mechanical stability. The aim of this study was to investigate whether local muscle atrophy and dysfunction affect fracture healing in a rat femur fracture model. We combined the rat model of a short period atrophy of the quadriceps with femur fracture. Forty-four-month-old male Wistar rats were adopted for this study. Two units of botulinum toxin-A (BXTA) were administered locally into the right side of the quadriceps of each rat, while the same dose of saline was injected into the contralateral quadriceps. After BXTA had been fully absorbed by the quadriceps, osteotomy was performed in both femurs with intramedullary fixation. Gross observation and weighing of muscle tissue, X-ray analysis, callus histology, and bone biomechanical testing were performed at different time points up to 8 weeks post-surgery. Local injection of BXTA led to a significant decrease in the volume and weight of the quadriceps compared to the control side. At the eighth week, the left side femurs of the saline-injected quadriceps almost reached bony union, and fibrous calluses were completely calcified into woven bone. However, a gap was still visible in the BXTA-treated side on X-ray images. As showed by bone histology, there were no mature osseous calluses or woven bone on the BXTA-treated side, but a resorption pattern was evident. Biomechanical testing indicated that the femurs of the BXTA-treated side exhibited inferior mechanical properties compared with the control side. The inferior outcome following BXTA injection, compared with saline injection, in terms of callus resistance may be the consequence of unexpected load and mechanical unsteadiness caused by muscle atrophy and dysfunction.
Cholecystokinin cholescintigraphic findings in the cystic duct syndrome. (1985)

Fourteen patients with a cystic duct syndrome (CDS) underwent cholecystokinin (CCK) cholescintigraphy. All patients presented with persistent postprandial right upper quadrant pain and biliary colic. None of the patients had an abnormal oral cholecystography, gallbladder (GB) ultrasound exam or upper GI series. Each patient (NPO after 12 a.m.) received 5 mCi of technetium-99m disofenin. When the GB maximally filled, 0.02 microgram/kg CCK was administered (3 min) intravenously. Background corrected gallbladder ejection fractions (GBEFs) were determined every 5 min X 4 by rationing the pre-CCK GB counts minus post-CCK GB counts to pre-CCK GB counts. GBEFs were: 12% (3 patients), 17% (2), 0%, 1.3%, 3%, 4%, 6%, 11%, 14%, 18.5%, and 22% (1 each). All patients underwent a surgical exploration and all had macro- or microscopically abnormal cystic ducts (five fibrotic, seven elongated and narrow, two kinked) with (12 patients) or without (2 patients) concomitant chronic cholecystitis. No patient with a partially occluded cystic duct with or without concomitant chronic cholecystitis had an ejection fraction that exceeded 22%. In an appropriate clinical setting, a low EF response to CCK should alert the physician to the presence of either chronic acalculous cholecystitis, CDS, or the combination of both.
Comment on “Nuclear Emissions During Self-Nucleated Acoustic Cavitation” (2006)

In a recent Letter to PRL, Taleyarkhan and coauthors claim to observe DD fusion produced by acoustic cavitation. Among other evidence, they provide a proton recoil spectrum that they interpret as arising from 2.45 MeV DD fusion neutrons. My analysis concludes the spectrum is inconsistent with 2.45 MeV neutrons, cosmic background, or a PuBe source, but it is consistent with a Cf-252 source.
Formation of polymer crystals during polymerisation (1971)

Abstract The structures of the polymers obtained in various types of heterogeneous polymerisations have been studied together with the polymerisation kinetics. Examples of these are: fibres of polymethylene and polyethylene; nylon spherulites produced in the polymerisation of lactams; and extended chain crystals of polyoxyethylene. Solid‐state polymerisation is briefly discussed.
Magnetic Properties of Chemical Vapour Deposited Cobalt Dope Gamma Iron Oxide Thin Films (1992)

Magnetic properties of chemical vapour deposited (CVD) Fe 3 O 4 and γ-Fe 2 O 3 obtained by co-pyrolysis of ferric and cobaltus acetyl acetonate complexes are described. Saturation magnetization, remanent magnetization and coercivity value of 3.7 kG, 2.2 kG and 820 Oe respectively have been obtained for Co-γ Fe 2 O 3 films. Chemically vapour deposited Co-Fe 3 O 4 films are laterally inhomogeneous with only a fraction of Co 2+ ions at octahedral sites (B sites) of spinnel ferrite and excess Co 2+ ions distributed in the interstitial matrix. Oxidation conversion to γ-Fe 2 O 3 phase at temperatures above 350°C lead to Co 2+ ion diffusion to B sites with activation energy of 0.27 eV. Consequent increase in magneto-crystalline anisotropy results in considerable enhancement in coercivity.
Uses of sodium fluoride varnish in dental practice. (2008)

