gebhart/patrepeval huggingface dataset:
Forebrain patterning defects in <i>Small eye</i> mutant mice (1996)

Pax6 is a member of the Pax gene family of transcriptional regulators that exhibits a restricted spatiotemporal expression in the developing central nervous system, eye and nose. Mutations in Pax6 are responsible for inherited malformations in man, rat and mouse. To evaluate the role of Pax6 in forebrain development, we studied in detail mouse Small eye/Pax6 mutant brains. This analysis revealed severe defects in forebrain regions where Pax6 is specifically expressed. The establishment of some expression boundaries along the dorsoventral axis of the secondary prosencephalon is distorted and the specification of several ventral structures and nuclei is abolished. Specifically, the development of the hypothalamo-telencephalic transition zone and the ventral thalamus is distorted. Our detailed analysis included a comparison of the expression of Pax6, Dlx1 and several other genes during embryonic mouse brain development in wild-type and in the mutant Small eye (Sey) brain. The results from the analysis of normal brain development show that the restricted expression of Pax6 and Dlx1 at E12.5 dpc respect domains within the forebrain, consistent with the implications of the prosomeric model for the organisation of the forebrain (L. Puelles and J. L. R. Rubenstein (1993) Trends Neurosci. 16, 472-479). Furthermore, we found an early restriction of Pax6 and Dlx1 expression into presumptive histogenetic fields that correlate with the formation of distinct forebrain structures and nuclei. Our results are discussed in light of changes in adhesive properties in the Sey brain that might control segregation, assembly and cell migration of progenitors of specific forebrain regions.
Absorption of normal lymphocytes on allogeneic spleen monolayers: depletion of alloreactivity is due to inhibition of CTL induction by released monolayer cells. (1981)

A technique for the haplotype-specific depletion of precursors of alloreactive cytolytic T lymphocytes (CTL-P) by absorption of unprimed spleen cells on allogeneic lymphocyte monolayers has been examined. When H-2d spleen cells were incubated on monolayers of H-2b spleen cells and the nonadherent cells were cultured in mixed leukocyte culture (MLC), CTL activity generated against the monolayer haplotype was 30- to 1000-fold lower than the equivalent cultures of unabsorbed H-2d cells. Cytolytic reactvity to a 3rd-party haplotype, H-2k, was reduced no more than 6-fold. However, culture of the same cells at limiting dilution indicated that the frequency of CTL-P against the monolayer haplotype in monolayer-nonadherent H-2d populations was not significantly different from the frequency in normal H-2d spleen. It was noted that MLC of monolayer-nonadherent H-2d populations were highly cytolytic for H-2d target cells. This reaction was reduced and the ability to generate anti-H-2b CTL was restored when the nonadherent cells were treated with anti-H-2b antibody and complement to eliminate contaminating monolayer cells released during absorption, and when monolayers were prepared from spleen cells depleted of Lyt 2-bearing cells (and hence CTL-P). These data suggested that the reduction in anti-H-2b reactivity of monolayer-nonadherent cells in MLC was due to inhibition by the competing anti-H-2d reaction of contaminating, monolayer-derived CTL-P. Although fluorescent labeling of monolayer cells indicated that these cells represented only 10% of the nonadherent population, flow cytometry and further limiting dilution analysis demonstrated that cells that detached from H-2b monolayers during absorption were enriched 2-fold in T lymphocytes and CTL-P over normal spleen. The strength of the anti-H-2d reaction by a minority of monolayer cells can thus be attributed both to the higher frequency of H-2b anti-H-2d than H-2d anti-H-2b CTL-P in spleen populations and to the preferential detachment of monolayer T lymphocytes during absorption.
Synthesis of PMMA/Polysiloxane Core-Shell Latex (2015)

