gebhart/patrepeval huggingface dataset:
Evaluation of recombinant factor VIII (Kogenate<sup>®</sup>) stability for continuous infusion using a minipump infusion device (1998)

Continuous infusion of recombinant factor VIII (rFVIII) is desirable in clinical settings in order to maintain haemostatic levels in a cost-effective manner. This study was designed to determine rFVIII stability over time using a minipump set-up, which has been employed by clinicians for continuous infusion of rFVIII. Vials from three lots of Kogenate (Bayer Corporation) were reconstituted in sterile water for injection, pooled and transferred to minipump infusion sets composed of either polyvinylchloride (Medex # IPR86/tube volume 0.5 mL) or polyethylene (McGraw S5904-52, tube and adapter volume 2.1 mL), and held in temperature-controlled rooms at 5 degrees C, 25 degrees C and 30 degrees C. Additional bags of rFVII were prepared with heparin (4 U mL-1), and maintained at 30 degrees C. rFVIII was infused at a rate of 1.0 mL h-1. Samples were analysed for rFVIII activity over a 7-day period at 0, 1, 15, 24, 78 and 168 h. Prior to the start of the timed study, rFVIII activity was measured in the lot pools and in the polyvinylchloride or polyethylene bags, and in the first flush volumes through the tubing. There was no difference in rFVIII activity measured in the pools compared to the bags. rFVIII levels in the initial 3-mL infusion through the tubing showed a slight decrease in activity compared to the initial level which amounted to an insignificant loss of activity for the polyvinylchloride tubing but a significant loss in the polyethylene tubing (approximately 10 IU absolute loss in polyvinylchloride vs. 100 IU loss in polyethylene). After an initial flush of 1.0 mL for polyvinylchloride and 5.0 mL for polyethylene, activity returned to baseline and subsequently remained stable for all time points and temperatures from 5-30 degrees C over the 7-day period. We conclude that the standard polyvinylchloride in polyethylene minipump bags and tubing provide excellent delivery and stability of rFVIII for continuous infusion with or without heparin, and can be used in hospital and ambulatory settings.
Plasmonic Titanium Nitride Nanostructures via Nitridation of Nanopatterned Titanium Dioxide (2017)

Plasmonic titanium nitride nanostructures are obtained via nitridation of titanium dioxide. Results show that complex nano- and microscale designs of refractory plasmonic nitrides can be realized by utilizing the well-understood oxide material synthesis. Large-scale 3D nanoarchitectures will enable the use of refractory plasmonic materials in a variety of areas including spectrally and angularly selective metamaterials, plasmon-enhanced photocatalysis, and photothermal systems.
An Investigation on Spot Weld Modelling for Crash Simulation with LS-DYNA (2005)

Because of weight reduction necessities, high-strength steels are more and more widely used in bodyin-white (BiW) structures in recent years. Concerning the behaviour of such structures during a car crash the joints between high-strength materials are seen as critical points. Therefore the properties of welded joints, especially the failure behaviour at high velocities have to be taken into consideration during the development phase. In this paper, we present an overview on the current activities at the DaimlerChrysler AG regarding investigations on spot weld failure behaviour. A suitable model that is able to represent the failure behaviour of spot welds in BiW structures and that is independent of mesh sensitivity has been developed. An elasto-plastic material model based on von Mises plasticity (MAT_100) has been further enhanced with a new failure criterion. The model has been implemented into LS-DYNA. The material as well as the failure behaviour is verified and calibrated through precision experiments conducted on specimen level and later validated on component level.
Using Global Code Motions to Improve the Quality of Results for High-Level Synthesis (2004)

