gebhart/patrepeval huggingface dataset:
Increased Circulating Malondialdehyde-Modified LDL Levels in Patients With Coronary Artery Diseases and Their Association With Peak Sizes of LDL Particles (2002)

Recent establishment of a sensitive ELISA system using antibodies against malondialdehyde-modified low density lipoprotein (MDA-LDL) made it possible to determine the circulating oxidized lipoprotein levels. Here, we investigated the serum levels of MDA-LDL in 62 patients with coronary artery disease (CAD) compared with the levels in 42 patients without CAD [groups CAD(+) and CAD(-), respectively], which are adjusted for age, serum total cholesterol, LDL and high density lipoprotein cholesterol, and triglyceride levels. Serum MDA-LDL levels were 113.4+/-49.1 IU/L in CAD(+), which were significantly higher than the levels in CAD(-) (85.2+/-22.5 IU/L, P<0.0005). The ratio of MDA-LDL/LDL cholesterol was 0.95+/-0.32 in CAD(+), indicating a significant increase compared with the ratio in CAD(-) (0.68+/-0.19, P<0.0005). The positive correlation of MDA-LDL level and the ratio of MDA-LDL/LDL cholesterol with intima-media thickness in carotid arteries was observed. Age was not clearly associated with the MDA-LDL level (P=0.865). The serum MDA level was positively correlated with LDL cholesterol (P<0.0001) and with triglycerides (P<0.001) and negatively correlated with high density lipoprotein cholesterol (P<0.05). Furthermore, the MDA-LDL level was negatively correlated with the peak size of the LDL particle (P<0.01). The LDL subclasses that were identified by using the sera collected from the subjects by sequential ultracentrifugation showed that the ratios of MDA-LDL/apolipoprotein B in LDL3 and LDL4 were nearly 3-fold higher than those in LDL1 and LDL2 for CAD(+) and CAD(-). These results indicate that the circulating MDA-LDL level is increased in CAD(+), independent of the serum LDL cholesterol level but in association with the peak size of LDL particles. The measurement of serum MDA-LDL level may be useful for the identification of patients with advanced atherosclerosis.
A rule based approach for visual pattern inspection (1988)

The authors investigate the use of a priori knowledge about a scene to coordinate and control bilevel image segmentation, interpretation, and shape inspection of different objects in the scene. The approach is composed of two main steps. The first step consists of proper segmentation and labeling of individual regions in the image for subsequent ease in interpretation. General as well as scene-specific knowledge is used to improve the segmentation and interpretation processes. Once every region in the image has been identified, the second step proceeds by testing different regions to ensure they meet the design requirements, which are formalized by a set of rules. Morphological techniques are used to extract certain features from the previously processed image for rule verification purposes. As a specific example, results for detecting defects in printed circuit boards are presented.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Quantification and comparison of visibility and image artifacts of a new liquid fiducial marker in a lung phantom for image-guided radiation therapy (2015)

The visibility and the image artifacts produced by the new liquid fiducial markers were comparable to existing solid fiducial markers and the existing liquid fiducial marker. The authors conclude that the new liquid fiducial marker represents an alternative to the fiducial markers tested.
Pharmacokinetic-driven phase I study of DCC-2618 a pan-KIT and PDGFR inhibitor in patients (pts) with gastrointestinal stromal tumor (GIST) and other solid tumors. (2017)

