gebhart/patrepeval huggingface dataset:
Investigation of the Cooperative Structure of Fc Fragments from Myeloma Immunoglobulin G (1998)

The cooperative structure of Fc fragments prepared from myeloma human IgG1 was studied using scanning microcalorimetry and fluorescence at pH 4.2-8.0. It was shown that the first to be melted are CH2 domains whose interaction with each other is rather weak, while that with CH3 domains is strong. Then CH3 domains which form a single cooperative block are melted. The data for the structure of the Fc fragment in solution agree with the X-ray data according to which the interaction between CH2 domains is mediated by the carbohydrate moiety while the two CH3 domains are strongly associated. The presence of intensive CH2-CH3 interaction is a distinctive feature of the state of the Fc fragment in the given pH region as compared to that at pH <4.1 [Tischenko, V. M., et al. (1982) Eur. J. Biochem. 126, 517-521; Ryazantsev, S., et al. (1990) Eur. J. Biochem. 190, 393-399]. First, cis interactions greatly increase the free energy of the native structure stabilization in CH2 domains. Second, they decrease this energy for CH3 domains when compared to the state of the latter at pH 3.8 or within the Fc' fragment (the dimer of CH3 domains). The temperature and enthalpy of melting of CH2 domains coincide in all the samples studied despite heterogeneity of the carbohydrate moiety. Thus, it may be postulated that the conservative part of CH2 domains makes a cardinal contribution to the interaction of these domains with the carbohydrate moiety.
Dynamic Modulation of the Regulatory Domain of Myosin Heads by pH, Ionic Strength, and RLC Phosphorylation in Synthetic Myosin Filaments (1999)

The position of the myosin head with respect to the filament backbone is thought to be a function of pH, ionic strength (micro) and the extent of regulatory light chain (RLC) phosphorylation [Harrington (1979) Proc. Natl. Acad. Sci. U.S.A. 76, 5066-5070]. The object of this study is to examine the dynamics of the proximal part of the myosin head (regulatory domain) which accompany the changes in head disposition. The essential light chain was labeled at Cys177 with the indanedione spin-label followed by the exchange of the labeled proteins into myosin. The mobility of the labeled domain was investigated with saturation transfer electron paramagnetic resonance in reconstituted, synthetic myosin filaments. We have found that the release of the heads from the myosin filament surface by reduction of electrostatic charge is accompanied by a 2-fold increase in the mobility of the regulatory domain. Phosphorylation of the RLC by myosin light chain kinase resulted in a smaller 1. 5-fold increase of motion, establishing that the head disordering observed by electron microscopy [Levine et al. (1996) Biophys. J. 71, 898-907] is due to increased mobility of the heads. This result indirectly supports the hypothesis that the RLC phosphorylation effect on potentiation of force arises from a release of heads from the filament surface and a shift of the heads toward actin.
Lactobacillus buchneri ile silolanmış Baklagil, Buğdaygil ve Karışımlarının Silaj Özellikleri (2013)

Tarmsal!Aratrma!Enstits!Mdrl,
Assessment of epithelial cells' immune and inflammatory response to<i>Staphylococcus aureus</i>when exposed to a macrolide (2010)