The quality of synthesis results for most high-level synthesis approaches is strongly affected by the choice of control flow (through conditions and loops) in the input description. This leads to a need for high-level and compiler transformations that overcome the effects of programming style on the quality of generated circuits. To address this issue, we have developed a set of speculative code-motion transformations that enable movement of operations through, beyond, and into conditionals with the objective of maximizing performance. We have implemented these code transformations, along with supporting code-motion techniques and variable renaming techniques, in a high-level synthesis research framework called Spark. Spark takes a behavioral description in ANSI-C as input and generates synthesizable register-transfer level VHDL. We present results for experiments on designs derived from three real-life multimedia and image processing applications, namely, the MPEG-1 and -2 and GNU image manipulation program applications. We find that the speculative-code motions lead to reductions between 36% and 59% in the number of states in the finite-state machine (controller complexity) and the cycles on the longest path (performance) compared with the case when only nonspeculative code motions are employed. Also, logic synthesis results show fairly constant critical path lengths (clock period) and a marginal increase in area.
Multi‐Scale Geometry Interpolation (2010)

Abstract Interpolating vertex positions among triangle meshes with identical vertex‐edge graphs is a fundamental part of many geometric modelling systems. Linear vertex interpolation is robust but fails to preserve local shape. Most recent approaches identify local affine transformations for parts of the mesh, model desired interpolations of the affine transformations, and then optimize vertex positions to conform with the desired transformations. However, the local interpolation of the rotational part is non‐trivial for more than two input configurations and ambiguous if the meshes are deformed significantly. We propose a solution to the vertex interpolation problem that starts from interpolating the local metric (edge lengths) and mean curvature (dihedral angles) and makes consistent choices of local affine transformations using shape matching applied to successively larger parts of the mesh. The local interpolation can be applied to any number of input vertex configurations and due to the hierarchical scheme for generating consolidated vertex positions, the approach is fast and can be applied to very large meshes.
The Missing Piece Syndrome in Peer-to-Peer Communication (2011)

Typical protocols for peer-to-peer file sharing over the Internet divide files to be shared into pieces. New peers strive to obtain a complete collection of pieces from other peers and from a seed. In this paper we investigate a problem that can occur if the seeding rate is not large enough. The problem is that, even if the statistics of the system are symmetric in the pieces, there can be symmetry breaking, with one piece becoming very rare. If peers depart after obtaining a complete collection, they can tend to leave before helping other peers receive the rare piece. Assuming that peers arrive with no pieces, there is a single seed, random peer contacts are made, random useful pieces are downloaded, and peers depart upon receiving the complete file, the system is stable if the seeding rate (in pieces per time unit) is greater than the arrival rate, and is unstable if the seeding rate is less than the arrival rate. The result persists for any piece selection policy that selects from among useful pieces, such as rarest first, and it persists with the use of network coding.
Discriminative Adversarial Domain Adaptation (2020)

Given labeled instances on a source domain and unlabeled ones on a target domain, unsupervised domain adaptation aims to learn a task classifier that can well classify target instances. Recent advances rely on domain-adversarial training of deep networks to learn domain-invariant features. However, due to an issue of mode collapse induced by the separate design of task and domain classifiers, these methods are limited in aligning the joint distributions of feature and category across domains. To overcome it, we propose a novel adversarial learning method termed Discriminative Adversarial Domain Adaptation (DADA). Based on an integrated category and domain classifier, DADA has a novel adversarial objective that encourages a mutually inhibitory relation between category and domain predictions for any input instance. We show that under practical conditions, it defines a minimax game that can promote the joint distribution alignment. Except for the traditional closed set domain adaptation, we also extend DADA for extremely challenging problem settings of partial and open set domain adaptation. Experiments show the efficacy of our proposed methods and we achieve the new state of the art for all the three settings on benchmark datasets.
Preparation of Toxoplasma gondii RH strain antigen, antigen analysis and antigen detection in sera: a review. (2001)

