gebhart/patrepeval huggingface dataset:
Isolation and characterization of revertants from four different classes of aryl hydrocarbon hydroxylase-deficient hepa-1 mutants. (1984)

Revertants were selected from aryl hydrocarbon hydroxylase (AHH)-deficient recessive mutants belonging to three complementation groups and from a dominant mutant of the Hepa-1 cell line. The recessive mutants had low spontaneous reversion frequencies (less than 4 X 10(-7] that were increased by mutagenesis. The majority of these revertants also had reacquired only partial AHH activity. Revertants of group A mutants were identical to the wild type with respect to both in vivo and in vitro enzyme stability and the Km for the substrate, benzo [alpha]pyrene, and therefore failed to provide evidence that gene A is the AHH structural gene. Group B and group C mutants are defective in the functioning of the Ah receptor required for AHH induction. Revertants of these groups were normal with respect to in vivo temperature sensitivity for AHH induction and for the 50% effective dose for the inducer, 2,3,7,8-tetrachlorodibenzo-p-dioxin, and thus provided no evidence that the B and C genes code for components of the receptor. Two rare group C revertants possessed AHH activity in the absence of induction. The phenotype of one of these was shown to be recessive to the wild type. Spontaneous revertants of the dominant mutant occurred at a frequency 300-fold greater than those of the recessive mutants, and this frequency was not increased by mutagenesis. These revertants all displayed complete restoration of AHH activity to wild type levels. These observations and the results from cell hybridization studies suggest that the dominant revertants arose by a high frequency event leading to functional elimination of the dominant mutation.
Evaluation of Bacterial Resistance to Essential Oils and Antibiotics After Exposure to Oregano and Cinnamon Essential Oils (2012)

Essential oils (EOs) are excellent antimicrobial agents sometimes used in active food packaging. This work studies the susceptibility of 48 clinical isolates and 12 reference strains of Gram-negative bacilli to oregano essential oil, cinnamon essential oil, and combinations of both. Furthermore, the tendency of the clinical isolates to develop resistance to these EOs and to different antibiotics after sequential oregano or cinnamon exposure was studied. For this purpose, antibiotic susceptibility (through disk diffusion assays and minimum inhibitory concentration [MIC] determination) and oregano and cinnamon susceptibility (through MIC and minimum bactericidal concentration [MBC] determination) were compared after 50 passages in the presence or absence of subinhibitory concentrations of oregano and cinnamon essential oils. The results showed that all strains were susceptible to both EOs and their combination independently of the antibiotic resistance profile. In addition, neither synergistic nor antagonistic effects were observed between oregano and cinnamon essential oils at the concentrations tested. After the sequential exposure to both EOs, only Serratia marcescens, Morganella morganii, and Proteus mirabilis treated with oregano changed their antibiotic resistance profile and/or increased their resistance to this EO. However, the changes in antibiotic and oregano resistance were not related.
Tunneled Catheters with Taurolidine-Citrate-Heparin Lock Solution Significantly Improve the Inflammatory Profile of Hemodialysis Patients (2014)

Mortality and morbidity are significantly higher among patients with dialysis catheters, which has been associated with chronic activation of the immune system. We hypothesized that bacteria colonizing the catheter lumen trigger an inflammatory response. We aimed to evaluate the inflammatory profile of hemodialysis patients before and after locking catheters with an antimicrobial lock solution. High-sensitivity C-reactive protein (hs-CRP), interleukin-6 (IL-6), IL-10, and tumor necrosis factor alpha (TNF-α) were measured in serum, and levels of mRNA gene expression of IL-6, IL-10, and TNF-α were analyzed in peripheral blood mononuclear cells (PBMC). Samples were obtained at baseline and again after 3 months' use of taurolidine-citrate-heparin lock solution (TCHLS) in 31 hemodialysis patients. The rate of catheter-related bloodstream infections (CRBSI) was 1.08 per 1,000 catheter-days in the heparin period and 0.04 in the TCHLS period (P = 0.023). Compared with the baseline data, serum levels of hs-CRP and IL-6 showed median percent reductions of 18.1% and 25.2%, respectively (P < 0.01), without significant changes in TNF-α or IL-10 levels. Regarding cytokine gene expression in PBMC, the median mRNA expression levels of TNF-α and IL-6 decreased by 20% (P < 0.05) and 19.7% (P = 0.01), respectively, without changes in IL-10 expression levels. The use of TCHLS to maintain the catheter lumen sterility significantly reduces the incidence of CRBSI and improves the inflammatory profile in hemodialysis patients with tunneled catheters. Further studies are needed to evaluate the potential beneficial effects on clinical outcomes.
Thermoelectric power of semiconductors in the extreme quantum limit. II. The "phonon-drag" contribution (1975)