2515 Background: DCC-2618 is a potent switch control inhibitor of KIT and PDGFR kinases active in a broad range of mutations. GIST is an important disease to achieve a proof-of-concept due to the heterogeneity of KIT resistance mutations, which emerge on treatment with approved KIT inhibitors. Methods: This was a PK-guided dose escalation study of oral DCC-2618 (QD or BID q28 days) in advanced solid tumors. FDG-PET scans were used to assess changes in FDG uptake in GIST pts after 3 wks of therapy. Next generation sequencing (NGS) of plasma cell-free (cf) DNA was performed throughout the study to assess and quantify KIT and other molecular alterations in drug targets and potential mechanisms of resistance. Results: 38 pts were enrolled (30 GIST; 4 glioma; 1 mastocytosis, 3 other carcinoma) to 8 dose levels: BID doses: 20 (4 pts), 30 (4), 50 (5), 100 (6), 150 (6) and 200 mg (3); QD doses: 100 (5) and 150 mg (4). Safety of evaluable pts is as follows: G3 or G4 adverse effects (regardless of attribution and occurring in > 1 pt) included anemia (5), lipase increase (4), hypertension (2). Two of the G3/4 lipase increase at 100 mg BID and 200 mg BID were DLTs. All G3/4 lipase increase were asymptomatic. G1/2 AEs (considered at least possibly related to DCC-2618) and occurring in ≥15% (n > 5) of pts include fatigue (12), alopecia & lipase increase (7), weight decrease (6). Starting with 50 mg BID dose level, trough concentrations of total drug exceeded the IC90 of the least sentivitive KIT mutations. Plasma concentrations > 5μM were achieved starting at 100 mg BID and the selection of the expansion phase dose is being finalized. Of 18 pts with KIT mutant GIST assessed by FDG PET, 14 (78%) had partial metabolic response per EORTC criteria. RANO/RECIST partial responses (PRs) were reported in 3 patients (1 GBM with PDGFRA/KIT amplifications and 2 GIST with Ex 11 & 17 / Ex 11 & 18 mutations, respectively). NGS of plasma cfDNA revealed 44 KIT mutations in baseline samples from 19 of 21 pts with GIST. Conclusions: DCC-2618 is well tolerated with encouraging preliminary activity in GIST pts with a broad spectrum of mutations and prior therapies. PR was also seen in a pt with GBM with PDGFRA/KIT amplifications. Clinical trial information: NCT02571036.
A heteroplasmic, not homoplasmic, mitochondrial DNA mutation promotes tumorigenesis via alteration in reactive oxygen species generation and apoptosis (2009)

Mitochondrial alteration has been long proposed to play a major role in tumorigenesis. Recently, mitochondrial DNA (mtDNA) mutations have been found in a variety of cancer cells. In this study, we examined the contribution of mtDNA mutation and mitochondrial dysfunction in tumorigenesis first using human cell lines carrying a frame-shift at NADH dehydrogenase (respiratory complex I) subunit 5 gene (ND5); the same homoplasmic mutation was also identified in a human colorectal cancer cell line earlier. With increasing mutant ND5 mtDNA content, respiratory function including oxygen consumption and ATP generation through oxidative phosphorylation declined progressively, while lactate production and dependence on glucose increased. Interestingly, the reactive oxygen species (ROS) levels and apoptosis exhibited antagonistic pleiotropy associated with mitochondrial defects. Furthermore, the anchorage-dependence phenotype and tumor-forming capacity of cells carrying wild-type and mutant mtDNA were tested by growth assay in soft agar and subcutaneous implantation of the cells in nude mice. Surprisingly, the cell line carrying the heteroplasmic ND5 mtDNA mutation showed significantly enhanced tumor growth, while cells with homoplasmic form of the same mutation inhibited tumor formation. Similar results were obtained from the analysis of a series of mouse cell lines carrying a nonsense mutation at ND5 gene. Our results indicate that the mtDNA mutations might play an important role in the early stage of cancer development, possibly through alteration of ROS generation and apoptosis.
Ultrafast optical and far-infrared quasiparticle dynamics in correlated electron materials (2002)

We review the application of ultrafast optical spectroscopy in the study of correlated electron materials. The emphasis is on all-optical pump–probe and optical pump–far-infrared probe experiments on (a) colossal-magnetoresistance manganites and (b) high-temperature superconductors. The experimental techniques are discussed followed by a brief review of ultrafast electron dynamics in conventional wide-band metals which serves as a starting point in understanding the dynamics in more complex metallic systems. In the half-metallic manganites, the quasiparticle dynamics in the ferromagnetic metallic state can be understood in terms of a dynamic transfer of spectral weight which is influenced by the lattice and spin degrees of freedom. For the high-temperature superconductors, ultrafast quasiparticle dynamics are sensitive to the order parameter and superconducting pair recovery occurs on a picosecond timescale. These results show that, in general, ultrafast optical spectroscopy provides a sensitive method to probe the dynamics of quasiparticles at the Fermi level.
Distributed gate ESD network architecture for inter-power domain signals (2004)

