gebhart/patrepeval huggingface dataset:
The Inhibition Site on Myelin-Associated Glycoprotein Is within Ig-Domain 5 and Is Distinct from the Sialic Acid Binding Site (2007)

Myelin-associated glycoprotein (MAG) is a potent inhibitor of axonal regeneration. It contains five Ig-like domains and is a sialic binding protein. Previously, we showed that the sialic acid binding site on MAG maps to arginine 118 in Ig domain 1 (Kelm et al., 1994). However, sialic acid binding was neither necessary nor sufficient for MAG to bring about inhibition of neurite outgrowth. Consistent with this, we now map a distinct inhibition site on MAG to Ig domain 5 (Ig-5). We show that when a truncated form of MAG missing Ig domains 1 and 2 is expressed by Chinese hamster ovary (CHO) cells, it does not bind sialic acid, but still inhibits neurite outgrowth almost as effectively as full-length MAG. To determine whether the inhibition site mapped to Ig-3, Ig-4, or Ig-5, we made chimeric molecules of various combinations of these three MAG Ig domains fused to Ig domains from another Ig family member, sialoadhesin (Sn), which also binds to sialic acid in the same linkage as MAG. The MAG-Sn molecules were expressed in CHO cells and all contained five Ig domains and were able to bind sialic acid. However, only the chimeric molecules containing MAG Ig-5 inhibited neurite outgrowth. Furthermore, peptides corresponding to sequences in MAG Ig-5, but not Ig-4 or Sn Ig-5, are able to block inhibition of neurite outgrowth by both wild-type MAG and CNS myelin. We conclude that the inhibition site on MAG is carried by Ig domain 5 and that this site is distinct from the sialic-acid binding site.
The Genornic and Sequence Analysis of Rat Histone H2B Genes (1998)

In addition to previously characterized testis-specific and somatic H2B histone genes, two somatic histone H2B genes, hereafter called sH2B-2 and sH2B-3, were isolated from a rat genomic library, genomic organization was determined, and their promoter was sequenced. Like many other H2B genes, sH2B-2 gene was closely linked to H2A gene whereas H3 gene was located upstream of sH2B-3 gene. Deletion and mutation analysis of 5' sequence fused to CAT reporter gene revealed that the interaction between CCAAT and octamer binding factors is important for S-phase-specific activation of sH2B-3 gene.
Exogenous Cytokinins Increase Grain Yield of Winter Wheat Cultivars by Improving Stay-Green Characteristics under Heat Stress (2016)

Stay-green, a key trait of wheat, can not only increase the yield of wheat but also its resistance to heat stress during active photosynthesis. Cytokinins are the most potent general coordinator between the stay-green trait and senescence. The objectives of the present study were to identify and assess the effects of cytokinins on the photosynthetic organ and heat resistance in wheat. Two winter wheat cultivars, Wennong 6 (a stay-green cultivar) and Jimai 20 (a control cultivar), were subjected to heat stress treatment from 1 to 5 days after anthesis (DAA). The two cultivars were sprayed daily with 10 mg L-1 of 6-benzylaminopurine (6-BA) between 1 and 3 DAA under ambient and elevated temperature conditions. We found that the heat stress significantly decreased the number of kernels per spike and the grain yield (P < 0.05). Heat stress also decreased the zeatin riboside (ZR) content, but increased the gibberellin (GA3), indole-3-acetic acid (IAA), and abscisic acid (ABA) contents at 3 to 15 DAA. Application of 6-BA significantly (P < 0.05) increased the grain-filling rate, endosperm cell division rate, endosperm cell number, and 1,000-grain weight under heated condition. 6-BA application increased ZR and IAA contents at 3 to 28 DAA, but decreased GA3 and ABA contents. The contents of ZR, ABA, and IAA in kernels were positively and significantly correlated with the grain-filling rate (P < 0.05), whereas GA3 was counter-productive at 3 to 15 DAA. These results suggest that the decrease in grain yield under heat stress was due to a lower ZR content and a higher GA3 content compared to that at elevated temperature during the early development of the kernels, which resulted in less kernel number and lower grain-filling rate. The results also provide essential information for further utilization of the cytokinin substances in the cultivation of heat-resistant wheat.
The post: pre-dialysis plasma urea nitrogen ratio to estimate K·t/V and NPCR: mathematical modeling (1989)

