gebhart/patrepeval huggingface dataset:
Fucosylation of Cripto Is Required for Its Ability to Facilitate Nodal Signaling (2001)

O-linked fucose modification is rare and has been shown to occur almost exclusively within epidermal growth factor (EGF)-like modules. We have found that the EGF-CFC family member human Cripto-1 (CR) is modified with fucose and through a combination of peptide mapping, mass spectrometry, and sequence analysis localized the site of attachment to Thr-88. The identification of a fucose modification on human CR within its EGF-like domain and the presence of a consensus fucosylation site within all EGF-CFC family members suggest that this is a biologically important modification in CR, which functionally distinguishes it from the EGF ligands that bind the type 1 erbB growth factor receptors. A single CR point mutation, Thr-88 --> Ala, results in a form of the protein that is not fucosylated and has substantially weaker activity in cell-based CR/Nodal signaling assays, indicating that fucosylation is functionally important for CR to facilitate Nodal signaling.
An architecture for an extensible 3D interface toolkit (1994)

This paper presents the architecture for an extensible toolkit used in construction and rapid prototyping of three dimensional interfaces, interactive illustrations, and three dimensional widgets. The toolkit provides methods for the direct manipulation of 3D primitives which can be linked together through a visual programming language to create complex constrained behavior. Features of the toolkit include the ability to visually build, encapsulate, and parameterize complex models, and impose limits on the models. The toolkit's constraint resolution technique is based on a dynamic object model similar to those in prototype delegation object systems. The toolkit has been used to rapidly prototype tools for mechanical modelling, scientific visualization, construct 3D widgets, and build mathematical illustrations.
Variational transition state theory (1990)

In recent years our research group has made a systematic effort to study the validity of transition state theory (TST). We have found that the conventional theory is sometimes remarkably accurate, but in many other cases it leads to large errors. Fortunately we have found that a much more reliable theory that has many of the advantages of conventional TST can also be formulated, and it can be applied to practical problems with an effort that is much closer to that required for conventional transition state theory than to that required for quantal dynamics calculations. The two most important features in the improved approach to transition state theory state theory are the variational determination of the transition state and the incorporation of tunneling contributions by multidimensional semiclassical approximations. 13 refs.
Association of IL‐37 gene polymorphisms with susceptibility to tuberculosis in Saudi subjects (2016)

Tuberculosis (TB) is one of the most common infectious diseases worldwide. IL-37, a novel member of the IL-1 family, has anti-inflammatory activity. Various cytokine genes polymorphisms are reportedly associated with susceptibility to TB infection. However, an association between genetic variations in the IL-37 gene and susceptibility to TB infection has not been investigated. The aim of this case-control study was therefore to identify such an association in Saudi subjects, in which five single-nucleotide polymorphisms (SNPs) in the IL-37 gene were assessed. Serum concentrations of IL-37 were evaluated using ELISA, and genetic variants genotyped by multiplex PCR and ligase detection reaction. It was found that the C/C genotype of rs2723176 (-6962 A/C) occurs significantly more frequently in patients with active TB and that the C allele of this SNP is associated with TB. In addition, the C allele of rs2723176 SNP was associated with high circulating concentrations of IL-37. However, the genotype and allele frequency of the other four SNPs (rs3811046, rs3811047, rs2723186 and rs2723187) were not significantly associated with TB infection. In conclusion, the present data suggest that rs2723176 SNP of IL-37 is involved in the development of TB infection. Furthermore, high circulating concentrations of IL-37 may have a negative effect on protective immunity against TB infection.
Cell-specific enhancers in the rat exocrine pancreas. (1986)