This paper examines the issue of transmitting signals between circuits of different power domains within an IC and the ESD sensitivity of the receiving logic's oxide in advanced processes. It is also shown that the ESD stress voltage appearing across a receiving gate's oxide can be distributed among several inverters. Also, design of interface attenuation networks that allow large voltage drops between domains for both CDM and HBM tests will be examined.
Synaptopodin-2 induces assembly of peripheral actin bundles and immature focal adhesions to promote lamellipodia formation and prostate cancer cell migration (2015)

Synaptopodin-2 (Synpo2), an actin-binding protein and invasive cancer biomarker, induces formation of complex stress fiber networks in the cell body and promotes PC3 prostate cancer cell migration in response to serum stimulation. The role of these actin networks in enhanced cancer cell migration is unknown. Using time-course analysis and live cell imaging of mock- and Synpo2-transduced PC3 cells, we now show that Synpo2 induces assembly of actin fibers near the cell periphery and Arp2/3-dependent lamellipodia formation. Lamellipodia formed in a non-directional manner or repeatedly changed direction, explaining the enhanced chemokinetic activity of PC3 cells in response to serum stimulation. Myosin contraction promotes retrograde flow of the Synpo2-associated actin filaments at the leading edge and their merger with actin networks in the cell body. Enhanced PC3 cell migration correlates with Synpo2-induced formation of lamellipodia and immature focal adhesions (FAs), but is not dependent on myosin contraction or FA maturation. The previously reported correlation between Synpo2-induced stress fiber assembly and enhanced PC3 cell migration therefore reflects the role of Synpo2 as a newly identified regulator of actin bundle formation and nascent FA assembly near the leading cell edge.
Two-stage microfluidic device for acoustic particle manipulation (2011)

In this paper, we introduce a novel surface acoustic wave (SAW) based two-stage microfluidic platform for continuous particle focusing and separation. The driving force is acoustic radiation force generated by surface acoustic waves in a microfluidic device over a piezoelectric substrate. The prominent features of this two-stage sorter are that particle focusing and separation are accomplished simultaneously and the sorter doesn't require the use of the sheath flow for positioning or aligning of particles, thereby decreasing the complexity. Moreover, no physical contact is needed between the ultrasonic transducer and the medium. The ultrasonic treatment has not been shown to damage cells or biological material as well. Prior to separation, the particles are lined up to the center of the channel in the first stage without adding any sheath flow. After passing the first stage, the larger particles move to the pressure node more quickly than the smaller particles according to the difference of the acoustic forces acting on them. As the acoustic force is proportional to the volume of the particles, the larger particles are subjected to larger acoustic force. Consequently, the flow focused particles are separated with different lateral displacement along the cross-section of the channel. In the present paper, we discuss our design and fabrication efforts as well as review state-of-the-art particles manipulation techniques that are currently employed.
Frequent methylation of estrogen receptor in prostate cancer: correlation with tumor progression. (2000)

Prior studies have shown that the estrogen receptor (ER) gene is down-regulated in prostate cancer, but the mechanism of its inactivation is not known. We hypothesize that inactivation of the ER gene in prostate cancer is through promoter methylation. To test this hypothesis, we investigated the methylation status of the ER gene in prostate cancer cell lines, prostate cancer, and benign prostatic hyperplasia (BPH) tissues samples using the bisulfite genomic sequencing method. Our results show that the ER gene promoter was methylated in 100% (six of six) of the prostate cancer cell lines tested and all were accompanied by loss of ER mRNA expression. Treatment of these cell lines with demethylating agent 5-aza-2'-deoxycytidine restored ER mRNA expression in all of the ER-negative cell lines. In addition, elevated expression of DNA methyltransferase mRNA was found in all of the prostate cancer cell lines. Of the prostate tissue samples analyzed, 60% (6 of 10) in the BPH samples, 80% (8 of 10) in the low-grade cancer samples (grades I and II), and 95% (20 of 21) in the high-grade cancer samples (grades III-V) exhibited promoter methylation of the ER gene. The overall methylation levels in the cancer samples were higher than that in the BPH samples. The differences between the high-grade cancer samples and BPH samples were significant at all CpG sites. Only at three CpG sites were the differences significant between the low-grade cancer samples and BPH samples. This study presents the first evidence that ER gene is transcriptionally inactivated by DNA methylation in prostate cancer. Our data suggest that ER may be involved in the pathogenesis of prostate cancer, as well as BPH.
ERP Implementation in State Government (2003)

