gebhart/patrepeval huggingface dataset:
A conservative amino acid substitution, arginine for lysine, abolishes export of a hybrid protein in Escherichia coli (1989)

A hybrid protein that comprises the beta-lactamase signal peptide fused precisely to chicken muscle triosephosphate isomerase is not secreted into the periplasm of Escherichia coli. The protein can be secreted, however, if an arginine residue at position 3 of the isomerase is replaced by either a serine or a proline residue. In contrast, replacement of a neighboring lysine residue has no effect on secretion of the protein. Furthermore, if the arginine is removed from position 3 to generate a secreted protein, but is then reintroduced in place of the neighboring lysine, the blockade to secretion is re-established. The singular effect of the arginine residue on secretion does not result from the role this residue plays in the formation or stabilization of the native isomerase structure: mutational alterations remote from the N terminus of the isomerase that prevent the proper folding of the protein do not relieve the block to secretion. The finding that an arginine residue prevents secretion while a lysine residue does not, suggests that basic residues near the mature N terminus of a secreted protein must be deprotonated if orderly export is to occur. This implies that the signal peptide along with the N-terminal portion of the mature protein partitions directly into the lipid bilayer in the course of the secretory process.
The apple is ripe, but the connection gives us the pip! (2001)

In many small remote Western Australian communities the local school has the best connection to the Internet and is the logical location for a tertiary distance eduction student to go in order to undertake an online unit. The results obtained so far have indicated that while technically the schools have Internet access in reality it is too tenuous and slow to be useable for much beyond simple email.
Expression of the adult intestinal stem cell marker Lgr5 in the metastatic cascade of colorectal cancer. (2011)

The recently advanced cancer stem cell model postulates that progression and metastasis of cancer are mainly driven by tumor cells with stem cell properties. Intestinal cancer stem cells are difficult to study due to the lack of reliable markers, but expression of the Wnt target gene Lgr5 is promising to define at least stem cell like cells in intestinal and colorectal cancer. The aim of this study was to find a possible link of stem cell like cancer cells to the metastatic process of colorectal cancer. To this end, we evaluated immunohistochemical Lgr5 expression in 31 distant metastases and in primary tumor compartments with relevance for metastasizing, comprising 89 colorectal carcinomas. Lgr5 expression was seen in 51.6% of distant metastases. 12.9%, 14.8% and 26.7% of primary tumors with histologically confirmed tumor buds, angioinvasion and perineural infiltrates, respectively, showed evidence of Lgr5 expression in these tumor compartments. However, distant metastases, which were derived from carcinomas with such Lgr5 positive tumor compartments, showed 6- to 11.5-fold higher median value of Lgr5 expression compared to those metastases derived from tumors without Lgr5 expressing cells in these compartments. These differences between the metastases were statistically significant, if being related to tumor buds (all tumors; p = 0.047) and to vascular infiltrates (stage IV tumors; p = 0.007). In conclusion, our results point to rare evidence of Lgr5 positive stem cell like cells in the metastatic cascade of colorectal cancer, but these few cells might be biologically powerful in the metastatic process of cancer subsets. Clonal analysis is necessary to proof this hypothesis.
Microcavity terahertz quantum-cascade laser (2005)

We report the realization of microdisk and microring quantum-cascade lasers (QCLs) emitting in the terahertz (THz) region between 3.0 THz and 3.8 THz. The GaAs/Al<sub>0.15</sub>Ga<sub>0.85</sub>As heterostructure is based on longitudinal-optical phonon scattering for depopulation of the lower radiative state. A double metal waveguide is used to confine the whispering gallery modes in the gain medium. The threshold current density is 900 A/cm<sup>2</sup> at 5 K. Lasing takes place in pulsed-mode operation up to a heat-sink temperature of 140 K. Finite-Difference Time-Domaine (FDTD) simulations were performed in a strong field limit to obtain the field distribution within a microdisk THz QCL resonator.
Outcome of older patients with acute myeloid leukemia (2013)

