gebhart/patrepeval huggingface dataset:
Classification of web-based email traffic in Thailand (2006)

Traditional works in traffic classification usually measure usage of mail applications by monitoring only SMTP, IMAP, and POP3 traffic. The shortcoming of such measurement is that it does not take into account Web-based email usage (Webmail) since the Webmail traffic is usually classified collectively as HTTP or Web traffic. The simple way to identify Webmail traffic is mapping source or destination IP address with URLs of Webmail providers (e.g. Hotmail, Yahoo!, and Gmail), is neither flexible nor accurate. The URL mapping technique cannot detect some related Webmail traffic such as advertising banners, pictures, and news, which are requested from other servers. In this paper we propose a technique to detect Webmail traffic from regular HTTP traffic by matching unique Webmail keywords in HTTP payload, in combination with TCP flow analysis. The significance of our method is that it can identify Webmail traffic missed by using the URL mapping alone, and can identify all packets associated with a TCP flow in both sending and receiving directions
A Generative Model for Zero Shot Learning Using Conditional Variational Autoencoders (2018)

Zero shot learning in Image Classification refers to the setting where images from some novel classes are absent in the training data but other information such as natural language descriptions or attribute vectors of the classes are available. This setting is important in the real world since one may not be able to obtain images of all the possible classes at training. While previous approaches have tried to model the relationship between the class attribute space and the image space via some kind of a transfer function in order to model the image space correspondingly to an unseen class, we take a different approach and try to generate the samples from the given attributes, using a conditional variational autoencoder, and use the generated samples for classification of the unseen classes. By extensive testing on four benchmark datasets, we show that our model outperforms the state of the art, particularly in the more realistic generalized setting, where the training classes can also appear at the test time along with the novel classes.
Atomistic Near-Field Nanoplasmonics: Reaching Atomic-Scale Resolution in Nanooptics (2015)

Electromagnetic field localization in nanoantennas is one of the leitmotivs that drives the development of plasmonics. The near-fields in these plasmonic nanoantennas are commonly addressed theoretically within classical frameworks that neglect atomic-scale features. This approach is often appropriate since the irregularities produced at the atomic scale are typically hidden in far-field optical spectroscopies. However, a variety of physical and chemical processes rely on the fine distribution of the local fields at this ultraconfined scale. We use time-dependent density functional theory and perform atomistic quantum mechanical calculations of the optical response of plasmonic nanoparticles, and their dimers, characterized by the presence of crystallographic planes, facets, vertices, and steps. Using sodium clusters as an example, we show that the atomistic details of the nanoparticles morphologies determine the presence of subnanometric near-field hot spots that are further enhanced by the action of the underlying nanometric plasmonic fields. This situation is analogue to a self-similar nanoantenna cascade effect, scaled down to atomic dimensions, and it provides new insights into the limits of field enhancement and confinement, with important implications in the optical resolution of field-enhanced spectroscopies and microscopies.
Artificial neural network applications in the calibration of spark-ignition engines: An overview (2016)

Emission legislation has become progressively tighter, making the development of new internal combustion engines very challenging. New engine technologies for complying with these regulations introduce an exponential dependency between the number of test combinations required for obtaining optimum results and the time and cost outlays. This makes the calibration task very expensive and virtually impossible to carry out. The potential use of trained neural networks in combination with Design of Experiments (DoE) methods for engine calibration has been a subject of research activities in recent times. This is because artificial neural networks, compared with other data-driven modeling techniques, perform better in satisfying a majority of the modeling requirements for engine calibration including the curse of dimensionality; the use of DoE for obtaining few measurements as practicable, with the aim of reducing engine calibration costs; the required flexibility that allows model parameters to be optimized to avoid overfitting; and the facilitation of automated online optimization during the engine calibration process that eliminates the need for user intervention. The purpose of this review is to give an overview of the various applications of neural networks in the calibration of spark-ignition engines. The identified and discussed applications include system identification for rapid prototyping, virtual sensing, use of neural networks as look-up table surrogates, emerging control strategies and On-Board Diagnostic (OBD) applications. The demerits of neural networks, future possibilities and alternatives were also discussed.
The nitric oxide/cyclic GMP pathway in organ transplantation: critical role in successful lung preservation. (1994)

