gebhart/patrepeval huggingface dataset:
Molecular Tectonics. Porous Hydrogen-Bonded Networks Built from Derivatives of 9,9‘-Spirobifluorene (2003)

Molecules with multiple sites that induce strong directional association tend to form open networks with significant volumes available for the inclusion of guests. Such molecules can be conveniently synthesized by grafting diverse sticky sites onto geometrically suitable cores. The characteristic inability of 9,9'-spirobifluorene to form close-packed crystals suggests that it should serve as a particularly effective core for the elaboration of molecules designed to form highly porous networks. To test this hypothesis, various new tetrasubstituted 9,9'-spirobifluorenes with hydrogen-bonding sites at the 3,3',6,6'-positions or 2,2',7,7'-positions were synthesized by multistep routes. Four of these compounds were crystallized, and their structures were determined by X-ray crystallography. In all cases, the compounds form extensively hydrogen-bonded networks with high porosity. In particular, 43% of the volume of crystals of 3,3',6,6'-tetrahydroxy-9,9'-spirobifluorene (28) is available for the inclusion of guests, whereas the porosity is only 28% in crystals of tetrakis(4-hydroxyphenyl)methane, a close model that lacks the spirobifluorene core. Similarly, the porosities found in crystals of 2,2',7,7'-tetra(acetamido)-9,9'-spirobifluorene (33) and 2,2',7,7'-tetrasubstituted tetrakis(diaminotriazine) 39 are 33% and 60%, respectively. Moreover, the porosity of crystals of 2,2',7,7'-tetrasubstituted tetrakis(triaminotriazine) 40 is 75%, the highest value yet observed in crystals built from small molecules. These observations demonstrate that a particularly effective strategy for engineering molecules able to form highly porous networks is to graft multiple sticky sites onto spirobifluorenes or other cores intrinsically resistant to close packing.
Evaluating the performance of active cache management schemes (2002)

In this paper we examine the performance of two multi-lateral cache schemes; one makes block allocation decisions correlated to the reference behavior of regions of memory (NTS), the other correlated to the reference behavior of memory accessing instructions (PCS). To determine the efficacy of exploiting these reference correlation schemes to improve cache management, we compare the performance of these multi-lateral schemes to a multi-lateral configuration that uses a near-optimal (but non-implementable) replacement policy, pseudo-opt. In addition to miss ratio, three metrics are used to evaluate the performance of these schemes, relative to pseudo-opt: 1) prediction accuracy in determining reference locality, 2) actual usage accuracy, i.e. how likely a block in an implementable scheme and the near-optimal scheme exhibit the same reuse characteristic, and 3) tour length of a line in the cache. Results show that while the NTS and PCS schemes outperform traditional cache management schemes, they fall short of the pseudo-opt performance; this is due to their simple prediction strategies and because their active management addresses only block allocation and not replacement.
Thrombin Activates Ras‐CREB/ATF‐1 Signaling and Stimulates c‐fos, c‐jun, and c‐myc Expression in Human Gingival Fibroblasts (2008)

PAR activation during gingival wounding or inflammation may stimulate Ras-CREB/ATF-1 signaling and c-fos, c-jun, and c-myc expression. This might be due to the proteinase activity of thrombin. These signaling events are important for wound healing and inflammatory responses in gingival tissues.
An insight into Decentralized Congestion Control techniques for VANETs from ETSI TS 102 687 V1.1.1 (2013)

Many cooperative applications designed to improve road safety rely on the frequent exchange of awareness messages among vehicles. Therefore, under high vehicle density, the channel medium is expected to get congested. To tackle this situation, the European Telecommunications Standards Institute (ETSI) specified a set of Decentralized Congestion Control (DCC) mechanisms that adapt the transmission parameters based on channel load measures. Due to some concerns about its effectiveness and stability, DCC and its overall philosophy are currently being revised and extended: all in all, DCC deserves additional investigations. For this purpose, in this paper a simulation analysis is presented, aiming at enriching the insight into the DCC behaviour, under a variety of channel load conditions and through the definition of both link- and application-layer performance metrics. Achieved results show that the DCC techniques are not really effective with the currently specified parameters settings; hence some hints are given to improve their performance.
Error Control Coding for Multilevel Cell Flash Memories Using Nonbinary Low-Density Parity-Check Codes (2009)

