gebhart/patrepeval huggingface dataset:
N-[18F]fluoroacetyl-D-glucosamine: a potential agent for cancer diagnosis. (1990)

Positron labeled substrates such as sugars, amino acids, and nucleosides have been investigated for the in-vivo evaluation of biochemical processes in cancerous tissue. Hexosamines are obligatory structural components of many biologically important macromolecules, including membrane glycoproteins and mucopolysaccharide. We evaluated a new synthesized pharmaceutical, N-[18F]fluoroacetyl-D-glucosamine (18F-FAG), which is a structural analog of N-acetyl-D-glucosamine. C3H/HeMsNRS mice bearing spontaneous hepatomas were used for the tissue distribution study. At 60 min after injection, high uptakes were found in tumor (5.16, mean value of %dose/g), liver (3.71), and kidney (3.27). The tumor uptake of 18F-FAG showed the highest value in all tissue. In the PET study, VX-2 carcinoma of the rabbit was clearly visualized. Our preliminary results suggest that 18F-FAG has potential as a new agent for tumor imaging.
KV-Direct (2017)

Performance of in-memory key-value store (KVS) continues to be of great importance as modern KVS goes beyond the traditional object-caching workload and becomes a key infrastructure to support distributed main-memory computation in data centers. Recent years have witnessed a rapid increase of network bandwidth in data centers, shifting the bottleneck of most KVS from the network to the CPU. RDMA-capable NIC partly alleviates the problem, but the primitives provided by RDMA abstraction are rather limited. Meanwhile, programmable NICs become available in data centers, enabling in-network processing. In this paper, we present KV-Direct, a high performance KVS that leverages programmable NIC to extend RDMA primitives and enable remote direct key-value access to the main host memory.
<i>Lactobacillus reuteri</i>CRL 1098 prevents side effects produced by a nutritional vitamin B<sub>12</sub>deficiency (2009)

The ability of L. reuteri CRL1098 to prevent a nutritional vitamin deficiency was demonstrated for the first time. The addition of a GRAS micro-organism to complement the B(12) content in deficient foods is an interesting biotechnological alternative.
Raman spectroscopy of proteins: a review (2013)

In this work, 26 proteins of different structure, function and properties are investigated by Raman spectroscopy with 488, 532 and 1064 nm laser lines. The excitation lines were chosen in NIR and Vis range as the most common and to show the difference due to normal and resonance effect, sometimes accompanied by the fluorescence. The selected proteins were divided, according to the Structural Classification of Proteins, into four classes according to their secondary structure, i.e. α‐helical (α), β‐sheet (β), mixed structures (α/β, α + β, s) and others. For all compounds, FT‐Raman and two Vis spectra are presented along with the detailed band assignment. To the best of our knowledge, this is the first review showing the potential of Raman spectroscopy for the measurement and analysis of such a large collection of individual proteins. This work can serve as a comprehensive vibrational spectra library, based on our and previous Raman measurements. Copyright © 2013 John Wiley & Sons, Ltd.
LTE enhancements for public safety and security communications to support group multimedia communications (2016)

Currently public safety and security communication systems depend on reliable and secure PMR networks that are mainly devoted to provide voice services. However, the evolutionary trend for professional mobile radio (PMR) networks is toward the provision of new value-added multimedia services such as video streaming, in order to improve situational awareness and enhance life-saving operations. The challenge here is to exploit the future commercial broadband networks to deliver voice and multimedia services satisfying PMR service requirements. In particular, a viable solution now seems to be the adaption of the new Long Term Evolution technology to provide IP-based broadband services with the security and reliability typical of PMR networks. This article outlines different alternatives to achieve this goal and, in particular, proposes a proper solution for providing multimedia services with PMR standards over commercial LTE networks.
Delayed Cutaneous Hypersensitivity Reaction to Carcinoembryonic Antigen in Cancer Patients (1982)

The delayed cutaneous hypersensitivity reaction to carcinoembryonic antigen (CEA) was tested in 84 patients with different diseases including large bowel adenocarcinoma and breast carcinoma, with or without metastasis, liver cirrhosis and inflammatory or degenerative diseases. Positive skin test to CEA was observed in a small proportion (11%) of the patients tested. No difference in positive skin test reactions was observed in the 6 different groups of patients. Similar delayed cutaneous hypersensitivity reactions were found to various amount of CEA ranging from 0.5 to 25 micrograms. No correlation was seen between the results of skin test and blood CEA levels.
WALKING ON WATER: Biolocomotion at the Interface (2005)