Non-specific (innate) immune response plays a major role in defending the udder from bacterial invasion. Moreover, recent investigations suggest that mammary gland epithelial cells (MGEC) could have a large and important role as a source of soluble components of immune defences. Despite many attempts to find other ways to control/prevent mastitis (i.e. vaccine) antimicrobial therapy is still the most used and effective means of curing clinical and subclinical mastitis. However, drug concentrations and therapy durations are far from the optimal in order to reduce costs. Therefore, efficacy of antimicrobial therapy is dependent not only on the substance activity but also on the positive interactions with the host innate immune response. Surprisingly, information on these interactions is rather scarce in the mastitis field. A simple experimental model was developed based on BME-UV cell line, Staphylococcus aureus as a challenge and a macrolide as an antimicrobial to assess the interactions among epithelial cells, Staph. aureus and the potential effects of antimicrobials on the immune system. The results of this study confirmed that tylosin has good antimicrobial activity against both intracellular and extracellular Staph. aureus in bovine MGEC without affecting cell functions. In this study, a significant down-regulation of IL-1 and IL-6 was observed, while TNF and IL-8 expression rate numerically increased, but differences were not significant. To our knowledge, this is the first paper assessing the concentration of two lysosomal enzymes, lysozyme and N-acetyl-β-d-glucosaminidase (NAGase), in Staph. aureus-stimulated MGEC. The results of this study confirmed that tylosin could have a significant effect on the release of these enzymes. Moreover, even if both enzymes have a similar substrate as a target, the results suggest different secretion mechanisms and an influence of antimicrobial treatment on these mechanisms. Successful mastitis cure is the result of achieving the optimal efficiency of both innate immune defences and therapeutical activities, by means of killing bacteria without eliciting an excessive inflammatory response. Therefore, antimicrobials for mastitis therapy should be selected not only on bacterial sensitivity, but also for their positive interactions with the innate immune response of the mammary gland. This study showed that an in-vitro model based on Staph. aureus challenge on MGEC could be helpful in assessing both the intracellular and extracellular activity of antimicrobials and their influence on epithelial cell immune and inflammatory response.
A Hydrogen Peroxide/ Microwave Advanced Oxidation Process for Sewage Sludge Treatment (2006)

This study focused on the efficacy of the microwave/hydrogen peroxide advanced oxidation process (MW/H2O2-AOP) on the secondary sludge treatment. The results indicated that at temperatures of 80 degrees C and above, essentially all of the chemical oxygen demand (COD) was solubilized by the combined MW/H2O2-AOP. This process also solubilized nutrients (nitrogen, phosphorus and metals) from sludge which can be extracted for other purposes, such as struvite crystallization. Based on a stoichiometric molar ratio of 1:1:1 for Mg:NH3:PO4, ammonia was found to be the limiting nutrient without any H2O2 addition in the process at all temperatures. With the addition of H2O2, ortho-phosphate became the limiting nutrient. In all treatments, magnesium was non-limiting, thus magnesium addition is not required for subsequent struvite crystallization. The MW/H2O2-AOP also enhanced the pasteurization or sterilization of sludge. The MW/H2O2-AOP provides novel sludge management options for the wastewater industry, not only in solubilization of carbon for further methane production, but also in nutrients extraction for crystallization for use as fertilizer.
Isolation of Campylobacter and Salmonella from houseflies (Musca domestica) in a university campus and a poultry farm in Selangor, Malaysia. (2011)

Insects, in particular house flies and cockroaches, have been shown to be associated with the spread of pathogens in livestock farms and in human disease outbreaks: among these pathogens are salmonellae and campylobacters. A total of 60 flies were caught in three locations: an animal teaching facility and a cafeteria in a university campus, and a poultry farm. Five percent (5%) and 13.3% of flies sampled were found to carry Campylobacter and Salmonella, respectively.
LumiWatch (2018)

Compact, worn computers with projected, on-skin touch interfaces have been a long-standing yet elusive goal, largely written off as science fiction. Such devices offer the potential to mitigate the significant human input/output bottleneck inherent in worn devices with small screens. In this work, we present the first fully functional and self-contained projection smartwatch implementation, containing the requisite compute, power, projection and touch-sensing capabilities. Our watch offers roughly 40 sq. cm of interactive surface area -- more than five times that of a typical smartwatch display. We demonstrate continuous 2D finger tracking with interactive, rectified graphics, transforming the arm into a touchscreen. We discuss our hardware and software implementation, as well as evaluation results regarding touch accuracy and projection visibility.
Versican in epithelial ovarian cancer: Relation to hyaluronan, clinicopathologic factors and prognosis (2003)