In the early 1990s, enterprise resource planning (ERP) emerged as the business standard for enterprise computing. The concepts associated with ERP, i.e., integration, standardization and process-centering, are indeed powerful and profound. Private sector organizations embraced this technology for varying reasons. ERP success or failure is determined in large part by how able and willing an organization is to undertake a radical business transformation process. At the dawn of the new century, ERP concepts are beginning to pervade public sector organizations, including state government. As with the private sector, each implementation brings with it unique challenges and opportunities. This case study takes a look at some of the exciting issues associated with the implementation of integrated systems in state government.
Proteomic Studies of <i>Bacillus Anthracis</i> (2009)

Bacillus anthracis is a Gram-positive, spore-forming bacterium representing the etiological cause of anthrax, a rare lethal disease of animals and humans. Development of anthrax countermeasures has gained increasing attention owing to the potential use of B. anthracis spores as a bioterror weapon. The various forms of infection by B. anthracis are characterized both by toxemia and septicemia, both of which are the result of spore entry into the host followed by their germination into rapidly multiplying, toxin-producing bacilli. Following the publication of the bacterial genome, proteomic studies were carried out to determine the protein composition of the spore and identify exposed vegetative (membrane-located or secreted) proteins. These studies included comparison of strains differing in their virulence, cultured under different conditions and, in some cases, were complemented by serological inspection, which addressed expression during infection of proteomically identified proteins and their immunogenicity. The proteomic approach emerged as a valuable strategy for the generation of a pool of potential B. anthracis protein targets for further evaluation in detection, diagnostics, therapy and prophylaxis, and contributed to the elucidation of some aspects of the pathogenesis of the disease.
선회중 전복한 저건현 내항 탱커의 복원성에 관한 연구 (1) (2002)

전복한 저건현 내항 탱커의 사고 원인을 조사하기 위하여 복원성에 영향을 미치는 자유표면영향과 저건현 선박에서 발생하는 해수침입, 침수침하 현상에 대하여 알아보았다. 그리고 선회시에 발생하는 경사 모멘트를 계산하고 사고 선박의 경사 모멘트를 추정하였다. 이상의 결과로부터 사고 선박의 복원성 상실에 의한 전복 원인을 고찰하였다.
Structure and photoconductive behaviour of a sanidic liquid crystal (2000)

Abstract A series of [1]benzothieno[3,2-b][1]benzothiophene-2,7-dicarboxylate derivatives consisting of a flat, conjugated aromatic moiety containing sulphur hetero-atoms and substituted by terminal chains - ethyl, decyl, Z-4-decenyl or 2-(2-butoxyethoxy)ethyl - has been synthesized. These materials exhibit a smectic liquid crystalline phase, the stability of which was found to be strongly dependent on the length and the nature of the terminal chains. In the mesophase, the molecular arrangement within the smectic layer is characterized by a local stacking of the rigid parts similar to that found in discotic columnar systems. Finally, clear photoconductive behaviour was found in mechanically aligned samples of these liquid crystals.
Anodic oxidation of gadolinium metal in the presence of thenoyltrifluoroacetone (2006)

The possibility of preparing gadolinium chelates of various compositions by electrolysis of a nonaqueous solution containing thenoyltrifluoroacetone was examined.
Eat, but Verify: Low-Cost Portable Devices for Food Safety Analysis (2018)

Illness caused by adulterated and counterfeit foods is a very common health issue for consumers. Food fraud also affects manufacturers by damaging their reputation, resulting in a decrease in market share and consumer trust. Thus, food safety has emerged as a critical issue for consumers and manufacturers alike. Fraudulent food products are often the result of opportunities taken by willful offenders who mislabel, falsify, and/or adulterate for economic gains. In some cases, the contents of a packaged food item may not match its label. In other cases, the labeling may be correct while the product itself is counterfeit. Thus, in today's market where most food items are industrially packaged prior to sale, it is important to prioritize the consumers' right to authentic and safe food products. The solution to this challenge is not to use expensive security measures that increase the final price, but to develop economical and portable food safety, quality assurance, and authentication devices for use at all stages of a food product life cycle-from production to consumption. Such devices would be a game-changer in the field of food safety.
Surface relief and structure of electroexplosive composite surface layers of the molybdenum-copper system (2011)

