gebhart/patrepeval huggingface dataset:
Analysis of an Algorithm for Finding Nearest Neighbors in Euclidean Space (1979)

article Analysis of an Algorithm for Finding Nearest Neighbors in Euclidean Space Share on Author: John Gerald Cleary University of Canterbury, Christchurch 1, New Zealand University of Canterbury, Christchurch 1, New ZealandView Profile Authors Info & Claims ACM Transactions on Mathematical SoftwareVolume 5Issue 2June 1979 pp 183–192https://doi.org/10.1145/355826.355832Online:01 June 1979Publication History 41citation850DownloadsMetricsTotal Citations41Total Downloads850Last 12 Months8Last 6 weeks1 Get Citation AlertsNew Citation Alert added!This alert has been successfully added and will be sent to:You will be notified whenever a record that you have chosen has been cited.To manage your alert preferences, click on the button below.Manage my AlertsNew Citation Alert!Please log in to your account Save to BinderSave to BinderCreate a New BinderNameCancelCreateExport CitationPublisher SiteGet Access
The hexokinase gene is required for transcriptional regulation of the glucose transporter gene RAG1 in Kluyveromyces lactis. (1993)

The RAG1 gene of Kluyveromyces lactis encodes a low-affinity glucose/fructose transporter. Its transcription is induced by glucose, fructose, and several other sugars. The RAG4, RAG5, and RAG8 genes are trans-acting genes controlling the expression of the RAG1 gene. We report here the characterization of one of these genes, RAG5. The nucleotide sequence of the cloned RAG5 gene indicated that it encodes a protein that is homologous to hexokinases of Saccharomyces cerevisiae. rag5 mutants showed no detectable hexokinase or glucokinase activity, suggesting that the sugar kinase activity encoded by this gene is the only hexokinase in K. lactis. Both high- and low-affinity transport systems of glucose were affected in rag5 mutants. The defect of the low-affinity component was found to be due to a block of transcription of the RAG1 gene by the hexokinase mutation. In vivo complementation of the rag5 mutation by the HXK2 gene of S. cerevisiae and complementation of hxk1 hxk2 mutations of S. cerevisiae by the RAG5 gene showed that RAG5 and HXK2 were equivalent for sugar-phosphorylating activity but that RAG5 could not restore glucose repression in the S. cerevisiae hexokinase mutants.
Biophysical and Functional Characterization of Full-length, Recombinant Human Tissue Inhibitor of Metalloproteinases-2 (TIMP-2) Produced in Escherichia coli (1999)

Matrix metalloproteinases (MMPs) function in the remodeling of the extracellular matrix that is integral for many normal and pathological processes. The tissue inhibitor of metalloproteinases family, including tissue inhibitor of metalloproteinases-2 (TIMP-2), regulates the activity of these multifunctional metalloproteinases. TIMP family members are proteinase inhibitors that contain six conserved disulfide bonds, one involving an amino-terminal cysteine residue that is critical for MMP inhibitor activity. TIMP-2 has been expressed in Escherichia coli, folded from insoluble protein, and functionally characterized. The wild type protein inhibited gelatinase A (MMP-2), whereas a variant with an alanine appended to the amino terminus (Ala+TIMP-2) was inactive. Removal of amino-terminal alanine by exopeptidase digestion restored protease inhibitor activity. This confirms the mechanistic importance of the amino-terminal amino group in the metalloproteinase inhibitory activity, as originally suggested from the x-ray structure of a complex of MMP-3 with TIMP-1 and a complex of TIMP-2 with MT-1-MMP. The Ala+TIMP-2 variant exhibited conformational, pro-MMP-2 complex formation and fibroblast growth modulating properties of the wild type protein. These findings demonstrate that Ala+TIMP-2 is an excellent biochemical tool for examining the specific role of MMP inhibition in the multiple functions ascribed to TIMPs.
Kinetic study of the enantioselective hydrolysis of a meso-diester using pig liver esterase (2000)

