gebhart/patrepeval huggingface dataset:
The Effect of Diel Temperature and Light Cycles on the Growth of Nannochloropsis oculata in a Photobioreactor Matrix (2014)

A matrix of photobioreactors integrated with metabolic sensors was used to examine the combined impact of light and temperature variations on the growth and physiology of the biofuel candidate microalgal species Nannochloropsis oculata. The experiments were performed with algal cultures maintained at a constant 20 °C versus a 15 °C to 25 °C diel temperature cycle, where light intensity also followed a diel cycle with a maximum irradiance of 1920 µmol photons m(-2) s(-1). No differences in algal growth (Chlorophyll a) were found between the two environmental regimes; however, the metabolic processes responded differently throughout the day to the change in environmental conditions. The variable temperature treatment resulted in greater damage to photosystem II due to the combined effect of strong light and high temperature. Cellular functions responded differently to conditions before midday as opposed to the afternoon, leading to strong hysteresis in dissolved oxygen concentration, quantum yield of photosystem II and net photosynthesis. Overnight metabolism performed differently, probably as a result of the temperature impact on respiration. Our photobioreactor matrix has produced novel insights into the physiological response of Nannochloropsis oculata to simulated environmental conditions. This information can be used to predict the effectiveness of deploying Nannochloropsis oculata in similar field conditions for commercial biofuel production.
The<i>Pseudomonas aeruginosa pirA</i>gene encodes a second receptor for ferrienterobactin and synthetic catecholate analogues (2005)

Actively secreted iron chelating agents termed siderophores play an important role in the virulence and rhizosphere competence of fluorescent pseudomonads, including Pseudomonas aeruginosa which secretes a high affinity siderophore, pyoverdine, and the low affinity siderophore, pyochelin. Uptake of the iron-siderophore complexes is an active process that requires specific outer membrane located receptors, which are dependent of the inner membrane-associated protein TonB and two other inner membrane proteins, ExbB and ExbC. P. aeruginosa is also capable of using a remarkable variety of heterologous siderophores as sources of iron, apparently by expressing their cognate receptors. Illustrative of this feature are the 32 (of which 28 putative) siderophore receptor genes observed in the P. aeruginosa PAO1 genome. However, except for a few (pyoverdine, pyochelin, enterobactin), the vast majority of P. aeruginosa siderophore receptor genes still remain to be characterized. Ten synthetic iron chelators of catecholate type stimulated growth of a pyoverdine/pyochelin deficient P. aeruginosa PAO1 mutant under condition of severe iron limitation. Null mutants of the 32 putative TonB-dependent siderophore receptor encoding genes engineered in the same genetic background were screened for obvious deficiencies in uptake of the synthetic siderophores, but none showed decreased growth stimulation in the presence of the different siderophores. However, a double knock-out mutant of ferrienterobactin receptor encoding gene pfeA (PA 2688) and pirA (PA0931) failed to be stimulated by 4 of the tested synthetic catecholate siderophores whose chemical structures resemble enterobactin. Ferric-enterobactin also failed to stimulate growth of the double pfeA-pirA mutant although, like its synthetic analogues, it stimulated growth of the corresponding single mutants. Hence, we confirmed that pirA represents a second P. aeruginosa ferric-enterobactin receptor. The example of these two enterobactin receptors probably illustrates a more general phenomenon of siderophore receptor redundancy in P. aeruginosa.
Lawyers as Nonlawyers in Child-Custody and Visitation Cases: Questions from the Legal Ethics Perspective Response (1997)

The Child Advocacy Clinic at Indiana University School of Law-Bloomington ("Indiana Clinic") takes as a premise that, in custody and visitation disputes, children may be best served by lawyers as guardians ad litem, rather than by lawyers qua lawyers, on one hand, or by nonlawyer guardians ad litem, on the other. In contrast, participants in a national conference at Fordham Law School' concluded two years ago that "[a] lawyer appointed or retained to serve a child in a legal proceeding should serve as the child's lawyer." That is, the lawyer should regard the child as a client, not a ward. Implicit in this recommendation was that, if the court appoints a guardian ad litem ("GAL") to serve the child, it should assign a nonlawyer to that role. This disagreement raises intertwined questions about how best to serve children in the context of the existing adversary process for making custody and visitation decisions and the prevailing "best interest" standard by which these decisions are made First, if someone is appointed to represent the child what role should that person play? And, second, to whom should courts assign this role?
Spectroscopic and Intensity Modulated Photocurrent Imaging of Polymer/Fullerene Solar Cells (2015)

