gebhart/patrepeval huggingface dataset:
The time course of erythrocyte membrane fatty acid concentrations during and after treatment of non-human primates with increasing doses of an omega-3 rich phospholipid preparation derived from krill-oil (2017)

Increasing the omega-3 index by administering an omega-3 rich phospholipid extracted from krill oil did not alter the ratio of unsaturated vs. saturated fatty acids in the erythrocyte membranes but only the relative concentrations of unsaturated fatty acids, in particular unsaturated omega-6 fatty acids. Concentrations of saturated fatty acids remained unchanged.
The role of fibrosis in Duchenne muscular dystrophy. (2012)

Muscular dystrophies such as Duchenne muscular dystrophy (DMD) are usually approached as dysfunctions of the affected skeletal myofibres and their force transmission. Comparatively little attention has been given to the increase in connective tissue (fibrosis) which accompanies these muscular changes. Interestingly, an increase in endomysial tissue is apparent long before any muscular degeneration can be observed. Fibrosis is the result of a reactive or reparative process involving mechanical, humoral and cellular factors. Originating from vulnerable myofibres, muscle cell necrosis and inflammatory processes are present in DMD. Muscular recovery is limited due to the limited number and capacity of satellite cells. Hence, a proactive and multimodal approach is necessary in order to activate protective mechanisms and to hinder catabolic and tissue degrading pathways. Several avenues are discussed in terms of potential antifibrotic therapy approaches. These include pharmaceutical, nutritional, exercise-based and other mechanostimulatory modalities (such as massage or yoga-like stretching) with the intention of exerting an anti-inflammatory and antifibrotic effect on the affected muscular tissues. A preventive intervention at an early age is crucial, based on the early and seemingly non-reversible nature of the fibrotic tissue changes. Since consistent assessment is essential, different measurement technologies are discussed.
Towards automation of palynology 1: analysis of pollen shape and ornamentation using simple geometric measures, derived from scanning electron microscope images (2004)

Abstract This is the first of a series of papers on the theme of automated pollen analysis. The automation of pollen analysis could result in numerous advantages for the reconstruction of past environments, with larger data sets made practical, objectivity and fine resolution sampling. There are also applications in apiculture and medicine. Previous work on the classification of pollen using texture measures has been successful with small numbers of pollen taxa. However, as the number of pollen taxa to be identified increases, more features may be required to achieve a successful classification. This paper describes the use of simple geometric measures to augment the texture measures. The feasibility of this new approach is tested using scanning electron microscope (SEM) images of 12 taxa of fresh pollen taken from reference material collected on Henderson Island, Polynesia. Pollen images were captured directly from a SEM connected to a PC. A threshold grey‐level was set and binary images were then generated. Pollen edges were then located and the boundaries were traced using a chain coding system. A number of simple geometric variables were calculated directly from the chain code of the pollen and a variable selection procedure was used to choose the optimal subset to be used for classification. The efficiency of these variables was tested using a leave‐one‐out classification procedure. The system successfully split the original 12 taxa sample into five sub‐samples containing no more than six pollen taxa each. The further subdivision of echinate pollen types was then attempted with a subset of four pollen taxa. A set of difference codes was constructed for a range of displacements along the chain code. From these difference codes probability variables were calculated. A variable selection procedure was again used to choose the optimal subset of probabilities that may be used for classification. The efficiency of these variables was again tested using a leave‐one‐out classification procedure. The proportion of correctly classified pollen ranged from 81% to 100% depending on the subset of variables used. The best set of variables had an overall classification rate averaging at about 95%. This is comparable with the classification rates from the earlier texture analysis work for other types of pollen. Copyright © 2004 John Wiley & Sons, Ltd.
Nanopatterned Smart Polymer Surfaces for Controlled Attachment, Killing, and Release of Bacteria (2013)