A kinetic study of the hydrolysis of the diester dimethyl cis-cyclohex-4-ene-1,2-dicarboxylate, to the (1S,2R)-monoester, catalysed by the enzyme Pig Liver Esterase (PLE) was performed. The effects of the most relevant parameters that influence the enzymatic conversion were studied, such as pH, temperature and concentration of substrate and reaction products. It was concluded that the pH at which the enzyme exhibits a maximum activity is pH 7. At 25 °C PLE presents a better long-term stability and enantioselectivity than at higher temperatures, although the reaction rate is slower. The kinetic results obtained are well described by the Michaelis–Menten equation, although a slight deviation to this model was observed for low substrate concentrations. Methanol, a co-product of the enzymatic hydrolysis, was found to act as a non-competitive inhibitor of the reaction. The Michaelis–Menten parameters were determined and a comprehensive kinetic model, which already accounts for methanol inhibition, is presented. © 2000 Society of Chemical Industry
Cross-Architecture Bug Search in Binary Executables (2015)

With the general availability of closed-source software for various CPU architectures, there is a need to identify security-critical vulnerabilities at the binary level to perform a vulnerability assessment. Unfortunately, existing bug finding methods fall short in that they i) require source code, ii) only work on a single architecture (typically x86), or iii) rely on dynamic analysis, which is inherently difficult for embedded devices. In this paper, we propose a system to derive bug signatures for known bugs. We then use these signatures to find bugs in binaries that have been deployed on different CPU architectures (e.g., x86 vs. MIPS). The variety of CPU architectures imposes many challenges, such as the incomparability of instruction set architectures between the CPU models. We solve this by first translating the binary code to an intermediate representation, resulting in assignment formulas with input and output variables. We then sample concrete inputs to observe the I/O behavior of basic blocks, which grasps their semantics. Finally, we use the I/O behavior to find code parts that behave similarly to the bug signature, effectively revealing code parts that contain the bug. We have designed and implemented a tool for cross architecture bug search in executables. Our prototype currently supports three instruction set architectures (x86, ARM, and MIPS) and can find vulnerabilities in buggy binary code for any of these architectures. We show that we can find Heart bleed vulnerabilities, regardless of the underlying software instruction set. Similarly, we apply our method to find backdoors in closed source firmware images of MIPS- and ARM-based routers.
Stimulation of soluble guanylyl cyclase protects against obesity by recruiting brown adipose tissue (2015)

Obesity is characterized by a positive energy balance and expansion of white adipose tissue (WAT). In contrast, brown adipose tissue (BAT) combusts energy to produce heat. Here we show that a small molecule stimulator (BAY 41-8543) of soluble guanylyl cyclase (sGC), which produces the second messenger cyclic GMP (cGMP), protects against diet-induced weight gain, induces weight loss in established obesity, and also improves the diabetic phenotype. Mechanistically, the haeme-dependent sGC stimulator BAY 41-8543 enhances lipid uptake into BAT and increases whole-body energy expenditure, whereas ablation of the haeme-containing β1-subunit of sGC severely impairs BAT function. Notably, the sGC stimulator enhances differentiation of human brown adipocytes as well as induces 'browning' of primary white adipocytes. Taken together, our data suggest that sGC is a potential pharmacological target for the treatment of obesity and its comorbidities.
Colour hologram projection with an SLM by exploiting its full phase modulation range (2014)

