gebhart/patrepeval huggingface dataset:
Transcriptional map for Newcastle disease virus (1980)

A transcriptional map of Newcastle disease virus was determined by measuring the kinetics of UV inactivation of the transcription of individual genes and of viral infectivity. The inactivation of single genes was monitored by measuring the reduction in the accumulation of viral gene products in vivo and in vitro. In vivo, the accumulation of viral polypeptides in infected cells was measured after reversal of a cycloheximide treatment designed to inhibit secondary transcription. Actinomycin D and a hypertonic medium were used to decrease selectively the synthesis of host cell polypeptides in infected cells. In vitro, mRNA's synthesized by irradiated viruses were analyzed by translation in cell-free systems under conditions in which the amount of each polypeptide synthesized reflected the relative abundance of the corresponding mRNA. UV target sizes were obtained for the genes coding for the HN, F0, NP, M, L, and P polypeptides; the 47,000-dalton protein was not detected. A comparison of the UV target sizes with the corresponding gene sizes suggested that transcription of these genes initiated at a single promotor and proceeded in the order NP, P, (F0, M), HN, L. These experiments were performed with Newcastle disease virus strains Australia-Victoria and B1-Hitchner; for both strains, two forms of the P polypeptide which differed in electrophoretic mobility were detected. Proof that the P protein is virus specific was obtained. In addition, infection of chicken embryo cells with avirulent strain B1-Hitchner enhanced the accumulation of at least four polypeptides that appeared to be specified by the host cell rather than by the infecting virus.
CARM1 methylates MED12 to regulate its RNA-binding ability (2018)

The coactivator-associated arginine methyltransferase (CARM1) functions as a regulator of transcription by methylating a diverse array of substrates. To broaden our understanding of CARM1's mechanistic actions, we sought to identify additional substrates for this enzyme. To do this, we generated CARM1 substrate motif antibodies, and used immunoprecipitation coupled with mass spectrometry to identify cellular targets of CARM1, including mediator complex subunit 12 (MED12) and the lysine methyltransferase KMT2D. Both of these proteins are implicated in enhancer function. We identified the major CARM1-mediated MED12 methylation site as arginine 1899 (R<sup>1899</sup>), which interacts with the Tudor domain-containing effector molecule, TDRD3. Chromatin immunoprecipitation-seq studies revealed that CARM1 and the methyl mark it deposits are tightly associated with ERα-specific enhancers and positively modulate transcription of estrogen-regulated genes. In addition, we showed that the methylation of MED12, at the R<sup>1899</sup> site, and the recruitment of TDRD3 by this methylated motif are critical for the ability of MED12 to interact with activating noncoding RNAs.
Optimal Alternating Direction Implicit Parameters for Nonsymmetric Systems of Linear Equations (1991)

The determination of optimal parameters for the well-known alternating direction implicit (ADI) method leads to a minimization problem for rational functions of given degree l on compact sets E and F that contain the eigenvalues of the matrices involved. If E and F are real intervals, the solution of this problem was given by Zolotarev more than 100 years ago and by Wachspress in the 1960s. However, in the complex case, e.g., if the linear system arises from the discretization of non—self adjoint elliptic differential equations, little is known about this problem. In this paper, two approaches to the Zolotarev problem in the complex plane are considered. First generalized Leja points are considered as an example for rational functions which are asymptotically minimal. In addition, for rectangular eigenvalue domains E and F, the exact minimal solutions for $l = 2$ are constructed and it is shown, by numerical examples, that the results obtained using the optimal parameters of degree 2 are comparable to those obtained with a much higher number of Leja points. Finally, the different strategies are compared for the model problem of a discretized convection diffusion equation.
Commercial Building Loads Providing Ancillary Services in PJM (2014)

The adoption of low carbon energy technologies such as variable renewable energy and electric vehicles, coupled with the efficacy of energy efficiency to reduce traditional base load has increased the uncertainty inherent in the net load shape. Handling this variability with slower, traditional resources leads to inefficient system dispatch, and in some cases may compromise reliability. Grid operators are looking to future energy technologies, such as automated demand response (DR), to provide capacity-based reliability services as the need for these services increase. While DR resources are expected to have the flexibility characteristics operators are looking for, demonstrations are necessary to build confidence in their capabilities. Additionally, building owners are uncertain of the monetary value and operational burden of providing these services. To address this, the present study demonstrates the ability of demand response resources providing two\n ancillaryservices in the PJM territory, synchronous reserve and regulation, using an OpenADR 2.0b signaling architecture. The loads under control include HVAC and lighting at a big box retail store and variable frequency fan loads. The study examines performance characteristics of the resource: the speed of response, communications latencies in the architecture, and accuracy of response. It also examines the frequency and duration of events and the value in the marketplace which can be used to examine if the opportunity is sufficient to entice building owners to participate.
Molecular control of luminescence from poly(3-hexylthiophenes) (1993)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTMolecular control of luminescence from poly(3-hexylthiophenes)Bai Xu and Steven HoldcroftCite this: Macromolecules 1993, 26, 17, 4457–4460Publication Date (Print):August 1, 1993Publication History Published online1 May 2002Published inissue 1 August 1993https://pubs.acs.org/doi/10.1021/ma00069a009https://doi.org/10.1021/ma00069a009research-articleACS PublicationsRequest reuse permissionsArticle Views1627Altmetric-Citations232LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Surface-electrode point Paul trap (2010)