We consider the hydrodynamics of creatures capable of sustaining themselves on the water surface by means other than flotation. Particular attention is given to classifying water walkers according to their principal means of weight support and lateral propulsion. The various propulsion mechanisms are rationalized through consideration of energetics, hydrodynamic forces applied, or momentum transferred by the driving stroke. We review previous research in this area and suggest directions for future work. Special attention is given to introductory discussions of problems not previously treated in the fluid mechanics literature, with hopes of attracting physicists, applied mathematicians, and engineers to this relatively unexplored area of fluid mechanics.
Multiplex PCR Amplimer Conformation Analysis for Rapid Detection of <i>gyrA</i> Mutations in Fluoroquinolone-Resistant <i>Mycobacterium tuberculosis</i> Clinical Isolates (2004)

A new strategy known as multiplex PCR amplimer conformation was developed for detection of mutation in the gyrA gene of 138 clinical isolates of Mycobacterium tuberculosis. The method generated a single-stranded and heteroduplex DNA banding pattern of multiplex PCR amplimers of the region of interest that was extremely sensitive to specific mutations, thus enabling much more sensitive and reliable mutation analysis compared to the standard single-stranded conformation polymorphism technique. The genetic profiles of the gyrA gene of the 138 isolates as detected by MPAC were confirmed by nucleotide sequencing and were found to correlate strongly with the in vitro susceptibilities of the mutant strains to six fluoroquinolones (ofloxacin, levofloxacin, sparfloxacin, moxifloxacin, gatifloxacin, and sitafloxacin). All 32 isolates that contained gyrA mutations exhibited cross-resistance to the six fluoroquinolones (ofloxacin MIC for 90% of strains > 16 mg/liter), although moxifloxacin, gatifloxacin, and sitafloxacin (MIC for 90% of strains </= 4 mg/liter) were apparently more active than ofloxacin, levofloxacin, and sparfloxacin (MIC for 90% of strains >/==" BORDER="0"> 16 mg/liter). All gyrA mutations were clustered in codons 90, 91, and 94, and aspartic acid 94 was most frequently mutated. Twenty-three isolates without gyrA mutations were also found to exhibit reduced susceptibility to ofloxacin (MIC for 90% of strains = 4 mg/liter), but largely remained susceptible to other drugs (MIC for 90% of strains </= 1 mg/liter). Another 83 isolates without mutations were fully susceptible to all six fluoroquinolones (ofloxacin MIC for 90% of strains = 1 mg/liter). In conclusion, high-level phenotypic resistance to fluoroquinolones among M. tuberculosis clinical isolates, which appears to be predominantly due to gyrA mutations, may be readily detected by genotyping techniques such as multiplex PCR amplimer conformation.
A fast hierarchical algorithm for three-dimensional capacitance extraction (2002)

The authors present a new algorithm for computing the capacitance of three-dimensional electrical conductors of complex structures. The new algorithm is significantly faster and uses much less memory than previous best algorithms and is kernel independent. The new algorithm is based on a hierarchical algorithm for the n-body problem and is an acceleration of the boundary element method (BEM) for solving the integral equation associated with the capacitance extraction problem. The algorithm first adaptively subdivides the conductor surfaces into panels according to an estimation of the potential coefficients and a user-supplied error bound. The algorithm stores the potential coefficient matrix in a hierarchical data structure of size O(n), although the matrix is size n/sup 2/ if expanded explicitly, where n is the number of panels. The hierarchical data structure allows the multiplication of the coefficient matrix with any vector in O (n) time. Finally, a generalized minimal residual algorithm is used to solve m linear systems each of size n /spl times/ n in O(mn) time, where m is the number of conductors. The new algorithm is implemented and the performance is compared with previous best algorithms for the k /spl times/ k bus example. The new algorithm is 60 times faster than FastCap and uses 1/80 of the memory used by FastCap. The results computed by the new algorithm are within 2.5% from that computed by FastCap. The new algorithm is 5 to 150 times faster than the commercial software QuickCap with the same accuracy.
Influence of Sputtering Parameters on the Formation Process of High-Quality and Low-Resistivity HfN Thin Film (1999)