We demonstrate independent and simultaneous manipulation of light beams of different wavelengths by a single hologram, which is displayed on a phase-only liquid crystal spatial light modulator (SLM). The method uses the high dynamic phase modulation range of modern SLMs, which can shift the phase of each pixel in a range between 0 up to 10π, depending on the readout wavelength. The extended phase range offers additional degrees of freedom for hologram encoding. Knowing the phase modulation properties of the SLM (i.e. the so-called lookup table) in the entire exploited wavelength range, an exhaustive search algorithm allows to combine different independently calculated 2π-holograms into a multi-level hologram with a phase range extending over several multiples of 2π. The combined multi-level hologram then reconstructs the original diffractive patterns with only small phase errors at preselected wavelengths, thus projecting the desired image fields almost without any crosstalk. We demonstrate this feature by displaying a static hologram at an SLM which is read out with an incoherent red-green-blue (RGB) beam, projecting a color image at a camera chip. This is done for both, a Fourier setup which needs a lens for image focusing, and in a "lensless" Fresnel setup, which also avoids the appearance of a focused zero-order spot in the image center. The experimentally obtained efficiency of a two-colour combination is on the order of 83% for each wavelength, with a crosstalk level between the two colour channels below 2%, whereas a three-colour combination still reaches an efficiency of about 60% and a crosstalk level below 5%.
Pre- and Postexposure Protection against Human Immunodeficiency Virus Type 1 Infection Mediated by a Monoclonal Antibody (1995)

Monoclonal antibody BAT123 was passively transferred into SCID mice reconstituted with human peripheral blood lymphocytes (hu-PBL-SCID) to study passive antibody protection against human immunodeficiency virus type 1 (HIV-1) infection. BAT123 is specific for the third variable loop of the gp120 of HIV-1LAI. Animals were protected against subsequent infection with LAI strain, but not other virus strains, when BAT123 (1 mg/kg; 25 micrograms/mouse) was given 1 h before virus inoculation. This resulted in a peak serum concentration of 16 micrograms/mL of the antibody, which should be easily attainable in humans. In addition, postexposure protection was observed when the antibody was given within 4 h of virus inoculation. No therapeutic effect was observed, however, when BAT123 was administered after infection had been established. These results indicate that passive antibody prophylaxis against HIV-1 infection may be possible in certain clinical situations.
Phase III Trial of Infusional Fluorouracil, Leucovorin, Oxaliplatin, and Irinotecan (FOLFOXIRI) Compared With Infusional Fluorouracil, Leucovorin, and Irinotecan (FOLFIRI) As First-Line Treatment for Metastatic Colorectal Cancer: The Gruppo Oncologico Nord Ovest (2007)

The FOLFOXIRI regimen improves RR, PFS, and OS compared with FOLFIRI, with an increased, but manageable, toxicity in patients with metastatic colorectal cancer with favorable prognostic characteristics. Further studies of FOLFOXIRI in combination with targeted agents and in the neoadjuvant setting are warranted.
Eye-tracking capabilities of low-cost EOG system (2014)

This paper presents the design and implementation of a low-cost eye tracking system that allows measuring the rotational angle of the eye and gaze direction in healthy individuals. The system consists of an EOG circuit with simple components that acquire both horizontal and vertical eye movement through regular all-purpose contact electrodes. Then the data are analyzed and translated into corresponding angle values representing the eye rotation angle in both orientations. Results show that horizontal angle measurements are much more accurate than vertical measurements. A discussion regarding the performance and possible improvements is presented.
Design for manufacturability and design for "X": concepts, applications, and perspectives (2002)

Design for Manufacturability (DFM) is a system approach that simultaneously considers all of the design goals and constraints for products that will be manufactured. Sometimes DFM is confused with Design for Assembly (DFA), which is only one aspect of design for Manufacturability. Other aspects include all the "design for's" or "-abilities"; design for Quality, design for Maintainability, etc. They are sometimes referred to as "design for X" (DFX). This paper presents the concepts, applications, and perspectives of DFX, thus, providing some guidelines and references for the future researches and implementations.
In Vivo Antibacterial Activity of RWJ-54428, a New Cephalosporin with Activity against Gram-Positive Bacteria (2002)