Reestablishment of vascular homeostasis following ex vivo preservation is a critical determinant of successful organ transplantation. Because the nitric oxide (NO) pathway modulates pulmonary vascular tone and leukocyte/endothelial interactions, we hypothesized that reactive oxygen intermediates would lead to decreased NO (and hence cGMP) levels following pulmonary reperfusion, leading to increased pulmonary vascular resistance and leukostasis. Using an orthotopic rat model of lung transplantation, a porphyrinic microsensor was used to make direct in vivo measurements of pulmonary NO. NO levels measured at the surface of the transplanted lung plummeted immediately upon reperfusion, with levels moderately increased by topical application of superoxide dismutase. Because cGMP levels declined in preserved lungs after reperfusion, this led us to buttress the NO pathway by adding a membrane-permeant cGMP analog to the preservation solution. Compared with grafts stored in its absence, grafts stored with supplemental 8-Br-cGMP and evaluated 30 min after reperfusion demonstrated lower pulmonary vascular resistances with increased graft blood flow, improved arterial oxygenation, decreased neutrophil infiltration, and improved recipient survival. These beneficial effects were dose dependent, mimicked by the type V phosphodiesterase inhibitor 2-o-propoxyphenyl-8-azapurin-6-one, and inhibited by a cGMP-dependent protein kinase antagonist, the R isomer of 8-(4-chlorophenylthio)guanosine 3',5'-cyclic monophosphorothioate. Augmenting the NO pathway at the level of cGMP improves graft function and recipient survival following lung transplantation.
CGRP Receptor Antagonism and Migraine Therapy (2013)

Migraine is the most prevalent of the neurological disorders and can affect the patient throughout the lifetime. Calcitonin gene-related peptide (CGRP) is a neuropeptide that is expressed in the central and peripheral nervous systems. It is now 2 decades since it was proposed to be involved in migraine pathophysiology. The cranial sensory system contains C-fibers storing CGRP and trigeminal nerve activation and acute migraine attacks result in release of CGRP. The CGRP receptor consists of a complex of calcitonin receptor-like receptor (CLR), receptor activity-modifying protein 1 (RAMP1) and receptor component protein (RCP). At the central synapses in the trigeminal nucleus caudalis, CGRP acts postjunctionally on second-order neurons to transmit pain signals centrally via brainstem and midbrain to thalamus and higher cortical pain regions. CLR and RAMPs are widely expressed throughout the brain, in the trigeminal ganglion and in intracranial arteries. CGRP does not induce neurogenic inflammation or sensitization at peripheral meningeal sites but relays nociceptive information from trigeminal primary afferent neurons to the second-order neurons in the spinal trigeminal nucleus neurons. CGRP receptor antagonists have been developed as novel antimigraine drugs and found to be effective in the treatment of acute migraine attacks. Other ways to stop CGRP activity has been introduced recently through antibodies against CGRP and the CGRP receptor. While the CGRP receptors are expressed both in the CNS and at various places related to the trigeminal system the exact site of action for their therapy effect is still unresolved but the new approaches may resolve this.
Wood formation and the concept of wood quality (1969)

Wood has been the principal product of trees from the first hunting club or digging tool of ancient man to the rich variety of industrial and decorative uses of modern civilization. The universal practical value and aesthetic appeal of wood may be traced to the seemingly infinite variation in its characteristics. These variations arise from the structure and arrangement of the individual cells, which vary not only among tree species but also within individual trees. The variability in these wood characteristics is what I shall refer to as wood quality.
High β-Secretase Activity Elicits Neurodegeneration in Transgenic Mice Despite Reductions in Amyloid-β Levels (2005)

