gebhart/patrepeval huggingface dataset:
Neuronal Life-and-Death Signaling, Apoptosis, and Neurodegenerative Disorders (2006)

When subjected to excessive oxidative stress, neurons may respond adaptively to overcome the stress, or they may activate a programmed cell death pathway called apoptosis. Apoptosis is characterized by alterations in mitochondria and the endoplasmic reticulum and activation of cysteine proteases called caspases. Increasing evidence suggests that apoptotic biochemical cascades are involved in the dysfunction and death of neurons in neurodegenerative disorders such as Alzheimer's, Parkinson, and Huntington's diseases. Studies of normal aging, of genetic mutations that cause disease, and of environmental factors that affect disease risk are revealing cellular and molecular alterations that may cause excessive oxidative stress and trigger neuronal apoptosis. Accumulation of self-aggregating proteins such as amyloid beta-peptide, tau, alpha-synuclein, and huntingtin may be involved in apoptosis both upstream and downstream of oxidative stress. Membrane-associated oxidative stress resulting in perturbed lipid metabolism and disruption of cellular calcium homeostasis may trigger apoptosis in several different neurodegenerative disorders. Counteracting neurodegenerative processes are an array of mechanisms including neurotrophic factor signaling, antioxidant enzymes, protein chaperones, antiapoptotic proteins, and ionostatic systems. Emerging findings suggest that the resistance of neurons to death during aging can be enhanced by modifications of diet and lifestyle.
Calmodulin-binding domains from isozymes of the plasma membrane Ca2+ pump have different regulatory properties (1991)

Peptides C28R2 and C28R1A, representing the two main alternative classes of calmodulin-binding domains from the plasma membrane Ca2+ pump, were tested for their calmodulin-binding properties and for their capacity to interact with pump from which the calmodulin-binding domain had been removed by chymotryptic proteolysis. Peptide C28R2 was more effective in both capacities. Binding of peptide to calmodulin was measured by competition experiments. Such experiments indicated that Ki for C28R2 as an inhibitor of the pump-calmodulin interaction was 0.1 nM, whereas C28R1A had a Ki of 1 nM. Interaction of peptide with chymotryptically activated Ca2+ pump was measured by observing the inhibition by peptide of active Ca2+ transport into inside-out membrane vesicles at low Ca2+. Those experiments showed that C28R2 interacted relatively strongly (an IC50 of 1 microM), whereas C28R1A had an IC50 of 15 microM. The calmodulin-binding peptides had effects on both the K1/2 for Ca2+ and the Vmax of the proteolyzed pump. The effects on the K1/2 for Ca2+ were related to the net plus charge on the peptide, with the most positive peptides being most effective in competing with Ca2+. The substantial differences between C28R2 and C28R1A suggest that Ca2+ pumps containing calmodulin-binding domains like C28R1A have lower calmodulin affinities and higher activities in the absence of activator.
Root Physiological Characteristics Associated with Drought Resistance in Tall Fescue Cultivars (2000)

Knowledge of root traits associated with drought tolerance is important for further understanding drought tolerance mechanisms of the whole plant. The experiment was designed to investigate effects of drought stress on root physiological activities of six cultivars (Kentucky‐31, Falcon II, Houndog V, Phoenix, Rebel Jr., and Bonsai) of tall fescue ( Festuca arundinacea Schreb.) varying in drought resistance. Grasses were grown in well‐watered or drying (nonirrigated) soil for 35 d in a greenhouse. Drying reduced root length and dry mass in the 0‐ to 20‐cm layer for all six cultivars. Root length and dry mass in the 40‐ to 60‐cm layer was enhanced for Houndog V, Falcon II, and Kentucky‐31; was not affected for Phoenix and Bonsai; and was reduced for Rebel Jr. by soil drying. Water uptake rates for Falcon II and Kentucky‐31 decreased with soil drying in the 0‐ to 20‐cm layer but increased in the 40‐ to 60‐cm layer. Soil drying limited water uptake by Rebel Jr. in both layers. Drought stress increased root mortality in the 0‐ to 20‐, 20‐ to 40‐, and 40‐ to 60‐cm layers, but the increase was most dramatic in the surface soil layer. The increase in root mortality in each soil layer was most severe for Rebel Jr. and least severe for Kentucky‐31. Root death of tall fescue cultivars during drought was positively correlated with root desiccation, as evidenced by severe leakage of organic solutes from roots in drying soil. Carbohydrate supply to roots was not a contributor to root death during drought stress. This was supported by the increased or unaffected total nonstructural carbohydrates in both shoots and roots, and the increased C allocation to roots under soil drying conditions.
5 Quantum Zeno effect by general measurements (2008)