RWJ-54428 (MC-02,479) is a new cephalosporin with activity against resistant gram-positive organisms, including methicillin-resistant Staphylococcus aureus, vancomycin-resistant enterococci, and penicillin-resistant Streptococcus pneumoniae. The in vivo efficacy of RWJ-54428 was evaluated against gram-positive bacteria in four mouse models of infection. RWJ-54428 was effective in vivo against methicillin-susceptible and -resistant S. aureus in a mouse model of sepsis, with 50% effective doses being similar to those of vancomycin. In a single-dose neutropenic mouse thigh model of infection, RWJ-54428 at 30 mg/kg of body weight showed activity similar to that of vancomycin at 30 mg/kg against a strain of methicillin-resistant S. aureus. RWJ-54428 also showed a prolonged in vivo postantibiotic effect in this model. In a mouse model of pneumonia due to a penicillin-susceptible strain of Streptococcus pneumoniae, RWJ-54428 displayed efficacy and potency superior to those of penicillin G and cefotaxime. In a mouse model of pyelonephritis due to Enterococcus faecalis, RWJ-54428 had bactericidal effects similar to those of vancomycin and ampicillin, but at two- to threefold lower total daily doses. These studies show that RWJ-54428 is active in experimental mouse models of infection against gram-positive organisms, including strains resistant to earlier cephalosporins and penicillin G.
Synthese von Alkyldisulfiden mit verschiedenen Radikalen (1886)

Ebenso
Reti di formazione alla nonviolenza. Viaggi in training (1992-1998) (1999)

Il testo prosegue (rispetto al testo precedente, del 1992) a descrivere e commentare le esperienze formative svolte dall'autore, insieme ai suoi collaboratori, sui temi della nonviolenza, dell'educazione alla pace e all'ecologia, all'intercultura. Con un ricco patrimonio di giochi ed esercizi, finalizzati ad una crescita della sensibilità sui temi sopraddetti.
Alain Hus, « Docere » et les mots de la famille de « docere », 1965 (1971)

Martin Rene. Alain Hus, « Docere » et les mots de la famille de « docere », 1965. In: Revue des Etudes Anciennes. Tome 73, 1971, n°1-2. pp. 228-229.
Polyunsaturated Phosphatidylcholine Lowers Collagen Deposition in a Rat Model of Corrosive Esophageal Burn (2002)

Esophageal strictures are characterized by excess deposition of collagen in the esophageal wall. Polyunsaturated phosphatidyl-choline (PPC) stimulates collagen breakdown in experimental models of liver cirrhosis and colitis. This study was done in order to investigate the therapeutical effect of PPC in preventing esophageal strictures due to alkali-induced esophageal burns in rats. Fifty-five albino rats were divided into four groups as follows: control group (Group A, 10 rats), rats with sham operation and treated with saline (Group B, 15 rats), rats with esophageal burns only (Group C, 15 rats), and PPC-fed rats with esophageal burns (Group D, 15 rats). A standard esophageal burn was produced as described by Gehanno. PPC was administered orally to Group D rats in doses of 100 mg/day for four weeks. All animals were sacrificed on the 28th day of the experiment. Hydroxyproline levels in esophageal tissue was determined in each rat, and histopathologic evaluation was performed for each group. Hydroxyproline levels were significantly lower in the PPC-fed rats than in the rats with pure esophageal burns (p < 0.001). Histopathologically, collagen deposition in the submucosa and tunica muscularis was lower in Group D rats (PPC-fed rats with esophageal burn) than Group C rats (pure esophageal burn) (p < 0.05). As a result of our study, we concluded that PPC has an ameliorating effect on stricture formation after alkali-induced corrosive esophageal burns in rats.
Neurovisceral and Skeletal G <sub>M1</sub> -Gangliosidosis in Dogs with β-Galactosidase Deficiency (1985)

Beta-galactosidase-deficient siblings in two litters of English springer spaniel puppies showed a progressive neurological impairment, dwarfism, orbital hypertelorism, and dysostosis multiplex. An excess of GM1-ganglioside was found in the brain. Three abnormal oligosaccharides were present in samples of urine, brain, liver, and cartilage. Light microscopy of selected tissue specimens revealed cytoplasmic vacuoles in neurons, circulating blood cells, macrophages, and chondrocytes. Ultrastructural studies demonstrated that these membrane-bound vacuoles were of two types--one containing lamellated membranes and the other, finely granular material. These clinical and pathological findings are similar to those observed in human patients affected by the infantile form of GM1-gangliosidosis.
ChemInform Abstract: A New Synthesis of Heterocycles via Carbonylation of Amines with Carbon Monoxide in the Presence of Selenium. (1989)

