gebhart/patrepeval huggingface dataset:
Optimization of nonbinary slanted surface-relief gratings as high-efficiency broadband couplers for light guides (2010)

We propose and investigate the use of slanted surface-relief gratings with nonbinary profiles as high-efficiency broadband couplers for light guides. First, a Chandezon-method-based rigorous numerical formulation is presented for modeling the slanted gratings with overhanging profiles. Then, two typical types of slanted grating couplers--a sinusoidal one and a trapezoidal one--are studied and optimized numerically, both exhibiting a high coupling efficiency of over 50% over the full band of white LED under the normal illumination of unpolarized light. Reasonable structural parameters with nice tolerance have been obtained for the optimized designs. It is found that the performance of the couplers depends little on the grating profile shape, but primarily on the grating period and the slant angle of the ridge. The underlying mechanism is analyzed by the equivalence rules of gratings, which provide useful guidelines for the design and fabrication of the couplers. Preliminary investigation has been performed on the fabrication and replication of the slanted overhanging grating couplers, which shows the feasibility of fabrication with mature microfabrication techniques and the perspective for mass production.
Importance of E-Selectin for Firm Leukocyte Adhesion In Vivo (1998)

Leukocyte adhesion under flow is preferentially mediated by the selectins. In this study we used intravital microscopy to investigate whether E-selectin may promote firm leukocyte adhesion in vivo. E-Selectin is expressed by endothelial cells activated with tumor necrosis factor-alpha (TNF-alpha) and causes slow leukocyte rolling. Microinjection of formyl-methionyl-leucyl-phenylalanine (fMLP) or macrophage inflammatory protein-2 (MIP-2) next to a venule of the TNF-alpha-treated mouse cremaster muscle significantly increased the number of adherent leukocytes. In gene-targeted mice homozygous for a null mutation in the E-selectin gene or in wild-type mice treated with an E-selectin monoclonal antibody (mAb), this response was significantly attenuated (by >80%). No such defect was seen in intercellular adhesion molecule-1 (ICAM-1)-deficient mice. E-Selectin-null mice showed more rapid leukocyte rolling than wild-type or ICAM-1-deficient mice, resulting in significantly shortened leukocyte transit times through venules. Topical application of fMLP onto the whole cremaster muscle generated the same number of adherent leukocytes in wild-type and E-selectin-deficient mice. We conclude that slow leukocyte rolling through E-selectin results in long transit times, which are essential for efficient leukocyte adhesion in response to a local chemotactic stimulus.
Redundancy of C/EBP alpha, -beta, and -delta in supporting the lipopolysaccharide-induced transcription of IL-6 and monocyte chemoattractant protein-1. (1998)

C/EBP alpha, -beta, and -delta are members of the CCAAT/enhancer binding protein family of transcriptional regulators. All three of these factors are expressed by bone marrow-derived macrophages, with the DNA binding activity of C/EBP beta and -delta increased by treatment with LPS while that of C/EBP alpha is decreased. We have ectopically expressed each C/EBP protein in P388 lymphoblasts. The expression of any of these transcription factors is sufficient to confer the LPS-inducible expression of IL-6 and monocyte chemoattractant protein-1 to lymphoblasts, which normally lack C/EBP factors and do not display LPS induction of proinflammatory cytokines. Thus, the activities of C/EBP alpha, -beta, and -delta are redundant in regard to the expression of IL-6 and monocyte chemoattractant protein-1. Since C/EBP beta-deficient mice have been reported to be largely normal in their expression of proinflammatory cytokines, it is likely that the lack of C/EBP beta is compensated for by the induction of C/EBP delta upon LPS treatment.
Computer vision applications on graphics processing units (2007)

Over the last few years, commodity Graphics Processing Units (GPUs) have evolved from fixed graphics pipeline processors into more flexible and powerful data-parallel processors. These stream processors are capable of sustaining computation rates of greater than ten times that of a single-core CPU. GPUs are inexpensive and are becoming ubiquitous in a wide variety of computer architectures including desktop and laptop computers, PDAs and cell phones.