It was predicted that frequently repeated measurements on an unstable state may alter the decay rate of the state. This is called the quantum Zeno effect (QZE) or the anti-Zeno effect (AZE), depending on whether the decay is suppressed or enhanced. In conventional theories of the QZE and AZE, effects of measurements are simply described by the projection postulate, assuming that each measurement is an instantaneous and ideal one. However, real measurements are not instantaneous and ideal. For the QZE and AZE by such general measurements, interesting and surprising features have recently been revealed, which we review in this article. The results are based on the quantum measurement theory, which is also reviewed briefly. As a typical model, we consider a continuous measurement of the decay of an excited atom by a photodetector that detects a photon emitted from the atom upon decay. This measurement is an indirect negative-result one, for which the curiosity of the QZE and AZE is emphasized. It is shown that the form factor is renormalized as a backaction of the measurement, through which the decay dynamics is modified. In a special case of the flat response, where the detector responds to every photon mode with an identical response time, results of the conventional theories are reproduced qualitatively. However, drastic differences emerge in general cases where the detector responds only to limited photon modes. For example, against predictions of the conventional theories, the QZE or AZE may take place even for states that exactly follow the exponential decay law. We also discuss relation to the cavity quantum electrodynamics.
Polymer-anchored cobalt tetraarylporphyrin catalysts for the conversion of quadricyclane to norbornadiene (1979)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTPolymer-anchored cobalt tetraarylporphyrin catalysts for the conversion of quadricyclane to norbornadieneR. B. King and E. M. SweetCite this: J. Org. Chem. 1979, 44, 3, 385–391Publication Date (Print):February 1, 1979Publication History Published online1 May 2002Published inissue 1 February 1979https://pubs.acs.org/doi/10.1021/jo01317a016https://doi.org/10.1021/jo01317a016research-articleACS PublicationsRequest reuse permissionsArticle Views264Altmetric-Citations89LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Heterogeneous Expression and Coordinate Regulation of Endogenous Retroviral Sequences in Human Peripheral Blood Mononuclear Cells (1992)

This study examines the expression of human endogenous retroviral or retroviral-like (ERV) sequences in peripheral blood mononuclear cells (PBMC). Probes to 12 human ERV were used in Northern analyses of 38 patients with autoimmune muscle diseases and 31 blood donor controls. All patients and controls expressed multiple classes of ERV RNA. This expression was quite heterogenous: for each of the nine ERV classes for which expression was detected, some individuals showed high RNA levels whereas others showed low levels. ERV expression was independent of disease and autoantibody production. Statistical analysis of densitometric data indicated that expression of several classes of ERV was coordinately regulated. ERV expression in individual patients showed coordinate fluctuations with time. These studies demonstrate the heterogeneity and coordinate regulation of human ERV expression. To evaluate whether ERV expression might be affected by lymphocyte activation, PBMC were cultured with or without lymphocyte mitogens before RNA extraction. These studies demonstrated complex changes in ERV expression after lymphocyte activation. Murine ERV have several immunoregulatory activities. If human ERV have analogous effects, their heterogeneous expression and association with lymphocyte activation may have important biologic consequences.
Preference for Dried Bonito Broth in Olfactory-Blocked or Taste Nerve-Sectioned Mice in the Two-Bottle Choice Test (2008)