The prevalence of antibodies detected by serology against Toxoplasma gondii in Indonesia is quite high. Therefore further research concerning the antigen used is important to improve the quality of the assay being used with lower cost. An attempt to prepare T. gondii strain RH antigen followed by using it in the ELISA procedure for detecting IgG showed that there was no significant difference between the local ELISA and Toxonostika quantitatively and qualitatively. Analysis of the antigen was done by Western blot, using sera collected from 30 clinically suspected toxoplasmosis cases which contained IgG only (titer ranging from 1:1,600-> or = 1:3,200); from 9 asymptomatic healthy person, from 5 cases consisted of 1 case of lymphadenitis (IgM titer > or = 1:3200 and IgG titer 1:800) and 4 cases of visual disturbances which had IgM with titer ranging from 1:800 to > or = 1:3,200 and IgG with titer ranging from 1:800 to > or = 1:3,200. It was shown that antigen components of 90, 87, 82, 72, 41, 26 and < or = 6 kDa reacted to all sera containing IgG except sera containing both IgG and IgM. Especially bands of 41 and 26 kDa showed strong reaction with all sera containing IgG, except 2 sera which contained both IgG (titer 1:800) and IgM (titer 1:800 and 1:3,200). These sera collected from 2 left eye vision disturbance cases were not reactive to all antigen components. Strong reactions against bands of 41, 26 and < or = 6 kDa were also shown in sera which contained only IgG collected from 9 healthy persons without any toxoplasmosis symptoms whereas bands of 90, 87, 82 and 72 kDa all showed moderate strong reaction. Contrasting to sera containing only IgG, of 5 sera containing both IgG and IgM 3 of them showed only reactions against bands of 41, 26 and < or = 6 kDa which were strong. It seemed that almost all sera containing IgG gave reaction to 90, 87, 82, 72, 41, 26 and < or = 6 kDa, however different pattern of reaction might occur, probably depending on the nature of infection as more antigen components would be recognized by sera containing IgG alone rather than sera containing both IgM in large quantity and IgG. In another study, an attempt to detect T. gondii antigen in 60 samples was done by using ELISA, and it was shown that circulating antigen was found in 27 (90%) from 30 samples which contained both IgG and IgM, whereas only 2 (66%) from 30 samples which contained only IgG showed positive results. Therefore, antigen detection can be used to identify the acute phase of infection.
Real essentially stochastic matrices: factorizations into special elementary matrices (1981)

In this paper we show that every real essentially stochastic (r.e.s.) matrix A of order n ≥ 2 is a product of at most q(n) elementary r.e.s. matrices with positive determinants (i.e., positive main diagonal entries), plus a transposition matrix if det A < 0, where q( n) is a quadratic polynomial in n. If the rank of A is r, 1 ≤ r ≤ n − 1, the number of singular factors in this factorization is n − r and this number is minimal. Specializing to the stochastic case, this means that every stochastic matrix A of order n ≥ 2 is a product of at most q(n) elementary stochastic and inverse elementary stochastic matrices, plus a transposition matrix if det A < 0, etc. This factorization can be refined so that for any given ε > 0 no elementary factor has a negative (off-diagonal) entry exceeding ε in absolute value.
Determination of the DNA sequence recognized by the bHLH-zip domain of the N-Myc protein (1992)

The DNA-binding domain of the murine N-Myc protein, comprising the basic helix-loop-helix-zipper (bHLH-zip) region was expressed as a fusion protein in E. coli. The affinity purified glutathione-S-transferase-N-Myc fusion protein (GST-N-MYC) was used to select the N-Myc specific DNA-recognition motif from a pool of random-sequence oligonucleotides. After seven rounds of binding-site selection, specifically enriched oligonucleotides were cloned and sequenced. Of 31 individual oligonucleotides whose sequences were determined, 30 contained a common DNA-motif, defining the hexameric consensus sequence CACGTG. We confirm by mutational analysis that binding of the N-Myc derived bHLH-zip domain to this motif is sequence-specific.
<i>pncA</i> Mutations as a Major Mechanism of Pyrazinamide Resistance in <i>Mycobacterium tuberculosis</i> : Spread of a Monoresistant Strain in Quebec, Canada (2000)