Conventional flash memories generally utilize simple error control codes, such as Hamming code and BCH code. In future high-density multilevel cell (MLC) flash memories, however, it is estimated that raw bit error rate (BER) will soar with increasing number of charge levels, and hence the conventional error control coding will not be sufficient for these memories. Low-density parity-check (LDPC) code is a class of strong error control codes which are adopted in practical wired/wireless communication systems, and hence the LDPC code is an important candidate for error control code in future MLC memories. Application of the LDPC code to MLC memory is not so straightforward as conventional error control codes because the LDPC code usually employs soft-input decoding to achieve low decoded BER, and hence analysis of the error probability is crucial, especially when nonbinary codes are applied. Therefore, this paper analyzes error characteristics of MLC flash memory from error control coding viewpoint, and then proposes an error control coding using nonbinary LDPC codes. Evaluation shows that the decoded BER of the nonbinary LDPC code is lower than that of conventional binary irregular LDPC code, and also demonstrates that nonbinary LDPC code defined by a parity-check matrix having average column weight w = 2.5 has lower decoded BER than nonbinary LDPC codes with w = 2 and 3.
Preparation of porous PLGA/Ti biphasic scaffold and osteochondral defect repair (2013)

In this study, a porous PLGA/Ti biphasic scaffold was prepared and its potential to repair osteochondral defects was evaluated. The microstructure and mechanical properties of porous PLGA and porous Ti and their interface were characterized. The as-prepared biphasic scaffolds were implanted into rabbit knees for 1 and 3 months (PLGA/Ti group), and the porous PLGA (PLGA group) or empty defect (Untreated group) was also used. The results showed that both porous PLGA and porous Ti had an interconnected porous structure. The mechanical strength of porous PLGA and porous Ti was similar to that of cartilage and subchondral bone, respectively. The interface analysis revealed that the as-prepared biphasic scaffold had good overall integrity and interface stability. The gross observation and histological evaluation of specimens showed that hyaline-like cartilage filled the defects to a certain extent at 3 months for both PLGA/Ti and PLGA groups while the defects remained in an untreated group. In the PLGA/Ti group, better cartilage and subchondral bone repair was observed, and quantitative macroscopic and histological score evaluations confirmed this result, indicating that the porous biphasic PLGA/Ti scaffold had good biocompatibility and the best osteochondral defect repair ability in this study. The as-prepared porous biphasic scaffold showed the potential to be used in osteochondral tissue engineering for osteochondral defect repair.
EGCG, a green tea polyphenol, improves endothelial function and insulin sensitivity, reduces blood pressure, and protects against myocardial I/R injury in SHR (2007)

Epigallocatechin gallate (EGCG), a bioactive polyphenol in green tea, may augment metabolic and vascular actions of insulin. Therefore, we investigated effects of EGCG treatment to simultaneously improve cardiovascular and metabolic function in spontaneously hypertensive rats (SHR; model of metabolic syndrome with hypertension, insulin resistance, and overweight). In acute studies, EGCG (1-100 microM) elicited dose-dependent vasodilation in mesenteric vascular beds (MVB) isolated from SHR ex vivo that was inhibitable by N(omega)-nitro-L-arginine methyl ester (L-NAME; nitric oxide synthase antagonist) or wortmannin [phosphatidylinositol (PI) 3-kinase inhibitor]. In chronic studies, 9-wk-old SHR were treated by gavage for 3 wk with EGCG (200 mg.kg(-1).day(-1)), enalapril (30 mg.kg(-1).day(-1)), or vehicle. A separate group of SHR receiving L-NAME (80 mg/l in drinking water) was treated for 3 wk with either EGCG or vehicle. Vasodilator actions of insulin were significantly improved in MVB from EGCG- or enalapril-treated SHR (when compared with vehicle-treated SHR). Both EGCG and enalapril therapy significantly lowered systolic blood pressure (SBP) in SHR. EGCG therapy of SHR significantly reduced infarct size and improved cardiac function in Langendorff-perfused hearts exposed to ischemia-reperfusion (I/R) injury. In SHR given L-NAME, beneficial effects of EGCG on SBP and I/R were not observed. Both enalapril and EGCG treatment of SHR improved insulin sensitivity and raised plasma adiponectin levels. We conclude that acute actions of EGCG to stimulate production of nitric oxide from endothelium using PI 3-kinase-dependent pathways may explain, in part, beneficial effects of EGCG therapy to simultaneously improve metabolic and cardiovascular pathophysiology in SHR. These findings may be relevant to understanding potential benefits of green tea consumption in patients with the metabolic syndrome.
Oral Hyposensitisation with Enteric-Coated Allergens as Extension Therapy following a Basic Subcutaneous Course of Injections (1987)

