gebhart/patrepeval huggingface dataset:
Lung-Restricted Macrophage Activation in the Pearl Mouse Model of Hermansky-Pudlak Syndrome (2006)

Pulmonary inflammation, abnormalities in alveolar type II cell and macrophage morphology, and pulmonary fibrosis are features of Hermansky-Pudlak Syndrome (HPS). We used the naturally occurring "pearl" HPS2 mouse model to investigate the mechanisms of lung inflammation observed in HPS. Although baseline bronchoalveolar lavage (BAL) cell counts and differentials were similar in pearl and strain-matched wild-type (WT) mice, elevated levels of proinflammatory (MIP1gamma) and counterregulatory (IL-12p40, soluble TNFr1/2) factors, but not TNF-alpha, were detected in BAL from pearl mice. After intranasal LPS challenge, BAL levels of TNF-alpha, MIP1alpha, KC, and MCP-1 were 2- to 3-fold greater in pearl than WT mice. At baseline, cultured pearl alveolar macrophages (AMs) had markedly increased production of inflammatory cytokines. Furthermore, pearl AMs had exaggerated TNF-alpha responses to TLR4, TLR2, and TLR3 ligands, as well as increased IFN-gamma/LPS-induced NO production. After 24 h in culture, pearl AM LPS responses reverted to WT levels, and pearl AMs were appropriately refractory to continuous LPS exposure. In contrast, cultured pearl peritoneal macrophages and peripheral blood monocytes did not produce TNF-alpha at baseline and had LPS responses which were no different from WT controls. Exposure of WT AMs to heat- and protease-labile components of pearl BAL, but not WT BAL, resulted in robust TNF-alpha secretion. Similar abnormalities were identified in AMs and BAL from another HPS model, pale ear HPS1 mice. We conclude that the lungs of HPS mice exhibit hyperresponsiveness to LPS and constitutive and organ-specific macrophage activation.
Analysis and synthesis of cascaded metasurfaces using wave matrices (2017)

Various matrix representations are used to analyze the propagation of electromagnetic waves through stratified (layered) media or cascaded circuit networks. These include ABCD matrices, scattering matrices, impedance matrices, and hybrid matrices. A less known network representation is the wave matrix. In this paper, a brief review of wave matrices is presented and their relation to other network representations derived. Wave matrices are found for common interfaces such as boundaries between dielectric media, dielectric slabs, as well as electric, magnetic, and magneto-electric sheet boundaries (generalized sheet transition conditions). These results are then used to develop an analytical synthesis approach for cascaded metasurfaces: metasurfaces consisting of a cascade of sheets separated by dielectric spacers. This is in contrast to earlier works which relied on numerical solvers or optimization methods to design such structures. A few design examples are presented to demonstrate the utility of the synthesis approach.
Differentiation of isomeric acyl carnitines using tandem mass spectrometry (1986)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTDifferentiation of isomeric acyl carnitines using tandem mass spectrometrySimon J. Gaskell, Christian. Guenat, David S. Millington, David A. Maltby, and Charles R. RoeCite this: Anal. Chem. 1986, 58, 13, 2801–2805Publication Date (Print):November 1, 1986Publication History Published online1 May 2002Published inissue 1 November 1986https://pubs.acs.org/doi/10.1021/ac00126a048https://doi.org/10.1021/ac00126a048research-articleACS PublicationsRequest reuse permissionsArticle Views255Altmetric-Citations30LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Coronary atherosclerosis in transplanted mouse hearts. II. Importance of humoral immunity. (1994)

