gebhart/patrepeval huggingface dataset:
Localized adherence by enteropathogenic Escherichia coli is an inducible phenotype associated with the expression of new outer membrane proteins. (1991)

Enteropathogenic Escherichia coli grow as discrete colonies on the mucous membranes of the small intestine. A similar pattern can be demonstrated in vitro; termed localized adherence (LA), it is characterized by the presence of circumscribed clusters of bacteria attached to the surfaces of cultured epithelial cells. The LA phenotype was studied using B171, an O111:NM enteropathogenic E. coli (EPEC) strain, and HEp-2 cell monolayers. LA could be detected 30-60 min after exposure of HEp-2 cells to B171. However, bacteria transferred from infected HEp-2 cells to fresh monolayers exhibited LA within 15 min, indicating that LA is an inducible phenotype. Induction of the LA phenotype was found to be associated with de novo protein synthesis and changes in the outer membrane proteins, including the production of a new 18.5-kD polypeptide. A partial NH2-terminal amino acid sequence of this polypeptide was obtained and showed it to be identical through residue 12 to the recently described bundle-forming pilus subunit of EPEC. Expression of the 18.5-kD polypeptide required the 57-megadalton enteropathogenic E. coli adherence plasmid previously shown to be required for the LA phenotype in vitro and full virulence in vivo. This observation, the correspondence of the 18.5-kD polypeptide to an EPEC-specific pilus protein, and the temporal correlation of its expression with the development of the LA phenotype suggest that it may contribute to the EPEC colonial mode of growth.
The Association of Bacterial Adhesion with Dental Caries (2001)

Saliva adhesion of bacteria is a key event in oral biofilm formation. Here, we used partial least-squares (PLS) analysis to correlate adhesion of cariogenic (Streptococcus mutans Ingbritt) and commensal (Actinomyces naeslundii LY7) model bacteria, and their agglutinin and acidic proline-rich protein ligands, respectively, with high and low caries experiences in 38 children reflecting today's skewed caries distribution. Adhesion of S. mutans was among the factors correlating strongest with high caries experience when PLS modeled together with traditional factors (e.g., sugar intake, lactobacilli counts). Saliva phenotypes with high agglutinin levels and Db-s (an acidic PRP variant) coincided with both high caries experience and S. mutans adhesion. A. naeslundii adhesion correlated with low caries experience. Non-Db phenotypes (i.e., acidic PRP-1 and PRP-2 variants) coincided with both low caries experience and S. mutans, but high A. naeslundii, adhesion. Thus, bacterial adhesion may modulate susceptibility and resistance to dental caries.
Effects of water-soluble CO-releasing molecule on hypoxia/reoxygenation in myocardial cells (2016)

Objective
To observe the effects of water-soluble CO-releasing molecules(CORM-3) on reactive oxygen species(ROS)in myocardial cells after hypoxia/reoxygenation.


Methods
After hypoxia for 6h, H9c2 cellswere treated with CORM-3 in 10 μmol/L, 50 μmol/L, 100 μmol/L and 200 μmol/L, respectively, and then the effect was evaluated by detecting the changesof ROS. The content of ROS was determined in H9c2 cell after 2 h, 4 h, 6 h and 10 h for reoxygenation with 50 μmol/L of CORM-3 to evaluate its effect of reoxygenation time.


Results
The content of ROS in 50 μmol/L and 100 μmol/L groupswassignificantly decreased, and the effect was better in 50 μmol/L group. The contentof ROS was significantly decreased in 6h and 10 h reoxygenation groups, and the effect was more significant in 6 h reoxygenation group.


Conclusion
The appropriate concentration of CORM-3 can decrease ROS in hypoxia/reoxygenation of myocardial cells. The effect of CORM-3 in decreasing ROS is correlated with the reoxygenation time.


