gebhart/patrepeval huggingface dataset:
Reduced Isotype Switching in Splenic B Cells from Mice Deficient in Mismatch Repair Enzymes (1999)

Mice deficient in various mismatch repair (MMR) enzymes were examined to determine whether this repair pathway is involved in antibody class switch recombination. Splenic B cells from mice deficient in Msh2, Mlh1, Pms2, or Mlh1 and Pms2 were stimulated in culture with lipopolysaccharide (LPS) to induce immunoglobulin (Ig)G2b and IgG3, LPS and interleukin (IL)-4 to induce IgG1, or LPS, anti-delta-dextran, IL-4, IL-5, and transforming growth factor (TGF)-beta1 to induce IgA. After 4 d in culture, cells were surface stained for IgM and non-IgM isotypes and analyzed by FACS((R)). B cells from MMR-deficient mice show a 35-75% reduction in isotype switching, depending on the isotype and on the particular MMR enzyme missing. IgG2b is the most affected, reduced by 75% in Mlh1-deficient animals. The switching defect is not due to a lack of maturation of the B cells, as purified IgM(+)IgD(+) B cells show the same reduction. MMR deficiency had no effect on cell proliferation, viability, or apoptosis, as detected by [(3)H]thymidine incorporation and by propidium iodide staining. The reduction in isotype switching was demonstrated to be at the level of DNA recombination by digestion-circularization polymerase chain reaction (DC-PCR). A model of the potential role for MMR enzymes in class switch recombination is presented.
MORPHOLOGICAL INTEGRATION BETWEEN DEVELOPMENTAL COMPARTMENTS IN THE DROSOPHILA WING (2000)

Developmental integration is the covariation among morphological structures due to connections between the developmental processes that built them. Here we use the methods of geometric morphometrics to study integration in the wing of Drosophila melanogaster. In particular, we focus on the hypothesis that the anterior and posterior wing compartments are separate developmental units that vary independently. We measured both variation among genetically diverse individuals and random differences between body sides of single individuals (fluctuating asymmetry, FA). For both of these sources of variation, the patterns of variation identified by principal component analyses all involved landmarks in both the anterior and posterior compartments simultaneously. Analyses focusing exclusively on the covariation between the anterior and posterior compartments, by the partial least-squares method, revealed pervasive integration of the two compartments, for both individual variation and FA. These analyses clearly indicate that the anterior and posterior compartments are not separate units of variation, but that the covariation between compartments is sufficient to account for nearly all the variation throughout the entire wing. We conclude that variation among individuals as well as the developmental perturbations responsible for FA generate shape variation primarily through developmental processes that are integrated across both compartments. In contrast, much less of the shape variation in our sample can be attributed to the localized processes that establish the identity of particular wing veins.Corresponding Editor: M. Zelditch
A broad-band CPW-fed strip-loaded square slot antenna (2003)

A novel broadband design of a coplanar waveguide fed square slot antenna loaded with conducting strips is proposed and experimentally studied. The obtained results show that the impedance bandwidth, determined by 10-dB return loss, of the proposed slot antenna can be greater than 60%. The design considerations for achieving broad-band operation of the proposed slot antenna are described, and experimental results are presented.
Real‐Time Measurement of Anchorage‐Dependent Cell Adhesion Using a Quartz Crystal Microbalance (1993)

An in situ technique based on the mass-sensitive piezoelectric quartz crystal microbalance (QCM) was applied to continuously monitor the attachment and detachment of anchorage-dependent mammalian cells on a metal surface. Specifically, we have demonstrated that the attachment of Vero cells to metal surfaces on the piezoelectrically active area of the QCM results in decreases in the QCM resonant frequency that can be monitored conveniently in real time. Lysis and detachment of Vero cells caused by vesicular stomatitis virus (VSV) infection can also be monitored readily. Our results demonstrate that the QCM is a viable technique for monitoring anchorage-dependent cell attachment and detachment on surfaces (caused by stimulatory, inhibitory, or cytopathic effects).
[Maca (Lepidium meyenii Walp), a review of its biological properties]. (2014)

