gebhart/patrepeval huggingface dataset:
Active Learning with Oracle Epiphany (2016)

We present a theoretical analysis of active learning with more realistic interactions with human oracles. Previous empirical studies have shown oracles abstaining on difficult queries until accumulating enough information to make label decisions. We formalize this phenomenon with an “oracle epiphany model” and analyze active learning query complexity under such oracles for both the realizable and the agnos- tic cases. Our analysis shows that active learning is possible with oracle epiphany, but incurs an additional cost depending on when the epiphany happens. Our results suggest new, principled active learning approaches with realistic oracles.
Studies on Biodegradable Poly(Hexano-6-Lactone) Fibers. Part 2: Environmental Degradation (1999)

Abstract Poly(hexano-6-lactone) (PCL*) fibers were degraded under environmental conditions, including soil burial, sea water exposure, and activated sludge exposure. The extent of degradation was examined by weight loss, mechanical properties loss such as tensile strength and ultimate elongation decreases, and visual observations by scanning electron microscopy. The rate of degradation was found to depend on draw ratio and crystallinity of the PCL fibers with surface erosion of amorphous regions more readily than crystalline regions. The life time of highly-drawn PCL fibers when exposed to soil burial and seawater was evaluated from the view point of environmental applications. In terms of degradation mechanism of PCL fiber breakdown biodegradation seems to be the dominant reaction, that is hydrolysis reaction catalyzed by enzyme secreted by microorganisms.
Sampling of Planar Curves: Theory and Fast Algorithms (2019)

We introduce a continuous domain framework for the recovery of a planar curve from a few samples. We model the curve as the zero level set of a trigonometric polynomial. We show that the exponential feature maps of the points on the curve lie on a low-dimensional subspace. We show that the null-space vector of the feature matrix can be used to uniquely identify the curve, given a sufficient number of samples. The worst-case theoretical guarantees show that the number of samples required for unique recovery depends on the bandwidth of the underlying trigonometric polynomial, which is a measure of the complexity of the curve. We introduce an iterative algorithm that relies on the low-rank property of the feature maps to recover the curves when the samples are noisy or when the true bandwidth of the curve is unknown. We also demonstrate the preliminary utility of the proposed curve representation in the context of image segmentation.
<title>Optical waveguide interconnections for optoelectronic multichip modules</title> (1993)

New packaging techniques for opto-electronic multichip modules (OE-MCMs), including OE substrates and optical coupling between a waveguide and a flip-chip bonded photodevice or fiber, are presented for high-speed and wide-band communication systems. The OE substrates, which offer high-density, high-speed optical and electrical interconnection, are made from low loss (0.4 dB/cm) optical polyimide waveguides fabricated on copper-polyimide electrical multilayer substrates. A total internal reflection mirror fabricated at the edge of the optical waveguide reflects the light propagating from the waveguide to a flip-chip bonded photodiode with a loss of less than 1.5 dB. The waveguides are coupled to fibers for inter-module interconnection using the self-aligning fiber guiding method.
Laboratory Performance Evaluation of Residential Integrated Heat Pump Water Heaters (2014)

This paper explores the laboratory performance of five integrated Heat Pump Water Heaters (HPWHs) across a wide range of operating conditions representative of US climate regions. HPWHs are expected to provide significant energy savings in certain climate zones when compared to typical electric resistance water heaters. Results show that this technology is a viable option in most climates, but differences in control schemes and design features impact the performance of the units tested. Tests were conducted to map heat pump performance across the operating range and to determine the logic used to control the heat pump and the backup electric heaters. Other tests performed include two unique draw profile tests, reduced air flow performance tests and the standard DOE rating tests. The results from all these tests are presented here for all five units tested. The results of these tests will be used to improve the EnergyPlus heat pump water heater for use in BEopt(tm) whole-house building simulations.
Medicinal Chemistry and Drug Design (2012)