Key words: 
CORM-3; H9c2; Hypoxia/Reoxygenation; ROS
Neue Arten Der Platgastriden Aus Dem Mecsek Gebirge, Ungarn (Hymenoptera, Proctotrupoidea, Platygasteridae). (1976)

xBio:D Automated Upload
GLOBAL BURNED-LAND ESTIMATION IN LATIN AMERICA USING MODIS COMPOSITE DATA (2008)

This paper presents results of the AQL2004 project, which has been develope within the GOFC-GOLD Latin American network of remote sensing and forest fires (RedLatif). The project intended to obtain monthly burned-land maps of the entire region, from Mexico to Patagonia, using MODIS (moderate-resolution imaging spectroradiometer) reflectance data. The project has been organized in three different phases: acquisition and preprocessing of satellite data; discrimination of burned pixels; and validation of results. In the first phase, input data consisting of 32-day composites of MODIS 500-m reflectance data generated by the Global Land Cover Facility (GLCF) of the University of Maryland (College Park, Maryland, U.S.A.) were collected and processed. The discrimination of burned areas was addressed in two steps: searching for "burned core" pixels using postfire spectral indices and multitemporal change detection and mapping of burned scars using contextual techniques. The validation phase was based on visual analysis of Landsat and CBERS (China-Brazil Earth Resources Satellite) images. Validation of the burned-land category showed an agreement ranging from 30% to 60%, depending on the ecosystem and vegetation species present. The total burned area for the entire year was estimated to be 153 215 km2. The most affected countries in relation to their territory were Cuba, Colombia, Bolivia, and Venezuela. Burned areas were found in most land covers; herbaceous vegetation (savannas and grasslands) presented the highest proportions of burned area, while perennial forest had the lowest proportions. The importance of croplands in the total burned area should be taken with reserve, since this cover presented the highest commission errors. The importance of generating systematic products of burned land areas for different ecological processes is emphasized.
The shielding effect of the double bond in 2‐norbornene and α‐pinene and β‐pinene (2018)

Abstract Assignments of the chemical shifts of the 7‐syn and 7‐anti protons in 2‐norbornene and of the methyl groups in α‐pinene and β‐pinene have been determined by means of nuclear Overhauser effects. These results constrain competing theories of the shielding effects of double bonds.
Experimental and theoretical study of phase separation in aqueous solutions of clouding polymers and carboxylic acids (1993)

The phase behavior of different carboxylic acids/nonionic polymer/water systems has been studied. The carboxylic acids investigated are acetic acid, propionic acid, and butyric acid. The polymers used are a linear random copolymer of ethylene oxide and propylene oxide (UCON) and ethyl(hydroxyethyl)-cellulose (EHEC). These polymers display a lower critical solution temperature (LCST) in water. The decrease of the polarity in the carboxylic acids as the carbon chain increases causes a decrease of the LCST of the system carboxylic acid/polymer/water. As a consequence of this the two-phase region expands. The experimentally determined phase diagrams can qualitatively be described and compared with a theoretical model, based on Flory-Huggins theory of polymer solubility. The cloud-point temperature of the systems decreases as the difference between the effective interaction of polymer-cosolute and cosolute-water increases.
Cloning and Overexpression of the<i>avi2</i>Gene Encoding a Major Cellulase Produced by<i>Humicola insolens</i>FERM BP-5977 (2003)

The avi2 gene encoding Avi2, which is a major cellulase produced by Humicola insolens FERM BP-5977, was cloned and sequenced. Avi2 showed high homology with other family 6 cellulases. The expression vector pNCE4 containing the avi2 gene was constructed, and this strain was transformed using a protoplast method. As a result, the pNCE4 transformant secreted 8-fold more Avi2 than the recipient strain.
Inhibition of staurosporine-induced apoptosis of endothelial cells by activated protein C requires protease-activated receptor-1 and endothelial cell protein C receptor (2003)

In a model of staurosporine-induced apoptosis using EAhy926 endothelial cells, inhibition of apoptosis by activated protein C was dose-dependent and required the enzyme's active site, implicating activated protein C-mediated proteolysis. Consistent with this implication, both protease-activated receptor-1 (PAR-1) and endothelial cell protein C receptor (EPCR) were required for the anti-apoptotic effects of activated protein C.
A comparison of two current e-commerce sites (1998)

The IBM Ease of Use Group asked sixteen participants to compare two e-commerce web sites that sold designer clothing and two that sold computer products. The primary goal of the study was to pinpoint factors or issues affecting the usability of e-commerce sites that need further research.
A Thermostable β-Glucuronidase Obtained by Directed Evolution as a Reporter Gene in Transgenic Plants (2011)