Pyrazinamide (PZA) is an important first-line tuberculosis drug that is part of the currently used short-course tuberculosis chemotherapy. PZA is a prodrug that has to be converted to the active form pyrazinoic acid by pyrazinamidase (PZase) activity, encoded by the pncA gene of Mycobacterium tuberculosis, and loss of PZase activity is associated with PZA resistance. To further define the genetic basis of PZA resistance and determine the frequency of PZA-resistant strains having pncA mutations, we sequenced the pncA gene from a panel of 59 PZA-resistant clinical isolates from Canada, the United States, and Korea. Two strains that did not contain pncA mutations and had positive PZase turned out to be falsely resistant. Three PZase-negative strains (MIC, >900 microgram of PZA per ml) and one PZase-positive strain (strain 9739) (MIC, >300 microgram of PZA per ml) did not have pncA mutations. The remaining 53 of the 57 PZA-resistant isolates had pncA mutations, confirming that pncA mutation is the major mechanism of PZA resistance. Various new and diverse mutations were found in the pncA gene. Interestingly, 20 PZA-monoresistant strains and 1 multidrug-resistant isolate from Quebec, Canada, all had the same pncA mutation profile, consisting of an 8-nucleotide deletion and an amino acid substitution of Arg140-->Ser. Strain typing indicated that these strains are highly related and share almost identical IS6110 patterns. These data strongly suggest the spread of a PZA-monoresistant strain, which has not previously been described.
Diagnostic and neural analysis of skin cancer (DANAOS). A multicentre study for collection and computer-aided analysis of data from pigmented skin lesions using digital dermoscopy (2003)

The need for a large database, the usefulness of multicentre data collection, as well as the benefit of a representative collection of cases from clinical practice, were demonstrated in this trial. Images that were difficult to classify using the NN expert system were not identical to those found difficult to classify by clinicians. We suggest therefore that the combination of clinician and computer may potentially increase the accuracy of PSL diagnosis. This may result in improved detection of melanoma and a reduction in unnecessary excisions.
Unusual properties of the cytochrome P450 superfamily (2013)

During the early years of cytochrome P450 research, a picture of conserved properties arose from studies of mammalian forms of these monooxygenases. They included the protohaem prosthetic group, the cysteine residue that coordinates to the haem iron and the reduced CO difference spectrum. Alternatively, the most variable feature of P450s was the enzymatic activities, which led to the conclusion that there are a large number of these enzymes, most of which have yet to be discovered. More recently, studies of these enzymes in other eukaryotes and in prokaryotes have led to the discovery of unexpected P450 properties. Many are variations of the original properties, whereas others are difficult to explain because of their unique nature relative to the rest of the known members of the superfamily. These novel properties expand our appreciation of the broad view of P450 structure and function, and generate curiosity concerning the evolution of P450s. In some cases, structural properties, previously not found in P450s, can lead to enzymatic activities impacting the biological function of organisms containing these enzymes; whereas, in other cases, the biological reason for the variations are not easily understood. Herein, we present particularly interesting examples in detail rather than cataloguing them all.
CHEMISTRY OF THE METAL CARBONYLS. VII. PERFLUOROALKYL IRON COMPOUNDS<sup>1</sup> (1961)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTCHEMISTRY OF THE METAL CARBONYLS. VII. PERFLUOROALKYL IRON COMPOUNDS1T. A. Manuel, S. L. Stafford, and F. G. A. StoneCite this: J. Am. Chem. Soc. 1961, 83, 1, 249–250Publication Date (Print):January 1, 1961Publication History Published online1 May 2002Published inissue 1 January 1961https://pubs.acs.org/doi/10.1021/ja01462a052https://doi.org/10.1021/ja01462a052research-articleACS PublicationsRequest reuse permissionsArticle Views188Altmetric-Citations60LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
In vitro cytotoxic activity of Cymbopogon citratus L. and Cymbopogon nardus L. essential oils from Togo (2008)