In this study, silicon-acrylic latex, consisting of poly (methyl methacrylate) (PMMA) as the core and modified polysiloxane as the shell, had been successfully synthesized via cationic emulsion polymerization. The structure of the silicon-acrylic latex was confirmed by means of DLS, FTIR and TGA. There was an increase of 24.74 nm in average particle size and a shift of the size distribution to large sizes for core-shell particles in comparison with the original PMMA core particles, which indicated the formation of core-shell structure. The typical absorption peaks of Si-O-Si and Si-O-C in infrared spectrum indicated that the hydroxyl groups on the PMMA surface had reacted with the silanol groups, which could be confirmed by heterogeneous two-component system form TGA test.
Controlling the density of the two-dimensional electron gas at the SrTiO<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msub><mml:mrow/><mml:mn>3</mml:mn></mml:msub></mml:math>/LaAlO<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msub><mml:mrow/><mml:mn>3</mml:mn></mml:msub></mml:math>interface (2012)

The polar discontinuity at the SrTiO${}_{3}$/LaAlO${}_{3}$ interface (STO/LAO) can in principle sustain an electron density of $3.3\ifmmode\times\else\texttimes\fi{}{10}^{14}$ cm${}^{\ensuremath{-}2}$ (0.5 electrons per unit cell). However, experimentally observed densities are more than an order of magnitude lower. Using a combination of first-principles and Schr\"odinger-Poisson simulations we show that the problem lies in the asymmetric nature of the structure, i.e., the inability to form a second LAO/STO interface that is a mirror image of the first, or to fully passivate the LAO surface. Our insights apply to oxide interfaces in general, explaining for instance why the SrTiO${}_{3}$/GdTiO${}_{3}$ interface has been found to exhibit the full density of $3.3\ifmmode\times\else\texttimes\fi{}{10}^{14}$ cm${}^{\ensuremath{-}2}$.
Why police and policing need GIS: an overview (2012)

This article provides an overview of major application areas of geographic information systems (GISs) in police departments and policing practices, mainly in the United States. It begins with a quick review of historical evolution of GIS applications in law enforcement from prototype computerized crime mapping to sophisticated spatial analysis and its integration in policing practices. Six major areas of GIS applications in police and policing are discussed with case studies to illustrate the value of GIS as (1) a partner for field officers, (2) a crime investigation and prevention tool, (3) a policy implementation and evaluation tool, (4) a police force planning tool, (5) a tool for testing crime theories, and (6) a communication tool. The article is concluded with an outlook for some emerging trends.
Toward Subgraph-Guided Knowledge Graph Question Generation with Graph Neural Networks (2020)

Knowledge graph (KG) question generation (QG) aims to generate natural language questions from KGs and target answers. Previous works mostly focus on a simple setting which is to generate questions from a single KG triple. In this work, we focus on a more realistic setting where we aim to generate questions from a KG subgraph and target answers. In addition, most of previous works built on either RNN-based or Transformer based models to encode a linearized KG sugraph, which totally discards the explicit structure information of a KG subgraph. To address this issue, we propose to apply a bidirectional Graph2Seq model to encode the KG subgraph. Furthermore, we enhance our RNN decoder with node-level copying mechanism to allow directly copying node attributes from the KG subgraph to the output question. Both automatic and human evaluation results demonstrate that our model achieves new state-of-the-art scores, outperforming existing methods by a significant margin on two QG benchmarks. Experimental results also show that our QG model can consistently benefit the Question Answering (QA) task as a mean of data augmentation.
MOS sampled data recursive filters using switched capacitor integrators (1977)

A new technique to analog sampled data filtering is presented which can be fully integrated using MOS technology. Advantages of this new approach are reduced circuit complexity, low sensitivity to coefficient variations, and efficient utilization of silicon area. Performance of monolithic low Q(Q=1) and high Q(Q=73) filters are presented which were implemented using NMOS technology. In implementing the high Q filter a new operational amplifier design was used which had a 14-V output range, rms noise voltage of 45 /spl mu/V, an open-loop gain of 6000, and a unity-gain bandwidth of 2 MHz.
MgADP Antagonism to Mg2+-independent ATP Binding of the Sulfonylurea Receptor SUR1 (1997)