A β-glucuronidase variant, GUS-TR3337, that was obtained by directed evolution exhibited higher thermostability than the wild-type enzyme, GUS-WT. In this study, the utility of GUS-TR337 as an improved reporter was evaluated. The corresponding gus-tr3337 and gus-wt genes were independently cloned in a plant expression vector and introduced into Arabidopsis thaliana. With 4-MUG as a substrate, plants containing the gus-wt gene showed no detectable β-glucuronidase activity after exposure to 60°C for 10 min, while those hosting the gus-tr3337 gene retained 70% or 50% activity after exposure to 80°C for 10 min or 30 min, respectively. Similarly, in vivo β-glucuronidase activity could be demonstrated by using X-GLUC as a substrate in transgenic Arabidopsis plants hosting the gus-tr3337 gene that were exposed to 80°C for up to 30 min. Thus, the thermostability of GUS-TR3337 can be exploited to distinguish between endogenous and transgenic β-glucuronidase activity, which is a welcome improvement in its use as a reporter.
Biology, ecology, and management of dogwood borer in eastern apple orchards (2003)

Abstract The dogwood borer, Synanthedon scitula (Harris) (Lepidoptera: Sesiidae), has the broadest host range of the clearwing moths and is considered to be an economically important pest of many ornamental, fruit, and nut trees. Since the 1980s, dogwood borer has been recognized as an increasingly important, indirect pest of apple, Malus domestica Borkh. (Rosaceae), in eastern North America, owing mainly to increased plantings of apple on size-controlling rootstocks that promote the formation of adventitious root initials (burr knots) on the rootstock and scion. Burr knots appear to be preferred oviposition sites for dogwood borer females, although infestations can also be initiated in wounds, pruning cuts, and crotches on the branches and trunk. Larval feeding in burr knots does not adversely affect the growth and vigor of apple trees, but their mining outward from burr knots into vascular tissue can ultimately cause tree decline and death. Chlorpyrifos is the most effective insecticide for controlling dogwood borer. A supplemental label in the United States permits post-bloom, trunk drench applications of chlorpyrifos specifically for control of borers in apple, with several restrictions that preclude control of infestations higher in the tree. The ongoing review of pesticide tolerances dictated by the 1996 Food Quality Protection Act of the United States of America makes the long-term availability of this chemical uncertain. Cultural practices, such as deeper planting or berming, can reduce the likelihood of infestation of new apple plantings by dogwood borer, although they do not preclude infestations from developing above the graft union. This review and discussion is based on our contention that research toward the development of alternative, behaviorally based management strategies for dogwood borer in apple and other economically important host plants is warranted. Our review and synthesis of the dogwood borer literature revealed important gaps in knowledge about basic aspects of its biology that pertain directly to the development of alternative control tactics based on behavioral manipulation. There is considerable confusion surrounding the sex pheromone of dogwood borer and conflicting results on the response of males to isomers and blends of isomers of its purported pheromone. Studies using sex attractants to monitor its phenology in apple and non-apple habitats have yielded discrepant results and conclusions. Differences in the effectiveness of commercially available pheromone lures for trapping dogwood borer have been reported and the ability of pheromone traps to accurately reflect emergence or population density remains in question. Regardless of pronounced differences in the duration and modality of the seasonal flight of dogwood borer among different geographical regions within its range, the conclusion of univoltinism across most of its range has been perpetuated, based on extremely limited developmental data collected exclusively from individuals that developed on dogwood.
Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping (2016)

Single-molecule techniques are being developed with the exciting prospect of revolutionizing the healthcare industry by generating vast amounts of genetic and proteomic data. One exceptionally promising route is in the use of nanopore sensors. However, a well-known complexity is that detection and capture is predominantly diffusion limited. This problem is compounded when taking into account the capture volume of a nanopore, typically 10(8)-10(10) times smaller than the sample volume. To rectify this disproportionate ratio, we demonstrate a simple, yet powerful, method based on coupling single-molecule dielectrophoretic trapping to nanopore sensing. We show that DNA can be captured from a controllable, but typically much larger, volume and concentrated at the tip of a metallic nanopore. This enables the detection of single molecules at concentrations as low as 5 fM, which is approximately a 10(3) reduction in the limit of detection compared with existing methods, while still maintaining efficient throughput.
Synthesis and Reactivity of 16-Electron Cycloheptatrienyl-Molybdenum(0) Complexes with Bis(imidazolin-2-imine) Ligands (2008)

