gebhart/patrepeval huggingface dataset:
HLA-A*26, HLA-B*4002, HLA-B*4006, and HLA-B*4801 Alleles Predispose to Adult T Cell Leukemia: The Limited Recognition of HTLV Type 1 Tax Peptide Anchor Motifs and Epitopes to Generate Anti-HTLV Type 1 Tax CD8 <sup>+</sup> Cytotoxic T Lymphocytes (2001)

Genetic risk for adult T cell leukemia (ATL) has been implicated by ethnic and familial segregation of ATL patients from HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP). To clarify the genetic risk for ATL, we characterized HLA class I alleles of ATL patients and analyzed the anchor motifs of HTLV-1 peptides binding to HLA class I molecules, using 291 lines of anti-HTLV-1 CD8(+) cytotoxic T lymphocytes (CTLs) generated in vitro with a total of 165 synthetic peptides for HTLV-1 Tax and Env proteins. Allele frequencies of HLA-A*26, B*4002, B*4006, and B*4801 were significantly higher in ATL patients than in HAM/TSP patients and asymptomatic HTLV-1 carriers in southern Japan. CD8(+) CTL analysis revealed the HTLV-1 Tax peptide sequence to completely lack anchor motifs of peptides binding to HLA-A*26,B*4002, and B*4006 molecules but to possess one anchor for HLA-B*4801, while the HTLV-1 Env peptide sequence had many anchor motifs for HLA-A*26, B*4002, B*4006, and B*4801 molecules. Most ATL patients featured heterozygous HLA class I alleles composed of HLA-A*26, B*4002, B*4006, and B*4801, with a lower number of HTLV-1 Tax peptide anchor motifs and epitopes generating anti-HTLV-1 Tax CD8(+) CTLs than individuals possessing other HLA alleles. The relationship between Tax epitope and ATL incidence was verified by the significantly decreased number of HTLV-1 Tax epitopes in ATL patients compared with asymptomatic HTLV-1 carriers (p < 0.01) as well as late onset ATL patients (p < 0.001). These results indicate that HLA-A*26, B*4002, B*4006, and B*4801 alleles predispose to ATL because of the limited recognition of HTLV-1 Tax peptide anchor motifs and epitopes capable of generating anti-HTLV-1 Tax CD8(+) CTLs.
Imaging of HER2/neu expression in BT-474 human breast cancer xenografts in athymic mice using [99mTc]-HYNIC-trastuzumab (Herceptin) Fab fragments (2005)

[(99m)Tc]-HYNIC-trastuzumab Fab localized specifically in HER2/neu-overexpressing human breast cancer xenografts in athymic mice, allowing imaging of the tumours within the useful lifetime of the radionuclide.
Preferential Channeling of Energy Fuels Toward Fat Rather Than Muscle During High Free Fatty Acid Availability in Rats (2001)

The preferential channeling of different fuels to fat and changes in the transcription profile of adipose tissue and skeletal muscle are poorly understood processes involved in the pathogenesis of obesity and insulin resistance. Carbohydrate and lipid metabolism may play relevant roles in this context. Freely moving lean Zucker rats received 3- and 24-h infusions of Intralipid (Pharmacia and Upjohn, Milan, Italy) plus heparin, or saline plus heparin, to evaluate how an increase in free fatty acids (nonesterified fatty acid [NEFA]) modulates fat tissue and skeletal muscle gene expression and thus influences fuel partitioning. Glucose uptake was determined in various tissues at the end of the infusion period by means of the 2-deoxy-[1-3H]-D-glucose technique after a euglycemic-hyperinsulinemic clamp: high NEFA levels markedly decreased insulin-mediated glucose uptake in red fiber-type muscles but enhanced glucose utilization in visceral fat. Using reverse transcriptase-polymerase chain reaction and Northern blotting analyses, the mRNA expression of fatty acid translocase (FAT)/CD36, GLUT4, tumor necrosis factor (TNF)-alpha, peroxisome proliferator-activated receptor (PPAR)-gamma, leptin, uncoupling protein (UCP)-2, and UCP-3 was investigated in different fat depots and skeletal muscles before and after the study infusions. GLUT4 mRNA levels significantly decreased (by approximately 25%) in red fiber-type muscle (soleus) and increased (by approximately 45%) in visceral adipose tissue. Furthermore, there were marked increases in FAT/CD36, TNF-alpha, PPAR-gamma, leptin, UCP2, and UCP3 mRNA levels in the visceral fat and muscle of the treated animals in comparison with those measured in the saline-treated animals. These data suggest that the in vivo gene expression of FAT/CD36, GLUT4, TNF-alpha, PPAR-gamma, leptin, UCP2, and UCP3 in visceral fat and red fiber-type muscle are differently regulated by circulating lipids and that selective insulin resistance seems to favor, at least in part, a prevention of fat accumulation in tissues not primarily destined for fat storage, thus contributing to increased adiposity and the development of a prediabetic syndrome.
Tactile Interface for Navigation in Underground Mines (2014)