Maca (Lepidium meyenii) is a plant that grows above 4000 altitude meters in Peru's Central Andes; it has different varieties according to the color of the hypocotyl. This review summarizes the results of studies about the effects of maca on sexual function, spermatogenesis, female reproductive function, memory, depression and anxiety, and energy as well as effects on benign prostatic hyperplasia, osteoporosis and metabolic syndrome. Its anti-aging effect is also discussed as well as safety in consumption. Differences have been shown between the effects of the black, yellow and red maca varieties. Black maca shows the best results on spermatogenesis, memory and fatigue, while red maca is the variety that reverses the benign prostatic hyperplasia and experimentally induced osteoporosis. In addition, maca reduces the glucose levels, and its consumption is related to the lowering of blood pressure and an improved health score. Experimental studies have proven that short and long term consumption don't show in vivo and in vitro toxicity. Although experimental studies have shown that maca has diverse beneficial effects, more clinical studies are needed to confirm these results.
Movement Artefacts in Range Images of Time-of-Flight Cameras (2007)

Modern time-of-flight measuring camera systems are able to provide accurate depth images but there are problems with regard to their usage in a dynamic environment due to their measurement principle. The Centre for Sensor Systems recently proposed a new 2D/3D camera avoiding this drawback by the monocular combination of a 2D and a 3D sensor. In this paper, the camera is presented and an approach for detecting erroneous depth values due to movement is made.
Structure of the BH Domain from Graf and Its Implications for Rho GTPase Recognition (2000)

Cellular signaling by small G-proteins is down-regulated by GTPase-activating proteins (GAPs), which increase the rate of GTP hydrolysis. The GTPase regulator associated with focal adhesion kinase (Graf) exhibits GAP activity toward the RhoA and Cdc42 GTPases, but is only weakly active toward the closely related Rac1. We determined the crystal structure of a 231-residue fragment of Graf (GrafGAP), a domain containing the GAP activity, at 2.4-A resolution. The structure clarifies the boundaries of the functional domain and yields insight to the mechanism of substrate recognition. Modeling its interaction with substrate suggested that a favorable interaction with Glu-95 of Cdc42 (Glu-97 of RhoA) would be absent with the corresponding Ala-95 of Rac1. Indeed, GrafGAP activity is diminished approximately 40-fold toward a Cdc42 E95A mutant, whereas a approximately 10-fold increase is observed for a Rac1 A95E mutant. The GrafGAP epitope that apparently interacts with Glu-95(Glu-97) contains Asn-225, which was recently found mutated in some myeloid leukemia patients. We conclude that position 95 of the GTPase is an important determinant for GrafGAP specificity in cellular function and tumor suppression.
Experimental and theoretical studies of Schiff bases as corrosion inhibitors (2018)

Inhibition efficiencies of 96 and 92% were achieved with BZ4 and BZ3, respectively, at the maximum tested concentration. Density functional theory calculations of BZ3 and BZ4 were performed to compare the effects of hydroxyl and N,N-dimethylamino substituents on the inhibition efficiency, providing insight for designing new molecular structures that exhibit enhanced inhibition efficiencies.
The rationale behind the success of multi-model ensembles in seasonal forecasting – II. Calibration and combination (2005)

The DEMETER multi-model ensemble system is used to investigate the enhancement in seasonal predictability that can be achieved by calibrating single-model ensembles and combining them to issue multi-model predictions. The forecast quality of both deterministic and probabilistic predictions is assessed and compared to the skill of a simple multi-model ensemble where all the single models are equally weighted. Both calibration and combination are carried out using crossvalidation. Single-model seasonal ensembles are calibrated using canonical correlation analysis for model adjustment and variance inflation for reliability enhancement. Results indicate that both model adjustment and inflation increase the skill of tropical predictions for single-model ensembles, provided that the training time series are long enough. Some improvements are also found for extratropical areas, although mostly due to an increase of reliability associated with the inflation. The beneficial impact of calibration is smaller for the simple multi-model than for the single-model ensembles due to the relatively high reliability of the former. The raw single-model predictions are also linearly combined using grid-point multiple linear regression to create an optimized multi-model system. Results indicate that the forecast quality of the simple multi-model ensemble is generally difficult to improve using multiple linear regression due to the lack of robustness of the regression coefficients. As in the case of the calibration, longer time series would be preferred to achieve a significant forecast quality improvement. Over the tropics, a multiple linear regression, that uses the principal components of the model anomalies for the target area as predictors indicates a substantial gain in skill even with the available sample size. The implications of these results in an operational context are discussed.
Endogenous interference in imunoassays in clinical chemistry. A rewiev (1990)