Abstract The diamines (I) react with carbon monoxide (II) and selenium to form the imidazolidinones (III).
<b>Azo-Hydrazone Conversion. I. The Japp-Klingemann Reaction</b> (1962)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTAzo-Hydrazone Conversion. I. The Japp-Klingemann ReactionHsien Cheng. Yao and Paul. ResnickCite this: J. Am. Chem. Soc. 1962, 84, 18, 3514–3517Publication Date (Print):September 1, 1962Publication History Published online1 May 2002Published inissue 1 September 1962https://doi.org/10.1021/ja00877a018RIGHTS & PERMISSIONSArticle Views948Altmetric-Citations97LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (461 KB) Get e-Alerts Get e-Alerts
Preserving Both Privacy and Utility in Network Trace Anonymization (2018)

As network security monitoring grows more sophisticated, there is an increasing need for outsourcing such tasks to third-party analysts. However, organizations are usually reluctant to share their network traces due to privacy concerns over sensitive information, e.g., network and system configuration, which may potentially be exploited for attacks. In cases where data owners are convinced to share their network traces, the data are typically subjected to certain anonymization techniques, e.g., CryptoPAn, which replaces real IP addresses with prefix-preserving pseudonyms. However, most such techniques either are vulnerable to adversaries with prior knowledge about some network flows in the traces, or require heavy data sanitization or perturbation, both of which may result in a significant loss of data utility. In this paper, we aim to preserve both privacy and utility through shifting the trade-off from between privacy and utility to between privacy and computational cost. The key idea is for the analysts to generate and analyze multiple anonymized views of the original network traces; those views are designed to be sufficiently indistinguishable even to adversaries armed with prior knowledge, which preserves the privacy, whereas one of the views will yield true analysis results privately retrieved by the data owner, which preserves the utility. We formally analyze the privacy of our solution and experimentally evaluate it using real network traces provided by a major ISP. The results show that our approach can significantly reduce the level of information leakage (e.g., less than 1% of the information leaked by CryptoPAn) with comparable utility.
Interaction of tubulin with single ring analogs of colchicine (1982)

Simple analogues of the tropolone and trimethoxyphenyl moieties of colchicine have been used as probes for the colchicine binding site of purified calf brain tubulin. [3H]Tropolone methyl ether was found to bind to one site per tubulin molecule with equilibrium constant of (2.2 +/- 0.2) x 10(3) M-1 at 0 degree C, with the interaction having delta H0app = -8.3 +/- 1.0 kcal mol-1 and delta S0app = -15.2 +/- 3.6 eu. The binding of tropolone methyl ether and colchicine was inhibited by each other. Both tropolone and its methyl ether inhibited tubulin polymerization into microtubules in vitro. N-[3H]Acetylmescaline bound to tubulin with a K congruent to 4 x 10(2) M-1 at 37 degrees C. This interaction was inhibited by colchicine and at lower temperatures was below the sensitivity of the measuring method employed. [14C]Mescaline interacted with higher affinity site(s) not related to the colchicine site. Both mescaline and N-acetylmescaline inhibited partially the microtubule assembly at 10(-3) M concentrations. No linkage was observed between the binding of tropolone methyl ether and N-acetylmescaline. The relatively weak interactions of both the two separate parts of colchicine can account quantitatively for the much tighter binding of the complete drug to tubulin within a proposed model which takes into account the entropic advantage of colchicine as a bifunctional ligand.
Combined neuropathological pathways account for age‐related risk of dementia (2018)

Age-related increases in dementia risk can be attributed to accumulation of multiple pathologies, each of which contributes to dementia risk. Multipronged approaches may be necessary if we are to develop effective therapies. Ann Neurol 2018;84:10-22.
Mutation analysis of BRAF and KIT in circulating melanoma cells at the single cell level (2012)

Melanoma cells show clonal heterogeneity. Therefore, CTC genotyping may be crucial for successful molecular-targeted therapy.