gebhart/patrepeval huggingface dataset:
A/D converters nonlinearity measurement and correction by frequency analysis and dither (2003)

In the paper a new frequency-domain approach to measure and correct the static nonlinearity error of A/D converters is analyzed. The nonlinearity is (i) measured as a linear combination of Chebyshev polynomial, whose coefficients are derived via frequency-domain analysis, and (ii) corrected with a nonlinear equation solving method, which makes use of the parametric form of the static characteristic. The proposed methodology is especially suited for dithered converters, due to their particular features of smoother nonlinearity and very high resolution. Both simulation and experimental results are reported, quantifying also the achieved increase of effective bits.
Modal-noise-induced signal-to-noise ratios in optical fibers (1982)

Get PDF Email Share Share with Facebook Tweet This Post on reddit Share with LinkedIn Add to CiteULike Add to Mendeley Add to BibSonomy Get Citation Copy Citation Text A. Weierholt, A. R. Mickelson, D. Thingbo, and A. Berg, "Modal-noise-induced signal-to-noise ratios in optical fibers," in Optical Fiber Communication, 1982 OSA Technical Digest Series (Optica Publishing Group, 1982), paper ThFF5. Export Citation BibTex Endnote (RIS) HTML Plain Text Citation alert Save article
Thermal fragmentation of 3-alkyl-2-phenyloxetanes, 3,3-dimethyl-2-aryloxetanes, and related compounds. A case study of 2-aryl-substituted oxetanes (1981)

Thermolyses of epimeric 3-alkyl-2-phenyloxetanes (1c, 1t, 2c, 2t, 3c, and 3t), 3,3-dimethyl-2-aryloxetanes (4, 5, 6, 7, and 8), 3,3,4,4-tetramethyl-2,2-diphenyloxetane (9), and 3,3-dimethyl-2,2-diphenyloxetane (10) were studied in degassed N,N,N′,N′-tetramethylethylenediamine at 270–350 °C. Although the fragmentation of 9 and 10 can be understandable on the basis of a diradical mechanism, there were several observations, in the reaction of certain other oxetanes, which could hardly be explained simply in terms of such a mechanism. Namely, (1) less strained 1t reacted faster than more strained 1c; (2) a major mode of the fragmentation for 1c, 2c, and 3c was "B" (forming an alkene and benzaldehyde), whereas that for 1t, 2t, and 3t was "A" (forming an alkenylbenzene and formaldehyde); (3) the apparent energy of activation for the "B" process seemed to be larger than that for the "A"; (4) a dramatic change of the major fragmentation mode from "B" to "A" was brought about by a substituent on the phenyl group, as was observed in 4–8. These results may be explained reasonably by assuming that the fragmentation proceeds, at least, in dual reaction courses. In competition with an anticipated diradical pathway, there will be another process, which is energetically little more favorable than the diradical fragmentation, rather specific to the "A" mode of fragmentation, and important particularly in the reaction of the trans isomers. Probable candidates for the second process are discussed.
Production of granulocyte-macrophage colony-stimulating factor by cultured human tracheal epithelial cells. (1992)

We have evaluated the capacity of cultured human respiratory epithelial cells (HTE) to produce granulocyte-macrophage colony-stimulating factor (GM-CSF) and have examined the ability of proinflammatory stimuli and of glucocorticoids to modulate the production of GM-CSF by these cells. Conditioned medium (CM) was obtained after 24-hr culture of HTE in the presence or absence of serum (5%) and was assayed for GM-CSF activity using the M-07e cell line, which proliferates in response to GM-CSF and interleukin-3 (IL-3). HTE produced 1.1 +/- 0.7 and 2.1 +/- 1.5 ng GM-CSF/10(6) cells in the presence or absence of serum, respectively (n = 4). The identity of this activity as GM-CSF was established by neutralization with specific antibody to GM-CSF, while antibody to IL-3 was without effect. Dexamethasone (10(-6) M) inhibited basal GM-CSF release to below the limit of detection of the assay (0.12 ng GM-CSF/ml conditioned media). GM-CSF release was significantly enhanced by 10(-6) M histamine (1.6 +/- 0.7 versus 2.13 +/- 0.8 ng GM-CSF/10(6) cells; n = 9) and 5 ng/ml interleukin-1 (IL-1) (0.6 +/- 0.2 versus 3.2 +/- 0.5 ng GM-CSF/10(6) cells; n = 3). Stimulation of GM-CSF release by IL-1 was dose-dependent. A significant increase in GM-CSF activity was observed with 0.1 ng/ml, while maximal stimulation occurred at 5 ng/ml IL-1. In kinetic studies, GM-CSF activity was first detected in CM from cells incubated in the absence of stimulus at 8 hr of incubation, and continued to increase up to 24 hr. IL-1 stimulated GM-CSF activity was detected in CM as early as 4 hr and continued to increase significantly up to 24 hr. Thus, human tracheal epithelial cells release GM-CSF and this release is regulated by inflammatory mediators and glucocorticoids.
Effects of Rice Seed Surface Sterilization with Hypochlorite on Inoculated <i>Burkholderia vietnamiensis</i> (2001)

