gebhart/patrepeval huggingface dataset:
Grow and Prune Compact, Fast, and Accurate LSTMs (2018)

Long short-term memory (LSTM) has been widely used for sequential data modeling. Researchers have increased LSTM depth by stacking LSTM cells to improve performance. This incurs model redundancy, increases run-time delay, and makes the LSTMs more prone to overfitting. To address these problems, we propose a hidden-layer LSTM (H-LSTM) that adds hidden layers to LSTM's original one level non-linear control gates. H-LSTM increases accuracy while employing fewer external stacked layers, thus reducing the number of parameters and run-time latency significantly. We employ grow-and-prune (GP) training to iteratively adjust the hidden layers through gradient-based growth and magnitude-based pruning of connections. This learns both the weights and the compact architecture of H-LSTM control gates. We have GP-trained H-LSTMs for image captioning and speech recognition applications. For the NeuralTalk architecture on the MSCOCO dataset, our three models reduce the number of parameters by 38.7x [floating-point operations (FLOPs) by 45.5x], run-time latency by 4.5x, and improve the CIDEr score by 2.6. For the DeepSpeech2 architecture on the AN4 dataset, our two models reduce the number of parameters by 19.4x (FLOPs by 23.5x), run-time latency by 15.7%, and the word error rate from 12.9% to 8.7%. Thus, GP-trained H-LSTMs can be seen to be compact, fast, and accurate.
Cross-Layer Resource Allocation in Multi-interface Multi-channel Wireless Multi-hop Networks (2014)

In this paper, an analytical framework is proposed for the optimization of network performance through joint congestion control, channel allocation, rate allocation, power control, scheduling, and routing with the consideration of fairness in multi-channel wireless multi-hop networks. More specifically, the framework models the network by a generalized network utility maximization (NUM) problem under an elastic link data rate and power constraints. Using the dual decomposition technique, the NUM problem is decomposed into four subproblems — flow control; next-hop routing; rate allocation and scheduling; power control; and channel allocation — and finally solved by a low-complexity distributed method. Simulation results show that the proposed distributed algorithm significantly improves the network throughput and energy efficiency compared with previous algorithms.
Spinal Cord Monitoring (1991)

The Scoliosis Research Society (SRS) and the European Spinal Deformity Society (ESDS) membership was surveyed regarding the use of intraoperative monitoring of somatosensory evoked potentials in spinal surgery. A total of 242 people responded, with 188 using intraoperative monitoring. A second survey was distributed detailing the technical aspects of monitoring, of which 71 were returned. A total of 342 neurologic deficits were reported to have occurred with monitoring in place. Two hundred forty-six (72%) were accurately detected, and 96 (28%) were not detected by sensory cord evoked potentials (SCEP). There were 1,003 false-positive cases reported. The incidence of false-negative cases was related to those not monitoring both latency and amplitude, to using fewer recording electrodes, and with those surgeons doing more kyphosis corrections.
Catalytic Hydrogenation of Methylacetylene (1967)

The reaction between methylacetylene and hydrogen over supported and unsupported nickel catalysts has been investigated in a static constant volume system for a wide range of temperature and reactant ratios. The pressure–time curves consist of two linear portions of different slopes. The reaction over nickel is largely simple hydrogenation, the early stages being principally a selective production of propylene with small yields of reduced polymers of methylacetylene. The orders of the hydrogenation reaction are first and zero with respect to hydrogen and methylacetylene respectively. The overall apparent activation energies for nickel–pumice and nickel–kieselguhr are 16.8 and 14.0 kcal/mole and for unsupported nickel catalysts vary between 17.2 and 20.0 kcal/mole. A satisfactory "compensation effect" exists between the activation energies and logarithmic values of the pre-exponential factors. The unsupported catalysts were not poisoned when methylacetylene was added first to the reaction vessel.
Endothelin-1 Participation in Overt and Inflammatory Pain (1989)