The mathematical basis of the relationship between K.t/V and the ratio of the postdialysis (Ct) to predialysis (Co) plasma urea nitrogen levels (Ct/Co = R) is the urea kinetic model. The R vs. K.t/V relationship is modulated by the patient's normalized protein catabolic rate (NPCR), the dialysis session length, and the predialysis plasma urea nitrogen level, due to urea generated during the dialysis session; the latter increases Ct and hence raises R. The relationship between R and K.t/V is also affected by the amount of ultrafiltrate removed during the dialysis session, because convective urea removal, which is a part of K, does not result in a lowering of the (Ct). In stable adult maintenance dialysis patients receiving 3 treatments/week, with an NPCR of less than or equal to 1.1 g/kg/day and zero residual renal function, the target K.t/V is 1.05 and the target R will be about 0.41. In patients who require different K.t/V values, corresponding values of R can be computed. Based on an empiric examination of the urea kinetic equations, several formulas are proposed for estimating K.t/V from R and vice versa, which depend only on the dialysis session length t, the amount of ultrafiltrate UF, and the postdialysis weight W or V; e.g., K.t/V = - ln (R - 0.008.t-UF/W). After K.t/V has been estimated from R, t, UF and W, one can then estimate the NPCR in the residual renal urea clearance (Kru) has also been measured. From the estimated K.t/V, the Kru, and an estimated V, the total urea clearance over time corrected for V ("KT") is computed.(ABSTRACT TRUNCATED AT 250 WORDS)
Analysis and evaluation of a bioengineered submerged breakwater (2004)

Louisiana's coastline has received national attention due to rapid erosion rates estimated from approximately 60 to 100 square kilometers per year. The disappearance of coastal areas jeopardizes public and private infrastructure, property values, aquatic ecosystems, and standards of living. In order to resolve the erosion problem, innovative solutions have been explored that may improve effectiveness and cost efficiency. This research involves a technology, termed an "oysterbreak," which is a bioengineered submerged breakwater. This structure promotes oysters to form a dense structure that dissipates wave energy. Since the structure is biologically dominated, initial material use is modest. The oysterbreak was evaluated through a series of experiments. Settlement patterns were analyzed by quantifying the biological fouling on the structure during its deployment in Grand Isle, Louisiana for one year. Secondly, settlement preference on materials was analyzed in a tank under various flows. To investigate further, the wave interactions with various scaled designs were also analyzed in a wave tank. The transmission, reflection, and dissipation characteristics were determined as growth occurred. Lastly, a predictive model was developed from the results. Experiments suggest that a uniform distribution pattern could be expected in the absence of predation. Also, it was shown that mortar coating was superior for oyster settlement to PVC pipe and commercially available oyster tubes. The wave tank experiments concluded that wave transmission through the structure decreased as growth occurred. It was also shown that a structure with 2 vertical slats/meter, could be used to effectively dissipate waves. The predictive model developed suggests that the oysterbreak can be used in field conditions. The model showed that after one year of growth, an oysterbreak 20 meters wide has the capacity to reduce wave energy by 70%. This prediction is consistent with other submerged breakwater designs. The results of these experiments will be used to design, deploy and monitor full scale oysterbreaks.
Kosten und Nutzen II: Gesundheitswesen (1979)

Als zweiten Problemindikator des Industriesystems behandeln wir nun die „Zivilisationskrankheiten“, die nach Angaben von Bundesministerin Antje Huber 1976 bereits einen Anteil von 85 Prozent an den Todesursachen der Bundesrepublik hatten. Im Gegensatz zu den traditionellen Infektionskrankheiten sind sie eine Herausforderung, der sich das moderne Gesundheitssystem zwar mit großem Aufwand widmet, vor der es aber in bemerkenswerter Weise versagt. Es gibt heute kein soziales Gemeininteresse, an dem (in den kapitalistischen Ländern) soviel verdient wird, wie das der Bekämpfung der Krankheitsfolgen des Industriesystems.
Outcomes of the Kaiser Permanente Tele-Home Health Research Project (2000)

Remote video technology in the home health care setting was shown to be effective, well received by patients, capable of maintaining quality of care, and to have the potential for cost savings. Patients seemed pleased with the equipment and the ability to access a home health care provider 24 hours a day. Remote technology has the potential to effect cost savings when used to substitute some in-person visits and can also improve access to home health care staff for patients and caregivers. This technology can thus be an asset for patients and providers.
Characterization of Human Pancreatic Progenitor Cells (2010)

