gebhart/patrepeval huggingface dataset:
Cooperative interference-aware joint scheduling for the 3GPP LTE uplink (2010)

In current cellular networks base stations (BSs) usually perform independent scheduling without coordinating the resource allocation among different cells. This, however, often leads to high interference levels in cellular networks operating with universal frequency reuse, such as the 3GPP UTRAN Long Term Evolution (LTE). Coordinated scheduling between different BSs may mitigate this problem by taking interference from and to nearby BSs into account in order to avoid high interference situations, especially for user equipments (UEs) located near the cell-edge. For that purpose, we propose in this paper a novel interference-aware joint scheduling scheme based on proportional fairness for the uplink of a 3GPP UTRAN LTE system, where different BSs cooperate with each other via a fast backhaul network in order to jointly allocate frequency resources to the various UEs, taking the caused inter-cell interference into account. Furthermore, we propose an efficient method for dynamic interference coordination based on the standardized high interference indicator and we compare the achievable performance with this approach to a system with interference-aware joint scheduling. It is shown that our joint scheduling scheme outperforms a dynamic interference coordination scheme and that it yields significant gains over a conventional LTE Release 8 system without any interference coordination.
Creating CASE tools by re-engineering Ada compilers (2002)

Many CASE tools require Ada source code analysis similar to the semantic analysis that Ada compilers perform. Since this semantic analysis constitutes a large, complex portion of existing Ada compilers, re-engineering these Ada compiler parts to serve as CASE tool parts offers significant savings. This paper uses the author's experience with re-engineering an Ada compiler into an Ada PDL Processor tool to illustrate how the re-engineering effort involves automated compiler generation technology, semantic analysis modifications, and complex system partitioning challenges.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Clearance kinetics of solutes used to measure glomerular filtration rate (1999)

Agents used to measure glomerular filtration rate (GFR) give a biexponential plasma disappearance curve on multiple peripheral venous sampling between 20 min and 4 h after intravenous injection. These two exponentials are generally regarded to represent equilibration of agent throughout the extracellular fluid (ECF) space and renal clearance, respectively. In seven subjects undergoing diagnostic arteriography, arterial and antecubital venous plasma samples were obtained up to 60 min in five and up to 120 min in two following simultaneous intravenous injection of 99Tcm-diethylene triamine pentaacetate (99Tcm-DTPA) and inulin. The count rate from 99Tcm was simultaneously recorded over the calf with a collimated scintillation probe in five subjects up to 60 min post-injection. The arterial and venous time-concentration curves were interpolated and subtracted to give a curve of the arterio-venous (A-V) concentration difference, which was then integrated. Arterial time-concentration curves display three exponentials, the first of which has the largest amplitude and disappears by about 20 min. The A-V concentration difference becomes zero at about the same time. The integral of the A-V concentration difference, which represents activity in the interstitial space of the forearm, has a time course consistent with the second compartment of a model of two compartments in series (the first being plasma) and a time course that is reciprocally similar to the first exponential of the triexponential arterial plasma curve. The curve externally recorded by scintillation probe has a shape consistent with a signal that is the composite of interstitial 99Tcm-DTPA and plasma 99Tcm-DTPA activities. The arterial plasma clearance curve of GFR agents is triexponential; the first exponential reflects equilibration of agent between plasma and the interstitial space of carcass tissue (mainly muscle and skin). The second exponential is minor compared with the first; it is not clear what it represents. The third exponential reflects renal clearance.
Magnetostratigraphic constraints on two‐stage eruptions of the Emeishan continental flood basalts (2010)

