gebhart/patrepeval huggingface dataset:
The Mechanism of Action of Lysobactin (2015)

Lysobactin, also known as katanosin B, is a potent antibiotic with in vivo efficacy against Staphylococcus aureus and Streptococcus pneumoniae. It was previously shown to inhibit peptidoglycan (PG) biosynthesis, but its molecular mechanism of action has not been established. Using enzyme inhibition assays, we show that lysobactin forms 1:1 complexes with Lipid I, Lipid II, and Lipid II(A)(WTA), substrates in the PG and wall teichoic acid (WTA) biosynthetic pathways. Therefore, lysobactin, like ramoplanin and teixobactin, recognizes the reducing end of lipid-linked cell wall precursors. We show that despite its ability to bind precursors from different pathways, lysobactin's cellular mechanism of killing is due exclusively to Lipid II binding, which causes septal defects and catastrophic cell envelope damage.
The Nee-kon Project: Designing and Implementing Prevention Strategies for Young Native American Children (1998)

SUMMARY Demonstration programs creatively and adaptively deal with environmental factors which place children at high risk for later development of substance abuse. This article focuses on an example of such a program, designed to build resiliency and protective factors within young at-risk Indian children in Oklahoma through helping them bond to supportive adults and to school. Preschool children enrolled at the Kickapoo Head Start Center were involved in school transition, school readiness, school attendance, and classroom-based prevention activities while attending the Head Start Center and after matriculation into local public schools. Additional early intervention was provided to children already experiencing school adjustment difficulties. Families and Head Start staff were involved in interventions designed to make home and school environments more supportive. The article identifies the problems constituting risk factors, details the culturally appropriate solutions generated and challenges met in the course of implementation.
Optical Wireless Communication Using Digital Pulse Interval Modulation (1998)

This paper presents a study of digital pulse interval modulation (DPIM) as a candidate modulation scheme for optical wireless communications. DPIM code characteristics are discussed and the theoretical error probability performance of DPIM is analyzed in terms of the packet error rate. Performance comparisons are made with the more established techniques of on-off keying and pulse position modulation (PPM). We show that, for a simple threshold detector based receiver, DPIM can out perform PPM in terms of bandwidth efficiency and power efficiency, by taking advantage of its inherent variable symbol duration. Practical results are given for an experimental system in the form of eye diagrams. The use of a coding scheme with a non-uniform symbol duration does have implications for system design, which are discussed in the paper.
The chloride current induced by expression of the protein pICln in Xenopus oocytes differs from the endogenous volume‐sensitive chloride current. (1996)

1. Phenotypical similarities between ICl,swell, the cell-swelling-induced chloride current and ICln, the nucleotide-sensitive chloride current induced by expression of mammalian pICln in Xenopus oocytes, have led to models which identify pICln either as the volume-sensitive chloride channel or as a cytosolic regulator thereof. 2. To investigate critically the relationship between ICl,swell and pICln two-microelectrode voltage clamp experiments were performed on Xenopus oocytes in which either human pICln was expressed or endogenous ICl,swell was activated. 3. Several criteria that clearly differentiated ICln from ICl,swell were detected. Outward rectification and the discrimination between NO3- and Cl- were more pronounced for ICln. Cyclamate blocked ICln but not ICl,swell. In contrast to ICl,swell, inactivation kinetics of ICln were pH independent and extracellular cAMP blocked only the outward ICln component. Finally, ICln was readily expressed in collagenase-defolliculated oocytes and was not modulated by extracellular hypotonicity, whereas ICl,swell could only be triggered in follicle-enclosed or manually defolliculated oocytes. 4. We therefore conclude that ICln and ICl,swell are two different chloride currents. Consequently, any model which invokes a crucial role for pICln in ICl,swell should be critically reviewed.
Reduction of Carcass Fat in Swine with Dietary Addition of Dihydroxyacetone and Pyruvate (1989)

