gebhart/patrepeval huggingface dataset:
The Effects of Short-Term Nifedipine Treatment on Responsiveness of Aortic Rings of Cadmium-Hypertensive Rats (1999)

The effects of short-term antihypertensive treatment with nifedipine on blood pressure and vascular responsiveness were studied in cadmium-hypertensive and normotensive control rats. Cadmium administration caused a significant increase in mean arterial blood pressure. Endothelin-1, noradrenaline and angiotensin II produced concentration dependent contractions of aortic rings that attained a lower maximal contraction in cadmium-hypertensive rats. Responses of aortic rings to KCl did not show a significant difference between the groups. Nifedipine administered simultaneously with cadmium inhibited the induction of hypertension. Nifedipine treatment for 5 days significantly reduced the blood pressure in cadmium-hypertensive and normotensive rats. Neither inhibition of hypertension nor normalization of blood pressure in cadmium-hypertensive rats caused an alteration in contractile responses of aortic rings to vasoconstrictors which suggested that development of decreased vascular reactivity and of hypertension occurs simultaneously in cadmium-hypertensive rats but the role of decreased vascular reactivity in maintenance of hypertension is questionable in cadmium-hypertension.
Manufacturing implementation of 32nm SRAM using ArF immersion with RET (2008)

As the pattern size shrinking down below 1/4 of the exposure wavelength, the NA of exposure tool has to be increased proportionally. The use of hyper NA and immersion exposure system for improving image quality may result in a small workable process window. Hence, resolution enhancement technology (RET) becomes a necessity for semiconductor manufacturing. Previous studies have demonstrated many RETs, such as CPL, DDL, IML and DPT etc. can improve the process window for different applications.1,2,3,4 In this work, we show manufacturing implementation of a 32nm node SRAM cell with different RET approaches. The diffusion, poly, contact, and metal layers were chosen as the target design. The process development project starts from the wafer exposure scheme setting, which includes the multi-exposure, illumination shape and mask type. After the RET has been specified, the process performance indexes, such as MEEF, PW, and CDU are characterized by using both simulation and empirical data. The mask design and OPC is implemented After the mask data preparation step, we then optimize exposure parameters for best printing performance and follow it by verifying actual wafer data. The mask making spec and DFM design rule constrains have been assessed and recommended for 32nm node manufacturing. Also, we have examined the immersion process defect impact and control methodology for production environment. In this paper, we report the result of optimizing RET process (including mask data generation, reticle making specifications, and wafer printing) for 32nm SRAM. With 193nm ultra high NA immersion exposure scanner (such as ASML /1900), it is capable of meeting 32nm SRAM manufacturing requirement.
[Clinical therapeutic effect and biological monitoring of p53 gene in advanced hepatocellular carcinoma]. (2010)

p53 gene sequential infusion via hepatic artery is effective for advanced hepatocellular carcinoma. The biological study will play a important role in selecting the therapeutic dose and judging therapeutic efficacy by means of guiding and monitoring.
Ability to organize microtubules in taxol-treated mitotic PtK2 cells goes with the SPN antigen and not with the centrosome (1992)

The SPN antigen plays an essential role in mitosis, since microinjection of antibodies causes mitotic arrest. Here we show, by examination of the relative locations of SPN antigen, the centrosomal 5051 antigen and tubulin in normal mitotic, and in taxol-treated mitotic cells, that the SPN antigen is involved in organizing the microtubules of the spindle. The 210 kDa protein defined as SPN antigen relocates from the nuclear matrix to the centrosome at prophase, remains associated with the poles at metaphase and anaphase, and dissociates from the centrosomes in telophase. In taxol-treated mitotic cells, SPN staining shows a striking redistribution while 5051 antigen remains associated with centrosomes. SPN antigen is seen at the plasma membrane end of the rearranged microtubules. SPN antigen is always at the center of the multiple microtubule asters (5 to 20 per cell) induced by taxol, whereas 5051 again remains associated with the centrosomal complex (1 to 2 foci per cell). Microtubule nucleation is associated with the SPN antigen rather than with the 5051 antigen. Microinjection of SPN-3 antibody into taxol-treated mitotic PtK2 cells causes disruption of the asters as judged by tubulin staining of the same cells. Finally, SPN antigen extracted in soluble form from synchronized mitotic HeLa cells binds to, and sediments with, pig brain microtubules stabilized by taxol. This association of SPN antigen with microtubules is partially dissociated by 0.5 M NaCl but not by 5 mM ATP. Thus SPN antigen binds to microtubules in vitro and seems to act as a microtubular minus-end organizer in mitotic cells in vivo.
Exploiting thread-level parallelism on simultaneous multithreaded processors (1998)

