gebhart/patrepeval huggingface dataset:
NMR in Structural Biology (1995)

NMR and structural biology the avenue to three-dimensional protein structure determination in solution establishing credibility for NMR structures of proteins evolution of NMR structure determination with biological macromolecules 1985-94 selected NMR structure determination conformational equilibria and internal mobility in proteins and in solution hydration of proteins and nucleic acids in solution protein folding.
Activation energy and spectroscopy of the growth of germanium films by ultraviolet laser-assisted chemical vapor deposition (1985)

Emission and absorption spectroscopic studies of a reactor used to grow germanium thin films by photodissociating GeH4 at 248 nm with an excimer laser are described here. For every Ge or GeH (A→X) transition examined, the dependence of the emission line intensity on pump laser fluence was found to be quadratic, indicating that Ge and GeH have a common precursor which is itself produced by the simultaneous absorption of two 5-eV photons. This conclusion is supported by the known photochemistry of SiH4 and CH4 in the ultraviolet and the laser wavelength and intensity thresholds for the growth of Ge films. The short (∼2 μs) lifetime of GeH2 in the reactor suggests that the immediate precursor to Ge and GeH is the germyl radical, GeH3. The activation energy for Ge film growth in the temperature range 300≤T≤500 K has been measured to be 2.0±0.5 kcal/mole which suggests that the limiting mechanisms for the film growth rate are a gas-phase reaction and surface desorption of residual gases rather than surface diffusion. Radiation trapping on several Ge emission lines and absorption measurements at 422.6 nm indicate that the steady-state Ge number density in the reactor is ∼1012 cm−3 which is sufficient to account for the observed film growth rates. Spatial profiles of the atomic Ge and GeH emission from the reactor have been measured with a resolution of ∼100 μm.
Abstract 2936: Obesity and Mortality in Patients with Heart Failure and Preserved Systolic Function (2008)

Several large cohort studies document better survival in heart failure patients with decreased left ventricular ejection fraction (EF) and higher body mass index (BMI) compared to those with a lower BMI. It is unclear, though, if this “obesity paradox” applies to heart failure patients with preserved EF or if it extends to the very obese (BMI>35). We followed 1,235 consecutive patients with a prior diagnosis of heart failure and a preserved EF (≥50%) documented on echocardiography at one of three laboratories. We determined adjusted mortality and readmission rates at 1 year following the echocardiogram. Obesity (BMI>30) was noted in 542 patients (44%). The mean age of the cohort was 71 years, but this varied depending on BMI (73 years for BMI<25, 64 years for BMI> 35, p< 0.001). In a subset of patients with complete diastolic indices and LV mass measurements (n=405), 95% had objective evidence of diastolic dysfunction. Age-adjusted all-cause mortality (Figure ) at one year decreased with increasing BMI (31% if BMI < 25, 22% if BMI 25–29, 20% if BMI 30–35 and 19% if BMI>35, p=0.003). In a proportional hazards analysis that adjusted for patient history, demographics and laboratory values, the hazard ratios for total mortality (relative to a normal BMI) were 1.47 (95% CI, 1.06–2.05) for BMI<25, 0.95 (95% CI, 0.64 –1.42) for BMI 30 –35, and 0.83 (95% CI, 0.52–1.31), for BMI >35, p=0.046). Similar findings were noted for the composite endpoint of survival free from heart failure hospitalization. These data suggest that the obesity paradox applies to heart failure patients with preserved systolic function and extends to very obese patients (BMI>35).
MMP-2 release and activation in ovarian carcinoma: the role of fibroblasts (1999)

The matrix metalloproteinase MMP-2 is up-regulated in epithelial cancers and its mRNA localizes to stromal fibroblasts. In this paper we show that co-culture of ovarian carcinoma cells with fibroblasts resulted in an enhanced release of proMMP-2 and TIMP-2 into the culture medium. Cell–cell interaction was a major factor in this response and carcinoma cells stimulated proMMP-2 release from fibroblasts but not vice versa. Collagen I, in a dose-dependent fashion, induced activation of proMMP-2 by tumour-derived, but not normal, fibroblasts. Antibody to β1 integrin also induced proMMP-2 activation by tumour-derived fibroblasts. The activation involved the processing of proMMP-2 by a membrane-bound metalloproteinase. We propose that, in the ovarian tumour microenvironment, interaction between tumour cells and fibroblasts may enhance fibroblast production of the proMMP-2 and TIMP-2. Collagen I, also present in the ovarian tumours, then induces these fibroblasts to activate proMMP-2 even in the presence of TIMP-2. This active MMP-2 can associate with the cell surface of tumour cells and fibroblasts and is used in the processes of tissue remodelling and invasion.
Inhibitors of colon carcinogenesis (1977)