The reaction of the ligands 1,2-bis(1,3-diisopropyl-4,5-dimethylimidazolin-2-imino)ethane (BLiPr) and 1,2-bis(1,3,4,5-tetramethylimidazolin-2-imino)ethane (BLMe) with the cycloheptatrienyl-molybdenum complex [(η7-C7H7)Mo(CH3CN)3]X (X = BF4, PF6) leads to acetonitrile substitution and formation of stable 16-electron half-sandwich complexes (η7-C7H7)Mo(BLiPr)]BF4, [1]BF4, and [(η7-C7H7)Mo(BLMe)]X, [2]X (X = BF4, PF6), two of which could be crystallographically characterized to reveal undistorted two-legged piano stool geometries. Cyclovoltammetric studies exhibit very negative redox potentials of E° = −1.095 V and E° = −1.138 V versus the ferrocene/ferrocenium couple (0 V), indicative of very electron-rich metal complexes. Oxidation of [2]X with (η7-C7H7)BF4 or [Fe(η5-C5H5)2]PF6 furnished the Mo(I) complexes of general formula [(η7-C7H7)Mo(BLMe)(CH3CN)]X2, [3]X2 (X = BF4, PF6), which display a three-legged piano stool geometry in the solid state by coordination of one additional acetonitrile molecule to molybdenum. The same geometry is observed upon reaction of [1]BF4 and [2]PF6 with 2,6-dimethylphenyl isocyanide (XyNC) to afford the isocyanide complexes [1(CNXy)]BF4 and [2(CNXy)]PF6. Their CN stretching vibrations are observed at 2041 and 2030 cm−1, confirming the electron richness and strong π-electron-releasing capability of the molybdenum-imine moiety.
Abstract DDT01-01: BI 905677: A first-in-class LRP5/6 antagonist targeting Wnt-driven proliferation and immune escape (2019)

Abstract Aberrant Wnt/β-catenin signalling has been shown to play a key role in tumorigenesis and resistance to immunotherapy in several tumor indications. Wnt ligand-mediated signals are transduced by two distinct receptor types, the serpentine receptor Frizzled (FZD) and the closely related single-span transmembrane proteins LRP5 and LRP6. Formation of the FZD-Wnt-LRP5/6 trimeric complex induces phosphorylation of LRP5 or LRP6 intracellular domains leading to inactivation of the β-catenin degradation complex, allowing stabilized β-catenin to enter the nucleus, bind to the TCF transcription factors, and act as a transcriptional activator of Wnt target genes. We have developed a first-in-class LRP5/6 antagonist, a bi-paratopic antibody comprising two modules binding to distinct epitopes of LRP5 (or LRP6). BI 905677 is a highly potent blocker of signalling induced by the Wnt family of ligands and shows anti-tumor activity in cancer models harbouring genomic alterations in upstream regulators of the Wnt pathway, such as RNF43 mutations or RSPO fusions. Furthermore, BI 905677 in combination with an anti-PD-1 immune checkpoint inhibitor induces dendritic cell activation and T cell infiltration in tumor tissues leading to complete responses in syngeneic tumor models. A Phase I clinical trial is underway in patients with advanced cancer to evaluate safety, tolerability, pharmacokinetic and pharmacodynamic properties, and efficacy of BI 905677 (NCT03604445). Citation Format: Vittoria Zinzalla, Barbara Drobits-Handl, Alexander Savchenko, Jörg Rinnenthal, Markus Johann Bauer, Michael Sanderson, Sophia Maria Blake, Norbert Schweifer, Robert Gerhardus Jacob Vries, Hans Clevers, Norbert Kraut. BI 905677: A first-in-class LRP5/6 antagonist targeting Wnt-driven proliferation and immune escape [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr DDT01-01.
Phage display selection for cell-specific ligands: Development of a screening procedure suitable for small tumor specimens (2005)

Phage display technology has been widely used for developing tumor-targeting agents. Most of the efforts were directed towards identifying phage-displayed ligands against cancer-relevant purified targets and cancer cell lines. Whole cell screening procedures typically use a relatively large sample size and are not ideally suited for complex tumor tissues. We describe here a screening protocol that is suitable for non-adherent tumor cells from biopsy specimens. It requires only approximately 20,000 cells/round for biopanning and approximately 10,000 cells/well for subsequent clone binding assessment by ELISA. We standardized the newly developed protocol using erbB2-overexpressing SKBR3 breast cancer cells and compared the results with conventional protocols employing about 10-times more plate-adhered fixed or live cells. The selection rate of SKBR3-binding clones from biopanning approximately 20,000 non-adherent SKBR3 cells by our filter cup protocol was comparable to that obtained from using approximately 200,000 plate-adhered cells. Assessment of clones selected from different phage libraries showed that clones from fixed or live cells, adherent or non-adherent cells, either biopanned in filter cup or plate share specific motifs and binding properties. Some of the clones from each biopanning protocol bound to purified erbB2 and shared motifs with erbB family of receptors and their known ligands. These results demonstrated that the protocol developed in this study was capable of selecting cell-specific ligands using relatively small numbers of cells. Screening cells from a fresh human breast cancer specimen using our protocol showed enrichment of tumor binding clones at successive rounds of selection and some of the selected clones were tumor-specific in comparison to normal breast cells. These protocols have direct application to screen for tumor-binding ligands with small tumor tissue specimens.
Asynchronous Computing in Sense Amplifier-Based Pass Transistor Logic (2009)