Over the recent years, medicinal chemistry has become responsible for explaining interactions of chemical molecules processes such that many scientists in the life sciences from agronomy to medicine are engaged in medicinal research. This book contains an overview focusing on the research area of enzyme inhibitors, molecular aspects of drug metabolism, organic synthesis, prodrug synthesis, in silico studies and chemical compounds used in relevant approaches. The book deals with basic issues and some of the recent developments in medicinal chemistry and drug design. Particular emphasis is devoted to both theoretical and experimental aspect of modern drug design. The primary target audience for the book includes students, researchers, biologists, chemists, chemical engineers and professionals who are interested in associated areas. The textbook is written by international scientists with expertise in chemistry, protein biochemistry, enzymology, molecular biology and genetics many of which are active in biochemical and biomedical research. We hope that the textbook will enhance the knowledge of scientists in the complexities of some medicinal approaches; it will stimulate both professionals and students to dedicate part of their future research in understanding relevant mechanisms and applications of medicinal chemistry and drug design.
Review: <i>The Chinese Army: Its Organization and Military Efficiency</i>, by Evans Fordyce Carlson (1941)

Book Review| June 01 1941 Review The Chinese Army: Its Organization and Military EfficiencyEvans Fordyce Carlson G. E. Taylor G. E. Taylor Search for other works by this author on: This Site PubMed Google Scholar Pacific Historical Review (1941) 10 (2): 262–263. https://doi.org/10.2307/3633680 Views Icon Views Article contents Figures & tables Video Audio Supplementary Data Peer Review Share Icon Share Twitter LinkedIn Tools Icon Tools Get Permissions Cite Icon Cite Search Site Citation G. E. Taylor; Review. Pacific Historical Review 1 June 1941; 10 (2): 262–263. doi: https://doi.org/10.2307/3633680 Download citation file: Ris (Zotero) Reference Manager EasyBib Bookends Mendeley Papers EndNote RefWorks BibTex toolbar search Search Dropdown Menu nav search search input Search input auto suggest search filter All ContentPacific Historical Review Search This content is only available via PDF. Copyright 1941 The Pacific Coast Branch, American Historical Association Article PDF first page preview Close Modal You do not currently have access to this content.
Evaluation of Automated Whole-blood Platelet Counts and Particle Sizing (1980)

The Coulter Counter model S-Plus measures the erythrocyte, leukocyte, and platelet counts, and the mean cell volume of erythrocytes and platelets. Two additional features are novel to the instrument: erythrocyte distribution width (RDW), an index of erythrocyte volume heterogeneity, and mean platelet volume. For 677 subjects, we compared these measurements with complete blood counts obtained by a standard instrument, platelet counts from platelet-rich plasma (PRP), and histograms of erythrocyte and platelet volumes generated by free-standing equipment. The two methods correlated well (r = 0.97) for the complete blood count and the mean platelet volume. The whole-blood platelet count correlated well (r = 0.97) with the PRP platelet count, with whole-blood counts on average 5% higher than PRP counts. The whole-blood index of erythrocyte volume heterogeneity, RDW, correlated less well (r = 0.81) with the erythrocyte coefficient of variation measured by histogram. RDW was abnormal for three of 100 normal subjects with normal histograms. RDW was less sensitive (78% vs. 97%) and less specific (94% vs. 97%) than erythrocyte histograms in distinguishing iron deficiency from heterozygous alpha- or beta-thalassemia. We conclude that the Coulter Counter Model S-Plus reliably measures complete blood cell count, platelet count, and mean cell volumes, but analyzes erythrocyte volume distribution less well than does a histogram.
PKR-Dependent and -Independent Mechanisms Are Involved in Translational Shutoff during Sindbis Virus Infection (2004)

The replication of Sindbis virus (SIN) profoundly affects the metabolism of infected vertebrate cells. One of the main events during SIN infection is the strong inhibition of translation of cellular mRNAs. In this study, we used a combination of approaches, including the study of SIN replication in PKR(-/-) mouse embryo fibroblasts or in the presence of an excess of catalytically inactive PKR. We show that the PKR-dependent inhibition of translation is not the only and most likely not the major pathway mediating translational shutoff during SIN infection. The PKR-independent mechanism strongly affects the translation of cellular templates, whereas translation of SIN subgenomic RNA is resistant to inhibition, and this leads to a benefit for viral replication. Our findings suggest that both PKR-dependent and non-PKR-dependent mechanisms of SIN-induced translational shutoff can be manipulated by using SIN replicons expressing mutated SIN nsP2 or kinase-defective PKR. Specifically, we show that expression of heterologous genes from SIN-based and most likely other alphavirus-based replicons can be increased by downregulating both the PKR-dependent and PKR-independent translational shutoffs.
A SERRS/MRI multimodal contrast agent based on naked Au nanoparticles functionalized with a Gd(<scp>iii</scp>) loaded PEG polymer for tumor imaging and localized hyperthermia (2017)