Molecular spectroscopic and intensity modulated photocurrent spectroscopy (IMPS) imaging techniques are used to map morphology-dependent charge recombination in organic polymer/fullerene solar cells. IMPS uses a small (∼10%) sinusoidal modulation of an excitation light source and photocurrent responses are measured while modulation frequencies are swept over several decades (∼1 Hz-20 kHz). Solar cells consisting of either poly(3-hexylthiophene) (P3HT) and poly(2-methoxy-5-(3'-7'-dimethyloctyloxy)-1,4-phenylenevinylene) (MDMO-PPV) blended with a soluble fullerene derivative, [6,6]-phenyl-C61-butyric acid methyl ester (PCBM) are used as targets. The morphologies of these polymer/fullerene systems are distinctly different due to PCBM miscibility in various polymer conformers. IMPS responses of both blend solar cells show unique morphology-dependent charge generation, transport and extraction signatures that can be spatially correlated to microscopic variations in local composition and packing by constructing IMPS images along with corresponding molecular spectroscopic imaging over the same scan area. We find that boundaries separating enriched polymer and fullerene domains promote nongeminate charge recombination appearing as positive phase shifts in the IMPS response. These zones are susceptible to degradation and we propose the approaches herein can be used to probe material and device degradation in situ under various conditions, such as oxygen content, temperature and ionizing radiation.
A 4‐month study on the effect of chlorhexidine mouth washes on 50 soldiers (1972)

abstract – Aqueous solutions of chlorhexidine salts have been used as mouth washes to supplement routine oral hygiene in a group of young adults for a period of 4 months. In the first part of the study (2 months) the effect of plaque formation and gingival condition in the presence of calculus and rough surfaces was studied. Under such circumstances the chlorhexidine mouth washes reduced the amount of plaque on an average of 66%, whereas the gingival inflammation was reduced by 24% in the same period. In the next 2 months the effect of chlorhexidine was studied on scaled and polished teeth. The plaque reduction was now 84% and the Gingival Index values were reduced by 43% after subgingival scaling. No effect on gingival inflammation adjacent to pockets exceeding 3 mm was observed.
MUC4 activates HER2 signalling and enhances the motility of human ovarian cancer cells (2008)

The mucin MUC4 is a high molecular weight transmembrane glycoprotein. It consists of a mucin-type subunit (MUC4alpha) and a transmembrane growth factor-like subunit (MUC4beta). The mucin MUC4 is overexpressed in many epithelial malignancies including ovarian cancer, suggesting a possible role in the pathogenesis of these cancers. In this study, we investigated the functional role of MUC4 in the human ovarian cancer cell line SKOV3. The mucin MUC4 was ectopically expressed by stable transfection, and its expression was examined by western blot and confocal microscopy analyses. The in vitro studies demonstrated an enhanced motility of MUC4-expressing SKOV3 cells compared with the vector-transfected cells. The mucin MUC4 expression was associated with apparent changes in actin organisation, leading to the formation of microspike, lammelopodia and filopodia-like cellular projections. An enhanced protein expression and activation of HER2, a receptor tyrosine kinase, was also seen, although no significant change was observed in HER-2 transcript levels in the MUC4-transfected SKOV3 cells. Reciprocal co-immunoprecipitation revealed an interaction of MUC4 with HER2. Further, the MUC4-overexpressing SKOV3 cells exhibited an increase in the phosphorylation of focal adhesion kinase (FAK), Akt and ERK, downstream effectors of HER2. Taken together, our findings demonstrate that MUC4 plays a role in ovarian cancer cell motility, in part, by altering actin arrangement and potentiating HER2 downstream signalling in these cells.
Molecular analysis of the cytoplasmic domain of CD4: overlapping but noncompetitive requirement for lck association and down-regulation by Nef (1996)

