gebhart/patrepeval huggingface dataset:
Fate of enterohemorrhagic Escherichia coli O157:H7 in bovine feces (1996)

Dairy cattle have been identified as a principal reservoir of Escherichia coli O157:H7. The fate of this pathogen in bovine feces at 5, 22, and 37 degrees C was determined. Two levels of inocula (10(3) and 10(5) CFU/g) of a mixture of five nalidixic acid-resistant E. coli O157:H7 strains were used. E. coli O157:H7 survived at 37 degrees C for 42 and 49 days with low and high inocula, respectively, and at 22 degrees C for 49 and 56 days with low and high inocula, respectively. Fecal samples at both temperatures had low moisture contents (about 10%) and water activities ( < 0.5) near the end of the study. E. coli O157:H7 at 5 degrees C survived for 63 to 70 days, with the moisture content (74%) of feces remaining high through the study. Chromosomal DNA fingerprinting of E. coli O157:H7 isolates surviving near the completion of the study revealed that the human isolate strain 932 was the only surviving strain at 22 or 37 degrees C. All five strains were isolated near the end of incubation from feces held at 5 degrees C. Isolates at each temperature were still capable of producing both verotoxin 1 and verotoxin 2. Results indicate that E. coli O157:H7 can survive in feces for a long period of time and retain its ability to produce verotoxins. Hence, bovine feces are a potential vehicle for transmitting E. coli O157:H7 to cattle, food, and the environment. Appropriate handling of bovine feces is important to control the spread of this pathogen.
The Principles and Practice of Electron Microscopy (1997)

The first edition of this book was widely praised as an excellent introduction to electron microscopy for materials scientists, physicists, earth and biological scientists. This completely revised new edition contains expanded coverage of existing topics and much new material. The author presents the subject of electron microscopy in a readable way, open both to those inexperienced in the technique, and also to practising electron microscopists. The coverage has been brought completely up to date, whilst retaining descriptions of early classic techniques. Currently live topics such as computer control of microscopes, energy-filtered imaging, cryo- and environmental microscopy, digital imaging, and high resolution scanning and transmission microscopy are all described. The highly praised case studies of the first edition have been expanded to include some interesting new examples. This indispensable guide to electron microscopy, written by an author with thirty years practical experience, will be invaluable to new and experienced electron microscopists in any area of science and technology.
Proteasome Activator PA28γ-Dependent Nuclear Retention and Degradation of Hepatitis C Virus Core Protein (2003)

Hepatitis C virus (HCV) core protein plays an important role in the formation of the viral nucleocapsid and a regulatory protein involved in hepatocarcinogenesis. In this study, we have identified proteasome activator PA28gamma (11S regulator gamma) as an HCV core binding protein by using yeast two-hybrid system. This interaction was demonstrated not only in cell culture but also in the livers of HCV core transgenic mice. These findings are extended to human HCV infection by the observation of this interaction in liver specimens from a patient with chronic HCV infection. Neither the interaction of HCV core protein with other PA28 subtypes nor that of PA28gamma with other Flavivirus core proteins was detected. Deletion of the PA28gamma-binding region from the HCV core protein or knockout of the PA28gamma gene led to the export of the HCV core protein from the nucleus to the cytoplasm. Overexpression of PA28gamma enhanced the proteolysis of the HCV core protein. Thus, the nuclear retention and stability of the HCV core protein is regulated via a PA28gamma-dependent pathway through which HCV pathogenesis may be exerted.
Coffee, Caffeine, and Cardiovascular Disease in Men (1990)

These findings do not support the hypothesis that coffee or caffeine consumption increases the risk of coronary heart disease or stroke.
NATURAL IMMUNITY TO BACTERIAL INFECTIONS: THE RELATION OF COMPLEMENT TO HEAT-LABILE OPSONINS (1969)