Multimodal contrast agents offer new interesting diagnostic possibilities, summing the benefits of multiple imaging techniques. Magnetic resonance and optical imaging are complementary techniques. The first allows total body screening, even though it suffers from low spatial resolution and needs high loadings, whereas the second shows lower penetration, but bright signals, and a higher spatial resolution and needs lower loadings. We present a plasmonic nanosystem as a MRI (magnetic resonance imaging) and SERRS (surface enhanced resonance Raman scattering) multimodal contrast agent. Naked gold nanoparticles, obtained by laser ablation synthesis in solution, are organized as a highly efficient SERRS substrate with a naphthalocyanine reporter and functionalized with a MRI contrast agent with a newly synthesized 3DOTA-PEG polymer, with a high Gd<sup>III</sup> loading. As a proof of concept, in vivo and ex vivo MRI and SERRS experiments are also performed. The plasmonic property of the nanosystem is then exploited to show its usefulness for localized hyperthermia.
Influence of the Hemoglobin Solution HBOC-201 on Tissue Oxygenation in the Rat R1H-Tumor (2005)

The application of low dose hemoglobin solution HBOC-201 does not result in improvement of tissue oxygenation in the rat rhabdomyosarcoma R1H.
Carboplatin plus Ftorafur as a Palliative Treatment in Locally Advanced Cancer of the Oral Cavity and Lip (1994)

Forty consecutive patients with local advanced cancer of the oral cavity and lip, heavily pretreated, were palliated with two courses of carboplatin, 400 mg/m2 intravenously once a month plus ftorafur, 500 mg/m2 daily per os for 30 days. Previous treatment consisted of surgery (17 patients), radiation therapy (23 patients), and chemotherapy with cisplatin plus bleomycin (15 patients). The main sites of primary tumor were the tongue (12 patients), hard palate (6 patients), retromolar area (6 patients), tonsils (6 patients), perioral skin and lip (5 patients), and floor of the mouth (5 patients). Complete response was observed in 3 patients, and partial response in 7. Symptomatic improvement was observed in 56% of the cases. Median duration of response was 9 months. Median survival was 7 months. The main toxic effects were nausea (39 cases), vomiting (35 cases), and thrombocytopenia (4 cases). We conclude that carboplatin plus ftorafur has a role as palliative chemotherapy in cancer of the oral cavity and lip in heavily pretreated patients when local therapies are not suitable.
Automated quantification of myocardial infarction using graph cuts on contrast delayed enhanced magnetic resonance images. (2012)

In this work, we propose a semi-automated myocardial infarction quantification method for cardiac contrast delayed enhancement magnetic resonance images (DE-MRI). Advantages of this method include that it reduces manual contouring of the left ventricle, obviates a remote myocardium region, and automatically distinguishes infarct, healthy and heterogeneous ("gray zone") tissue despite variability in intensity and noise across images. Quantitative evaluation results showed that the automatically determined infarct core and gray zone size have high correlation with that derived from the averaged results of the manual full width at half maximum (FWHM) methods (R(2)=0.99 for infarct core and gray zone size). Compared with the manual method, a much better reproducibility was achieved with the proposed algorithm and it shortens the evaluation time to one second per image, compared with 2-5 min per image for the manual method.
Surface-Anchored Poly(2-vinyl-4,4-dimethyl azlactone) Brushes as Templates for Enzyme Immobilization (2008)