Expression of the HIV Nef protein results in the down-regulation of cell surface expression of CD4, with a di-leucine motif in the cytoplasmic domain of CD4 being required for this effect. However, our results indicate that this motif is not sufficient to confer sensitivity to down-regulation by Nef. Using site-directed mutagenesis and a transient expression system, we demonstrate that an alpha-helical stretch of amino acids of the cytoplasmic tail of CD4 is also required for the down-regulation of CD4 induced by Nef. Some CD4 mutations allowed the discrimination between PMA- and Nef-induced down-regulation, suggesting the existence of multiple pathways. In addition, our results demonstrate that this motif is involved in the association of CD4 with the tyrosine kinase p56lck, thus defining a multifunctional domain of CD4. Although there is overlap between the sequence requirement for lck association and susceptibility to Nef, we fail to detect any preferential decrease in lck association with CD4 when Nef is expressed during acute HIV infection. Altogether, these results demonstrate that there is an overlapping, but noncompetitive, sequence requirement in the cytoplasmic domain of CD4 for lck association and down-regulation by Nef.
NOTICES OF RECENT PUBLICATIONS (1972)

Journal Article NOTICES OF RECENT PUBLICATIONS Get access Bionics—The Nervous System as a Control System . By R. R. GAWRONSKY . 1971 . Pp. 475 . Amsterdam : Elsevier . Price Dfl. 75 ($22). J. NEWSOM DAVIS J. NEWSOM DAVIS Search for other works by this author on: Oxford Academic PubMed Google Scholar Brain, Volume 95, Issue 3, 1972, Page 644, https://doi.org/10.1093/brain/95.3.644 Published: 01 July 1972
Polarization microscope using a near infrared full-Stokes imaging polarimeter (2015)

This paper presents a polarization microscope using an infrared (IR) full-Stokes imaging polarimeter. The IR polarimeter utilizes an optimized interference-based micropolarizer design, and provides full-Stokes images with resolution of 1608 × 1208 at 35 frames/second. The device fabrication, instrument calibration, performance evaluation, and measurement results are presented. The measurement error of the imaging polarimeter is less than 3.5%, and the standard deviations are less than 2%.
Electron ray tracing with high accuracy (1986)

An electron ray tracing program is developed to investigate the overall geometrical and chromatic aberrations in electron optical systems. The program also computes aberrations due to manufacturing errors in lenses and deflectors. Computation accuracy is improved by (1) calculating electrostatic and magnetic scalar potentials using the finite element method with third-order isoparametric elements, and (2) solving the modified ray equation which the aberrations satisfy. Computation accuracy of 4 nm is achieved for calculating optical properties of the system with an electrostatic lens.
Role of Axial Donors in the Ligand Isomerization Processes of Quadruply Bonded Dimolybdenum(II) Compounds (2008)

Quadruply bonded dimolybdenum(II) complexes with NP-R (2-(2-R)-1,8-naphthyridine; R = thiazolyl (NP-tz), furyl (NP-fu), thienyl (NP-th)) and 2,3-dimethyl-1,8-naphthyridine (NP-Me 2) have been synthesized by reactions of cis-[Mo2(OAc)2(CH3CN)6][BF4]2 with the corresponding ligands. The products cis-[Mo2(NP-tz)2(OAc)2][BF4]2 (1), trans-[Mo2(NP-fu)2(OAc)2][BF4]2 (2), trans-[Mo2(NP-th)2(OAc)2][BF4]2 (3), and trans-[Mo2(NP-Me2)2(OAc)2][BF4]2 (4) were isolated and characterized. The NP-R ligands with stronger R = pyridyl and thiazolyl donors result in cis isomers whereas the weaker furyl and thienyl appendages lead to compounds having a trans orientation of the ligands. The use of NP-Me2 leads to a trans structure with a tetrafluoroborate anion occupying one of the axial sites. Complete replacement of two acetate groups by acetonitrile in 1 and 2 resulted in the cis isomers [Mo2(NP-tz)2(CH3CN)4][OTf]4 (5) and [Mo2(NP-fu)2(CH3CN)4][OTf]4 (6) respectively. The combination of one acetate and two acetonitriles as ancillary ligands, however, yields trans-[Mo2(NP-tz)2(OAc)(CH3CN)2][BF4]3 (7) in the solid state as determined by X-ray crystallography. (1)H NMR spectra of the products are diagnostic of the cis and trans dispositions of the ligands. Solution studies reveal that the ligand arrangements observed in the solid state are mostly retained in the acetonitrile medium. The only exception is 7, for which a mixture of cis and trans isomers are detected on the NMR time scale. The isolation of trans compounds 2- 4 from the cis precursor [Mo2(OAc)2(CH3CN)6][BF4]2 indicates that an isomerization process occurs during the reactions. The mechanism involving acetate migration through axial coordination has been invoked to rationalize the product formation. Compounds 1- 7 were structurally characterized by single-crystal X-ray methods.
Transport activity of AE3 chloride/bicarbonate anion-exchange proteins and their regulation by intracellular pH (1999)

