gebhart/patrepeval huggingface dataset:
The Effect of Dietary Probiotic Supplementation on Tibial Bone Characteristics and Strength in Broilers (2006)

A 6-wk study with 50 birds was conducted to investigate the effects of a dietary supplemental probiotic on morphometric parameters and yield stress of the tibia. Twenty-five 1-d-old broiler chicks were assigned to a control or an experimental diet containing Bacillus licheniformis and Bacillus subtilis (BioPlus 2B, CHR Hansen BioSystems, Denmark, Ugur Ecza Deposu, Turkiye Distributoru, Adapazari 41400, Turkey; each containing 2.3 x 10(8) cfu/g of spores) supplemented to the starter and finisher diets at 500 g/1000 kg of feed. Each diet was replicated 5 times with 5 birds in each replicate. Tibiotarsi weight, length, and weight/length index, robusticity index, diaphysis diameter, modulus of elasticity, yield stress parameters, and percentage Ca content were not affected by the dietary supplementation of probiotic, whereas thickness of the medial and lateral wall of the tibia, tibiotarsal index, percentage ash, and P content were significantly improved by the probiotic. Medullary canal diameter of the tibia of the birds fed the control diet was significantly greater than that of birds fed the probiotic diet. There was no treatment impact on live performance of the birds throughout the 6-wk feeding trial.
Open environments and object-oriented methods: the way forward in computer-aided control system design (2002)

Two current trends in the computer industry are towards open systems and object-oriented methods. The relevance and significance of these for computer-aided control system design are examined. It is observed that, compared with computer-aided software engineering, there is no open system policy and a lack of design environments. A variation on the open environment for computer-aided software engineering, based on a service-oriented framework and tools, is proposed to rectify the situation, and a reference model is given. The fundamentals of object-oriented methods are described, and their impact on each part of the proposed environment is considered. It is concluded that the combination of an open environment and object-oriented methods gives an opportunity for progress in computer-aided control system design that needs to be grasped if the world-wide control community is to benefit.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Emerging Roles of Nitric Oxide in Inflammation (1996)

The short-lived, highly reactive NO radical arises in two ways: 1) a rapidly triggered process well suited for homeostatic fine-tuning of blood pressure and 2) a prolonged high-level production best suited for microbicidal activity. Roles in vascular "leakiness" and leukocyte extravasation are also emerging. Continued investigation may yield new therapies addressing individual facets of inflammation.
Chromium (VI) Activates Ataxia Telangiectasia Mutated (ATM) Protein (2003)

The ataxia telangiectasia mutated (ATM) protein plays a central role in early stages of DNA double strand break (DSB) detection and controls cellular responses to this damage. Although hypersensitive to ionizing radiation-induced clonogenic lethality, ataxia telangiectasia cells are paradoxically deficient in their ability to undergo ionizing radiation-induced apoptosis. This contradiction illustrates the complexity of the central role of ATM in DNA damage response and the need for further understanding. Certain hexavalent chromium (Cr(VI)) compounds are implicated as occupational respiratory carcinogens at doses that are both genotoxic and cytotoxic. Cr(VI) induces a broad spectrum of DNA damage, but Cr(VI)-induced DSBs have not been reported. Here, we examined the role of ATM in the cellular response to Cr(VI) and found that Cr(VI) activates ATM. We also show that physiological targets of ATM, p53 Ser-15 and Chk2 Thr-68, were phosphorylated by Cr(VI) exposure in an ATM-dependent fashion. We found that ATM-/- cells were markedly resistant to Cr(VI)-induced apoptosis but considerably more sensitive to Cr(VI)-induced clonogenic lethality than wild type cells, indicating that resistance to Cr(VI)-induced apoptosis did not confer a selective survival advantage. However, analysis of long term growth arrest revealed a striking difference: ATM-/- cells were markedly less able to recover from Cr(VI)-induced growth arrest. This indicates that terminal growth arrest is the fate of these apoptosis-resistant cells. In summary, ATM is involved in cellular response to a complex genotoxin that may not directly induce DSBs. Our data suggest that ATM is a major signal initiator for genotoxin-induced apoptosis but, paradoxically, also contributes to maintenance of cell survival by facilitating recovery/escape from terminal growth arrest. The results also strongly suggest that terminal growth arrest is not merely an extended or even irreversible form of checkpoint arrest, but instead an independent and unique cell fate pathway.
Autolysis-resistant peptidoglycan of anomalous composition in amino-acid-starved Escherichia coli (1988)

