gebhart/patrepeval huggingface dataset:
Expression of Engineered Antibodies in Plants: A Possible Tool for Spiroplasma and Phytoplasma Disease Control (1998)

ABSTRACT In an attempt to develop maize plants with resistance to corn stunt spi-roplasma (CSS), a single-chain Fv fragment (scFv) gene that was constructed from antibodies with strong inhibitory activity against CSS, was expressed in a cell line of maize. However, plants regenerated from this transgenic cell line showed no distinct resistance to CSS infection under the greenhouse conditions. The affinity and functionality of scFv in vivo and the locations of CSS and expressed scFv in maize could be a part of the contributing factors affecting this result. Progress of expressing antibodies in plants for plant pathogen resistance is also discussed.
The mechanism of action of the adrenomedullin-binding antibody adrecizumab (2018)

Contains fulltext : 196331.pdf (Publisher’s version ) (Open Access)
Hot-carrier induced electron mobility and series resistance degradation in LDD NMOSFET's (1994)

The mobility and the series resistant degradation of LDD NMOSFET's were determined independently for the first time. Three device structures with different styles of drain engineering: 1) modestly doped LDD; 2) large-angle-tilt implanted drain, and 3) buried LDD were studied. We observed clearly that the series resistant drift dominates the initial device degradation and the relative importance of the mobility degradation increases as the stress time proceeds. Our work provides a useful guideline for device reliability optimization and for the development of the device degradation model for the circuit reliability simulation.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Floral determination and expression of floral regulatory genes in <i>Arabidopsis</i> (1997)

The expression of the floral regulators LEAFY, APETALA1 and AGAMOUS-LIKE8 was examined during light treatments that induced flowering in Arabidopsis, and was compared to time points at which floral determination occurred. Extension of an 8-hour day by either continuous red- or far-red-enriched light induced LEAFY and AGAMOUS-LIKE8 expression within 4 hours. The 4 hours of additional light was sufficient for floral determination only in the far-red-enriched conditions, while 12-16 hours of additional light was required for floral determination in the red-enriched conditions. These results indicate that the induction of floral regulatory genes and induction of flower formation can be uncoupled under certain circumstances. Expression of LEAFY and AGAMOUS-LIKE8 in the shoot apex at the time of floral determination is also consistent with genetic data indicating that these genes are involved in the first steps of the transition from vegetative to reproductive development. In contrast to LEAFY and AGAMOUS-LIKE8, APETALA1 expression was first observed 16 hours after the start of photoinduction. Since this time point was always after floral determination, APETALA1 is an indicator of floral determination.
Ultra low radiation dose digital subtraction angiography (DSA) imaging using low rank constraint (2015)

In this work we developed a novel denoising algorithm for DSA image series. This algorithm takes advantage of the low rank nature of the DSA image sequences to enable a dramatic reduction in radiation and/or contrast doses in DSA imaging. Both spatial and temporal regularizers were introduced in the optimization algorithm to further reduce noise. To validate the method,<i> in vivo </i>animal studies were conducted with a Siemens Artis Zee biplane system using different radiation dose levels and contrast concentrations. Both conventionally processed DSA images and the DSA images generated using the novel denoising method were compared using absolute noise standard deviation and the contrast to noise ratio (CNR). With the application of the novel denoising algorithm for DSA, image quality can be maintained with a radiation dose reduction by a factor of 20 and/or a factor of 2 reduction in contrast dose. Image processing is completed on a GPU within a second for a 10s DSA data acquisition.
Designing wheat gluten based materials (2015)