Pancreatic amylase, chymotrypsin B, and trypsin I genes are specifically expressed in the exocrine pancreas. The 5'-flanking regions of these genes direct preferential expression of a linked reporter function (chloramphenicol acetyltransferase) in the pancreatic exocrine cell line AR4-2J. The sequences upstream of the amylase and chymotrypsin genes that are required for this cell specific activity possess the characteristics of transcriptional enhancers. We have mapped the regions responsible for enhancer activity by deletion analysis. Modification of specific nucleotide sequences within these regions can alter or eliminate enhancer function. Comparison of the 5'-flanking regions of nine genes expressed in the exocrine pancreas identifies a family of short related sequences. These sequences are located within the enhancer regions that we have mapped and may play a role in the regulation of the expression of pancreatic exocrine-specific genes.
Effects of Cooling Rate and Supercooling Degree on Solidified Structures of Al&ndash;Mn, Al&ndash;Cr and Al&ndash;Zr Alloys in Rapid Solidification (1971)

Effects of supercooling and cooling rate on the solidified structures of Al–Mn, Al–Cr and Al–Zr alloys, which had a strong tendency to form metastable solid solution by rapid cooling of the molten alloys, were investigated by means of thermal analysis and microscopic observation. The results obtained were as follows:(1) The square of the degree of supercooling was proportional to the cooling rate on the solidification of the alloys having a solute concentration up to the maximum solid solubility limit at equilibrium (Ce). At solute concentrations higher than Ce, this relation was satisfied under the conditions that the primary crystals were a super-saturated solid solution.(2) The minimum cooling rate to form the super-saturated solid solutions containing more solute atoms than Ce was 115, 175 and 190°C/sec for Al–Mn, Al–Cr and Al–Zr respectively.(3) Metastable phase diagrams were proposed under varying conditions of composition, temperature and cooling rate in the Al–Mn, Al–Cr and Al–Zr systems.
On-line probabilistic classification with particle filters (2002)

We apply particle filters to the problem of on-line classification with possibly overlapping classes. This allows us to compute the probabilities of class membership as the classes evolve. Although we adopt neural network classifiers, the work can be extended to any other parametric classification scheme. We demonstrate our methodology on a simple example and on the problem of fault detection of dynamically operated marine diesel engines.
PKR-Dependent Mechanisms of Gene Expression from a Subgenomic Hepatitis C Virus Clone (2002)

Studies on hepatitis C virus (HCV) replication have been greatly advanced by the development of cell culture models for HCV known as replicon systems. The prototype replicon consists of a subgenomic HCV RNA in which the HCV structural region is replaced by the neomycin phosphotransferase II (NPTII) gene, and translation of the HCV proteins NS3 to NS5 is directed by the encephalomyocarditis virus (EMCV) internal ribosome entry site (IRES). The interferon (IFN)-inducible protein kinase PKR plays an important role in cell defense against virus infection by impairing protein synthesis as a result of eIF-2alpha phosphorylation. Here, we show that expression of the viral nonstructural (NS) and PKR proteins and eIF-2alpha phosphorylation are all variably regulated in proliferating replicon Huh7 cells. In proliferating cells, induction of PKR protein by IFN-alpha is inversely proportional to viral RNA replication and NS protein expression, whereas eIF-2alpha phosphorylation is induced by IFN-alpha in proliferating but not in serum-starved replicon cells. The role of PKR and eIF-2alpha phosphorylation was further addressed in transient-expression assays in Huh7 cells. These experiments demonstrated that activation of PKR results in the inhibition of EMCV IRES-driven NS protein synthesis from the subgenomic viral clone through mechanisms that are independent of eIF-2alpha phosphorylation. Unlike NS proteins, HCV IRES-driven NPTII protein synthesis from the subgenomic clone was resistant to PKR activation. Interestingly, activation of PKR could induce HCV IRES-dependent mRNA translation from dicistronic constructs, but this stimulatory effect was mitigated by the presence of the viral 3' untranslated region. Thus, PKR may assume multiple roles in modulating HCV replication and protein synthesis, and tight control of PKR activity may play an important role in maintaining virus replication and allowing infection to evade the host's IFN system.
A NEW MEDIUM FOR POLLEN GERMINATION IN VITRO (1982)