Nongrowing Escherichia coli deprived of an essential amino acid continued to produce peptidoglycan at a rate approximately 30% of that of growing cells. The composition of this peptidoglycan was very different from that of growing cells and resembled that of peptidoglycan left undegraded during partial autolysis of the bacteria. Synthesis of this peptidoglycan of anomalous composition began at once upon the removal of the amino acid from the medium. Fifteen minutes of amino acid deprivation was sufficient to virtually completely prevent penicillin-induced autolytic wall degradation in vivo. During this time, although the specific activities of soluble and membrane-bound hydrolytic transglycosylases and endopeptidases remained high, the peptidoglycan produced showed decreased sensitivity to degradation in vitro. After more extensive (2-h) starvation, triggering of autolysis by chaotropic agents was also blocked. Autolysis in growing cells may be selective for peptidoglycan representing the cylindrical portion of the sacculus. It is suggested that at least part of the mechanism of the well-known lysis resistance of nongrowing E. coli is related to the deposition of structurally anomalous and relatively autolysin-resistant peptidoglycan at some strategically located sites on the bacterial surface.
Frame synchronisation for optical fibre digital PPM (1992)

An appropriate random variable is incorporated into an original model to represent the stochastic data sequence encoded. It is shown that unlike free space PPM, optical fibre exhibits a discrete component at the frame rate that can be used for synchronisation. The modulation index can be employed to enhance this component. Consideration is given to the nature of the dispersive optical fibre channel. Original practical results measured on an experimental system are shown to be in agreement with the theoretical predictions. The paper concludes by identifying a set of PPM parameters that optimises frame synchronisation.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
ORIGINAL RESEARCH Vasospasm after Subarachnoid Hemorrhage: Utility of Perfusion CT and CT Angiography on Diagnosis and Management (2006)

METHODS: We retrospectively identified 27 patients with acute subarachnoid hemorrhage who had undergone CTA/PCT, DSA, and transcranial Doppler (TCD) ultrasonography within a time interval of 12 hours of one another. The patients’ charts were reviewed for treatment of vasospasm. CTA, PCT, TCD, and DSA examinations were independently reviewed and quantified for vasospasm. PCT thresholds, CTA findings, noncontrast CT (NCT) hypodensities, and TCD thresholds were evaluated for accuracy, sensitivity, and specificity, as well as for negative (NPV) and positive predictive values (PPV) in the prediction of angiographic vasospasm and endovascular treatment, considering DSA as the gold standard. RESULTS: Thirty-five CTA/PCT, TCD, and DSA examinations were performed on these 27 patients. A total of 123 arterial territories in 11 patients demonstrated angiographic vasospasm. Six patients underwent endovascular therapy. CTA qualitative assessment and PCT-derived mean transit time (MTT) with a threshold at 6.4 seconds represented the most accurate (93%) combination for the diagnosis of vasospasm, whereas MTT considered alone represented the most sensitive parameter (NPV, 98.7%). A cortical regional cerebral blood flow value 39.3 (mL 100 g 1 min 1 ) represented the most accurate (94.8%) indicator for endovascular therapy. PCT had significantly higher PPV (89.9%) than TCD (62.9%). CONCLUSIONS: A CT survey combining CTA and PCT represents an accurate screening test in patients with suspected vasospasm. However promising, the value of PCT for selecting the best management strategy in such patients will need to be further investigated.
A Role for APPL1 in TLR3/4-Dependent TBK1 and IKKε Activation in Macrophages (2015)

Endosomes have important roles in intracellular signal transduction as a sorting platform. Signaling cascades from TLR engagement to IRF3-dependent gene transcription rely on endosomes, yet the proteins that specifically recruit IRF3-activating molecules to them are poorly defined. We show that adaptor protein containing a pleckstrin-homology domain, a phosphotyrosine-binding domain, and a leucine zipper motif (APPL)1, an early endosomal protein, is required for both TRIF- and retinoic acid-inducible gene 1-dependent signaling cascades to induce IRF3 activation. APPL1, but not early endosome Ag 1, deficiency impairs IRF3 target gene expression upon engagement of both TLR3 and TLR4 pathways, as well as in H1N1-infected macrophages. The IRF3-phosphorylating kinases TBK1 and IKKε are recruited to APPL1 endosomes in LPS-stimulated macrophages. Interestingly, APPL1 undergoes proteasome-mediated degradation through ERK1/2 to turn off signaling. APPL1 degradation is blocked when signaling through the endosome is inhibited by chloroquine or dynasore. Therefore, APPL1 endosomes are critical for IRF3-dependent gene expression in response to some viral and bacterial infections in macrophages. Those signaling pathways involve the signal-induced degradation of APPL1 to prevent aberrant IRF3-dependent gene expression linked to immune diseases.
The basic helix–loop–helix domain of maize R links transcriptional regulation and histone modifications by recruitment of an EMSY-related factor (2007)