Various characteristics of wheat gluten proteins, such as availability, unique intrinsic properties and biodegradability, make them attractive candidates for designing sustainable materials. The unique functionality of wheat gluten stems from its very high molar mass and the presence of cysteine amino acid residues, which upon heating provide the polymeric system with intermolecular disulfide crosslinks. Here, we demonstrate that with the use of proper additives one can obtain gluten based materials with properties that range from stiff to rubbery. A stiff material was produced by compression molding gluten with low levels of plasticizer. Routes for improving the ductility of the stiff material by manipulating the native protein structure were explored. In contrast, a rubbery thermoplastic vulcanizate (TPV) material was produced by extruding a gluten rubber precursor with a thermoplastic polymer, and subsequently injection molding to give a final product. Adhesion between the two phases was optimized by reactive compatibilization. The mechanical performance of stiff gluten materials was significantly improved by processing the proteins in denaturing conditions prior to molding. Molecular entanglements and polymer secondary interactions appeared to be increased and the material exhibited strain hardening under compressive loads. The TPV material had a finely dispersed particle morphology and showed excellent elongation in tensile tests as well as good mechanical recovery. Proteins are complex macromolecules with inherent folded structures, a diverse mix of functional monomers and a vulnerability towards degradation at high temperatures. With this in mind, polymer processing approaches need to be adapted and tailored in order to realize the potential of protein based materials. We have shown that high modulus materials approaching engineering polystyrene, as well as elastomers for the ‘soft touch’ industry, can be produced from a common protein feedstock. End of life options for both classes of materials have also been considered.
A digital color CCD imaging system using custom VLSI circuits (1989)

The authors describe a prototype digital imaging system that can be configured as a single-sensor video camera or a film-to-video converter. The system includes a CCD (charge-coupled device) image sensor with a 3G color filter pattern, two full-custom CMOS digital video signal processing chips, and a custom electronically programmable sequencer chip. The CMOS VLSI digital circuits offer real-time operation while meeting the size, power, and cost constraints of one-chip cameras and fill-to-video converters. System timing and design methodology are discussed.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Parasite detection efficiencies of five stool concentration systems (1990)

Fresh fecal material that was free of ova and parasites was pooled with 10% Formalin in a 1:4 ratio to prepare a standard specimen. Portions of 100 ml of this specimen were individually seeded with Cryptosporidium oocysts, Entamoeba coli, Entamoeba histolytica, and Giardia lamblia cysts; ova of Necator americanus; and Strongyloides larvae. Appropriate volumes of each parasite suspension were used to evaluate the Fecal Concentrator Kit (Remel, Lenexa, Kans.), Fecal Parasite Concentrator (Evergreen Scientific, Los Angeles, Calif.), Para-Pak Macro-Con (Meridian Diagnostics, Inc., Cincinnati, Ohio), and Trend FeKal CON-Trate (Trend Scientific, Inc., St. Paul, Minn.). A standardized gauze filtration method was used as the reference procedure. Tests were performed in triplicate with each individual parasite-concentrator combination, with three slides examined from each sediment. All of the systems effectively concentrated parasites compared with direct examination of unconcentrated fecal material. The Fecal Concentrator Kit provided the best overall performance. Clarity of sediment, lack of debris, and uniformity of background material were found to be important considerations for microscopic detection of parasites in concentrated specimens.
Properties of Subviral Particles of Hepatitis B Virus (2008)

In the sera of patients infected with hepatitis B virus (HBV), in addition to infectious particles, there is an excess (typically 1,000- to 100,000-fold) of empty subviral particles (SVP) composed solely of HBV envelope proteins in the form of relatively smaller spheres and filaments of variable length. Hepatitis delta virus (HDV) assembly also uses the envelope proteins of HBV to produce an infectious particle. Rate-zonal sedimentation was used to study the particles released from liver cell lines that produced SVP only, HDV plus SVP, and HBV plus SVP. The SVP made in the absence of HBV or HDV were further examined by electron microscopy. They bound efficiently to heparin columns, consistent with an ability to bind cell surface glycosaminoglycans. However, unlike soluble forms of HBV envelope protein that were potent inhibitors, the SVP did not inhibit the ability of HBV and HDV to infect primary human hepatocytes.
Effectiveness of an Internal Teat Seal in the Prevention of New Intramammary Infections During the Dry and Early-Lactation Periods in Dairy Cows when used with a Dry Cow Intramammary Antibiotic (2003)