Poly-ethylene glycol (PEG)-400 was found to be superior to sucrose as the major component in media for the germination of Petunia hybrida pollen. PEG promotes pollen tube growth considerably more than sucrose. Pollen tubes grown on PEG resemble the in vivo tubes much more than those grown on sucrose. The respiration rate of pollen germinating on sucrose is 33% higher than on PEG; the extra energy produced is clearly not related to tube growth.
Advanced core/multishell germanium/silicon nanowire heterostructures: Morphology and transport (2011)

A precise level of control over morphology and transport in germanium/silicon core/multishell semiconductor nanowires is attained by interface engineering. Epitaxial in situ growth of such advanced heterostructures is achieved, enabling smooth and crystalline shell quality without ex situ thermal or chemical treatment. Transport simulation predicts such heterostructures with engineered energy band-edges will exhibit enhanced on-currents and transconductances over traditional device designs. Based on this synthesis approach, a 2× improvement in experimental hole mobility, transconductance, and on-currents is demonstrated for heterostructures with smooth surface morphologies compared to those with rough surface morphologies and record normalized on-currents for p-type field effect transistors are achieved.
A metal oxide adhesion layer prepared with water based coating solution for wet Cu metallization of glass interposer (2015)

Inorganic interposers made of glass are attractive for advanced high frequency applications and ultra- fine line patterning technology. Because glass combines a couple of benefits like large form factor, good coefficient of thermal expansion (CTE) matching to silicon, smooth surface and a low dielectric constant and loss tangent. Recently much progress has been made with respect to glass electrical and physical properties. This allows for handling of thin glass sheets down to 100 μm in a typical PCB panel format. Also advances have been made in the area of laser drilling allowing aspect ratio up to 1:10 for 25 μm diameter of through glass via (TGV). Another major challenge is the cost competitive and reliable metallization of smooth glass, a critical prerequisite for the use of glass substrates in the electronic packaging market. Plated copper does not adhere directly to glass. Sputtering technology typically also requires a 50 nm thick adhesion promoting metal layer (like Ti) before copper can be seeded. This metal layer could not be etched together with the copper and needs to be removed between traces by etching in an additional step. A volatile flammable solvent based metal oxide precursor coating solution has been used to make an adhesive metal oxide layer by a modified sol-gel process. To prevent potential safety issue for mass production water based metal oxide precursor coating solution so called VitroCoat GI W has been developed. The VitroCoat GI W solution can be dip-coated on flat glass surface and TGVs followed by sintering to form an ultrathin metal oxide adhesion layer (about 10nm). The thin adhesive layer enables electroless and electrolytic copper plating directly onto glass substrates without changing any of the glass properties or impacting high frequency performance. The thin metal oxide adhesive layer is non-conductive and can be easily removed from the area between circuit traces. This paper will focus on the coating uniformity and capability of VitroCoat GI W on flat glass surface and TGVs and the adhesion of wet chemical metallization on glass interposer. This adhesion layer can be used for copper fine line patterning on glass and radio frequency (RF) device fabrication.
Communication: Tolman length and rigidity constants of water and their role in nucleation (2015)

A proper understanding of nucleation is crucial in several natural and industrial processes. However, accurate quantitative predictions of this phenomenon have not been possible. The most popular tool for calculating nucleation rates, classical nucleation theory (CNT), deviates by orders of magnitude from experiments for most substances. We investigate whether part of this discrepancy can be accounted for by the curvature-dependence of the surface tension. To that end, we evaluate the leading order corrections for water, the Tolman length and the rigidity constants, using square gradient theory coupled with the accurate cubic plus association equation of state. The Helfrich expansion is then used to incorporate them into the CNT-framework. For water condensation, the modified framework successfully corrects the erroneous temperature dependence of the nucleation rates given by the classical theory and reproduces experimental nucleation rates.
Influence of Ni doping on the electronic structure of<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="normal">Ni</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:mi mathvariant="normal">Mn</mml:mi><mml:mi mathvariant="normal">Ga</mml:mi></mml:mrow></mml:math> (2005)