When a combination of hydrogen peroxide and hypochlorite was used to surface sterilize rice seeds, a 10(2)- to 10(4)-fold decrease in CFU was observed during the first 15 h after inoculation of the rice rhizosphere organism Burkholderia vietnamiensis TVV75. This artifact could not be eliminated simply by rinsing the seeds, even thoroughly, with sterile distilled water. When growth resumed, a significant increase in the frequency of rifampin- and nalidixic acid-resistant mutants in the population was observed compared to the control without seeds. This phenomenon was a specific effect of hypochlorite; it was not observed with hydrogen peroxide alone. It was also not observed when the effect of hypochlorite was counteracted by sodium thiosulfate. We hypothesized that the hypochlorite used for disinfection reacted with the rice seed surface, forming a chlorine cover which was not removed by rinsing and generated mutagenic chloramines. We studied a set of rifampin- and nalidixic acid-resistant mutants obtained after seed surface sterilization. The corresponding rpoB and gyrA genes were amplified and sequenced to characterize the induced mutations. The mutations in five of seven nalidixic acid-resistant mutants and all of the rifampin-resistant mutants studied were found to correspond to single amino acid substitutions. Hypochlorite surface sterilization can thus be a source of artifacts when the initial bacterial colonization of a plant is studied.
A Critical Evaluation of the Experimental Design of Studies of Mechanism Based Enzyme Inhibition, with Implications for In Vitro-In Vivo Extrapolation (2006)

The published literature on mechanism based inhibition (MBI) of CYPs was evaluated with respect to experimental design, methodology and data analysis. Significant variation was apparent in the dilution factor, ratio of preincubation to incubation times and probe substrate concentrations used, and there were some anomalies in the estimation of associated kinetic parameters (k(inact), K(I), r). The impact of the application of inaccurate values of k(inact) and K(I) when extrapolating to the extent of inhibition in vivo is likely to be greatest for those compounds of intermediate inhibitory potency, but this also depends on the fraction of the net clearance of substrate subject to MBI and the pre-systemic and systemic exposure to the inhibitor. For potent inhibitors, the experimental procedure is unlikely to have a material influence on the maximum inhibition. Nevertheless, the bias in the values of the kinetic parameters may influence the time for recovery of enzyme activity following re-synthesis of the enzyme. Careful attention to the design of in vitro experiments to obtain accurate kinetic parameters is necessary for a reliable prediction of different aspects of the in vivo consequences of MBI. The review calls for experimental studies to quantify the impact of study design in studies of MBI, with a view to better harmonisation of protocols.
Optical gas detection using metal film enhanced leaky mode spectroscopy (1993)

Sensors based on fiber optics or optical waveguides are finding increasing interest for applications in aggressive environments, in the vicinity of high electric fields, or in areas where miniaturization is a necessity. Many of these optical sensors utilize interaction of evanescent fields with the environment. If the optical component is made of a polymer, the ability of polymers to ad- or absorb vapors can be utilized for the sensing of such vapors. This is based on changes in refractive indices or anisotropy upon interaction with the vapor.
A codesign experiment in acoustic echo cancellation (1997)