This paper presents the design and implementation of a low-energy asynchronous logic topology using sense amplifier-based pass transistor logic (SAPTL). The SAPTL structure can realize very low energy computation by using low-leakage pass transistor networks at low supply voltages. The introduction of asynchronous operation in SAPTL further improves energy-delay performance without a significant increase in hardware complexity. We show two different self-timed approaches: 1) the bundled data and 2) the dual-rail handshaking protocol. The proposed self-timed SAPTL architectures provide robust and efficient asynchronous computation using a glitch-free protocol to avoid possible dynamic timing hazards. Simulation and measurement results show that the self-timed SAPTL with dual-rail protocol exhibits energy-delay characteristics better than synchronous and bundled data self-timed approaches in 90-nm CMOS.
Hemoglobin Malmö β-97 (FG-4) Histidine→Glutamine: A Cause of Polycythemia (1972)

A striking history of familial polycythemia led to a search for an abnormal hemoglobin. None could be demonstrated by routine electrophoretic methods, but the propositus' hemolysate had increased oxygen affinity. Manipulation of the conditions of electrophoresis, and chromatographic methods, permitted identification of hemoglobin Malmö. Studies of hemolysates demonstrated a normal Bohr effect, decreased heme-heme interaction (n=1.58), and a p50 of 1.3 mm Hg at 10 degrees C and pH 7.2. The amino acid substitution occurs in the same position (FG-4) as that of hemoglobin Chesapeake, but in the beta-chain rather than the alpha-chain. The two types of hemolysate have different pathophysiologic properties, and carriers of hemoglobin Malmö exhibit more striking hematologic abnormalities.
p53 loss-of-heterozygosity is a necessary prerequisite for mutant p53 stabilization and gain-of-function in vivo (2017)

Missense mutations in TP53 comprise >75% of all p53 alterations in cancer, resulting in highly stabilized mutant p53 proteins that not only lose their tumor-suppressor activity, but often acquire oncogenic gain-of-functions (GOFs). GOF manifests itself in accelerated tumor onset, increased metastasis, increased drug resistance and shortened survival in patients and mice. A known prerequisite for GOF is mutant p53 protein stabilization, which itself is linked to aberrant protein conformation. However, additional determinants for mutant p53 stabilization likely exist. Here we show that in initially heterozygous mouse tumors carrying the hotspot GOF allele R248Q (p53Q/+), another necessary prerequisite for mutant p53 stabilization and GOF in vivo is loss of the remaining wild-type p53 allele, termed loss-of-heterozygosity (LOH). Thus, in mouse tumors with high frequency of p53 LOH (osteosarcomas and fibrosarcomas), we find that mutant p53 protein is stabilized (16/17 cases, 94%) and tumor onset is significantly accelerated compared with p53+/- tumors (GOF). In contrast, in mouse tumors with low frequency of p53 LOH (MMTV-Neu breast carcinomas), mutant p53 protein is not stabilized (16/20 cases, 80%) and GOF is not observed. Of note, human genomic databases (TCGA, METABRIC etc.) show a high degree of p53 LOH in all examined tumor types that carry missense p53 mutations, including sarcomas and breast carcinomas (with and without HER2 amplification). These data - while cautioning that not all genetic mouse models faithfully represent the human situation - demonstrate for the first time that p53 LOH is a critical prerequisite for missense mutant p53 stabilization and GOF in vivo.
Ankle-arm index as a marker of atherosclerosis in the Cardiovascular Health Study. Cardiovascular Heart Study (CHS) Collaborative Research Group. (1993)

There was an inverse dose-response relation of the AAI with CVD risk factors and subclinical and clinical CVD among older adults. The lower the AAI, the greater the increase in CVD risk; however, even those with modest, asymptomatic reductions in the AAI (0.8 to 1.0) appear to be at increased risk of CVD.