We have investigated the influence of sputtering parameters such as N 2 flow ratio, applied dc power and substrate temperature on the formation process of high-quality and low-resistivity HfN film using an ultrahigh-vacuum sputtering system. The obtained film quality was evaluated using X-ray diffraction, X-ray photoelectron spectroscopy and Auger electron spectroscopy analyses. The resistivity values were measured by a four-point probe method. We found that (111) HfN and (100) HfN films with equivalent resistivity to the bulk value can be grown in a single-oriented state at the substrate temperature of 450°C on (111) Si and (001) Si, respectively. Therefore, it is revealed that impurity-free, high-quality HfN film with high crystallinity and low resistivity can be obtained at relatively low substrate temperatures, if appropriate sputtering conditions are satisfied, using an ultrahigh-vacuum sputtering system.
The <i>Saccharomyces cerevisiae</i> Weak-Acid-Inducible ABC Transporter Pdr12 Transports Fluorescein and Preservative Anions from the Cytosol by an Energy-Dependent Mechanism (1999)

Growth of Saccharomyces cerevisiae in the presence of the weak-acid preservative sorbic acid results in the induction of the ATP-binding cassette (ABC) transporter Pdr12 in the plasma membrane (P. Piper, Y. Mahe, S. Thompson, R. Pandjaitan, C. Holyoak, R. Egner, M. Muhlbauer, P. Coote, and K. Kuchler, EMBO J. 17:4257-4265, 1998). Pdr12 appears to mediate resistance to water-soluble, monocarboxylic acids with chain lengths of from C(1) to C(7). Exposure to acids with aliphatic chain lengths greater than C(7) resulted in no observable sensitivity of Deltapdr12 mutant cells compared to the parent. Parent and Deltapdr12 mutant cells were grown in the presence of sorbic acid and subsequently loaded with fluorescein. Upon addition of an energy source in the form of glucose, parent cells immediately effluxed fluorescein from the cytosol into the surrounding medium. In contrast, under the same conditions, cells of the Deltapdr12 mutant were unable to efflux any of the dye. When both parent and Deltapdr12 mutant cells were grown without sorbic acid and subsequently loaded with fluorescein, upon the addition of glucose no efflux of fluorescein was detected from either strain. Thus, we have shown that Pdr12 catalyzes the energy-dependent extrusion of fluorescein from the cytosol. Lineweaver-Burk analysis revealed that sorbic and benzoic acids competitively inhibited ATP-dependent fluorescein efflux. Thus, these data provide strong evidence that sorbate and benzoate anions compete with fluorescein for a putative monocarboxylate binding site on the Pdr12 transporter.
Nosocomial spread of cephem-resistant Escherichia coli strains carrying multiple Toho-1-like beta-lactamase genes (1997)

Escherichia coli HKY56, which demonstrated resistance to various beta-lactams except carbapenems, was isolated from the throat swab of an inpatient in 1994. Conjugal transfer of cephem resistance from HKY56 to E. coli CSH2 was not successful. Three cefotaxime-resistant E. coli clones harboring plasmid pMRE001, pMRE002, or pMRE003, each of which carried a 3.4-, 5.8-, or 6.2-kb EcoRI fragment insert, respectively, were obtained from HKY56. Although restriction analysis suggested their different origins, these clones showed similar profiles of resistance to various beta-lactams. The sequence of 10 amino acid residues at the N terminus of beta-lactamase purified from E. coli HB101(pMRE001) was identical to that of Toho-1. This Toho-1-like beta-lactamase-1 (TLB-1) was able to hydrolyze cefoperazone and cefotaxime efficiently, but it failed to hydrolyze cephamycins. A Toho-1-specific DNA probe was hybridized with three distinct EcoRI fragments derived from the chromosomal DNA of strain HKY56, and these fragments corresponded to DNA inserts carried by pMRE001, pMRE002, and pMRE003, respectively. PCR and Southern hybridization analysis suggested that all six cephem-resistant E. coli strains, strains HKY273, HKY285, HKY288, HKY305, HKY316, and HKY335, which were isolated in 1996 at the same hospital where strain HKY56 had been isolated, also possessed multiple Toho-1-like beta-lactamase (TLB) genes, and the hybridization patterns obtained with the Toho-1-specific probe were quite similar among these six isolates. The DNA fingerprinting patterns observed by pulsed-field gel electrophoresis revealed that among the E. coli isolates tested, all isolates except HKY56 possessed a similar genetic background. These findings suggested that E. coli strains that carry chromosomally multiplied TLB genes may have been proliferating and transmitted among patients in the same hospital.
Accelerated neurodegeneration through chaperone-mediated oligomerization of tau (2013)

