gebhart/patrepeval huggingface dataset:
Spectral analysis of nonlinear flows (2009)

We present a technique for describing the global behaviour of complex nonlinear flows by decomposing the flow into modes determined from spectral analysis of the Koopman operator, an infinite-dimensional linear operator associated with the full nonlinear system. These modes, referred to as Koopman modes, are associated with a particular observable, and may be determined directly from data (either numerical or experimental) using a variant of a standard Arnoldi method. They have an associated temporal frequency and growth rate and may be viewed as a nonlinear generalization of global eigenmodes of a linearized system. They provide an alternative to proper orthogonal decomposition, and in the case of periodic data the Koopman modes reduce to a discrete temporal Fourier transform. The Arnoldi method used for computations is identical to the dynamic mode decomposition recently proposed by Schmid & Sesterhenn ( Sixty-First Annual Meeting of the APS Division of Fluid Dynamics , 2008), so dynamic mode decomposition can be thought of as an algorithm for finding Koopman modes. We illustrate the method on an example of a jet in crossflow, and show that the method captures the dominant frequencies and elucidates the associated spatial structures.
Fractal Analysis of Self-Sharpening Phenomenon in cBN Grinding (2008)

This paper presents a fractal analysis of the self-sharpening phenomenon of the grain cutting edges in cBN grinding. To clarify the self-sharpening mechanism due to the micro fracture of the cutting edges, the changes in three-dimensional profile of the cutting edges in the grinding process have been measured using a scanning electron microscope with four electron probes and evaluated on the basis of the fractal analysis. The fractal dimension for surface profile of the cutting edge formed by the micro fracture is higher than that of the cutting edge formed by the ductile attritious wear. Therefore, the complicated changes in shape of the cutting edge due to the self-sharpening can be evaluated quantitatively using the fractal dimension.
P‐glycoprotein is localized in caveolae in resistant cells and in brain capillaries (2000)

A significant proportion of P-glycoprotein (P-gp) and caveolin was co-localized in caveolae isolated from resistant (CH(R)C5) cells overexpressing P-gp and from drug-sensitive Chinese hamster ovary cells (AuxB1). The proportion of P-gp and caveolin associated with caveolar microdomains was higher in CH(R)C5 cells grown in the presence of P-gp substrates (cyclosporin A or colchicine) than in untreated CH(R)C5 cells. Coimmunoprecipitation of P-gp and caveolin from CH(R)C5 lysates suggests that there is a physical interaction between them. Furthermore, co-localization of P-gp and caveolin was found in caveolae from brain capillaries, indicating that this association also takes place in vivo.
Skin preparation for the prevention of surgical site infection: which agent is best? (2009)

Procedural and surgical site infections create difficult and complex clinical scenarios. A source for pathogens is often thought to be the skin surface, making skin preparation at the time of the procedure critical. The most common skin preparation agents used today include products containing iodophors or chlorhexidine gluconate. Agents are further classified by whether they are aqueous-based or alcohol-based solutions. Traditional aqueous-based iodophors, such as povidone-iodine, are one of the few products that can be safely used on mucous membrane surfaces. Alcohol-based solutions are quick, sustained, and durable, with broader spectrum antimicrobial activity. These agents seem ideal for longer open surgeries with the potential for irrigation or surgical spillage, such as cystoprostatectomy, radical prostatectomy, and retroperitoneal lymph node dissection.
[Application and evaluation of the VICON system in gait analysis]. (1990)

By employing the VICON system, segment angular displacement, velocity and acceleration of the lower limbs were achieved from an Above-Knee (A/K) Amputee using a constant friction prosthesis during the swing phase of the gait cycle. By applying computer for data analysis and inputing anthropometric data of the (A/K) Amputee, kinematic trajectory and a stick diagram of lower limbs were obtained. The data were then compared with those obtained from normal subjects. The results showed that the VICON system can provide quantitative analysis of several important parameters in the gait cycle and that it is very helpful in the evaluation and rehabilitation training of abnormal gait.
Reverse Nanoimprint Lithography for Fabrication of Nanostructures (2012)

10.1166/nnl.2012.1424
Regulation of mRNA export in response to stress in Saccharomyces cerevisiae. (1996)