Amyloid-beta peptides (Abeta) are widely presumed to play a causal role in Alzheimer disease. Release of Abeta from the amyloid precursor protein (APP) requires proteolysis by the beta-site APP-cleaving enzyme (BACE1). Although increased BACE1 activity in Alzheimer disease brains and human (h) BACE1 transgenic (tg) mice results in altered APP cleavage, the contribution of these molecular alterations to neurodegeneration is unclear. We therefore used the murine Thy1 promoter to express high levels of hBACE1, with or without hAPP, in neurons of tg mice. Compared with hAPP mice, hBACE1/hAPP doubly tg mice had increased levels of APP C-terminal fragments (C89, C83) and decreased levels of full-length APP and Abeta. In contrast to non-tg controls and hAPP mice, hBACE1 mice and hBACE1/hAPP mice showed degeneration of neurons in the neocortex and hippocampus and degradation of myelin. Neurological deficits were also more severe in hBACE1 and hBACE1/hAPP mice than in hAPP mice. These results demonstrate that high levels of BACE1 activity are sufficient to elicit neurodegeneration and neurological decline in vivo. This pathogenic pathway involves the accumulation of APP C-terminal fragments but does not depend on increased production of human Abeta. Thus, inhibiting BACE1 may block not only Abeta-dependent but also Abeta-independent pathogenic mechanisms.
The pursuit of privacy (2013)

The concept of privacy is examined from a variety of standpoints: philosophical, sociological, and legal. The theory, nature, purpose, limits, and uses of privacy are considered. An alternative approach is proposed that seeks to clarify this confused and often incoherent concept. The numerous inquiries, reviews, and reports in respect of press conduct, as well as recent developments, especially in Britain, are described, including the background to and recommendations of the Leveson Inquiry Report in 2012. The apprehensions of the media concerning possible legal controls are examined.
Detection Performance in Clutter with Variable Resolution (1983)

Experiments were conducted to determine the influence of background clutter on target detection criteria. The experiment consisted of placing observers in front of displayed images on a TV monitor. Observer ability to detect military targets embedded in simulated natural and manmade background clutter was measured when there was unlimited viewing time. Results were described in terms of detection probability versus target resolution for various signal to clutter ratios (SCR). The experiments were preceded by a search for a meaningful clutter definition. The selected definition was a statistical measure computed by averaging the standard deviation of contiguous scene cells over the whole scene. The cell size was comparable to the target size. Observer test results confirmed the expectation that the resolution required for a given detection probability was a continuum function of the clutter level. At the lower SCRs the resolution required for a high probability of detection was near 6 line pairs per target (LP/TGT), while at the higher SCRs it was found that a resolution of less than 0.25 LP/TGT would yield a high probability of detection. These results are expected to aid in target acquisition performance modeling and to lead to improved specifications for imaging automatic target screeners.
Automated image analysis in histopathology: a valuable tool in medical diagnostics (2008)

Virtual pathology, the process of assessing digital images of histological slides, is gaining momentum in today's laboratory environment. Indeed, digital image acquisition systems are becoming commonplace, and associated image analysis solutions are viewed by most as the next critical step in automated histological analysis. Here, we document the advances in the technology, with reference to past and current techniques in histological assessment. In addition, the demand for these technologies is analyzed with major players profiled. As there are several image analysis software programs focusing on the quantification of immunohistochemical staining, particular attention is paid to this application in this review. Oncology has been a primary target area for these approaches, with example studies in this therapeutic area being covered here. Toxicology-based image analysis solutions are also profiled as these are steadily increasing in popularity, especially within the pharmaceutical industry. Reinforced by the phenomenal growth of the virtual pathology field, it is envisioned that the market for automated image analysis tools will greatly expand over the next 10 years.
A pharmacokinetic and pharmacodynamic study of intravenous vs oral artesunate in uncomplicated falciparum malaria (1998)