This paper presents the design and evaluation of a tactile vocabulary to aid navigation in an underground mine. We studied different ways to construct tactile vocabularies and assessed several tactile icons for aid navigation. After trying a dozen stimuli families, we have selected tactons based on the users' ability to perceive and process them during navigation in virtual environments to design a more usable tactile interface. Then, we performed a user experiment in a virtual simulation of an emergency situation in an underground mine. The user study shows that the tactile feedback facilitated the execution of the task. Also, the perceptual adjustment of the tactile vocabulary increased its usability as well as the memorization of its signals.
Retaining Catalyst Performance at High Temperature: The Use of a Tetraphosphine Ligand in the Highly Regioselective Hydroformylation of Terminal Olefins (2007)

Abstract A new tetraphosphine ligand has been developed and applied in the highly regioselective hydroformylation of terminal olefins. The ligand retains high performance at high temperature when compared with its bisphosphine analogue.
Converted-wave seismic exploration: Applications (2003)

Abstract Converted seismic waves (specifically, downgoing P-waves that convert on reflection to upcoming S-waves) are increasingly being used to explore for subsurface targets. Rapid advancements in both land and marine multicomponent acquisition and processing techniques have led to numerous applications for P-S surveys. Uses that have arisen include structural imaging (e.g., “seeing” through gas-bearing sediments, improved fault definition, enhanced near-surface resolution), lithologic estimation (e.g., sand versus shale content, porosity), anisotropy analysis (e.g., fracture density and orientation), subsurface fluid description, and reservoir monitoring. Further applications of P-S data and analysis of other more complicated converted modes are developing.
Spectral dependence of nonlinear absorption in ordered silver metallic nanoprism arrays (2017)

Ordered metallic nanoprism arrays have been proposed as novel and versatile systems for the observation of nonlinear effects such as nonlinear absorption. The study of the effect of the local field reinforcement on the fast optical third order nonlinear response around the Surface Plasmon Resonance is of great interest for many plasmonic applications. In this work, silver nanoprism arrays have been synthesized by the nanosphere lithography method. A low repetition rate tunable picosecond laser source was used to study the irradiance and wavelength dependence of the nonlinear absorption properties around the dipolar and quadrupolar resonances of the nanoarray with the use of the z-scan technique. The irradiance dependence of the on-resonance nonlinearity was studied, and a spectral region where nonlinear absorption is negligible was identified. This is important for the possible application of these materials in optical information processing devices.
Molecular structure and genetic stability of human hypoxanthine phosphoribosyltransferase (HPRT) gene duplications (1992)

We have determined the genetic stability of three independent intragenic human HPRT gene duplications and the structure of each duplication at the nucleotide sequence level. Two of the duplications were isolated as spontaneous mutations from the HL60 human myeloid leukemia cell line, while the third was originally identified in a Lesch-Nyhan patient. All three duplications are genetically unstable and have a reversion rate approximately 100-fold higher than the rate of duplication formation. The molecular structures of these duplications are similar, with direct duplication of HPRT exons 2 and 3 and of 6.8 kb (HL60 duplications) or 13.7 kb (Lesch-Nyhan duplication) of surrounding HPRT sequence. Nucleotide sequence analyses of duplication junctions revealed that the HL60-derived duplications were generated by unequal homologous recombination between clusters of Alu repeats contained in HPRT introns 1 and 3, while the Lesch-Nyhan duplication was generated by the nonhomologous insertion of duplicated HPRT DNA into HPRT intron 1. These results suggest that duplication substrates of different lengths can be generated from the human HPRT exon 2-3 region and can undergo either homologous or nonhomologous recombination with the HPRT locus to form gene duplications.
Interplay between intrachain and interchain interactions in semiconducting polymer assemblies: The HJ-aggregate model (2012)