Plasma membrane Cl-/HCO3- anion-exchange (AE) proteins contribute to regulation of intracellular pH (pHi). We characterized the transport activity and regulation by pHi of full-length AE3 and the cardiac isoform, AE3c, both of which are expressed in the heart. AE3c is an N-terminal variant of AE3. We also characterized AE1, AE2 and a deletion construct (AE3tr) coding for the common region of AE3 and AE3c. AE proteins were expressed by transient transfection of HEK-293 cells, and transport activity was monitored by following changes of intracellular pH or intracellular chloride concentration associated with anion exchange. Transport activities, measured as proton flux (mM H+˙min-1), were as follows: AE1, 24; AE2, 32; full-length AE3, 9; AE3c, 4 and AE3tr, 4. The wide range of transport activities is not explained by variation of cell surface processing since approx. 30% of each isoform was expressed on the cell surface. pHi was clamped at a range of values from 6.0-9.0 to examine regulation of AE proteins by pHi. Whereas AE2 was steeply inhibited by acid pHi, AE1, AE3 and AE3c were essentially insensitive to changes of pHi. We conclude that AE3 and AE3c can contribute to pHi recovery after cellular-acid loading.
Substrate-induced inactivation of the OXA2 <i>β</i>-lactamase (1993)

The hydrolysis time courses of 22 beta-lactam antibiotics by the class D OXA2 beta-lactamase were studied. Among these, only three appeared to correspond to the integrated Henri-Michaelis equation. 'Burst' kinetics, implying branched pathways, were observed with most penicillins, cephalosporins and with flomoxef and imipenem. Kinetic parameters characteristic of the different phases of the hydrolysis were determined for some substrates. Mechanisms generally accepted to explain such reversible partial inactivations involving branches at either the free enzyme or the acyl-enzyme were inadequate to explain the enzyme behaviour. The hydrolysis of imipenem was characterized by the occurrence of two 'bursts', and that of nitrocefin by a partial substrate-induced inactivation complicated by a competitive inhibition by the hydrolysis product.
Mesenchymal Stem Cells Ameliorate Experimental Autoimmune Uveoretinitis by Comprehensive Modulation of Systemic Autoimmunity (2011)

These data suggest that the immunoregulatory properties of MSCs effectively interfere with the autoimmune attack in the course of EAU through the comprehensive modulation of systemic autoimmunity.
A rapidly activating sustained K<sup>+</sup> current modulates repolarization and excitation–contraction coupling in adult mouse ventricle (1997)

1. The K+ currents which control repolarization in adult mouse ventricle, and the effects of changes in action potential duration on excitation-contraction coupling in this tissue, have been studied with electrophysiological methods using single cell preparations and by recording mechanical parameters from an in vitro working heart preparation. 2. Under conditions where Ca(2+)-dependent currents were eliminated by buffering intracellular Ca2+ with EGTA, depolarizing voltage steps elicited two rapidly activating outward K+ currents: (i) a transient outward current, and (ii) a slowly inactivating or 'sustained' delayed rectifier. 3. These two currents were separated pharmacologically by the K+ channel blocker 4-amino-pyridine (4-AP). 4-AP at concentrations between 3 and 200 microM resulted in (i) a marked increase in action potential duration and a large decrease in the sustained K+ current at plateau potentials, as well as (ii) a significant increase in left ventricular systolic pressure in the working heart preparation. 4. The current-voltage (I-V) relation, kinetics, and block by low concentrations of 4-AP strongly suggest that the rapid delayed rectifier in adult mouse ventricles is the same K+ current (Kv1.5) that has been characterized in detail in human and canine atria. 5. These results show that the 4-AP-sensitive rapid delayed rectifier is a very important repolarizing current in mouse ventricle. The enhanced contractility produced by 4-AP (50 microM) in the working heart preparation demonstrates that modulation of the action potential duration, by blocking a K+ current, is a very significant inotropic variable.
Iridacycles for hydrogenation and dehydrogenation reactions (2017)