Temporal and spatial variations of high and low contents of Ti basalts in the Permian Emeishan large igneous province (ELIP) of southwest China and Vietnam are crucial for modeling of continental basalt formation and the nature of mantle‐lithosphere interaction. A combined geochemical and magnetostratigraphic study was carried out at Yanyuan in the inner zone of the ELIP. Geochemical results indicate that the basalts are low‐Ti (LT) basalts (Ti/Y ∼ 484.2–511.4) in the Luomapu section and high‐Ti (HT) basalts (Ti/Y ∼ 558.2–658.9) in the Gongmushan section. Systematic paleomagnetic sampling and stepwise thermal demagnetization demonstrate that the higher temperature component shows two distinct characteristic remanent magnetizations with northeasterly upward and SWW downward directions. These results indicate a simple magnetostratigraphic normal and reversed polarity pattern from the lower and upper parts of the section, respectively. By comparing with available magnetostratigraphic and paleomagnetic data carried out in the ELIP, these results imply that the eruption of the Emeishan basalts can be divided into early (normal polarity subchron) and late (reversal subchron) stages. The early stage included LT basalts in the inner zone and most of the HT basalts in the intermediate and outer zones, and the late stage contained a part of LT and HT basalts in the upper parts of the sections in the inner zone and a few in the intermediate zone of the ELIP. Correlating with available Middle‐Late Permian magnetostratigraphy and the Permian magnetic time scale, the new magnetic polarity sequence result suggests that the ELIP formed over a very short time interval (<1 Myr).
Improved implementation of optical space domain reflectometry for characterizing the complex coupling coefficient of strong fiber Bragg gratings (2009)

Optical space domain reflectometry (OSDR) implemented with a novel interferometric characterization method is demonstrated to be an accurate technique for characterizing the complex coupling coefficient of strong fiber Bragg gratings. A theoretical model is also presented, incorporating the effect of the heat perturbation shape, which accurately predicts the measurement behavior. It is shown that the measurement accuracy and spatial resolution are dramatically improved by removing the effect of the heat perturbation shape on the reconstructed profile using a deconvolution technique. The improvement in accuracy is illustrated by the excellent agreement between a weak grating reconstructed with OSDR and the same grating reconstructed with optical frequency domain reflectometry and a layer-peeling method. Reconstruction of a strong grating with an integrated coupling coefficient, qL=8.14, demonstrates the utility of this technique.
Mining Frequent Subgraph Patterns from Uncertain Graph Data (2010)

In many real applications, graph data is subject to uncertainties due to incompleteness and imprecision of data. Mining such uncertain graph data is semantically different from and computationally more challenging than mining conventional exact graph data. This paper investigates the problem of mining uncertain graph data and especially focuses on mining frequent subgraph patterns on an uncertain graph database. A novel model of uncertain graphs is presented, and the frequent subgraph pattern mining problem is formalized by introducing a new measure, called expected support. This problem is proved to be NP-hard. An approximate mining algorithm is proposed to find a set of approximately frequent subgraph patterns by allowing an error tolerance on expected supports of discovered subgraph patterns. The algorithm uses efficient methods to determine whether a subgraph pattern can be output or not and a new pruning method to reduce the complexity of examining subgraph patterns. Analytical and experimental results show that the algorithm is very efficient, accurate, and scalable for large uncertain graph databases. To the best of our knowledge, this paper is the first one to investigate the problem of mining frequent subgraph patterns from uncertain graph data.
CASE-STUDY OF A XILINX SYSTEM GENERATOR DESIGN FLOW FOR RAPID DEVELOPMENT OF SDR WAVEFORMS (2005)

ABSTRACT This paper describes a case study examining two distinct design processes for implementation of FPGA-based software defined radio subsystems. We compare a traditional RTL design approach with a model-based design flow involving automatic code generation using System Generator. Both design processes were applied to the development of a common SATCOM waveform: Mil-Std-188-165a. Results indicate a 10:1 improvement in development efficiency using System Generator, based on quantitative comparison of the time consumed in developing system simulations, algorithm documentation, code design and debugging, hardware implementation, and algorithm verification. The time savings associated with performance analysis using hardware co-simulation is also assessed. 1. INTRODUCTION FPGAs have become widely used in the design of physical layer and baseband processing for software-defined radios. However, prevailing programming models, derived from design flows used to design ASICs, have traditionally limited accessibility of FPGA-based signal processing subsystems to designers with a background in chip design. This situation has been changing over the last five years with the emergence of a new class of FPGA programming flows based on high level modeling in MATLAB and Simulink. The Xilinx
Statistically optimal analysis of samples from multiple equilibrium states (2008)

