gebhart/patrepeval huggingface dataset:
High Accuracy Ground Target Geo-location Using Autonomous Micro Aerial Vehicle Platforms (2008)

This paper presents a method for high accuracy ground target localization using a Micro Aerial Vehicle (MAV) equipped with a video camera sensor. The proposed method is based on a satellite or aeri ...
Quantification of Microvascular Response to Ionizing Radiation with Speckle Variance Optical Coherence Tomography (2012)

Cancer cells require access to blood vessels for oxygen and nutrients to enable growth and metastasis, making the tumour vasculature an attractive potential target for cancer therapies. Recent evidence suggests that the tumour vasculature plays a significant role in tumour response to high dose radiation therapy; however this effect is not well characterized due to limitations in quantitative imaging of the microvasculature. \n\tSpeckle variance optical coherence tomography is an emerging imaging modality capable of 3D, non-invasive imaging of in vivo microvasculature. This thesis outlines the work done to test the hypothesis that svOCT imaging can be used to quantitatively monitor the vascular effects of high dose radiotherapy in a preclinical model. This was achieved through the development of a quantification pipeline for longitudinal 3-D svOCT images of microvascular radioresponse.
Frequency and structure of t(14;18) major breakpoint regions in non-Hodgkin's lymphomas typed according to the Kiel classification: analysis by direct DNA sequencing. (1991)

We have examined 165 unselected cases of non-Hodgkin's lymphomas for rearrangements involving the t(14;18) major breakpoint region using a polymerase chain reaction (PCR) and direct sequencing of amplified major breakpoint region bcl-2/JH junctional regions. The lymphomas, diagnosed according to the updated Kiel classification, consisted of 33 centroblastic-centrocytic, 37 centroblastic, 27 immunocytic, 10 immunoblastic, 10 centrocytic, 2 lymphoblastic, 2 Ki-1-positive anaplastic large cell, 14 peripheral T-cell, and 4 unclassified lymphomas. In addition 18 chronic lymphocytic leukemias, 2 hairy cell leukemias, and 6 plasmacytomas were studied. In 17 cases a bcl-2/JH gene fusion sequence was amplified by PCR. A bcl-2/JH gene fusion was detected only in three lymphoma subgroups: 13 of 33 centroblastic-centrocytic (39%), 2 of 37 centroblastic (6%), and 2 of 27 immunocytic (8%) were positive. In two cases, major breakpoint region bcl-2 rearrangements verified by genomic Southern analysis were not detected by PCR. Direct sequencing of all 17 PCR-amplified, previously uncharacterized t(14;18) junctional regions provided corroborating evidence for the specificity of the assay. The procedure gave sequencing results even from limited amounts of lymphoma cells as obtained by fine needle aspiration of lymph nodes or from clinically uninvolved sites. Clone-specific sequences were identified due to the involvement of different JH segments, the variations among the exact JH and bcl-2 breakpoint positions, and the extensive incorporation of junctional region (D-) N-nucleotides. These clone-specific sequences allow accurate identification of clinically occult lymphoma cells and reduce the threat of false positive results. The finding of exceptionally long intervening sequences in some of the junctions and the partial homology with published DH segments in three cases support the view that some of the putative N-regions harbor DH regions.
Routing with QoS constraints in integrated services networks (2002)

Though the complexity for finding QoS guaranteed route in an integrated services network is proved to be NP-complete, the proof has been done without the assumption of any specific service discipline. Because each service discipline has different QoS bound computation expressions, we propose that the QoS routing algorithm should be designed for specific service discipline used. We then present a proof that, when the considered QoS constraints are bandwidth, delay, delay jitter, and loss free, by employing the weight fair queueing (WFQ) service discipline, the complexity of the problem could be reduced to that of shortest path routing without any QoS constraints. Therefore we can search such a multiple QoS constrained route in polynomial time. We also present a routing algorithm (called "QoSR/sub BF/" ), which is a modified version of Bellman-Ford. QoSR/sub BF/ can, not only successfully find the route that can satisfy the required QoS constraints, but also utilize resources wisely to minimize the call blocking probability for future calls.
Production of Alkaline Enzymes by Alkalophilic Microorganisms (1971)