Swine weighing 80 to 85 kg were fed a basal corn-soybean meal diet plus a mixture of dihydroxyacetone and pyruvate (3:1) (triose) or Polycose (control), a glucose polymer, as 3.85% of calories (4% of the diet). Twenty-four pigs were pair-fed the triose mixture or control diet for 28 d in litter-mate pairs of the same sex. Weight gain and feed consumption were recorded and carcasses were evaluated for fat and muscle accretion. The right rear leg and rear one-third of the right loin were skinned, deboned, ground and analyzed for protein, fat, moisture and ash content. Average backfat depth and backfat depth at the first, last and 10th rib were reduced by 12, 15, 14 and 12% (P less than .01), respectively, in triose-fed pigs. Loin eye area and untrimmed lean cuts were not altered by diet, but percentage trimmed lean cuts was higher (P less than .02) in triose-fed pigs (57.6 vs 55.3%). Leg and loin tissue samples from pigs fed the triose mixture had a lower (P less than .01) percentage of fat and a corresponding increased (P less than .01) percentage of protein. Organ weights and the blood biochemical profile were not altered by triose feeding. Liver function tests were not altered in animals consuming the trioses, except for an 18% decrease (P less than .05) in serum glutamic pyruvic transaminase. Ingestion of dihydroxyacetone and pyruvate will reduce body fat in limit-fed swine without reducing muscle protein deposition.
Heterofertilization exhibited by trifluralin-induced bicellular pollen on diploid and tetraploid maize crosses (2001)

The heterofertilization rates and fertility of trifluralin-induced bicellular pollen were investigated in maize (Zea mays L.). A diploid inbred line, Oh43 (r1/r1), and a tetraploid line, Q28-1 (r1/r1/r1/r1), were pollinated with a trifluralin treated diploid stock heterozygous for R1-scm2. The gene R1-scm2 conditions purple pigmentation in both the embryo and the aleurone layer. Heterofertilized kernels were detected as discordant kernels, i.e., yellow kernel with purple embryo or purple kernel with white embryo. The diploiddiploid crosses treated with 0.20.3% Trefanocide solution (0.090.13% trifluralin) resulted in incidences of discordant kernels (3.74.8%) that were significantly higher than the control (2.3%). Most of the seedlings (86%) of the discordant kernels in the 0.3% treatment were triploids or triploid-class aneuploids. In tetraploiddiploid crosses, trifluralin treatments increased the number of plump kernels on the tetraploid ears. In the 0.3% treatment, 5.2% of ovaries produced plump kernels on the ears and most of the seedlings (92%) were tetraploids or tetraploid-class aneuploids, whereas in the control, only 1.5% ovaries produced plump kernels and most of the seedlings (98%) were triploids or triploid-class aneuploids. A high rate of discordance was observed among the plump kernels both in the treated plots (36.148.0%) and in the control (33.3%). Consequently, almost all of the plump kernels from the tetraploiddiploid crosses were considered to be the results of heterofertilization.Key words: trifluralin-induced bicellular pollen, chromosome doubling, heterofertilization, tetraploiddiploid cross, Zea mays L.
Red Ginseng Extract Promotes the Hair Growth in Cultured Human Hair Follicles (2014)

Ginseng has been shown to promote hair growth in several recent studies. However, its effects on human hair follicles and its mechanisms of action have not been sufficiently elucidated. This study aimed to investigate the hair growth-promoting effects of red ginseng extract (RGE) and its ginsenosides. The proliferative activities of cultured human hair follicles treated with RGE and ginsenoside-Rb1 were assessed using Ki-67 immunostaining. Their effects on isolated human dermal papilla cells (hDPCs) were evaluated using cytotoxicity assays, immunoblot analysis of signaling proteins, and the determination of associated growth factors. We examined the ability of RGE and ginsenosides to protect hair matrix keratinocyte proliferation against dihydrotestosterone (DHT)-induced suppression and their effects on the expression of androgen receptor. The in vivo hair growth-promoting effect of RGE was also investigated in C57BL/6 mice. Both RGE and ginsenoside-Rb1 enhanced the proliferation of hair matrix keratinocytes. hDPCs treated with RGE or ginsenoside-Rb1 exhibited substantial cell proliferation and the associated phosphorylation of ERK and AKT. Moreover, RGE, ginsenoside-Rb1, and ginsenoside-Rg3 abrogated the DHT-induced suppression of hair matrix keratinocyte proliferation and the DHT-induced upregulation of the mRNA expression of androgen receptor in hDPCs. Murine experiments revealed that the subcutaneous injection of 3% RGE resulted in more rapid hair growth than the negative control. In conclusion, RGE and its ginsenosides may enhance hDPC proliferation, activate ERK and AKT signaling pathways in hDPCs, upregulate hair matrix keratinocyte proliferation, and inhibit the DHT-induced androgen receptor transcription. These results suggest that red ginseng may promote hair growth in humans.
Use of betapropiolactone to disinfect fresh tissue without impairing antigenicity: method applicable to human immunodeficiency virus (HIV) positive tissue. (1989)