This analysis of a large data set demonstrated that, although overall survival remained unsatisfactory among older patients, it improved in the younger old (ages 65-74 years). Survival of older old AML patients has not been favorably impacted by available AML therapies or supportive care, and intervention in this age group is best undertaken on a clinical trial.
Pros and cons of green InGaN laser on <i>c</i>‐plane GaN (2010)

Abstract The challenges of green InGaN lasers are discussed concerning material quality as a function of InGaN composition, quantum well design and piezoelectrical fields. Investigations of polar quantum well designs and comparison with simulated non‐polar structures demonstrate that the quality of the indium rich layers is more important than the influence of interface charges. A high risk of dark spots at high In concentrations of 26–33% is observed. Small changes of about 2% of In significant reduce or increase the quantity and size of dark luminescence areas. Polar designs are a trade‐off between low indium concentrations of 4 nm wide quantum wells and high overlap of electrons and holes in 2 nm narrow designs. Furthermore, our single quantum wells have less non‐radiative defects than indium rich multi‐quantum well structures. Optimized active layer designs and the material qualities enable us to get green InGaN lasers on c ‐plane substrates for cw operation at 515–524 nm and wall plug efficiencies of 3.9–2.3%. Slope efficiency of 0.3–0.4 W/A allows up to now highest optical output power of 50 mW.
Interaction of the human immunodeficiency virus type 1 Rev protein with a structured region in env mRNA is dependent on multimer formation mediated through a basic stretch of amino acids. (1990)

Interaction of the human immunodeficiency virus type 1 (HIV-1) Rev protein with a structured region within env mRNA (termed RRE) mediates the export of virus structural mRNAs from the nucleus to the cytoplasm. We show that the region encompassing the basic stretch of amino acids is essential for the ability of Rev to bind to RRE RNA and function in vivo. By use of a functional truncated Rev protein in conjunction with authentic Rev, effects on gel mobilities of the Rev-RRE RNA complex attributable to multimerization of Rev protein were observed. Rev proteins, unable to multimerize, failed to bind RRE RNA. Identification of Rev mutants capable of forming multimers, but unable to bind RRE RNA, suggests that the multimerization and RNA-binding domains can be distinguished and that multimerization is likely a prerequisite for formation of the RRE RNA-binding site. A mutant Rev protein, shown previously to function as a trans-dominant inhibitor of Rev function, bound to RRE RNA as a multimer to a similar extent as wild-type Rev. This observation is consistent with the hypothesis that regulation of HIV gene expression by Rev involves the interaction with cellular factors and that the trans-dominant Rev is probably defective in this function.
Evaluation of spectrometric parameters in spectral-domain optical coherence tomography (2011)

The parameters of the spectrometer were analyzed in order to optimize the performance of spectral-domain optical coherence tomography (SD-OCT). Because probing depth is proportional to spectral resolution, it can be increased with the choice of a higher resolution spectrometer, which implies greater pixel numbers and lower imaging speed, or by sacrificing part of the spectrum, which compromises the axial resolution and side lobes. With a dynamic range of 8 bits or more, the signal-to-noise ratio remains constant for different noise levels. The results were verified experimentally with in vivo retinal SD-OCT imaging.
Beneficial Effects of Ceftriaxone Against Pentylenetetrazole-Evoked Convulsions (2008)