The control of anthocyanin accumulation in maize by the cooperation of the basic helix-loop-helix (bHLH) protein R with the MYB transcription factor C1 provides one of the best examples of plant combinatorial transcriptional control. Establishing the function of the bHLH domain of R has remained elusive, and so far no proteins that interact with this conserved domain have been identified. We show here that the bHLH domain of R is dispensable for the activation of transiently expressed genes yet is essential for the activation of the endogenous genes in their normal chromatin environment. The activation of A1, one of the anthocyanin biosynthetic genes, is associated with increased acetylation of histone 3 (H3) at K9/K14 in the promoter region to which the C1/R complex binds. We identified R-interacting factor 1 (RIF1) as a nuclear, AGENET domain-containing EMSY-like protein that specifically interacts with the bHLH region of R. Knockdown experiments show that RIF1 is necessary for the activation of the endogenous promoters but not of transiently expressed genes. ChIP experiments established that RIF1 is tethered to the regulatory region of the A1 promoter by the C1/R complex. Together, these findings describe a function for the bHLH domain of R in linking transcriptional regulation with chromatin functions by the recruitment of an EMSY-related factor.
Lung contour detection in chest radiographs using <inline-formula>1-<roman>D</roman></inline-formula> convolution neural networks (1999)

The <i>Journal of Electronic Imaging</i> (JEI), copublished bimonthly with the Society for Imaging Science and Technology, publishes peer-reviewed papers that cover research and applications in all areas of electronic imaging science and technology.
Measurement of urea kinetics in humans: a validation of stable isotope tracer methods (1984)

To define the importance of an accurate priming dose for measurement of urea production using a primed, short-duration (e.g., 4 h) infusion of labeled urea, [18O]- and [13C]ureas were infused simultaneously at two different prime-to-infusion (P/I) doses into five young adult men. The measured mean (+/-SE) urea production rates were 261 +/- 12 and 509 +/- 25 mumol X kg-1 X h-1 for P/I = 12.6-h and 5.0-h priming doses, respectively. In a second series of studies, a single dose of [18O]urea tracer was administered intravenously to four subjects, and the urea production rate was determined from the plasma urea tracer disappearance curve obtained over the following 6 h by fitting the data to a two-exponent curve. The mean urea production rate was 224 +/- 14 mumol X kg-1 X h-1. Because the fractional turnover of the body urea pool is slow, the priming dose strongly influences the "apparent" plasma urea enrichment plateau and, therefore, the measured urea production rate during short-duration infusions. Alternatively, the single-dose protocol can be applied to measure human urea production accurately in periods as short as 6 h.
6-(Substituted methylene)penems, potent broad spectrum inhibitors of bacterial .BETA.-lactamase. V. Chiral 1,2,3-triazolyl derivatives. (1991)

Structure-activity relationships in a series of (5R)-6-triazolylmethylene penems with potent beta-lactamase inhibitory activity are described. In most cases, their in vitro synergistic activity with amoxycillin is superior to that of clavulanic acid, sulbactam and tazobactam (YTR 830). Against an Escherichia coli TEM-1 infection in mice, the compounds showed a broad range of potencies; an optimum polarity was found, however, which gave maximum potency.
Segmentation of Plane Curves (1974)

Piecewise approximation is described as a way of feature extraction, data compaction, and noise filtering of boundaries of regions of pictures and waveforms. A new fast algorithm is proposed which allows for a variable number of segments. After an arbitrary initial choice, segments are split or merged in order to drive the error norm under a prespecified bound. Results of computer experiments with cell outlines and electrocardiograms are reported.
Antihemostatic Strategies of Blood-Feeding Arthropods (2004)

Arthropods in at least 23 different families or orders, distributed between two classes (Insecta and Arachnida), feed on vertebrate blood. They are able to do this despite constraints imposed by a sophisticated array of hemostatic defenses, due to the presence of a wide range of antihemostatic molecules in their saliva, including vasodilators, antiplatelet factors, and anticoagulants. Vasodilators include amines, prostaglandins, peptides, proteins, and even a mechanism to store large amounts of nitric oxide and deliver it into the skin. Platelet aggregation inhibitors include nitric oxide, prostaglandins, apyrase, molecules that sequester ADP, and a range of peptides and proteins that interact specifically with integrin receptors. Anticoagulants include a wide variety of inhibitors that target thrombin and factor Xa, as well as proteins that disrupt the "tenase", prothrombinase, and tissue factor/FVIIa complexes. The potential complexity of saliva is illustrated with the example of Rhodnius prolixus, which contains a large array of compounds, many of which affect more than one target in the hemostatic process. Finally a brief discussion of a new approach (sialomics) to the discovery of pharmacological agents in arthropod saliva is presented.
Seismic Retrofitting of a Process Column Using Friction Dampers (2016)