Heat-labile opsonins to pneumococci in normal mammalian sera, unlike antibodies, fail to interact with the bacteria at 0 degrees C and require Ca(++) and/or Mg(++). They are readily removed from serum by antigen-antibody complexes that fix complement (C) and are inhibited by reagents that inactivate various C components. The principal heat-labile opsonin to pneumococci is activated C3 (C3(b)), but a slight enhancing effect is exerted by one or more of the late-reacting components of the hemolytic complement system (C5-C9). Since heat-labile opsonins are immunologically polyspecific, they presumably play a broad protective role in the early (preantibody) phase of acute bacterial infections.
One-Pot Transformation of Trichloroacetamide into Readily Deprotectable Carbamates (2006)

[Structure: see text] A trichloroacetamide group was converted to an isocyanate, which was in situ captured by a variety of alcohols in the presence of CuCl and n-BuN4Cl to afford the corresponding carbamates. The scope and limitation of this transformation are also described.
Temporal Discounting of Reward and the Cost of Time in Motor Control (2010)

Why do movements take a characteristic amount of time, and why do diseases that affect the reward system alter control of movements? Suppose that the purpose of any movement is to position our body in a more rewarding state. People and other animals discount future reward as a hyperbolic function of time. Here, we show that across populations of people and monkeys there is a correlation between discounting of reward and control of movements. We consider saccadic eye movements and hypothesize that duration of a movement is equivalent to a delay of reward. The hyperbolic cost of this delay not only accounts for kinematics of saccades in adults, it also accounts for the faster saccades of children, who temporally discount reward more steeply. Our theory explains why saccade velocities increase when reward is elevated, and why disorders in the encoding of reward, for example in Parkinson's disease and schizophrenia, produce changes in saccade. We show that delay of reward elevates the cost of saccades, reducing velocities. Finally, we consider coordinated movements that include motion of eyes and head and find that their kinematics is also consistent with a hyperbolic, reward-dependent cost of time. Therefore, each voluntary movement carries a cost because its duration delays acquisition of reward. The cost depends on the value that the brain assigns to stimuli, and the rate at which it discounts this value in time. The motor commands that move our eyes reflect this cost of time.
Continuous speech recognition using PLP analysis with multilayer perceptrons (1991)

The authors investigate the use of continuous features derived by perceptual linear predictive (PLP) analysis, examine the effect of adding temporal features, and compare it to the previously studied use of multiframe input. Comparisons of the MLP (multilayer perceptron) and conventional Gaussian classifiers are also reported. The speaker-dependent portion of the Resource Management database was used for this test. Additionally, some experiments were performed with a perplexity-2200 speaker-independent recognition task on a subset of the TIMIT database. In each case, the PLP features were used as input to the networks. The experiments show the advantage of continuous PLP features and their first and second temporal derivatives.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Changes in the relative amount of subunits of methionine adenosyltransferase in human lymphocytes upon stimulation with a polyclonal T cell mitogen. (1992)