The objectives of this study were to determine the effect of infusion with an internal teat seal at dry off, when used as an adjunct to long-acting antibiotic infusion at dry off, on the risk for acquiring a new intramammary infection (IMI) during the dry period, prevalence of IMI and linear score (LS) after calving, and risk for experiencing a clinical mastitis event between dry off and 60 DIM. A total of 437 cows from 2 dairy herds, with no clinical mastitis and 4 functional quarters, were enrolled at dry off. Prior to the final milking, all quarters were sampled for bacteriological culture and SCC analysis. After milking, all 4 quarters were infused with a commercially available long-acting dry cow antibiotic. Two contralateral quarters were then infused with an internal teat seal (Orbeseal, Pfizer Animal Health, New York). Following calving the teat seal was stripped out at first milking. Duplicate milk samples were collected between 1 to 3 DIM and again between 6 to 8 DIM for culture and SCC analysis. Quarters treated with Orbeseal had significantly lower prevalence of IMI at 1 to 3 DIM (tx = 22.8%, control = 29.1%), had significantly fewer quarters that acquired a new IMI between dry off and 1 to 3 DIM (tx = 20.2%, control = 25.4%), and had significantly fewer quarters affected by a clinical mastitis event between dry off and 60 DIM (tx = 5.9%, control = 8.0%). Multivariable analysis showed a significant effect of treatment, with treated quarters being 30% less likely to develop a new IMI between dry off and 1 to 3 DIM, 31% less likely to have an IMI present at 1 to 3 DIM, 33% less likely to experience a clinical mastitis event between dry off and 60 DIM, and having significantly lower linear score measures at 1 to 3 DIM and 6 to 8 DIM, compared with control quarters.
Design and implementation of a wireless prescription system (2004)

We explore by design and implementation the applicability of J2EE (Java 2 Platform, Enterprise Edition) architecture in supporting wireless services as well as Web based services. This has been demonstrated by implementing a wireless prescription system, which provides wireless services to physicians, and Web based services to pharmacies and administrators. The goal of the wireless prescription system is to improve the efficiency of the healthcare system by reducing the overall time and cost used to create documents and retrieve information. We also present a performance evaluation of the implemented wireless prescription system using latency as the performance metric. In particular, we investigated the overheads associated with different components of the underlying J2EE architecture, which includes the Session Bean, Entity Bean, and the database. We found that the latency overheads introduced by these components account for 3.8% to 4.3%, 3.9% to 4.4%, and 91.8% of the total delay experienced inside the J2EE architecture respectively.
A Procedure for Measuring Peptides in Rumen Fluid and Evidence that Peptide Uptake Can Be a Rate-Limiting Step in Ruminal Protein Degradation (1987)

A relatively simple and sensitive procedure was developed to measure the concentration of peptides in rumen fluid. Feed particles and microorganisms were removed by centrifugation, and the supernatant was treated with perchloric acid (5% final concentration). Perchloric acid precipitated macromolecules that included protein, RNA, and DNA. Perchlorate was subsequently removed by precipitation with an excess of potassium carbonate. Ammonia was removed by boiling the alkaline sample. Supernatant samples were then analyzed for ninhydrin reactive material before and after HCl hydrolysis. Because ninhydrin reaction was 3 to 7.5 times greater after HCl hydrolysis, peptides rather than amino acids were the primary source of nonprotein, nonammonia nitrogen. Rumen fluid from a cow fed timothy hay and concentrate supplement (16% crude protein) contained more than 1200 mg peptides/L (192 mg N/L), 1 h after feeding, and this value declined the prefeeding value of 400 mg/L (64 mg N/L) by 8 h after feeding. Comparison of ninhydrin reactivity with and without HCl hydrolysis indicated that peptides present before feeding contained more peptide bonds than the peptides soon after feeding. High pressure liquid chromatography revealed a variety of peaks soon after feeding and fewer dominant peaks 8 h later. The data suggest that peptide uptake into rumen microorganisms can be a rate-limiting step in ruminal protein degradation.
Truncation Errors in the Spherical Harmonic Analysis of the Geomagnetic Field and the Problem of Downward Extrapolation (1964)