This research works investigates possible ways to use modern GPUs for real-time computer vision and pattern classification tasks. Special attention is paid to algorithms, where the power of the CPU is a limiting factor. This is in particular the case for real-time tracking algorithms on video streams, where many candidate regions must be evaluated at once to allow stable tracking of features. They impose a high computational burdon on sequential processing units such as the CPU.

The proposed implementation presented in this thesis is considering standard PC platforms rather than expensive special dedicated hardware to allow a broad variety of users to benefit from powerful computer vision applications. In particular, this thesis includes following topics:



1. First, we present a framework for computer vision on the GPU, which is used as a foundation for the implementation of computer vision methods.

2. We continue with the discussion of GPU-based implementation of Kernel Methods, including Support Vector Machines and Kernel PCA.

3. Finally, we propose GPU-accelerated implementations of two tracking algorithms. The first algorithm uses geometric templates in a gradient vector field. The second algorithm is a color-based approach in a particle filter framework. Both are able to track objects in a video stream.



This thesis concludes with a final discussion of the presented methods and will propose directions for further research work. It will also briefly present the features of the next generation of GPUs.
Optical Monitoring of Tumors in BALB/c Nude Mice Using Optical Coherence Tomography (2013)

We report a method for optical monitoring of tumors in an animal model using optical coherence tomography (OCT). In a spectral domain OCT system, a superluminescent diode light source with a full width of 66 nm at half maximum and peak wavelength of 950 nm was used to take images having an axial resolution of 6.8 <TEX>${\mu}m$</TEX>. Cancer cells of PC-3 were cultured and inoculated into the hypodermis of auricle tissues in BALB/c nude mice. We observed tumor formation and growth at the injection region of cancer cells in vivo and obtained the images of tumor mass center and sparse circumferences. On the <TEX>$5^{th}$</TEX> day from an inoculation of cancer cells, histological images of the tumor region using cross-sectional slicing and dye staining of specimens were taken in order to confirm the correlation with the high resolution OCT images. The OCT image of tumor mass compared with normal tissues was analyzed using its A-scan data so as to obtain a tissue attenuation rate which increases according to tumor growth.
Long-period fiber gratings as ultrafast optical differentiators (2005)

It is demonstrated that a single, uniform long-period fiber grating (LPFG) working in the linear regime inherently behaves as an ultrafast optical temporal differentiator. Specifically, we show that the output temporal waveform in the core mode of a LPFG providing full energy coupling into the cladding mode is proportional to the first derivative of the optical temporal signal (e.g., optical pulse) launched at the input of the LPFG. Moreover, a LPFG providing full energy recoupling back from the cladding mode into the core mode inherently implements second-order temporal differentiation. Our numerical results have confirmed the feasibility of this simple, all-fiber approach to processing optical signals with temporal features in the picosecond and subpicosecond ranges.
Improved elution of isoamylase adsorbed on raw starch and the preservation of purified enzyme (1994)

The isoamylase from Pseudomonas amyloderamosa can be recovered by adsorption—elution on raw starch. In this process, the elution of adsorbed isoamylase was significantly affected by elution design. When the raw starch-enzyme suspension was packed into a funnel-type glass filter instead of being stirred in a flask to elute the adsorbed isoamylase, the recovery was increased from 53.6% to about 81% and the concentration of isoamylase was also increased 42-fold in the eluted solution. The addition of 1% potassium sorbate into the eluted enzyme solution gave a retention of more than 80% of the recovered isoamylase activity in a 5-month storage at 4°C.
Novel Oligonucleotide Analogues Derived From Serine and 4-Hydroxyproline (1999)

Abstract A set of DNA analogues derived from serine and 4-hydroxyproline and containing carboxamidomethyl phosphonate and carboxamidophosphate bonds between monomeric units was synthesized.
Francisella infections in fish and shellfish (2011)