Model surfaces with switchable functionality based on nanopatterned, thermoresponsive poly(N-isopropylacrylamide) (PNIPAAm) brushes were fabricated using interferometric lithography combined with surface-initiated polymerization. The temperature-triggered hydration and conformational changes of nanopatterned PNIPAAm brushes reversibly modulate the spatial concealment and exposure of molecules that are immobilized in the intervals between nanopatterned brushes. A biocidal quaternary ammonium salt (QAS) was used to demonstrate the utility of nanopatterned PNIPAAm brushes to control biointerfacial interactions with bacteria. QAS was integrated into polymer-free regions of the substrate between nanopatterned PNIPAAm brushes. The biocidal efficacy and release properties of these surfaces were tested against Escherichia coli K12. Above the lower critical solution temperature (LCST) of PNIPAAm, desolvated, collapsed polymer chains facilitate the attachment of bacteria and expose QAS moieties that kill attached bacteria. Upon a reduction of the temperature below the LCST, swollen PNIPAAm chains promote the release of dead bacteria. These results demonstrate that nanopatterned PNIPAAm/QAS hybrid surfaces are model systems that exhibit an ability to undergo noncovalent, dynamic, and reversible changes in structure that can be used to control the attachment, killing, and release of bacteria in response to changes in temperature.
Value Proposition of Mobile Instant Messaging (2007)

The popularity of instant messaging (IM) has escalated dramatically in recent years. This service is becoming more prolific not merely due to the convenience of the instant communication it offers, but the increased deployment of broadband has led to a rise in the availability of movies, music ,and other media for download. The use of IM on the move enables location-based services by making use of the current position of a user. To further add value to the use of mobile IM (MIM), the deployment of bots as interactive agents that respond to IM requests appeal to users. This paper evaluates the market potential of IM and bots as the next big thing in messaging on the move. The paper also looks into user segmentation and target markets, competitors in the field, factors spurring the growth of MIM and discusses a number of usage scenarios.
Apoptosis reduces both the in vitro replication and the in vivo infectivity of a baculovirus (1993)

Apoptotic programmed cell death occurs when the insect cell line SF-21, derived from Spodoptera frugiperda, is infected with mutants of the baculovirus Autographa californica nuclear polyhedrosis virus (AcMNPV) which lack a functional p35 gene. However, infection of the Trichoplusia ni TN-368 cell line with p35 mutants does not result in apoptosis (R. Clem, M. Fechheimer, and L. Miller, Science 254:1388-1390, 1991). We have examined the effect of apoptosis on AcMNPV infections in cell lines and larvae of these two insect species. Production of viral progeny was significantly lower in SF-21 cells infected with p35 mutants than in cells infected with wild-type (wt) or revertant viruses. Viral gene expression was abnormal in SF-21 cells infected with p35 mutants; there was a delay in the transcription and translation of early and late viral genes, a lack of expression of very late genes, and a total cessation of protein synthesis late in the apoptotic process. In vivo analysis revealed that the dose of budded virus required for 50% lethality in S. frugiperda larvae was approximately 1,000-fold higher for p35 mutants than for wt or revertant viruses. In contrast, the replication and infectivity of p35 mutant viruses was equivalent to that of wt AcMNPV during infection of both TN-368 cells and T. ni larvae. Thus, the data indicate that a host apoptotic response provides protection against viral infection at the organismal level and that the p35 gene constitutes a host range determinant for AcMNPV infection.
Reduktion organischer Verbindungen des fünfwertigen Phosphors zu Phosphinen, II. Reduktion tertiärer Phosphinoxyde zu tertiären Phosphinen mit Trichlorsilan (1965)

Abstract Tertiäre Phosphinoxyde können in guter Ausbeute in benzolischer Lösung mit 2 Moll. SiHCl 3 , oder in Gegenwart von 1 Mol. tert. Amin mit 1 Mol. SiHCl 3 zu tert. Phosphinen reduziert werden.
Hepatitis B virus suppresses the functional interaction between natural killer cells and plasmacytoid dendritic cells (2011)