The response of eukaryotic cells to heat shock and other forms of stress occurs at both transcriptional and post-transcriptional levels. We used in situ hybridization to determine whether stress affected the subcellular distribution of poly(A)+ RNA in Saccharomyces cerevisiae. Following induction of stress by either heat shock (42 degrees C) or addition of a high concentration of ethanol (10%), the nucleocytoplasmic export of most poly(A)+ RNA was blocked. In situ hybridization indicated that heat-inducible SSA4 and SSA1 mRNAs were exported from nuclei under these same conditions. On the other hand, both GAL1 and URA3 transcripts expressed from the SSA4 promoter accumulated in nuclei following heat shock. Sequences within either the 5' 1600 or the 3' 500 nucleotides of SSA4 mRNA were sufficient to direct GAL1 mRNA to the cytoplasm during stress. The export of SSA4 mRNA following stress required functional nuclear pore complexes, as SSA4 mRNA accumulated in nuclei following heat shock of cells containing temperature-sensitive nucleoporins. However, the selective export of SSA4 mRNA was maintained in heat-shocked cells carrying temperature-sensitive alleles of RNA1, PRP20, or an inducible dominant-negative allele of GSP1, the S. cerevisiae homolog of RAN/TC4. The results reported here suggest that there is selective export of mRNA in yeast.
Use of Aminosilane Coupling Agents in Cementitious Materials (2005)

Abstract The work presented in this paper has been focused on the evaluation of the influence of the addition of aminosilanes like γ‐aminopropyl‐triethoxysilane (3‐AMPS) on physical and mechanical properties of fresh and hardened polymer modified cement mortars (PMCMs), which contained also mineral fillers like fumed silica and blast furnace slag. The role of the aminosilane in cementitious system was to produce surface modification and covalent bonding among different inorganic phases of inorganic matrix (cement, aggregate, fumed silica) and strong chemical interaction between inorganic matrix and organic (polymer) phase of the mortar. The strong chemical bonding of inorganic matrix and polymer phase transformed composite mortar into cementitious material with more like monolithic structure. Mortars with the addition of aminosilanes showed improved physical‐mechanical properties like bending strength, adhesion to concrete, and lower dry‐shrinkage.
A Dynamic Network Model of mTOR Signaling Reveals TSC-Independent mTORC2 Regulation (2012)

The kinase mammalian target of rapamycin (mTOR) exists in two multiprotein complexes (mTORC1 and mTORC2) and is a central regulator of growth and metabolism. Insulin activation of mTORC1, mediated by phosphoinositide 3-kinase (PI3K), Akt, and the inhibitory tuberous sclerosis complex 1/2 (TSC1-TSC2), initiates a negative feedback loop that ultimately inhibits PI3K. We present a data-driven dynamic insulin-mTOR network model that integrates the entire core network and used this model to investigate the less well understood mechanisms by which insulin regulates mTORC2. By analyzing the effects of perturbations targeting several levels within the network in silico and experimentally, we found that, in contrast to current hypotheses, the TSC1-TSC2 complex was not a direct or indirect (acting through the negative feedback loop) regulator of mTORC2. Although mTORC2 activation required active PI3K, this was not affected by the negative feedback loop. Therefore, we propose an mTORC2 activation pathway through a PI3K variant that is insensitive to the negative feedback loop that regulates mTORC1. This putative pathway predicts that mTORC2 would be refractory to Akt, which inhibits TSC1-TSC2, and, indeed, we found that mTORC2 was insensitive to constitutive Akt activation in several cell types. Our results suggest that a previously unknown network structure connects mTORC2 to its upstream cues and clarifies which molecular connectors contribute to mTORC2 activation.
The echo of Nuremberg: Nazi data and ethics. (1991)

Over the past two years, debate about the use of data taken from Nazi concentration camp experiments has intensified. Many survivors of the Holocaust have been particularly offended at the publication of hypothermia or other data. This article argues against the use of unethically obtained data, and considers the debate from the perspective of the rights of Holocaust victims.
First approach on rice bran oil extraction using limonene (2004)