Bacillus No. A–40–2 isolated from soil produced an alkaline amylase in alkaline media. The characteristic point of this microorganism was especially good growth in alkaline media, and no growth was detected in neutral media such as nutrient broth. The alkaline amylase of Bacillus No. A–40–2 was purified by DEAE-cellulose and hydroxyl apatite columns. The amylase was most active at pH 10.5 and stable pH was about 8.5. Calcium ion was effective to stabilize the enzyme especially at high temperatures. The sedimentation constant was about 3.8 S and molecular weight estimated by the Sephadex gel-filtration method was about 70,000. The enzyme was inactivated by urea, sodium laurylsulfate and sodium dodecylbenzene sulfonate. EDTA, PCMB and DFP did not show inhibitory effect. The enzyme hydrolyzed about 70% of starch and yielded glucose, maltose and maltotriose. If the enzyme is a single entity, this alkaline amylase is a type of saccharifying α-amylase.
Mood Stabilizer Valproate Promotes ERK Pathway-Dependent Cortical Neuronal Growth and Neurogenesis (2004)

Manic-depressive illness has been conceptualized as a neurochemical illness. However, brain imaging and postmortem studies reveal gray-matter reductions, as well as neuronal and glial atrophy and loss in discrete brain regions of manic-depressive patients. The roles of such cerebral morphological deficits in the neuropathophysiology and therapeutic mechanisms of manic-depressive illness are unknown. Valproate (2-propylpentanoate) is a commonly used mood stabilizer. The ERK (extracellular signal-regulated kinase) pathway is used by neurotrophic factors to regulate neurogenesis, neurite outgrowth, and neuronal survival. We found that chronic treatment of rats with valproate increased levels of activated phospho-ERK44/42 in neurons of the anterior cingulate, a region in which we found valproate-induced increases in expression of an ERK pathway-regulated gene, bcl-2. Valproate time and concentration dependently increased activated phospho-ERK44/42 and phospho-RSK1 (ribosomal S6 kinase 1) levels in cultured cortical cells. These increases were attenuated by Raf and MEK (mitogen-activated protein kinase/ERK kinase) inhibitors. Although valproate affects the functions of GSK-3 (glycogen synthase kinase-3) and histone deacetylase (HDAC), its effects on the ERK pathway were not fully mimicked by selective inhibitors of GSK-3 or HDAC. Similar to neurotrophic factors, valproate enhanced ERK pathway-dependent cortical neuronal growth. Valproate also promoted neural stem cell proliferation-maturation (neurogenesis), demonstrated by bromodeoxyuridine (BrdU) incorporation and double staining of BrdU with nestin, Tuj1, or the neuronal nuclei marker NeuN (neuronal-specific nuclear protein). Chronic treatment with valproate enhanced neurogenesis in the dentate gyrus of the hippocampus. Together, these data demonstrate that valproate activates the ERK pathway and induces ERK pathway-mediated neurotrophic actions. This cascade of events provides a potential mechanism whereby mood stabilizers alleviate cerebral morphometric deficits associated with manic-depressive illness.
Photo-Leakage Current of Zinc Oxide Thin-Film Transistors (2010)

The origin of photo-leakage current of zinc oxide thin-film transistors (ZnO TFTs) under light irradiation was investigated using a light shield technique. The irradiation position dependence revealed that the effect of light irradiation is much stronger near the source region in the channel than near the drain region. This can be explained by the enhanced carrier injection from the source electrode. The irradiation near the drain region, on the other hand, simply induced photocurrent, which is much smaller than the carrier injection on the source side. Therefore, completely transparent ZnO TFTs under visible light irradiation will be obtained, if the carrier injection from the source electrode is successfully suppressed.
Increased substance P responses in dorsal root ganglia and intestinal macrophages during<i>Clostridium difficile</i>toxin A enteritis in rats (1997)