Natural killer cells (NK) are one of the key players in the eradication and control of viral infections. Infections with the hepatitis B virus (HBV) may lead to persistence in a subgroup of patients, and impaired NK cell functions have been observed in these patients. Crosstalk with other immune cells has been shown to modulate the function of NK cells. We studied the functional crosstalk between NK cells and plasmacytoid dendritic cell (pDC) and its modulation by HBV. Healthy human peripheral blood-derived NK cells and pDC were purified and cocultured in the presence or absence of HepG2.2.15-derived HBV under various in vitro conditions. The functionality of NK cells was assessed by evaluation of activation markers, cytokine production and cytotoxicity of carboxyfluorescein succinimidyl ester-labelled K562 target cells by flow cytometry or immunoassays. Additionally, the crosstalk was examined using NK and pDC from patients with chronic HBV. The activation of NK cells in cocultures with pDC, as demonstrated by CD69, CD25 and HLA-DR, was not affected by the presence of HBV. Similarly, when cocultured with pDC, the cytotoxic potential of NK cells was not influenced by HBV. However, HBV significantly inhibited pDC-induced IFN-γ production by NK cells both in the presence and in the absence of CpG. As HBV did not affect cytokine-induced IFN-γ production by NK cells cultured alone, the suppressive effect of HBV on NK cell function was mediated via interference with pDC-NK cell interaction. In contrast to other viruses, HBV does not activate pDC-NK cell interaction but inhibits pDC-induced NK cell function. In parallel with NK cells of patients with chronic HBV, which show diminished cytokine production with normal cytotoxicity, HBV specifically suppressed pDC-induced IFN-γ production by NK cells without affecting their cytolytic ability. These data demonstrate that HBV modulates pDC-NK cell crosstalk, which may contribute to HBV persistence.
Electrical activity of defects in molecular beam epitaxially grown GaAs on Si and its reduction by rapid thermal annealing (1987)

The electrical activity of defects in GaAs grown on Si by molecular beam epitaxy (MBE) has been examined by studying the diode characteristics and deep level transient spectroscopy (DLTS) of Schottky barriers. The defects are not apparent from the forward bias diode characteristics but they are indicated by large leakage current and early breakdown under reverse-biased conditions. Post-growth rapid thermal annealing (RTA) has been found to significantly improve the diode behavior making it almost comparable to GaAs-on-GaAs. The reverse current in the as-grown material shows a very weak temperature dependence, indicating that its origin is not thermionic emission or carrier generation. It is speculated that a large part of this current is due to defect-assisted tunneling, which is reduced by RTA. DLTS indicated only a modest increase in the concentrations of the well-known electron traps typical of MBE GaAs with no evidence for new levels in the upper half of the band gap.
Sensing Hydrogen Gas from Atmospheric Pressure to a Hundred Parts per Million with Nanogaps Fabricated Using a Single-Step Bending Deformation (2015)

The widespread use of H2 gas as an energy carrier will necessitate the development of inexpensive, easily manufactured sensors which reliably monitor gas levels where H2 is used, transported, and stored. Nanogap sensors transduce the volume expansion which accompanies hydrogen uptake by palladium-based metal-hydrides into an electrical signal through the closure of nanogaps which allows a previously interrupted current to flow. While this break-junction design offers numerous functionalities, limitations still exist in terms of fabricating nanogap sensors responsive to a wide range of partial pressures. Here, we invoke a detection strategy where up to 10 000 nanogaps of various widths act in concert to provide an overall analog signal which continuously varies as the H2 partial pressure is varied from a hundred parts per million to 1 atm. The sensor is fabricated by mechanically coupling an AuPd film to a support consisting of polyimide, an adhesive, and a steel backing which, when bent, forms parallel cracks in the film which act as nanogaps. With characteristics that include room temperature detection, a high sensitivity and selectivity toward H2, low-cost lithography-free fabrication, recyclability, low power consumption, simple circuitry, and favorable aging characteristics, the device meets many of the criteria needed for practical H2 sensing.
High-quality waveguides by reverse proton exchange in stoichiometric lithium tantalate (2004)