We present a new estimator for computing free energy differences and thermodynamic expectations as well as their uncertainties from samples obtained from multiple equilibrium states via either simulation or experiment. The estimator, which we call the multistate Bennett acceptance ratio estimator (MBAR) because it reduces to the Bennett acceptance ratio estimator (BAR) when only two states are considered, has significant advantages over multiple histogram reweighting methods for combining data from multiple states. It does not require the sampled energy range to be discretized to produce histograms, eliminating bias due to energy binning and significantly reducing the time complexity of computing a solution to the estimating equations in many cases. Additionally, an estimate of the statistical uncertainty is provided for all estimated quantities. In the large sample limit, MBAR is unbiased and has the lowest variance of any known estimator for making use of equilibrium data collected from multiple states. We illustrate this method by producing a highly precise estimate of the potential of mean force for a DNA hairpin system, combining data from multiple optical tweezer measurements under constant force bias.
Respiratory effects in two-dimensional Fourier transform MR imaging. (1986)

Respiratory and other regular motions during two-dimensional Fourier transform magnetic resonance imaging produce image artifacts consisting of local blurring and more or less regularly spaced "ghost" images propagating along the direction of the phase-encoding magnetic field gradient. The patterns of these ghost artifacts can be understood in terms of the technique of image production and basic properties of the discrete Fourier transform. This understanding permits, without respiratory gating, production of images of improved quality in body regions in which there is significant respiratory motion. In particular, the ghosts can be maximally separated from the primary image by choosing intervals between phase-encoding gradient pulse increments that are equal to one-half the respiratory period; they can be minimally separated by choosing an interval equal to the respiratory period. Increasing the number of signal averages between each phase-encoding increment decreases the intensity of the ghosts.
Cluster Management in a Virtualized Server Environment (2008)

One of the most attractive topics of today is server visualization. Sever virtualization is not a new concept. However technologies and market demand are increasing the use of server virtualization amazingly. In this paper, we consider cluster management in virtualized environment to implement the virtualizing up and down model. Thus we identify some design considerations for constructing and managing cluster. And then we show architecture to support clustering of virtual nodes based on the DMTF standards.
BINARY GMSK: CHARACTERISTICS AND PERFORMANCE (1999)

International Telemetering Conference Proceedings / October 25-28, 1999 / Riviera Hotel and Convention Center, Las Vegas, Nevada
Pica: An ultra-light processor for high-throughput applications (2002)

Introduces Pica, a fine-grain, message-passing architecture designed to efficiently support high-throughput parallel applications. The architecture minimizes overhead for basic parallel operations. An operand-addressed context cache and round-robin task manager allow single-cycle task swaps. Fixed-sized activation contexts simplify storage management. Word-tag synchronization bits provide low-cost synchronization. The focus on high-throughput applications allows a small local memory (1024 36-bit words). A complete node (including memory) can be implemented using a fraction of a chip. A multi-node chip prototype (four nodes/chip) is being designed. In order to meet chip I/O requirements, a high-bandwidth 3D optical network is also being designed. Using recent developments in epitaxial liftoff of optoelectronic devices and through-chip transmission, a network is presented that provides 3.2 Gbit/s off-chip bandwidth.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Efficient conditional knockout targeting vector construction using co-selection BAC recombineering (CoSBR) (2015)

A simple and efficient strategy for Bacterial Artificial Chromosome (BAC) recombineering based on co-selection is described. We show that it is possible to efficiently modify two positions of a BAC simultaneously by co-transformation of a single-stranded DNA oligo and a double-stranded selection cassette. The use of co-selection BAC recombineering reduces the DNA manipulation needed to make a conditional knockout gene targeting vector to only two steps: a single round of BAC modification followed by a retrieval step.
Tumor-suppressive effects of neutral endopeptidase in androgen-independent prostate cancer cells. (2001)