Previously we reported that pretreatment of rats with the substance P (SP) antagonist CP-96,345 inhibits the enterotoxic responses following administration of toxin A from Clostridium difficile into ileal loops, indicating that SP participates in the intestinal responses to this toxin. We now report that injection of toxin A into rat ileum causes a rapid increase in SP content in lumbar dorsal root ganglia (DRG) and mucosal scrapings 30-60 min after toxin A administration. Toxin A-mediated fluid secretion, mannitol permeability, and ileal histologic damage is significantly increased only after 2 hr. Toxin A also causes an increase in the abundance of SP mRNA in lumbar DRG and ileal mucosa as measured by reverse transcription-PCR. Lamina propria macrophages (LPMs) obtained from toxin A-injected loops release greater amounts of tumor necrosis factor alpha (TNFalpha) and SP as compared with LPMs isolated from buffer-injected loops (P < 0.01). Pretreatment of rats with the SP antagonist CP-96,345 inhibits toxin A-mediated TNFalpha release from isolated LPMs, whereas an inactive enantiomer (CP-96,344) of the SP antagonist has no effect. LPMs obtained from toxin A-injected ileal loops incubated in vitro with SP (10(-8) to 10(-9) M) show enhanced TNFalpha secretion, whereas LPMs isolated from buffer-injected loops do not respond to SP. In addition, LPMs obtained from toxin A-injected ileal loops incubated in vitro with CP-96,345 showed a diminished TNFalpha release. Our results indicate that activated LPMs secrete SP during toxin A enteritis that can lead to secretion of cytokines, suggesting an autocrine/paracrine regulation of cytokine secretion by SP from LPMs during intestinal inflammation.
Digital halftoning with space filling curves (1991)

This paper introduces a new digital halftoning technique that uses space filling curves to generate aperiodic patterns of clustered dots. This method allows the parameterization of the size of pixel clusters, which can vary in one pixel steps. The algorithm unifies, in this way, the dispersed and clustered-dot dithering techniques.
The SCL protein displays cell-specific heterogeneity in size. (1994)

SCL protein production was examined in a variety of hemopoietic cell lines by immunoblotting using specific polyclonal antisera. SCL protein was detected in erythroid, megakaryocyte, mast and early myeloid cell lines, as well as in several lymphoid leukemia cell lines which are known to harbor SCL gene rearrangements. In most cell lines, proteins of molecular weight 49 and 44 kDa were found, however two myeloid cell lines expressed only lower molecular weight species of 24 and 22 kDa. This size discrepancy appeared to be due to cell-specific translational regulation, since overexpression of a retrovirally transfected SCL gene yielded the higher molecular weight forms in most cell lines (GP+E-86, AT2.5, M1) but only the 22 kDa form in the myeloid cell line, WEHI-3B/D+. Overexpression of full-length SCL protein in the lymphoid cell lines, SupT1 and Raji, did not alter cell phenotype and there was no evidence for autoregulation of SCL transcription. The restricted pattern of SCL protein synthesis is consistent with the restricted expression of SCL mRNA documented previously. In addition, the present results indicate that SCL protein size was determined by regulation of translation in a cell-specific manner.
Chemical Surface Modification and Characterization of Carbon Nanostructures Without Shape Damage (2020)

Carbon nanostructures have been extensively studied due to combination of properties they present. With different geometries and reactivities, carbon nanotubes, graphene and fullerene were oxidized and modified with octadecylamine (ODA) in order to decrease van der Waals’s interaction and consequently improve the polymer-carbon nanostructures affinity for use in nanocomposites. Nanostructures were characterized as morphology, chemical structure, molecular conformation and thermal properties. All nanostructures showed results that confirm the modification with ODA, without geometry being altered. Modified nanostructures showed different percentages of ODA: graphene 86%, carbon nanotubes 83% and fullerene 63%. It was attributed to distinct reactivities, shapes and specific surface area available, due to different amounts of reactive terminals obtained before oxidation reactions. However, they showed a lower interfacial interaction, which is highly favorable for use in polymer nanocomposites.
Metformin synergizes with rapamycin to inhibit the growth of pancreatic cancer inï¿½vitro and inï¿½vivo (2017)