A series of recent reports have implicated bacteria from the family Francisellaceae as the cause of disease in farmed and wild fish and shellfish species such as Atlantic cod, Gadus morhua L., tilapia, Oreochromis spp., Atlantic salmon, Salmo salar L., three-line grunt, Parapristipoma trilineatum (Thunberg), ornamental cichlid species, hybrid striped bass Morone chrysops x M. saxatilis and, recently, a shellfish species, the giant abalone, Haliotisgigantea Gmelin. The range of taxa affected will very probably rise as it is likely that there has been considerable under-reporting to date of these disease agents. In common with other Francisella species, their isolation and culture require specialized solid and liquid media containing cysteine and a source of iron. This likely restricted earlier efforts to identify them correctly as the cause of disease in aquatic animals. The most information to date relates to disease in cod, caused by F. noatunensis and tilapia, caused by F. noatunensis subsp. orientalis (also termed F. asiatica), both causing granulomatous inflammatory reactions. Mortalities in both species can be high and, as the disease can likely be transferred via live fish movements, they pose a significant threat to tilapia and cod aquaculture operations. Although the fish-pathogenic Francisella species are classified in the same genus as the human pathogens F. tularensis, causative agent of tularemia, and F. philomiragia, the risk to humans from the fish and shellfish pathogenic Francisella species is considered very low.
A cross-reactive idiotype on anti-DNA antibodies defines a H chain determinant present almost exclusively on IgG antibodies. (1989)

We have previously reported two anti-idiotypic antibodies, 3I and 8.12, that recognize L chain determinants on anti-DNA antibodies. We have generated a new anti-idiotypic antibody, F4, that recognizes a H chain determinant on cationic anti-DNA antibodies. F4 reactivity is present in high titer in serum of approximately 60% of SLE patients and on 84 of 706 myeloma proteins. It is preferentially associated with 3I reactive L chains. Furthermore, antibodies bearing both the F4 and 3I idiotypic determinants preferentially bind DNA. Amino acid sequencing of H chains isolated from four F4-reactive myeloma proteins suggests that they derive from two currently identified VH gene families. F4 reactivity is restricted almost exclusively to Ig of the IgG isotype suggesting that F4 may recognize either a somatically mutated hypervariable region or a variable region used late in the immune response. F4, therefore, represents a new idiotypic family preferentially associated with auto-Ag specificity and having features of an Ag-driven immune response.
Identifying Effective Signals to Predict Deleted and Suspended Accounts on Twitter Across Languages (2017)

Social networks have an ephemerality to them where accounts and messages are constantly being edited, deleted, or marked as private. This continuous change comes from concerns around privacy, a potential desire for to be forgotten and suspicious behavior. In this study we present a novel task – predicting suspicious e.g., to be deleted or suspended accounts in social media. We analyze multiple datasets of thousands of active, deleted and suspended Twitter accounts to produce a series of predictive representations for the removal or shutdown of an account. We selected these accounts from speakers of three languages – Russian, Spanish, and English to evaluate if speakers of various languages behave differently with regards to deleting accounts. We compared the predictive power of the state-of-the-art machine learning models to recurrent neutral networks trained on previously unexplored features. Furthermore, this work is the first to rely on image and affect signals in addition to language and network to predict deleted and suspended accounts in social media. We found that unlike widely used profile and network features, the discourse of deleted or suspended versus active accounts forms the basis for highly accurate account deletion and suspension prediction. More precisely, we observed that the presence of certain terms in tweets leads to a higher likelihood for that user’s account deletion or suspension. Moreover, despite image and affect signals yield lower predictive performance compared to language, they reveal interesting behavioral differences across speakers of different languages. Our extensive analysis and novel findings on language use and suspicious behavior of speakers of different languages can improve the existing approaches to credibility analysis, disinformation and deception detection in social media.
Pharmacotherapy of bulimia nervosa and binge eating disorder (1995)

This paper reviews the use of medication in the treatment of bulimia nervosa and of binge eating disorder. There is now compelling evidence from double blind, placebo-controlled studies that antidepressant medication is useful in the treatment of bulimia nervosa. What is less clear is which patients are most likely to benefit from antidepressant medications and how to best sequence the various therapeutic interventions available. The utility of antidepressant medications in bulimia nervosa has led to their evaluation in binge eating disorder. The limited information currently available suggests that antidepressant treatment may be associated with a reduction in binge frequency in obese patients with binge eating disorder, but does not lead to weight reduction. Additional studies of the use of medication in the treatment of binge eating disorder and of the role of pharmacotherapy in the treatment of bulimia nervosa are needed.
Estimating Functions of Probability Distributions from a Finite Set of Samples, Part 1: Bayes Estimators and the Shannon Entropy (1994)

