gebhart/patrepeval huggingface dataset:
Burnt area detection at global scale using ATSR‐2: The GLOBSCAR products and their qualification (2004)

Quantifying the contribution of biomass burning to the global distribution of emissions of carbon into the atmosphere requires knowledge of the area burnt. The GLOBSCAR project was initiated in 2001 as part of the European Space Agency (ESA) Data User Programme, with the objective of producing global incremental monthly maps of burnt areas, using daytime data from year 2000 of the Along Track Scanning Radiometer (ATSR‐2) instrument onboard the ESA ERS‐2 satellite. The processing system combines the use of two algorithms representing different approaches to burnt area detection. The K1 algorithm is a contextual algorithm based on the geometrical characteristics of the burnt pixels in the near‐infrared (NIR, 0.87 microns)/thermal infrared (TIR, 11 microns) space, while the E1 algorithm consists of a series of fixed threshold tests applied to the data using information from four different spectral channels. The GLOBSCAR products are available from the GeoSuccess Web site ( http://www.geosuccess.net ) in ASCII and vector format. The products were validated using a variety of qualitative and quantitative tests against other field and remote sensing data. The GLOBSCAR results are presented per region and are compared to available statistics and other remote sensing products such as the ATSR‐2 World Fire Atlas (WFA) and the Global Burnt Area product derived from SPOT/VEGETATION (GBA‐2000). The potential and limitations of the GLOBSCAR products are then discussed. It is concluded that while the GLOBSCAR products represent a definite progress toward a better quantification of the areas burnt annually at the larger scales, coordinated improvements in remote sensing products are needed in order to better address the requirements of the user community. Future activities include the consolidation of the results through further qualification and the development of a multiyear multisensor product building upon the experience gained from both GLOBSCAR and GBA‐2000 projects.
Efficient low-contention parallel algorithms (1994)

The queue-read, queue-write (QRQW) PRAM model [GMR94] permits concurrent reading and writing, but at a cost proportional to the number of readers/writers to a memory location in a given step. The QRQW model reflects the contention properties of most parallel machines more accurately than either the well-studied CRCW or EREW models: the CRCW model does not adequately penalize algorithms with high contention to shared memory locations, while the EREW model is too strict in its insistence on zero contention at each step. Of primary practical and theoretical interest, then, is the design of fast and efficient QRQW algorithms for problems for which all previous algorithms either suffer from high contention, fail to be fast, or fail to be work-optimal.This paper describes low-contention, fast, work-optimal QRQW PRAM algorithms for the fundamental problems of finding a random permutation, parallel hashing, load balancing, and sorting. There is no known fast, work-optimal EREW algorithm known for finding a random permutation or for parallel hashing. For load balancing, we improve upon the EREW result whenever the ratio of the maximum to the average load is not too large. We show that the logarithmic dependence of the QRQW running time on this ratio is inherent by providing a matching lower bound.We demonstrate the performance advantage of a QRQW random permutation algorithm, compared with the popular EREW algorithm, by implementing and running both algorithms on the MasPar MP-1.Finally, we extend the work-time framework for the design of parallel algorithms to account for contention, and relate it to the QRQW PRAM model. We use our QRQW load balancing algorithm, as well as the QRQW linear compaction algorithm in [GMR94], to provide automatic tools for processor allocation—an issue that needs to be handled when translating an algorithm from its work-time presentation into the explicit PRAM description.
Visualizing dynamic architectural environments (2004)

How to expose the internal 3D structures of multiplayer games and architectural models by automatically generating interactive exploded views.
Motion Blur for EWA Surface Splatting (2010)