The increasing availability and use of immunoassays in clinical chemistry have revealed a number of endogeneous interferences. Solid-phase sandwich immunoassays based on monoclonal antibodies are particularly sensitive to any factor able to bridge immunoglobulins together. Heterophilic immunoglobulin antibodies have been demonstrated in up to 40% of patient samples and to cause spuriously elevated results unless certain precautions are taken. Rheumatoid factors belong to the same category, but their affinity is usually too low to cause significant interference. Immunoscintigraphy generates high-litre anti-immunoglobulin responses causing serious interferences in immunoassays. Recently interfering factors of unknown nature causing nonspecific binding of enzyme-labelled antibodies have been observed. Spuriously decreased values can be caused by complement, which may interfere with antigen-binding to solid phase antibody. The aforementioned and other endogeneous interferences in immunoassays are reviewed and methods for their elimination discussed.
Fluorescence resonance energy transfer imaging of PKC signalling in living cells using genetically encoded fluorescent probes (2008)

Perception of ligands in the extracellular space by transmembrane receptors initiates signal transduction. The conformation change of the receptor induces changes of intracellular signalling components, including altered cellular concentration, altered subcellular location, altered conformation and altered interacting partners. Biochemical approaches have yielded a lot of information about these processes. However, methods that are compatible with analysis of single living cells are often preferred, since cells are highly organized and their response is usually spatially heterogeneous. In addition, the study of signalling cascades requires high temporal resolution. Fluorescence imaging approaches meet these requirements. Moreover, imaging approaches can be combined with genetically encoded green fluorescent protein-based probes that have a high selectivity and sensitivity for the process/molecule of interest. Nowadays, many genetically encoded probes are available for visualizing signalling in living cells. This review is centred on a key regulator of cellular signalling, protein kinase C (PKC). We will discuss imaging approaches that are used for analysing the molecules involved in activation of PKC, visualizing the dynamics of the location of PKC, measuring the conformation of PKC and quantifying the activity of PKC. These approaches are of general interest since they can be applied to study the dynamics, conformation and activity of any protein in living cells.
Osteoid osteoma: the uniquely innervated bone tumor. (1998)

Osteoid osteomas are benign bone-forming tumors that despite their small size (<2.0 cm) characteristically produce severe nocturnal bone pain that is relieved by aspirin. This typical clinical presentation is virtually unique among bone tumors. Histologically, osteoid osteomas are circumscribed nodules of woven bone and osteoid with prominent osteoblastic rimming (the nidus), surrounded by thickened cortical and trabecular bone and loose fibrovascular tissue (the reactive zone). Prostaglandins mediate the pain of osteoid osteomas, but there have been few studies of their innervation. We investigated 34 osteoid osteomas using a streptavidin immunohistochemical technique and a panel of antibodies to neural and neural-associated antigens (phosphorylated neurofilament, neurofilament, and S-100 protein). Whenever possible, sections of the nidus and the reactive zone were stained. As controls, we stained other bone tumors that can be painful, including 10 osteoblastomas, 5 osteosarcomas, 6 giant cell tumors, 4 chondroblastomas, 3 aneurysmal bone cysts, and 6 cases of fibrous dysplasia. Twenty-five osteoid osteomas contained phosphorylated neurofilament-, neurofilament-, and/or S-100-positive nerve fibers in the reactive zone around the nidus and/or in the nidus. The nerve fibers were larger and more abundant in the reactive zone than in the nidus, and they were occasionally visible on hematoxylin- and eosin-stained slides on retrospective review. The smaller nerve fibers within the nidi were never identified, even after extensive review of those slides. In the nine cases in which nerve fibers were not identified, the sampled tissue consisted only of nidus. None of the control "bone tumors" contained detectable nerve fibers within their substance or in the adjacent peripheral bone. The nerve supply of osteoid osteoma seems unique among bone tumors, and it might serve as a marker in diagnostically difficult cases.
PARADOXICAL LEADERSHIP: <i>A Journey with John Tyson</i> (1994)