Versican, a proteoglycan previously reported to increase in other malignant tumours, was studied immunohistochemically in 299 primary epithelial ovarian cancers, their 43 metastases and 6 normal ovaries to evaluate its prognostic value and relation to hyaluronan, another extracellular matrix molecule increased in cancer and a binding partner of versican. The stainings were scored according to the area percentage of strong versican signal of total peri- and intratumoural stroma as low (<15%) or high (>or=15%). Epithelial staining of the tumours was scored as positive or negative. Low and high area percentage of strong stromal versican staining were observed in 133 and 166 carcinomas, respectively. A low area percentage of strong stromal versican staining correlated with mucinous histology (p = 0.019) and early International Federation of Gynecologists and Obstetritians (FIGO) stage (p < 0.0005), whereas a high percentage was associated with reduced 5-year survival rate of the patients (44% vs. 32%; p = 0.032). Versican was associated with the cancer cells in 151 tumours and correlated with clear cell histology (p < 0.0005), early FIGO stage (p = 0.049) and increased recurrence-free survival (63% vs. 47%; p = 0.032). However, in Cox's multivariate analyses with the conventional prognostic factors included, neither stromal nor cancer cell-associated versican reached a significant prognostic value. Versican is thus enriched in the malignant stroma surrounding and promoting the growth of ovarian cancer, probably acting with hyaluronan, and associates with unfavourable prognosis but does not constitute an independent indicator of patient survival.
Gender differences in brain peripheral benzodiazepine receptor (PBR) expression and seizures produced by heptachlor during development. (2008)

Heptachlor has been widely used as an insecticide. It is a GABA-A antagonist and causes seizures. It also increases peripheral benzodiazepine receptors (PBRs) in brain. PBRs are found on the outer mitochondrial membrane in glia, rather than in neurons, and are necessary for steroidogenesis in brain. We compared the effects of acute oral administration of heptachlor (60 mg/ml oil/kg body wt) at 10 ages from postnatal day (PND) 0 to 60 on brain PBR expression and seizure severity in both male and female rats at 1 and 2 hr after administration. From PND 10 through 60, brain PBR expression was increased about 175-225% of controls at both 1 and 2 hr after heptachlor in females. In males however, PBRs were only increased at 30-60 days at 1 hr but not at any age at 2 hr. At 2 hr after heptachlor at 30-60 days in males, PBRs were significantly lower than at 1 hr and even tended to be lower than control levels. By contrast, seizure intensity was greater in males than in females from 10 through 20 days of age at 1 hr and was even greater at 2 hr from 16 through 30 days of age, reflecting the lower PBR levels at 2 hr than at 1 hr in males. Thus, the gender difference in PBR expression was the opposite of the gender difference in seizure intensity. PBRs in brain synthesize several neurosteroids, including allopregnanolone, which is a potent anticonvulsant agent. We hypothesize that the gender differences in seizure intensity after heptachlor were due to the action of heptachlor in greatly increasing PBR expression in females but not in males. Thus the greater expression of PBRs in females would result in more synthesis of allopregnanolone than in males. Therefore, because of allopregnanolone's anticonvulsant effects, seizure intensity was less in females than in males. By comparison, maximal electroshock (MES) caused seizures and increased PBRs in brain in both male and female developing rats with no gender differences at 10-20 days of age.
High resolution computed tomography in the evaluation of hyperprolactinemia. (1986)

High resolution computed tomography should eventually replace other imaging modalities in the evaluation of the pituitary gland in patients with endocrine disorders. In cooperative patients the intrasellar contents can be quickly and easily evaluated with minimal irradiation.
Prostaglandins posttranscriptionally inhibit monocyte expression of interleukin 1 activity by increasing intracellular cyclic adenosine monophosphate. (1986)

