gebhart/patrepeval huggingface dataset:
Diminished hepatic binding protein for desialylated glycoproteins during chemical hepatocarcinogenesis. (1980)

The lectin hepatic binding protein has a specific binding capacity for desialylated serum glycoproteins and is limited to hepatocyte membranes. This binding capacity was reduced by approximately 60% in the neoplastic nodules which resulted from exposure of rat livers to N-2-acetylaminofluorene. The binding capacity of the primary hepatocellular carcinomas which resulted from this regimen was reduced by 95%. The loss of binding capacity was found to be proportional to the decreased concentration of immunologically detectable lectin in the altered tissues.
Word and String Recognition (2007)

This chapter contains sections titled: Introduction Character Segmentation Classification-Based String Recognition HMM-Based Recognition Holistic Methods for Handwritten Word Recognition Chapter Summary References
1H-NMR analysis of microbial-derived organic acids in primary root carious lesions and saliva (1999)

In addition to lowered pH values, the molecular profile and concentrations of microbial-derived organic acids in carious dentin are important demineralization parameters involved in the induction, development and progression of dental caries. High-resolution proton ((1)H) NMR spectroscopy was employed to examine the organic acid status of primary root carious lesions. (1)H-NMR analysis of post-neutralized perchloric acid extracts of active carious lesions revealed that at an operating frequency of 600 MHz, the (1)H-NMR-detectable organic acid composition of carious dentin samples (mean molecular percentage content +/- standard error; the mean molecular percentage content is defined here as the mean of the concentration of each (1)H-NMR-visible organic acid/anion expressed as a percentage of total (1)H-NMR-detectable organic acid/anion level in each sample) was acetate 51 +/- 2%, formate 37 +/- 2%, lactate 5 +/- 1%, propionate 3 +/- 0.8%, pyruvate 2.4 +/- 0.3%, n-butyrate 1.2 +/- 0.2%; succinate 0.1 +/- 0.1%; iso-butyrate, n- and iso-valerate, and n- and iso-caproate (total) <0.2%. Further components detectable included alanine, glycine, choline, phosphorylcholine, trimethylamine oxide, methanol, glycolate and assorted saccharides. In view of their high dissociation constants (K(a)), our results demonstrate that formic and pyruvic acids (K(a) = 1.77 x 10(-4) and 3.20 x 10(-3) mol/dm(3), respectively) contribute substantially to the decreased pH values associated with active caries lesions (cf. lactate K(a) = 1.40 x 10(-4) mol/dm(3)), and hence the pathogenesis of primary root caries.
Lack of Oxidative Phosphorylation and Low Mitochondrial Membrane Potential Decrease Susceptibility to Apoptosis and Do Not Modulate the Protective Effect of Bcl-xL in Osteosarcoma Cells (2000)

We explored the role of low mitochondrial membrane potential (DeltaPsim) and the lack of oxidative phosphorylation in apoptosis by assessing the susceptibility of osteosarcoma cell lines with and without mitochondrial DNA to staurosporine-induced death. Our cells without mitochondrial DNA had low DeltaPsim and no functional oxidative phosphorylation. Contrary to our expectation, these cells were more resistant to staurosporine-induced death than were the parental cells. This reduced susceptibility was associated with decreased activation of caspase 3 but not with the mitochondrial permeability transition pore or cytochrome c release from the mitochondria. Apoptosis in both cell lines was associated with an increase in DeltaPsim. Bcl-x(L) could protect both cell types against caspase 3 activation and apoptosis by a mechanism that does not appear to be mediated by mitochondrial function or modulation of DeltaPsim. Nevertheless, we found that Bcl-x(L) expression can stimulate cell respiration in cells with mitochondrial DNA. Our results showed that the lack of functional oxidative phosphorylation and/or low mitochondrial membrane potential are associated with an antiapoptotic effect, possibly contributing to the development of some types of cancer. It also reinforces a model in which Bcl-x(L) can exert an antiapoptotic effect by stimulating oxidative phosphorylation and/or inhibiting caspase activation.
Innate and adaptive immunity in female genital tract: cellular responses and interactions (2005)