We present estimators for entropy and other functions of a discrete probability distribution when the data is a finite sample drawn from that probability distribution. In particular, for the case when the probability distribution is a joint distribution, we present finite sample estimators for the mutual information, covariance, and chi-squared functions of that probability distribution.
Approaches to spatialisation (1998)

This article describes some of the basic principles of acoustics and psychoacoustics related to the spatialisation of sound. It introduces recording and diffusion technologies, including binaural, stereo and surround-sound techniques.
[Starting Alzheimer therapy in early stages whenever possible. Activities of daily living remain intact longer]. (2002)

In recent years, the efficacy of symptomatic antidementive drugs in the treatment of Alzheimer's disease (AD) has been well documented. A prerequisite for maximally effect antidementive treatment is early diagnosis and a subsequent specific diagnostic clarification. A further essential is early initiation of treatment to delay progression of the disease and thus early loss of daily skills and independence ending in the need for intensive nursing care. Currently, cholinesterase inhibitors, the efficacy of which has been confirmed in placebo-controlled multicenter studies, are recommended for the treatment of mild to moderate AD. Further substances with proven efficacy are memantine, ginkgo biloba extract EGb761 and certain classical nootropics. To treat behavioral and other psychological disturbances, symptom-related substances such as selective serotonin reuptake inhibitors and atypical neuroleptics should be employed. In addition to their positive effect on cognitive disturbances, cholinesterase inhibitors also have an appreciable impact on concomitant psychopathological symptoms.
Structures and Properties of Self-Assembled Monolayers of Bistable [2]Rotaxanes on Au (111) Surfaces from Molecular Dynamics Simulations Validated with Experiment (2005)

Bistable [2]rotaxanes display controllable switching properties in solution, on surfaces, and in devices. These phenomena are based on the electrochemically and electrically driven mechanical shuttling motion of the ring-shaped component, cyclobis(paraquat-p-phenylene) (CBPQT(4+)) (denoted as the ring), between a tetrathiafulvalene (TTF) unit and a 1,5-dioxynaphthalene (DNP) ring system located along a dumbbell component. When the ring is encircling the TTF unit, this co-conformation of the rotaxane is the most stable and thus designated the ground-state co-conformer (GSCC), whereas the other co-conformation with the ring surrounding the DNP ring system is less favored and so designated the metastable-state co-conformer (MSCC). We report here the structure and properties of self-assembled monolayers (SAMs) of a bistable [2]rotaxane on Au (111) surfaces as a function of surface coverage based on atomistic molecular dynamics (MD) studies with a force field optimized from DFT calculations and we report several experiments that validate the predictions. On the basis of both the total energy per rotaxane and the calculated stress that is parallel to the surface, we find that the optimal packing density of the SAM corresponds to a surface coverage of 115 A(2)/molecule (one molecule per 4 x 4 grid of surface Au atoms) for both the GSCC and MSCC, and that the former is more stable than the latter by 14 kcal/mol at the optimum packing density. We find that the SAM retains hexagonal packing, except for the case at twice the optimum packing density (65 A(2)/molecule, the 3 x 3 grid). For the GSCC and MSCC, investigated at the optimum coverage, the tilt of the ring with respect to the normal is theta = 39 degrees and 61 degrees, respectively, while the tilt angle of the entire rotaxane is psi = 41 degrees and 46 degrees , respectively. Although the tilt angle of the ring decreases with decreasing surface coverage, the tilt angle of the rotaxane has a maximum at 144 A(2)/molecule (the 4 x 5 grid/molecule) of 50 degrees and 51 degrees for the GSCC and MSCC, respectively. The hexafluorophosphate counterions (PF(6)(-)) stay localized around the ring during the 2 ns MD simulation. On the basis of the calculated density profile, we find that the thickness of the SAM is 40.5 A at the optimum coverage for the GSCC and 40.0 A for MSCC, and that the thicknesses become less with decreasing surface coverage. The calculated surface tension at the optimal packing density is 45 and 65 dyn/cm for the GSCC and MSCC, respectively. This difference suggests that the water contact angle for the GSCC is larger than for the MSCC, a prediction that is verified by experiments on Langmuir-Blodgett monolayers of amphiphilic [2]rotaxanes.
Assay ofmyo-inositol in cerebrospinal fluid and plasma by chemical ionization mass spectrometry of the hexaacetate derivative (1994)