Fluoride varnish is developed to prolong the contact time between fluoride and tooth surface, so that the tooth becomes more resistant to caries attack. The active ingredient of fluoride varnish is usually 5% sodium fluoride, (22,600 ppm fluoride). Studies have found that fairly insoluble globules of calcium fluoride-like material formed on the tooth surface after topical fluoride application. These globules act as a reservoir of fluoride in the mouth for a prolonged period of time. Systematic reviews corroborate evidence for the efficacy of fluoride varnish in the prevention of dental caries. Sodium fluoride varnish is used to prevent caries development, arrest early enamel and even soft dentine caries through promotion of remineralization of carious tooth substance. It is also used to treat tooth hypersensitivity. Some use it as a provisional luting agent by itself or combined with other provisional luting agents for cementing provisional crowns. Fluoride varnish has recently gained much attention in dentistry because it is quick and easy to apply. It sets rapidly on teeth, and gagging and swallowing is unusual. Side-effects or complications of its use are rare. Studies show that fluoride varnish is safe for young children and the risk of dental fluorosis is minimal. The simplicity of its application makes it very suitable and practical for use in dental clinics and outreach dental services, especially in young children and in other special needs groups.
Photoregulation of Cellular Morphology during Complementary Chromatic Adaptation Requires Sensor-Kinase-Class Protein RcaE in <i>Fremyella diplosiphon</i> (2008)

We used wild-type UTEX481; SF33, a shortened-filament mutant strain that shows normal complementary chromatic adaptation pigmentation responses; and FdBk14, an RcaE-deficient strain that lacks light-dependent pigmentation responses, to investigate the molecular basis of the photoregulation of cellular morphology in the cyanobacterium Fremyella diplosiphon. Detailed microscopic and biochemical analyses indicate that RcaE is required for the photoregulation of cell and filament morphologies of F. diplosiphon in response to red and green light.
Role of stearoyl-coenzyme A desaturase in regulating lipid metabolism (2008)

Recent studies in humans and animal models have highlighted that modulation of stearoyl-coenzyme A desaturase 1 activity by dietary intervention or genetic manipulation strongly influences several facets of energy metabolism to affect susceptibility to obesity, insulin resistance, diabetes and hyperlipidemia.
Cellular trafficking determines the exon skipping activity of Pip6a-PMO in mdx skeletal and cardiac muscle cells (2013)

Cell-penetrating peptide-mediated delivery of phosphorodiamidate morpholino oligomers (PMOs) has shown great promise for exon-skipping therapy of Duchenne Muscular Dystrophy (DMD). Pip6a-PMO, a recently developed conjugate, is particularly efficient in a murine DMD model, although mechanisms responsible for its increased biological activity have not been studied. Here, we evaluate the cellular trafficking and the biological activity of Pip6a-PMO in skeletal muscle cells and primary cardiomyocytes. Our results indicate that Pip6a-PMO is taken up in the skeletal muscle cells by an energy- and caveolae-mediated endocytosis. Interestingly, its cellular distribution is different in undifferentiated and differentiated skeletal muscle cells (vesicular versus nuclear). Likewise, Pip6a-PMO mainly accumulates in cytoplasmic vesicles in primary cardiomyocytes, in which clathrin-mediated endocytosis seems to be the pre-dominant uptake pathway. These differences in cellular trafficking correspond well with the exon-skipping data, with higher activity in myotubes than in myoblasts or cardiomyocytes. These differences in cellular trafficking thus provide a possible mechanistic explanation for the variations in exon-skipping activity and restoration of dystrophin protein in heart muscle compared with skeletal muscle tissues in DMD models. Overall, Pip6a-PMO appears as the most efficient conjugate to date (low nanomolar EC50), even if limitations remain from endosomal escape.
Lower Critical Solution Temperature (LCST) Phase Behavior of Poly(ethylene oxide) in Ionic Liquids (2010)

We describe the LCST-type phase behavior of poly(ethylene oxide) (PEO) (M = 5000 and 20000) dissolved in 1,3-dialkylimidazolium tetrafluoroborate ionic liquids. The phase transition temperatures were identified using cloud point measurements. In these PEO/ionic liquid systems, liquid−liquid phase separation is observed in the temperature range from 130 to 170 °C. We report unusual temperature−composition phase diagrams in which the cloud point curves are strongly asymmetric, with the critical composition (wc) shifted to high concentrations of PEO. The critical temperature (Tc) and the critical composition (wc) of these systems are not a strong function of the molecular weight of PEO. In addition, the values of the LCST increase as the length of the alkyl chain in the imidazolium cation increases. By using ionic liquid blends as solvents, the LCSTs can be tuned by varying the mixing ratio of two ionic liquids.
Hot Electron Reliability and ESD Latent Damage (1988)