The mucosal immune system in the female reproductive tract (FRT) has evolved to meet the unique requirements of dealing with sexually transmitted bacterial and viral pathogens, allogeneic spermatozoa, and the immunologically distinct fetus. Analysis of the FRT indicates that the key cells of the innate and adaptive immune systems are present and functionally responsive to antigens. Acting through Toll-like receptors in the Fallopian tubes, uterus, cervix, and in the vagina, epithelial cells, macrophages, natural killer cells, and neutrophils confer protection through the production of chemokines and cytokines, which recruit and activate immune cells, as well as bactericidal and virucidal agents, which confer protection at times when adaptive immunity is downregulated by sex hormones to meet the constraints of procreation. The overall goal of this paper is to define the innate immune system in the FRT and, where possible, to define the regulatory influences that occur during the menstrual cycle that contribute to protection from and susceptibility to potential pathogens. By understanding the nature of this protection and the ways in which innate and adaptive immunity interact, these studies provide the opportunity to contribute to the foundation of information essential for ensuring reproductive health.
Effect of Asphaltene Structure on Association and Aggregation Using Molecular Dynamics (2013)

The aggregation of asphaltenes has been established for decades by numerous experimental techniques; however, very few studies have been performed on the association free energy and asphaltene aggregation in solvents. The lack of reliable and coherent data on the free energy of association and aggregation size of asphaltene has imposed severe limitations on the thermodynamic modeling of asphaltene phase behavior. Current thermodynamic models either consider asphaltenes as non-associating components or use fitting parameters to characterize the association. In this work, the relations between Gibbs free energy of asphaltene association and asphaltene molecular structure are studied using molecular dynamics (MD). The free energy of association is computed from the potential of mean force profile along the separation distance between the centers of mass of two asphaltene molecules using the umbrella sampling technique in the GROMACS simulation package. The average aggregation number for asphaltene nanoaggregates and clusters is also calculated through MD simulations of 36 asphaltene molecules in toluene and heptane in order to estimate the effects of association free energy and steric repulsion on the aggregation behavior of asphaltenes. Our simulation results confirm that the interactions between aromatic cores of asphaltene molecules are the major driving force for association as the energy of association increases substantially with the number of aromatic rings. Moreover, heteroatoms attached to the aromatic cores have much more influence on the association free energy than to ones attached to the aliphatic chains. The length and number of aliphatic chains do not seem to have a noticeable effect on asphaltene dimerization; however, they have a profound effect on asphaltene aggregation size since steric repulsion can prevent asphaltenes from forming T-shape configurations and therefore decrease the aggregation size of asphaltenes significantly. Our MD simulation results show for the first time asphaltene precipitation in heptane as an explicit solvent, and predict three distinct stages of aggregation (nanoaggregation, clustering, and flocculation) as proposed by the modified Yen model. Finally, the association free energy for asphaltenes in heptane is higher than that in toluene, which is consistent with asphaltene aggregate sizes obtained from MD simulations.
SARS-CoV-2 variant B.1.1.7 is susceptible to neutralizing antibodies elicited by ancestral Spike vaccines (2021)

The SARS-CoV-2 Spike glycoprotein mediates virus entry and is a major target for neutralizing antibodies. All current vaccines are based on the ancestral Spike with the goal of generating a protective neutralizing antibody response. Several novel SARS-CoV-2 variants with multiple Spike mutations have emerged, and their rapid spread and potential for immune escape have raised concerns. One of these variants, first identified in the United Kingdom, B.1.1.7 (also called VUI202012/01), contains eight Spike mutations with potential to impact antibody therapy, vaccine efficacy and risk of reinfection. Here we employed a lentivirus-based pseudovirus assay to show that variant B.1.1.7 remains sensitive to neutralization, albeit at moderately reduced levels (~2-fold), by serum samples from convalescent individuals and recipients of two different vaccines based on ancestral Spike: mRNA-1273 (Moderna), and protein nanoparticle NVX-CoV2373 (Novavax). Some monoclonal antibodies to the receptor binding domain (RBD) of Spike were less effective against the variant while others were largely unaffected. These findings indicate that B.1.1.7 is not a neutralization escape variant that would be a major concern for current vaccines, or for an increased risk of reinfection.
The preparation of monodispersed anionic polystyrene microspheres via emulsifier-free emulsion polymerization (2014)