Obstructive lesions in arterial vessels of transplanted organs constitute an important factor in the late failure of these organs, especially for the heart. The absence of obstructive lesions in syngeneic donor-recipient combinations, suggests that they depend upon recipient immune responsiveness. It is controversial whether humoral or cellular aspects of the immune response predominate in the process. The present experiments employed hearts transplanted between inbred mice. After brief preoperative immunosuppression of recipients with mAbs to CD4 and CD8 determinants, hearts transplanted between mice incompatible for histocompatibility Ags survived for prolonged periods and most developed typical, obstructive coronary lesions. Our quantitative scoring of vascular changes on tissue sections of excised hearts, grades both their severity and prevalence. Transplants between strains that produced Abs to donor cells (B10.A to B10.BR), developed coronary lesions exceeding those in the reverse combination in which no detectable Ab was formed (B10.BR to B10.A; p < 0.00001), even though their histoincompatibility was similar. Treatment of B10.A recipients of B10.BR hearts with an antiserum against the donor significantly increased coronary lesions (p < 0.0003) in a dose-dependent fashion. Coronary arteries of B10.BR hearts transplanted to C.B-17 SCID mice remained largely free of lesions, whereas transplants to SCID recipients that received continuing injections of an antiserum directed to Ags of the donor developed striking, obstructive coronary lesions. We conclude that humoral immunity can be the prime instigator of atheromatous changes that occur in transplanted hearts.
Conjugation of <i>N</i>-acylated amino sugars to protein by reductive alkylation using sodium cyanoborohydride: application to an azo derivative of α-amanitin (1991)

Reductive alkylation mediated by cyanoborohydride is an attractive approach to the conjugation of small molecules, such as drugs, to proteins. This reaction is specific for protein amino groups and can be conducted under mild conditions with little risk of protein polymerization. However, the lability of the aldehyde function that is needed in such reactions presents a difficulty. We have investigated the use of derivatives of D-galactosamine and D-glucosamine in reductive alkylation, since these sugars contain aldehyde groups that are inherently protected and that may be readily linked to other molecules through their amino groups. The amino groups of these sugars were acylated with N-4-nitro-benzoylglycylglycine. Studies of the reductive coupling of the resultant adducts to bovine serum albumin revealed that conjugation to albumin is strongly dependent on cyanoborohydride, is much faster in the presence of borate, and shows a marked increase in rate between pH 7.0 and 9.0. In the presence of borate, the glucosamine derivative coupled much more rapidly than did the galactosamine derivative. The aryl nitro group of the glucosamine adduct was selectively reduced to an amine, diazotized, and reacted with alpha-amanitin to form an azo compound. This azo derivative was reductively coupled to form conjugates that inhibit calf thymus RNA polymerase II.
Solid solubilities in nickel-based f.c.c. alloys (1985)

The validity of a new method developed recently for the evaluation of solid solubilities of alloys (Morinaga et al. 1985) is confirmed for nickel-based f.c.c. alloys. The method predicts well the phase boundaries between the austenitic γ and the γ' phase in 18 ternary alloys.
An On-Road Investigation of Vehicle Feedback and Its Role in Driver Cognition: Implications for Cognitive Ergonomics (2001)

A proposed feedback model of driving implicates vehicle feedback as an important variable affecting driver cognition. This naturalistic study employs an on-road paradigm to begin investigating the effects of vehicle feedback on drivers. Whilst performing a specially designed concurrent verbal protocol, 12 drivers drove their own cars around a predetermined 14 mile test route. This was designed to elicit the information that drivers were gaining from the environment and the vehicle, and how this information was being put to use. Prerun questionnaire measures featured driving style and locus of control, whereas postrun measures included self-assessment of mental workload and situational awareness. The vehicles were divided into 2 groups contingent upon their mechanical and engineering specifications into high and low vehicle feedback status, anecdotally, driver's cars versus average cars. A content analysis showed key differences in driver cognition contingent upon the vehicles feedback status. High-feedback vehicles are related to better situational awareness for drivers, coupled with lower workload. Drivers of low-feedback cars used their vehicle's instruments more often (despite having less of them), and it appears overall from self-assessment of situational awareness that drivers are not particularly aware of their own levels of Situational Awareness (SA), or indeed, any shortfall in it. These findings all correspond to feedback model predictions, and suggest a fruitful avenue for further simulator-based research
IRF Family of Transcription Factors as Regulators of Host Defense (2001)