We present a model as well as experimental results for a surface electrode radiofrequency Paul trap that has a circular electrode geometry well suited for trapping single ions and two-dimensional planar ion crystals. The trap design is compatible with microfabrication and offers a simple method by which the height of the trapped ions above the surface may be changed in situ. We demonstrate trapping of single $^{88}\mathrm{Sr}$${}^{+}$ ions over an ion height range of $200\ensuremath{-}1000$ $\ensuremath{\mu}$m for several hours under Doppler laser cooling and use these to characterize the trap, finding good agreement with our model.
Functional Expression of L-, N-, P/Q-, and R-Type Calcium Channels in the Human NT2-N Cell Line (2000)

The biophysical and pharmacological properties of voltage-gated calcium channel currents in the human teratocarcinoma cell line NT2-N were studied using the whole cell patch-clamp technique. When held at -80 mV, barium currents (I(Ba)s) were evoked by voltage commands to above -35 mV that peaked at +5 mV. When holding potentials were reduced to -20 mV or 5 mM barium was substituted for 5 mM calcium, there was a reduction in peak currents and a right shift in the current-voltage curve. A steady-state inactivation curve for I(Ba) was fit with a Boltzmann curve (V(1/2) = -43.3 mV; slope = -17.7 mV). Maximal current amplitude increased from 1-wk (232 pA) to 9-wk (1025 pA) postdifferentiation. Whole cell I(Ba)s were partially blocked by specific channel blockers to a similar extent in 1- to 3-wk and 7- to 9-wk postdifferentiation NT2-N cells: 10 microM nifedipine (19 vs. 25%), 10 microM conotoxin GVIA (27 vs. 25%), 10 microM conotoxin MVIIC (15 vs. 16%), and 1.75 microM SNX-482 (31 vs. 33%). Currents were completely blocked by 300 microM cadmium. In the presence of nifedipine, GVIA, and MVIIC, approximately 35% of current remained, which was reduced further by SNX-482 (7-14% of current remained), consistent with functional expression of L-, N-, and P/Q-calcium channel types and one or more R-type channel. The presence of multiple calcium currents in this human neuronal-type cell line provides a potentially useful model for study of the regulation, expression and cellular function of human derived calcium channel currents; in particular the R-type current(s).
Tissue inhibitor of metalloproteinase 1 is a negative regulator of the metastatic ability of a human gastric cancer cell line, KKLS, in the chick embryo. (1993)

Tissue inhibitors of metalloproteinases (TIMPs) are the negative regulators of matrix metalloproteinases that degrade extracellular matrix. We examined the regulatory role of TIMP-1 in the metastatic activity of human gastric cancer cell lines in chick embryos because unregulated matrix metalloproteinase activities are believed to be essential during metastatic processes. One of the nine cell lines examined, KKLS cells, formed metastatic colonies in the chick livers. These cells expressed undetectable levels of TIMP-1, and this was not inducible by 12-O-tetradecanoylphorbol 13-acetate. Derivatives of KKLS cells with different levels of TIMP-1 expression were prepared by transfection of the human TIMP-1 complementary DNA controlled by a simian virus 40 early promoter. Metastatic abilities were suppressed by almost 70% in the transfectants expressing high levels of TIMP-1. In contrast, no suppression was observed in the control transfectants or in cells expressing the transfected TIMP-1 gene at low levels. These data indicate that a reduced expression of TIMP-1 in KKLS cells is responsible for their consequent metastatic potential. Moreover, it suggests that matrix metalloproteinase enzymatic activities are a prerequisite for metastatic activity in this experimental model system.
Probing cell chemistry with time‐of‐flight secondary ion mass spectrometry: development and exploitation of instrumentation for studies of frozen‐hydrated biological material (2003)

Imaging static secondary ion mass spectrometry (SIMS) offers a powerful method of obtaining molecular information from biological systems with good spatial resolution. However, the technique needs further development to make it suitable for routine analysis of cells. We report here the development of a new freeze-facture device to facilitate the manipulation and analysis of biological cell material, with the cell chemistry preserved intact by rapid freezing. We illustrate performance characteristics with high-contrast images of freeze-fractured, frozen-hydrated liposomes with the drug clofazamine constrained within the lipid bilayer providing a marker to determine the fracture plane across the liposome structure. By monitoring and imaging clofazamine on the surface of yeast cells in the frozen-hydrated state, and demonstrating its absence within molecular information from a cell fractured to reveal the cell ultrastructure, we demonstrate that the molecule does not penetrate the cell wall.
Localization of eosinophil granule major basic protein in human basophils. (1983)