We develop a study of the effect of the quantization of the electron energy levels in a strong magnetic field $H$ on the "phonon-drag" contribution ${S}_{p}$ of the transverse thermoelectric power of a high-purity isotropic semiconductor ($n$-type gallium arsenide, GaAs) in the extreme quantum limit. A theoretical expression for ${S}_{p}$ is derived, assuming that (i) all the electrons in the conduction band are accommodated in the $n=0$ Landau level (extreme quantum limit), (ii) the quantum number $n=0$ does not change during scattering (because of insufficient energy exchange between the electrons and the phonon system), (iii) the electron-phonon interaction occurs through the deformation-potential scattering (in the strong-field region, the scattering via the piezoelectric-coupling mechanism can be ignored), and (iv) the effect of spin splitting is neglected. The results, which are valid to the first order in the electric field and to the second order in the electron-phonon interaction (first Born approximation), show that the transition to nondegeneracy in the electron distribution, which takes place when the bottom of the lowest Landau level approaches within a few ${k}_{B}T$ the Fermi level at very low temperatures, has a large effect on the variation of ${S}_{p}$ with magnetic field. The curves of $|{S}_{p}| \mathrm{vs} H$ at first rise very rapidly with increasing $H$, and then tend to saturate as the electron distribution becomes nondegenerate. This tendency to saturate is more and more pronounced as the temperature is decreased. Numerical calculations are carried out for $n$-type GaAs with an electron concentration of 1.2 \ifmmode\times\else\texttimes\fi{} ${10}^{16}$ ${\mathrm{cm}}^{\ensuremath{-}3}$.
Is 2% hydroxypropylmethylcellulose a safe solution for intraoperative clinical applications? (1986)

We examined 2% hydroxypropylmethylcellulose prepared for clinical intraocular surgical procedures in various laboratories. Each sample contained a variety of particulate debris of botanical origin, although in varying amounts. The identified material was also seen in a sample of the raw material from which all the clinical material had been prepared. Our conclusion is that filtration methods, which are the physical methods used to purify the product, are at worst ineffective and at best inadequate. Until proper laboratory and clinical studies confirm an acceptable level of adverse reactions, we recommend that this material not be used clinically.
Energy consumption in paraplegic ambulation using the reciprocating gait orthosis and electric stimulation of the thigh muscles. (1990)

The energy consumption of six thoracic paraplegic persons ambulating in the reciprocating gait orthosis (RGO) with and without functional electric stimulation (FES) of their thigh muscles was determined as a function of walking speed. Plots of Kcal/kg-min and Kcal/kg-m vs walking speed in the RGO and RGO & FES were experimentally determined in this study and compared with the energy cost of walking in the long leg brace (LLB), the hip guidance orthosis (HGO), and an FES walking aid from data available in the literature. The RGO powered with electric stimulation of the thigh muscles required the lowest energy expenditure in Kcal/kg-m across the full range of walking speeds. The RGO, HGO, LLB, and FES walking orthoses ranked second, third, fourth, and fifth respectively. The lowest energy costs in Kcal/kg-min were associated with the RGO & FES, followed by the RGO, HGO, LLB, and FES for walking speeds below .28m/sec. At walking speeds higher than .28m/sec the HGO demonstrates lower energy cost followed by the RGO & FES, RGO, FES, and LLB. At the end of a 30-m walk, patients using the RGO & FES had a mean heart rate (HR) which was 12 beats/min less than the mean HR when using the RGO without FES, 31 beats/min less than the HR when using the LLB, and 42 beats/min less than the HR when using FES only. It was concluded that the FES-powered RGO combines the advantages of a passive mechanical orthosis with those of FES to provide substantial improvements in energy cost which may provide paraplegic persons with a mode of independent ambulation superior to the wheelchair.
A feasibility pump algorithm embedded in an annealing framework (2019)