The modifications in the electronic structure of ${\mathrm{Ni}}_{2+x}{\mathrm{Mn}}_{1\ensuremath{-}x}\mathrm{Ga}$ by Ni doping have been studied using the full potential linearized augmented plane wave method and ultraviolet photoemission spectroscopy. Ni $3d$-related electron states appear due to formation of Ni clusters. We show the possibility of changing the minority-spin density of states (DOS) with Ni doping, while the majority-spin DOS remains almost unchanged. The total magnetic moment decreases with excess Ni. The total energy calculations corroborate the experimentally reported changes in the Curie temperature and the martensitic transition temperature with $x$.
ZnO – nanostructures, defects, and devices (2007)

ZnO has received much attention over the past few years because it has a wide range of properties that depend on doping, including a range of conductivity from metallic to insulating (including n-type and p-type conductivity), high transparency, piezoelectricity, wide-bandgap semiconductivity, room-temperature ferromagnetism, and huge magneto-optic and chemical-sensing effects. Without much effort, it can be grown in many different nanoscale forms, thus allowing various novel devices to be achieved. We review recent studies of ZnO nanostructures, fabrication, novel device applications, and its potential as an electron-acceptor material in hybrid solar cells. Control of its rich defect chemistry, which is critical for controlling properties but has not been widely addressed in the context of novel applications, is also discussed.
Synthesis and Chemistry of SF<sub>5</sub>Cl (1964)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSynthesis and Chemistry of SF5ClC. W. Tullock, D. D. Coffman, and E. L. MuettertiesCite this: J. Am. Chem. Soc. 1964, 86, 3, 357–361Publication Date (Print):February 1, 1964Publication History Published online1 May 2002Published inissue 1 February 1964https://pubs.acs.org/doi/10.1021/ja01057a013https://doi.org/10.1021/ja01057a013research-articleACS PublicationsRequest reuse permissionsArticle Views972Altmetric-Citations116LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Intelligent Design and Manufacturing (1992)

From the Publisher:
Focuses on design and manufacturing and a variety of issues pertinent to successful techniques involving concurrent engineering. Considers product design and manufacturing constraints simultaneously, emphasizing the consideration of every element of the product's life cycle from concept through disposal. Examines such areas as quality, cost, scheduling and user needs. Design and manufacturing problems are thoroughly discussed and solutions are given by using numerous modern applications and implements, including basic artificial intelligence tools.
Simultaneous monitoring of multiple urinary cytokines may predict renal and patient outcome in ischemic AKI (2010)

Acute kidney injury (AKI) is a common disorder associated with high morbidity and mortality rates. Ischemia is the leading cause of AKI. This is a pilot study investigating the ability of multiple urinary cytokines to predict renal functional outcome and mortality in patients with ischemic AKI. Urine samples were obtained from 45 subjects with ischemic AKI on the day of renal consultation and 3 days later. The urinary concentrations of interleukin (IL)-1beta, IL-6, IL-8, monocyte chemotactic protein (MCP)-1, interferon-inducible protein (IP)-10, regulated on activation, normal T-expressed and secreted (RANTES), transforming growth factor (TGF)-alpha, vascular endothelial growth factor (VEGF), and epidermal growth factor (EGF) were measured simultaneously using a microsphere-based immunofluorescence assay. Urinary cytokine levels (pg/mg urine creatinine), which predict renal functional recovery or no recovery the next day and 7 days and 3 months later, were identified. Increased urinary IP-10 and IL-8 predicted no renal functional recovery the next day. Increased urinary IP-10 and VEGF predicted no renal recovery by 7 days. Increased urinary IP-10 and VEGF predicted no renal recovery by 4 days, whereas increased urinary EGF predicted renal functional recovery at that time. Increased urinary IL-8, MCP-1, IP-10, RANTES, EGF, and VEGF predicted patient's death within 3 months. Our findings suggest that urinary IP-10, IL-8, VEGF, TGF-alpha, and EGF may predict renal functional outcome at various times along the course of ischemic AKI and that urinary IL-8, MCP-1, IP-10, RANTES, EGF, and VEGF may predict mortality of the patients within 3 months.
Near-infrared Absorbing Squarylium Dyes with Linearly Extended π-Conjugated Structure for Dye-sensitized Solar Cell Applications (2011)