Despite rapid clearance of ARTS and DHA in patients with uncomplicated falciparum malaria, prompt parasite and fever clearance were achieved. High relative bioavailability of DHA following oral ARTS administration, and clinical outcomes comparable with those after i.v. ARTS, support the use of the oral formulation in the primary care setting.
Criteria for the Selection of Penetrating Hydrophobic Sealers Used in the Repair of Concrete Parking Decks (1990)

Deterioration of reinforced concrete building decks has developed into a multimillion dollar problem. Penetrating hydrophobic sealers and membrane coatings are available that seal the concrete surfaces and can slow or prevent deterioration. Field and laboratory tests can be used to determine whether or not application of hydrophobic sealers may be effective in limiting leakage and deterioration in trafficked concrete building decks, or if a membrane coating system is required. A typical program for this determination is discussed.
Design of Two-Stage Operational Amplifier using Indirect Feedback Frequency Compensation (2019)

This thesis work details the designing process of two silicon two-stage operational amplifiers with indirect feedback compensation and with Miller compensation technique. The main objective of this thesis is to study the advantages of indirect feedback compensation in comparison with Miller compensation and how this technique can be applied to meet certain design specifications. The operational amplifiers are designed with 130 nm Silicon Germanium CMOS process ideally for temperature range of 25°C to 300°C. The two op-amps are designed to have a DC gain of about 70 dB and 60 degrees of phase margin. The indirect feedback compensation design showed similar simulation results as the Miller compensation technique; nevertheless, it showed a reduce in the compensation capacitor size, meaning a smaller design area, and an improvement in the phase margin from the LHP zero. Also, the proposed design showed a higher unity gain frequency. Further analysis of indirect feedback frequency compensation on multistage amplifiers (greater than two) should be conducted to analyze the potential of this compensation method under more complex compensation against the commonly used Miller technique.
NINJA data analysis with a detection pipeline based on the Hilbert–Huang transform (2009)

The Ninja data analysis challenge allowed the study of the sensitivity of data analysis pipelines to binary black hole numerical relativity waveforms in simulated Gaussian noise at the design level of the LIGO observatory and the VIRGO observatory. We analyzed NINJA data with a pipeline based on the Hilbert Huang Transform, utilizing a detection stage and a characterization stage: detection is performed by triggering on excess instantaneous power, characterization is performed by displaying the kernel density enhanced (KD) time-frequency trace of the signal. Using the simulated data based on the two LIGO detectors, we were able to detect 77 signals out of 126 above SNR 5 in coincidence, with 43 missed events characterized by signal to noise ratio SNR less than 10. Characterization of the detected signals revealed the merger part of the waveform in high time and frequency resolution, free from time-frequency uncertainty. We estimated the timelag of the signals between the detectors based on the optimal overlap of the individual KD time-frequency maps, yielding estimates accurate within a fraction of a millisecond for half of the events. A coherent addition of the data sets according to the estimated timelag eventually was used in a characterization of the event.
Crystallographic studies of metal ion - DNA interactions: different binding modes of cobalt(II), copper(II) and barium(II) to N<sup>7</sup>of guanines in Z-DNA and a drug-DNA complex (1993)

Metal ion coordination to nucleic acids is not only required for charge neutralization, it is also essential for the biological function of nucleic acids. The structural impact of different metal ion coordinations of DNA helices is an open question. We carried out X-ray diffraction analyses of the interactions of the two transition metal ions Co(II) and Cu(II) and an alkaline earth metal ion Ba(II), with DNA of different conformations. In crystals, Co(II) ion binds exclusively at the N7 position of guanine bases by direct coordination. The coordination geometry around Co(II) is octahedral, although some sites have an incomplete hydration shell. The averaged Co-N7 bond distance is 2.3 A. The averaged Co-N7-C8 angle is 121 degrees, significantly smaller than the value of 128 degrees if the Co-N7 vector were to bisect the C5-N7-C8 bond angle. Model building of Co(II) binding to guanine N7 in B-DNA indicates that the coordinated waters in the axial positions would have a van der Waals clash with the neighboring base on the 5' side. In contrast, the major groove of A-DNA does not have enough room to accommodate the entire hydration shell. This suggests that Co(II) binding to either B-DNA or A-DNA may induce significant conformational changes. The Z-DNA structure of Cu(II)-soaked CGCGTG crystal revealed that the Cu(II) ion is bis-coordinated to N7 position of G10 and #G12 (# denotes a symmetry-related position) bases with a trigonal bipyramid geometry, suggesting a possible N7-Cu-N7 crosslinking mechanism. A similar bis-coordination to two guanines has also been seen in the interaction of Cu(II) in m5CGUAm5CG Z-DNA crystal and of Ba(II) with two other Z-DNA crystals.
Development of the Novel Biologically Targeted Anticancer Agent Gefitinib (2004)