A new model for analyzing the photophysics of polymer aggregates is introduced taking into account exciton motion along a polymer chain and across polymer chains. Excitonic coupling and vibronic coupling are treated on equal footing using a Holstein-based Hamiltonian represented in a multi-particle basis set. In the HJ-aggregate model the competition between intrachain (through-bond) coupling leading to Wannier-Mott excitons, and interchain (through-space) coupling leading to Frenkel excitons, is studied in detail for two model dimers: one composed of red-phase polydiacetylene (PDA) chains and the other composed of regioregular P3HT chains. The resulting photophysical properties are shown to depend critically on the relative magnitudes of the intrachain and interchain exciton bandwidths. Dominant intraband (interband) coupling favors a photophysical response resembling J-aggregates (H-aggregates). In PDA dimers, where intrachain coupling prevails, the absorption spectrum is dominated by the 0-0 peak, as is characteristic of J-aggregates. The photoluminescence (PL) spectrum displays hybrid character: the ratio of the main (0-0) band to the first vibronic sideband intensities is initially zero at T = 0 K due to the forbidden nature of the 0-0 transition, but then increases with temperature in a manner characteristic of H-aggregates, peaking when kT ≈ ΔE, where ΔE is the interchain splitting. Further increases in temperature result in a decline of the PL ratio, as in a J-aggregate. This remarkable H to J transition is also predicted for the temperature dependence of the radiative decay rate, k(rad). The maximum (peak) rate scales as, k(rad) (max)∼(W(intra)/W(inter))(1/2), where W(intra) (W(inter)) is the intrachain (interchain) exciton bandwidth. Hence, when W(intra) is sufficiently larger than W(inter) the dimer displays thermally activated superradiance. In P3HT the intrachain coupling is far weaker than in PDA making the intrachain and interchain couplings comparable in the crystalline phase. Although the absorption spectral line shape is still well-accounted for by the conventional H-aggregate model, the photoluminescence is more sensitive, with H or J behavior tunable by changes in morphology. Long range intrachain order which coincides with weaker interchain interactions induces J-aggregate behavior, while short range intrachain order and the resulting stronger interchain coupling induces H-aggregate behavior. Our predictions neatly account for the H-like dominance exhibited by the PL from spin-cast films and the J-like dominance exhibited by the PL from highly ordered P3HT nanofibers self-assembled in toluene.
Lorcainide (R 15 889), a first review. (1981)

This is a first review of lorcainide hydrochloride, a new antiarrhythmic agent with local anaesthetic activity. The antiarrhythmic actions of lorcainide are mediated by an impairment of fast sodium conductance. Pharmacologically, this drug appears effective in suppressing reentry phenomena and ectopic pacemaker activity, especially in the ventricles. Lorcainide has only negligible depressant effects on important haemodynamic parameters and its toxicity is minimal. The drug is well absorbed by the oral route and its elimination half-life is long when compared with other substances. Lorcainide-induced QRS widening is directly correlated with the plasma levels of the drug. Preliminary experience in supraventricular arrhythmias is promising but pre-excitation syndromes and the ventricular arrhythmias are the main indications for this drug since a very high response rate has been observed in these conditions. Side effects are harmless and dose-dependent, but may be clinically troublesome.
PD-1 and PD-L1 Immune Checkpoint Blockade to Treat Breast Cancer (2016)

Immune checkpoint inhibition represents a major recent breakthrough in the treatment of malignant diseases including breast cancer. Blocking the programmed death receptor-1 (PD-1) and its ligand, PD-L1, has shown impressive antitumor activity and may lead to durable long-term disease control, especially in the triple-negative subtypes of breast cancer (TNBC). Although immune checkpoint blockade is generally well tolerated, specific immune-related adverse events (irAEs) may occur. This review summarizes the clinical efficacy, perspectives, and future challenges of using PD-1/PD-L1-directed antibodies in the treatment of breast cancer.
Management forecasting (1992)