采用无皂乳液聚合法制备了粒径大小可控且均一的聚苯乙烯微球,研究了反应过程中SDS加入量、反应温度、引发剂加入量及反应介质对聚苯乙烯微球粒径大小及分布的影响.利用傅立叶变换红外光谱仪对微球结构进行了表征.
Demonstration of a high-speed nonscanning imaging spectrometer (1997)

We report results from a field demonstration of a nonscanning high-speed imaging spectrometer [computed-tomography imaging spectrometer (CTIS)] capable of simultaneously recording spatial and spectral information about a rapidly changing scene. High-speed spectral imaging was demonstrated by collection of spectral and spatial snapshots of a missile in flight. This instrument is based on computed-tomography concepts and operates in the visible spectrum (430-710nm). Raw image data were recorded at video frame rate (30frames / s) and an integration time of 2ms. An iterative reconstruction of the spatial and spectral scene information from each raw image took 10s. We present representative missile spectral signatures from the missile firing. The accuracy of the high-speed spectrometer is demonstrated by comparison of extended-source static-scene spectra acquired by a nonimaging reference spectrometer with spectra acquired by use of CTIS imaging of the same static scenes.
Use of 5-cyano-2,3-ditolyl tetrazolium chloride for quantifying planktonic and sessile respiring bacteria in drinking water (1993)

Direct microscopic quantification of respiring (i.e., viable) bacteria was performed for drinking water samples and biofilms grown on different opaque substrata. Water samples or biofilms developed in flowing drinking water were incubated with the vital redox dye 5-cyano-2,3-ditolyl tetrazolium chloride (CTC) and R2A medium. One hour of incubation with 0.5 mM CTC was sufficient to obtain intracellular reduction of CTC to the insoluble fluorescent formazan (CTF) product, which was indicative of cellular respiratory (i.e., electron transport) activity. This result was obtained with both planktonic and biofilm-associated cells. Planktonic bacteria were captured on 0.2-microns-pore-size polycarbonate membrane filters and examined by epifluorescence microscopy. Respiring cells containing CTF deposits were readily detected and quantified as red-fluorescing objects on a dark background. The number of CTC-reducing bacteria was consistently greater than the number of aerobic CFU determined on R2A medium. Approximately 1 to 10% of the total planktonic population (determined by counterstaining with 4,6-diamidino-2-phenylindole) were respirometrically active. The proportion of respiring bacteria in biofilms composed of drinking water microflora was greater, ranging from about 5 to 35%, depending on the substratum. Respiring cells were distributed more or less evenly in biofilms, as demonstrated by counterstaining with 4,6-diamidino-2-phenylindole. The amount of CTF deposited in single cells of Pseudomonas putida that formed monospecies biofilms was quantified by digital image analysis and used to indicate cumulative respiratory activity. These data indicated significant cell-to-cell variation in respiratory activity and reduced electron transport following a brief period of nutrient starvation.(ABSTRACT TRUNCATED AT 250 WORDS)
Computerized geophysical tomography (1979)

Computerized tomography is used as an aid in geophysical exploration. With this method, detailed pictures of electromagnetic properties in the regions between pairs of boreholes can be reconstructed. The spatial distribution of attenuation or propagation velocity is calculated from line integrals along rays in the plane between boreholes, and displayed as a digital picture. In principle, the transmission of seismic data can also be analyzed by this method as long as it obeys the line integral model. Iterative solution techniques, similar to those used in medical X-ray tomography are applied to solve the large sets of linear equations relating the line integral data and the remote observables. A straight-line ray optics model was used for energy propagation between boreholes. The performance of the reconstruction algorithm is demonstrated using computer-generated data and it is then applied to experimental data collected by continuous-wave electromagnetic transmission probing. Experimental attenuation reconstructions are presented of a proposed underground urban mass-transit site. Both lateral and vertical variations are displayed using these methods.
Interleukin‐10 prevents experimental allergic encephalomyelitis in rats (1994)