The authors present a study of the impact of noncatastrophic electrostatic-discharge (ESD) stress on hot-electron reliability as well as the effect of hot electron (HE) injection on ESD protection threshold. It is found that there is a factor of two to four deterioration in hot-electron reliability after low-level ESD stress. These two effects can be viewed as similar in that HE is a low-current long-time process and ESD is a high-current short-time process. Therefore the techniques for characterizing hot-electron degradation have been applied to quantify damage due to ESD stress. This technique shows electrical evidence of current filaments during an ESD. >
El TJUE confirma que los jueces españoles deben aplicar la limitación de los intereses de demora de los préstamos hipotecarios (2015)

La sentencia del TJUE Unicaja Banco y Caixabank, dictada el pasado 21 de enero de
2015, ha declarado que la disp. trans. 2.a Ley 1/2013, en la que se regula el
procedimiento para aplicar la limitacion de los intereses de demora de hipotecas constituidas
sobre vivienda habitual a las hipotecas constituidas antes de 15 de mayo de 2013 es una
disposicion de aplicacion obligatoria que no se opone al Derecho de la UE.
Force sensing and control for a surgical robot (2003)

The authors describe the use of force feedback in a surgical robot system (ROBODOC). The application initially being addressed is total hip replacement (THR) surgery, where the robot must prepare a cavity in the femur for an artificial implant. In this system, force feedback is used to provide safety, tactile search capabilities, and an improved man-machine interface. Output of the force sensor is monitored by a safety processor, which initiates corrective action if any of several application-defined thresholds are exceeded. The robot is able to locate objects using guarded moves and force control (ball-in-cone strategy). In addition, the force control algorithm provides an intuitive man-machine interface which allows the surgeon to guide the robot by leading its tool to the desired location. An application of force control currently under development is described, where the force feedback is used to modify the cutter feed rate (force controlled velocity).< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Exploring the Coordination of Cyclic Selenoureas to Gold(I) (2014)

NHC-derived selenoureas, which are useful for the quantification of NHC electronic properties, are deployed as ligands for Au(I). Surprisingly, while some compounds led to the expected [AuCl(SeUr)] species, selenoureas derived from more π-accepting NHCs unexpectedly furnished crystals of the corresponding [Au(SeUr)2][AuCl2] species, in which ligand rearrangement had occurred.
Terahertz emission of atoms driven by ultrashort laser pulses (2009)

Terahertz (THz) emissions of an isolated atom in an ultrashort (100 fs) laser field are simulated by solving the time-dependent Schr\"odinger equation. From numerical calculations with one- and three-dimensional hydrogen atom models and a short-range shallow potential model, it can be concluded that continuum THz emissions occur more readily following transitions involving intermediate states above rather than those well below the ionization threshold of the system. Line-shaped THz emissions from transitions between high-lying Rydberg states are also found. The models are also used to describe the observed enhanced terahertz emissions with a superposed second-order harmonic laser field or a spatially constant electric field. The dependence of the THz field strength on the intensities of the fundamental laser field and the superposed field is also examined. Strong field approximation is extended to analyze the general features of THz emissions resulting from continuum free-free transitions of an electron in strong laser fields. These calculations contribute to an understanding of the THz emission processes when strong laser fields interact with atomic and molecular systems that have larger ionization potentials and where multiphoton processes are involved in order to generate THz emissions effectively.
When good protections go bad: Exploiting anti-DoS measures to accelerate rowhammer attacks (2017)

The rowhammer vulnerability, where repeated accesses to a DRAM row can speed the discharge of neighboring bits, has emerged as a significant security concern in the computing industry. To address the problem, computer and software vendors have: i) doubled DRAM refresh rates, ii) restricted access to virtual-to-physical page mappings, and iii) disabled access to cache-flush operations in sandboxed environments. While recent efforts have shown how to overcome each of these protections individually, machines today are protected from rowhammer attacks if they employ all three of these protections simultaneously. In this paper, we demonstrate the first rowhammer attack that overcomes all three of these protections when used in tandem. Our attack is a virtual-memory based cache-flush free attack that is sufficiently fast to rowhammer with double rate refresh. The most astonishing aspect of our attack is that it is enabled by the recently introduced Cache Allocation Technology, a mechanism designed in part to protect virtual machines from inter-VM denial-of-service attacks. The subtext of this paper asks the question: “Is there any hope for system security, when the protections for one attack enable yet another?” We claim that the solution to this conundrum lies in the approach taken to protecting systems. Adopting a subtractive approach to secure systems, in contrast to additive measures, could go a long way toward building provably secure systems.
Double-passed arrayed waveguide grating for 500-GHz pulse burst generation (2002)

500-GHz repetition rate pulse bursts on multiple wavelength shifted channels are generated via femtosecond readout of an arrayed waveguide grating (AWG). These bursts are combined onto a single channel by double-passing the AWG, resulting in a substantially increased number of output pulses.
FIP: A novel approach to vaccination (2004)

