gebhart/patrepeval huggingface dataset:
Reduced MHC variation in a threatened tuatara species (2008)

Abstract The relationship between neutral and adaptive genetic diversity is important to understand in assessing the implications of a population bottleneck. Fitness‐related genes, such as those of the major histocompatibility complex (MHC), may be influenced by selection, and so retain diversity even when it is lost at neutral markers. We measured MHC class I variation in an archaic reptile species Sphenodon guntheri [North Brother Island (NBI) tuatara], which naturally occurs on one 4 ha island in Cook Strait, New Zealand, and has low levels of microsatellite diversity. MHC variation in S. guntheri was compared with microsatellite DNA variation, and with MHC variation in a large population of Sphenodon punctatus (Cook Strait tuatara) on Stephens Island. The NBI population shows significantly decreased levels of genetic diversity compared with the Stephens Island population. Only three different MHC sequences and three genotypes were found on NBI, compared with 15 sequences and 21 genotypes in a similar sample size from Stephens Island. Two sequences appear to be unique to the NBI population. The assortment of sequence variants into genotypes suggests strong gametic disequilibrium between two MHC class I loci in S. guntheri , and only two haplotypes that were present in Hardy–Weinberg proportions were identified. MHC diversity in NBI tuatara appears to be largely influenced by genetic drift, consistent with a recent population bottleneck. This may compromise the ability of this population to respond to novel disease threats.
Molecular mechanisms of enhancing porcine granulosa cell proliferation and function by treatment in vitro with anti-inhibin alpha subunit antibody (2015)

These results suggest that immunoneutralization of inhibin bioactivity, through augmentation of the activin and gonadotropin receptor signaling pathways and regulation of gene expression, permits the development of healthy and viable granulosa cells. These molecular mechanisms help to explain the enhanced ovarian follicular development observed following inhibin immunization in animal models.
Chemical Structure, Conjugation, and Cross-Reactivity of<i>Bacillus pumilus</i>Sh18 Cell Wall Polysaccharide (2004)

Bacillus pumilus strain Sh18 cell wall polysaccharide (CWP), cross-reactive with the capsular polysaccharide of Haemophilus influenzae type b, was purified and its chemical structure was elucidated using fast atom bombardment mass spectrometry, nuclear magnetic resonance techniques, and sugar-specific degradation procedures. Two major structures, 1,5-poly(ribitol phosphate) and 1,3-poly(glycerol phosphate), with the latter partially substituted by 2-acetamido-2-deoxy-alpha-galactopyranose (13%) and 2-acetamido-2-deoxy-alpha-glucopyranose (6%) on position O-2, were found. A minor component was established to be a polymer of -->3-O-(2-acetamido-2-deoxy-beta-glucopyranosyl)-1-->4-ribitol-1-OPO3-->. The ratios of the three components were 56, 34, and 10 mol%, respectively. The Sh18 CWP was covalently bound to carrier proteins, and the immunogenicity of the resulting conjugates was evaluated in mice. Two methods of conjugation were compared: (i) binding of 1-cyano-4-dimethylaminopyridinium tetrafluoroborate-activated hydroxyl groups of the CWP to adipic acid dihydrazide (ADH)-derivatized protein, and (ii) binding of the carbodiimide-activated terminal phosphate group of the CWP to ADH-derivatized protein. The conjugate-induced antibodies reacted in an enzyme-linked immunosorbent assay with the homologous polysaccharide and with a number of other bacterial polysaccharides containing ribitol and glycerol phosphates, including H. influenzae types a and b and strains of Staphylococcus aureus and Staphylococcus epidermidis.
Plasma polymerization of fluorocarbons in rf capacitively coupled diode system (1981)