Abstract This paper presents a novel framework for elliptical weighted average (EWA) surface splatting with time‐varying scenes. We extend the theoretical basis of the original framework by replacing the 2D surface reconstruction filters by 3D kernels which unify the spatial and temporal component of moving objects. Based on the newly derived mathematical framework we introduce a rendering algorithm that supports the generation of high‐quality motion blur for point‐based objects using a piecewise linear approximation of the motion. The rendering algorithm applies ellipsoids as rendering primitives which are constructed by extending planar EWA surface splats into the temporal dimension along the instantaneous motion vector. Finally, we present an implementation of the proposed rendering algorithm with approximated occlusion handling using advanced features of modern GPUs and show its capability of producing motion‐blurred result images at interactive frame rates.
Improved laser-fiber coupling by using spot-size transformer (1996)

Improved coupling between a laser and a fiber is demonstrated using a synchronous directional coupler section with nonidentical waveguides to enlarge the spot-size for improved butt-coupling.
Chromate-Reducing Properties of Soluble Flavoproteins from <i>Pseudomonas putida</i> and <i>Escherichia coli</i> (2004)

Cr(VI) (chromate) is a toxic, soluble environmental contaminant. Bacteria can reduce chromate to the insoluble and less toxic Cr(III), and thus chromate bioremediation is of interest. Genetic and protein engineering of suitable enzymes can improve bacterial bioremediation. Many bacterial enzymes catalyze one-electron reduction of chromate, generating Cr(V), which redox cycles, generating excessive reactive oxygen species (ROS). Such enzymes are not appropriate for bioremediation, as they harm the bacteria and their primary end product is not Cr(III). In this work, the chromate reductase activities of two electrophoretically pure soluble bacterial flavoproteins--ChrR (from Pseudomonas putida) and YieF (from Escherichia coli)-were examined. Both are dimers and reduce chromate efficiently to Cr(III) (kcat/Km = approximately 2 x 10(4) M(-1) x s(-1)). The ChrR dimer generated a flavin semiquinone during chromate reduction and transferred >25% of the NADH electrons to ROS. However, the semiquinone was formed transiently and ROS diminished with time. Thus, ChrR probably generates Cr(V), but only transiently. Studies with mutants showed that ChrR protects against chromate toxicity; this is possibly because it preempts chromate reduction by the cellular one-electron reducers, thereby minimizing ROS generation. ChrR is thus a suitable enzyme for further studies. During chromate reduction by YieF, no flavin semiquinone was generated and only 25% of the NADH electrons were transferred to ROS. The YieF dimer may therefore be an obligatory four-electron chromate reducer which in one step transfers three electrons to chromate and one to molecular oxygen. As a mutant lacking this enzyme could not be obtained, the role of YieF in chromate protection could not be directly explored. The results nevertheless suggest that YieF may be an even more suitable candidate for further studies than ChrR.
Effects of the laryngeal jet on nano- and microparticle transport and deposition in an approximate model of the upper tracheobronchial airways (2008)

The extent to which laryngeal-induced flow features penetrate into the upper tracheobronchial (TB) airways and their related impact on particle transport and deposition are not well understood. The objective of this study was to evaluate the effects of including the laryngeal jet on the behavior and fate of inhaled aerosols in an approximate model of the upper TB region. The upper TB model was based on a simplified numerical reproduction of a replica cast geometry used in previous in vitro deposition experiments that extended to the sixth respiratory generation along some paths. Simulations with and without an approximate larynx were performed. Particle sizes ranging from 2.5 nm to 12 mum were considered using a well-tested Lagrangian tracking model. The model larynx was observed to significantly affect flow dynamics, including a laryngeal jet skewed toward the right wall of the trachea and a significant reverse flow in the left region of the trachea. Inclusion of the laryngeal model increased the tracheal deposition of nano- and micrometer particles by factors ranging from 2 to 10 and significantly reduced deposition in the first three bronchi of the model. Considering localized conditions, inclusion of the laryngeal approximation decreased deposition at the main carina and produced a maximum in local surface deposition density in the lobar-to-segmental bifurcations (G2-G3) for both 40-nm and 4-microm aerosols. These findings corroborate previous experiments and highlight the need to include a laryngeal representation in future computational and in vitro models of the TB region.
The <i>Silver</i> locus product Pmel17/gp100/Silv/ME20: controversial in name and in function (2005)