Interferon regulatory factors (IRFs) constitute a family of transcription factors that commonly possess a novel helix-turn-helix DNA-binding motif. Following the initial identification of two structurally related members, IRF-1 and IRF-2, seven additional members have now been reported. In addition, virally encoded IRFs, which may interfere with cellular IRFs, have also been identified. Thus far, intensive functional analyses have been done on IRF-1, revealing a remarkable functional diversity of this transcription factor in the regulation of cellular response in host defense. Indeed, IRF-1 selectively modulates different sets of genes, depending on the cell type and/or the nature of cellular stimuli, in order to evoke appropriate responses in each. More recently, much attention has also been focused on other IRF family members. Their functional roles, through interactions with their own or other members of the family of transcription factors, are becoming clearer in the regulation of host defense, such as innate and adaptive immune responses and oncogenesis.
Lubricative coatings of copper oxide for aerospace applications (2003)

Lubricative coatings of copper oxide on a stainless-steel substrate were synthesized by a rf magnetron sputter deposition method with a different gas ratio of oxygen and argon in sputter plasma. The crystal structure of the coatings was analyzed with x-ray diffraction spectroscopy. The friction force of the coating films in atmospheric pressure and in an ultrahigh vacuum (UHV) was evaluated by a vacuum pin-on-disk tribometer with different ball probes. Friction coefficients (μ) as low as 0.03 and 0.05 for a stainless-steel ball were achieved in atmospheric pressure and in an UHV, respectively. A value of μ=0.04 was also realized for a silicon nitride ball both in atmospheric pressure and in an UHV. Surface energy was analyzed by a contact angle measuring method which reveals that the behavior of the frictional properties correspond with that of the surface energy. Since the coatings consist of oxide, they will be applicable to a low-frictional coating with resistance to oxidation for aerospace applications in a low Earth orbit environment.
Waterflood Management: A Case Study of the Northwest Fault Block Area of Prudhoe Bay, Alaska, Using Streamline Simulation and Traditional Waterflood Analysis (2000)

Abstract This case study of a complex multiple-Zone waterflood in Prudhoe Bay, Alaska, focuses on the basics of waterflood management that are often overlooked. Evaluation of injection well conformance, flood front behavior, and reservoir description, followed by improved injection well management resulted in dramatic improvements in waterflood performance. Assurance of waterflood performance requires an integrated approach and accurate performance predictions. The performance of the Northwest Fault Block (NWFB) waterflood was analyzed with traditional decline curves, Hall plots, and a thorough review of well histories to ascertain that it was under performing. A high-resolution 3-D streamline model proved to be the simulation of choice to answer regional and individual well performance questions for this complex waterflood. After achieving a history match for each of the 200+ wells, streamline modeling provided accurate results of vertical and area wide sweep inefficiencies that were later verified by horizontal drilling. Water cycling was quantified by streamline simulation and injection reduced by 30-40%, resulting in increased production and cost savings. Expansion of the waterflood into the gravity drainage area was stopped. Most importantly, bypassed oil is being developed through an aggressive injection well replacement program. These promising results were achieved by a multidisciplinary team that focused on understanding micro and macro scale reservoir mechanisms. This holistic understanding of mature waterflood behavior, was achieved with a thorough understanding of injection well behavior and streamline simulation at a detailed scale to match each wells performance.
Synthesis and Reactivity of Phosphine-Stabilized Phosphoranimine Cations, [R<sub>3</sub>P·PR′<sub>2</sub>═NSiMe<sub>3</sub>]<sup>+</sup> (2009)