We investigated in grass-pollen-sensitive adults the efficacy and safety of a therapeutic hyposensitisation regimen consisting of a basic pre-seasonal course of tyrosine-absorbed glutaraldehyde-modified grass pollen extract (Pollinex), followed by oral extension treatment using encapsulated, particulate, enteric-coated grass pollen allergen. The daily recorded symptom scores both of these patients and of others treated with complete basic and extension courses of Pollinex indicated that both sets of patients had fared better during the grass pollen season than control patients who had received only the basic Pollinex injections.
Cobalt hexacyanoferrate supported on Sb-doped SnO<sub>2</sub>as a non-noble catalyst for oxygen evolution in acidic medium (2017)

Cobalt hexacyanoferrate on Sb-doped SnO<sub>2</sub>as a non-noble catalyst for O<sub>2</sub>evolution in acidic medium.
Programmed Cell Death in Human Ovary Is a Function of Follicle and Corpus Luteum Status* (1997)

Although extensive investigation on follicular apoptosis (programmed cell death) has been conducted in the infraprimate ovary, there is little information regarding apoptosis and its relationship to follicular status in the human. In this study, apoptosis was investigated in 116 human ovarian follicles (primordial to dominant) and 5 corpora lutea from a total of 27 premenopausal women. Follicles and corpora lutea were evaluated for the presence of DNA fragmentation, characteristic of apoptosis, by two methods: in situ hybridization using 3' end-labeling of DNA with digoxigenin-labeled nucleotides and subsequent digoxigenin antibody and peroxidase staining, and/or biochemical analysis of low molecular weight DNA laddering. Follicle functional status was evaluated by determining follicle sizes and follicular fluid androgen/estrogen (A/E) ratios. No apoptosis was observed in 67 primordial, primary, or secondary follicles. Positive staining for DNA fragmentation was found in a few granulosa cells in 0.1- to 2-mm follicles, whereas abundant staining in granulosa was detected in 2.1- to 9.9-mm follicles. In contrast, no DNA fragmentation was detected in dominant follicles (10-16 mm). The frequency of apoptosis in follicles was calculated to be 37% in 0.1- to 2-mm follicles, 50% in 2.1- to 5-mm follicles, and 27% in 5.1- to 9.9-mm follicles. Abundant low molecular weight DNA laddering was only found in androgen-dominant follicles and not in estrogen-dominant follicles. Positive staining for DNA fragmentation and low molecular weight DNA laddering were observed in degenerating but not healthy-appearing corpora lutea. In the former, DNA fragmentation was found primarily in large luteal cells. These data suggest that follicular atresia in human ovary results from normal programmed cell death and primarily occurs in the granulosa cell layers of the early antral and < 10-mm antral follicles primarily. Furthermore, because apoptosis occurs as early as the 200-mm stage, follicle selection may begin as early as the initial formation of the antrum. The results also suggest that degeneration of the corpus luteum occurs by apoptotic mechanisms.
Immune Checkpoint Inhibitors: New Insights and Current Place in Cancer Therapy (2015)