In experiments using an immunofluorescent method to localize human eosinophil granule major basic protein (MBP) in cells and tissues, a small number of cells stained for MBP that subsequently could not be identified as eosinophils. Because the Charcot-Leyden crystal protein, another eosinophil protein, was recently identified in basophils, we tested whether MBP might also be a constituent of blood basophils. Highly purified, eosinophil-free basophil suspensions were prepared using the fluorescence-activated cell sorter (FACS) to sort basophil-containing mononuclear cell preparations stained with fluorescein-conjugated sheep IgG anti-human IgE antibody. Using these FACS-purified basophils, we found that: (a) enrichment for surface IgE-positive cells (greater than 95% basophils) by FACS also enriched for cells staining for MBP by immunofluorescence; (b) MBP appeared to be localized in the histamine-, heparin-containing granules; (c) significant quantities of MBP were measurable by radioimmunoassay (RIA) in freeze-thaw detergent extracts of purified basophils; and (d) RIA dose-response curves for extracts of purified eosinophils and basophils had identical slopes. The MBP content of basophils from normal individuals averaged 140 ng/10(6) cells, whereas purified eosinophils from normal donors and patients with the hyper-eosinophilic syndrome averaged 4,979 and 824 ng/10(6) cells, respectively. MBP was also detected by immunofluorescence and RIA in cells obtained from a patient with basophil leukemia, although the MBP content for basophil leukemia cells was lower than that for normal basophils. We conclude that basophils contain a protein that is immunochemically indistinguishable from eosinophil granule MBP.
How to keep shunts functioning, or "the impossible dream". (1985)

Hydrocephalus is a benign condition, and as our expertise in surgical treatment has increased, many of the "inevitable complications" are disappearing, and a normal life associated with satisfactory shunt function is no longer "the impossible dream." While this chapter has identified a few of the problems that may complicate long-term management, it is important to reemphasize that the most important single factor which determines success or failure is the attitude and experience of the neurosurgeon. While there is a great deal of surgical pride associated with removing a meningioma or clipping an aneurysm, we do not receive accolades from our colleagues when we have inserted or replaced a shunt. Whereas the surgical technique that is employed to remove an acoustic tumor or a meningioma at the base of the brain is a testimony to the skill of the neurosurgeon, it is not a technical feat to revise a shunt in an acutely ill child. When the surgical outcome is a satisfactory one, it is taken for granted, and when recurrent problems evolve they are assumed to reflect problems intrinsic to caring for hydrocephalus, and little consideration is given to the technical and conceptual skills required to retrieve the situation. Neurosurgeons often lose sight of the fact that hydrocephalus is the most benign intracranial disorder which is treated in large numbers. I believe that the most serious problem in the treatment of hydrocephalus has been the reluctance of experienced neurosurgeons to devote their time and energies to understanding the underlying pathophysiology and the potential complications and to instituting appropriate treatment. A neurosurgeon who is devoted to both the patient and the family and is committed to understanding and treating complications associated with shunts and shunt dependency will be the best insurance of the future of the patient, and ultimately as normal adults these patients will be a permanent testimony to the skills of the primary neurosurgeon.
Technical Report: Multi-Carrier Position-Based Packet Forwarding Protocol For Wireless Sensor Networks (2011)

Beaconless position-based forwarding protocols have recently evolved as a promising solution for packet forwarding in wireless sensor networks. However, as the node density grows, the overhead incurred in the process of relay selection grows significantly. As such, end-to-end performance in terms of energy and latency is adversely impacted. With the motivation of developing a packet forwarding mechanism that is tolerant to node density, an alternative position-based protocol is proposed in this paper. In contrast to existing beaconless protocols, the proposed protocol is designed such that it eliminates the need for potential relays to undergo a relay selection process. Rather, any eligible relay may decide to forward the packet ahead, thus significantly reducing the underlying overhead. The operation of the proposed protocol is empowered by exploiting favorable features of orthogonal frequency division multiplexing (OFDM) at the physical layer. The end-to-end performance of the proposed protocol is evaluated against existing beaconless position-based protocols analytically and as well by means of simulations. The proposed protocol is demonstrated in this paper to be more efficient. In particular, it is shown that for the same amount of energy the proposed protocol transports one bit from source to destination much quicker.
Fault-tolerant computer system with three symmetric computers (1978)