This dissertation investigates techniques for promoting constructive sharing and efficient utilization of processor resources on simultaneous multithreaded processors. Simultaneous multithreading is an architecture that permits multiple threads to issue multiple instructions to the functional units each cycle. By dynamically sharing processor resources both temporally and physically, simultaneous multithreading can avoid the resource partitioning and inflexibility that plague other parallel architectures. While
mtDNA and the origin of Caucasians: identification of ancient Caucasian-specific haplogroups, one of which is prone to a recurrent somatic duplication in the D-loop region. (1994)

mtDNA sequence variation was examined in 175 Caucasians from the United States and Canada by PCR amplification and high-resolution restriction-endonuclease analysis. The majority of the Caucasian mtDNAs were subsumed within four mtDNA lineages (haplogroups) defined by mutations that are rarely seen in Africans and Mongoloids. The sequence divergence of these haplogroups indicates that they arose early in Caucasian radiation and gave raise to modern European mtDNAs. Although ancient, none of these haplogroups is old enough to be compatible with a Neanderthal origin, suggesting that Homo sapiens sapiens displaced H. s. neanderthaliensis, rather than mixed with it. The mtDNAs of one of these haplogroups have a unique homoplasmic insertion between nucleotide pair (np) 573 and np 574, within the D-loop control region. This insertion makes these mtDNAs prone to a somatic mutation that duplicates a 270-bp portion of the D-loop region between np 309 and np 572. This finding suggests that certain nonpathogenic mtDNA mutations could predispose individuals to mtDNA rearrangements.
Single-Channel Analyzer (1951)

A single-channel analyzer has been built for measuring the pulse spectrum from proportional and scintillation counters; it counts the number of pulses whose heights lie between E and E+ΔE. The interval ΔE or ``window width'' is constant within ±1.2 percent for all values of E between zero and ninety volts. Curves are presented which show that the analyzer performs satisfactorily on the random distribution of pulse amplitudes obtained from counters.
tPA Helpers in the Treatment of Acute Ischemic Stroke: Are They Ready for Clinical Use? (2019)

Tissue plasminogen activator (tPA) is the only therapeutic agent approved to treat patients with acute ischemic stroke. The clinical benefits of tPA manifest when the agent is administered within 4.5 hours of stroke onset. However, tPA administration, especially delayed administration, is associated with increased intracranial hemorrhage (ICH), hemorrhagic transformation (HT), and mortality. In the ischemic brain, vascular remodeling factors are upregulated and microvascular structures are destabilized. These factors disrupt the blood brain barrier (BBB). Delayed recanalization of the vessels in the presence of relatively matured infarction appears to damage the BBB, resulting in HT or ICH, also known as reperfusion injury. Moreover, tPA itself activates matrix metalloproteases, further aggravating BBB disruption. Therefore, attenuation of edema, HT, or ICH after tPA treatment is an important therapeutic strategy that may enable clinicians to extend therapeutic time and increase the probability of excellent outcomes. Recently, numerous agents with various mechanisms have been developed to interfere with various steps of ischemia/ reperfusion injuries or BBB destabilization. These agents successfully reduce infarct volume and decrease the incidence of ICH and HT after delayed tPA treatment in various animal stroke models. However, only some have entered into clinical trials; the results have been intriguing yet unsatisfactory. In this narrative review, I describe such drugs and discuss the problems and future directions. These "tPA helpers" may be clinically used in the future to increase the efficacy of tPA in patients with acute ischemic stroke.
ADAMTS-13 Metalloprotease Interacts with the Endothelial Cell-derived Ultra-large von Willebrand Factor (2003)