β-Cell replacement therapy via islet transplantation is an effective treatment for diabetes mellitus, but its widespread use is severely limited by the shortage of donor organs. Because pancreatic stem/progenitor cells are abundantly available in the pancreas of these patients and in donor organs, the cells could become a useful target for β-cell replacement therapy. We previously established a mouse pancreatic stem cell line without genetic manipulation. In this study, we used the techniques to identify and isolate human pancreatic stem/progenitor cells. The cells from a duct-rich population were cultured in 23 kinds of culture media, based on media for mouse pancreatic stem cells or for human embryonic stem cells. The cells in serum-free media formed "cobblestone" morphologies, similar to a mouse pancreatic stem cell line. On the other hand, the cells in serum-containing medium and the medium for human embryonic stem cells formed "fibroblast-like" morphologies. The cells divided actively until day 30, and the population doubling level (PDL) was 6-10. However, the cells stopped dividing after 30 days in any culture conditions. During the cultures, the nucleus/cytoplasm (N/C) ratio decreased, suggesting that the cells entered senescence. Exendin-4 treatment and transduction of PDX-1 and NeuroD proteins by protein transduction technology into the cells induced insulin and pancreas-related gene expression. Although the duplications of these cells were limited, this approach could provide a potential new source of insulin-producing cells for transplantation.
G‐quadruplex‐binding small molecules ameliorate <i>C9orf72</i> <scp>FTD</scp> / <scp>ALS</scp> pathology <i>in vitro</i> and <i>in vivo</i> (2017)

Intronic GGGGCC repeat expansions in <i>C9orf72</i> are the most common known cause of frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS), which are characterised by degeneration of cortical and motor neurons, respectively. Repeat expansions have been proposed to cause disease by both the repeat RNA forming foci that sequester RNA-binding proteins and through toxic dipeptide repeat proteins generated by repeat-associated non-ATG translation. GGGGCC repeat RNA folds into a G-quadruplex secondary structure, and we investigated whether targeting this structure is a potential therapeutic strategy. We performed a screen that identified three structurally related small molecules that specifically stabilise GGGGCC repeat G-quadruplex RNA We investigated their effect in <i>C9orf72</i> patient iPSC-derived motor and cortical neurons and show that they significantly reduce RNA foci burden and the levels of dipeptide repeat proteins. Furthermore, they also reduce dipeptide repeat proteins and improve survival <i>in vivo</i>, in GGGGCC repeat-expressing <i>Drosophila</i> Therefore, small molecules that target GGGGCC repeat G-quadruplexes can ameliorate the two key pathologies associated with <i>C9orf72</i> FTD/ALS These data provide proof of principle that targeting GGGGCC repeat G-quadruplexes has therapeutic potential.
<b>Oxidative Stress And Potassium Channel Function</b> (2002)

1. Modulation of K+ channel activities by cellular oxidative stress has emerged as a significant determinant of vasomotor function in multiple disease states. 2. Evidence from in vitro and in vivo studies suggest that superoxide (O2-) and hydrogen peroxide (H2O2) enhance BKCa channel activity in rat and cat cerebral arterioles; however, activity is decreased by peroxynitrite (ONOO-) in rat cerebral arteries. The mechanisms of changes in BKCa channel properties are not fully understood and may involve oxidation of cysteine residues that are located in the cell membranes. 3. Studies further suggest that O2- increases KATP channel activity in guinea-pig cardiac myocytes, but decreases opening in cerebral vasculature. Both H2O2 and ONOO- enhance KATP channel activity in the myocardium and in coronary, renal, mesenteric and cerebral vascular beds. Alteration of KATP channels by free radicals may be due to oxidation of SH groups or changes in the cytosolic concentration of ATP. 4. It does appear that O2- produced by either reaction of xanthine and xanthine oxidase or elevated levels of glucose reduces Kv channel activity and the impairments can be partially restored by free radical scavengers, superoxide dismutase and catalase. 5. Thus, redox modulation of potassium channel activity is an important mechanism regulating cell vascular smooth muscle membrane potential.
High prevalence of 2‐mono‐ and 2,6‐di‐substituted Manol‐terminating sequences among O‐glycans released from brain glycopeptides by reductive alkaline hydrolysis (1999)

Di- to heptasaccharides isolated from total nondialyzable brain glycopeptides after release by alkaline borohydride treatment have been subjected to mass spectrometric and nuclear magnetic resonance spectroscopic analyses supplemented by TLC-MS analyses of derived neoglycolipids. A family of Manol-terminating oligosaccharides has been revealed which includes novel sequences with a 2, 6-disubstituted Manol: In contrast to the Manol-terminating HNK-1 antigen-positive chains described previously that occur as a minor population [Yuen, C.-T., Chai, W., Loveless, R.W., Lawson, A.M., Margolis, R.U. & Feizi, T. (1997) J. Biol. Chem. 272, 8924-8931], the above oligosaccharides are abundant. The ratio of these compounds to the classical N-acetylgalactosaminitol-terminating oligosaccharides is about 1 : 3. Thus, there appears to be in higher eukaryotes a major alternative pathway related to the yeast-type protein O-mannosylation, the enzymatic basis and functional importance of which now require investigation.
Will Decision-Support Systems Be Widely Used for the Management of Plant Diseases? (2013)