Although considered to be generally safe, a number of beta-lactam antibiotics have been associated with epileptic seizures in humans. Furthermore, some beta-lactam antibiotics, including ceftriaxone, are used to evoke convulsions under experimental conditions. Recently it was demonstrated that ceftriaxone increased expression of the glutamate transporter (GLT1) and its biochemical and functional activity in the brain of rodents. GLT1 regulates extracellular concentrations of glutamate, an excitatory amino acid involved in the pathogenesis of seizures and epilepsy. Because of its rapid transfer of glutamate into neurons and adjacent glial cells, GLT1 diminishes glutamate toxicity. We investigated whether ceftriaxone (200 mg/kg body wt) administered intraperitoneally (ip) for 6 days could modify the convulsant effects of pentylenetetrazole (PTZ, 100 mg/kg ip) in inbred male BALBcAnNCR and C57 black (BL)/6 mice aged 4 and 12 weeks. Ceftriaxone pretreatment provided significant protective effects against PTZ-evoked generalized clonic convulsions (GCCs), generalized clonic-tonic convulsions (GCTCs), and convulsion-induced mortality during a period of 30 mins after PTZ administration. The incidence of GCCs, GCTCs, and death was statistically significantly lower for BALBcAnNCR mice of both ages, particularly younger mice. The latency time for each of the three parameters was significantly greater, with the exception of GCCs in adult mice. Protective effects of ceftriaxone were also noticed in adult C57BL/6 mice but not in prepubertal C57BL/6 mice. This is the first demonstration of anticonvulsant effects of ceftriaxone or any other beta-lactam antibiotic, which are not uniform across the mouse population. Our results provide new insight into the effects of ceftriaxone, which need further investigation.
Novel high-brightness fiber coupled diode laser device (2007)

High brightness becomes more and more important in diode laser applications for fiber laser pumping and materials processing. For OEM customers fiber coupled devices have great advantages over direct beam modules: the fiber exit is a standardized interface, beam guiding is easy with nearly unlimited flexibility. In addition to the transport function the fiber serves as homogenizer: the beam profile of the laser radiation emitted from a fiber is symmetrical with highly repeatable beam quality and pointing stability. However, efficient fiber coupling requires an adaption of the slow-axis beam quality to the fiber requirements. Diode laser systems based on standard 10mm bars usually employ beam transformation systems to rearrange the highly asymmetrical beam of the laser bar or laser stack. These beam transformation systems (prism arrays, lens arrays, fiber bundles etc.) are expensive and become inefficient with increasing complexity. This is especially true for high power devices with small fiber diameters. On the other hand, systems based on single emitters are claimed to have good potential in cost reduction. Brightness of the inevitable fiber bundles, though, is limited due to inherent fill-factor losses. At DILAS a novel diode laser device has been developed combining the advantages of diode bars and single emitters: high brightness at high reliability with single emitter cost structure. Heart of the device is a specially tailored laser bar (T-Bar), which epitaxial and lateral structure was designed such that only standard fast- and slow-axis collimator lenses are required to couple the beam into a 200&mgr;m fiber. Up to 30 of these T-Bars of one wavelength can be combined to reach a total of > 500W ex fiber in the first step. Going to a power level of today's single emitter diodes even 1kW ex 200&mgr;m fiber can be expected.
Strategies for the Development of Conotoxins as New Therapeutic Leads (2013)

Peptide toxins typically bind to their target ion channels or receptors with high potency and selectivity, making them attractive leads for therapeutic development. In some cases the native peptide as it is found in the venom from which it originates can be used directly, but in many instances it is desirable to truncate and/or stabilize the peptide to improve its therapeutic properties. A complementary strategy is to display the key residues that make up the pharmacophore of the peptide toxin on a non-peptidic scaffold, thereby creating a peptidomimetic. This review exemplifies these approaches with peptide toxins from marine organisms, with a particular focus on conotoxins.
Neural network methods with traffic descriptor compression for call admission control (2002)

We present and evaluate new techniques for call admission control (in ATM networks) based on neural networks. The methods are applicable to very general models that allow heterogeneous traffic sources and finite buffers. A feedforward neural network (NN) is used to predict whether or not accepting a requested new call would result in a feasible aggregate scream, i.e., one that satisfies the QOS requirements. The NN input vector is a traffic descriptor for the aggregate stream that has the following beneficial properties: its dimension is independent of the number of traffic classes; and it is additive, allowing it to be updated efficiently by simply adding the traffic descriptor of the new call. A novel asymmetric error function for the NN helps achieve our asymmetric objective in which rejecting an infeasible stream is more important than accepting a feasible one. We present a NN design that provides an optimal linear compression of the NN inputs to a smaller number of traffic parameters. The special case of one compressed parameter corresponds to an NN version of the equivalent bandwidth. Experiments show our methods to be better than methods based on the equivalent bandwidth, with respect to call blocking probability and the percentage of feasible streams that an correctly classified.
The operating microscope. II. Individual parts, handling, assembling, focusing, and balancing (1980)