Thrombotic thrombocytopenic purpura is caused by congenital or acquired deficiency of ADAMTS-13, a metalloprotease that cleaves the endothelium-derived ultra-large multimers of von Willebrand factor (ULVWF). The proteolysis converts hyper-reactive and thrombogenic ULVWF into smaller and less adhesive plasma forms. Activity of ADAMTS-13 is usually measured in a static system under non-physiological conditions that require protein denaturation and prolonged incubation. We have demonstrated previously that ULVWF multimers, upon release from endothelial cells, form platelet-decorated string-like structures that are rapidly cleaved by ADAMTS-13. Here we report the direct interaction between ADAMTS-13 and VWF under both static and flowing conditions. ADAMTS-13-coated beads adhered to both immobilized VWF and ULVWF strings presented by stimulated endothelial cells. These beads adhered to VWF under both venous (2.5 dynes/cm2) and arterial (30 dynes/cm2) shear stresses. We then demonstrated that ADAMTS-13 beads adhered to immobilized recombinant VWF-A1 and -A3 domains, but soluble metalloprotease bound preferentially to the A3 domain, suggesting that the VWF A3 domain may be the primary docking site for the metalloprotease. We suggest that tensile stresses imposed by fluid shear stretch endothelial bound ULVWF multimers to expose binding sites within the A domains for circulating ADAMTS-13. The bound enzyme then cleaves within the A2 domain that lies in close proximity and releases smaller VWF multimers into the plasma. Once released, these cleaved VWF fragments become inaccessible for the metalloprotease to prevent further cleavage.
Characterization of a Simian Human Immunodeficiency Virus Encoding the Envelope Gene from the CCR5-Tropic HIV-1 Ba-L (2003)

The tat, rev, vpu, and env genes from the monocytotropic CCR5-dependent HIV-1 Ba-L isolate were substituted for homologous simian immunodeficiency virus (SIV) sequences in the SIV genome. The resultant SHIV (SHIV Ba-L) replicated in CCR5-positive PM-1 cells but not in CCR5-negative CEMX174 cells. Infection of HOS cells expressing different co-receptors showed SHIV Ba-L to be strictly CCR5-dependent. Infection of PM-1 cells and rhesus peripheral blood mononuclear cells (PBMCs) was highly sensitive to RANTES but not to SDF-1. Although SHIV Ba-L infected rhesus and pigtail macaques intravenously or rectally, plasma viremia was controlled after 3 weeks. After serial passage through 4 pigtails by blood and bone marrow transfer, virus from pigtail PBMCs had higher in vitro infectious titers on rhesus PBMCs and was efficiently transmitted vaginally in rhesus and cynomolgus macaques. Plasma viremia generally persisted longer than after infection with unpassaged virus but was eventually controlled with no significant decrease in CD4+ T-cell counts in peripheral blood. The envelope gene of SHIV Ba-L revealed a very little genetic drift during in vivo passage. SHIV Ba-L provides a potentially useful model for R5 HIV-1 infection of humans.
Measurement of Particle-Fluid Velocities of a Particle Containing Fluid Flow in a Grooved Channel (2005)

A novel method for simultaneously measuring the fluid velocity and the large particle velocity in a particlecontaining fluid flow is developed in this study. In this method, the velocities of the fluid and the large particle are measured by PIV and PTV, respectively, from the same flow images taken by a single CCD camera. Since a PIV result represents the average displacement of all the particles in an interrogation window, it will include an error caused by the relative displacement of the large particles as compared with the fluid. In order to reduce the false influence from large particles on the PIV calculation, the mean brightness of small PIV particle images is substituted for the locations of large particles in the PIV images. The simulation results showed that the new method can significantly reduce the PIV error caused by the large particles. The newly developed method is also applied to an actual case of the particle-containing fluid flow in a triangular grooved channel. In this case, the large particles flowing into the groove slow down gradually and eventually deposit on the groove surface, while the fluid in the groove rotates to form a steady vortex. Regardless of the velocity difference between the particles and the fluid, the fluid velocity can be measured correctly employing the novel method. The new method can be applied to the investigation of particulate fouling problems.
Fast slit-beam extraction and chopping for neutron generator (2006)