Expression of neutral endopeptidase (NEP) 24.11 is diminished in metastatic, androgen-independent prostate cancers (PCs; C. N. Papandreou et al., NAT: MED:, 4: 50--57, 1998). To determine the effects on androgen-independent PC cells of overexpressing cell-surface NEP, an inducible tetracycline-regulatory gene expression system was used to stably introduce and express the NEP gene in androgen-independent TSU-Pr1 cells generating WT-5 cells, which expressed high levels of enzymatically active NEP protein when cultured in the absence of tetracycline. TN12 cells, which contain the identical vectors without the NEP gene and do not express NEP, were used as control. Expression of NEP in WT-5 cells after removal of tetracycline from the media resulted in a >80% inhibition in cell proliferation over a 1-week period (P < 0.005) compared with control cells. Tumor formation occurred in the prostate glands of orthotopically injected athymic mice killed at 30 days in 4 of 5 mice that were given injections of 2 x 10(6) WT-5 cells and were fed doxycycline (NEP suppressed), and in all mice that were given injections of TN12 cells and were fed with or without doxycycline. In contrast, only 1 of 5 mouse prostates developed a tumor in mice that were given injections of WT-5 cells and that did not receive doxycycline. Analysis of the mechanisms of NEP-induced growth suppression revealed that NEP expression in WT-5 cells induced a 4-fold increase in the number of PC cells undergoing apoptosis, and increased the expression of p21 tumor suppressor gene protein and the level of unphosphorylated retinoblastoma protein as determined by Western blot. Flow cytometric analysis show that induced NEP expression in WT-5 cells resulted in a G(1) cell cycle arrest. These data show that NEP can inhibit PC cell growth and tumorigenicity and suggest that NEP has potential as therapy for androgen-independent PC.
Genetic Contribution of CISH Promoter Polymorphisms to Susceptibility to Tuberculosis in Chinese Children (2014)

Tuberculosis (TB) is the leading cause of death due to an infectious disease worldwide, particularly in developing countries. A series of candidate genes have been suggested to be associated with development of TB disease. Among them, the human Cytokine-inducible Src homology 2(SH2) domain protein (CISH) gene has been very recently reported to be involved in T cell activation and differentiation in response to Mycobacterium tuberculosis infection. Here, we studied the association between CISH promoter polymorphisms and pediatric TB. A case-control study enrolled 352 TB patients and 527 healthy controls, who were of Han Chinese ethnicity and aged from 0.2 to 18 years. CISH gene promoter SNPs rs414171, rs622502 and rs809451 were genotyped in all subjects and transcriptional activity, mRNA level, and plasma cytokine level of subjects with different genotypes were further examined. Carriers with rs414171TT homozygotes and rs809451GC heterozygotes had a 1.78-fold (95% CI,1.16-2.74) and 1.86-fold (95% CI, 1.26-2.74) excess risk of developing TB compared to those with wild-type genotypes. A greater risk of TB disease was observed in population carrying C(-809451)-T(-414171)-C(-622502) haplotype (OR 3.66, 95% CI:2.12-6.32). The G(-809451)-A(-414171)-C(-622502)-containing CISH promoter drove a 5.43-fold increased reporter expression compared to the C(-809451)-T(-414171)-C(-622502)-containing counterpart in Hela cell lines (P = 0.0009). PBMCs carrying rs414171TT homozygotes and rs809451GC heterozygotes showed a reduced CISH mRNA level compared to cells carrying wild type genotypes. Individuals with the rs414171TT genotype had significantly increased IL-12p40 and IL-10 production. In conclusion, CISH promoter rs414171 and rs809451 polymorphisms may play a vital role in mediating individual susceptibility to tuberculosis.
Cognitive radio adaptation using particle swarm optimization (2008)

Abstract One of the basic capabilities of cognitive radio is to adapt the radio parameters according to the changing environment and user needs. This paper proposes a new adaptation method which uses particle swarm optimization (PSO) to optimize cognitive radio parameters given a set of objectives. The procedure of the proposed method is presented and multicarrier system is used for simulation analysis. Experimental results show that the proposed method performs far better than genetic algorithm (GA)‐based adaptation method in terms of convergence speed, converged fitness values, and stability. The proposed method can also provide the tradeoffs of the objective functions, and the resulting parameter configuration is consistent with the weights of the objective functions. Copyright © 2008 John Wiley & Sons, Ltd.
A modified D-max method to estimate heart rate at a ventilatory threshold during an incremental exercise test (2017)