The emergence of novel, biologically targeted anticancer agents such as gefitinib ('Iressa', ZD1839) has raised the question of how the dose for later-stage clinical development and clinical use is best determined. For cytotoxic drugs, because toxic effects and antitumor activity often fall within the same dose range and are dose dependent, the clinically used dose will depend on the therapeutic window. Therefore, the maximum tolerated dose identified in Phase I trials is typically used to determine the dose level for Phase II and III trials. However, because biologically targeted agents are expected to provide clinical benefits that are not predicted by surrogate end points of toxicity to normal replicating tissue, new Phase I trials have been designed to determine the optimum biological dose for use in further studies. A large, multifaceted Phase I program was designed to evaluate the pharmacokinetics, safety, efficacy, and targeted biological activity of a once-daily oral dose of gefitinib. The maximum tolerated dose was >or=700 mg/day, although doses as low as 150 mg/day provided (a). plasma concentrations sufficient for pharmacological activity, (b). evidence of targeted biological effect, and (c). antitumor activity. From these observations, two large Phase II trials ('Iressa' Dose Evaluation in Advanced Lung Cancer 1 and 2) evaluated 250- and 500-mg/day doses of gefitinib in patients with advanced non-small cell lung cancer (NSCLC). As predicted from the Phase I trials, doses >250 mg/day provided no additional efficacy benefit, whereas adverse effects increased in a dose-dependent manner. Consequently, the recommended dose of gefitinib in NSCLC is 250 mg/day. The early clinical trial development of gefitinib provides a model for the development of novel, noncytotoxic anticancer agents.
Autologous Umbilical Cord Blood Transfusion in Very Young Children With Type 1 Diabetes (2009)

Autologous umbilical cord blood transfusion in children with type 1 diabetes is safe but has yet to demonstrate efficacy in preserving C-peptide. Larger randomized studies as well as 2-year postinfusion follow-up of this cohort are needed to determine whether autologous cord blood-based approaches can be used to slow the decline of endogenous insulin production in children with type 1 diabetes.
Identification and Characterization of the <i>dif</i> Site from <i>Bacillus subtilis</i> (2001)

Bacteria with circular chromosomes have evolved systems that ensure multimeric chromosomes, formed by homologous recombination between sister chromosomes during DNA replication, are resolved to monomers prior to cell division. The chromosome dimer resolution process in Escherichia coli is mediated by two tyrosine family site-specific recombinases, XerC and XerD, and requires septal localization of the division protein FtsK. The Xer recombinases act near the terminus of chromosome replication at a site known as dif (Ecdif). In Bacillus subtilis the RipX and CodV site-specific recombinases have been implicated in an analogous reaction. We present here genetic and biochemical evidence that a 28-bp sequence of DNA (Bsdif), lying 6 degrees counterclockwise from the B. subtilis terminus of replication (172 degrees ), is the site at which RipX and CodV catalyze site-specific recombination reactions required for normal chromosome partitioning. Bsdif in vivo recombination did not require the B. subtilis FtsK homologues, SpoIIIE and YtpT. We also show that the presence or absence of the B. subtilis SPbeta-bacteriophage, and in particular its yopP gene product, appears to strongly modulate the extent of the partitioning defects seen in codV strains and, to a lesser extent, those seen in ripX and dif strains.