High-intensity fast white neutron pulses are needed for pulsed fast neutron transmission spectroscopy (PFNTS). A compact tritium–tritium fusion reaction neutron generator with an integrated ion beam chopping system has been designed, simulated, and tested for PFNTS. The design consists of a toroidal plasma chamber with 20 extraction slits, concentric cylindrical electrodes, chopper plates, and a central titanium-coated beam target. The total ion beam current is 1A. The beam chopping is done at 30keV energy with a parallel-plate deflector integrated with an Einzel lens. Beam pulses with 5ns width can be achieved with a 15ns rise/fall time ±1500V sweep on the chopper plates. The neutrons are produced at 120keV energy. A three-dimensional simulation code based on Vlasov iteration was developed for simulating the ion optics of this system. The results with this code were found to be consistent with other simulation codes. So far we have measured 50ns ion beam pulses from the system.
1244 Symptomatic Patients Suspected of Eosinophilic Gastritis and/or Enteritis Have Elevated Mucosal Mast Cell Counts Without Eosinophilia: A New Diagnostic Entity? (2019)

INTRODUCTION: Eosinophilic gastrointestinal diseases (EGIDs) are a set of inflammatory diseases subclassified according to the site(s) of abnormal accumulation of eosinophils (eos) in the gastrointestinal (GI) tract such as eosinophilic esophagitis (EoE), gastroenteritis (EGE), and colitis. These conditions often decrease quality of life due to debilitating symptoms. While the pathogenesis of EGIDs is primarily thought to be driven by eos, there is increasing evidence for the involvement of mast cells (MCs). AIM: To characterize symptomatic patients (pts) with suspected EG/EGE who did not meet histopathologic entry criteria for mucosal eosinophilia for a Phase 2 randomized, double-blind, placebo-controlled study of AK002, an anti-Siglec-8 antibody. METHODS: To undergo screening endoscopy for this study, pts were required to report an average symptom score ≥3 (0 to 10 scale) for abdominal pain, nausea, and/or diarrhea on a daily patient-reported outcome questionnaire for ≥2 weeks and have no other known cause for GI symptoms. During the screening endoscopy, biopsies were systematically obtained from the stomach and duodenum, and read by a single pathologist. Eos counts (eos/hpf; hpf area = 0.237 mm 2 ) were assessed on H&E slides. To quantify MCs, immunohistochemistry for tryptase was performed. We quantified eos and MCs in the stomach and duodenum. Histopathologic entry criteria for the randomized study was ≥30 eos/hpf in 5 hpfs in the stomach (EG) and/or ≥30 eos/hpf in 3 hpfs in the duodenum (EGE). A literature review was conducted to determine normal MC counts in the GI tract. RESULTS: Eighty-eight pts underwent screening endoscopy based upon suspected EG/EGE and active symptoms, and 72 pts met histopathologic eos criteria. All pts whose eos did not meet entry criteria (n = 16) were found to have elevated MC counts (Figure 1; reported normal range = 12-19 MCs/hpf). In these pts, the mean gastric eos count was 6 eos/hpf in 5 hpfs and mean duodenal eos count was 15 eos/hpf in 3 hpfs. In contrast, these pts exhibited a mean gastric MC count of 47 MC/hpf in 5 hpfs and a mean duodenal MC count of 49 MC/hpf in 3 hpfs. Almost all symptomatic pts screened (87/88; 99%) had elevated MC counts. CONCLUSION: Data from this large randomized EG/EGE study showed that symptomatic pts with suspected EG/EGE had increased mucosal MCs with or without mucosal eosinophilia. These data suggest that MCs may play a role in pts with suspected EG/EGE and raise the possibility of a unique clinical presentation driven by MCs.
The use of recombinant cytokines for enhancing immunohematopoietic reconstitution following bone marrow transplantation. I. Effects of in vitro culturing with IL-3 and GM-CSF on human and mouse bone marrow cells purged with mafosfamide (ASTA-Z). (1989)