Pancreatic beta-cell ATP-sensitive potassium (KATP) channels play an important role in the regulation of glucose-induced insulin secretion. The beta-cell KATP channel comprises two subunits, the sulfonylurea receptor SUR1, a member of the ATP-binding cassette (ABC) superfamily, and Kir6.2, a member of the inward rectifier K+ channel family. The activity of the KATP channel is under complex regulation by the intracellular ATP and ADP. To understand the roles of the two nucleotide-binding folds (NBFs) of SUR1 in the regulation of KATP channel activity, we introduced point mutations into the core consensus sequence of the Walker A or B motif of each NBF of SUR1 and characterized ATP binding and ADP or MgADP antagonism to it. SUR1 was efficiently photolabeled with 8-azido-[alpha-32P]ATP and 8-azido-[gamma-32P]ATP in the presence or absence of Mg2+ or vanadate. NBF1 mutations impaired ATP binding, but NBF2 mutations did not. MgADP strongly antagonized ATP binding, and the NBF2 mutation reduced MgADP antagonism. These results show that SUR1, unlike other ABC proteins, strongly binds ATP at NBF1 even in the absence of Mg2+ and that MgADP, through binding at NBF2, antagonizes the Mg2+-independent high affinity ATP binding at NBF1.
The von Hippel-Lindau Tumor Suppressor Gene Inhibits Hepatocyte Growth Factor/Scatter Factor-Induced Invasion and Branching Morphogenesis in Renal Carcinoma Cells (1999)

Loss of function in the von Hippel-Lindau (VHL) tumor suppressor gene occurs in familial and most sporadic renal cell carcinomas (RCCs). VHL has been linked to the regulation of cell cycle cessation (G(0)) and to control of expression of various mRNAs such as for vascular endothelial growth factor. RCC cells express the Met receptor tyrosine kinase, and Met mediates invasion and branching morphogenesis in many cell types in response to hepatocyte growth factor/scatter factor (HGF/SF). We examined the HGF/SF responsiveness of RCC cells containing endogenous mutated (mut) forms of the VHL protein (VHL-negative RCC) with that of isogenic cells expressing exogenous wild-type (wt) VHL (VHL-positive RCC). We found that VHL-negative 786-0 and UOK-101 RCC cells were highly invasive through growth factor-reduced (GFR) Matrigel-coated filters and exhibited an extensive branching morphogenesis phenotype in response to HGF/SF in the three-dimensional (3D) GFR Matrigel cultures. In contrast, the phenotypes of A498 VHL-negative RCC cells were weaker, and isogenic RCC cells ectopically expressing wt VHL did not respond at all. We found that all VHL-negative RCC cells expressed reduced levels of tissue inhibitor of metalloproteinase 2 (TIMP-2) relative to the wt VHL-positive cells, implicating VHL in the regulation of this molecule. However, consistent with the more invasive phenotype of the 786-0 and UOK-101 VHL-negative RCC cells, the levels of TIMP-1 and TIMP-2 were reduced and levels of the matrix metalloproteinases 2 and 9 were elevated compared to the noninvasive VHL-positive RCC cells. Moreover, recombinant TIMPs completely blocked HGF/SF-mediated branching morphogenesis, while neutralizing antibodies to the TIMPs stimulated HGF/SF-mediated invasion in vitro. Thus, the loss of the VHL tumor suppressor gene is central to changes that control tissue invasiveness, and a more invasive phenotype requires additional genetic changes seen in some but not all RCC lines. These studies also demonstrate a synergy between the loss of VHL function and Met signaling.
Local pH Measurement with Scanning Ion Conductance Microscopy (2013)

We report microscale pH probes and their application as a scanning probe in Scanning Ion Conductance Microscopy (SICM). Experiments are performed with electrodes that consist of a thin gold layer deposited on one side of a nanopipet. Subsequent insulation of the electrode with parylene and electropolymerization of aniline to form a polyaniline (PANi) thin film on the gold electrode surface creates a microscale pH probe with a dynamic range of pH 2.5–12 and sensitivity of 0.02 ΔpH. Porous membranes were examined with prepared electrodes. Ion current measured at the nanopipet opening served to control the position of the electrode with respect to the membrane surface and to report local conductance in the vicinity of the nanopipet, while local pH was measured by recording the potential difference between the PANi electrode and a reference electrode. Application of a transmembrane potential difference was utilized for additional control over migration across the membrane. Lateral resolution of the EMF response was studied with micrometer diameter pores. Additionally, the vertical resolution of the EMF response was studied as the pipet was lowered into the pores where a ΔpH of 0.13 was measured.
Elementary Statistics A Step by Step Approach (1998)