Examines a number of forecasting techniques used by managers to control operations, emphasising especially the potential dangers of subjective forecasting. Discusses qualitative analysis, in particular the commonly used Delphi method . Considers forecasting performed bymeans of causal factor identification, time serial analysis, and quantitative techniques. Suggests that forecasting demands the use of management services practitioners.
The parameterized Round-Robin partitioned algorithm for parallel external sort (2002)

In this paper, we present a new parameterized parallel sort algorithm, called Round-Robin Partitioned (or RRP), for the message passing (shared-nothing) architecture. This is a parameterized sort algorithm because a parameter is provided which can be used to determine the amount of memory used and to allocate differing amounts of work to different sets of sites. We utilize pipelining to hide disk I/O time, exploit high degrees of parallelism at all phases, apply sampling to determine the partition key values and use less memory than previous known methods while repairing the minimum number of physical I/Os. The basic version of the RRP algorithm is simple in terms of coding and complexity. It does not require disk I/O parallelism or data prefetch within a single process. We develop an analytical model for our algorithm and compare our sort algorithm with four other classes of external parallel sort algorithms. The RRP algorithm are shown to be superior to the other algorithms for almost all configurations.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Building Surrogate Models Based on Detailed and Approximate Simulations (2005)

Preliminary design of a complex system often involves exploring a broad design space. This may require repeated use of computationally expensive simulations. To ease the computational burden, surrogate models are built to provide rapid approximations of more expensive models. However, the surrogate models themselves are often expensive to build because they are based on repeated experiments with computationally expensive simulations. An alternative approach is to replace the detailed simulations with simplified approximate simulations, thereby sacrificing accuracy for reduced computational time. Naturally, surrogate models built from these approximate simulations are also imprecise. A strategy is needed for improving the precision of surrogate models based on approximate simulations without significantly increasing computational time. In this paper, a new approach is taken to integrate data from approximate and detailed simulations to build a surrogate model that describes the relationship between output and input parameters. Experimental results from approximate simulations form the bulk of the data, and they are used to build a model based on a Gaussian process. The fitted model is then “adjusted” by incorporating a small amount of data from detailed simulations to obtain a more accurate prediction model. The effectiveness of this approach is demonstrated with a design example involving cellular materials for an electronics cooling application. The emphasis is on the method and not on the results per se.
Spectroscopic Characterization Of Biliary Tract Tissues In-vivo To Assist Laparoscopic Cholecystectomy (2007)

Laparoscopic Cholecystectomy is a surgical method for removal of gallbladder when it is diseased with gall stones. Almost 750,000 people are affected with this disease annually in USA. Gall bladder is removed by placing an incision on the cystic duct. This duct is totally embedded in fat (which is a few mm thick) in most of the cases and it becomes a huge problem decreasing the visual capability of the surgeon to distinctly locate the duct. \nNear Infrared Spectroscopy (NIRS) can solve the fuzziness as it penetrates in a few mm thick tissues. NIRS is one of the simplest techniques for studying the physiological properties of the biological tissue. Light delivered into the tissue undergoes multiple scattering and absorption, and reflects back carrying quantitative information. Light attenuation in the Near Infrared Red (700-900nm) region is relatively less by tissue chromophores thus allowing to study their variation in this wavelength region.
Bridging Interference Barriers in Self-Organized Synchronization (2012)

We consider self-organized synchronization in a wireless network, in a setting where there may be transmissions in the network interfering with the reception of synchronization pulses. Persistent existence of interference may prevent synchronization pulses from being heard, which potentially divides the network to multiple connected components separated by interference barriers. We investigate methods to coordinate the synchronization transmission and/or reception strategies within connected components, so that they may grow by bridging barriers. Symmetry in the self-organized connected component growth is broken by synchronization IDs, with a resolution mechanism allowing a finite ID space. Simulation results in a random network with distance-dependent path loss a represented. The coordination methods increase the probability of convergence from multiple connected components to a single connected component covering the whole network significantly.
Electronic plants (2015)