Work is reviewed which deals with the interrelationship between plasma etching and plasma polymerization, with emphasis on the plasma-surface interactions leading to polymerization. Particular reference is made to work done in this laboratory relating to the synthesis of metal containing fluoropolymers by simultaneous plasma etching and polymerization in the same system. The polymer deposition rate, at the grounded electrode in a rf capacitively coupled diode reactor configuration, is shown to be strongly dependent on the excitation electrode material, as well as the fluorine/carbon stoichiometry of the injected fluorocarbon. Addition of oxygen to a fluorocarbon plasma enhances etching and reduces polymerization, thus increasing the metal content of the polymer films. Addition of hydrogen on the other hand has the opposite effect. In all cases discussions are presented of the film structures as well as the most likely precursors in the gas phase which lead to polymerization.
Mechanism of Repetitive Monomorphic Ventricular Tachycardia (1995)

Although the arrhythmia occurs at rest, the constellation of findings in idiopathic VT that is characterized by RMVT is consistent with the mechanism of cAMP-mediated triggered activity. Therefore, the spectrum of VT resulting from this mechanism includes not only paroxysmal exercise-induced VT but also RMVT.
Chronic progressive HIV-1 infection is associated with elevated levels of myeloid-derived suppressor cells (2012)

We conclude that chronic uncontrolled HIV-infection is associated with elevated levels of MDSC, which potentially contribute to the impaired T-cell responses characteristic for the progressive disease stage.
Adenosine A2 Receptor Occupancy Regulates Stimulated Neutrophil Function via Activation of a Serine/Threonine Protein Phosphatase (1996)

Adenosine modulates generation of superoxide anion by neutrophils via occupancy of specific adenosine A2A receptors. However, the intracellular signal transduction pathways by which occupancy of neutrophil adenosine A2A receptors inhibits superoxide anion generation (O2.-) are not well understood. We, therefore, tested the hypothesis that signaling at polymorphonuclear leukocyte (PMN) adenosine receptors proceeds via activation of a serine/threonine protein phosphatase (pp). Both the specific pp1 inhibitor calyculin A (10 nM) and the pp2A inhibitor okadaic acid (10 microM) enhanced O2.- generation (185 +/- 24 and 189 +/- 35% of control, respectively, p < 0.0001 for both, n = 8), as reported previously. Calyculin A, but not okadaic acid, completely reversed inhibition of stimulated O2.- generation by the adenosine A2 receptor agonist 5'-N-ethylcarboxamidoadenosine (NECA; IC50 = 30 nM; p < 0.0001, analysis of variance). Calyculin A also reversed the adenosine receptor-mediated desensitization of bound chemoattractant receptors in neutrophils. Treatment of PMNs with NECA increased the pp1 activity of crude membrane preparations in a time- and dose-dependent fashion (EC50 = 40 nM; p < 0.001, analysis of variance, n = 5). NECA inhibited cytosolic protein phosphatase activity by 78 +/- 12% (p < 0.003, n = 6) but did not shift pp1 catalytic subunit from cytosol to plasma membrane. Similar changes were observed in neutrophil cytoplasts depleted of organelles and nucleus. Moreover, the selective protein kinase A inhibitor KT5720 (10 microM) reversed the capacity of dibutyryl cAMP but not NECA to increase pp1 activity (p < 0.01, n = 5) in keeping with its effects on O2.- generation. Western blot analysis of PMN subcellular fractions demonstrated the presence of pp1alpha and pp1gamma1 but not pp1gamma2 isotypes in both cytosol and plasma membrane but not in azurophil or specific granules. We conclude from these studies that signal transduction by adenosine in PMN proceeds via a novel pathway: cAMP-independent activation of a serine/threonine protein phosphatase in the plasma membrane.
ACETYL‐ AND PSEUDOCHOLINESTERASE ACTIVITIES IN SYMPATHETIC GANGLIA OF RATS<sup>1</sup> (1968)