Mouse coat color mutants have led to the identification of more than 120 genes that encode proteins involved in all aspects of pigmentation, from the regulation of melanocyte development and differentiation to the transcriptional activation of pigment genes, from the enzymatic formation of pigment to the control of melanosome biogenesis and movement [Bennett and Lamoreux (2003) Pigment Cell Res. 16, 333]. One of the more perplexing of the identified mouse pigment genes is encoded at the Silver locus, first identified by Dunn and Thigpen [(1930) J. Heredity 21, 495] as responsible for a recessive coat color dilution that worsened with age on black backgrounds. The product of the Silver gene has since been discovered numerous times in different contexts, including the initial search for the tyrosinase gene, the characterization of major melanosome constituents in various species, and the identification of tumor-associated antigens from melanoma patients. Each discoverer provided a distinct name: Pmel17, gp100, gp95, gp85, ME20, RPE1, SILV and MMP115 among others. Although all its functions are unlikely to have yet been fully described, the protein clearly plays a central role in the biogenesis of the early stages of the pigment organelle, the melanosome, in birds, and mammals. As such, we will refer to the protein in this review simply as pre-melanosomal protein (Pmel). This review will summarize the structural and functional aspects of Pmel and its role in melanosome biogenesis.
Perfusion Quantification in Contrast-Enhanced Ultrasound (CEUS) – Ready for Research Projects and Routine Clinical Use (2012)

With contrast-enhanced ultrasound (CEUS) now established as a valuable imaging modality for many applications, a more specific demand has recently emerged for quantifying perfusion and using measured parameters as objective indicators for various disease states. However, CEUS perfusion quantification remains challenging and is not well integrated in daily clinical practice. The development of VueBox™ alleviates existing limitations and enables quantification in a standardized way. VueBox™ operates as an off-line software application, after dynamic contrast-enhanced ultrasound (DCE-US) is performed. It enables linearization of DICOM clips, assessment of perfusion using patented curve-fitting models, and generation of parametric images by synthesizing perfusion information at the pixel level using color coding. VueBox™ is compatible with most of the available ultrasound platforms (nonlinear contrast-enabled), has the ability to process both bolus and disruption-replenishment kinetics loops, allows analysis results and their context to be saved, and generates analysis reports automatically. Specific features have been added to VueBox™, such as fully automatic in-plane motion compensation and an easy-to-use clip editor. Processing time has been reduced as a result of parallel programming optimized for multi-core processors. A long list of perfusion parameters is available for each of the two administration modes to address all possible demands currently reported in the literature for diagnosis or treatment monitoring. In conclusion, VueBox™ is a valid and robust quantification tool to be used for standardizing perfusion quantification and to improve the reproducibility of results across centers.
Violence Risk Assessment (2010)

Howard, Jonathan J. MD; Cavanaugh, James L. Jr MDEditor(s): Janicak, Philip G. MD, Editor Author Information
Structural and electrical properties of Fe-doped thin films (1998)

The present study discusses the effect of iron doping in TiO2 thin films deposited by rf sputtering. Iron doping induces a structural transformation from anatase to rutile and electrical measurements indicate that iron acts as an acceptor impurity. Thermoelectric power measurement shows a transition between n-type and p-type electrical conduction for an iron concentration around 0.13 at.%. The highest p-type conductivity at room temperature achieved by iron doping was 10(-6) S m(-1).
A View from the Inside: HIV Support and Treatment in Prisons (2011)

Phillip Read and Jenny Douglas discuss some of the challenges experienced by HIV-positive prisoners and profile HIV services available to people in custody in NSW.
Mineral scale management. Part II. fundamental chemistry (2006)