The feasibility pump algorithm is an efficient primal heuristic for finding feasible solutions to mixed-integer programming problems. The algorithm suffers mainly from fast convergence to local optima. In this paper, we investigate the effect of an alternative approach to circumvent this challenge by designing a two-stage approach that embeds the feasibility pump heuristic into an annealing framework. The algorithm dynamically breaks the discrete decision variables into two subsets based on the fractionality information obtained from prior runs, and enforces integrality on each subset separately. The feasibility pump algorithm iterates between rounding a fractional solution to one that is integral and projecting an infeasible integral solution onto the solution space of the relaxed mixed-integer programming problem. These two components are used in a Monte Carlo search framework to initially promote diversification and focus on intensification later. The computational results obtained from solving 91 mixed-binary problems demonstrate the superiority of our new approach over Feasibility Pump 2.0.
Distributed Representations for Unsupervised Semantic Role Labeling (2015)

We present a new approach for unsupervised semantic role labeling that leverages distributed representations. We induce embeddings to represent a predicate, its arguments and their complex interdependence. Argument embeddings are learned from surrounding contexts involving the predicate and neighboring arguments, while predicate embeddings are learned from argument contexts. The induced representations are clustered into roles using a linear programming formulation of hierarchical clustering, where we can model task-specific knowledge. Experiments show improved performance over previous unsupervised semantic role labeling approaches and other distributed word representation models.
Segmentation of prostate boundaries from ultrasound images using statistical shape model (2003)

This paper presents a statistical shape model for the automatic prostate segmentation in transrectal ultrasound images. A Gabor filter bank is first used to characterize the prostate boundaries in ultrasound images in both multiple scales and multiple orientations. The Gabor features are further reconstructed to be invariant to the rotation of the ultrasound probe and incorporated in the prostate model as image attributes for guiding the deformable segmentation. A hierarchical deformation strategy is then employed, in which the model adaptively focuses on the similarity of different Gabor features at different deformation stages using a multiresolution technique, i.e., coarse features first and fine features later. A number of successful experiments validate the algorithm.
Asymmetry in the auditory brainstem response following experience of monaural amplification (2007)

Hearing aids can induce perceptual changes in some elderly listeners and there is recent evidence that this might be associated with reorganization within the auditory system. We compared the click-evoked auditory brainstem response in adults with and without monaural hearing aid experience. In listeners with monaural hearing aid experience, the mean peak-to-peak amplitude between wave V and SN10 was approximately 100 nV larger in the ear with hearing aid experience and this difference was statistically significant (P<0.01). The response was symmetrical in adults with no hearing aid experience. This suggests that hearing aids can induce physiological changes at the level of the auditory brainstem in elderly monaural hearing aid users.
Effect of OATP1B Transporter Inhibition on the Pharmacokinetics of Atorvastatin in Healthy Volunteers (2006)

The inhibition of hepatic uptake transporters, such as OATP1B1, on the pharmacokinetics of atorvastatin is unknown. Here, we investigate the effect of a model hepatic transporter inhibitor, rifampin, on the kinetics of atorvastatin and its metabolites in humans. The inhibitory effect of a single rifampin dose on atorvastatin kinetics was studied in 11 healthy volunteers in a randomized, crossover study. Each subject received two 40-mg doses of atorvastatin, one on study day 1 and one on study day 8, separated by 1 week. One intravenous 30-min infusion of 600 mg rifampin was administered to each subject on either study day 1 or study day 8. Plasma concentrations of atorvastatin and metabolites were above the limits of quantitation for up to 24 h after dosing. Rifampin significantly increased the total area under the plasma concentration-time curve (AUC) of atorvastatin acid by 6.8+/-2.4-fold and that of 2-hydroxy-atorvastatin acid and 4-hydroxy-atorvastatin acid by 6.8+/-2.5- and 3.9+/-2.4-fold, respectively. The AUC values of the lactone forms of atorvastatin, 2-hydroxy-atorvastatin and 4-hydroxy-atorvastatin, were also significantly increased, but to a lower extent. An intravenous dose of rifampin substantially increased the plasma concentrations of atorvastatin and its acid and lactone metabolites. The data confirm that OATP1B transporters represent the major hepatic uptake systems for atorvastatin and its active metabolites. Inhibition of hepatic uptake may have consequences for efficacy and toxicity of drugs like atorvastatin that are mainly eliminated by the hepatobiliary system.
Cyclic Guanidines; III<sup>1</sup>Synthesis of Novel 8,13,15-Triazasteroids and Related Heterocycles (1990)