The surface topography and structure of copper layers exposed to multiphase plasma jets of products of electrical explosion of molybdenum and copper foils are studied using profilometry and scanning electron and light microscopy. Such treatment allows deposition of either layered coatings or alloyed composite layers. It is found that the surface layer roughness parameter is R a = 3.2−4.0 μm. The thickness of some copper and molybdenum layers of coatings is 15–20 μm. Electroexplosive alloying produces layers 25 μm thick. Sizes of copper inclusions in the molybdenum matrix near the surface of such layers vary from 30 nm to 1–2 μm.
Bioceramic Effects to Enhance Secondary Metabolites Production in Tissue Culture of Some Medicinal Plants (2004)

We have investigated that a couple of soft ferrite ceramic powders having a spinal structure have shown the effect on growth and secondary metabolites production of some medicinal plants cultured in vitro. The addition of the ceramic powders as bare state to culture medium has stimulated the growth of Achyranthes japonica callus and plantlet, adventitious root of Hyoscyamus niger and Platycodon grandiflorum hairy root about 65, 75, 150 and 50%, respectively. Whereas Centella asiatica callus and plantlet, Scopolia parviflora hairy root, and Hyoscyamus albus adventitious root were not affected markedly. Moreover, the ceramic powder has enhanced the growth of H. niger adventitious roots even under conditions of irradiating alone without any direct contact between ceramic powder and media. Based on growth stimulation effect, the ceramic powders have enhanced the gross production of tropane alkaloid in H. niger adventitious root, and polyacetylene in P. grandiflorum hairy root about 35 and 30%, respectively.
Vascular cell adhesion molecule-1 is involved in mediating hypoxia- induced sickle red blood cell adherence to endothelium: potential role in sickle cell disease (1996)

We investigated the effects of hypoxia on red blood cell (RBC)-endothelial cell (EC) adherence and the potential mechanism(s) involved in mediating this effect. We report that hypoxia significantly increased sickle RBC adherence to aortic EC when compared with the normoxia controls. However, hypoxia had no effect on the adherence of normal RBCs. In additional studies, we found that the least dense sickle RBCs containing CD36+ and VLA-4+ reticulocytes were involved in hypoxia-induced adherence. We next evaluated the effects of hypoxia on the expression of EC surface receptors involved in RBC adherence to macrovascular ECs, including vascular cell adhesion molecule-1 (VCAM-1), intracellular adhesion molecule-1 (ICAM-1), and the vitronectin receptor (VnR). Hypoxia upregulated the expression of both VCAM-1 and ICAM-1, whereas no effect on VnR was noted. Potential involvement of VCAM-1 and ICAM-1 in mediating hypoxia-induced sickle RBC-EC adhesion was next investigated using monoclonal antibodies against these receptors. Whereas anti-VCAM-1 had no effect on basal adherence, it inhibited hypoxia-induced sickle RBC adherence in a concentration-dependent manner, with 50% to 75% inhibition noted at 10 to 60 micrograms/mL antibody (n = 6, P < .05 to P < .01). Anti-ICAM-1 (10 to 60 micrograms/mL, n = 8) had no effect on either basal or hypoxia-induced adherence. As noted in the bovine aortic ECs, hypoxia stimulated the adherence of sickle RBCs to human retinal capillary ECs, and this response appeared to be mediated via mechanisms similar to those observed with macro-endothelium, ie, via the adhesive receptor combination VCAM-1-VLA-4. Our studies show that hypoxia enhances sickle RBC adhesion to both macrovascular and human microvascular ECs via the adhesive receptor VCAM-1. Our findings are of interest because hypoxia is an integral part of the pathophysiology of the vaso-occlusive phenomenon in sickle cell anemia.
Discussion of papers by Robert Paul Thomas and Aubrey C. Land (1965)

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