Disulfiram (tetraethylthiuram disulfide, Antabuse) and sodium diethyldithiocarbamate, when added to the diet, inhibit 1,2-dimethylhydrazine (DMH)-induced neoplasia of the large bowel in female CF1 mice. Ethylene bis(dithiocarbamato)manganese (Maneb) and bis(ethylxanthogen), two pesticides with structural similarities to disulfiram, produce comparable inhibition of DHM. In other work, disulfiram was found to inhibit the carcinogenic effect of azoxymethane (AOM) on the large bowel. Under comparable conditions the inhibition of AOM was considerably less than that obtained with DMH as the carcinogen. The data suggest that disulfiram inhibits DMH metabolism at more than one oxidative step.
Multivariable model for prediction of risk of significant complication during diagnostic cardiac catheterization (1993)

Although adequate data exist on the frequency of procedural-related complications during diagnostic cardiac catheterization, little information is available for the quantitative assessment of risk factors for significant complication. We analyzed 58,332 procedures in the 1990 SCA&I Registry Database in order to assess 1) the independent and cumulative significance of easily obtainable pre-procedural factors predictive of major complication and 2) the likelihood of a significant complication given the presence of these risk factors. A model was developed on a random sample of 38,888 patients and validated in the remaining 19,444 patients. Twelve variables were identified as having independent predictive behavior for significant complication with excellent agreement in the validation sample. The current model is an accurate and reliable instrument for stratifying risk of a significant complication during diagnostic catheterization.
Targeted inactivation of the X-linked adrenoleukodystrophy gene in mice (1997)

In its severe form, X-linked adrenoleukodystrophy (ALD) is a lethal neurologic disease of children, characterized by progressive cerebral demyelination and adrenal insufficiency. Associated with a biochemical defect of peroxisomal beta-oxidation, very long-chain fatty acids (VLCFA) build up in tissues that have a high turnover of lipids, such as central nervous system (CNS) white matter, adrenal cortex, and testis. Whether the abnormal accumulation of VLCFA is the underlying cause of demyelination or merely an associated biochemical marker is unknown. ALD is caused by mutations in the gene for a peroxisomal membrane protein (ALDP) that shares structural features with ATP-binding-cassette (ABC) transporters. To analyze the cellular function of ALDP and to obtain an animal model of this debilitating disease, we have generated transgenic mice with a targeted inactivation of the ald gene. Motor functions in ALDP-deficient mice developed at schedule, and unexpectedly, adult animals appeared unaffected by neurologic symptoms up to at least 6 months of age. Biochemical analyses demonstrated impaired beta-oxidation in mutant fibroblasts and abnormal accumulation of VLCFAs in the CNS and kidney. In 6-month-old mutants, adrenal cortex cells displayed a ballooned morphology and needle-like lipid inclusions, also found in testis and ovaries. However, lipid inclusions and demyelinating lesions in the CNS were not a feature. Thus, complete absence of ALDP expression results in a VLCFA storage disease but does not impair CNS function of young adult mice by pathologic and clinical criteria. This suggests that additional genetic or environmental conditions must be fulfilled to model the early-onset and lethality of cerebral ALD in transgenic mice.
Quality control material for plasma fibrinogen test produced from purified human fibrinogen (2003)

Plasma fibrinogen measurement is a routine laboratory procedure commonly performed on automated coagulation analysers. Its determination is quantitative, not quantitative. Yet, a lack of precision has been an issue for fibrinogen measurement. A control material derived from plasma comprises many proteins, inhibitors and fatty acids, any or all of which can interfere in the fibrinogen assay. This study has attempted to develop a quality control material using purified human fibrinogen and has compared measurement precision between both purified and plasma materials. Purified fibrinogen was prepared using Cohn fraction 1 and glycine precipitation. Purified fibrinogen clottability was greater than 95%, with no main plasma proteins, lipids or fibrinogen degradation products observed. Two purified control materials were lyophilized at normal (2.30 g l(-1)) and abnormal (1.20 g l(-1)) levels of fibrinogen concentration. Precision was evaluated using a liquid-type reagent, Thrombocheck Fib(L), on automated coagulation analysers. Coefficient of variation for within-run, intraday and between-day precision of the purified materials was 0.7-3.5%. In comparison, the coefficient of variation for plasma materials ranged from 1.2 to 5.3%. These results suggest that materials prepared from purified fibrinogen can be useful to laboratory quality control by improving overall precision of fibrinogen measurement and are applicable to automated coagulation analysers.
An interpretive/interactive subroutine system for raster graphics (1976)

A subroutine package has been developed for a disk based raster scan graphics system which builds the entire image in random access memory so that each pixel is randomly addressable, greatly simplifying the image construction routines. A pseudo-display file is used with a subpicture library for structuring images. Interaction with user programs is handled by a single subroutine in which a simple interpretive language, a point stack and the ability to dynamically assign meanings to function buttons creates a powerful environment.
A high-throughput scheduling algorithm for a buffered crossbar switch fabric (2002)