Continuous advances in processor and ASIC technologies enable the integration of more and more complex embedded systems. Embedded systems have become commonplace in recent years. Since their implementations generally require the use of heterogeneous resources (e.g., processor cores, ASICs) in one system with hard design constraints, the importance of hardware/software codesign methodologies increases steadily. HW/SW codesign approaches consist generally of HW/SW partitioning and scheduling, constrained code generation, and hardware and interface synthesis. This article presents the codesign of an industrial experiment in acoustic echo cancellation (GMDFα algorithm); and emphasizes the partitioning and communication synthesis steps. This experiment brings to light interesting problems such as data and program distribution between system memories and the modeling of communications in the partitioning process
The Mechanism of Action of Avermectins in Caenorhabditis Elegans: Correlation between Activation of Glutamate-Sensitive Chloride Current, Membrane Binding, and Biological Activity (1995)

Xenopus laevis oocytes were injected with mRNA isolated from the free-living nematode Caenorhabditis elegans and the activation and potentiation of a glutamate-sensitive chloride current by a series of avermectin analogs and milbemycin D were determined. There was a strong correlation between the EC50 value determined for current activation in oocytes, the LD95 value for nematocidal activity, and also for the Ki value determined in a [3H]ivermectin competition binding assay. Four of the analogs were tested for potentiation of glutamate-sensitive current and the rank order for potentiation correlated with the EC50 for direct activation of current. We conclude that avermectins and milbemycins mediate their nematocidal effects on C. elegans via an interaction with a common receptor molecule, glutamate-gated chloride channels.
Use of electrospray mass spectrometry to directly observe an acyl enzyme intermediate in β‐lactamase catalysis (1990)

Electrospray mass spectrometry was used to directly observe intact acyl enzyme complexes formed between a class C beta-lactamase (from Enterobacter cloacae P99) and four poor substrates/inhibitors. In each case the molecular weight difference between the unreacted and the reacted beta-lactamase was consistent with the formation of an acyl enzyme.
p38 MAPK Signaling in Pemphigus: Implications for Skin Autoimmunity (2013)

p38 mitogen activated protein kinase (p38 MAPK) signaling plays a major role in the modulation of immune-mediated inflammatory responses and therefore has been linked with several autoimmune diseases. The extent of the involvement of p38 MAPK in the pathogenesis of autoimmune blistering diseases has started to emerge, but whether it pays a critical role is a matter of debate. The activity of p38 MAPK has been studied in great detail during the loss of keratinocyte cell-cell adhesions and the development of pemphigus vulgaris (PV) and pemphigus foliaceus (PF). These diseases are characterised by autoantibodies targeting desmogleins (Dsg). Whether autoantibody-antigen interactions can trigger signaling pathways (such as p38 MAPK) that are tightly linked to the secretion of inflammatory mediators which may perpetuate inflammation and tissue damage in pemphigus remains unclear. Yet, the ability of p38 MAPK inhibitors to block activation of the proapoptotic proteinase caspase-3 suggests that the induction of apoptosis may be a consequence of p38 MAPK activation during acantholysis in PV. This review discusses the current evidence for the role of p38 MAPK in the pathogenesis of pemphigus. We will also present data relating to the targeting of these cascades as a means of therapeutic intervention.
Role of LIM and SH3 Protein 1 (LASP1) in the Metastatic Dissemination of Medulloblastoma (2010)

Medulloblastoma is the most common malignant pediatric brain tumor and is one of the leading causes of cancer-related mortality in children. Treatment failure mainly occurs in children harboring metastatic tumors, which typically carry an isochromosome 17 or gain of 17q, a common hallmark of intermediate and high-risk medulloblastoma. Through mRNA expression profiling, we identified LIM and SH3 protein 1 (LASP1) as one of the most upregulated genes on chromosome 17q in tumors with 17q gain. In an independent validation cohort of 101 medulloblastoma samples, the abundance of LASP1 mRNA was significantly associated with 17q gain, metastatic dissemination, and unfavorable outcome. LASP1 protein expression was analyzed by immunohistochemistry in a large cohort of patients (n = 207), and high protein expression levels were found to be strongly correlated with 17q gain, metastatic dissemination, and inferior overall and progression-free survival. In vitro experiments in medulloblastoma cell lines showed a strong reduction of cell migration, increased adhesion, and decreased proliferation upon LASP1 knockdown by small interfering RNA-mediated silencing, further indicating a functional role for LASP1 in the progression and metastatic dissemination of medulloblastoma.
Role of Meiosis-Activating Sterols in Rat Oocyte Maturation: Effects of Specific Inhibitors and Changes in the Expression of Lanosterol 14α-Demethylase During the Preovulatory Period1 (2001)