A method for inactivating viruses in tissues is reported that does not impair the antigenicity of the Coxsackie virus or of some common tissue antigens, a common problem with standard tissue fixation methods. Tissues can be placed briefly in Betapropiolactone before cryostat sectioning without any adverse effect on preservation or antigen expression. It is suggested that use of Betapropiolactone is applicable to tissues harbouring or exposed to the human immunodeficiency virus (HIV). As betapropiolactone has been reported to be carcinogenic in rodents any potential danger can be avoided by basic simple precautions.
Leveraging Filter Correlations for Deep Model Compression (2020)

We present a filter correlation based model compression approach for deep convolutional neural networks. Our approach iteratively identifies pairs of filters with the largest pairwise correlations and drops one of the filters from each such pair. However, instead of discarding one of the filters from each such pair naïvely, the model is re-optimized to make the filters in these pairs maximally correlated, so that discarding one of the filters from the pair results in minimal information loss. Moreover, after discarding the filters in each round, we further finetune the model to recover from the potential small loss incurred by the compression. We evaluate our proposed approach using a comprehensive set of experiments and ablation studies. Our compression method yields state-of-the-art FLOPs compression rates on various benchmarks, such as LeNet-5, VGG-16, and ResNet-50,56, while still achieving excellent predictive performance for tasks such as object detection on benchmark datasets.
Atherothrombotic risk factors & premature coronary heart disease in India: a case-control study. (2011)

Our results showed that thrombotic (smoking, low fruit/vegetables intake, fibrinogen, homocysteine) as well as atherosclerotic (hypertension, high fat diet, dyslipidaemia) risk factors were important in premature CHD. Multipronged prevention strategies are needed in young Indian subjects.
Proteomic Analysis Reveals a Synergistic Mechanism of Fluconazole and Berberine against Fluconazole-Resistant <i>Candida albicans</i>: Endogenous ROS Augmentation (2009)

Our previous study showed that concomitant use of berberine (BBR) and fluconazole (FLC) provided a synergistic action against FLC-resistant Candida albicans (C. albicans) clinical strains in vitro. To clarify the mechanism underlying this action, we performed a comparative proteomic study in untreated control cells and cells treated with FLC and/or BBR in 2 clinical strains of C. albicans resistant to FLC. Our analyses identified 16 differentially expressed proteins, most of which were related to energy metabolisms (e.g., Gap1, Adh1, and Aco1). Functional analyses revealed that FLC + BBR treatment increased mitochondrial membrane potential, decreased intracellular ATP level, inhibited ATP-synthase activity, and increased generation of endogenous reactive oxygen species (ROS) in FLC-resistant strains. In addition, checkerboard microdilution assay showed that addition of antioxidant ascorbic acid or reduced glutathione reduced the synergistic antifungal activity of FLC + BBR significantly. These results suggest that mitochondrial aerobic respiration shift and endogenous ROS augmentation contribute to the synergistic action of FLC + BBR against FLC-resistant C. albicans.
The Architecture of Thomaston, Maine (1951)

Research Article| December 01 1951 The Architecture of Thomaston, Maine Samuel M. Green Samuel M. Green Search for other works by this author on: This Site PubMed Google Scholar Journal of the Society of Architectural Historians (1951) 10 (4): 24–32. https://doi.org/10.2307/987571 Views Icon Views Article contents Figures & tables Video Audio Supplementary Data Peer Review Share Icon Share Twitter LinkedIn Tools Icon Tools Get Permissions Cite Icon Cite Search Site Citation Samuel M. Green; The Architecture of Thomaston, Maine. Journal of the Society of Architectural Historians 1 December 1951; 10 (4): 24–32. doi: https://doi.org/10.2307/987571 Download citation file: Ris (Zotero) Reference Manager EasyBib Bookends Mendeley Papers EndNote RefWorks BibTex toolbar search Search Dropdown Menu toolbar search search input Search input auto suggest filter your search All ContentJournal of the Society of Architectural Historians Search This content is only available via PDF. Article PDF first page preview Close Modal You do not currently have access to this content.
A Higher-Order Generalized Singular Value Decomposition for Comparison of Global mRNA Expression from Multiple Organisms (2011)