The effect of prostaglandins and cyclic 3',5'-adenosine monophosphate (cAMP) on expression of human interleukin 1 (IL 1) activity was investigated in the promonocytic tumor cell line U937 and peripheral blood monocytes. After in vitro stimulation by bacteriotoxins, monocytes express IL 1 activity, as measured by the thymocyte costimulation assay. Although high doses of bacteriotoxins impaired expression of IL 1, this effect was reversed by indomethacin. When stimulated monocytes were cultured with exogenous prostaglandins, including PGE2 and PGI2, expression of IL 1 was reversibly inhibited. Interaction of U937 cells with PGE2 resulted in a transient increase in cellular cAMP concentration during the first hour of exposure. Other agents that cause an increase in levels of cellular cAMP, including theophylline, isobutylmethylxanthine, dibutyryl cAMP, or cholera toxin, also reversibly reduced expression of IL 1 by stimulated monocytes. The effect of these agents on levels of IL 1 mRNA was analyzed. TSS-stimulated increase in levels of IL 1-encoding mRNA was studied both by DNA-RNA hybridization analysis performed with an IL 1-beta cDNA probe and by injecting U937 polyadenylated mRNA into frog oocytes and then measuring expression of IL 1 activity in the oocyte supernatant. Agents that increased levels of cellular cAMP did not alter levels of IL 1 mRNA accumulation or global protein synthesis in TSS-stimulated U937 cells. IL 1 stimulates synthesis of prostaglandins that reach high levels during immune and inflammatory reactions. Our data suggest that prostaglandins participate in an autoregulatory pathway that posttranscriptionally reduces expression of IL 1 activity.
Design considerations for a network of information (2008)

The existing Internet ecosystem is a result of decades of evolution. It has managed to scale well beyond the original aspirations. Evolution, though, highlighted a certain degree of inadequacies that is well documented. In this position paper we present the design considerations for a re-architected global networking architecture which delivers dissemination and non-dissemination objects only to consenting recipients, reducing unwanted traffic, linking information producers with consumers independently of the hosts involved, and connects the digital with the physical world. We consider issues ranging from the proposed object identifier/locator split to security and trust as we transition towards a Network of Information and relate our work with the emerging paradigm of publish/subscribe architectures. We introduce the fundamental components of a Network of Information, i.e., name resolution, routing, storage, and search, and close this paper with a discussion about future work.
High prevalence of codon 213ARG→STOP mutations of theTP53 gene in human ovarian cancer in the southwestern part of The Netherlands (1998)

As in many human malignancies, TP53 mutations are the most common genetic alterations in malignant human ovarian tumours. An approach often used in the determination of TP53 status is immunohistochemical staining of the protein. Non-missense mutations, especially those of the null type, causing premature termination codons and resulting in truncated proteins, may often not be detectable by immunohistochemistry. Therefore, current estimates of TP53 alterations in ovarian cancer may be inaccurate. By using polymerase chain reaction-single strand conformation polymorphism analysis and sequencing techniques, we have found a high prevalence of TP53 non-missense mutations in exons 5-8 in ovarian tumour specimens from patients from the southwestern part of The Netherlands. Twenty-nine of 64 tumours showed mutations, of which 10 were non-missense mutations. The majority (9 of 10) of these non-missense mutations, including 7 nonsense mutations and 2 frameshift deletions, were null type mutations and could not be detected by immunohistochemical staining. Five of the 7 nonsense mutations were mutations at codon 213 (Arg-->Stop). The nature of the high prevalence of this nonsense mutation in our series of ovarian carcinomas remains unknown. In addition to the 9 null type mutations, a splice junction mutation was encountered. In conclusion, we have observed a high prevalence (13%) of ovarian tumours with null type mutations in exons 5-8 that did not result in immunostaining. Our data suggest that, especially in ovarian cancer, immunological assessment of TP53 is not an adequate tool to study TP53 alteration. A frequent nonsense mutation at codon 213 in 5 (8%) of 64 tumour specimens represents an important finding.
Innovations in Global Electronic Data Delivery (1999)