In vitro studies on mouse oocytes have shown that two closely related sterols, subsequently named meiosis-activating sterols (MAS), can overcome the inhibitory effect of hypoxanthine on the resumption of meiosis. These sterols are synthesized by cytochrome P(450) lanosterol 14alpha-demethylase (LDM), a key enzyme in cholesterol biosynthesis. We have used specific inhibitors of LDM, azalanstat (RS-21607) and RS-21745, to test whether MAS is an obligatory mediator in the resumption of meiosis in the rat. Addition of azalanstat and RS-21745 (1-200 microM) to culture medium of rat isolated cumulus-enclosed oocyte and preovulatory follicle-enclosed oocyte stimulated by LH/hCG did not allow separation between their inhibition of the resumption of meiosis and the degeneration of oocytes. In both models, doses of the drug that inhibited oocyte maturation also increased oocyte degeneration. The inhibitors only partially suppressed follicular progesterone production. We have examined by reverse transcriptase-polymerase chain reaction, Western blotting, and immunocytochemistry the ovarian expression of LDM mRNA and protein during the preovulatory period. We did not find evidence for the stimulation of this enzyme by LH/hCG. The strongest staining by LDM antiserum was obtained in primordial and primary oocytes, and the staining was reduced with oocyte growth. In addition, strong LDM staining could be observed in some of the granulosa cells, especially of the corona radiata localized in close proximity to the oocyte. In conclusion, our results with specific inhibitors and molecular approaches do not reveal evidence to support the hypothesis that MAS is an obligatory step in the stimulation of the resumption of meiosis. Specific inhibitors of MAS synthesis did not prevent spontaneous or LH-stimulated meiosis at doses that have previously been shown to effectively suppress LDM activity. Much higher concentrations of the inhibitors, which affected meiosis, were detrimental to oocytes, leading to their degeneration. The timing of LDM expression in the ovary was incompatible with a role for MAS in meiosis. Finally, the preferential localization of LDM protein to the oocytes suggests MAS production in oocytes rather than its transport from the somatic compartment as implied by the proposed role of MAS as a cumulus-oocyte signal molecule.
Superparamagnetism and Exchange Anisotropy in Microparticles of Magnetite Embedded in an Inert Carbonaceous Matrix (1971)

By the controlled thermal degradation of ferricinium nitrate a material composed of iron oxide particles embedded in an inert carbonaceous matrix was obtained. The iron oxide particles were found to be mostly magnetite, and their average diameter about 35 Å. This value was obtained from both x-ray diffraction line broadening and from static magnetic measurements. The small particle size caused the material to be superparamagnetic down to and below liquid-nitrogen temperature. At liquid-helium temperature the material was ferromagnetic and exhibited exchange anisotropy in the form of a shifted hysteresis loop. A coupling energy of 2.28×105 erg/cm3 was calculated from the shifted hysteresis loop. EPR and Mössbauer-effect spectra showed electron hopping at room temperature within the Fe3O4. In the ferromagnetic state, local disorder around the magnetic ions manifests itself as broadening of the Mössbauer spectra and displacement of the hysteresis loop.
1100 W Yb:YAG femtosecond Innoslab amplifier (2011)

Laser sources of high average power are essential to transfer femtosecond technology to industrial applications. We demonstrate a compact diode-pumped Yb:KGW femtosecond oscillator-Yb:YAG Innoslab amplifier MOPA with nearly transform and diffraction limited 636 fs pulses at 620 W average output power and 20 MHz repetition rate. By cascading two amplifiers an average output power of 1.1 kW and peak power of 80 MW is achieved in a single, linearly polarized beam. The MOPA is operated at room temperature and no CPA technique is used. The specific properties of Innoslab MOPAs are compared with fibers and thin-disks.
The Fat and Warts signaling pathways: new insights into their regulation,mechanism and conservation (2008)

A cassette of cytoplasmic Drosophila tumor suppressors, including the kinases Hippo and Warts, has recently been linked to the transmembrane tumor suppressor Fat. These proteins act within interconnected signaling pathways, the principal functions of which are to control the growth and polarity of developing tissues. Recent studies have enhanced our understanding of the basis for signal transduction by Fat and Warts pathways, including the identification of a DNA-binding protein at the end of the pathway, have established the conservation of Fat and Warts signaling from flies to mammals, and have given us new insights into their regulation and biological functions.
Human Pancreatic Cancer Tumors Are Nutrient Poor and Tumor Cells Actively Scavenge Extracellular Protein (2015)