This paper reports the development and modelling of the reverse-proton-exchange process for the realization of high quality optical waveguides in MgO doped stoichiometric lithium tantalate, a promising nonlinear material due to its low coercive field and high damage threshold. Reverse-proton-exchange gives rise to a buried refractive index-profile providing significant advantages in terms of attenuation, insertion losses and overlap of the fields interacting through the nonlinear susceptibility. By characterizing several samples fabricated under different experimental conditions, we identified a fabrication procedure which is simpler than the conventional one used for lithium niobate: the annealing and reverse-exchange processes are indeed performed at the same temperature so that the diffusion of hydrogen ions towards the substrate during the reverse-exchange occurs in the same conditions as during the annealing. This results in very simple empirical laws relating the fabrication to the optical parameters. By such a modeling we defined fabrication parameters giving rise to a single-mode waveguide at l=1.55mm with good fiber mode-matching and high efficiency when used as a nonlinear device for telecom applications.
Reading text from computer screens (1987)

This paper reviews empirical studies concerning the readability of text from computer screens. The review focuses on the form and physical attributes of complex, realistic displays of text material. Most studies comparing paper and computer screen readability show that screens are less readable than paper. There are many factors that could affect the readability of computer screens. The factors explored in this review are the features of characters, the formatting of the screen, the contrast and color of the characters and background, and dynamic aspects of the screen. Numerous areas for future research are pinpointed.
Insomnia treatment acceptability and preferences of male Iraq and Afghanistan combat Veterans and their healthcare providers (2012)

Sleep difficulty is a prevalent problem among returning Veterans. Although there is strong evidence for the efficacy and durability of cognitive-behavioral treatment for insomnia (CBT-I) in the general population, the interventions require motivation, attention, and adherence from patients to achieve successful outcomes. Given the unique characteristics of Operation Iraqi Freedom/Operation Enduring Freedom (OIF/OEF) Veterans who have experienced blast-related injuries and other trauma, CBT-I for these patients may require modification, including alternative delivery methods, to ensure effective implementation and positive outcomes. We interviewed 18 OIF/OEF Veterans who screened positive for mild traumatic brain injury and 19 healthcare providers to determine the acceptability of insomnia treatments and preferences for the interventions and treatment delivery. Veterans and providers had distinct preferences for insomnia treatment and its delivery. The treatments the Veterans found most acceptable were also the ones they preferred: relaxation treatment and pharmacotherapy. The providers identified relaxation therapy as the most acceptable treatment. Veterans preferred the individual treatment format as well as electronic methods of treatment delivery. Despite some differences between patients and providers, a compromise through modification of empirically supported behavioral treatments is feasible, and implications for preference-based insomnia intervention development and testing are discussed.
Respirator cartridge efficiency studies: VIII. summary and conclusions (1976)

The theory of solvent vapor adsorption of activated carbon is reviewed. Calculated and experimental cartridge service life values are compared using various breathing rates, relative humidities, concentrations and solvent vapors. Cartridge service life (the 10% breakthrough time) can be estimated from the emperical expression: t 10% = 2.4 X 10(6) WC (A + BT)/C 2/3 MQ Carbon weight (wc), relative solvent volatility (a, b and t) concentration (C), molecular weight (M) and breathing rate (Q) all play a vital role in cartridge performance predictions.
Unsaturated Fatty Acid, cis-2-Decenoic Acid, in Combination with Disinfectants or Antibiotics Removes Pre-Established Biofilms Formed by Food-Related Bacteria (2014)