Previous studies have suggested that metformin may improve the survival rate of patients with pancreatic cancer (PC) by regulating the adenosine monophosphate-activated protein kinase/mammalian target of rapamycin (mTOR) signaling pathway. Rapamycin specifically targets mTOR. In the present study, the efficacy of metformin and rapamycin in isolation and combination were investigated for the treatment of PC. The efficacy of metformin and rapamycin in reducing the proliferation of PC cell line SW1990 <i>in vitro</i> and <i>in vivo</i> was evaluated. It was revealed that metformin (10 mmol/l) + rapamycin (2 ng/ml), metformin (15 mmol/l) + rapamycin (20 ng/ml) and metformin (20 mmol/l) + rapamycin (200 ng/ml) significantly inhibited the viability of PC cells compared with untreated cells. Additionally, metformin (20 mmol/l) + rapamycin (200 ng/ml) significantly suppressed the expression of phosphorylated mTOR compared with metformin or rapamycin alone. Using a xenograft tumor model, it was revealed that combination treatment significantly inhibited the growth of PC cells compared with monotherapy. The present study revealed that a combination of metformin and rapamycin synergistically inhibited the growth of PC <i>in vitro</i> and <i>in vivo</i> and may be a potential treatment option for patients with PC.
Accurate and reproducible diagnosis of peanut allergy using epitope mapping (2021)

In validation of the peanut BBEA diagnostic test, the overall accuracy was found to be superior to existing diagnostic tests for peanut allergy including skin prick testing, peanut sIgE, and peanut component sIgE testing.
Beneficial Effects of Nrf2 Overexpression in a Mouse Model of Alexander Disease (2012)

Alexander disease is a fatal neurodegenerative disease caused by dominant mutations in glial fibrillary acidic protein (GFAP). The disease is characterized by protein inclusions called Rosenthal fibers within astrocyte cell bodies and processes, and an antioxidant response mediated by the transcription factor Nrf2. We sought to test whether further elevation of Nrf2 would be beneficial in a mouse model of Alexander disease. Forcing overexpression of Nrf2 in astrocytes of R236H GFAP mutant mice decreased GFAP protein in all brain regions examined (olfactory bulb, hippocampus, cerebral cortex, brainstem, cerebellum, and spinal cord) and decreased Rosenthal fibers in olfactory bulb, hippocampus, corpus callosum, and brainstem. Nrf2 overexpression also restored body weights of R236H mice to near wild-type levels. Nrf2 regulates several genes involved in homeostasis of the antioxidant molecule glutathione, and the neuroprotective effects of Nrf2 in other neurological disorders may reflect restoration of glutathione to normal levels. However, glutathione levels in R236H mice were not decreased. Nrf2 overexpression did not change glutathione levels or ratio of reduced to oxidized glutathione (indicative of oxidative stress) in olfactory bulb, where Nrf2 dramatically reduced GFAP. Depletion of glutathione through knock-out of the GCLM (glutamate-cysteine ligase modifier subunit) also did not affect GFAP levels or body weight of R236H mice. These data suggest that the beneficial effects of Nrf2 are not mediated through glutathione.
Correlation of Extrudate Infusibility with Bulk Properties using Image Analysis (1990)

ABSTRACT Corn meal extrudates were produced using process conditions designed to obtain various product structures. Extrudates were infused with a particle‐containing, high melting point lipid suspension, a process used to produce calorically dense components for military rations. Image analysis was used to estimate the degree of particle penetration into the extruded matrices and determine cell size distributions. Infusion uniformity was correlated with structural attributes, such as density, expansion, and average cell size.
Stepwise [2 + 2] and [3 + 2] "cycloaddition" reactions of allenyl cations with olefins (1981)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTStepwise [2 + 2] and [3 + 2] "cycloaddition" reactions of allenyl cations with olefinsHerbert Mayr, Brigitte Seitz, and Inge K. Halberstadt-KauschCite this: J. Org. Chem. 1981, 46, 5, 1041–1043Publication Date (Print):February 1, 1981Publication History Published online1 May 2002Published inissue 1 February 1981https://pubs.acs.org/doi/10.1021/jo00318a046https://doi.org/10.1021/jo00318a046research-articleACS PublicationsRequest reuse permissionsArticle Views226Altmetric-Citations16LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Effects of Tumour Necrosis Factor Alpha and Interleukin-1 Alpha and Beta on Human Neutrophil Migration, Respiratory Burst and Degranulation (1988)