Activation of resting human peripheral blood T lymphocytes by the lectin phytohemagglutinin results in an increase in methionine adenosyltransferase (MAT) activity, accompanied by an increase in the amount of the alpha/alpha' catalytic subunits of the enzyme. In contrast, the amount of the noncatalytic beta subunit remains constant throughout the course of the response. Using both polyclonal antibodies to the holoenzyme and monoclonal antibodies to the alpha/alpha' subunits, we detected a cross-reactive 68-kDa protein, which we refer to as lambda. This protein is present in high abundance in resting T cells but decreases upon cell stimulation, as both MAT activity and the amount of the catalytic alpha/alpha' subunits increase. The decrease in lambda and increase in alpha/alpha' occurs after interleukin-2 production and before DNA synthesis. lambda virtually disappears when the cells are actively dividing. Several continuous T cell lines (HPB-ALL, MOLT-4, and Jurkat) as well as a freshly isolated T cell leukemia (ALL-2) had no detectable lambda. The Km for L-methionine for enzyme from resting peripheral blood mononuclear cells was 19-23 microM, which is 3-8-fold higher than purified MAT from fresh leukemic cells or enzyme from Jurkat cells, both of which have a Km of 3.5-3.8 microM. Kinetic analysis of enzyme activity from activated peripheral blood mononuclear cells suggested the presence of two forms of enzyme catalyzing the synthesis of AdoMet. After separation of lambda from the alpha and beta subunits by hydrophobic chromatography, it was determined that lambda has MAT activity but that it is significantly less active than the form containing the alpha subunit. It therefore appears that in resting T cells MAT is sequestered as a less active form. We hypothesize that lambda is a precursor to the catalytic subunits of human lymphocyte MAT and propose that the transition from lambda to alpha/alpha' may be important in the response of T cells to mitogenic signals.
Selective Hydrogenation of the C-C Double Bond of α,β-Unsaturated Carbonyl Compounds by the Immobilized Cells of Nicotiana tabacum (1993)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSelective Hydrogenation of the C-C Double Bond of α,β-Unsaturated Carbonyl Compounds by the Immobilized Cells of Nicotiana tabacumTakayuki Suga and Yi-Xinog TangCite this: J. Nat. Prod. 1993, 56, 8, 1406–1409Publication Date (Print):August 1, 1993Publication History Published online1 July 2004Published inissue 1 August 1993https://doi.org/10.1021/np50098a025Request reuse permissionsArticle Views111Altmetric-Citations6LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (284 KB) Get e-Alertsclose Get e-Alerts
Pregnancy alters glucose-6-phosphate dehydrogenase trafficking, cell metabolism, and oxidant release of maternal neutrophils (2002)

Pregnancy is associated with changes in host susceptibility to infections and inflammatory disease. We hypothesize that metabolic enzyme trafficking affects maternal neutrophil activation. Specifically, immunofluorescence microscopy has shown that glucose-6-phosphate dehydrogenase (G-6-PDase), the rate-controlling step of the hexose monophosphate shunt (HMS), is located near the cell periphery in control neutrophils but is found near the microtubule-organizing centers in cells from pregnant women. Cytochemical studies confirmed that the distribution of the G-6-PDase antigen is coincident with functional G-6-PDase activity. Metabolic oscillations within activated pregnancy neutrophils are higher in amplitude, though lower in frequency, than activated control neutrophils, suggesting limited HMS activity. Analysis of radioisotope-labeled carbon flux from glucose to CO 2 indicates that the HMS is intact in leukocytes from pregnant women, but its level is not enhanced by cell stimulation. Using extracellular fluorescent markers, activated pregnancy neutrophils were found to release reactive oxygen metabolites (ROMs) at a lower rate than activated control neutrophils. However, basal levels of ROM production in polarized pregnancy neutrophils were greater than in control neutrophils. Microtubule-disrupting agents reversed the observed changes in G-6-PDase trafficking, metabolic oscillations, and ROM production by maternal neutrophils. G-6-PDase trafficking appears to be one mechanism regulating ROM production by maternal neutrophils.
Degradation of dielectric breakdown field of thermal SiO2 films due to structural defects in Czochralski silicon substrates (1996)

We used heat treatment to intentionally introduce various structural defects in Czochralski silicon substrates. The type, size, and number density of the induced defects were surveyed with transmission electron microscopy, and the defects were then incorporated into SiO2 films (10–50 nm thick) during thermal oxidation in dry O2. The effect of the defects on dielectric strength of the SiO2 films was examined with a time zero dielectric breakdown method. Larger platelet oxygen precipitates caused greater decreases of the breakdown field, and precipitates smaller than the SiO2 film thickness did not appreciably reduce the breakdown field. Every large platelet oxygen precipitate incorporated in the SiO2 film caused a degradation. Octahedral oxygen precipitates caused little degradation. The breakdown field was higher than 7 MV/cm and did not depend much on the SiO2 film thickness and precipitate size. We discussed possible mechanisms for the degradation due to both kinds of precipitates. Oxidation-induced stacking faults formed by a surface oxidation did not markedly reduce the breakdown field when only segments of dislocations and stacking faults were incorporated in the SiO2 film. Another serious degradation was caused by pits that were formed by dissolving octahedral oxygen precipitates in a HF solution. The breakdown field was lower for thicker oxide films, and it recovered as the pit shape became smoother during chemical etching. We proposed that this degradation was caused by a local thinning of SiO2 film due to stress generated in the oxidation of pits. These results suggest that voids rather than the other reported grown-in defects play the most important role in the degradation observed for as-grown silicon.
SYNTHESIZING SELF-SYNCHRONIZING CHAOTIC SYSTEMS (1993)