The roots, stems, leaves, and vascular circuitry of higher plants are responsible for conveying the chemical signals that regulate growth and functions. From a certain perspective, these features are analogous to the contacts, interconnections, devices, and wires of discrete and integrated electronic circuits. Although many attempts have been made to augment plant function with electroactive materials, plants' "circuitry" has never been directly merged with electronics. We report analog and digital organic electronic circuits and devices manufactured in living plants. The four key components of a circuit have been achieved using the xylem, leaves, veins, and signals of the plant as the template and integral part of the circuit elements and functions. With integrated and distributed electronics in plants, one can envisage a range of applications including precision recording and regulation of physiology, energy harvesting from photosynthesis, and alternatives to genetic modification for plant optimization.
Synthesis of (<i>S</i>)- and (<i>R</i>)-3-Hydroxy-4-butanolide and (2<i>S</i>,4<i>S</i>)-, (2<i>R</i>,4<i>S</i>)-, (2<i>S</i>,4<i>R</i>)-, and (2<i>R</i>,4<i>R</i>)-2-Hydroxy-4-hydroxymethyl-4-butanolide and Their Satiety and Hunger Modulating Activities (1988)

Abstract Two endogenous γ-lactones, 3-hydroxy-4-butanolide (1) and 2-hydroxy-4-hydroxymethyl-4-butanolide (2) have been identified as substances that enhance, respectively, satiety and hunger by their effects on the feeding behavior and the central neurons of rats. To determine the stereochemistry of the physiologically active isomers, all the stereoisomers of these two lactones were synthesized and their effects on the feeding behavior and humoral factors were assessed by infusion into the rat third cerebroventricle. Among four isomers, (2S,4S)-2-hydroxy-4-hydroxymethyl-4-butanolide (2a) was most effective in elicitating the feeding and caused potent hypoglycemia with hyperinsulinemia. (S)-3-Hydroxy-4-butanolide (1a) suppressed the food intake more potently than the antipode and caused humoral responses reciprocal to those of 2a. From these facts, it was concluded that 1a and 2a are physiologically active forms for conveying intrinsic signals of satiety and hunger to neurons in the hypothalamus.
Survival and body composition of normal and hypothalamic obese rats in acute starvation (1960)

Female hypothalamic obese rats contained approximately 240% more fat, 10% more protein and 18% more water than did their controls, however ratio total water/fat-free mass remained within normal limits in this frank obesity. At death from starvation, the water, fat-free mass and protein compartments were significantly smaller than those of the controls, the fat compartments were not significantly different. Control rats survived starvation for 16.4 ± 1.3 days, obese rats 42.7 ± 1.8 days ( P < .001). The resting metabolic rates of normal and obese rats in the fed state were not different and both fell gradually throughout starvation. The prolonged survival of obese rats is due primarily to their excess reserve of energy and not to alterations in metabolic rate. As in the fed state, hypothalamic obese rats drank less water during starvation than did the controls. This is thought to result from direct interference with hypothalamic elements regulating thirst and the spontaneous consumption of water.
PCR Amplification of the Mitochondrial DNA Minisatellite Region to Detect Schistosoma mansoni Infection in Biomphalaria glabrata Snails (1997)

Schistosoma infection in Biomphalaria glabrata can be detected by either exposing snails to light to induce cercarial shedding or by squeezing them between glass slides to detect parasites in the digestive gland and other regions. The methods available are inefficient for identification of prepatent infections and do not allow the diagnosis of infection in snails that die before arriving in the laboratory. Furthermore, infection is undetectable after migration of sporocysts from the head-foot region of the snail. We examined the use of polymerase chain reaction (PCR) amplification of minisatellite repeats from Schistosoma mansoni mitochondrial DNA (mtDNA) to identify snail infection. We found that amplification of mtDNA under low stringency conditions (LS-PCR) allowed for the identification of specific S. mansoni infection in Biomphalaria snails. To confirm these results, specific amplification reactions were performed using 2 sets of primers that allowed for the diagnosis of infection and an internal control of the reaction (multiplex PCR). Results obtained using multiplex PCR demonstrated the ability of the assay to detect S. mansoni-specific infection. Thus, LS-PCR as well as specific multiplex PCR allow for the detection of prepatent infections and show high specificity for S. mansoni in comparison with other trematode infections in either living or dead snails.
Central retinal venous pulsation pressure in different stages of primary open-angle glaucoma (2014)

ClinicalTrials.gov ID: NCT01503996.