A series of phosphine-stabilized phosphoranimine cations [R(3)P x PR'(2)=NSiMe(3)](+), which can be regarded as derivatives of the proposed transient reactive intermediate [PR'(2)=NSiMe(3)](+) in the thermal condensation polymerization of phosphoranimines (R''O)PR'(2)=NSiMe(3) to form poly(alkyl/arylphosphazenes) [PR'(2)=N](n) at 180-200 degrees C, have been prepared. The bromide salts [R(3)P x PR'(2)=NSiMe(3)]Br [R' = Me ([6](+)), OCH(2)CF(3) ([8](+)); R(3)P = Me(3)P (a), Et(3)P (b), (n)Bu(3)P (c), dmpm (d, dmpm = dimethylphosphinomethane), dmpe (e, dmpe = dimethylphosphinoethane)] were prepared from the direct reactions between BrMe(2)P=NSiMe(3) (5) and Br(CF(3)CH(2)O)(2)P=NSiMe(3) (7) and the corresponding tertiary phosphines R(3)P or the diphosphines Me(2)P(CH(2))(n)PMe(2) (n = 1, 2). Cations of the type [6](+) and [8](+), with electron-donating and -withdrawing groups at the phosphoranimine phosphorus center, respectively, undergo facile phosphine ligand substitution with the strong N-donor 4-dimethylaminopyridine (DMAP) to yield the corresponding DMAP-stabilized salts [DMAP x PR(2)=NSiMe(3)]Br [R = Me ([9](+)), OCH(2)CF(3) ([10](+))]. Cations [6](+) with Br(-) anions are particularly labile: for example, [6a]Br slowly releases PMe(3), BrSiMe(3), and forms cyclic phosphazenes such as [Me(2)P=N](4). Anion exchange reactions between the salts [6b]Br or [8c]Br and AgOTf (OTf = CF(3)SO(3)) quantitatively afforded the corresponding and more stable triflate salts [6b]OTf and [8c]OTf. Phosphine ligand abstraction reactions with B(C(6)F(5))(3) were observed for the bromide salts [6b]Br and [8c]Br, which regenerated the phosphoranimines 5 and 7, respectively, and formed the adduct R(3)P x B(C(6)F(5))(3). In contrast, the triflate salts [6b]OTf and [8c]OTf were unreactive under the same conditions. X-ray structural analysis of the P-donor stabilized cations revealed longer P-P and P-N bond lengths and smaller P-N-Si bond angles for cations [6](+) compared to analogs [8](+). These structural differences were rationalized using the negative hyperconjugation bonding model. In addition, the (1)J(PP) coupling constants for the cations [6](+) observed by both solution and solid-state (31)P NMR are remarkably small (13-25 Hz), whereas those for [8](+) are substantially larger and positive (276-324 Hz) and are as expected for P(IV)(+)-P(V) systems. DFT studies suggest that the significant difference in (1)J(PP) couplings observed for [6](+) and [8](+) appears to be related to the electronegativity of the R' substituents at the phosphoranimine phosphorus center rather than the strength of the donor-acceptor P-P bond, which is slightly weaker in [6](+) relative to that in [8](+), as indicated by the X-ray data and reactivity studies.
Serum and Urine Biomarkers for Human Renal Cell Carcinoma (2015)

Renal cell carcinoma (RCC) diagnosis is mostly achieved incidentally by imaging provided for unrelated clinical reasons. The surgical management of localized tumors has reported excellent results. The therapy of advanced RCC has evolved considerably over recent years with the widespread use of the so-called "targeted therapies." The identification of molecular markers in body fluids (e.g., sera and urine), which can be used for screening, diagnosis, follow-up, and monitoring of drug-based therapy in RCC patients, is one of the most ambitious challenges in oncologic research. Although there are some promising reports about potential biomarkers in sera, there is limited available data regarding urine markers for RCC. The following review reports some of the most promising biomarkers identified in the biological fluids of RCC patients.
Hydraulic Fracture - Field Test to Determine Areal Extent and Orientation (1961)