JOHN TYSON, vice president of Northern Telecom's Corporate Design Group (CDG), has been especially creative in translating the theory of cross‐functional development into reality Pursuing his vision, profiled here by Artemis March, CDG has become a center of excellence that “invests in” other corporate units as a partner. With a focus on accountability, value, and leadership, Tyson's group seeks out opportunities to leverage its talents as essential resources in defining the next generation of communications products.
Efficient Generation of Functional Epithelial and Epidermal Cells from Human Pluripotent Stem Cells Under Defined Conditions (2013)

Human pluripotent stem cells (hPSCs) have an unparalleled potential to generate limitless quantities of any somatic cell type. However, current methods for producing populations of various somatic cell types from hPSCs are generally not standardized and typically incorporate undefined cell culture components often resulting in variable differentiation efficiencies and poor reproducibility. To address this, we have developed a defined approach for generating epithelial progenitor and epidermal cells from hPSCs. In doing so, we have identified an optimal starting cell density to maximize yield and maintain high purity of K18+/p63+ simple epithelial progenitors. In addition, we have shown that the use of synthetic, defined substrates in lieu of Matrigel and gelatin can successfully facilitate efficient epithelial differentiation, maintaining a high (>75%) purity of K14+/p63+ keratinocyte progenitor cells and at a two to threefold higher yield than a previously reported undefined differentiation method. These K14+/p63+ cells also exhibited a higher expansion potential compared to cells generated using an undefined differentiation protocol and were able to terminally differentiate and recapitulate an epidermal tissue architecture in vitro. In summary, we have demonstrated the production of populations of functional epithelial and epidermal cells from multiple hPSC lines using a new, completely defined differentiation strategy.
Comparative oncogenomics identifies breast tumors enriched in functional tumor-initiating cells (2011)

The claudin-low subtype is a recently identified rare molecular subtype of human breast cancer that expresses low levels of tight and adherens junction genes and shows high expression of epithelial-to-mesenchymal transition (EMT) genes. These tumors are enriched in gene expression signatures derived from human tumor-initiating cells (TICs) and human mammary stem cells. Through cross-species analysis, we discovered mouse mammary tumors that have similar gene expression characteristics as human claudin-low tumors and were also enriched for the human TIC signature. Such claudin-low tumors were similarly rare but came from a number of distinct mouse models, including the p53 null transplant model. Here we present a molecular characterization of 50 p53 null mammary tumors compared with other mouse models and human breast tumor subtypes. Similar to human tumors, the murine p53 null tumors fell into multiple molecular subtypes, including two basal-like, a luminal, a claudin-low, and a subtype unique to this model. The claudin-low tumors also showed high gene expression of EMT inducers, low expression of the miR-200 family, and low to absent expression of both claudin 3 and E-cadherin. These murine subtypes also contained distinct genomic DNA copy number changes, some of which are similarly altered in their cognate human subtype counterpart. Finally, limiting dilution transplantation revealed that p53 null claudin-low tumors are highly enriched for TICs compared with the more common adenocarcinomas arising in the same model, thus providing a unique preclinical mouse model to investigate the therapeutic response of TICs.
Characterization of a low-frequency inductively coupled plasma source (1996)

A hemispherical inductively coupled plasma source is characterized with Langmuir probes, microwave interferometry, voltage, and current monitors, optical emission, and mass spectrometry. The plasma source is operated with up to 2 kW of 0.46 MHz rf power and with a 5 mTorr mixture of argon, oxygen, and hydrogen gases. The rf power is efficiently coupled to the plasma. The ion and neutral compositions show substantial dissociation and water vapor formation. Maps of ion density, electron temperature, and plasma potential are obtained that are consistent with diffusive particle transport and edge power deposition. The latter contributes to an excellent plasma radial uniformity near the bottom electrode.
The Basic Biology of PP2A in Hematologic Cells and Malignancies (2014)