The problem of extrapolating the geomagnetic field to the core boundary is considered, and the problem of suppressing the concomitant amplification of errors is examined in some detail. It is proved that if the extrapolation is accomplished by spherical harmonic analysis, the familiar least squares (or χ2-minimization) process of deriving the harmonic coefficients is open to theoretical objections. An alternative method is proposed which evades these criticisms.
Rapid simultaneous analysis of prostaglandin E2, 12-hydroxyeicosatetraenoic acid and arachidonic acid using high performance liquid chromatography/electrospray ionization mass spectrometry (1997)

Arachidonic acid (AA) can be metabolized to a variety of lipid mediators including prostaglandins (PGE), and hydroxyeicosatetraenoic acids (HETE) by cyclooxygenase, lipoxygenase and cytochrome P450-dependent monooxygenase enzymatic pathways. Traditional experimental procedures to quantify these lipid mediators require purification, often by high performance liquid chromatography (HPLC), prior to derivatization for gas chromatography/mass spectrometry (GC/MS) analysis. This paper describes a rapid and simple technique for the simultaneous quantitative analysis of PGE2, 12-HETE, and AA by HPLC/electrospray ionization mass spectrometry on cultured human dermal fibroblast supernatants. Extension of the method to analyse 5-HETE and 15-HETE was investigated. The advantages of this method include minimal sample preparation and elimination of the problem associated with thermal stability for GC/MS analysis. A detection limit of 20pg on column for PGE2 and 5pg on column for 12-HETE and AA was determined.
Clinical experience gained from the use of 120 steatotic donor livers for orthotopic liver transplantation (2003)

Steatosis of the donor liver is known to impact on patient and allograft outcome after orthotopic liver transplantation (OLT). The aim of this study is to evaluate the effect of increasing grades of cadaveric donor liver steatosis on recipient outcome. Between January, 1986 and December, 2000, 120 OLTs were performed with 72 mild, 25 moderate, and 23 severe steatotic donor livers. Donors of steatotic livers were more likely to be older (P =.001) and have died of intracerebral haemorrhage than donors of nonsteatotic livers. Initial poor graft function (IPF) was more common in donor livers with either moderate or severe steatosis than in donor livers with mild steatosis (P =.03). Primary graft nonfunction (PNF) occurred in only 1 donor liver with severe steatosis. PGE1 (PGE1) usage was higher in recipients of donor livers with moderate or severe steatosis versus donor livers with mild steatosis (P =.001). Allograft loss was greater at 1 year both in the moderate and severe (P =.03) steatotic liver groups. Patient survival at 3 months and overall allograft survival both were impacted negatively by increasing grades of donor liver steatosis (P =.02, P =.03). Three-month allograft survival was reduced in the steatotic donor livers if the donor was 50+ years old (P =.033). Recipient status at OLT (P =.001) and donor steatosis (P =.046) impacted on 30 day allograft survival (multivariate analysis). In conclusion, increasing grades of donor liver steatosis were associated with worse IPF and increased PGE1 usage. There was a negative impact of steatosis on both recipient and early allograft survival.
SLC30A10 Is a Cell Surface-Localized Manganese Efflux Transporter, and Parkinsonism-Causing Mutations Block Its Intracellular Trafficking and Efflux Activity (2014)