The purpose of this study was to design a modified D-max method to determine heart rate at a ventilatory threshold (HRVT) and to investigate whether this method would be valid during incremental exercise tests. The HRVT was estimated from a new parameter defined as HR at the maximal difference point between linearly- and quadratically approximated HR trends (modified D-max method). HR and ventilatory gas data for 105 subjects (53 males and 52 females; 38.26 ± 12.06 years; 166.62 ± 8.21 cm; 65.31 ± 11.10 kg) were simultaneously collected during an incremental treadmill test to evaluate the validity of the modified D-max method. Reference HRVTs were manually identified from the ventilatory gas data by an experienced sports physiologist and compared with those estimated by the HR parameter. A strong positive correlation (r = 0.71, p <; 0.01) and a low HR difference of 9.94 ± 7.10 bpm between the reference and estimated HRVTs were obtained. The results indicate that the modified D-max method outperforms the conventional D-max method (r = 0.53, p <; 0.01), the three-piece linear regression lines method (r = 0.42, p <; 0.01), and the parallel straight line slope method (r = 0.57, p <; 0.01). Furthermore, the modified D-max method improves the predictive accuracy of HRVTs by combining its result with subject's age. The combined parameters have a strong positive correlation with the reference HRVTs (r = 0.74, p <; 0.01) and a lower HR difference of 9.40 ± 6.91 bpm. The results suggest that the modified D-max method is highly applicable to predicting HRVTs during incremental exercise tests and also improves HRVT detection accuracy by combining its result with the subject's age.
DNA Sequence Analyses Support the Role of Interrupted Gap Repair in the Origin of Internal Deletions of the Maize Transposon, <i>MuDR</i> (1996)

Previous research has demonstrated that the autonomous Cy transposon can activate the excision of Mu transposons. To determine the relationship between Cy and the more recently described autonomous Mu transposon, MuDR, a Cy transposon inserted at the mutable a1 allele, a1-m5216, was isolated and cloned. DNA sequence analyses established that this Cy insertion is identical to MuDR (Mu9, GenBank accession No.: m76978.gb-pl). Therefore, Cy will henceforth be termed MuDR:Cy. Defective derivatives of MuDR:Cy were isolated that had lost their capacity to activate their own excision or the excision of a Mu7 transposon. Most of these derivatives are nonautonomous transposons because they can excise, but only in the presence of unlinked MuDR:Cy transposons. Physical mapping and DNA sequence analyses have established that six of these defective derivatives carry internal deletions. It has been proposed previously that such deletions arise via interrupted gap repair. The DNA sequences of the break points associated with all four sequenced deletions are consistent with this model. The finding that three of the excision-defective derivatives carry deletions that disrupt the coding region of the mudrA (but not the mudrB) transcript supports the view that mudrA plays a role in the excision of Mu transposons.
Simple Amine/Pd(OAc)<sub>2</sub>-Catalyzed Suzuki Coupling Reactions of Aryl Bromides under Mild Aerobic Conditions (2004)

A new palladium catalyst (DAPCy) made from Pd(OAc)(2) and commercially available, inexpensive dicyclohexylamine has been developed for the Suzuki coupling reaction of aryl bromides with boronic acids to give the coupling products in good to high yields. The air-stable catalyst was characterized and well-defined by X-ray crystallography. A catalytic system involving DAPCy in dioxane demonstrates a temperature-dependent reactivity toward aryl bromides with different electronic substituents, and selectively couples electron-deficient aryl bromides with boronic acids over electron-rich ones at room temperature. Another catalytic system employing DAPCy in EtOH provides a general and convenient method to prepare biaryls from aryl bromides and boronic acids with a broad range of functional groups at room temperature and under aerobic conditions.