We explored surface-anchored poly(2-vinyl-4,4-dimethyl azlactone) (PVDMA) brushes as potential templates for protein immobilization. The brushes were grown using atom transfer radical polymerization from surface-anchored initiators and characterized by a combination of ellipsometry, atomic force microscopy, and X-ray photoelectron spectroscopy. RNase A was immobilized as a model enzyme through the nucleophilic attack of azlactone by the amine groups in the lysines located in the protein. The surface density of RNase A increased linearly from 5 to 50 nm. For 50 nm thick poly(2-vinyl-4,4-dimethyl azlactone) brushes, 7.5 microg/cm2 of RNase A was bound. The kinetics and thermodynamics of RNase A immobilization, the activity relative to surface density, and the pH and temperature dependence were examined. A Langmuir-like model for binding kinetics indicates that the kinetics are controlled by the rate of adsorption of RNase A and has an adsorption rate constant, k(ads), of 2.8 x 10(-8) microg(-1) s(-1) cm3. A maximum relative activity of approximately 0.95, which is near the activity of free RNase A, was reached at 1.2 microg/cm2 (approximately 3.0 monolayers) of immobilized RNase A. The immobilized RNase A had a similar temperature and pH dependence as free RNase A, indicating no significant change in conformation. The PVDMA template was extended to other biotechnologically relevant enzymes, such as deoxyribonuclease I, glucose oxidase, glucoamylase, and trypsin, with relative activities higher than or comparable to those of enzymes immobilized by other means. PVDMA brushes offer an efficient route to immobilize proteins via the ring opening of azlactone without the need for activation or pretreatment while retaining high relative activities of the bound enzymes.
Effectiveness of a lysyl chlorin p6/chlorin p6 mixture in photodynamic therapy of the subcutaneous 9L glioma in the rat. (1992)

A new photosensitizer, LCP, a combination of lysyl chlorin p6 and chlorin p6, was synthesized and tested for effectiveness in photodynamic therapy using s.c. implanted 9L glioma tumors in rats. Tumors were irradiated with 664-nm light 4 h after LCP injection. Mean intratumoral temperature elevations were less than 4 degrees C using a power density of 50 mW/cm2 for 33.3 min (100 J/cm2). Subsequent experiments examining histological changes and tumor regrowth used a power density of 50 mW/cm2 and total energy densities of 25, 50, and 100 J/cm2. Microscopically, an energy density-dependent coagulation necrosis of tumor cells occurred in treated tumors. Long term inhibition of tumor growth was achieved only at an energy density of 100 J/cm2. Side effects of treatment were seen only in the irradiated area and consisted of coagulation necrosis of normal tissues in rats treated at 50 and 100 J/cm2, including severe skin necrosis. Exposure of rats to fluorescent room light did not cause any macroscopically detectable skin damage. Our data indicate that photodynamic destruction of s.c. 9L glioma tumors using LCP as a photosensitizer results in significant tumor growth inhibition and that further study of LCP is warranted.
Endwise degradation of hydrocellulose in bicarbonate solution (1978)

Determinations of individual terminal carboxylic acid endgroups and terminal reducing sugar moieties together with analysis of spent liquor revealed that the same reactions occur during treatment of hydrocellulose with hot sodium bicarbonate as with sodium hydroxide solution. Some fragmentation reactions, of little importance in the presence of sodium hydroxide, are favored in bicarbonate medium while benzilic acid rearrangements are less favored. Hence, the formation of 2-dieoxyerythropentonic acid endgroups is more important. Among the soluble reaction products, 3,4-dideoxypentonic acid formed via 3-deoxypentulose and cyclic compounds formed via the same precursor are much more abundant in bicarbonate medium while 3-deoxy-2-hydroxymethylpentonic (isosaccharinic) acids are less abundant.
Cationic Ru<sup>II</sup> Complexes with N‐Heterocyclic Carbene Ligands for UV‐Induced Ring‐Opening Metathesis Polymerization (2008)

Open sesame: Novel cationic RuII complexes with N-heterocyclic carbene ligands (see structure) have been prepared and used as UV-triggerable photoinitiators for ring-opening metathesis polymerization. They may be used for the high-yield synthesis of bulk polymers as well as for surface functionalization. Laser pulse radiolysis and NMR spectroscopy experiments supported by quantum chemical calculations give insight into the initiation mechanism.
Adaptive Selection Of Block Aperture In Transform Coding Of Images (1987)

Transform coding suffers from a necessary block segmentation of the entire image. The block size defines the image resolution by the low-pass characteristic of the bit assignment. Detail-dependent variations of the block aperture achieve adaptive modification of the resolution parameters.
A New Method for the Preparation of Secondary Amines. IV (1955)