Manganese (Mn) is an essential metal, but elevated cellular levels are toxic and may lead to the development of an irreversible parkinsonian-like syndrome that has no treatment. Mn-induced parkinsonism generally occurs as a result of exposure to elevated Mn levels in occupational or environmental settings. Additionally, patients with compromised liver function attributable to diseases, such as cirrhosis, fail to excrete Mn and may develop Mn-induced parkinsonism in the absence of exposure to elevated Mn. Recently, a new form of familial parkinsonism was reported to occur as a result of mutations in SLC30A10. The cellular function of SLC30A10 and the mechanisms by which mutations in this protein cause parkinsonism are unclear. Here, using a combination of mechanistic and functional studies in cell culture, Caenorhabditis elegans, and primary midbrain neurons, we show that SLC30A10 is a cell surface-localized Mn efflux transporter that reduces cellular Mn levels and protects against Mn-induced toxicity. Importantly, mutations in SLC30A10 that cause familial parkinsonism blocked the ability of the transporter to traffic to the cell surface and to mediate Mn efflux. Although expression of disease-causing SLC30A10 mutations were not deleterious by themselves, neurons and worms expressing these mutants exhibited enhanced sensitivity to Mn toxicity. Our results provide novel insights into the mechanisms involved in the onset of a familial form of parkinsonism and highlight the possibility of using enhanced Mn efflux as a therapeutic strategy for the potential management of Mn-induced parkinsonism, including that occurring as a result of mutations in SLC30A10.
Hallucinogenic Drugs in Psychiatric Research and Treatment Perspectives and Prospects (1995)

Clinical research with hallucinogens has resumed after a generation's hiatus. To place these new studies in context, this article reviews the history of hallucinogens' use and abuse, discusses their pharmacological properties, and highlights previous human studies. Research with lysergic acid diethylamide and related hallucinogens with thousands of patients and control subjects was associated with acceptable safety when subjects were carefully screened, supervised, and followed up. Data were generated regarding hallucinogens' psychopharmacology, overlap with endogenous psychoses, and psychotherapeutic efficacy. Current American and European studies emphasize systematic psychopharmacology, in addition to psychotherapy protocols. Human hallucinogen research will help define unique mind-brain interfaces, and provide mechanistic hypotheses and treatment options for psychiatric disorders. It is critical that human hallucinogen research in the 1990s make use of state of the art methodologies, or consensually define when modifications are required. Training and supervisory issues also must be explicitly addressed.
Electrical Stimulation of the Anterior Cingulate Cortex Reduces Responses of Rat Dorsal Horn Neurons to Mechanical Stimuli (2005)

The anterior cingulate cortex (ACC) is involved in the affective and motivational aspect of pain perception. Behavioral studies show a decreased avoidance behavior to noxious stimuli without change in mechanical threshold after stimulation of the ACC. However, as part of the neural circuitry of behavioral reflexes, there is no evidence showing that ACC stimulation alters dorsal horn neuronal responses. We hypothesize that ACC stimulation has two phases: a short-term phase in which stimulation elicits antinociception and a long-term phase that follows stimulation to change the affective response to noxious input. To begin testing this hypothesis, the purpose of this study was to examine the response of spinal cord dorsal horn neurons during stimulation of the ACC. Fifty-eight wide dynamic range spinal cord dorsal horn neurons from adult Sprague-Dawley rats were recorded in response to graded mechanical stimuli (brush, pressure, and pinch) at their respective receptive fields, while simultaneous stepwise electrical stimulations (300 Hz, 0.1 ms, at 10, 20, and 30 V) were applied in the ACC. The responses to brush at control, 10, 20, and 30 V, and recovery were 14.2 +/- 1.4, 12.3 +/- 1.2, 10.9 +/- 1.2, 10.3 +/- 1.1, and 14.1 +/- 1.4 spikes/s, respectively. The responses to pressure at control, 10, 20, and 30 V, and recovery were 39.8 +/- 4.7, 25.6 +/- 3.0, 25.0 +/- 3.0, 21.6 +/- 2.4, and 34.2 +/- 3.7 spikes/s, respectively. The responses to pinch at control, 10, 20, and 30 V, and recovery were 40.7 +/- 3.8, 30.6 +/- 3.1, 27.8 +/- 2.8, 27.2 +/- 3.2, and 37.4 +/- 3.9 spikes/s, respectively. We conclude that electrical stimulation of the ACC induces significant inhibition of the responses of spinal cord dorsal horn neurons to noxious mechanical stimuli. The stimulation-induced inhibition begins to recover as soon as the stimulation is terminated. These results suggest differential short-term and long-term modulatory effects of the ACC stimulation on nociceptive circuits.