Glucose and amino acids are key nutrients supporting cell growth. Amino acids are imported as monomers, but an alternative route induced by oncogenic KRAS involves uptake of extracellular proteins via macropinocytosis and subsequent lysosomal degradation of these proteins as a source of amino acids. In this study, we examined the metabolism of pancreatic ductal adenocarcinoma (PDAC), a poorly vascularized lethal KRAS-driven malignancy. Metabolomic comparisons of human PDAC and benign adjacent tissue revealed that tumor tissue was low in glucose, upper glycolytic intermediates, creatine phosphate, and the amino acids glutamine and serine, two major metabolic substrates. Surprisingly, PDAC accumulated essential amino acids. Such accumulation could arise from extracellular proteins being degraded through macropinocytosis in quantities necessary to meet glutamine requirements, which in turn produces excess of most other amino acids. Consistent with this hypothesis, active macropinocytosis is observed in primary human PDAC specimens. Moreover, in the presence of physiologic albumin, we found that cultured murine PDAC cells grow indefinitely in media lacking single essential amino acids and replicate once in the absence of free amino acids. Growth under these conditions was characterized by simultaneous glutamine depletion and essential amino acid accumulation. Overall, our findings argue that the scavenging of extracellular proteins is an important mode of nutrient uptake in PDAC.
Metastatic Potential of Mouse Lewis Lung Cancer Cells Is Regulated via Ganglioside GM1 by Modulating the Matrix Metalloprotease-9 Localization in Lipid Rafts (2006)

To analyze mechanisms for cancer metastasis, we established high metastatic sublines from mouse Lewis lung cancer (P29) by repeated injection. Sublines established from the two subclones H7 and C4 commonly exhibited increased proliferation and invasion activity and reduced expression of ganglioside GM1, although they showed different preferences in their target organs of metastasis. The high metastatic sublines secreted higher levels of activated matrix metalloprotease (MMP)-9 as well as pro-MMP-9 in the culture medium than the parent lines. Furthermore, they contained MMP-9 at the glycolipid-enriched microdomain (GEM)/rafts fractionated by the sucrose density gradient ultracentrifugation of Triton X-100 extracts, whereas the parent cells showed faint bands at the fraction. When high metastatic sublines were treated with methyl-beta-cyclodextrin, their invasion activities were dramatically suppressed, and the MMP-9 secretion was also suppressed. All these results indicated that GEM/rafts play crucial roles in the increased invasion and high metastatic potential. To clarify the implication of reduced GM1 expression, low GM1-expressing cell lines were established using an RNA interference-expression vector of the GM1 synthase. Low GM1-expressing cell lines showed increased proliferation and invasion, enrichment in the GEM/rafts, and increased secretion of MMP-9. Among adhesion molecules, only integrin beta1 was detected in GEM/rafts with stronger intensity in high metastatic lines and low GM1-expressing cells. Taken together, integrins seemed to be enriched in the GEM/rafts by reduced GM1 levels, and subsequently MMP-9 was recruited to the GEM/rafts, resulting in its efficient secretion and activation, and eventually in the increased invasion and metastatic potentials.
Dopaminergic system genes in childhood aggression: Possible role for DRD2 (2011)

Our preliminary results suggest that three polymorphisms in DRD2 are associated with childhood aggression. Future studies are required to replicate the current results and to further explore the relationship between the dopamine system and aggressive behaviour in children.
Design of a cholesteric liquid crystal cell for a high-transmittance light shutter (2014)

Recently, active studies on a transparent organic light-emitting diode (OLED) are in progress as a next generation display. However, since it is not possible to obtain a dark state using a transparent OLED, it exhibits poor visibility. This inevitable problem can be solved by placing a light shutter behind a transparent OLED display. In this paper, we propose a light shutter using dye-doped liquid crystals (LCs) whose Bragg reflection wavelength is chosen to be infrared by controlling the pitch of cholesteric liquid crystals (ChLCs). The proposed light shutter is switchable between the dark planar state and the transparent homeotropic state. The proposed light shutter has the advantages of the high transmittance, low operation voltage, and easy fabrication process compared with previous light shutter devices using liquid crystals. It is expected that the proposed light shutter can be applied to realize high visibility transparent OLEDs and emerging smart windows.