Feline infectious peritonitis (FIP) is a fatal disease of cats. Early attempts at vaccination have been unsuccessful, some even serving to exacerbate the disease through antibody-dependent enhancement. Replication-incompetent feline foamy virus (FFV) transducing vectors are being developed as potential vaccine agents, into which immunogenic fragments of feline coronavirus (FCoV) proteins will be inserted. To use a recombinant viral vector to express FCoV proteins, the agent chosen should be apathogenic and replication incompetent within the host following gene delivery. Spumaviruses confer several advantages over the more traditionally explored retroviral vectors. Stable helper cell line clones have been established by transfection of CRFK cells with FFV tas and assessed using beta-galactosidase assays, PCR, immunofluorescence and western blotting. The generation of infectious virions using these cell lines has been investigated using tas-deleted FFV vectors containing the enhanced green fluorescent protein (eGFP) cassette.
Interactions defining the specificity between fungal xylanases and the xylanase-inhibiting protein XIP-I from wheat (2002)

We previously reported on the xylanase-inhibiting protein I (XIP-I) from wheat [McLauchlan, Garcia-Conesa, Williamson, Roza, Ravestein and Maat (1999), Biochem. J. 338, 441-446]. In the present study, we show that XIP-I inhibits family-10 and -11 fungal xylanases. The K(i) values for fungal xylanases ranged from 3.4 to 610 nM, but bacterial family-10 and -11 xylanases were not inhibited. Unlike many glycosidase inhibitors, XIP-I was not a slow-binding inhibitor of the Aspergillus niger xylanase. Isothermal titration calorimetry of the XIP-I-A. niger xylanase complex showed the formation of a stoichiometric (1:1) complex with a heat capacity change of -1.38 kJ x mol(-1) x K(-1), leading to a predicted buried surface area of approx. 2200+/-500 A(2) at the complex interface. For this complex with A. niger xylanase (K(i)=320 nM at pH 5.5), titration curves indicated that an observable interaction occurred at pH 4-7, and this was consistent with the pH profile of inhibition of activity. In contrast, the stronger complex between A. nidulans xylanase and XIP-I (K(i)=9 nM) led to an observable interaction across the entire pH range tested (3-9). Using surface plasmon resonance, we show that the differences in the binding affinity of XIP-I for A. niger and A. nidulans xylanase are due to a 200-fold lower dissociation rate k(off) for the latter, with only a small difference in association rate k(on).
The Audion as a Circuit Element (1919)

Synopsis.---The functional equations for the three-element audion are used to deduce the actions taking place in any circuit containing the audion. The equations for small variations in the general network containing audions are developed and simple equivalent circuits to replace the tube are shown. Next the effects of the capacities between elements are worked out and also some examples of amplifiers and oscillation generators.
Formation of Dihydropyridone- and Pyridone-Based Peptide Analogs through Aza-Annulation of β-Enamino Ester and Amide Substrates with α-Amido Acrylate Derivatives (1997)

The aza-annulation of β-enamino ester and amide substrates with the mixed anhydride of 2-acetamidoacrylic acid was used for the efficient construction of highly substituted α-acetamido δ-lactam products. With the α-acetamido substituent, lactam functionality, and γ-carboxylate group, these δ-lactam products represent an interesting class of conformationally restricted dipeptide analogs. The framework of this lactam hub is structurally related to that of an α-amino acid coupled with a β-amino acid. When α-amino esters derived from naturally occurring amino acids were used in the enamine formation step, subsequent aza-annulation led to branched peptide surrogates with two C-termini that extended from a common N-terminus. Oxidation of the aza-annulation products resulted in the generation of a planar system with peptide functionality radiating from the 1, 3, and 5 positions of the pyridone hub. Alternatively, pyridone products could be formed directly from the enamino amides by reaction with 2-phenyl-4-(ethoxymethylene)oxazolone. Subsequent hydrolysis of the acetamido and ester substituents of the N-benzylpyridones was selectively performed to access unique β-amino acid products. Formation of the mixed anhydride of this acid, followed by amide bond formation with the ester of an α-amino acid, allowed extension of the peptide chain from the dihydropyridone structure.
Label-free monitoring of interaction between DNA and oxaliplatin in aqueous solution by terahertz spectroscopy (2012)

We demonstrated the feasibility of applying terahertz time-domain spectroscopy (THz-TDS) to monitor the molecular reactions in aqueous solutions of anticancer drug oxaliplatin with λ-DNA and macrophages DNA. The reaction time dependent refractive index and absorption coefficient were extracted and analyzed. The reaction half-decaying time of about 4.0 h for λ-DNA and 12.9 h for M-DNA was established. The results suggest that the THz-TDS detection could be an effective label-free technique to sense the molecular reaction in aqueous solutions and could be very useful in biology, medicine, and pharmacy industry.