Abstract Edible oil extraction with petroleum derivatives as solvents has caused safety, health, and environmental concerns everywhere. Thus, finding a safe alternative solvent will have a strong and positive impact on environments and general health of the world population, considering the scale of oil extraction operations worldwide. The extraction of oil from rice bran by d‐limonene and hexane (for comparison) has been carried out at their respective boiling points at various solvent‐to‐meal ratios and for various extraction times. The preliminary data suggested that the optimum solvent‐to‐meal ratio and extraction time required for d‐limonene extraction of rice bran oil to be 5:1 and 1 h respectively. The initial quality characteristics (free fatty acid content, oil color, phospholipid content) of crude oil extracted under these optimum conditions were analyzed using various analytical methods based on the standard methods of AOCS and were found to be comparable to the oil extracted with hexane. The initial positive result has paved the way for further studies on issues related to meal qualities as well as to a scale‐up of the method in the near future.
Recombinant creatine kinase proteins and proposed standards for creatine kinase isoenzyme and subform assays (1993)

We developed standards for creatine kinase (CK; EC 2.7.3.2) assays by expressing human CK cDNAs in COS cells. Cells were transiently transfected with full-length cDNAs for CK subunits M and B, individually and in combination; and subsequently, high concentrations of CK activity were present in the cell lysate (1.2 U/mg protein). These proteins exhibited the characteristic isoenzyme-specific electrophoretic mobilities for CK MM and BB isoenzymes. We also produced subforms of CK MM and MB, identical to the modified CK variants produced in plasma after muscle or myocardial injury, by mutating the cDNA for the CK M subunit to delete the carboxy-terminal lysine residue. When this construct was cotransfected with the normal cDNAs for CK M and B, five electrophoretically distinct CK isoenzymes were detected by nondenaturing electrophoresis: MM3, MM2, MM1, MB2, and MB1. These proteins retained 100% of their activity after storage of the cell lysates -20 or 4 degrees C for 3 months.
CpG motif in synthetic ODN primes respiratory burst of olive flounder Paralichthys olivaceus phagocytes and enhances protection against Edwardsiella tarda (2003)

Effects of synthetic cytidine-phosphate-guanosine (CpG) oligodeoxynucleotide (ODN) on respiratory burst activity of olive flounder (Paralichthys olivaceus) head-kidney phagocytes and on protection against lethal infection with Edwardsiella tarda were investigated. Phagocytes precultured with a CpG ODN showed significantly higher chemiluminescence (CL) responses than phagocytes precultured with guanosine-phosphate-cytidine (GpC) ODN or culture medium alone (control) at all concentrations. Supernatants produced from leucocytes, which were pulsed with CpG ODN, induced significantly higher respiratory burst activity than supernatants produced by GpC ODN or culture medium alone. In an in vivo experiment, respiratory burst activities of the head kidney phagocytes in the groups injected either 0.25 or 0.5 microg fish(-1) of CpG ODN were significantly higher than those in the groups injected with GpC ODN or HBSS (control) at 3, 5 and 7 d after injection. The groups of fish injected with 0.25 or 0.5 microg of CpG ODN showed higher survival rates (83.3%) than groups treated with GpC ODN (33.3%) and a control group (8.3%) after challenge with E. tarda. The present in vitro and in vivo experiments have demonstrated the ability of synthetic CpG ODN to increase phagocyte respiratory burst activity and disease resistance in olive flounder.
CROISSANCE DES TISSUS DU RAT ET QUALITÉ DES PROTÉINES ALIMENTAIRES; INFLUENCE SUR LE NOMBRE ET LA TAILLE DES CELLULES (1966)

La croissance de la carcasse, de l'intestin grle et du foie de rats nourris, les uns avec des pro- tines de mauvaise qualit (gluten de bl), les autres avec des protines de bonne qualit (farine de hareng), a t tudie en utilisant les tests suivants :
Fabrication and Luminescence of Designer Surface Patterns with β-Cyclodextrin Functionalized Quantum Dots <i>via</i> Multivalent Supramolecular Coupling (2009)