Enhanced colony formation (CFU-GM) in vitro was observed in murine and human bone marrow (BM) cells following pre-incubation for 2-3 days with recombinant murine GM-CSF or natural purified murine IL-3, and recombinant human GM-CSF or IL-3, respectively. Pre-incubation in the presence of both GM-CSF and IL-3 produced additive stimulatory effects. BM cells previously treated in vitro with mafosfamide (ASTA-Z) under conditions identical to those used in the purging of autologous BM grafts, also demonstrated an enhanced cumulative response to combinations of GM-CSF and IL-3, with up to 100-fold increase in CFU-GM as compared with controls (p less than 0.001). In mice, the number of CFU-S was also significantly increased (2-20 times) following incubation of unpurged and purged BM cells in murine IL-3 and/or GM-CSF. Interestingly, the frequency of both CFU-GM and CFU-S in BM cells first purged with ASTA-Z and then cultured with both cytokines was significantly higher (p less than 0.01) than that in fresh, intact BM cells. In addition, mice transplanted with unpurged or purged, cytokine cultured syngeneic BM cells exhibited a significantly (p less than 0.01) earlier reconstitution of peripheral white blood cells and of BM CFU-GM, and a significantly enhanced anti-sheep red blood cell plaque-forming cell response. Overall, the data suggest that it might be possible to enhance immunohematopoietic reconstitution in recipients of unmanipulated, as well as ASTA-Z purged autologous BM following short-term culture of BM cells with recombinant colony stimulating factors prior to bone marrow transplantation.
Review 2: "Cytotoxic lymphocytes are dysregulated in multisystem inflammatory syndrome in children" (2020)

This study compares transcriptomes from patients afflicted with MIS-C, a condition resulting from COVID-19, with other pediatric disorders and finds MIS-C shares a similar molecular etiology to Kawasaki Disease. Reviewers found the claims unsubstantiated and greatly misleading.
Learning Across Scales---Multiscale Methods for Convolution Neural Networks (2018)

In this work, we establish the relation between optimal control and training deep Convolution Neural Networks (CNNs). We show that the forward propagation in CNNs can be interpreted as a time-dependent nonlinear differential equation and learning can be seen as controlling the parameters of the differential equation such that the network approximates the data-label relation for given training data. Using this continuous interpretation, we derive two new methods to scale CNNs with respect to two different dimensions. The first class of multiscale methods connects low-resolution and high-resolution data using prolongation and restriction of CNN parameters inspired by algebraic multigrid techniques. We demonstrate that our method enables classifying high-resolution images using CNNs trained with low-resolution images and vice versa and warm-starting the learning process. The second class of multiscale methods connects shallow and deep networks and leads to new training strategies that gradually increase the depths of the CNN while re-using parameters for initializations.
Unfolding the event landscape on twitter (2012)

Social media platforms such as Twitter garner significant attention from very large audiences in response to real-world events. Automatically establishing who is participating in information production or conversation around events can improve event content consumption, help expose the stakeholders in the event and their varied interests, and even help steer subsequent coverage of an event by journalists. In this paper, we take initial steps towards building an automatic classifier for user types on Twitter, focusing on three core user categories that are reflective of the information production and consumption processes around events: organizations, journalists/media bloggers, and ordinary individuals. Exploration of the user categories on a range of events shows distinctive characteristics in terms of the proportion of each user type, as well as differences in the nature of content each shared around the events.
The mouse dorsal skinfold chamber as a model for the study of thrombolysis by intravital microscopy (2012)

Although intravital microscopy models of thrombosis in mice have contributed to dissect the mechanisms of thrombus formation and stability, they have not been well adapted to study long-term evolution of occlusive thrombi. Here, we assessed the suitability of the dorsal skinfold chamber (DSC) for the study of thrombolysis and testing of thrombolytic agents by intravital microscopy. We show that induction of FeCl3-induced occlusive thrombosis is achievable in microvessels of DSCs, and that thrombi formed in DSCs can be visualised by intravital microscopy using brightfield transmitted light, or fluorescent staining of thrombus components such as fibrinogen, platelets, leukocytes, and von Willebrand factor. Direct application of control saline or recombinant tissue-plasminogen activator (rtPA) to FeCl3-produced thrombi in DSCs did not affect thrombus size or induce recanalisation. However, in the presence of hirudin, rtPA treatment caused a rapid dose-dependent lysis of occlusive thrombi, resulting in recanalisation within 1 hour after treatment. Skin haemorrhage originating from vessels located inside and outside the FeCl3-injured area was also observed in DSCs of rtPA-treated mice. We further show that rtPA-induced thrombolysis was enhanced in plasminogen activator inhibitor-1-deficient (PAI-1-/-) mice, and dropped considerably as the time between occlusion and treatment application increased. Together, our results show that by allowing visualization and measurement of thrombus lysis and potential bleeding complications of thrombolytic treatments, the DSC provides a model for studying endogenous fibrinolysis and for first-line screening of thrombolytic agents. Furthermore, using this system, we found that thrombin and clot aging impair the thrombolytic action of rtPA towards FeCl3-produced thrombi.