We investigated how gustatory and olfactory information contributes to the preference for dried bonito broth in mice. In the two-bottle preference test, intact mice consumed dried bonito broth in preference to water or an amino acid-nucleotide (AN) solution containing the same concentration of amino acids and nucleotides as that in dried bonito broth. It was observed that mice with transected bilateral chorda tympani (CT) nerves, those with transected bilateral glossopharyngeal (GL) nerves, and those that were intranasally administered with zinc sulfate preferred dried bonito broth to water. Zinc sulfate was used to produce a temporary loss of olfaction. In the two-bottle preference test with dried bonito broth and an AN solution, the preference for the former was reduced in mice with transected bilateral GL nerves and in those with an olfactory blockade, but not in mice with transected bilateral CT nerves. These results suggest that dried bonito broth was preferred over the AN solution, and that simultaneous inputs from olfaction and the GL nerve contributed to this preference.
Toward personalized synchrotron microbeam radiation therapy (2020)

Synchrotron facilities produce ultra-high dose rate X-rays that can be used for selective cancer treatment when combined with micron-sized beams. Synchrotron microbeam radiation therapy (MRT) has been shown to inhibit cancer growth in small animals, whilst preserving healthy tissue function. However, the underlying mechanisms that produce successful MRT outcomes are not well understood, either in vitro or in vivo. This study provides new insights into the relationships between dosimetry, radiation transport simulations, in vitro cell response, and pre-clinical brain cancer survival using intracerebral gliosarcoma (9LGS) bearing rats. As part of this ground-breaking research, a new image-guided MRT technique was implemented for accurate tumor targeting combined with a pioneering assessment of tumor dose-coverage; an essential parameter for clinical radiotherapy. Based on the results of our study, we can now (for the first time) present clear and reproducible relationships between the in vitro cell response, tumor dose-volume coverage and survival post MRT irradiation of an aggressive and radioresistant brain cancer in a rodent model. Our innovative and interdisciplinary approach is illustrated by the results of the first long-term MRT pre-clinical trial in Australia. Implementing personalized synchrotron MRT for brain cancer treatment will advance this international research effort towards clinical trials.
Inhibition of overactive TGF-β attenuates progression of heterotopic ossification in mice (2018)

Acquired heterotopic ossification (HO) is a painful and debilitating disease characterized by extraskeletal bone formation after injury. The exact pathogenesis of HO remains unknown. Here we show that TGF-β initiates and promotes HO in mice. We find that calcified cartilage and newly formed bone resorb osteoclasts after onset of HO, which leads to high levels of active TGF-β that recruit mesenchymal stromal/progenitor cells (MSPCs) in the HO microenvironment. Transgenic expression of active TGF-β in tendon induces spontaneous HO, whereas systemic injection of a TGF-β neutralizing antibody attenuates ectopic bone formation in traumatic and BMP-induced mouse HO models, and in a fibrodysplasia ossificans progressive mouse model. Moreover, inducible knockout of the TGF-β type II receptor in MSPCs inhibits HO progression in HO mouse models. Our study points toward elevated levels of active TGF-β as inducers and promoters of ectopic bone formation, and suggest that TGF-β might be a therapeutic target in HO.
Comparison of Topical Therapy for Striae Alba (20% Glycolic Acid/0.05% Tretinoin Versus 20% Glycolic Acid/ 10% L-Ascorbic Acid) (1998)

Analysis of these data reveals: 1) both regimens can improve the appearance of stretch marks; 2) these topical therapy regimens are safe and effective in study patients with minimal irritation; 3) elastin content within the reticular and papillary dermis can increase with topical 20% glycolic acid combined with 0.05% tretinoin emollient cream therapy; 4) both regimens increased epidermal thickness and decreased papillary dermal thickness in treated stretch marks when compared with untreated stretch marks; 5) combined epidermal and papillary dermal thickness in stretch marks treated with either topical regimen approaches that of normal skin; and 6) profilometry can objectively measure differences in skin texture associated with striae treatments when compared to controls, however, it is not sensitive enough to justify comparison or quantitative improvements between similarly effective treatments.
Foot Dimensions and Foot Shape: Differences Due to Growth,Generation and Ethnic Origin. (1998)