The treatment of cancer has largely relied on killing tumor cells with nonspecific cytotoxic therapies and radiotherapy. This approach, however, has limitations including severe systemic toxicities, bystander effects on normal cells, recurrence of drug-resistant tumor cells, and the inability to target micrometastases or subclinical disease. An increased understanding of the critical role of the immune system in cancer development and progression has led to new treatment strategies using various immunotherapies. It is now recognized that established tumors have numerous mechanisms of suppressing the antitumor immune response including production of inhibitory cytokines, recruitment of immunosuppressive immune cells, and upregulation of coinhibitory receptors known as immune checkpoints. This review focuses on the immune checkpoint inhibitors, a novel class of immunotherapy first approved in 2011. Our objective is to highlight similarities and differences among the three immune checkpoint inhibitors approved by the U.S. Food and Drug Administration-ipilimumab, pembrolizumab, and nivolumab-to facilitate therapeutic decision making. We conducted a review of the published literature and conference proceedings and present a critical appraisal of the clinical evidence supporting their use in the treatment of metastatic melanoma and advanced squamous non-small cell lung cancer (NSCLC). We also compare and contrast their current place in cancer therapy and patterns of immune-related toxicities, and discuss the role of dual immune checkpoint inhibition and strategies for the management of immune-related adverse events. The immune checkpoint inhibitors have demonstrated a dramatic improvement in overall survival in patients with advanced melanoma and squamous NSCLC, along with acceptable toxicity profiles. These agents have a clear role in the first-line treatment of advanced melanoma and in the second-line treatment of advanced squamous NSCLC.
Mild Decentration Measured by a Scheimpflug Camera and Its Impact on Visual Quality Following SMILE in the Early Learning Curve (2014)

This study suggests that, although mild decentration occurred in the early learning curve, good visual outcomes were achieved after the SMILE surgery. Special efforts to minimize induced vertical coma are necessary.
Rhesus Monkey Apolipoprotein(a) (1989)

Human lipoprotein(a) is a low density lipoprotein-like lipoprotein whose concentration in plasma is correlated with atherosclerosis. The characteristic protein component of lipoprotein(a) is apolipoprotein(a) (apo(a)) which is disulfide-linked to apolipoprotein B-100. Sequencing of rhesus monkey apo(a) cDNA suggests that this protein, like human apo(a), is highly similar to plasminogen. Sequence data suggests that a plasminogen-like protease activity and kringle 1-, 2-, 3-, and 5-like domains are unnecessary for apo(a) function, but a highly repeated kringle four-like domain is important. Liver is the major site of apo(a) RNA synthesis; reduced amounts of message were also found in testes and brain. Co-expression with apoB-100 and plasminogen in rhesus tissues is not mandatory.
Superconductivity (1999)

The history of superconductivity is reviewed, beginning with its discovery in 1911. Various theoretical approaches are discussed and are compared with experiment.DOI:https://doi.org/10.1103/RevModPhys.71.S313©1999 American Physical Society
The Effect of Weight Training Volume on Hormonal Output and Muscular Size and Function (1997)

ABSTRACTThis study examined the effects of different volumes of resistance training on muscle size and function over a 10-wk period. Low volume = 3 sets per muscle group per week; moderate = 6 sets; high = 12 sets. Twenty-seven men with 1–4 yrs weight training experience were randomly assigned to th
The Region between Amino Acids 245 and 265 of the Bovine Leukemia Virus (BLV) Tax Protein Restricts Transactivation Not Only via the BLV Enhancer but Also via Other Retrovirus Enhancers (2000)

Bovine leukemia virus (BLV) is associated with enzootic bovine leukosis and is closely related to human T-cell leukemia virus type 1 (HTLV-1). The Tax protein of BLV acts through the 5' long terminal repeat (LTR) of BLV and activates the transcription of BLV. In this study, we amplified tax genes from BLV-infected cattle using PCR. We cloned the genes and monitored the transcriptional activities of the products. Seven independent mutant Tax proteins, with at least one amino acid substitution between residues 240 and 265, exhibited a markedly stronger ability to stimulate the viral LTR-directed transcription than the wild-type Tax protein. Analysis of chimeric Tax proteins derived from wild-type and mutant Tax proteins clearly demonstrated that a single substitution between residue 240 and 265 might be critical for the higher activities of the Tax mutant proteins. Furthermore, it appeared that transient expression of a Tax mutant protein was better able to increase the production of viral proteins and particles from a defective recombinant proviral clone of BLV than was wild-type Tax. Analysis of mutations within the U3 region of the LTR revealed that a cyclic AMP-responsive element in Tax-responsive element 2 might be sufficient for the enhanced activation mediated by the mutant proteins. In addition to the LTR of BLV, other viral enhancers, such as the enhancers of HTLV-1 and of mouse mammary tumor virus, which cannot be activated by wild-type BLV Tax protein, were activated by a Tax mutant protein. Our observations suggest that the transactivation activity and target sequence specificity of BLV Tax might be limited or negatively regulated by the region of the protein between amino acids 240 and 265.
Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation (2008)