Experimental allergic encephalomyelitis (EAE) is an autoimmune disease mediated by myelin protein-specific CD4+ T lymphocytes of the T(h)1-like phenotype. In rats, the disease is characterized by a monophasic clinical manifestation, followed by a subsequent spontaneous remission and the establishment of life-long resistance to reinduction of disease. Recent data indicate that intracerebral cytokine production, in particular synthesis of interleukin(IL)-10, is selectively up-regulated during the recovery phase of disease. This led us to assess the effects of IL-10 on different rat lymphoid cell functions in vitro and to consider the possibility of an IL-10-mediated treatment to prevent the induction of central nervous system (CNS) autoimmune disease in vivo. Human recombinant IL-10 suppressed interferon-gamma induced major histocompatibility complex class II up-regulation in rat peritoneal macrophages, exhibited pleiotropic effects on thymocytes and totally abrogated tumor necrosis factor production of encephalitogenic T lymphocytes in vitro, without simultaneously affecting proliferative responses of the cells. Upon systemic administration during the initiation phase of disease, IL-10 was effective in markedly suppressing the subsequent induction of EAE in Lewis rats. This suppression of clinical disease coincided with a significant and specific elevation of myelin basic protein-specific autoantibody production, a sustained T cell proliferative response to myelin basic protein and a diminution of CNS infiltrations and thymic involutions in diseased animals. These data implicate IL-10 as a possible candidate for treatment of T(h)1-mediated CNS (auto-) immune diseases.
A <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:msup> <mml:mi>C</mml:mi> <mml:mo>*</mml:mo> </mml:msup> </mml:math> -dynamical system with Dedekind zeta partition function and spontaneous symmetry breaking (1999)

In this paper we extend to arbitrary number fields a construction of Bost-Connes of a <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:msup> <mml:mi>C</mml:mi> <mml:mo>*</mml:mo> </mml:msup> </mml:math> -dynamical system with spontaneous symmetry breaking and partition function the Riemann zeta function.
[Contribution to the continuous indirect blood pressure measurement]. (1976)

The plethysmanometer described follows the principle of the relaxed wall of the vessel. Here the pressure is adjusted in a finger cuff and by means of a pneumatic regulation is varied in such a way that the light plethysmogram of the adequate finger does not show any more pulsations. Thus the pressure effected on the finger above the cuff corresponds to the pressure in the finger arteries and is to be registered in mm Hg. When the course is measured in the same test person with changing of the arterial pressure (e.g. absolute arrhythmia or compressed-air pressure experiment) the blood pressure of the aorta measured when a heart catheter is diagnostically indicated shows a very close correlation to the unbloodily registered pressure of the finger arteries. On the other hand, greater varieties of the correlation coefficient which can be proved from test person to test person at present do not yet allow a formula obligatory in general, in order to tansfer the value unbloodily measured into the adequate bloody one. Nevertheless, already nowadays great ranges of application are possible for the progressing measuring of the blood pressure.
Transformation by the v-fms oncogene product: role of glycosylational processing and cell surface expression. (1985)

The effect of glycosylational-processing inhibitors on the synthesis, cell surface expression, endocytosis, and transforming function of the v-fms oncogene protein (gp140fms) was examined in McDonough feline sarcoma virus-transformed Fischer rat embryo (SM-FRE) cells. Swainsonine (SW), a mannosidase II inhibitor, blocked complete processing, but an abnormal v-fms protein containing hybrid carbohydrate structures was expressed on the cell surface. SW-treated SM-FRE cells retained the transformed phenotype. In contrast, two glucosidase I inhibitors (castanospermine [CA] and N-methyl-1-deoxynojirimycin [MdN]) blocked carbohydrate remodeling at an early stage within the endoplasmic reticulum and prevented cell surface expression of v-fms proteins. CA-treated SM-FRE cells reverted to the normal phenotype. Neither SW, CA, nor MdN affected either endocytosis or the tyrosine kinase activity associated with the v-fms gene product in vitro. These results demonstrate the necessity of carbohydrate processing for cell surface expression of the v-fms gene product and illustrate the unique ability to modulate the transformed state of SM-FRE cells with the glycosylational-processing inhibitors CA and MdN.
O 2 evolution on a clean partially reduced rutile TiO2(110) surface and on the same surface precovered with Au1 and Au2: The importance of spin conservation (2008)