Aggregation of tau protein in the brain is associated with a class of neurodegenerative diseases known as tauopathies. FK506 binding protein 51 kDa (FKBP51, encoded by FKBP5) forms a mature chaperone complex with Hsp90 that prevents tau degradation. In this study, we have shown that tau levels are reduced throughout the brains of Fkbp5-/- mice. Recombinant FKBP51 and Hsp90 synergized to block tau clearance through the proteasome, resulting in tau oligomerization. Overexpression of FKBP51 in a tau transgenic mouse model revealed that FKBP51 preserved the species of tau that have been linked to Alzheimer's disease (AD) pathogenesis, blocked amyloid formation, and decreased tangle load in the brain. Alterations in tau turnover and aggregate structure corresponded with enhanced neurotoxicity in mice. In human brains, FKBP51 levels increased relative to age and AD, corresponding with demethylation of the regulatory regions in the FKBP5 gene. We also found that higher FKBP51 levels were associated with AD progression. Our data support a model in which age-associated increases in FKBP51 levels and its interaction with Hsp90 promote neurotoxic tau accumulation. Strategies aimed at attenuating FKBP51 levels or its interaction with Hsp90 have the potential to be therapeutically relevant for AD and other tauopathies.
Field assisted self‐assembly for preferential through thickness (“z‐direction”) alignment of particles and phases by electric, magnetic, and thermal fields using a novel roll‐to‐roll processing line (2014)

Many functional films including heat spreaders, ultrahigh density information storage systems, capacitors, batteries, and fuel cell membranes require enhanced through thickness properties. In this paper, we describe a design and demonstration of a multipurpose novel film formation process to orient and align functional nanoparticles and polymer phases using external electric, magnetic, and thermal gradient fields. This roll‐to‐roll processing line uses a casting system that deposits liquid film of a monomer and/or polymer solution on to a flexible substrate. Substrate is carried by belt through an electric field zone that can apply DC, AC, or a biased AC to orient the phases and particles in the vertical direction while subjecting it to UV through its built in transparent conductive carrier. To orient magnetic particles, an electromagnet located along the machine may be used. The final tool that is built on this machine is the thermal alignment zone which is designed to apply a “ line of heat ” oriented transverse to the machine direction at nine different zones. Using this processing line, we are able to reduce the cost of manufacturing by limiting the amount of functional fillers through directional alignment while enhancing the thickness properties. POLYM. ENG. SCI., 55:34–46, 2015. © 2014 Society of Plastics Engineers
Extensive liver metastasis from human colon cancer in nude and scid mice after orthotopic onplantation of histologically-intact human colon carcinoma tissue. (1992)

Clinically-relevant animal models of human cancer are greatly needed for the study of human cancer biology and the development of new cancer therapeutics and diagnostics. We report here that by orthotopically transplanting histologically-intact human colon cancer to the colon of the immunodeficient nude and scid mouse mutants that extensive local growth and liver metastases occur consistently even after extensive in vivo orthotopic passage. We demonstrate that the liver metastases arise by hematogenous spread. The models described in this report for human colon cancer should prove useful for individual cancer patients as well as for basic and applied studies to develop improved treatment.
Age and sex distribution of patients with colorectal cancer (1989)