The paper describes a capillary gas chromatographic/mass spectrometric technique to quantitate myo-inositol in cerebrospinal fluid (CSF) and plasma. A highly abundant fragment ion, m/z 373, for the hexaacetate derivative of myo-inositol was generated by chemical ionization (CI). This ion and the analogous ion of hexadeuterated myo-inositol (the internal standard), m/z 379, were both monitored in the assay. CI was performed with acetonitrile vapor in an ion trap mass spectrometer. Microliter quantities of CSF or plasma were mixed with the internal standard, dried and acetylated. After a post-derivatization clean-up, samples were analyzed on a capillary gas chromatograph interfaced with a Finnigan ion trap. Standard curves constructed for both CSF and plasma were linear and reproducible. Absence of matrix effects and good precision in the results indicate the suitability of the technique for critical assays. Results from the determination of myo-inositol in the CSF and plasma of healthy subjects and those with neurological deficits are reported.
One‐Pot Conversion of Cephalosporin C to 7‐Aminocephalosporanic Acid in the Absence of Hydrogen Peroxide (2005)

Abstract The main drawback in the production of 7‐aminocephalosporanic acid (7‐ACA) at the industrial level is the inactivation of the enzymes implicated in the process due to the presence of hydrogen peroxide during the reaction. As an alternative, we have developed the conversion of cephalosporin C to 7‐ACA in a single reactor without the presence of hydrogen peroxide during the reaction, achieving more than 80% yield. In order to develop this process, D ‐amino acid oxidase (DAAO) was co‐immobilized with catalase (CAT), which is able to fully eliminate in situ the hydrogen peroxide formed by the neighbouring DAAO molecules. Thus, the product of the reaction is only α‐ketoadipyl‐7‐ACA. This system prevents the inactivation of the oxidase by hydrogen peroxide, solving the main problem of the enzymatic process. Moreover, we have found that α‐ketoadipyl‐7‐ACA is recognized as a substrate by glutaryl acylase (GAC) and hydrolyzed as long as glutaric acid is absent from the reaction medium (because it is able to inhibit the hydrolysis). The low stability of α‐ketoadipyl‐7‐ACA justifies the use of a single reactor, in which glutaryl acylase is already present when this substrate is generated. Thus, the whole process may (and must) be performed in a single step, and in the absence of hydrogen peroxide that could affect the stabilities of the involved enzymes.
Enediyne Biosynthesis and Self-Resistance: A Progress Report (1999)

The enediyne antitumor antibiotics are appreciated for their novel molecular architecture, remarkable biological activity, and fascinating mode of action, and many have spawned considerable interest as anticancer agents in the pharmaceutical industry. Of equal importance to these astonishing properties, the enediynes also offer a distinct opportunity to study the unparalleled biosyntheses of their unique molecular scaffolds and what promises to be unprecedented modes of self-resistance to highly reactive natural products. Elucidation of these aspects should unveil novel mechanistic enzymology and may provide access to the rational biosynthetic modification of enediyne structure for new drug leads, the construction of enediyne overproducing strains, and eventually lead to an enediyne combinatorial biosynthesis program. This article reviews the published enediyne biosynthetic labeling and blocked mutant studies and provides a brief account of efforts in the Shen laboratory to elucidate the route to C-1027 biosynthesis and efforts in the Thorson laboratory to elucidate the calicheamicin biosynthetic cascade.
Reduced complexity, high performance digital delta-sigma modulator for fractional-N frequency synthesis (2003)

This paper presents the design consideration of high order digital /spl Delta//spl Sigma/ modulators used as modulus controller for fractional-N frequency synthesizer. A third-order MASH structure (MASH 1-2) is designed and implemented which allows for the input to operate over 75% of the input adder capacity. The number of the output levels is reduced to two bits. The circuit was verified through simulation, ASIC implementation and exhibits high potential for a gigahertz range, low-power monolithic CMOS frequency synthesizer.