Decision-support systems (DSSs) are interactive computer-based systems that help decision makers solve unstructured problems under complex, uncertain conditions. Experimental use of DSSs has resulted in improved disease suppression and lowered risks of crop damage. In many cases, it has also led to the use of smaller quantities of active substances, as compared with standard spraying practices. Hundreds of DSSs have been developed over the years and are readily available and affordable. However, most farm managers do not use them as part of their integrated pest management (IPM) practices. Since the mid-1980s, the author of this paper, together with numerous colleagues, has developed DSSs and decision rules for the management of diseases in a variety of crops, including extensive crops, such as wheat, sunflower, and pea; semi-intensive crops, such as pear, chickpea, cotton, and tarragon; and intensive crops, such as tomato, potato, cucumber, sweet pepper, carrot, and grapevine. Some of these systems were used widely, but others were not. This experience may allow us to draw general conclusions regarding the use of DSSs and decision rules. Possible explanations for the widely varying acceptance rates are presented, and the effects of anticipated changes in the agribusiness sector on the future use of DSSs are discussed.
Optimal phase filtering for high-power laser array far-field distribution (1993)

We present numerical simulations of the propagation of the field emitted by laser arrays consisting of a small number of elements. Our computations show how propagation transforms part of an amplitude modulation into a phase modulation. This fact can be used to enhance the central lobe energy in the far field of high-power laser arrays by means of a simple corrective optical element. We discuss optimal filtering conditions and prove that the quarter-Talbot distance generally used in previous studies is not the best choice.
Isocitrate dehydrogenase 1 mutations prime the all-trans retinoic acid myeloid differentiation pathway in acute myeloid leukemia (2016)

Acute myeloid leukemia (AML) is characterized by the accumulation of malignant blasts with impaired differentiation programs caused by recurrent mutations, such as the isocitrate dehydrogenase (IDH) mutations found in 15% of AML patients. These mutations result in the production of the oncometabolite (R)-2-hydroxyglutarate (2-HG), leading to a hypermethylation phenotype that dysregulates hematopoietic differentiation. In this study, we identified mutant R132H IDH1-specific gene signatures regulated by key transcription factors, particularly CEBPα, involved in myeloid differentiation and retinoid responsiveness. We show that treatment with all-trans retinoic acid (ATRA) at clinically achievable doses markedly enhanced terminal granulocytic differentiation in AML cell lines, primary patient samples, and a xenograft mouse model carrying mutant IDH1. Moreover, treatment with a cell-permeable form of 2-HG sensitized wild-type IDH1 AML cells to ATRA-induced myeloid differentiation, whereas inhibition of 2-HG production significantly reduced ATRA effects in mutant IDH1 cells. ATRA treatment specifically decreased cell viability and induced apoptosis of mutant IDH1 blasts in vitro. ATRA also reduced tumor burden of mutant IDH1 AML cells xenografted in NOD-Scid-IL2rγ(null)mice and markedly increased overall survival, revealing a potent antileukemic effect of ATRA in the presence of IDH1 mutation. This therapeutic strategy holds promise for this AML patient subgroup in future clinical studies.
Comparative conformational and dynamical study of some N-quaternarized UV filters: structure–activity relationships (1996)

A comparative conformational and dynamical study of a series of structurally related molecules with UV-filtering properties, i.e. N,N-dimethyl-N-[2-(4-benzoyl-2-hydroxyphenoxy)ethyl]-N-dodecyl ammonium bromide 2, N,N-dimethyl-N-[6-(4-benzoylphenoxy)hexyl]-N-dodecyl ammonium bromide 3 and N,N-dimethyl-N-[3-(salicyloylamino)propyl]-N-dodecyl ammonium bromide 5, has been performed in CDCl3 and [2H6] DMSO solutions. The main conformers of 2 and 3 (extensively folded conformations) and 5 (‘linear’ conformations) were determined by means of selective spin-lattice proton relaxation rates, carbon spin-lattice relaxation rates and 1D nuclear Overhauser effects. On the basis of these results a possible correlation between conformation and antibacterial activity is discussed.
Effect of the anti-oestrogen tamoxifen on the development of renal cortical necrosis induced by oestrone + vasopressin administration in rats. (1988)