The mineral scale that deposits in digesters and bleach plants is formed by a chemical precipitation process. As such, it is accurately modeled using the solubility product equilibrium constant. Although solubility product identifies the primary conditions tliat must he met for a scale problem to exist, the acid-base equilibria of the scaling anions often control where in the process scale will occur. These equilibria are the primary control method to minimize or prevent scale in a bleach plant. Both the acid-base equilibria and solubility product equilibria are influenced by temper ature and ionic strength. This paper reviews the chemistry of precipitation and acid-base equilibria. The Gibbs free energy expression is presented as a method to estimate equilibrium constants at temperatures in the bleach plant. The effect of ionic strength on ion activity and its influence on these processes are also discussed. Application: Preventing scale problems requires an understanding of the solubility product equilibrium, the acid-base equilibrium of the scaling anion, and the effects of temperature and ion activity on these equilibria.
Visualizing Big Data with augmented and virtual reality: challenges and research agenda (2015)

This paper provides a multi-disciplinary overview of the research issues and achievements in the field of Big Data and its visualization techniques and tools. The main aim is to summarize challenges in visualization methods for existing Big Data, as well as to offer novel solutions for issues related to the current state of Big Data Visualization. This paper provides a classification of existing data types, analytical methods, visualization techniques and tools, with a particular emphasis placed on surveying the evolution of visualization methodology over the past years. Based on the results, we reveal disadvantages of existing visualization methods. Despite the technological development of the modern world, human involvement (interaction), judgment and logical thinking are necessary while working with Big Data. Therefore, the role of human perceptional limitations involving large amounts of information is evaluated. Based on the results, a non-traditional approach is proposed: we discuss how the capabilities of Augmented Reality and Virtual Reality could be applied to the field of Big Data Visualization. We discuss the promising utility of Mixed Reality technology integration with applications in Big Data Visualization. Placing the most essential data in the central area of the human visual field in Mixed Reality would allow one to obtain the presented information in a short period of time without significant data losses due to human perceptual issues. Furthermore, we discuss the impacts of new technologies, such as Virtual Reality displays and Augmented Reality helmets on the Big Data visualization as well as to the classification of the main challenges of integrating the technology.
ChemInform Abstract: Magnetic Resonance Study of the Inclusion Compounds of Sodium in Zeolites: Beyond the Metal Particles Model. (1993)

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
Prediction of reversible disulfide based on features from local structural signatures (2017)

This study provides the first comparative analysis between the reversible and the structural disulfides. Distinct features remarkably different between these two groups of disulfides were identified, and a SVM-based classifier for predicting reversible disulfides was developed accordingly. A web server named RevssPred can be accessed freely from: http://biocomputer.bio.cuhk.edu.hk/RevssPred .
Characterization of the SPECT 5-HT2A receptor ligand 123I-R91150 in healthy volunteers: part 2--ketanserin displacement. (2006)

(123)I-R91150 SPECT is sensitive enough to measure ketanserin dose-dependent displacement in cerebral regions rich in 5-HT(2A) receptors. These results support the selectivity of (123)I-R91150 for 5-HT(2A) receptors and its use as a SPECT ligand for measurements of drug-induced 5-HT(2A) receptor occupancy in humans.
Use of Allograft Biopsies to Assess Thymopoiesis after Thymus Transplantation (2008)