The major components of the Zeiss OPMI 1, OPMI 6-S, and OPMI 7 P/H are discussed along with details on handling and assembling the components, changing couplings, focusing, and balancing the microscope system prior to use.
Per-operative Uncontrollable Bleeding at Polyester (Dacron<sup>R</sup>) Arterial Prosthesis Implantation (1987)

An aortobifemoral knitted polyester graft was placed in a 58-year-old woman with aorto-iliac occlusive disease. Although the prosthesis was preclotted in the usual manner, it never became impervious to blood under normal intra-arterial pressure. Examination of the graft showed lipid infiltration not ordinarily seen. We recommend that when a knitted prosthesis fails to preclot a woven graft should be used instead.
Fabrication of metallic microstructures by electroplating using deep-etched silicon molds (1995)

A new technology is presented here to fabricate three-dimensional micromachined metal structures. The microstructures are manufactured by electroplating in deep-etched silicon structures followed by a separation from their mold. Up to 140-/spl mu/m-deep silicon structures with vertical sidewalls are realized by an anisotropic plasma etching process producing the mold for electroplating. An etching gas mixture of SF/sub 6s/ and CBrF/sub 3/ is used to achieve both an anisotropic etching behavior by protective film formation of CF/sub 2/-radicals and high etching rates. The anisotropy is due to photoresist masking, which enhances the polymer formation. The vertical trenches are electroplated from the trench base filling the structures uniformly to the substrate surface. By avoiding overplating across the whole substrate the resulting structures are suitable for micromechanical devices. If needed, released microstructures from the silicon mold can be obtained by direct lift-off.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Research identifies designs for lowering subsea production cost (1993)

Our study provided a culture-specific perspective of users towards real-time video counseling. It identified users' opinions on the easiness and usefulness of the service. Those could provide clues for future improvement and development of using real-time video counseling in healthcare services.
StorVi (Story Visualization): A Text-to-Image Conversion (2014)

Natural language is an easy and effective medium for describing visual ideas and mental images.thus, we forecast the appearance of language-based 2D scene generation systems to let ordinary users fast create 2D scenes without having to learn special software, obtain imaginative skills, or even touch a desktop window-oriented interface.This research presented by the researchers entitled "StorVi (story visualization): a text-to-image conversion", is a system that can visualize stories of multiple framing in pictures.the system focus on fable stories for children ages 4-7 yrs.old.Recognizing the characters and partitioning of frames are the general problems of the study.In solving the two general problems, the researchers used classification algorithm/simple co-reference resolution algorithm an algorithm for recognizing the characters and used the rule to partition the frames by sentence with character/s for the partitioning of frames.
An experimental study of tone excited heated jets (1984)

The objective of this investigation was to obtain detailed experimental data on the effects of upstream acoustic excitation on the mixing of heated jets with the surrounding air. Based on the information gathered in the literature survey, a technical approach was developed to carry out a systematic set of mean flowfield measurements for a broad range of jet operating and acoustic excitation conditions. Most of the results were obtained at Mach numbers of 0.3 and 0.8 and total temperatures of up to 800 K. Some measurements were made also for the fully expanded supersonic jet of Mj = 1.15. The maximum level of excitation was Le equal to or less than 150 dB and a range of excitation frequencies up to fe = 4 kHz was used. The important results derived from this study can be summarized as follows: (1) the sensitivity of heated jets to upstream acoustic excitation varies strongly with the jet operating conditions, (2) the threshold excitation level increases with increasing jet temperature, and (3) the preferred Strouhal number does not change significantly with a change of the jet operating conditions.
Bioluminescent Monitoring of In Vivo Colonization and Clearance Dynamics by Light-Emitting Bacteria (2009)