Endothelin-1 (ET-1) induced hyperalgesia in rats, abdominal constrictions in mice, incapacitation in dogs, and, when injected intradermally into humans, caused wheal and flare responses, which were accompanied by itching. The ET-1 induced constrictions in mice were prevented by indomethacin. In contrast, indomethacin had no effect on the hyperalgesic responses in the rat. These results indicate that ET-1 may play a role in modulating pain.
IT Certification: Demand, Characteristics and Integration into Traditional University MIS Curriculum (2015)

The value of IT certification is a subject of debate. IT magazines suggest that certifications can provide opportunities for new positions, promotions or salary increases to existing employees. Research suggests that IT certification can boost a fresh graduate’s profile to garner the attention of a hiring manager. Research also suggests that certification, education and experience are complimentary factors in the future job prospects of a candidate. For years, educators have been suggesting to include IT certifications in the traditional computing curricula of colleges and universities. However, due to a dearth of knowledge and commitment, faculty members have been reluctant to follow the suggested route. In this paper, we report the steps of integrating several IT certifications in the graduate MIS curriculum of a U.S. university over a period of six years. Certifications from the leading vendors such as Microsoft, Oracle, and Cisco were integrated into the programming, database, and networking courses. A Survey of past and present students suggests that almost all believe that IT certification can help them build a better career and they were prepared well for the certification exams. We recommend that educationists who have been faced with the dilemma of whether or not to adapt IT certifications in their computing curricula, should take the steps and do so. That will bring IT departments up to the par with IT industry standards.
Cytoskeleton and plant salt stress tolerance (2011)

The plant cytoskeleton is a highly dynamic component of plant cells and mainly based on microtubules (MTs), and actin filaments (AFs). The important functions of dynamic cytoskeletal networks have been indicated for almost every intracellular activity, from cell division to cell movement, cell morphogenesis and cell signal transduction. Recent studies have also indicated a close relationship between the plant cytoskeleton and plant salt stress tolerance. Salt stress is a significant factor that adversely affects crop productivity and quality of agricultural fields worldwide. The complicated regulatory mechanisms of plant salt tolerance have been the subject of intense research for decades. It is well accepted that cellular changes are very important in plant responses to salt stress. Because the organization and dynamics of cytoskeleton may play an important role in enhancing plant tolerance through various cell activities, study on salt stress-induced cytoskeletal network has been a vital topic in the subject of plant salt stress tolerance mechanisms. In this article, we introduce our recent work and review some current information on the dynamic changes and functions of cytoskeletal organization in response to salt stress. The accumulated data point to the existence of highly dynamic cytoskeletal arrays and the activation of complex cytoskeletal regulatory networks in response to salt stresses. The important role played by cytoskeleton in mediating the plant cell's response to salt stresses is particularly emphasized.
Commensal radar using separated reference and surveillance channel configuration (2012)

A report is presented on results achieved with an FM band commensal radar system in which the surveillance and reference antennas are widely separated, making use of common view, Global Positioning System disciplined oscillators to maintain timing synchronicity. The proposed configuration allows greater DPI suppression by means of terrain shielding and independent selection of the surveillance receiver position to enhance target visibility.
Genetic bias in immune responses to a cassette shared by different microorganisms in patients with rheumatoid arthritis. (1997)

Rheumatoid arthritis (RA) is an autoimmune disease associated with HLA-DRbeta1 alleles which contain the QKRAA amino acid sequence in their third hypervariable region(s). The QKRAA sequence is also expressed by several human pathogens. We have shown previously that an Escherichia coli peptide encompassing QKRAA is a target of immune responses in RA patients. Here we address two questions: first, whether QKRAA may function as an "immunological cassette" with similar, RA-associated, immunogenic properties when expressed by other common human pathogens; and second, what is the influence of genetic background in the generation of these responses. We find that early RA patients have enhanced humoral and cellular immune responses to Epstein-Barr virus and Brucella ovis and Lactobacillus lactis antigens which contain the QKRAA sequence. These results suggest that the QKRAA sequence is an antigenic epitope on several different microbial proteins, and that RA patients recognize the immunological cassette on different backgrounds. ANOVA of immune responses to "shared epitope" antigens in monozygotic twin couples shows that, despite significantly elevated responses in affected individuals, a similarity between pairs is retained, thus suggesting a role played either by hereditary or shared environmental factors in the genesis or maintenance of these responses.
Endogenous expression of E1A in human cells enhances the effect of adenovirus E3 on class I major histocompatibility complex antigen expression (1993)