Elementary statistics : a step by step approach, is accompanied by a student solutions manual featuring solutions to odd-numbered exercises in the textbook. A student study guide is available and features understanding questions as well as chapter practice test.
Quality Management Issues in the Assisted Reproduction Laboratory (2010)

In the United States, the Clinical Laboratory Improvement Act (CLIA) of 1988 describes requirements and guidelines for implementing a quality control/quality assurance (QC/QA) program for moderate and high complexity laboratories. These requirements and guidelines apply to Assisted Reproductive Technology (ART) laboratories as well. The general topic of QC and QA as it pertains to in vitro fertilization (IVF) and embryo transfer (ET) is extensively reviewed. This review summarizes many of the QC and QA events that contribute to the advancement of knowledge in this biotechnological field. These events include control of the culture environment inside and outside of the incubator, as well as factors that affect culture media. This review also discusses, in considerable detail, the QC and the QA that pertain to equipment used within the laboratory and how to control for potential contaminants, which reside within the laboratory. This review provides evidence to indicate the need for laboratory personnel to monitor quality improvement issues on a continuous basis. Personnel must be willing to change as improvements in technology occur in order to meet the ever-evolving demands of a more difficult patient population. Suggestions for meeting these demands are offered.
Induction of caveolin during adipogenesis and association of GLUT4 with caveolin-rich vesicles. (1994)

Caveolae, also termed plasmalemmal vesicles, are small, flask-shaped, non-clathrin-coated invaginations of the plasma membrane. Caveolin is a principal component of the filaments that make up the striated coat of caveolae. Using caveolin as a marker protein for the organelle, we found that adipose tissue is the single most abundant source of caveolae identified thus far. Caveolin mRNA and protein are strongly induced during differentiation of 3T3-L1 fibroblasts to adipocytes; during adipogenesis there is also a dramatic increase in the complexity of the protein composition of caveolin-rich membrane domains. About 10-15% of the insulin-responsive glucose transporter GLUT4 is found in this caveolin-rich fraction, and immuno-isolated vesicles containing GLUT4 also contain caveolin. However, in non-stimulated adipocytes the majority of caveolin fractionates with the plasma membrane, while most GLUT4 associates with low-density microsomes. Upon addition of insulin to 3T3-L1 adipocytes, there is a significant increase in the amount of GLUT4 associated with caveolin-rich membrane domains, an increase in the amount of caveolin associated with the plasma membrane, and a decrease in the amount of caveolin associated with low-density microsomes. Caveolin does not undergo a change in phosphorylation upon stimulation of 3T3-L1 adipocytes with insulin. However, after treatment with insulin it is associated with a 32-kD phosphorylated protein. Caveolae thus may play an important role in the vesicular transport of GLUT4 to or from the plasma membrane. 3T3-L1 adipocytes offer an attractive system to study the function of caveolae in several cellular trafficking and signaling events.
G-CSF in Healthy Allogeneic Stem Cell Donors (2013)

Mobilization of peripheral blood stem cells (PBSC) in healthy volunteers with granulocyte colony-stimulating factor (G-CSF) is currently carried out at many institutions worldwide. This report presents the experience of the Dresden center regarding donor evaluation and mobilization schedule. Data regarding efficacy, short- and long-term safety of G-CSF treatment gained from 8290 PBSC collections in healthy donors are outlined. These results are discussed against the background of the available evidence from the literature. Although established as a standard procedure, G-CSF application to allogeneic donors will always be a very delicate procedure and requires the utmost commitment of all staff involved to ensure maximum donor safety.
A space-time process model for the evolution of DNA sequences. (1995)