During seismic reevaluation of a process column, it was found that anchor bolts are not adequate for the present seismic load. A retrofitting scheme using friction dampers of 30 kN capacity has been worked out for its qualification. Double Sliding Friction Dampers (DSFD) have been designed and fabricated. Friction dampers absorb vibration energy by friction forces between contacting plates. Normal force required to induce desired slip load is applied through pre-tensioning of the bolts. The pre-tensioning of bolts is done by tightening bolts to a specified value of torque using wrench. The bolt torque required to obtain desired slip load of damper is obtained from the damper characteristics. The characterization of friction dampers has been carried out by means of cyclic tests using hydraulic actuator. In the present paper, the details of friction damper and characterization are provided. The details of retrofitting of process column using these dampers are also presented.
The Path to Personalized Medicine (2010)

http://dx.doi.org/10.1056/NEJMp1006304
Probabilistic grid schedulingbased on job statistics and monitoring information (2005)

This transfer thesis presents a novel, probabilistic approach to scheduling applications on computational Grids based on their historical behaviour, current state of the Grid and predictions of the future execution times and resource utilisation of such applications. The work lays a foundation for enabling a more intuitive, user-friendly and effective scheduling technique termed deadline scheduling.

Initial work has established motivation and requirements for a more efficient Grid scheduler, able to adaptively handle dynamic nature of the Grid resources and submitted workload. Preliminary scheduler research identified the need for a detailed monitoring of Grid resources on the process level, and for a tool to simulate non-deterministic behaviour and statistical properties of Grid applications.

A simulation tool, GridLoader, has been developed to enable modelling of application loads similar to a number of typical Grid applications. GridLoader is able to simulate CPU utilisation, memory allocation and network transfers according to limits set through command line parameters or a configuration file. Its specific strength is in achieving set resource utilisation targets in a probabilistic manner, thus creating a dynamic environment, suitable for testing the scheduler’s adaptability and its prediction algorithm.

To enable highly granular monitoring of Grid applications, a monitoring framework based on the Ganglia Toolkit was developed and tested. The suite is able to collect resource usage information of individual Grid applications, integrate it into standard XML based information flow, provide visualisation through a Web portal, and export data into a format suitable for off-line analysis.

The thesis also presents initial investigation of the utilisation of University College London Central Computing Cluster facility running Sun Grid Engine middleware. Feasibility of basic prediction concepts based on the historical information and process meta-data have been successfully established and possible scheduling improvements using such predictions identified.
The thesis is structured as follows: Section 1 introduces Grid computing and its major concepts; Section 2 presents open research issues and specific focus of the author’s research; Section 3 gives a survey of the related literature, schedulers, monitoring tools and simulation packages; Section 4 presents the platform for author’s work – the Self-Organising Grid Resource management project; Sections 5 and 6 give detailed accounts of the monitoring framework and simulation tool developed; Section 7 presents the initial data analysis while Section 8.4 concludes the thesis with appendices and references.
Asymmetric Addition of Dimethylzinc to α-Ketoesters Catalyzed by (−)-MITH (2008)

This investigation describes the catalytic asymmetric addition of dimethylzinc to α-ketoesters in the presence of (−)-MITH (5) and triethyl borate as an additive to give the corresponding chiral α-hydroxy esters with good yields and high enantioselectivities.
Fever screening during the influenza (H1N1-2009) pandemic at Narita International Airport, Japan (2011)

The sensitivity of entry screening is a product of the sensitivity of fever for detecting influenza cases and the sensitivity of the infrared thermoscanners in detecting fever. Given the additional presence of confounding factors and unrestricted medications among passengers, reliance on fever alone is unlikely to be feasible as an entry screening measure.
Decision-making style, driving style, and self-reported involvement in road traffic accidents (1993)

In an exploratory postal survey of 711 drivers stratified by age, sex, annual mileage, and accident involvement, decision-making style was measured using a Decision-Making Questionnaire (DMQ) and driving style was assessed using a Driving Style Questionnaire (DSQ). Responses to 21 items of the DMQ formed seven independent and internally coherent dimensions according to a principal components (PC) analysis. These were labelled: control, thoroughness, instinctiveness, social resistance, hesitancy, perfectionism, and idealism. PC analysis also revealed that responses to 15 items of the DSQ formed six independent dimensions of driving style. These were labelled: speed, calmness, social resistance, focus, planning, and deviance. Multiple regression analysis indicated that drivers of 60 years and under who scored lower on thoroughness were at greater risk of a traffic accident and that this relationship was mediated by faster driving. This relationship was independent of age, sex, annual mileage and all other factors measured. In the drivers over 60 years, lower thoroughness, greater hesitancy, and faster driving were independently associated with higher accident rates independent of all other factors measured. The results provide preliminary support for the view that people import aspects of their general decision-making style into the driving situation, and that in so doing they put themselves at differential risk of having a road traffic accident.