Bilateral renal cortical necrosis was observed after vasopressin administration in rats pretreated with oestrone acetate. Histochemical (succinic dehydrogenase, trichrome, periodic acid Schiff) and electronmicroscopic methods were used to examine how the anti-oestrogen, Tamoxifen, influences the development of this renal cortical necrosis. The experiments revealed that in most rats vasopressin did not induce renal tubular necrosis if the anti-oestrogen was administered simultaneously, even during oestrogen pretreatment. The results suggest that oestrogen receptors in the kidney are involved in the induction of renal cortical necrosis by vasopressin.
Genetic analysis of the capsid region of astroviruses (2001)

Eight serotypes of human astroviruses (HAstV-1 to HAstV-8) have been described. To date, the entire genomes of HAstV-1 and HAstV-2 as well as the ORF2 sequences of HAstV-1-6 and 8 have been reported. In this study, the ORF2 sequences of seventeen strains of HAstVs originating from different countries were determined, as well as the sequence ORF2 of one porcine astrovirus (PAstV) strain. Afterwards, comparison of the capsid protein precursors encoded by ORF2 of 46 strains of HAstVs, PAstV, and feline astrovirus (FAstV) was carried out. A phylogenetic tree showed eight genogroups of HAstVs that corresponded exactly to the serotypes. HAstV-3 and 7 were the most closely related, whereas HAstVs, FAstV, and PAstV segregated from each other. Compared to a PAstV, a FAstV is closer to HAstVs. Furthermore, the capsid protein precursors were divided into four regions (after amino acid residues 424, 688, and 776, respectively) based on sequence identity. Region I was the most conserved, and FAstV was very close in identity to HAstVs. Two amino acid motifs in region I were predicted to contain the common antigenic epitopes. Region II was relatively variable. Deletions and insertions were characteristic of region III, and region IV was relatively conserved. To our knowledge, this is the first comparative sequence analysis of the capsid protein precursors of eight serotypes of HAstVs as well as two animal astroviruses (FAstV and PAstV).
The no-cloning theorem (2009)

People gather, copy, and distribute information all the time. But in the quantum world, the laws of physics impose a severe restriction on copying: It is impossible to make a perfect copy of an unknown state.
Cellular activation by Ca2+ release from stores in the endoplasmic reticulum but not by increased free Ca2+ in the cytosol (1999)

Ca(2+) release from intracellular stores and/or transmembrane influx can increase the cytosolic free Ca(2+) concentration ([Ca(2+)](i)). Such changes in [Ca(2+)](i) might transduce signals regulating transcription, motility, secretion, and so on. Surfactant secretagogues such as ATP and ionomycin stimulate the release and transmembrane influx of Ca(2+), both of which increase [Ca(2+)](i). The addition of surfactant protein A (SP-A) or depleting cellular Ca(2+) inhibited both surfactant secretion and Ca(2+) transients. Current results suggest that Ca(2+) signalling stimulates surfactant secretion by type II pneumocytes, but not via increased [Ca(2+)](i). Treatment of cells with a Ca(2+) chelator, bis-(o-aminophenoxy)ethane-N,N,N',N'-tetra-acetic acid acetoxymethyl ester (BAPTA-AM), stimulated secretion but decreased [Ca(2+)](i). Adding SP-A or depleting Ca(2+) inhibited BAPTA-AM-induced secretion. When studied directly, Ca(2+) in the endoplasmic reticulum store ([Ca(2+)](l)) decreased in response to BAPTA, ionomycin and thapsigargin, and increased in response to SP-A. Phorbol ester (PMA) induced surfactant secretion without altering [Ca(2+)](i) or [Ca(2+)](l) and was unaffected by Ca(2+) depletion. The addition of PMA to Ca(2+)-releasing secretagogues increased secretion, but combining two Ca(2+)-releasing secretagogues did not. These results suggest that (1) Ca(2+) signalling of type II cell surfactant secretion reflects changes in [Ca(2+)](l), not [Ca(2+)](i), (2) PMA elicits secretion differently from Ca(2+)-releasing secretagogues, and (3) SP-A inhibits secretion by enhancing Ca(2+) sequestration within endoplasmic reticulum stores. Whether other cell types signal via changes in [Ca(2+)](l) is unknown.
Stochastic control theory (2015)

A branch of control theory which aims at predicting and minimizing the magnitudes and limits of the …