Abstract New techniques and technologies have been developed and assembled to create a global electronic data delivery framework that is robust, secure and efficient. This framework serves any data type throughout its life span—as it is acquired, processed and archived—and provides the means for it to be transmitted and intrinsically integrated into the end user's domain. Details of the data delivery framework and its overall scope will be given, followed by a number of geographically distinct, tailored applications of the technology. The advancing technology front has resulted in an explosion in data volume, of which an ever-increasing amount is digital. In the midst of this explosion, the need for the highest quality data to be efficiently and electronically delivered to its various destinations has remained a goal. The solution presented herein combines an enhanced mechanism for electronic data delivery with tools that improve data usability, storage and management. All the while the data adhere to the exploration and production (E&P) standards. This framework is being applied today to formation evaluation data, such as wireline and logging-while-drilling data. However, it will soon expand to encompass all forms of data produced within the E&P industry. As the industry rapidly assimilates advances in electronic communications to improve operations efficiency, its decision-makers are demanding drilling and formation evaluation data on their desktops in real time. This paper outlines significant contributions in the areas of data security and transmission reliability, capitalizing on established and expanding networks (Internet, intranet), data composition and management techniques, and the development of software applications to facilitate end-user data reception, handling and manipulation.
Nonlinear Folding Wing Tips for Gust Loads Alleviation (2016)

A recent consideration in aircraft design is the use of folding wing tips with the aim of enabling higher aspect ratio aircraft with less induced drag, but also meeting airport gate limitations. This study builds on previous work investigating the effect of exploiting folding wing tips in-flight as a device to reduce dynamic gust loads, but now with the introduction of a passive nonlinear hinge spring to allow wing-tip deflections only for larger load cases. A representative civil jet aircraft aeroelastic model is used in a multibody simulation code to explore the effect of introducing such a hinged wing-tip device on the loads behavior. It was found that significant reductions in the dynamic loads were possible.
In Defense of One-Vs-All Classification (2004)

Editor: John Shawe-Taylor We consider the problem of multiclass classification. Our main thesis is that a simple “one-vs-all ” scheme is as accurate as any other approach, assuming that the underlying binary classifiers are well-tuned regularized classifiers such as support vector machines. This thesis is interesting in that it disagrees with a large body of recent published work on multiclass classification. We support our position by means of a critical review of the existing literature, a substantial collection of carefully controlled experimental work, and theoretical arguments.
Retention Temperature and Column Efficiency in Programmed Temperature Gas Chromatography (1960)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTRetention Temperature and Column Efficiency in Programmed Temperature Gas ChromatographyH. W. Habgood and W. E. HarrisCite this: Anal. Chem. 1960, 32, 4, 450–453Publication Date (Print):April 1, 1960Publication History Published online1 May 2002Published inissue 1 April 1960https://pubs.acs.org/doi/10.1021/ac60160a001https://doi.org/10.1021/ac60160a001research-articleACS PublicationsRequest reuse permissionsArticle Views341Altmetric-Citations56LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Sulfometuron Incorporation in Cationic Micelles Adsorbed on Montmorillonite (2002)

The aim of this study was to understand the interactions between alkylammonium cations present as monomers and micelles and a clay mineral, montmorillonite, to develop slow release formulations of anionic herbicides, such as sulfometuron (SFM) whose leaching in soils is an environmental and economic problem. In the proposed formulation the herbicide is incorporated in positively charged micelles of quaternary amine cations, which in turn adsorb on the negatively charged clay. The adsorption of hexadecyltrimethylammonium (HDTMA) and octadecyltrimethylammonium (ODTMA) on montmorillonite was studied above and below their critical micelle concentrations (CMC). At concentrations above the CMC, the loading exceeded the clay's cation exchange capacity (CEC) and indicated higher affinity of the cation with the longer alkyl chain. An adsorption model could adequately simulate adsorption at concentrations below the CMC, and yield fair predictions for the effect of ionic strength. The model indicated that above the CMC adsorbed micelles contributed significantly to the amount of ODTMA adsorbed. Evidence for adsorption of ODTMA micelles on montmorillonite was provided by X-ray diffraction, freeze-fracture electron microscopy, and dialysis bag measurements. SFM was not adsorbed directly on the clay mineral, and adsorbed at low levels, when the organic cation was adsorbed as monomers. In contrast, a large fraction of SFM adsorbed on the clay mineral when incorporated in micelles that adsorbed on the clay.