The number of high-dimensional datasets recording multiple aspects of a single phenomenon is increasing in many areas of science, accompanied by a need for mathematical frameworks that can compare multiple large-scale matrices with different row dimensions. The only such framework to date, the generalized singular value decomposition (GSVD), is limited to two matrices. We mathematically define a higher-order GSVD (HO GSVD) for N≥2 matrices D(i)∈R(m(i) × n), each with full column rank. Each matrix is exactly factored as D(i)=U(i)Σ(i)V(T), where V, identical in all factorizations, is obtained from the eigensystem SV=VΛ of the arithmetic mean S of all pairwise quotients A(i)A(j)(-1) of the matrices A(i)=D(i)(T)D(i), i≠j. We prove that this decomposition extends to higher orders almost all of the mathematical properties of the GSVD. The matrix S is nondefective with V and Λ real. Its eigenvalues satisfy λ(k)≥1. Equality holds if and only if the corresponding eigenvector v(k) is a right basis vector of equal significance in all matrices D(i) and D(j), that is σ(i,k)/σ(j,k)=1 for all i and j, and the corresponding left basis vector u(i,k) is orthogonal to all other vectors in U(i) for all i. The eigenvalues λ(k)=1, therefore, define the "common HO GSVD subspace." We illustrate the HO GSVD with a comparison of genome-scale cell-cycle mRNA expression from S. pombe, S. cerevisiae and human. Unlike existing algorithms, a mapping among the genes of these disparate organisms is not required. We find that the approximately common HO GSVD subspace represents the cell-cycle mRNA expression oscillations, which are similar among the datasets. Simultaneous reconstruction in the common subspace, therefore, removes the experimental artifacts, which are dissimilar, from the datasets. In the simultaneous sequence-independent classification of the genes of the three organisms in this common subspace, genes of highly conserved sequences but significantly different cell-cycle peak times are correctly classified.
Alkylation of phthalimidines. (1975)

The present paper provides a new useful means of synthesis of 2, 3, 3-trisubstituted phthalimidines. Alkylation of phthalimidines at 3-position has been found to proceed with alkyl halide in liquid ammonia in the presence of potassium amide.
Design and analysis of replicated servers to support IP-host mobility in enterprise networks (2002)

Mobility support in IP networks requires the use of servers to forward packets to mobile hosts and to maintain information pertaining to a mobile host's location in the network. In one proposed protocol, the mobile IP protocol, location and packet forwarding functions are provided by servers referred to as home agents. These home agents may become the bottleneck when there are a large number of mobile hosts in the network. In this paper, we consider the design and analysis of load balancing mechanisms for multiple home agents in the mobile IP protocol. We propose a load balancing scheme in which a home agent may periodically transfer the control of a mobile host to another home agent in the same network through the use of functions supported in mobile IP. The periodicity with which this transfer is performed affects the load balancing gain as well as the associated overhead. We analyze our load balancing mechanism under bursty traffic arrival conditions using a Markov modulated Poisson process. The results show that the proposed load balancing scheme can yield modest gains over alternative load balancing strategies.
Segregation-induced ordered superstructures at general grain boundaries in a nickel-bismuth alloy (2017)

The properties of materials change, sometimes catastrophically, as alloying elements and impurities accumulate preferentially at grain boundaries. Studies of bicrystals show that regular atomic patterns often arise as a result of this solute segregation at high-symmetry boundaries, but it is not known whether superstructures exist at general grain boundaries in polycrystals. In bismuth-doped polycrystalline nickel, we found that ordered, segregation-induced grain boundary superstructures occur at randomly selected general grain boundaries, and that these reconstructions are driven by the orientation of the terminating grain surfaces rather than by lattice matching between grains. This discovery shows that adsorbate-induced superstructures are not limited to special grain boundaries but may exist at a variety of general grain boundaries, and hence they can affect the performance of polycrystalline engineering alloys.
Beyond growth rate 0.6: What drives <i>Corynebacterium glutamicum</i> to higher growth rates in defined medium (2013)