Many computer systems have turned increasingly to control systems, requiring more sophisticated machinery over an ever-widening range. The reliability of the system should be carefully considered in all its aspects. The concept of a control segment is introduced against local malfunctions or failures in order to save the system from going down. This paper also describes the fault tolerant control computer system with dual operation aimed at getting the fail-safe feature of the control output and complex operation features for maintenance and improvement of the system. Three "off-the-shelf" computers are connected symmetrically by three special hardwares and configuration programs not only in hardware, but also software configuration. Degradation techniques in software and hardware are introduced to prevent the system from stoppage. The actual running record shows 99.99 percent operating availability for three years in the case of the command and control system for a railway which is described here.
Nrf3 Negatively Regulates Antioxidant-response Element-mediated Expression and Antioxidant Induction of NAD(P)H:Quinone Oxidoreductase1 Gene (2004)

Antioxidant-response element (ARE) and nuclear factor Nrf2-mediated expression and coordinated induction of genes encoding chemopreventive proteins, including NQO1, are critical mechanisms in chemoprotection. Recently, Nrf3, a new member of the Nrf family with substantial homology to Nrf2, was identified and cloned. In this report, we have investigated the role of Nrf3 in ARE-mediated gene expression and induction of NQO1 in response to antioxidants. Overexpression of Nrf3 in Hep-G2 cells led to a concentration-dependent decrease in transfected and endogenous NQO1 gene expression and induction in response to antioxidant tert-butylhydroquinone (t-BHQ). Deletion mutation analysis revealed that Nrf3 repression of NQO1 gene expression required heterodimerization and DNA binding domains but not transcriptional activation domain of Nrf3. Bandshift and supershift assays with in vitro transcribed and translated proteins and nuclear extracts from Hep-G2 cells treated with Me2SO and t-BHQ and immunoprecipitation assays demonstrated that Nrf3 associates with small Maf proteins to bind to the ARE. RNA interference specific to Nrf3 reduced intracellular Nrf3 leading to increased expression and induction of transfected and endogenous NQO1 gene expression in response to t-BHQ. These results combined suggest that Nrf3 is a negative regulator of ARE-mediated gene expression.
Origin of the High Capacity Manganese-Based Oxyfluoride Electrodes for Rechargeable Batteries (2018)

In the quest for high energy density rechargeable batteries, conversion-type cathode materials stand out with their appealing multielectron transfer properties. However, they undergo a series of complex phase transitions upon initial cycling as opposed to conventional intercalation-type materials. Within this category, iron-based mixed-anion solid solutions (FeOxF2–x) have captured the most attention of the battery community, owing to their high theoretical capacity and moderate cyclability. In the meantime, it was recently demonstrated, via a series of electrochemical cycling experiments, the in situ preparation of manganese-based mixed-anion cathode materials based on decomposition of electrolyte salt LiPF6 in the presence of MnO. To take a step forward, we herein report a routine protocol to prepare 220 mAh g–1-class composite cathodes. In addition, we provide a comprehensive understanding of the in situ fluorination and locally reversible phase transitions using complementary analytical techniques. The charged phase, with an average Mn oxidation state of ca. +2.8, consists of a highly disordered O-rich cubic-spinel-like core and an F-rich amorphous shell. Upon discharge, lithiation induces further phase transition, forming LiF, MnO, and a lithiated rocksalt-like phase. This work, which we also extended to the iron-based system, offers insights into modification of chemical and electronic properties of electrode materials by in situ fluorination.
[Fundamental investigations for the deposition of aerosols from radioactive solutions in the upper and lower airways (author's transl)]. (1979)

By means of 99mtechnetium diphosphonate and a scintillation camera we measured the deposition of aerosols. During normal breathing rhythm and without leading the aerosol by valves the retention in the lower airways was on an average of 5.6%, that is 0.07 ml/min. By installation of suitable valves for in- and expiration and mouth tubes, deep and complete expiration with breath holding the retention of the aerosol increases to 17.3-13.8% (0.22-0.17 ml/min); with normal breathing the deposition was only 9%. In the upper airways we found the following deposition rates: Nose/hypopharynx (inhalation via mask) 2.6%; Mouth and pharynx (after rinsing) 1.6%; Larynx 0.1%. A considerable part remains in the inhalation system; by special variations we were able to reduce this portion of the aerosol. After inhaling electro-aerosols (4 kv) the deposition in the lungs was 5.6%; the more the charge was reduced the more the deposition of the aerosol in the lung increased.
Ultrawideband cavity-backed resistively loaded planar dipole array for ground penetrating radar (2013)

An ultrawideband (UWB) cavity-backed resistively loaded planar dipole array antenna has been developed for the 100 to 400 MHz frequency range for ground penetrating radar applications. The antenna has been designed with a 3m aperture to perform surveys of a wide swath of ground from a moving vehicle. The performance of the UWB array is quantified by moment method simulations of the electromagnetic field penetration into lossy soil. Integration of the UWB array onto a vehicle is discussed.