The leaf essential oils of Cymbopogon citratus L. and Cymbopogon nardus L. (Poaceae) from Togo were steam-distilled, analyzed for percentage composition and investigated in vitro for their potential cytotoxic activity on human epidermic cell line HaCat. The percentage composition showed that the main constituents of essential oils samples were respectively geranial (45.2%), neral (32.4%) and myrc¨ne (10.2%) for C. citratus essential oil and citronellal (35.5%), geraniol (27.9%) and citronellol (10.7%) for that of C. nardus. The in vitro cytotoxicity bioassays on human epidermic cell line HaCaT revealed that the toxicity of the essential oil from C.citratus (IC50: 150 µL.mL-1) was higher than that of the essential oil from C.nardus (IC50: 450 µL.mL-1). Pure commercial neral, geranial, and citronellal standards showed respectively the following IC50 values: 100, 250 and 300 µL.mL-1). Conversely, pure citronellol standard appeared almost non-toxic (IC50>1000 µL.mL-1), proving the major role played in synergy by neral and geranial in the overall toxicity showed by the citratus oil sample tested in this work.
A Toxin–Antitoxin System Promotes the Maintenance of an Integrative Conjugative Element (2009)

SXT is an integrative and conjugative element (ICE) that confers resistance to multiple antibiotics upon many clinical isolates of Vibrio cholerae. In most cells, this approximately 100 Kb element is integrated into the host genome in a site-specific fashion; however, SXT can excise to form an extrachromosomal circle that is thought to be the substrate for conjugative transfer. Daughter cells lacking SXT can theoretically arise if cell division occurs prior to the element's reintegration. Even though approximately 2% of SXT-bearing cells contain the excised form of the ICE, cells that have lost the element have not been detected. Here, using a positive selection-based system, SXT loss was detected rarely at a frequency of approximately 1 x 10(-7). As expected, excision appears necessary for loss, and factors influencing the frequency of excision altered the frequency of SXT loss. We screened the entire 100 kb SXT genome and identified two genes within SXT, now designated mosA and mosT (for maintenance of SXT Antitoxin and Toxin), that promote SXT stability. These two genes, which lack similarity to any previously characterized genes, encode a novel toxin-antitoxin pair; expression of mosT greatly impaired cell growth and mosA expression ameliorated MosT toxicity. Factors that promote SXT excision upregulate mosAT expression. Thus, when the element is extrachromosomal and vulnerable to loss, SXT activates a TA module to minimize the formation of SXT-free cells.
An NF-kappa B-like transcription factor mediates IL-1/TNF-alpha induction of gro in human fibroblasts (1991)

Normal human foreskin fibroblasts were used to examine transcriptional induction by IL-1 and TNF-alpha of the novel cytokine gro (melanoma growth-stimulating activity). Gro mRNA was expressed at levels 100-fold above background within 45 min of exposure to either IL-1 or TNF-alpha, in growing or serum-starved cells and a similar response was shown by IL-6. In contrast, as shown previously, gro mRNA was elevated only 10-fold by serum in starved but not in growing cells, similar to fos. Thus gro expression appears to be regulated by at least two signal transduction systems: a cytokine pathway, and a growth-related pathway. Three closely related gro genes (alpha, beta, and gamma) have been described. Their proximal 5' regulatory sequences presented here show close similarity in the region to -136, which includes the NF-kappa B site at -66 to -76 in gro alpha and gro gamma, and -64 to -74 in gro beta, and sequence diversity further upstream. Transient transfection of HeLa cells with CAT constructs localized the cytokine response to a region between -84 and -65 in gro beta. Gel retardation studies with FS-2 cells identified a cytokine-induced protein binding at the NF-kappa B site in all three gro genes as shown by competition studies with a pair of oligonucleotides representing wild-type and mutant sequences of the NF-kappa B binding site. Neither serum nor PMA induced a detectable gel shift at NF-kappa B or upstream to position -723. These results demonstrate conservation of the cytokine response element, NF-kappa B, in the three genes, consistent with the conservation of sequence in this region; and suggest that differential expression of the three gro genes may depend upon interactions with other sites located in the divergent upstream region.