Bioluminescence is an excellent reporter system for analysing bacterial colonization and clearance dynamics in vivo. Many bacterial species have been rendered bioluminescent, allowing the sensitive detection of bacterial burden and metabolic activity in real-time and in situ in living animals. In this chapter we describe the protocols for characterizing in vivo infection models using bioluminescent bacteria: from real-time imaging in living animals by bioluminescence imaging (BLI) to ex vivo BLI of harvested organs and tissues and, finally, to quantification of bacterial numbers in organ and tissue homogenates by luminometry and viable counts. While the lux operon from Photorhabdus luminescens is ideally suited for use in such models, there may be times when alternative luciferases, such as those from the firefly (luc) or marine copepods (Gluc), may be more appropriate. Here we describe the protocols required to monitor colonization and clearance dynamics using bioluminescent bacteria that are lux-, luc-, or Gluc-positive.
Radiation Properties Enhancement of a GSM/WLAN Microstrip Antenna Using a Dual Band Circularly Symmetric EBG Substrate (2012)

This communication presents a dual band circular patch antenna with improved radiation properties at GSM and WLAN frequency bands, i.e., 1.8 and 2.4 GHz. The improvement has been achieved using a dual band circularly symmetric EBG (CS-EBG) structure. The structure has been simulated, fabricated and measured demonstrating notable enhancement in antenna radiation patterns at both frequency bands. Results show 5 dB and 7 dB improvement in front to back ratio at design frequencies of 1.8 GHz and 2.4 GHz respectively. In addition, measurement results demonstrate 0.8 dB increase in antenna gain and significant reduction in cross polarization level at both frequency bands.
Cholesterolosis Is Not Associated With High Cholesterol Levels in Patients With and Without Gallstone Disease (1997)

High levels of cholesterol have been associated with certain gallbladder disorders such as cholesterolosis and gallstone disease. Furthermore, obesity is considered the main risk factor for cholesterol gallstone disease. We investigated the incidence of cholesterolosis in patients with and patients without gallbladder stones (GS). We reviewed the clinical records of patients with gallstone disease and other gallbladder disorders who had consecutive cholecystectomy during a 5-year period. We recorded demographic data, sex, age, serum cholesterol levels, and body mass index. The diagnosis of cholesterolosis was made macroscopically and microscopically. A total of 636 patients were included in this study: 446 with and 190 without GS. Cholesterolosis was more frequent in patients without GS (p < 0.01). However, hypercholesterolemia occurred more frequently in patients with GS (p < 0.001). Obese patients with GS had higher percentages of cholesterolosis and hypercholesterolemia than did eutrophic patients (p < 0.01 and p < 0.05, respectively). We suggest that cholesterolosis in the human gallbladder is not necessarily associated with gallstone disease and high plasma cholesterol levels.
Micro-Analysis of Metals by Optical Emission Spectroscopy (1959)

The status of metallurgical micro-sampling and analysis is reviewed. Spectroscopic detectabilities for several metallic elements are found to be of the order of I × 10 −9 gram when employing a quartz Littrow spectrograph together with arc excitation and Eastman 103-O emulsion. Techniques are described for the removal and identification of milli-microgram quantities of metallic constituents by means of drills as small as 6 3 microns diameter.
A desorption mechanism of water following vacuum-ultraviolet irradiation on amorphous solid water at 90 K (2010)

Following 157 nm photoexcitation of amorphous solid water and polycrystalline water ice, photodesorbed water molecules (H(2)O and D(2)O), in the ground vibrational state, have been observed using resonance-enhanced multiphoton ionization detection methods. Time-of-flight and rotationally resolved spectra of the photodesorbed water molecules were measured, and the kinetic and internal energy distributions were obtained. The measured energy distributions are in good accord with those predicted by classical molecular dynamics calculations for the kick-out mechanism of a water molecule from the ice surface by a hot hydrogen (deuterium) atom formed by photodissociation of a neighboring water molecule. Desorption of D(2)O following 193 nm photoirradiation of a D(2)O/H(2)S mixed ice was also investigated to provide further direct evidence for the operation of a kick-out mechanism.