We examine high-throughput scheduling algorithms for buffered crossbar switch fabrics containing one buffer per crosspoint. We propose a scheduling system that uses longest queue first (LQF) scheduling for virtual output queues (VOQs) at the inputs and round-robin (RR) scheduling for the crosspoints. It is shown, through fluid model techniques, that this system achieves 100% throughput for input traffic that satisfies the strong law of large numbers and that produces a load /spl les/1/N for any input/output pair of an N/spl times/N switching fabric. Simulations indicate that 100% throughput may be attained for a much larger class of admissible loads.
AUTOMATIC CONTROL OF FABRY PEROT INTERFEROMETERS (1967)

No abstract available
Detection of a subgenomic mRNA for gene V, the putative reverse transcriptase gene of cauliflower mosaic virus (1985)

Polypeptides synthesized in vitro in rabbit reticulocyte lysates, directed by poly(A)+ RNA isolated from turnip leaves infected with cauliflower mosaic virus (CaMV), were analysed by polyacrylamide gel electrophoresis. Following translation of virus-specific RNA purified by hybrid-selection using CaMV DNA immobilized on DBM papers, the polypeptides observed included the viral gene VI inclusion body protein P62, and a larger product, P75, together with several smaller polypeptides. By translating RNA hybrid-selected with restriction fragments encompassing the CaMV genome, a mRNA for P75 has been mapped to gene V. These results, together with sucrose gradient ultracentrifugation studies, suggest that a CaMV gene V mRNA is a sub-genomic transcript of approximately 2.5Kb and 22S. The expression strategy of the CaMV genome is discussed in the light of our findings.
Human Liver Aldehyde Oxidase: Differential Inhibition of Oxidation of Charged and Uncharged Substrates* (1967)

HUMAN LIVER ALDEHYDE OXIDASE (ALDEHYDE: O(2) oxidoreductase, EC 1.2.3.1) has been purified 60-fold and some of its properties studied. Like aldehyde oxidase from other mammalian species, human liver aldehyde oxidase is an enzyme with dual substrate specificity, possessing the ability to catalyze not only the oxidation of aldehydes to the corresponding carboxylic acids, but also the hydroxylation of a number of nonaldehydic heterocyclic compounds; its relative activity towards the latter group of substrates is low, however, when compared with that of liver aldehyde oxidase from rabbit and guinea pig. When the aromatic aldehyde benzaldehyde is used as substrate, human liver aldehyde oxidase, like the rabbit enzyme, is strongly inhibited by menadione, estradiol-17beta, antimycin A, Triton X-100, and N-alkylphenothiazines; the human enzyme differs from the rabbit enzyme, however, in being relatively insensitive to oligomycin and Amytal. Like the rabbit enzyme, the human enzyme can catalyze the 3-hydroxylation of phenazine methosulfate (PMS) and the 6-hydroxylation of N-methylnicotinamide (NMN). With the rabbit enzyme, however, the aerobic hydroxylation of these substrates proceeds by a conventional mechanism, while with the human enzyme, the aerobic hydroxylation of PMS and NMN is anomalous in that the reaction is inhibited only by agents with affinity for the substrate-binding site, such as cyanide and N-alkylphenothiazines, and not by agents which inhibit the "internal electron transport chain" of the enzyme, such as menadione and diethylstilbestrol. This mode of oxidation appears to be unique to substrates with a positively charged quaternary nitrogen; the hydroxylation of other nonaldehydic heterocyclic substrates for the human enzyme is sensitive to conventional aldehyde oxidase inhibitors.
Use of a statistical model for lip synthesis (2002)

The goal of this work is to develop a statistical model of the lip movements for a specific speaker. The system is based on a Markov model trained on the visual part of the speech production. Such a model allows for an automatic generation of mouth shapes having fairly good natural looking dynamics. Applications might be both in image analysis and in image synthesis.
The Mode of Replication Is a Major Factor in Segregational Plasmid Instability in <i>Lactococcus lactis</i> (1993)

The effects of the rolling-circle and theta modes of replication on the maintenance of recombinant plasmids in Lactococcus lactis were studied. Heterologous Escherichia coli or bacteriophage lambda DNA fragments of various sizes were inserted into vectors based on either the rolling-circle-type plasmid pWV01 or the theta-type plasmid pAMbeta1. All pAMbeta1 derivatives were stably maintained. pWV01 derivatives, however, showed size-dependent segregational instability, in particular when large DNA fragments were inserted. All recombinant pWV01 derivatives generated high-molecular-weight plasmid multimers (HMW) in amounts that were positively correlated with plasmid size and inversely correlated with the copy numbers of the monomeric plasmid forms. Formation of HMW or reductions in copy numbers were not observed with pAMbeta1 derivatives. The results indicate that HMW formation and/or reduction in plasmid copy numbers is an important factor in the maintenance of pWV01 derivatives. It is concluded that theta-type plasmids are superior to rolling-circle-type plasmids for cloning in lactococci.
On the security of public key protocols (1983)