Foot dimensions, indices, and variables relating to shape characteristics of foot outlines taken for Japanese, Australian aborigines, Indonesians and French were analyzed and compared with existing data to identify the differences due to growth, generation and ethnic background. The following findings were obtained: 1) There has been rapid increases in foot length for Japanese born after ca. 1950. 2) Japanese born after ca. 1960 had a smaller foot girth and foot breadth for their foot length compared to Japanese born before ca. 1950. 3) Secular change rather than aging is responsible for the generation differences in foot size and proportion. 4) Elderly female Japanese born before 1930 had very wide feet and a weaker valgus tendency of the first toe. Special attention should be paid to the needs of older men, and especially older women in the production planning and designing of the toe shapes of shoe lasts. 5) Differences due to growth and secular change in foot outflare, which is represented by posterior flexion angle of the medial axis of foot outline, were not significant. Ethnic differences in foot outflare was not significant for females. This does not appear to be easily influenced by environmental factors, such as nutritional status and shoe-wearing habits. 6) Mongoloid populations including Japanese have a wider foot for foot length compared to Caucasoid and Australoid populations. 7) East Asian populations including Japanese have a smaller foot length for height compared to Southeast Asians and Africans. The causes may be both genetic and environmental.
Interleukin-13 responsiveness and interleukin-13 receptor expression in non-Hodgkin's lymphoma and reactive lymph node B cells. Modulation by CD40 activation. (1997)

Interleukin-13 (IL-13) responsiveness was examined in lymph node B cells from patients with non-Hodgkin's lymphoma (NHL) and patients with benign reactive immune disorders. Proliferation assays showed that NHL B cells from 8 of 21 patients responded to IL-13 in the absence of a co-activation signal. IL-13-unresponsive NHL B cells from 9 of the 13 remaining patients were induced to respond to IL-13 upon antibody-triggered CD40 activation, as did reactive B cells. Binding experiments with radiolabeled IL-13 revealed that the constitutive expression of IL-13 receptors (IL-13R) was associated with IL-13 responsiveness in the absence of CD40 activation. In IL-13-unresponsive cells, IL-13R expression was induced after CD40 activation. This effect was enhanced by IL-10, which was able to potentiate the IL-13 response of CD40-activated cells. Furthermore, IL-13 was found to increase the viability of cultured NHL cells, but not that of non-malignant cells. These results suggest that IL-13, which behaves as a potent co-factor for normal lymph node B cell activation, might provide growth and/or survival advantages to NHL B cells.
A Novel Nuclear Localization Signal in the Auxiliary Domain of Apobec-1 Complementation Factor Regulates Nucleocytoplasmic Import and Shuttling (2003)

C to U editing of the nuclear apolipoprotein B (apoB) transcript is mediated by a core enzyme containing a catalytic deaminase, apobec-1, and an RNA binding subunit, apobec-1 complementation factor (ACF). ACF expression is predominantly nuclear, including mutant proteins with deletions of a putative nuclear localization signal. We have now identified a novel 41-residue motif (ANS) in the auxiliary domain of ACF that functions as an authentic nuclear localization signal. ANS-green fluorescence protein and ANS-beta-galactosidase chimeras were both expressed exclusively in the nucleus, whereas wild-type chimeras or an ACF deletion mutant lacking the ANS were cytoplasmic. Nuclear accumulation of ACF is transcription-dependent, temperature-sensitive, and reversible, features reminiscent of a shuttling protein. ACF relocates to the cytoplasm after actinomycin D treatment, an effect blocked by the CRM1 inhibitor leptomycin B. Heterokaryon assays confirmed directly that ACF shuttles in vivo. ACF binds to the protein carrier, transportin 2 in vivo, and colocalizes to the nucleus as determined by confocal microscopy. Co-immunoprecipitation experiments revealed that transportin 2 binds directly to the ANS motif. These data suggest that directed nuclear localization and compartmentalization of the core complex of the apoB RNA editing enzyme is regulated through a dominant targeting sequence (ANS) contained within ACF.
Update on radiation for restenosis. (2002)