Group C human adenovirus (Ad) serotypes (e.g., Ad type 2 [Ad2] and Ad5) cause persistent infections in humans. One explanation for Ad persistence is an ineffective cytotoxic T-lymphocyte response due to diminished cell surface expression of class I major histocompatibility antigen (MHC Ag) on Ad-infected cells, an effect mediated by the Ad E3 19-kDa glycoprotein (E3 effect). However, we previously reported that, except for the Ad5 E1-transformed human cell line 293, a variety of human lymphoid, epithelial, and fibroblastic cells are resistant to the E3 effect during Ad5 infection (J. M. Routes and J. L. Cook, J. Immunol. 144:2763-2770, 1990). The present study tested the hypothesis that endogenous expression of E1A proteins in 293 cells sensitizes cells to this E3 effect, resulting in an enhanced downregulation of surface class I MHC Ag expression following Ad5 infection. Human epithelial and fibroblastic cells expressing E1A gene products for at least 72 h exhibited an enhanced E3 effect following Ad5 infection that was independent of baseline levels of surface class I MHC Ag expression and of E1A induction of E3 19-kDa glycoprotein expression. There was a direct correlation between the level of endogenous E1A expressed and the magnitude of the E3 effect. We postulate that the in vivo existence of cells stably expressing either E1A proteins or E1A-like activities in the microenvironment of Ad5 infection provides a reservoir of Ad-infected cells that is relatively protected from the virus-specific cytotoxic T-lymphocyte response, thereby favoring Ad persistence in humans.
Norovirus RNA Synthesis Is Modulated by an Interaction between the Viral RNA-Dependent RNA Polymerase and the Major Capsid Protein, VP1 (2012)

Using a cell-based assay for RNA synthesis by the RNA-dependent RNA polymerase (RdRp) of noroviruses, we previously observed that VP1, the major structural protein of the human GII.4 norovirus, enhanced the GII.4 RdRp activity but not that of the related murine norovirus (MNV) or other unrelated RNA viruses (C. V. Subba-Reddy, I. Goodfellow, and C. C. Kao, J. Virol. 85:13027-13037, 2011). Here, we examine the mechanism of VP1 enhancement of RdRp activity and the mechanism of mouse norovirus replication. We determined that the GII.4 and MNV VP1 proteins can enhance cognate RdRp activities in a concentration-dependent manner. The VP1 proteins coimmunoprecipitated with their cognate RdRps. Coexpression of individual domains of VP1 with the viral RdRps showed that the VP1 shell domain (SD) was sufficient to enhance polymerase activity. Using SD chimeras from GII.4 and MNV, three loops connecting the central β-barrel structure were found to be responsible for the species-specific enhancement of RdRp activity. A differential scanning fluorimetry assay showed that recombinant SDs can bind to the purified RdRps in vitro. An MNV replicon with a frameshift mutation in open reading frame 2 (ORF2) that disrupts VP1 expression was defective for RNA replication, as quantified by luciferase reporter assay and real-time quantitative reverse transcription-PCR (qRT-PCR). Trans-complementation of VP1 or its SD significantly recovered the VP1 knockout MNV replicon replication, and the presence or absence of VP1 affected the kinetics of viral RNA synthesis. The results document a regulatory role for VP1 in the norovirus replication cycle, further highlighting the paradigm of viral structural proteins playing additional functional roles in the virus life cycle.
Mechanisms of genetic variability in <i>Halobacterium halobium</i>: the purple membrane and gas vesicle mutations (1989)