Reversible protein phosphorylation plays a crucial role in regulating cell signaling. In normal cells, phosphoregulation is tightly controlled by a network of protein kinases counterbalanced by several protein phosphatases. Deregulation of this delicate balance is widely recognized as a central mechanism by which cells escape external and internal self-limiting signals, eventually resulting in malignant transformation. A large fraction of hematologic malignancies is characterized by constitutive or unrestrained activation of oncogenic kinases. This is in part achieved by activating mutations, chromosomal rearrangements, or constitutive activation of upstream kinase regulators, in part by inactivation of their anti-oncogenic phosphatase counterparts. Protein phosphatase 2A (PP2A) represents a large family of cellular serine/threonine phosphatases with suspected tumor suppressive functions. In this review, we highlight our current knowledge about the complex structure and biology of these phosphatases in hematologic cells, thereby providing the rationale behind their diverse signaling functions. Eventually, this basic knowledge is a key to truly understand the tumor suppressive role of PP2A in leukemogenesis and to allow further rational development of therapeutic strategies targeting PP2A.
Hydrogen Peroxide Production by Monoamine Oxidase during Ischemia-Reperfusion in the Rat Brain (1993)

Monoamine oxidase (MAO) as a source of hydrogen peroxide (H2O2) was evaluated during ischemia-reperfusion in vivo in the rat brain. H2O2 production was assessed with and without inhibition of MAO during and after 15 min of ischemia. Metabolism of H2O2 by catalase during ischemia and reperfusion was measured in forebrain homogenates using aminotriazole (ATZ), an irreversible H2O2-dependent inhibitor of catalase. Catecholamine and glutathione concentrations in forebrain were measured with and without MAO inhibitors. During ischemia, forebrain blood flow was reduced to 8% of baseline and H2O2 production decreased as measured at the microperoxisome. During reperfusion, a rapid increase in H2O2 generation occurred within 5 min as measured by a threefold increase in oxidized glutathione (GSSG). The H2O2-dependent rates of ATZ inactivation of catalase between control and ischemia-reperfusion were similar, indicating that H2O2 was more available to glutathione peroxidase than to catalase in this model. MAO inhibitors eliminated the biochemical indications of increased H2O2 production and increased the catecholamine concentrations. Mortality was 67% at 48 h after ischemia-reperfusion, and there was no improvement in survival after inhibition of MAO. We conclude that MAO is an important source of H2O2 generation early in brain reperfusion, but inhibition of the enzyme does not improve survival in this model despite ablating H2O2 production.
Formulation of Different Chitosan Hydrogels for Cartilage Tissue Repair (2014)

Biocompatibility analyses showed that formulated hydrogels were not toxic and didn’t induce apoptosis. Chondrocyte were alive but not proliferative, inflammation and immune responses were observed but under certain acceptability threshold. The results of this preliminary work suggest that the formulated Chitosan hydrogels are cyto-compatible and induce chondrocyte differentiation. The here tested synthesis process generated hydrogels, which are potentially useful for cartilage regenerative processes. Further mechanical characterizations are in progress.
[Money receipt, October 23, 1889] (1889)

Money receipt for three hundred and five dollars and eighty cents received from C. B. Moore and addressed to J. K. Dodd in Pauls Valley. The back of the document gives information on the services available from Wells, Fargo, and Company's Express.
Analysis of Reinfiltration in Fractured Porous Media (1992)

ABSTRACT A scaling of the two-phase, two-dimensional flow in an anisotropic matrix block is proposed. The scaling allows analysis of the reinfiltration process in a matrix block and the study of the influence of gravity, capillarity and matrix block dimensions on reinfiltration and drainage rates. An approximation for the maximum drainage rate of a matrix block without segregation assumption is also derived. The main conclusion of this paper is that the combination of gravity and capillarity forces generally provides conditions for a pronounced reinfiltration process in fractured porous media.