Coronary stenting is now used in most coronary interventions and reduces the restenosis rate to 20% or less. However, repeat in-stent restenosis occurs in 40%-60% of these patients. Radiation therapy, guided by intravascular ultrasound, can further reduce the incidence of repeat in-stent restenosis, and clinical trials have shown that all patient subgroups benefit from it. The mechanism appears to be reduction in neointimal hyperplasia. Studies are now evaluating use of medication with stents and radiotherapy, implantation of radiation-eluting stents, longer radiation sources to adequately cover lesions, and catheter balloons inflated with radioisotope solution. Intravascular radiation may soon be the standard of treatment for patients with in-stent restenosis and has the potential to reduce the recurrence rate to below 10%.
Virtual race as an examination test: models, solutions, experiences (2001)

In this paper, an idea is presented on how to motivate students to learn an exacting subject such as computer-aided control systems design (CACSD). The idea is that the exam is a virtual race or competition meaning that the students are graded according to the success achieved in the competition. The aim of the competition is set by the professor, and the students have to design a controller to achieve the best possible result they can. Four competition subjects, those used in the last four years of CACSD education at the Faculty of Electrical Engineering, University of Ljubljana, are reviewed with emphasis on the fourth one-the surf regatta. The mathematical model of the surf is then presented. In all four cases, the criterion for the competition was the shortest time. The paper concludes with the description of solutions applied by students and the faculty experiences with the course.
Functional Analysis of Cdc42 Residues Required for Guanine Nucleotide Exchange (2002)

Guanine nucleotide exchange factors (GEFs) directly engage small GTPases to facilitate the exchange of bound GDP for GTP, leading to GTPase activation. Several recent crystal structures of GEFs in complex with Rho family GTPases highlight the conserved interactions and conformational alterations necessary for catalyzing exchange. In the present study, functional roles were defined for specific residues within Cdc42 implicated by the crystal structures as important for physiological exchange of guanine nucleotides within Rho GTPases. In particular, this study highlights the paramount importance of the phosphate-binding loop and interactions with the magnesium co-factor as critical for proper regulation of RhoGEF-catalyzed exchange. Other conformational alterations of the GTPases affecting interactions with the sugar and base of guanine nucleotides are also important but are secondary. Of particular note, substitution of alanine for cysteine at position 18 of Cdc42 leads to a fast cycling phenotype for Cdc42 with heightened affinity for RhoGEFs and produces a dominant negative form of Cdc42 capable of inhibiting RhoGEFs both in vitro and in vivo.
Combating Milk Fever, (1974)

Abstract Parturient paresis is a metabolic disease which is associated with parturition and initiation of lactation. It is characterized by low total serum calcium and inorganic phosphorus. Failure of the calcium homeostatic mechanism at parturition is associated with: (1) advanced age of cattle—older cattle absorb less dietary calcium and may have less exchangeable bone calcium; (2) too great an intake of calcium, over 100 to 125 g/ day; (3) reduced intake at parturition, greater in older cattle; (4) overconditioned cows which appear to go off-feed easily; and (5) increased hormones, estrogen, and glucocorticoids at parturition which may reduce serum calcium. Attempts to prevent failure of this mechanism include: (1) feeding prepartal diets low in calcium; (2) adjustment of the dietary calcium-to-phosphorus ratio; (3) feeding acidic diets, mineral acids, or ammonium chloride prepartum; (4) short-term administration of 90 to 100g of calcium chloride daily; (5) feeding massive doses of vitamin D prepartum; (6) prepartum administration of 25-hydroxycholecaIciferol, a metabolite of vitamin D 3 . While much is known, the real cause of failure in the calcium homeostatic mechanism remains unanswered.
Simulations of pendant drop formation of a viscoelastic liquid (2006)

A modified Volume-of-Fluid (VOF) numerical method is used to predict the dynamics of a liquid drop of a low viscosity dilute polymer solution, forming in air from a circular nozzle. Viscoelastic effects are rep-resented using an Oldroyd-B model. Predicted drop shapes are compared with experimental observations. The main features, including the timing of the shape evolution and the “bead-on-a-string ” effect, are well reproduced by the simulations. The results confirm published conclusions of the third author, that the defor-mation is effectively Newtonian until near the time of Newtonian pinch-off and that the elastic stress becomes large in the pinch region due to the higher extensional flow there.