We have used spin-polarized density functional theory (DFT) to study O(2) evolution on a clean partially reduced rutile TiO(2)(110) surface (i.e., a surface having oxygen vacancies) and its interaction with Au(1) or Au(2) cluster adsorbed on it. We assume that the total spin of the electronic wave function is related to the number of unpaired spins (N(s)) and calculate the binding and the activation energies involved in O(2) evolution for fixed values of N(s). In addition to keeping N(s) constant, we assume that reactions in which the N(s) of the reactants differs from that of the products are very slow. The potential energy surfaces obtained in this way depend strongly on N(s). For example, O(2) dissociation at the vacancy site on a clean partially reduced TiO(2)(110) surface is exothermic by 0.85 eV in the triplet state and the highest activation energy in the chain of reactions leading to the O(2) dissociation is 0.67 eV. In the singlet state, O(2) dissociation is endothermic by 0.11 eV and the activation energy leading to dissociation is 1.30 eV. These observations are in qualitative agreement with scanning tunneling microscopy experiment in which O(2) dissociation on a partially reduced rutile TiO(2)(110) surface is observed at temperature as low as 120 K. In contrast, O(2) dissociation is predicted to be endothermic and is prevented by an activation barrier larger than 1 eV in all the previous DFT calculations, in which the DFT program varies N(s) to get the lowest energy state. We find that on a partially reduced rutile TiO(2)(110) with Au(1) and Au(2) preadsorbed on its surface, O(2) dissociates at the vacancy site: One oxygen atom fills the oxygen vacancy and the other becomes available for oxidation chemistry. This means that Au(1) and Au(2) supported on a partially reduced TiO(2)(110) surface is not an oxidation catalyst since the presence of oxygen turns it into a stoichiometric Au(n)/TiO(2)(110) surface. Finally, we find that the evolution of oxygen on Au(1) and Au(2) in the gas phase is very different from the evolution on the same clusters supported on the partially reduced TiO(2)(110) surface. For example, the molecular adsorption of O(2) is favored in the gas phase (except on Au(1) (-) and Au(2) (-) in the quartet state), while the dissociative adsorption is favored by more than 1 eV when Au(1) and Au(2) are supported on the partially reduced TiO(2)(110). Furthermore, the activation energies associated with O(2) dissociation in the gas phase (DeltaE(act)>2.4 eV) are reduced by at least a factor of 2 when the clusters are supported on TiO(2)(110).
DpnA, a methylase for single-strand DNA in the Dpn II restriction system, and its biological function. (1989)

The two DNA-adenine methylases encoded by the Dpn II restriction gene cassette were purified, and their activities were compared on various DNA substrates. DpnA was able to methylate single-strand DNA and double-strand DNA, whereas DpnM methylated only double-strand DNA. Although both enzymes act at 5'-GATC-3' in DNA, DpnA can also methylate sequences altered in the guanine position, but at a lower rate. A deletion mutation in the dpnA gene was constructed and transferred to the chromosome. Transmission by way of the transformation pathway of methylated and unmethylated plasmids to dpnA mutant and wild-type recipients was examined. The mutant cells restricted unmethylated donor plasmid establishment much more strongly than did wild-type cells. In the wild type, the single strands of donor plasmid DNA that enter by the transformation pathway are apparently methylated by DpnA prior to conversion of the plasmid to a double-strand form, in which the plasmid would be susceptible to the Dpn II endonuclease. The biological function of DpnA may, therefore, be the enhancement of plasmid transfer to Dpn II-containing strains of Streptococcus pneumoniae.
A fully-integrated bandpass amplifier for extracellular neural recording (2003)

This paper describes a fully-integrated bandpass amplifier for neural recording applications. Diode-connected sub-threshold-biased NMOS transistors in the feedback loop of the amplifier realize the high on-chip impedance necessary to eliminate the dc baseline potential of the electrode while amplifying neural field and action potentials. The amplifier has an in-band gain of 38.2dB, a dc gain of 0, an upper cutoff frequency of 24kHz and a low frequency cutoff of 66mHz. It consumes 92/spl mu/W from /spl plusmn/1.5V supplies and has an input-referred noise of 16.6/spl mu/Vrms integrated from 100Hz-10kHz. The amplifier occupies 0.082mm/sup 2/ in 3/spl mu/m features and is being used on a 64-site neural recording probe.