The Pictet-Spengler reaction is utilized for the generation of 8,13,15-triazasteroids and related multicyclic compounds. The constitution of 7a is elucidated by NMR- and X-ray analysis. A second route to the triazasteroid ring system by Bischler-Napieralski type cyclization is disclosed. Synthetic alternatives as well as the variability in size and nature of rings A, B, C and D of the steroid-like skeletons are demonstrated. Synthesis covers 14 new tetra- and pentacyclic compounds on the basis of 9 novel ring systems.
The design of an audio-frequency active RC band-pass filter for a specific engineering requirement (1972)

An engineering requirement for an audio-frequency band-pass filter can be met with an active RC filter which uses positive impedance convertors to simulate the inductors of an LC filter. Because of the low sensitivity of this type of realization, the component tolerances required are compatible with thick film technology.
Covalent Post‐Functionalization of Zeolitic Imidazolate Framework ZIF‐90 Membrane for Enhanced Hydrogen Selectivity (2011)

MOF constrictor: Covalent modification of a ZIF-90 membrane was achieved by imine condensation of the aldehyde groups of the metal–organic framework (MOF) linker by ethanolamine (see picture). The modification leads to constriction of the pore apertures and prevents unselective permeation through defect pores, thus improving gas separation performance. For a H2/CO2 mixture, selectivity can be increased from 7.3 to 62.5.
Maximum Margin Clustering with Multivariate Loss Function (2009)

This paper presents a simple but powerful extension of the maximum margin clustering (MMC) algorithm that optimizes multivariate performance measure specifically defined for clustering, including normalized mutual information, rand index and F-measure. Different from previous MMC algorithms that always employ the error rate as the loss function, our formulation involves a multivariate loss function that is a non-linear combination of the individual clustering results. Computationally, we propose a cutting plane algorithm to approximately solve the resulting optimization problem with a guaranteed accuracy. Experimental evaluations show clear improvements in clustering performance of our method over previous maximum margin clustering algorithms.
Pediocin 5 production and plasmid stability during continuous free and immobilized cell cultures of Pediococcus acidilactici UL5 (1996)

Continuous production of pediocin 5 from Pediococcus acidilactici UL5 was investigated in MRS medium at different pH and dilution rates during continuous free cell (FC) and immobilized cell (IC) fermentations. Pediocin 5 activity from FC operated at a dilution rate of 0.31 h-1 largely increased from 128 to 2048 AU mL-1 as pH decreased from 7.0 to 5.0. Pediocin 5 activity in IC at a dilution rate of 0.93 h-1 was much less affected by pH, varying from 256 AU mL-1 at pH 7.0 to 512 AU mL-1 at pH 5.0. At the optimum pH 5.0, the dilution rate greatly influenced pediocin 5 activity both in FC and IC. Pediocin 5 production during continuous FC culture decreased with time for all dilution rates tested except 0.31 h-1 and average activity over 144 h cultures reached a maximal value of 4915 AU mL-1 at a dilution rate of 0.26 h-1. For IC, pediocin 5 production was stable with time and increased with the dilution rate from 256 to 1024 AU mL-1 in the range of 0.47-2.28 h-1. Three Listeria strains were tested for their ability to screen low bacteriocin-producing variants (Bac+v) of Bac+ cells in FC and IC cultures by using a modified deferred antagonism method. Ten to 28% of Bac+v cells appeared after 144 h of FC cultures at dilution rates in the range 0.09-0.42 h-1 and pH control set points of 5.0-7.0 while almost no Bac+v cell was detected during 192 h IC culture in the same pH range and for dilution rates varying from 0.47 to 2.28 h-1. The Bac+v cells isolated produced eight- to 64-fold less pediocin 5 than the Bac+ cells. Although electrophoresis analysis showed no apparent difference in the plasmid profiles of Bac+v and Bac+ cells, the Bac- mutant obtained by acriflavine treatment had lost the pMJ5 plasmid encoding for bacteriocin production. The decreased quantity of plasmid DNA in Bac+v cells suggests that the decreased pediocin 5 activity of Bac+v cells resulted from a decrease in plasmid copy number.
Sacral ulcers following cardiac surgery: incidence and risks. (1994)