Abstract —The quantitative method of E llman , C ourtney , A ndres and F eatherstone (1961) was adapted to a differential assay for the determination of acetyl‐ and pseudocholinesterase activities of sympathetic ganglia of rats. The activities of the cholinesterases of superior cervical, stellate and thoracic chain ganglia and of the abdominal ganglionic complexes in apposition to the superior mesenteric and coeliac arteries (superior mesenteric, coeliac and cardiac ganglia) were measured. B.W.284C51 dibromide, 5 × 10 −5 m , and ethopropazine hydrochloride, 3·15 × 10 −5 m , were employed to inhibit selectively acetyl‐ and pseudocholinesterases, respectively. Linearity was shown to be maintained with enzyme concentrations corresponding to 0·12‐0·5 mg of ganglion (wet wt.)/incubation. Under the experimental conditions of this assay, the rates of the reaction of ganglionic acetyl‐ and pseudocholinesterases were linear for time periods greater than those employed for calculating the rates of hydrolysis in the homogenates of sympathetic ganglia. Several experimental approaches were used to ascertain the specificity of the inhibitors and of the reaction. Of the total cholinesterase activity of sympathetic ganglia of rats, 55‐63 per cent was due to acetylcholinesterase and 31‐39 per cent to pseudocholinesterase. On the basis of the specific enzyme activity, superior cervical, stellate and superior mesenteric ganglia contained higher acetyl‐ and pseudocholinesterase activities than did thoracic chain, coeliac and cardiac (abdominal) ganglia. The specific activity of acetylcholinesterase was similar in rat and cat superior cervical ganglia and sympathetic cervical trunks while the pseudocholinesterase activity of these two tissues was somewhat lower in cats than in rats.
A Novel Non-contact Heart Rate Monitor Using Impulse-Radio Ultra-Wideband (IR-UWB) Radar Technology (2018)

We discovered that impulse-radio ultra-wideband (IR-UWB) radar could recognize cardiac motions in a non-contact fashion. Therefore, we measured the heart rate (HR) and rhythms using an IR-UWB radar sensor and evaluated the validity and reliability of the measurements in comparison to electrocardiography. The heart beats were measured in 6 healthy volunteers (18 samples) with normal sinus rhythm (NSR) and 16 patients (36 samples) with atrial fibrillation (AF) using both an IR-UWB radar sensor and electrocardiography simultaneously. The participants hold their breath for 20 seconds during the data acquisition. In subjects with NSR, there was excellent agreement of HR (intraclass correlation coefficient [ICC] 0.856), average R-R interval (ICC 0.997) and individual R-R intervals between the two methods (ICC 0.803). In subjects with AF, HR (ICC 0.871) and average R-R interval (ICC 0.925) from the radar sensor also agreed well with those from electrocardiography, though there was a small disagreement in the individual R-R intervals between the two methods (ICC 0.697). The rhythms computed by the signal-processing algorithm showed good agreement between the two methods (Cohen's Kappa 0.922). The IR-UWB radar sensor is precise and accurate for assessing HR and rhythms in a non-contact fashion.
Reliable and Efficient Image Cropping: A Grid Anchor based Approach (2019)

Image cropping aims to improve the composition as well as aesthetic quality of an image by removing extraneous content from it. Existing image cropping databases provide only one or several human-annotated bounding boxes as the groundtruth, which cannot reflect the non-uniqueness and flexibility of image cropping in practice. The employed evaluation metrics such as intersection-over-union cannot reliably reflect the real performance of cropping models, either. This work revisits the problem of image cropping, and presents a grid anchor based formulation by considering the special properties and requirements (e.g., local redundancy, content preservation, aspect ratio) of image cropping. Our formulation reduces the searching space of candidate crops from millions to less than one hundred. Consequently, a grid anchor based cropping benchmark is constructed, where all crops of each image are annotated and more reliable evaluation metrics are defined. We also design an effective and lightweight network module, which simultaneously considers the region of interest and region of discard for more accurate image cropping. Our model can stably output visually pleasing crops for images of different scenes and run at a speed of 125 FPS. Code and dataset are available at: https://github.com/HuiZeng/Grid-Anchor-based-Image-Cropping.
Increased electron demand in the solvolysis of secondary 2-norbornyl tosylates (1978)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTIncreased electron demand in the solvolysis of secondary 2-norbornyl tosylatesJoseph B. Lambert and H. Wayne MarkCite this: J. Am. Chem. Soc. 1978, 100, 8, 2501–2505Publication Date (Print):April 1, 1978Publication History Published online1 May 2002Published inissue 1 April 1978https://pubs.acs.org/doi/10.1021/ja00476a038https://doi.org/10.1021/ja00476a038research-articleACS PublicationsRequest reuse permissionsArticle Views140Altmetric-Citations22LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Novelty detection with multivariate Extreme Value Theory, part II: An analytical approach to unimodal estimation (2009)