1) N-β-Bromoethylsaccharin and α, β-disaccharinoethane were prepared from saccharin and ethylene dibromide, and converted advantageously to RNHCH2CH2NHR, RNHCH2CH2NH2, RNHCH2CH2OH, and RNHCH2CH2OC6H5 by the process shown in Table I.2) The same procedures as above, using trimethylene dibromide, yielded RNHCH2CH2CH2NHR, RNHCH2CH2CH2NH2, RNHCH2CH2CH2OH, and RNHCH2CH2CH2OC6H5.3) Non-symmetric alkylethylenediamines were prepared by the chlorination of RNHCH2CH2OH to RNHCH2CH2Cl, with subsequent application of an amine.4) Potassium saccharin and ethylene dibromide undergo condensation after being heated at above 200° for a long period of time and the formation of a large amount of disaccharinoethane as a by-product cannot be avoided. The use of dimethylformamide as a solvent in this case yielded N-β-bromoethylsaccharin in 90% yield on being heated on a boiling water bath.
Tricritical Point in Explosive Percolation (2011)

The suitable interpolation between classical percolation and a special variant of explosive percolation enables the explicit realization of a tricritical percolation point. With high-precision simulations of the order parameter and the second moment of the cluster size distribution a fully consistent tricritical scaling scenario emerges yielding the tricritical crossover exponent 1/φ(t)=1.8 ± 0.1.
Cooperative Adsorption of Lipoprotein Phospholipids, Triglycerides, and Cholesteryl Esters Are a Key Factor in Nonspecific Adsorption from Blood Plasma to Antifouling Polymer Surfaces (2013)

Nonspecific protein adsorption is a central challenge for the use of polymeric materials in biological media. While the quantity of adsorbed protein can be lowered, very few surfaces are protein resistant when exposed to undiluted serum or plasma. The underlying principles of this fouling and the adsorbing proteins remain to be identified. Here, we investigated adsorption from undiluted human blood plasma to three different polymer brushes. Our study showed that the polymer structure does not influence which proteins adsorb. Further, we identified 98 plasma proteins that still foul current "protein-resistant" polymer brushes. Detailed studies into the major adsorbing protein revealed the central role that lipoproteins and low density lipoprotein in particular play in fouling of plasma to polymeric biomaterials. However, although apolipoprotein B100 is found as a major fouling protein in our mass spectrometry screening, studies on individual components of lipoproteins show that it is not apoB100 but a mixture of phospholipids, triglycerides, and cholesteryl esters that plays a major role in lipoprotein adsorption.
Methods for analysis of the intestinal microflora. (2000)

The concept of probiotics has been around for about 100 years. Yet its impact on human nutrition is still an emerging concept. Lack of convincing scientific validation for the efficacy of any ingested probiotic bacterium on intestinal health, has been a major reason for the low impact of probiotics on human nutrition. Obtaining positive scientific validation requires the use of suitable probiotic strains and also the necessary tools to monitor the performance of these bacteria in the intestines of individuals. To date, selection of strains for probiotic purposes has not been based on a scientific directed approach, primarily because it is not yet fully known what specific traits a desirable probiotic strain should possess. Filling this knowledge void will depend largely on furthering our understanding of the human intestinal ecosystem and the functional role of specific bacteria for intestinal health. Traditional approaches for studying this ecosystem have provided a good foundation in this knowledge base. Complementation of the traditional approaches with the emergence of sophisticated molecular tools shows enormous promise for obtaining the necessary insight into the intestinal microflora. This review will cover the traditional methodologies which have been used to analyze the human intestinal microflora. It will also reveal the development of modern molecular approaches for studying the diversity and phylogeny of its flora, and the rapid molecular tools for monitoring the presence of specific strains in the intestine. Finally, it will address the advent of in situ analysis of individual microbial cells, which promises to provide tremendous advances in our understanding of the microflora and their metabolic activities in the human intestine.
Writing on the Wall with a New Synthetic Quill (2000)

A new class of periodic mesoporous organosilicas (PMOs) with organic groups incorporated inside the channel walls of the material is discussed. In particular, the unique properties and chemistry exhibited by periodic mesoporous methylenesilica, an isoelectronic analogue of periodic mesoporous silica, are highlighted. Finally, some of the advances made in our group and others, as well as future directions that we envision in the field are described.