Supramolecular microcontact printing was used to obtain controlled patterns consisting of quantum dots (QDs) functionalized at their periphery with beta-cyclodextrin (beta-CD) in combination with adamantyl terminated dendrimeric "glues". Functionalization of core--shell CdSe/ZnS QDs was achieved by surface ligation. Immobilization of the QDs from solution onto glass substrates printed with (a) adamantyl-terminated poly(propylene imine) dendrimers and (b) via direct microcontact printing of QDs onto the dendrimer layer both yielded stable and robust multilayer structures. The stability of the patterns was primarily due to multivalent supramolecular host--guest interactions between beta-CD located at the QD surface and adamantyl groups at the dendrimer periphery as the dendrimers acted as a "supramolecular glue". The surface-immobilized QDs were capable of forming host--guest complexes with other molecules of interest at binding cavities not occupied by adamantyl groups. Complex formation with ferrocene-functionalized molecules at these sites led to partial quenching of the luminescence emission of QDs demonstrating the principle for sensing using the QD multilayer structures.
The Pivotal Role of CXCR7 in Stabilization of the Pulmonary Epithelial Barrier in Acute Pulmonary Inflammation (2017)

Acute pulmonary inflammation is still a frightening complication in intensive care units and has a high mortality. Specific treatment is not available, and many details of the pathomechanism remain unclear. The recently discovered chemokine receptor CXCR7 and its ligand stromal cell-derived factor (SDF)-1 are known to be involved in inflammation. We chose to investigate the detailed role of CXCR7 in a murine model of LPS inhalation. Inflammation increased pulmonary expression of CXCR7, and the receptor was predominantly expressed on pulmonary epithelium and on polymorphonuclear neutrophil (PMNs) after transepithelial migration into the alveolar space. Specific inhibition of CXCR7 reduced transepithelial PMN migration by affecting the expression of adhesion molecules. CXCR7 antagonism reduced the most potent PMN chemoattractants CXCL1 and CXCL2/3. After inhibiting CXCR7, NF-κB phosphorylation was reduced in lungs of mice, tight junction formation increased, and protein concentration in the bronchoalveolar lavage diminished, showing the impact of CXCR7 on stabilizing microvascular permeability. In vitro studies with human cells confirmed the pivotal role of CXCR7 in pulmonary epithelium. Immunofluorescence of human lungs confirmed our in vivo data and showed an increase of the expression of CXCR7 in pulmonary epithelium. Highlighting the clinical potential of CXCR7 antagonism, nebulization of the agent before and after the inflammation showed impressive anti-inflammatory effects. Additional CXCR7 inhibition potentiated the effect of SDF-1 antagonism, most probably by downregulating SDF-1 and the second receptor of the chemokine (CXCR4) expression. In conclusion, our data identified the pivotal role of the receptor CXCR7 in pulmonary inflammation with a predominant effect on the pulmonary epithelium and PMNs.
U.S. Economy Faces New Environment (1970)

(1970). U.S. Economy Faces New Environment. Financial Analysts Journal: Vol. 26, No. 1, pp. 22-24.
Cellular Stress Responses, The Hormesis Paradigm, and Vitagenes: Novel Targets for Therapeutic Intervention in Neurodegenerative Disorders (2010)

Despite the capacity of chaperones and other homeostatic components to restore folding equilibrium, cells appear poorly adapted for chronic oxidative stress that increases in cancer and in metabolic and neurodegenerative diseases. Modulation of endogenous cellular defense mechanisms represents an innovative approach to therapeutic intervention in diseases causing chronic tissue damage, such as in neurodegeneration. This article introduces the concept of hormesis and its applications to the field of neuroprotection. It is argued that the hormetic dose response provides the central underpinning of neuroprotective responses, providing a framework for explaining the common quantitative features of their dose-response relationships, their mechanistic foundations, and their relationship to the concept of biological plasticity, as well as providing a key insight for improving the accuracy of the therapeutic dose of pharmaceutical agents within the highly heterogeneous human population. This article describes in mechanistic detail how hormetic dose responses are mediated for endogenous cellular defense pathways, including sirtuin and Nrf2 and related pathways that integrate adaptive stress responses in the prevention of neurodegenerative diseases. Particular attention is given to the emerging role of nitric oxide, carbon monoxide, and hydrogen sulfide gases in hormetic-based neuroprotection and their relationship to membrane radical dynamics and mitochondrial redox signaling.
Terminal-oriented model for merged transistor logic (MTL) (1974)