Several phenotypic variants of Halobacterium halobium arise spontaneously at extremely high frequencies (up to 1%) and are readily identified by inspection of bacterial colonies. Two mutant types, those lacking the buoyant gas vesicles or the photosynthetic purple membrane, have been studied in detail by phenotypic and molecular genetic analysis. In the wild-type NRC-1 strain, the bop gene, encoding the purple membrane protein bacterio-opsin, is found on the bacterial chromosome, while the gas vesicle protein genes, gvpA and gvpC, are present on pNRC100, a multicopy plasmid of approximately 150 kilobase pairs. The gvpA and gvpC genes are on a single transcription unit, while the major bop mRNA is monocistronic. Essentially all of the purple membrane deficient mutants contain insertion sequence (IS) elements into or upstream of the bop gene. Two elements, ISH 1 and ISH 2, account for most (80-90%) of the purple membrane mutations, but at least three other elements, ISH 23, ISH 26, and ISH S1, have also been implicated. The gas vesicle mutants are more heterogeneous, with many displaying partial phenotypes. Three major classes of gas vesicle mutants are distinguishable: class I and class III mutants are the result of large deletions in pNCR100; however, while class I mutants are partially gas vesicle deficient and contain a correspondingly reduced number of gvpAC operon copies, class III mutants contain no detectable copies of the gas vesicle genes and are essentially completely gas vesicle deficient. Class II mutants, like the purple membrane mutants, contain IS elements into or upstream of the gas vesicle genes.(ABSTRACT TRUNCATED AT 250 WORDS)
Akirin (2012)

Embryonic patterning relies upon an exquisitely timed program of gene regulation. While the regulation of this process via the action of transcription factor networks is well understood, new lines of study have highlighted the importance of a concurrently regulated program of chromatin remodeling during development. Chromatin remodeling refers to the manipulation of the chromatin architecture through rearrangement, repositioning, or restructuring of nucleosomes to either favor or hinder the expression of associated genes. While the role of chromatin remodeling pathways during tumor development and cancer progression are beginning to be clarified, the roles of these pathways in the course of tissue specification, morphogenesis and patterning remains relatively unknown. Further, relatively little is understood as to the mechanism whereby developmentally critical transcription factors coordinate with chromatin remodeling factors to optimize target gene loci for gene expression. Such a mechanism might involve direct transcription factor/chromatin remodeling factor interactions, or could likely be mediated via an unknown intermediary. Our group has identified the relatively unknown protein Akirin as a putative member of this latter group: a secondary cofactor that serves as an interface between a developmentally critical transcription factor and the chromatin remodeling machinery. This role for the Akirin protein suggests a novel regulatory mode for regulating gene expression during development.
The Roles of Reactive Species in Micropollutant Degradation in the UV/Free Chlorine System (2014)

The UV/free chlorine process forms reactive species such as hydroxyl radicals (HO(•)), chlorine atoms (Cl(•)), Cl2(•-), and O(•-). The specific roles of these reactive species in aqueous micropollutant degradation in the UV/chlorine process under different conditions were investigated using a steady-state kinetic model. Benzoic acid (BA) was chosen as the model micropollutant. The steady-state kinetic model developed fitted the experimental data well. The results showed that HO(•) and Cl(•) contributed substantially to BA degradation, while the roles of the other reactive species such as Cl2(•-) and O(•-) were negligible. The overall degradation rate of BA decreased as the pH increased from 6 to 9. In particular, the relative contributions of HO(•) and Cl(•) to the degradation changed from 34.7% and 65.3% respectively at pH 6 to 37.9% and 62% respectively at pH 9 under the conditions evaluated. Their relative contributions also changed slightly with variations in chlorine dosage, BA concentration and chloride concentration. The scavenging effect of natural organic matter (NOM) on Cl(•) was relatively small compared to that on HO(•), while bicarbonate preferentially reduced the contribution of Cl(•). This study is the first to demonstrate the contributions of different reactive species to the micropollutant degradation in the UV/chlorine system under environmentally relevant conditions.
Quantification of Endogenous Retinoids (2010)