Recombinant human tumour necrosis factor alpha (rHuTNF alpha) was shown to inhibit human neutrophil migration in the presence or absence of a chemotactic gradient generated with the tripeptide, N-formyl-L-methionyl-L-leucyl-L-phenylalanine (fMLP), at doses of 20-100 U/10(6) cells. In contrast, neither recombinant human interleukin-1 alpha (rHuIL-1 alpha), rHuIL-1 beta, human leucocyte-derived IL-1 alpha (1HuIL-1 alpha) nor 1HuIL-1 beta contained neutrophil migration inhibition properties. However, both the interleukins (1HuIL-1 alpha, 1HuIL-1 beta and rHuIL-1 alpha) and rHuTNF alpha stimulated a neutrophil respiratory burst and significantly elevated the neutrophil respiratory response to fMLP (measured as chemiluminescence and H2O2 production). The stimulatory effects were observed at doses of between 5 and 100 U/5 x 10(5) cells. A characteristic feature of the effects of the cytokines was the range of variation observed in neutrophil responses from different individuals. However, a concentration-related effect was observed with each experiment, delineating suboptimal, optimal and supra-optimal cytokine concentrations. Neutrophils treated with rHuTNF alpha and rHuIL-1 alpha and washed free of exogenous cytokine retained the capacity to show an enhanced response to fMLP. Pretreatment of cells with cytochalasin B enhanced their response to fMLP, and this response was further increased if the cells had also been pretreated with the cytokines. The response to phorbol myristate acetate was also enhanced by rHuTNF alpha and rHuIL-1 alpha. The effects of these cytokines on neutrophils could be abolished by boiling the preparation but not by treating it with polymixin B, suggesting that bacterial lipopolysaccharide was not responsible for the activity of these preparations. The rHuIL-1 alpha increased the release of lysozyme, beta-glucuronidase and myeloperoxidase initiated by cytochalasin B/fMLP, while rHuTNF alpha only increased lysozyme release.
Multi-responsive biomaterials and nanobioconjugates from resilin-like protein polymers (2014)

Nature, through evolution over millions of years, has perfected materials with amazing characteristics and awe-inspiring functionalities that exceed the performance of man-made synthetic materials. One such remarkable material is native resilin - an extracellular skeletal protein that plays a major role in the jumping, flying, and sound production mechanisms in many insects. It is one of the most resilient (energy efficient) elastomeric biomaterials known with a resilience of ∼97% and a fatigue life in excess of 300 million cycles. Recently, resilin-like polypeptides (RLPs) with exquisite control over the amino acid sequence (comprising repeat resilin motifs) and tuneable biological properties and/or functions have been generated by genetic engineering and cloning techniques. RLPs have been the subject of intensive investigation over a decade and are now recognized to be multi-functional and multi-stimuli responsive; including temperature (exhibiting both an upper and a lower critical solution temperature), pH, moisture, ion and photo-responsive with tuneable photo-physical properties. Such unusual multi-stimuli responsiveness has scarcely been offered and reported for either synthetic or natural biopolymers. Furthermore, the directed molecular self-assembly property of RLPs also exhibits promise as efficient templates for the synthesis and stabilization of metal nanoparticles. These developments and observations reveal the opportunities and new challenges for RLPs as novel materials for nanotechnology, nanobiotechnology and therapeutic applications. In this review, we discuss and highlight the design and synthesis of different RLPs, their unique molecular architecture, advanced responsive behaviour, and functionality of hydrogels, solid-liquid interfaces, nanoparticles and nanobioconjugates derived from RLPs.
Oligomerization and Activity of the Helicase Domain of the Tobacco Mosaic Virus 126- and 183-Kilodalton Replicase Proteins (2003)

A protein-protein interaction within the helicase domain of the Tobacco mosaic virus (TMV) 126- and 183-kDa replicase proteins was previously implicated in virus replication (S. Goregaoker, D. Lewandowski, and J. Culver, Virology 282:320-328, 2001). To further characterize the interaction, polypeptides covering the interacting portions of the TMV helicase domain were expressed and purified. Biochemical characterizations demonstrated that the helicase domain polypeptides hydrolyzed ATP and bound both single-stranded and duplexed RNA in an ATP-controlled fashion. A TMV helicase polypeptide also was capable of unwinding duplexed RNA, confirming the predicted helicase function of the domain. Biochemically active helicase polypeptides were shown by gel filtration to form high-molecular-weight complexes. Electron microscopy studies revealed the presence of ring-like oligomers that displayed six-sided symmetry. Taken together, these data demonstrate that the TMV helicase domain interacts with itself to produce hexamer-like oligomers. Within the context of the full-length 126- and 183-kDa proteins, these findings suggest that the TMV replicase may form a similar oligomer.