Iridacycles are a group of cyclometalated metal complexes, which have recently been shown to be versatile catalysts for a range of reactions. This Feature Article provides an account of the work carried out by our groups. We start with an introduction to the variety of iridacycles and how they entered into catalysis. The following sections provide an overview of the discovery and applications in catalysis of the iridacycles originated from our labs, including transfer hydrogenation with formic acid, hydrogenation with H<sub>2</sub>, dehydrogenation and borrowing-hydrogen reactions. Where possible, mechanistic insight is also presented. A notable advantage of these iridacycles is their ease of preparation, stability to air and water and high modularity. With only one coordination site available for substrate activation, the iridacycles differ from most homogeneous catalysts structure-wise.
Electrospun Metal Nanofiber Webs as High-Performance Transparent Electrode (2010)

Transparent electrodes, indespensible in displays and solar cells, are currently dominated by indium tin oxide (ITO) films although the high price of indium, brittleness of films, and high vacuum deposition are limiting their applications. Recently, solution-processed networks of nanostructures such as carbon nanotubes (CNTs), graphene, and silver nanowires have attracted great attention as replacements. A low junction resistance between nanostructures is important for decreasing the sheet resistance. However, the junction resistances between CNTs and boundry resistances between graphene nanostructures are too high. The aspect ratios of silver nanowires are limited to ∼100, and silver is relatively expensive. Here, we show high-performance transparent electrodes with copper nanofiber networks by a low-cost and scalable electrospinning process. Copper nanofibers have ultrahigh aspect ratios of up to 100000 and fused crossing points with ultralow junction resistances, which result in high transmitance at low sheet resistance, e.g., 90% at 50 Ω/sq. The copper nanofiber networks also show great flexibility and stretchabilty. Organic solar cells using copper nanowire networks as transparent electrodes have a power efficiency of 3.0%, comparable to devices made with ITO electrodes.
Clinical and Laboratory Evaluation of Peripheral Prism Glasses for Hemianopia (2009)

The peripheral prism glasses provided reported benefits (usually in obstacle avoidance) to 2/3 of the patients completing the study, a very good success rate for a vision rehabilitation device. Possible reasons for long-term discontinuation and limited adaptation of perceived direction are discussed.
The instantaneous monitoring of polyacrylamide gels during electrophoresis (1976)

The advantages of being able to see protein zones in a gel during electrophoresis (and hence before staining) are pointed out, and a method is described which depends on local increments of refractive index in these zones. The use of local increments of refractive index in polyacrylamide gels for measuring protein concentrations in zones during electrophoresis is briefly considered; it is found that such increments are greater than would be expected from the amount of protein when sodium dodecyl sulphate is present. The enhancement depends on conditions and time of running. This makes quantitative estimates difficult, but the sensitivity of detection of protein zones by observations based on refractive-index changes is greatly increased by this property of sodium dodecyl sulphate. Methods are described for making optically uniform gels (both with uniform and with graded concentrations of polyacrylamide), necessary for observation of small changes in refractive index. A simple dark-field system of observation is described. Examples are given showing protein samples observed with the system during electrophoresis and compared with the same gel stained with Coomassie Blue after completion of the run. Under optimal conditions the optical method is comparable in sensitivity with staining. With the proteins of lower mol.wt. (approx. 15000), the optical method is not so sensitive, becoming less sensitive with longer running time. This loss of sensitivity is greatly decreased by using more concentrated polyacrylamide gels, and graded gels are therefore more suitable for optical observation than are uniform gels. The observation of protein zones during electrophoresis adds nothing to the time needed for making a stained gel and gives much information long before it can be obtained from the stained gel.
Oxidized Phospholipids on Lipoprotein(a) Elicit Arterial Wall Inflammation and an Inflammatory Monocyte Response in Humans (2016)

URL: http://www.trialregister.nl. Unique identifier: NTR5006 (VIPER Study).