Numerous physiological processes require retinoids, including development, nervous system function, immune responsiveness, proliferation, differentiation, and all aspects of reproduction. Reliable retinoid quantification requires suitable handling and, in some cases, resolution of geometric isomers that have different biological activities. Here we describe procedures for reliable and accurate quantification of retinoids, including detailed descriptions for handling retinoids, preparing standard solutions, collecting samples and harvesting tissues, extracting samples, resolving isomers, and detecting with high sensitivity. Sample-specific strategies are provided for optimizing quantification. Approaches to evaluate assay performance also are provided. Retinoid assays described here for mice also are applicable to other organisms including zebrafish, rat, rabbit, and human and for cells in culture. Retinoid quantification, especially that of retinoic acid, should provide insight into many diseases, including Alzheimer's disease, type 2 diabetes, obesity, and cancer.
In vitro alternatives for ocular irritation. (1998)

The necessity of using animals to test whether new chemicals and products are eye irritants has been questioned with increasing frequency and fervor over the last 20 years. During this time many new nonanimal methods have been proposed as reliable alternatives to the traditional rabbit (Draize) test. To date, however, none of these nonanimal (in vitro) tests have become universally accepted as a complete replacement for the Draize test. To understand why a complete replacement has not been found, one has to first understand the reasonably complex structure of the eye, the standard Draize scoring scale--which is based on a qualitative evaluation of three different tissues--the differences between human and rabbit eyes, the intrinsic variability of the animal test, and the details of the different in vitro tests that have been proposed as replacements. The in vitro tests vary from relatively simple assays using single cells to more sophisticated assays that use discarded animal tissue or artificially constructed human tissue. It is clear that appropriately designed in vitro tests will eventually give more useful mechanistic information about ocular injury from which we can more comfortably predict the risk of human eye irritation from new products and ingredients.
On Key Authentic Degree of Cryptosystem. (2009)

Against such attacks as rubber-hose attack, key authentic degree of cryptosystem is expatiated in detail, and the important significance of key authentic degree of cryptosystem is pointed out. And the key authentic degrees of modern cryptosystem under different conditions are given. Research shows that under most realistic situations, the key authentic degree of modern cryptosystem is high, this means that modern cryptosystem is threatened by such as rubber-hose attack and so on. Feasibility of low key authentic degree reliability is analyzed, and the implementing of low key authentic degree algorithm is studied.
Cardiac Ryanodine Receptor Function and Regulation in Heart Disease (2004)

The cardiac ryanodine receptor (RyR2) located on the sarcoplasmic reticulum (SR) controls intracellular Ca(2+) release and muscle contraction in the heart. Ca(2+) release via RyR2 is regulated by several physiological mediators. Protein kinase (PKA) phosphorylation dissociates the stabilizing FKBP12.6 subunit (calstabin2) from the RyR2 complex, resulting in increased contractility and cardiac output. Congestive heart failure is associated with elevated plasma catecholamine levels, and chronic stimulation of beta-adrenergic receptors leads to PKA hyperphosphorylation of RyR2 in failing hearts. PKA hyperphosphorylation results in calstabin2-depleted RyR2 that displays altered channel gating and may cause aberrant SR Ca(2+) release, depletion of SR Ca(2+) stores, and reduced myocardial contractility in heart failure. Calstabin2-depleted RyR2 may also trigger cardiac arrhythmias that cause sudden cardiac death. In patients with catecholaminergic polymorphic ventricular tachycardia (CPVT), RyR2 missense mutations cause reduced calstabin2 binding to RyR2. Increased RyR2 phosphorylation and pathologically increased calstabin2 dissociation during exercise results in aberrant diastolic calcium release, which may trigger ventricular arrhythmias and sudden cardiac death. In conclusion, heart failure and exercise-induced sudden cardiac death have been linked to defects in RyR2-calstabin2 regulation, and this may represent a novel target for the prevention and treatment of these forms of heart disease.