Extreme Value Theory (EVT) describes the distribution of data considered extreme with respect to some generative distribution, effectively modelling the tails of that distribution. In novelty detection, we wish to determine if data are ldquonormalrdquo with respect to some model of normality. If that model consists of generative distributions, then EVT is appropriate for describing the behaviour of extrema generated from the model, and can be used to separate ldquonormalrdquo areas from ldquoabnormalrdquo areas of feature space in a principled manner. In a companion paper, we show that existing work in the use of EVT for novelty detection does not accurately describe the extrema of multimodal, multivariate distributions and propose a numerical method for overcoming such problems. In this paper, we introduce an analytical approach to obtain closed-form solutions for the extreme value distributions of multivariate Gaussian distributions and present an application to vital-sign monitoring.
Noncontact Monitoring of Cardiorespiratory Activity by Electromagnetic Coupling (2013)

In this paper, the method of noncontact monitoring of cardiorespiratory activity by electromagnetic coupling with human tissue is investigated. Two measurement modalities were joined: an inductive coupling sensor based on magnetic eddy current induction and a capacitive coupling sensor based on displacement current induction. The system's sensitivity to electric tissue properties and its dependence on motion are analyzed theoretically as well as experimentally for the inductive and capacitive coupling path. The potential of both coupling methods to assess respiration and pulse without contact and a minimum of thoracic wall motion was verified by laboratory experiments. The demonstrator was embedded in a chair to enable recording from the back part of the thorax.
Regulation by EGF is maintained in an overexpressed chimeric EGFR/<i>neu</i> receptor tyrosine kinase (1990)

The effects of a ligand regulated neu tyrosine kinase were examined in NIH 3T3 cells. A chimeric construct encoding the human EGF receptor extracellular domain fused to the tyrosine kinase domain of the rat neu cDNA was expressed under the transcriptional control of the Moloney murine leukemia virus LTR promoter. This resulted in higher levels of expression of the chimeric receptor than were previously obtained from the SV40 virus early promoter in the same cells. The chimeric receptor showed strict ligand-dependent tyrosine kinase and signal transducing activities for the induction of growth-regulated biochemical activities and DNA synthesis in resting cells. The ligand-activated cells became morphologically transformed and grew in agar in the presence of EGF and TGF beta as efficiently as did the ligand-independent neu oncogene-transformed cells. Our results establish similarities between the signal pathways of the EGF receptor and the neu tyrosine kinase.
MASH1 activates expression of the paired homeodomain transcription factor Phox2a, and couples pan-neuronal and subtype-specific components of autonomic neuronal identity (1998)