A simple device model is derived to represent merged transistor logic (MTL) circuit behavior. Using the Ebers-Moll equations, the proper definitions of the various current gains are derived, and it is shown that MTL devices can be basically interpreted as n-p-n transistors having an additional base current source. The relations between the intensity of this source and the current actually supplied are derived. Time behavior is modeled according to the charge control concept. Using this model, circuit delays are given as a function of current gains, collector and emitter time constants, supply current, and of fan-out.
High performance submicron inversion-type enhancement-mode InGaAs MOSFETs with ALD Al<inf>2</inf>O<inf>3</inf>, HfO<inf>2</inf> and HfAlO as gate dielectrics (2007)

High-performance inversion-type enhancement-mode n-channel In <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">0.53</sub> Ga <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">0.47</sub> As MOSFETs with atomic layer deposited (ALD) Al <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> O <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sub> , HfO <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> , and HfAlO as gate dielectrics are demonstrated. The ALD process on III-V compound semiconductors enables the formation of high-quality gate oxides and unpinning of Fermi level on III-V in general. A 0.5-mum gate-length MOSFET with an Al <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> O <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sub> gate oxide thickness of 8 nm shows a maximum drain current of 430 mA/mm and a transconductance of 160 mA/mm at drain voltage of 2 V. The transconductance is improved to 180 mA/mm by implementing HfO <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> or HfAlO as gate dielectrics with the same oxide thickness. The peak effective mobility is -1200 cm <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> /Vs from dc measurement, ~ 4000 cm <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> /Vs after interface trap correction for HfO <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> /In <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">0.53</sub> Ga <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">0.47</sub> As NMOSFETs.
GASTRIN RELEASE BY BOMBESIN IN THE DOG (1974)

1 The intravenous infusion of bombesin produced in intact dogs and, more strikingly in dogs provided with gastric fistulae a sharp increase in plasma levels of immunoreactive gastrin and at the same time a stimulation of gastric acid secretion. Gastrin response was correlated with the dose of bombesin from approximately 0.1 mug kg(-1) h(-1) (threshold) to 1 mug kg(-1) h(-1) (maximum gastrin release).2 Atropine and metiamide reduced or inhibited gastric acid secretion stimulated by bombesin, but did not affect the rise in gastrin levels.3 Acidification of the whole stomach or of a perfused antral pouch caused a reduced or delayed response to bombesin. However, the inhibitory effect of acidification could be surmounted by prolonging the duration of bombesin infusion.4 Antrectomy greatly reduced the rise in gastrin levels and the increase in acid gastric secretion produced by bombesin, but left unaffected the gastric secretagogue effect of pentagastrin.5 It is concluded that bombesin is a potent releaser of gastrin from the antral mucosa.6 The possible influence of the renal effects evoked by bombesin in the dog on the gastrin response to the polypeptide is discussed.
Towards the integration of programming by demonstration and programming by instruction using golog (2010)

We present a formal approach for combining programming by demonstration (PbD) with programming by instruction (PbI)—a largely unsolved problem. Our solution is based on the integration of two successful formalisms: version space algebras and the logic programming language Golog. Version space algebras have been successfully applied to programming by demonstration. Intuitively, a version space describes a set of candidate procedures and a learner filters this space as necessary to be consistent with all given demonstrations of the target procedure. Golog, on the other hand, is a logical programming language defined in the situation calculus that allows for the specification of non-deterministic programs. While Golog was originally proposed as a means for integrating programming and automated planning, we show that it serves equally well as a formal framework for integrating PbD and PbI. Our approach is the result of two key insights: (a) Golog programs can be used to define version spaces, and (b) with only a minor augmentation, the existing Golog semantics readily provides the update-function for such version spaces, given demonstrations. Moreover, as we will show, two or more programs can be symbolically synchronized, resulting in the intersection of two, possibly infinite, version spaces. The framework thus allows for a rather flexible integration of PbD and PbI, and in addition establishes a new connection between two active research areas, enabling cross-fertilization. 1