We describe a model for the evolution of DNA sequences by nucleotide substitution, whereby nucleotide sites in the sequence evolve over time, whereas the rates of substitution are variable and correlated over sites. The temporal process used to describe substitutions between nucleotides is a continuous-time Markov process, with the four nucleotides as the states. The spatial process used to describe variation and dependence of substitution rates over sites is based on a serially correlated gamma distribution, i.e., an auto-gamma model assuming Markov-dependence of rates at adjacent sites. To achieve computational efficiency, we use several equal-probability categories to approximate the gamma distribution, and the result is an auto-discrete-gamma model for rates over sites. Correlation of rates at sites then is modeled by the Markov chain transition of rates at adjacent sites from one rate category to another, the states of the chain being the rate categories. Two versions of nonparametric models, which place no restrictions on the distributional forms of rates for sites, also are considered, assuming either independence or Markov dependence. The models are applied to data of a segment of mitochondrial genome from nine primate species. Model parameters are estimated by the maximum likelihood method, and models are compared by the likelihood ratio test. Tremendous variation of rates among sites in the sequence is revealed by the analyses, and when rate differences for different codon positions are appropriately accounted for in the models, substitution rates at adjacent sites are found to be strongly (positively) correlated. Robustness of the results to uncertainty of the phylogenetic tree linking the species is examined.
Systemic Delivery of Anti-miRNA for Suppression of Triple Negative Breast Cancer Utilizing RNA Nanotechnology (2015)

MicroRNAs play important roles in regulating the gene expression and life cycle of cancer cells. In particular, miR-21, an oncogenic miRNA is a major player involved in tumor initiation, progression, invasion and metastasis in several cancers, including triple negative breast cancer (TNBC). However, delivery of therapeutic miRNA or anti-miRNA specifically into cancer cells in vivo without collateral damage to healthy cells remains challenging. We report here the application of RNA nanotechnology for specific and efficient delivery of anti-miR-21 to block the growth of TNBC in orthotopic mouse models. The 15 nm therapeutic RNA nanoparticles contains the 58-nucleotide (nt) phi29 pRNA-3WJ as a core, a 8-nt sequence complementary to the seed region of miR-21, and a 39-nt epidermal growth factor receptor (EGFR) targeting aptamer for internalizing RNA nanoparticles into cancer cells via receptor mediated endocytosis. The RNase resistant and thermodynamically stable RNA nanoparticles remained intact after systemic injection into mice and strongly bound to tumors with little or no accumulation in healthy organs 8 h postinjection, and subsequently repressed tumor growth at low doses. The observed specific cancer targeting and tumor regression is a result of several key attributes of RNA nanoparticles: anionic charge which disallows nonspecific passage across negatively charged cell membrane; "active" targeting using RNA aptamers which increases the homing of RNA nanoparticles to cancer cells; nanoscale size and shape which avoids rapid renal clearance and engulfment by lung macrophages and liver Kupffer cells; favorable biodistribution profiles with little accumulation in healthy organs, which minimizes nonspecific side effects; and favorable pharmacokinetic profiles with extended in vivo half-life. The results demonstrate the clinical potentials of RNA nanotechnology based platform to deliver miRNA based therapeutics for cancer treatment.
25 nm Planar Bulk SONOS-type Memory with Double Tunnel Junction (2006)

25nm gate length bulk-planar SONOS-type memory, which has Si nanocrystalline layer between double tunnel oxides, shows excellent memory characteristics due to Coulomb blockade and quantum confinement in Si nanocrystals. A direct evidence of great advantage in trade-off between charge retention and w/e speed is shown experimentally, and it is shown that further device scaling and improvement are possible by Si nanocrystal size scaling. Double tunnel junction SONOS-type memory is a strong candidate in less than 25nm region
Enhancement of blue‐light‐emission properties for OLED displays by using a polarized light‐recycling structure (2008)

Abstract— The blue‐light‐emission properties of organic light‐emitting‐diode (OLED) displays must be enhanced to meet the requirements for color purity and luminous efficiency because few blue‐light‐emitting materials meet these requirements. This is particularly true for polymeric and phosphorescent light‐emitting materials. To attain the required purity and efficiency, a polarized‐light‐recycling structure for blue light that is called a blue enhanced circular polarizer (BECP) has been developed. The principle of the structure and the fabricated prototype device is described and it is shown that the structure increases blue‐light intensity and color purity, improves efficiency, provides a wide color gamut, and limits ambient‐light reflection.