A novel class of near-infrared absorbing squarylium sensitizers with linearly extended π-conjugated structures, which were obtained by Pd-catalyzed cross-coupling reactions with stannylcyclobutenediones, has been developed for dye-sensitized solar cells. The cells based on these dyes exhibited a significant spectral response in the near-infrared region over 750 nm in addition to the visible region.
A knowledge representation system for integration of general and case-specific knowledge (2002)

Combining various knowledge types-and reasoning methods-in knowledge-based systems is a challenge to the knowledge representation task. The paper describes an object-oriented, frame-based knowledge representation system aimed at unifying case-specific and general domain knowledge within a single representation system. It is targeted at the representational needs that have emerged from research in knowledge-intensive case-based reasoning, addressing complex problem solving in open and weak theory domains. Emphasis is put on representational expressiveness, on flexible reasoning and control schemes, and on easy inspection of cases and other knowledge objects.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Botulinum Neurotoxin for Pain Management: Insights from Animal Models (2010)

The action of botulinum neurotoxins (BoNTs) at the neuromuscular junction has been extensively investigated and knowledge gained in this field laid the foundation for the use of BoNTs in human pathologies characterized by excessive muscle contractions. Although much more is known about the action of BoNTs on the peripheral system, growing evidence has demonstrated several effects also at the central level. Pain conditions, with special regard to neuropathic and intractable pain, are some of the pathological states that have been recently treated with BoNTs with beneficial effects. The knowledge of the action and potentiality of BoNTs utilization against pain, with emphasis for its possible use in modulation and alleviation of chronic pain, still represents an outstanding challenge for experimental research. This review highlights recent findings on the effects of BoNTs in animal pain models.
Control of Magnetocrystalline Anisotropy by Epitaxial Strain in Double Perovskite<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msub><mml:mi>Sr</mml:mi><mml:mn>2</mml:mn></mml:msub><mml:msub><mml:mi>FeMoO</mml:mi><mml:mn>6</mml:mn></mml:msub></mml:math>Films (2013)

We demonstrate tuning of magnetocrystalline anisotropy in high-quality Sr(2)FeMoO(6) epitaxial films over a range of several thousand Gauss using strain induced by epitaxial growth on substrates of varying lattice constants. Spectroscopic measurements reveal a striking, linear dependence of the out-of-plane anisotropy on the strain-induced tetragonal distortion of the Sr(2)FeMoO(6) lattice. This anisotropy can be tuned from +2000 to -3300 Oe, a range sufficient to rotate the easy axis from in plane to out of plane. Combined with its half-metallicity and high Curie temperature, this result implies a broad range of scientific and technological applications for this novel spintronic material.
Epitope Distribution of Randomly Established Monoclonal Antibodies against Human Type II DNA Topoisomerases (2002)

The epitopes of about 100 monoclonal antibodies against human type II DNA topoisomerase were mapped along the enzyme molecules. Although they were randomly and independently established, epitope sites were unevenly distributed the toward N-terminal or C-terminal region. We suggest that the central catalytic domain is hidden inside the molecule and inaccessible to the antigen recognition sites. Using antibodies, we demonstrate the distinct localization of isoforms of Topo II in cultured cells. Some particularly useful antibodies are listed.
Equation-of-State Measurement of Dense Plasmas Heated With Fast Protons (2008)

Using an ultrafast pulse of mega-electron-volt energy protons accelerated from a laser-irradiated foil, we have heated solid density aluminum plasmas to temperatures in excess of 15 eV. By measuring the temperature and the expansion rate of the heated Al plasma simultaneously and with picosecond time resolution we have found the predictions of the SESAME Livermore equation-of-state (LEOS) tables to be accurate to within 18%, in this dense plasma regime, where there have been few previous experimental measurements.