Thymus allograft biopsies were performed in athymic infants with complete DiGeorge anomaly after thymus transplantation to assess whether the thymus allograft tissue was able to support thymopoiesis. Forty-four consecutive infants were treated with postnatal cultured thymus allografts. Thirty biopsies and six autopsies evaluating the allograft site were obtained in 33 infants, 23 of whom survive. The allograft was examined by immunohistochemistry for evidence of thymopoiesis. Grafted thymus tissue was found in 25 of 30 biopsies, 23 of which showed thymopoiesis. All 19 survivors with thymopoiesis on biopsy developed naive T cells and T cell function. Autopsies were done in six subjects, three of whom had biopsies. All autopsy samples contained thymus tissue including one for which the biopsy had not contained graft. Of the six autopsies, one had evidence of thymopoiesis. Epithelium without thymopoiesis was seen in two of 25 biopsies in which thymus tissue was detected and in five of six autopsies. Graft rejection was seen in one autopsy. Biopsies were important for showing the following: 1) the damaging effect of pulse steroids on thymopoiesis; 2) the need for adequate immunosuppression of atypical subjects; and 3) the presence of thymopoiesis in the presence of ongoing immunosuppression. In addition, the biopsy could rule out graft rejection in the atypical subjects who had oligoclonal T cells that could cause rejection. In summary, combining biopsy and autopsy data, allogeneic thymus tissues showed thymopoiesis in 24 of 29 (86%) evaluable transplants. The results of these biopsies led to improved care of these complex patients.
Accuracy of tumor motion compensation algorithm from a robotic respiratory tracking system: A simulation study (2007)

The Synchrony Respiratory Tracking System (RTS) is a treatment option of the CyberKnife robotic treatment device to irradiate extra-cranial tumors that move due to respiration. Advantages of RTS are that patients can breath normally and that there is no loss of linac duty cycle such as with gated therapy. Tracking is based on a measured correspondence model (linear or polynomial) between internal tumor motion and external (chest/abdominal) marker motion. The radiation beam follows the tumor movement via the continuously measured external marker motion. To establish the correspondence model at the start of treatment, the 3D internal tumor position is determined at 15 discrete time points by automatic detection of implanted gold fiducials in two orthogonal x-ray images; simultaneously, the positions of the external markers are measured. During the treatment, the relationship between internal and external marker positions is continuously accounted for and is regularly checked and updated. Here we use computer simulations based on continuously and simultaneously recorded internal and external marker positions to investigate the effectiveness of tumor tracking by the RTS. The Cyberknife does not allow continuous acquisition of x-ray images to follow the moving internal markers (typical imaging frequency is once per minute). Therefore, for the simulations, we have used data for eight lung cancer patients treated with respiratory gating. All of these patients had simultaneous and continuous recordings of both internal tumor motion and external abdominal motion. The available continuous relationship between internal and external markers for these patients allowed investigation of the consequences of the lower acquisition frequency of the RTS. With the use of the RTS, simulated treatment errors due to breathing motion were reduced largely and consistently over treatment time for all studied patients. A considerable part of the maximum reduction in treatment error could already be reached with a simple linear model. In case of hysteresis, a polynomial model added some extra reduction. More frequent updating of the correspondence model resulted in slightly smaller errors only for the few recordings with a time trend that was fast, relative to the current x-ray update frequency. In general, the simulations suggest that the applied combined use of internal and external markers allow the robot to accurately follow tumor motion even in the case of irregularities in breathing patterns.
A simple method for improving the specificity of anti-methyl histone antibodies (2010)

Antibodies differentiating between the mono-, di- and trimethylated forms of specific histone lysine residues are a critical tool in epigenome research, but show variable specificity, potentially limiting comparisons across studies and between samples. Using trimethyl histone H3 lysine 4 (H3K4me3)-a mark enriched at transcription start sites (TSS) of active genes-as an example, we describe how simple co-incubation with synthetic peptide of the K4me2 modification leads to increased specificity for K4me3 and a much sharper peak distribution proximal to TSS following chromatin immunoprecipitation and massively parallel sequencing (ChIP-Seq).
A Reliable Spaceborne Memory with a Single Error and Erasure Correction Scheme (1979)

A program for the development of a highly reliable memory has been underway for a number ofyears at ESTEC. Plated wire and ferrite core spaceborne memories have been developed and qualified, and the more recent advent of low power LSI memory devices has made the semiconductor memory an attractive proposition for spaceborne applications. These technologies are briefly discussed and compared. However, in common with the previous solutions, the reliability of a semiconductor memory even when protected by a conventional single error correction scheme, did not meet the requirements of long duration space missions.