The eukaryotic genome is packaged as chromatin with nucleosomes comprising its basic structural unit, but the detailed structure of chromatin and its dynamic remodeling in terms of individual nucleosome positions has not been completely defined experimentally for any genome. We used ultra-high-throughput sequencing to map the remodeling of individual nucleosomes throughout the yeast genome before and after a physiological perturbation that causes genome-wide transcriptional changes. Nearly 80% of the genome is covered by positioned nucleosomes occurring in a limited number of stereotypical patterns in relation to transcribed regions and transcription factor binding sites. Chromatin remodeling in response to physiological perturbation was typically associated with the eviction, appearance, or repositioning of one or two nucleosomes in the promoter, rather than broader region-wide changes. Dynamic nucleosome remodeling tends to increase the accessibility of binding sites for transcription factors that mediate transcriptional changes. However, specific nucleosomal rearrangements were also evident at promoters even when there was no apparent transcriptional change, indicating that there is no simple, globally applicable relationship between chromatin remodeling and transcriptional activity. Our study provides a detailed, high-resolution, dynamic map of single-nucleosome remodeling across the yeast genome and its relation to global transcriptional changes.
Alterations at the rel locus in human lymphoma. (1991)

The rel proto-oncogene has been mapped to chromosome region 2p11.2-14, a site associated with nonrandom rearrangements in non-Hodgkin's lymphoma. We have characterized an abnormal rel mRNA from a cell line derived from a diffuse large cell lymphoma, in which the evolutionarily conserved N-terminal half of the rel coding region was fused with the C-terminal coding region of an unrelated gene. In addition, rearrangement or amplification of the rel locus was found in the lymphomatous tissue of two follicular and one diffuse large cell lymphoma. The findings suggest involvement of rel in the pathogenesis of large cell lymphoma.
Hydrodynamics of Hemostasis in Sickle-Cell Disease (2013)

Vaso-occlusion, the stoppage of blood flow in sickle-cell disease, is a complex dynamical process spanning multiple time and length scales. Motivated by recent ex vivo microfluidic measurements of hemostasis using blood from sickle-cell patients, we develop a multiphase model that couples the kinetics and hydrodynamics of a flowing suspension of normal and sickled cells in a fluid. We use the model to derive expressions for the cell velocities and concentrations that quantify the hydrodynamics of hemostasis, and provide simple criteria as well as a phase diagram for occlusion, consistent with our simulations and earlier observations.
Absence de transformation bactérienne des acides biliaires chez la truite arc-en-ciel, Saimo gairdneri, élevée à 16°C (1979)

Absence of bacterial conversion of bile acids in the rainbow trout, Salmo gairdneri, raised at 16 c.
Does the microbiota play a role in the pathogenesis of autoimmune diseases? (2014)

The microbiota of the human metaorganism is not a mere bystander. These microbes have coevolved with us and are pivotal to normal development and homoeostasis. Dysbiosis of the GI microbiota is associated with many disease susceptibilities, including obesity, malignancy, liver disease and GI pathology such as IBD. It is clear that there is direct and indirect crosstalk between this microbial community and host immune response. However, the precise mechanism of this microbial influence in disease pathogenesis remains elusive and is now a major research focus. There is emerging literature on the role of the microbiota in the pathogenesis of autoimmune disease, with clear and increasing evidence that changes in the microbiota are associated with some of these diseases. Examples include type 1 diabetes, coeliac disease and rheumatoid arthritis, and these contribute significantly to global morbidity and mortality. Understanding the role of the microbiota in autoimmune diseases may offer novel insight into factors that initiate and drive disease progression, stratify patient risk for complications and ultimately deliver new therapeutic strategies. This review summarises the current status on the role of the microbiota in autoimmune diseases.