Biofilm formation by food-related bacteria and food-related pathogenesis are significant problems in the food industry. Even though much disinfection and mechanical procedure exist for removal of biofilms, they may fail to eliminate pre-established biofilms. cis-2 decenoic acid (CDA), an unsaturated fatty acid messenger produced by Pseudomonas aeruginosa, is reportedly capable of inducing the dispersion of established biofilms by multiple types of microorganisms. However, whether CDA has potential to boost the actions of certain antimicrobials is unknown. Here, the activity of CDA as an inducer of pre-established biofilms dispersal, formed by four main food pathogens; Staphylococcus aureus, Bacillus cereus, Salmonella enterica and E. coli, was measured using both semi-batch and continuous cultures bioassays. To assess the ability of CDA combined biocides treatments to remove pre-established biofilms formed on stainless steel discs, CFU counts were performed for both treated and untreated cultures. Eradication of the biofilms by CDA combined antibiotics was evaluated using crystal violet staining. The effect of CDA combined treatments (antibiotics and disinfectants) on biofilm surface area and bacteria viability was evaluated using fluorescence microscopy, digital image analysis and LIVE/DEAD staining. MICs were also determined to assess the probable inhibitory effects of CDA combined treatments on the growth of tested microorganisms' planktonic cells. Treatment of pre-established biofilms with only 310 nM CDA resulted in at least two-fold increase in the number of planktonic cells in all cultures. While antibiotics or disinfectants alone exerted a trivial effect on CFU counts and percentage of surface area covered by the biofilms, combinational treatments with both 310 nM CDA and antibiotics or disinfectants led to approximate 80% reduction in biofilm biomass. These data suggests that combined treatments with CDA would pave the way toward developing new strategies to control biofilms with widespread applications in industry as well as medicine.
Reward without Dopamine (2003)

Dopamine (DA) is believed to play a fundamental role in reward processes. Virtually all drugs of abuse activate dopaminergic systems, as do "natural" rewards such as sexual interaction and food. Sweet-tasting solutions, for example, are a well characterized natural reward. In the present experiments, we used mice that cannot make DA (DD mice) to test the hypothesis that DA is necessary for reward. Sucrose preference, assessed with a computerized "lickometer," was used to determine whether DD mice respond preferentially for rewarding stimuli. DD mice preferentially chose sucrose over water, and also preferred the noncaloric sweetener saccharin. Furthermore, the rate of licking, bout size, and length were greater in DD mice drinking sweets than in controls. These data refute the necessity of DA for the reward processes manifested by sucrose preference. However, DD mice initiated licking less frequently than control mice and had fewer total licks. We suggest that DD mice have a deficit of goal-directed behavior that is not specific to reward processes. Lastly, juvenile DD mice demonstrate robust sucrose preference before experience with food in the presence of DA. Thus, DA is not required for mice to learn to consume sweet solutions preferentially. We conclude that DA is not required to find the sweet tastes of sucrose or saccharin rewarding.
Involvement of cholecystokininA receptors in transient lower esophageal sphincter relaxations triggered by gastric distension (1998)

Loxiglumide significantly reduces the number of TLESRs triggered by gastric distension without interfering with swallow-related relaxation of the lower esophageal sphincter, suggesting the involvement of CCKA receptors in the reflex pathway mediating TLESRs.
Unbiased look at dataset bias (2011)

Datasets are an integral part of contemporary object recognition research. They have been the chief reason for the considerable progress in the field, not just as source of large amounts of training data, but also as means of measuring and comparing performance of competing algorithms. At the same time, datasets have often been blamed for narrowing the focus of object recognition research, reducing it to a single benchmark performance number. Indeed, some datasets, that started out as data capture efforts aimed at representing the visual world, have become closed worlds unto themselves (e.g. the Corel world, the Caltech-101 world, the PASCAL VOC world). With the focus on beating the latest benchmark numbers on the latest dataset, have we perhaps lost sight of the original purpose? The goal of this paper is to take stock of the current state of recognition datasets. We present a comparison study using a set of popular datasets, evaluated based on a number of criteria including: relative data bias, cross-dataset generalization, effects of closed-world assumption, and sample value. The experimental results, some rather surprising, suggest directions that can improve dataset collection as well as algorithm evaluation protocols. But more broadly, the hope is to stimulate discussion in the community regarding this very important, but largely neglected issue.