Abstract This paper concerns field experiments to define the areal extent, orientation and thickness of an artificial fracture in the Sacatosa field, Maverick County, Tex. The fracture was made by a sand-oil treatment of 176,000 gal of lease crude containing a fluid-loss additive and 270,000 lb of 20–40 mesh subangular Poteet sand. The well was perforated with a jet gun, consisting of six shots in a single plane. Fourteen test holes were drilled at various locations around the fractured well. Drill-stem tests, Micro and Sonic Logs, coring and sampling of formation cuttings were used to determine the presence of the fracture in these holes. The test holes were drilled at distances up to 250 ft in a radial pattern around the fractured well. In addition to fracture areal extent and orientation, sand grain size before and after fracturing, erosion of perforations and fracture thickness were studied. Introduction The orientation, areal extent and thickness of artificially induced fractures in reservoir rock by hydraulic means have been discussed in great detail in the oil industry in recent years. Methods for initiating vertical and horizontal fractures have been tested in the laboratory and the field. Although the methods used give successful well stimulation, good field data on the physical characteristics of the fracture are lacking in the literature. It is recognized generally that properties of a fracture, such as thickness, sand placement in the fracture and shape, may vary from reservoir to reservoir. This paper gives data on size, orientation and sand placement in a large fracture initiated in a single plane in Sacatosa field, Maverick County, Tex. It is not intended as a speculative study; rather, it is restricted to actual field data on fracture properties. No attempt is made to prove that the same type of fracture occurs in all wells.
Intraepithelial lymphocytes contain virus-specific, MHC-restricted cytotoxic cell precursors after gut mucosal immunization with reovirus serotype 1/Lang. (1990)

Reovirus 1 has been intraduodenally administered to mice to determine whether virus-specific cytotoxic cells can be elicited within the intestinal epithelium. We have found that reovirus-stimulated, but not control mice, generate virus-specific cytotoxic effector cells when isolated intraepithelial lymphocytes are restimulated in vitro. These effector cells are restricted by major histocompatibility complex (MHC) class I determinants and thus appear to utilize the T cell antigen receptor and to be of the T cell lineage. These results raise the possibility that cytotoxic T lymphocytes (CTL) may be an important component of the host immune response in the intestinal epithelium.
Heterologous expression of human uteroglobin/polychlorinated biphenyl-binding protein. Determination of ligand binding parameters and mechanism of phospholipase A2 inhibition in vitro. (1994)

High level expression of a human polychlorinated biphenyl-binding protein (hPCB-BP; also termed uteroglobin or CC10) was achieved in Escherichia coli. The recombinant protein (rhPCB-BP) constituted approximately 1% of total bacterial lysate proteins as judged from in vitro ligand binding assays using 4,4'-bis([3H]methylsulfonyl)-2,2',5,5'-tetrachlorobiphenyl. rhPCB-BP was purified to homogeneity in its native dimeric form. Saturation analysis experiments indicated a Kd of approximately 69 nM for the binding of 4,4'-bis([3H]methylsulfonyl)-2,2',5,5'-tetrachlorobiphenyl to rhPCB-BP. The average number of binding sites (Bmax) calculated from such experiments on purified rhPCB-BP was 49 nmol/mg of protein and is close to the theoretical value of 1 mol of ligand associating with 1 mol of dimeric protein. Purified rhPCB-BP was also found to cause a dose-dependent inhibition of the enzyme porcine pancreatic phospholipase A2 (PLA2) in vitro. Increasing the concentrations of calcium abolished the inhibition of PLA2 by rhPCB-BP, suggesting that the protein functions in vitro by sequestering Ca2+, an essential PLA2 cofactor. This notion was further supported by direct evidence that 45Ca2+ binds to rhPCB-BP. 1 mol of dimeric protein was also found to bind 2 mol of ruthenium red, an organic dye that detects Ca(2+)-binding proteins, with a Kd of 3 microM. This binding was inhibited by Ca2+, with an IC50 of 7 mM. Finally, it was demonstrated that the addition of a high affinity ligand for the protein had no effect on its ability to inhibit PLA2 under conditions of limiting concentrations of calcium, and the addition of Ca2+ did not affect the binding characteristics of the PCB ligand, suggesting that these two properties of the protein are independent. Our results strongly support the notion that ligand binding is a conserved feature of the homologous uteroglobin/PCB-BP/cc10 proteins in different species, whereas our results question the suggested role of these proteins as specific inhibitors of PLA2.