We have investigated the genetic circuitry underlying the determination of neuronal identity, using mammalian peripheral autonomic neurons as a model system. Previously, we showed that treatment of neural crest stem cells (NCSCs) with bone morphogenetic protein-2 (BMP-2) leads to an induction of MASH1 expression and consequent autonomic neuronal differentiation. We now show that BMP2 also induces expression of the paired homeodomain transcription factor Phox2a, and the GDNF/NTN signalling receptor tyrosine kinase c-RET. Constitutive expression of MASH1 in NCSCs from a retroviral vector, in the absence of exogenous BMP2, induces expression of both Phox2a and c-RET in a large fraction of infected colonies, and also promotes morphological neuronal differentiation and expression of pan-neuronal markers. In vivo, expression of Phox2a in autonomic ganglia is strongly reduced in Mash1 -/- embryos. These loss- and gain-of-function data suggest that MASH1 positively regulates expression of Phox2a, either directly or indirectly. Constitutive expression of Phox2a, by contrast to MASH1, fails to induce expression of neuronal markers or a neuronal morphology, but does induce expression of c-RET. These data suggest that MASH1 couples expression of pan-neuronal and subtype-specific components of autonomic neuronal identity, and support the general idea that identity is established by combining subprograms involving cascades of transcription factors, which specify distinct components of neuronal phenotype.
Spirometry: step by step (2012)

Educational aims To give an overview of what spirometry is, how to perform it and how to interpret it. To discuss the quality criteria to produce acceptable and reproducible results. To discuss the use of spirometry in the workplace. Summary Spirometry is easy to perform once trained and can be performed anywhere. It is useful for detecting early change and disease progression. Quality is important to ensure useful and reproducible results, otherwise results may be incorrectly interpreted. Training from a reputable centre should be undertaken to ensure the measures are understood as well as how to get the best results out of the patient.
Ion selective liquid membrane electrode for the assay of lithium in blood serum (1986)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTIon selective liquid membrane electrode for the assay of lithium in blood serumErich. Metzger, Daniel. Ammann, Robert. Asper, and Wilhelm. SimonCite this: Anal. Chem. 1986, 58, 1, 132–135Publication Date (Print):January 1, 1986Publication History Published online1 May 2002Published inissue 1 January 1986https://pubs.acs.org/doi/10.1021/ac00292a032https://doi.org/10.1021/ac00292a032research-articleACS PublicationsRequest reuse permissionsArticle Views258Altmetric-Citations58LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Future Energy Systems: Integrating Renewable Energy Sources into the Smart Power Grid Through Industrial Electronics (2010)

This paper discusses about integrating renewable energy sources into the smart power grid through industrial electronics. This paper discusses photovoltaic power, wind energy conversion, hybrid energy systems, and tidal energy conversion.
Improved Carrier Mobility in Few-Layer MoS<sub>2</sub> Field-Effect Transistors with Ionic-Liquid Gating (2013)

We report the fabrication of ionic liquid (IL)-gated field-effect transistors (FETs) consisting of bilayer and few-layer MoS2. Our transport measurements indicate that the electron mobility μ ≈ 60 cm(2) V(-1) s(-1) at 250 K in IL-gated devices exceeds significantly that of comparable back-gated devices. IL-FETs display a mobility increase from ≈ 100 cm(2) V(-1) s(-1) at 180 K to ≈ 220 cm(2) V(-1) s(-1) at 77 K in good agreement with the true channel mobility determined from four-terminal measurements, ambipolar behavior with a high ON/OFF ratio >10(7) (10(4)) for electrons (holes), and a near ideal subthreshold swing of ≈ 50 mV/dec at 250 K. We attribute the observed performance enhancement, specifically the increased carrier mobility that is limited by phonons, to the reduction of the Schottky barrier at the source and drain electrode by band bending caused by the ultrathin IL dielectric layer.
Oxidation effects on magnetic properties in CoCr sputtered films (1984)

Annealing effects on magnetic properties of CoCr sputtered films were investigated. The anneal in air near 400°C causes the considerable increase of the saturation magnetization M <inf xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">s</inf> , the perpendicular coercivity H <inf xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">c</inf> ( <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">\perp</tex> ) and the perpendicular anisotropy K <inf xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">u</inf> . These increments were interpreted by the formation of antiferromagnetic Cr <inf xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</inf> O <inf xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</inf> surrounding column boundaries, which was supported by the depth profiles of AES and the spectrum of ESCA. Furthermore, the variations in magnetic properties are fairly suppressed by coating the film surface with a SiO <inf xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</inf> or AlN layer.