A retrospective review of 922 colorectal cancer patients was undertaken to determine whether the nonuniform anatomic distribution of colorectal cancer was influenced by age and/or sex. The mean age of patients with right colon lesions (71.2 years) was significantly higher than for either patients with left colon lesions (68.2 years) or rectal lesions (65.6 years). Further analysis disclosed that patients with proximal tumors were older than patients with distal tumors primarily because of the later presentation of females with cecal or ascending colon cancers. Comparison of the anatomic distribution of tumors in patient groups above and below the age of 70 revealed that right colon cancers accounted for a greater percentage of colorectal tumors in the older patient group than in the younger patient group. These findings support the roles played by both age and sex in influencing colorectal cancer location. Furthermore, these data provide a plausible explanation for the increasing incidence of proximal colonic lesions.
Optimum and heuristic transformation techniques for simultaneous optimization of latency and throughput (1995)

Although throughput alone can be arbitrarily improved for several classes of systems using previously published techniques, none of those approaches are effective when latency constraints, which are increasingly important in embedded DSP systems, are considered. After formally establishing the relationship between latency and throughput in general computation, we explore the effect of pipelining on latency, and establish necessary and sufficient conditions under which pipelining does not alter latency. Many systems are either linear, or have subsystems that are linear. For such cases we have used a state-space based approach that treats various transformations in an integrated fashion, and answers analytically whether it is possible to simultaneously meet any given combination of constraints on latency and throughput, The analytic approach is constructive in nature, and produces a complete implementation when feasibility conditions are fulfilled. We also present a suboptimal but hardware efficient heuristic approach for the special case of initially-relaxed single-input single-output linear time-invariant computations. A novel software platform consisting of a high-level synthesis system coupled to a symbolic algebra system was used to implement the proposed algorithm transformations. Instead of optimizing to improve throughput and latency, our transformations can also be used to increase the implementation efficiency while achieving the same latency and throughput as the original design.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Stereocomplexed Materials Based on Poly(3-hexylthiophene)-<i>b</i>-poly(lactide) Block Copolymers: Synthesis by Organic Catalysis, Thermal Properties, and Microscopic Morphology (2010)

A new approach to control the supramolecular organization of conjugated polymers is proposed, based on stereocomplex formation. It is illustrated by mixing polymer solutions of block copolymers, i.e., poly(3-hexylthiophene)-b-poly(l-lactide) and poly(3-hexylthiophene)-b-poly(d-lactide). The block copolymers were successfully synthesized via a three-step procedure including the use of metal-free organic catalysts in the ring-opening polymerization of l- and d-lactide. The thermal properties and microscopic morphology of sterecomplexed diblock copolymers show that the stereocomplexation of the polylactide blocks is able to prevent the crystallization of the regioregular poly(3-hexylthiophene) block into long-range ordered parallel fibrillar structures. Stereocomplexation is also observed when mixing poly(d-lactide) homopolymer and poly(3-hexylthiophene)-b-poly(l-lactide) block copolymer.
Determination of Gentamicins C1, C1a, and C2 in Plasma and Urine by HPLC (2000)

The method was repeatable and enabled the analysis of gentamicins C(1), C(1a), and C(2) in plasma and urine in concentrations covering the therapeutic range of the drug, thus being suitable for therapeutic drug monitoring and pharmacokinetic studies.
Adriamycin-induced myocardial dysfunction in vitro is mediated by free radicals (1991)

The role of free radicals in adriamycin (Adr)-induced acute myocardial changes was examined by using different antioxidants. Exposure of papillary muscles to Adr (100 microM) in a tissue bath for 60 min reduced developed force by 42%, increased lipid peroxidation by 200%, and resulted in characteristic ultrastructural changes. Catalase (4 x 10(4) U/l), an enzyme effective in the hydrolysis of hydrogen peroxide (H2O2), was more effective in maintaining the developed force than mannitol (20 mM), a hydroxyl radical scavenger. A small protection of developed force seen with superoxide dismutase (1.2 x 10(5) U/l), a quencher of superoxide radical, was evident for the first 15 min only. Only catalase and mannitol showed significant protection against Adr-induced increase in lipid peroxidation. Ultrastructural changes due to Adr alone included mitochondrial swelling, intramitochondrial granules, vacuolization, and disruption of sarcomeres. All of these changes were reduced in the presence of both catalase and mannitol, whereas superoxide dismutase was without any effect. Complete structural or functional protection was not seen with any of the antioxidants used in the study. Although both H2O2 and hydroxyl radical appear to be involved in Adr-induced deleterious effects, data on developed force also indicate that H2O2 may have a major role in mediating the acute effects of Adr in vitro.