This study examined the incidence and risk factors that relate to the development of sacral pressure ulcers following elective cardiac surgery. Perioperative variables were assessed using 136 adult patients. Ulcers, including 16 Stage I and 21 Stage II-III, occurred on 27.2% (n = 37) of the patients. Factors such as older age, transfer from another hospital, and a history of diabetes, were associated with ulcer development. These findings may be used to identify patients at risk for pressure ulcers during cardiac surgery.
Gradual reset and set characteristics in yttrium oxide based resistive random access memory (2019)

Abstract This paper addresses the resistive switching behavior in yttrium oxide based resistive random access memory (RRAM) (TiN/yttrium oxide/Pt) devices. We report the coexistence of bipolar and unipolar resistive switching within a single device stack. For bipolar DC operation, the devices show gradual set and reset behavior with resistance ratio up to two orders of magnitude. By using nanosecond regime pulses (20 to 100 ns pulse width) of constant voltage amplitude, this gradual switching behavior could be utilized in tuning the resistance during set and reset spanning up to two orders of magnitude. This demonstrates that yttrium oxide based RRAM devices are alternative candidates for multibit operations and neuromorphic applications.
Rational Design of Human DNA Ligase Inhibitors that Target Cellular DNA Replication and Repair (2008)

Based on the crystal structure of human DNA ligase I complexed with nicked DNA, computer-aided drug design was used to identify compounds in a database of 1.5 million commercially available low molecular weight chemicals that were predicted to bind to a DNA-binding pocket within the DNA-binding domain of DNA ligase I, thereby inhibiting DNA joining. Ten of 192 candidates specifically inhibited purified human DNA ligase I. Notably, a subset of these compounds was also active against the other human DNA ligases. Three compounds that differed in their specificity for the three human DNA ligases were analyzed further. L82 inhibited DNA ligase I, L67 inhibited DNA ligases I and III, and L189 inhibited DNA ligases I, III, and IV in DNA joining assays with purified proteins and in cell extract assays of DNA replication, base excision repair, and nonhomologous end-joining. L67 and L189 are simple competitive inhibitors with respect to nicked DNA, whereas L82 is an uncompetitive inhibitor that stabilized complex formation between DNA ligase I and nicked DNA. In cell culture assays, L82 was cytostatic whereas L67 and L189 were cytotoxic. Concordant with their ability to inhibit DNA repair in vitro, subtoxic concentrations of L67 and L189 significantly increased the cytotoxicity of DNA-damaging agents. Interestingly, the ligase inhibitors specifically sensitized cancer cells to DNA damage. Thus, these novel human DNA ligase inhibitors will not only provide insights into the cellular function of these enzymes but also serve as lead compounds for the development of anticancer agents.
Pericardium modulates left and right ventricular stroke volumes to compensate for sudden changes in atrial volume (2003)

The pericardium may modulate acute compensatory changes in stroke volumes seen with sudden changes in cardiac volume, but such a mechanism has never been clearly demonstrated. In eight open-chest dogs, we measured left and right ventricular pressures, diameters, stroke volumes, and pericardial pressures during rapid (approximately 300 ms) systolic infusions or withdrawals of approximately 25 ml blood into and out of the left atrium and right atrium. Control beats, the infusion/withdrawal beat, and 4-10 subsequent beats were studied. With infusions, ipsilateral ventricular end-diastolic transmural pressure, diameter, and stroke volume increased. With the pericardium closed, there was a compensatory decrease in contralateral transmural pressure, diameter, and stroke volume, mediated by opposite changes in transmural end-diastolic pressures. The sum of the ipsilateral increase and contralateral decrease in stroke volume approximated the infused volume. Corresponding changes were seen with blood withdrawals. This direct ventricular interaction was diminished when pericardial pressure was <5 mmHg and absent when the pericardium was opened. Pericardial constraint appears essential for immediate biventricular compensatory responses to acute atrial volume changes.
Structure and function of the potyvirus genome with special reference to the coat protein coding region (1991)

(1991). Structure and function of the potyvirus genome with special reference to the coat protein coding region. Canadian Journal of Plant Pathology: Vol. 13, No. 2, pp. 178-191.