In a former study we showed that Corynebacterium glutamicum grows much faster in defined CGXII glucose medium when growth was initiated in highly diluted environments [Grünberger et al. (2013b) Biotechnol Bioeng]. Here we studied the batch growth of C. glutamicum in CGXII at a comparable low starting biomass concentration of OD ≈ 0.005 in more detail. During bioreactor cultivations a bi-phasic growth behavior with changing growth rates was observed. Initially the culture grew with μˆ=0.61±0.02 h-1 before the growth rate dropped to μˆ=0.46±0.02 h-1. We were able to confirm the elevated growth rate for C. glutamicum in CGXII and showed for the first time a growth rate beyond 0.6 in lab-scale bioreactor cultivations on defined medium. Advanced growth studies combining well-designed bioreactor and microfluidic single-cell cultivations (MSCC) with quantitative transcriptomics, metabolomics and integrative in silico analysis revealed protocatechuic acid as a hidden co-substrate for accelerated growth within CGXII. The presented approach proves the general applicability of MSCC to investigate and validate the effect of single medium components on microorganism growth during cultivation in liquid media, and therefore might be of interest for any kind of basic growth study.
Characterization of high affinity binding sites for charybdotoxin in synaptic plasma membranes from rat brain. Evidence for a direct association with an inactivating, voltage-dependent, potassium channel. (1990)

Charybdotoxin (ChTX), a potent peptidyl inhibitor of several types of K+ channels, binds to sites in vascular smooth muscle sarcolemma (Vázquez, J., Feigenbaum, P., Katz, G. M., King, V. F., Reuben, J. P., Roy-Contancin, L., Slaughter, R. S., Kaczorowski, G. J., and Garcia, M. L. (1989) J. Biol. Chem. 265, 20902-20909) which are functionally associated with a high conductance Ca2(+)-activated K+ channel (PK,Ca). 125I-ChTX also binds specifically and reversibly to a single class of sites in plasma membranes prepared from rat brain synaptosomes. These sites exhibit a Kd of 25-30 pM, as measured by either equilibrium or kinetic binding protocols and display a maximum density of about 0.3-0.5 pmol/mg of protein. Competition studies with native ChTX yield a Ki of 8 pM for the noniodinated toxin. The highest density of ChTX sites exists in vesicle fractions of plasma membrane origin. Binding of 125I-ChTX is modulated by metal ions that interact with K+ channels: Ba2+, Ca2+, and Cs+ cause inhibition of ChTX binding; Na+ and K+ stimulate binding at low concentration before producing complete inhibition as their concentration is increased. Stimulation of binding is due to an allosteric interaction that decreases Kd whereas inhibition results from an ionic strength effect. Tetraethylammonium ion has no effect on binding, but tetrabutylammonium ion blocks binding with a Ki of 2.5 mM. Different toxins (i.e. alpha-dendrotoxin, noxiustoxin) that inhibit an inactivating, voltage-dependent K+ channel (PK,V) block 125I-ChTX binding in brain. In marked contrast, iberiotoxin, a selective inhibitor of PK,Ca, has no effect on ChTX binding in this preparation. Inhibition of ChTX binding by alpha-dendrotoxin and noxiustoxin results from an allosteric interaction between separate binding sites for these agents and the ChTX receptor. Taken together, these results suggest that the ChTX sites present in brain are associated with PK,V rather than with PK,Ca. Therefore, 125I-ChTX is a useful probe for elucidating the biochemical properties of a number of different types of K+ channels.
Three-dimensional brain-on-chip model using human iPSC-derived GABAergic neurons and astrocytes: Butyrylcholinesterase post-treatment for acute malathion exposure (2020)

Organophosphates (OPs) induce acute and chronic neurotoxicity, primarily by inhibiting acetylcholinesterase (AChE) activity as well as by necrosis, and apoptosis. Butyrylcholinesterase (BuChE), an exogenous bioscavenger of OPs, can be used as a treatment for OP exposure. It is prerequisite to develop in vitro brain models that can study BuChE post-treatment for acute OP exposure. In this study, we developed a three-dimensional (3D) brain-on-chip platform with human induced pluripotent stem cell (iPSC)-derived neurons and astrocytes to simulate human brain behavior. The platform consists of two compartments: 1) a hydrogel embedded with human iPSC-derived GABAergic neurons and astrocytes and 2) a perfusion channel with dynamic medium flow. The brain tissue constructs were exposed to Malathion (MT) at various concentrations and then treated with BuChE after 20 minutes of MT exposure. Results show that the iPSC-derived neurons and astrocytes directly interacted and formed synapses in the 3D matrix, and that treatment with BuChE improved viability after MT exposure up to a concentration of 10-3 M. We conclude that the 3D brain-on-chip platform with human iPSC-derived brain cells is a suitable model to study the neurotoxicity of OP exposure and evaluate therapeutic compounds for treatment.