A systematic approach is developed for synthesizing N-dimensional dissipative chaotic systems which possess the self-synchronization property. The ability to synthesize new chaotic systems further enhances the usefulness of synchronized chaotic systems for communications.
Kibdelosporangium philippinense sp. nov. Isolated from Soil (1988)

A new species of Kibdelosporangium is described. This organism is characterized by white aerial hyphae bearing long chains of smooth-walled spores and abundant sporangiumlike structures. The new species contains meso-diaminopimelic acid, arabinose, and galactose (type IV cell walls, type A whole-cell sugar pattern), phosphatidylethanolamine (type PII phospholipid pattern), and no mycolic acids. The single soil isolate has chemical and morphological properties consistent with the genus Kibdelosporangium. A comparison with previously described species of the genus Kibdelosporangium in which we used standard techniques, fatty acid profiles, and polypeptide banding fingerprints indicated that this strain is a new species. The name proposed for this new species is Kibdelosporangium philippinense. The type strain is strain A80407 (= NRRL 18198).
The implementation of functional languages using custom hardware (2021)

In recent years functional programmers have produced a great many good ideas but few results. While the use of functional languages has been enthusiastically advocated, few real application areas have been tackled and so the functional programmer's views and ideas are met with suspicion. The prime cause of this state of affairs is the lack of widely available, solid implementations of functional languages. This in turn stems from two major causes: (1) Our understanding of implementation techniques was very poor only a few years ago, and so any implementation that is “mature” is also likely to be unuseably slow. (2) While functional languages are excellent for expressing algorithms, there is still considerable debate in the functional programming community over the way in which input and output operations should be represented to the programmer. Without clear guiding principles implementors have tended to produce ad-hoc, inadequate solutions. My research is concerned with strengthening the case for functional programming. To this end I constructed a specialised processor, called SKIM, which could evaluate functional programs quickly. This allowed experimentation with various implementation methods, and provided a high performance implementation with which to experiment with writing large functional programs. This thesis describes the resulting work and includes the following new results: (1) Details of a practical turner-style combinator reduction implementation featuring greatly improved storage use compared with previous methods. (2) An implementation of Kennaway’s director string idea that further enhances performance and increases understanding of a variety of reduction strategies. (3) Comprehensive suggestions concerning the representation of input, output, and nondeterministic tasks using functional languages, and the writing of operating systems. Details of the implementation of these suggestions developed on SKIM. (4) A number of observations concerning fuctional programming in general based on considerable practical experience.
What can we adapt in a Mobile Learning Systems (2006)

Abstract: Adaptativity in mobile learning confronts a set of challenges. First, how to make use of technology without losing pedagogical aspect of learning. Second, how to specify adaptation dimensions, adaptation kinds and different relations between them -what to adapt, how we adapt and what to take into account to adapting-. In order to response to these questions, we begin by reviewing the literature to determine adaptivity dimensions and kinds introduced by the mobility. And then we introduce a proposed framework of adaptive mobile learning that treat the issue of how considering adaptivity dimension not only from a technological point of view but also from a pedagogical point of view. This framework is considered in our researches that are interested in developing mobile learning environments based on an adaptive content and adaptive learning activities. Finally, we detail how we exploit this framework to adapt Web services and SCORM (Shareable Content Object Reference Model).
Characterization of Filter Cake Buildup and Cleanup under Dynamic Fluid Loss Conditions (2011)

Hydraulic fracturing is a popular stimulation method in tight gas and shale gas reservoirs that uses a viscous fluid to fracture the reservoir rock and uniformly transport proppant to create a highly conductive path that is kept open by the proppant after fracturing. This method is used to improve the productivity of the otherwise low permeability reservoirs. Hydraulic fracturing, though in general beneficial, is a complex process that has a number of challenges in fracturing design and execution. This research focuses on studying the damage caused by the fracturing fluid (gel) to the fracture and the conditions to remove the damage. Guar gum and its derivatives have been the most commonly used polymers to increase the viscosity of fracturing fluids. The fracturing fluid gets dehydrated under pressure leaving behind a highly concentrated unbroken residue called filter cake which causes permeability impairment in the proppant pack, resulting in low fracture conductivity and decreased effective fracture length. \nThis study seeks to characterize filter cakes. By measuring its thickness and with the leak off volume, the concentration and yield stress of the filter cake can be estimated. The thickness of the filter cake was measured with a precise laser profilometer. \nCorrelations are proposed to estimate filter cake properties (thickness, concentration and yield stress) based on pumping conditions (pump rate, time and net pressure) and rock properties. With these properties known, a required flow back rate of the reservoir fluid can be estimated to clean up the filter cake modeled as a non-newtonian fluid exhibiting a yield stress.\nTypical field conditions were referenced and scaled down in the lab to closely represent the field conditions. Recommendations are provided on gel damage based on the observation of the study.
A molecular genetic analysis of carotenoid biosynthesis and the effects of carotenoid mutations on other photosynthetic genes in Rhodobacter capsulatus (1989)

The nine known R. capsulatus carotenoid genes are contained within the 46 kilobase (kb) photosynthesis gene cluster. An 11 kb subcluster containing eight of these genes has been cloned and its nucleotide sequence determined. A new gene, crtK, has been located in the middle of the subcluster. The carotenoid gene cluster contains sequences homologous to Escherichia coli ..omega../sup 70/ promoters, rho-independent transcription terminators, and prokaryotic transcriptional factor binding sites. The phenotypes and genotypes of ten transposon Tn5.7 insertion mutations within the carotenoid gene cluster have been analyzed, by characterization of the carotenoids accumulated and high resolution mapping of the Tn5.7 insertions. The enzymatic blockages in previously uncharacterized early carotenoid mutants have been determined using a new in vitro synthesis system, suggesting specific roles for the CrtB and CrtE gene products. The expression of six of the eight carotenoid genes in the cluster is induced upon the shift from dark chemoheterotrophic to anaerobic photosynthetic growth. The magnitude of the induction is equivalent to that of genes encoding structural photosynthesis polypeptides, although the carotenoid genes are induced earlier after the growth shift. Different means of regulating photosynthesis genes in R. capsulatus are discussed, and a rationale for the temporal pattern of expression of the carotenoid genes during photosynthetic adaptation is presented. Comparison of the deduced amino acid sequences of the two dehydrogenases of the R. capsulatus carotenoid biosynthesis pathway reveals two regions of strong similarity. The effect of carotenoid mutations on the photosynthetic phenotype has been studied by examining growth rates, pigments, pigment-protein complexes and gene expression for a complete set of carotenoid mutants. 161 refs.
Eye Movement Recordings: Methods (2007)

The development of oculomotor research is closely related to the development of the technology of eye movement recordings. The first part of this chapter summarizes some cornerstones of the history of eye movement recordings from the 18th century until today and explains the technical principles of the early antecedents of modern recording devices. The four most common recording techniques (electro-oculogram, infrared reflection devices, scleral search coil, and video-oculography) are then compared with respect to the most important system parameters: spatial resolution, temporal resolution, the capability to simultaneously record the multiple degrees of freedom of the eye, the setup complexity, system specific artifacts, and invasiveness. These features determine the suitability of these devices in particular applications.