Recently the use of public key encryption to provide secure network communication has received considerable attention. Such public key systems are usually effective against passive eavesdroppers, who merely tap the lines and try to decipher the message. It has been pointed out, however, that an improperly designed protocol could be vulnerable to an active saboteur, one who may impersonate another user or alter the message being transmitted. Several models are formulated in which the security of protocols can be discussed precisely. Algorithms and characterizations that can be used to determine protocol security in these models are given.
Interferon alfa-2a and 13-cis-retinoic acid in renal cell carcinoma: antitumor activity in a phase II trial and interactions in vitro. (1995)

IFN and CRA showed antitumor activity in patients with advanced RCC, and the proportion and nature of response suggested CRA added therapeutic benefit to IFN. A phase III randomized trial of IFN plus CRA versus IFN alone and a phase II trial of single-agent CRA have been initiated.
Charge storage and retention in electret dielectric layers for energy harvesting applications (2014)

By providing a permanent electric polarization, electrets have a wide range of applications in different fields like sensors and actuators, energy harvesting or biomedicine. Stable electrets with silicon-based compatible technology are particularly pursued. In this work, different dielectric layer stacks, including SiO <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> , Si <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sub> N <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">4</sub> , AL <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> O <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sub> and AlN, are evaluated in terms of charge storage and retention. The corona charging characteristics are analyzed and local micro-breakdowns of the dielectric layers are observed for critical electric fields in the range of 6-7 MV/cm. A hexamethyldisilazane (HMDS) surface treatment is confirmed to provide an effective protection for electret charge retention. Unfortunately for potential applications involving liquids, the charge is found to vanish after electret surface soaking with either deionized water or ethanol. In principle, deeper charge storage in the electret dielectric layers could be achieved by using an alternative method based on charge injection by means of a direct contact. The results of first attempts with such alternative technique are also reported.
Comparison of the apoptosis-inducing capability of sulforaphane analogues in human colon cancer cells. (2010)

The anticancer activity of sulforaphane is known to be mediated at least partly by apoptosis induction and associated with the presence of the -N=C=S moiety. The present study explored how oxidation of sulphur in the side chain of sulforaphane affected apoptosis induction to provide the chemical basis of sulforaphane effects. Sulforaphane analogues containing oxidised sulphur (alyssin, sulforaphane, erysolin and alyssin sulfone) exerted a superior growth inhibitory effect compared with sulforaphane analogues with nonoxidised sulphur (erucin and berteroin) in human colon cancer cell lines. Furthermore, erysolin was a more potent inducer of reactive oxygen species (ROS) and apoptosis compared with erucin. Erysolin-induced ROS generation and subsequent apoptosis were inhibited by pretreatment with the antioxidant N-acetyl-cysteine. Erysolin induced caspase-8 activation, while blockade of caspsase 8 activation inhibited apoptosis induced by erysolin. Taken together, sulforaphane analogues with oxidised sulphur were the most efficient apoptosis inducers, likely due to high-level ROS induction.
Neurogenic orthostatic hypotension &ndash; management update and role of droxidopa (2015)

Orthostatic hypotension (OH) is defined as a significant decrease in blood pressure (BP) during the first 3 minutes of standing or a head up on a tilt table. Symptoms of OH are highly variable, ranging from mild light-headedness to recurrent syncope. OH occurs due to dysfunction of one or more components of various complex mechanisms that interplay closely to maintain BP in a normal range during various physiological and associated disease states. Various biochemical and electrophysiological studies are often undertaken to assess the severity and etiology of OH. In addition to the lifestyle modifications, various medications that stimulate the adrenergic receptors or increase central blood volume are used in patients with OH. Droxidopa is a newer agent that increases the levels of norepinephrine in postganglionic sympathetic neurons. Management strategies for OH are presented, including the mechanism of action of droxidopa and various studies performed to assess its efficacy.
Formation of 2-oxazolines by a cyclization involving the displacement of mercury (1976)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTFormation of 2-oxazolines by a cyclization involving the displacement of mercuryRichard A. Kretchmer and Patrick J. DalyCite this: J. Org. Chem. 1976, 41, 2, 192–195Publication Date (Print):January 1, 1976Publication History Published online1 May 2002Published inissue 1 January 1976https://pubs.acs.org/doi/10.1021/jo00864a003https://doi.org/10.1021/jo00864a003research-articleACS PublicationsRequest reuse permissionsArticle Views76Altmetric-Citations11LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts