gebhart/patrepeval huggingface dataset:
Decreased Levels of VAMP2 and Monomeric Alpha-Synuclein Correlate with Duration of Dementia (2016)

Alpha-synuclein (α-syn) aggregations are the key pathological hallmark of dementia with Lewy bodies (DLB) and Parkinson's disease dementia (PDD), but are also frequently present in Alzheimer's disease (AD). Much remains unknown about the role of α-syn in the synapse and the wider role of synaptic dysfunction in these dementias. Changes in concentrations of key 'SNAP (Soluble N-ethylmaleimide Sensitive Factor Attachment Protein) Receptor' (SNARE) proteins as a consequence of alterations in the aggregation state of α-syn may contribute to synaptic dysfunction in patients with DLB, PDD, and AD and result in impaired cognition. We have studied a large cohort (n = 130) of autopsy confirmed DLB, PDD, AD, and control brains. Using semi-quantitative western blotting, we have demonstrated significant changes across the diagnostic groups of DLB, PDD, and AD in the SNARE and vesicle proteins syntaxin, Munc18, VAMP2, and monomeric α-syn in the prefrontal cortex, with a significant reduction of Munc18 in AD patients (p < 0.001). This correlated to the final MMSE score before death (p = 0.016). We also identified a significant negative correlation between the duration of dementia and the levels of the binding partners VAMP2 (p = 0.0004) and monomeric α-syn (p = 0.0002). Our findings may indicate that an upregulation of SNARE complex related proteins occurs in the early stages of disease as an attempt at compensating for failing synapses, prior to widespread deposition of pathological α-syn.
Navy Operations Research (2002)

This paper emphasizes OR's utility to the U.S. Navy, as seen by its customers. Like many naval officers who subspecialized in operations research, the author was both producer and consumer of analysis toward improving fleet operations, Pentagon planning, and training effectiveness. Many of OR's unnoticed heroes are officers and Navy civilians who, then and now, could put operations analysis to best practical use. The paper reaches three conclusions, which (briefly) are: (1) The U.S. Navy could shift much analytical talent to improve fleet readiness and scarcely notice a loss of quality in Washington, (2) the benefit of Navy OR in the Pentagon was not so much in formal decision making as it was in educating a stream of future leaders about the state of the Navy and cost-constrained possible future states, and (3) the distinguishing contribution of all OR has been and still is in helping executives make better, timely decisions by applying our special art of quantitative analysis, and only incidentally in the fidelity or complexity of the models and other tools we employ.
Planar optical waveguides formed by silver-ion migration in glass (1977)

A detailed study has been carried out on the propagation-mode characteristics of graded-index planar optical waveguides formed by silver-sodium ion exchange. It has been found that the index profile can be accurately modeled by a monotonic decrease from a maximum value at the surface, following a second-order polynomial distribution. Definition of an effective diffusion constant leads to a universal mode-dispersion diagram applicable over a wide range of fabrication conditions. Interferometric observations of the refractive-index profile, together with electron microprobe analysis, give further support to the second-order polynomial distribution. The index profile has also been compared with silver-concentration profiles predicted by interdiffusion theory. Results obtained are also relevant to methods of coupling between planar and circular fiber-optical waveguides, where sections of optical fiber undergo ion exchange.
Transition Metal Catalyzed Borations (2003)

Abstract For Abstract see ChemInform Abstract in Full Text.
BIMOS transistor and its applications in ESD protection in advanced CMOS technology (2012)

BIMOS transistor is a useful device and now compliant in advanced CMOS technology. This device acts with high controlled current gain. Thus, it is an efficient candidate for Electrostatic Discharge (ESD) protection. Moreover it is well known that ESD protection for advanced CMOS technologies is a major challenge due to down-scaling which introduces a reduction of the intrinsic robustness. This paper introduces the BIMOS ESD approach with simulations in 45nm. Silicon measurements are performed on 32 nm CMOS high k metal gate.
Partial discharge detection in high voltage cables using VHF capacitive coupler and screen interruption techniques (2003)

The application of capacitive coupler and screen interruption techniques to partial discharge (PD) detection in power cable systems has been investigated. Both techniques work in the very high frequency range up to approximately 300 MHz. For both methods, signal calibration, detection sensitivity and PD site location through time of flight analysis have been assessed experimentally.
A new five-level converter for low-voltage motor drive applications (2014)

This paper has proposed a five-level converter topology for low-voltage (380 V) motor drive applications, which brings in benefits of more output voltage levels, reduced harmonics, less dv/dt and EMI issues. The operation of the converter has been explained. The redundancy in the switching states can be used to balance the dc-link neutral point voltage and control the clamping capacitor voltage. Simulation results have validated the proposed topology and control scheme.
Competitive facilitation of drug-resistant <i>Plasmodium falciparum</i> malaria parasites in pregnant women who receive preventive treatment (2009)

Intermittent preventive treatment in pregnancy (IPTp) is used to prevent Plasmodium falciparum malaria. However, parasites resistant to the IPTp drug sulfadoxine-pyrimethamine (SP) have emerged worldwide, and infections with mixed resistant and susceptible parasites are exacerbated by pyrimethamine in mice. In a prospective delivery cohort in Muheza, Tanzania, we examined the effects of SP IPTp on parasite resistance alleles, parasite diversity, level of parasitemia, and inflammation in the placenta. IPTp use was associated with an increased fraction of parasites carrying the resistance allele at DHPS codon 581, an increase in the level of parasitemia, and more intense placental inflammation. The lowest mean level of parasite diversity and highest mean level of parasitemia occurred in women after recent IPTp use. These findings support a model of parasite release and facilitation, whereby the most highly resistant parasites out-compete less fit parasite populations and overgrow under drug pressure. Use of partially effective anti-malarial agents for IPTp may exacerbate malaria infections in the setting of widespread drug resistance.
ALD Options for Si-integrated Ultrahigh-density Decoupling Capacitors in Pore and Trench Designs (2007)

This paper reviews the options of using Atomic Layer Deposition (ALD) in passive and heterogeneous integration. The miniaturization intended by both integration schemes aim at Si- based integration for the former and at die stacking in a compact System-in-Package for the latter. In future Si-based integrated passives a next miniaturization step in trench capacitors requires the use of multiple 'classical' MOS layer stacks and the use of so-called high-k dielectrics (based on HfO2, etc.) and novel conductive layers like TiN, etc. to compose MIS and MIM stacks in 'trench' and 'pore' capacitors with capacitance densities exceeding 200 nF/mm2. One of the major challenges in realizing ultrahigh-density trench capacitors is to find an attractive pore lining and filling fabrication technology at reasonable cost and reaction rate as well as low temperature (for back-end processing freedom). As the deposition for the dielectric and conductive layers should be highly uniform, step-conformal and low- temperature ({less than or equal to} 400 {degree sign}C), ALD is an enabling technology here, by virtue of the self-limiting mechanism of this layer-by-layer deposition technique. This article discusses first a few examples of LPCVD deposition of conventional MOS layers with ONO-dielectrics and in situ doped polycrystalline silicon, both as single layers and multilayer stacks. In addition, a few options for ALD deposition of thin dielectric and conductive layers (e.g. HfO2- and TiN-based) will be discussed. The silicon substrates that were used contained high aspect ratio ({greater than or equal to} 20) features with cross-section and spacing of the order of 1 μm.
Development of destructive arthritis in vaccinated hamsters challenged with Borrelia burgdorferi (1994)

We present the first direct evidence that adverse effects, particularly severe destructive arthritis, can develop in vaccinated hamsters after challenge with Borrelia burgdorferi sensu lato isolates. Hamsters were vaccinated with a whole-cell preparation of Formalin-inactivated B. burgdorferi sensu stricto isolate C-1-11 in adjuvant. A severe destructive arthritis was readily evoked in vaccinated hamsters challenged with the homologous B. burgdorferi sensu stricto isolate C-1-11 before high levels of protective borreliacidal antibody developed. Once high levels of C-1-11 borreliacidal antibody developed, hamsters were protected from homologous challenge and development of arthritis. Vaccinated hamsters, however, still developed severe destructive arthritis when challenged with other isolates of the three genomic groups of B. burgdorferi sensu lato (B. burgdorferi sensu stricto isolate 297, Borrelia garinii isolate LV4, and Borrelia afzelii isolate BV1) despite high levels of C-1-11 specific borreliacidal antibody. Vaccines that contained whole spirochetes in adjuvant induced destructive arthritis, but this effect was not dependent on the isolate of B. burgdorferi sensu lato or the type of adjuvant. These studies demonstrate that caution is necessary when employing whole spirochetes in adjuvant for vaccination to prevent Lyme borreliosis. Additional studies are needed to identify the antigen(s) responsible for the induction and activation of arthritis and to define the immune mechanisms involved.
Effect of the Novel Low Molecular Weight Hydrolyzed Chicken Sternal Cartilage Extract, BioCell Collagen, on Improving Osteoarthritis-Related Symptoms: A Randomized, Double-Blind, Placebo-Controlled Trial (2012)

Osteoarthritis (OA) is a significant source of pain and disability. Current medical and surgical treatments can be costly and have serious side effects. The aim of this randomized, double-blind, placebo-controlled trial was to investigate the tolerability and efficacy of BioCell Collagen (BCC), a low molecular weight dietary supplement consisting of hydrolyzed chicken sternal cartilage extract, in the treatment of OA symptoms. Patients (n = 80) in the study had physician-verified evidence of progressive OA in their hip and/or knee joint. Joint pain had been present for 3 months or longer at enrollment, and pain levels were 4 or higher at baseline as assessed by Physician Global Assessment scores. Subjects were divided into two groups and administered either 2 g of BCC or placebo for 70 days. Other outcome measurements included visual analogue scale (VAS) for pain and Western Ontario and McMaster Universities Arthritis Index (WOMAC) scores taken on days 1, 35, and 70. The tolerability profile of the treatment group was comparable to that of the placebo. Intent-to-treat analysis showed that the treatment group, as compared to placebo, had a significant reduction of VAS pain on day 70 (p < 0.001) and of WOMAC scores on both days 35 (p = 0.017) and 70 (p < 0.001). The BCC group experienced a significant improvement in physical activities compared to the placebo group on days 35 (p = 0.007) and 70 (p < 0.001). BCC was well tolerated and found to be effective in managing OA-associated symptoms over the study period, thereby improving patient's activities of daily living. BCC can be considered a potential complement to current OA therapies.
Synthesis, structure, and photovoltaic property of a nanocrystalline 2H perovskite-type novel sensitizer (CH3CH2NH3)PbI3 (2012)

A new nanocrystalline sensitizer with the chemical formula (CH3CH2NH3)PbI3 is synthesized by reacting ethylammonium iodide with lead iodide, and its crystal structure and photovoltaic property are investigated. X-ray diffraction analysis confirms orthorhombic crystal phase with a = 8.7419(2) Å, b = 8.14745(10) Å, and c = 30.3096(6) Å, which can be described as 2 H perovskite structure. Ultraviolet photoelectron spectroscopy and UV-visible spectroscopy determine the valence band position at 5.6 eV versus vacuum and the optical bandgap of ca. 2.2 eV. A spin coating of the CH3CH2NH3I and PbI2 mixed solution on a TiO2 film yields ca. 1.8-nm-diameter (CH3CH2NH3)PbI3 dots on the TiO2 surface. The (CH3CH2NH3)PbI3-sensitized solar cell with iodide-based redox electrolyte demonstrates the conversion efficiency of 2.4% under AM 1.5 G one sun (100 mW/cm2) illumination.
Improved regulatory element prediction based on tissue-specific local epigenomic signatures (2017)

Accurate enhancer identification is critical for understanding the spatiotemporal transcriptional regulation during development as well as the functional impact of disease-related noncoding genetic variants. Computational methods have been developed to predict the genomic locations of active enhancers based on histone modifications, but the accuracy and resolution of these methods remain limited. Here, we present an algorithm, regulatory element prediction based on tissue-specific local epigenetic marks (REPTILE), which integrates histone modification and whole-genome cytosine DNA methylation profiles to identify the precise location of enhancers. We tested the ability of REPTILE to identify enhancers previously validated in reporter assays. Compared with existing methods, REPTILE shows consistently superior performance across diverse cell and tissue types, and the enhancer locations are significantly more refined. We show that, by incorporating base-resolution methylation data, REPTILE greatly improves upon current methods for annotation of enhancers across a variety of cell and tissue types. REPTILE is available at https://github.com/yupenghe/REPTILE/.
The Synthesis of β-(3-Amino-4-hydroxyphenyl)-ethanol; 3-Aminotyrosol (1950)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTThe Synthesis of β-(3-Amino-4-hydroxyphenyl)-ethanol; 3-AminotyrosolHenry M. Woodburn and Calvin F. StuntzCite this: J. Am. Chem. Soc. 1950, 72, 3, 1361–1364Publication Date (Print):March 1, 1950Publication History Published online1 May 2002Published inissue 1 March 1950https://pubs.acs.org/doi/10.1021/ja01159a077https://doi.org/10.1021/ja01159a077research-articleACS PublicationsRequest reuse permissionsArticle Views270Altmetric-Citations14LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Power Amplifier Linearization Using a Diode (2006)

The emphasis on higher data rates and spectral efficiency has driven the industry towards linear modulation techniques such as QPSK, 64 QAM, or multi-carrier configurations. The result is a signal with a fluctuating envelope which generates intermodulation distortion (IMD) from the power amplifiers. Since most of the IM power appears as interference in adjacent channels, it is important to use a highly linear power amplifier. This paper describes the novel approach of using a diode as an active linearizer in view of minimizing non linear distortion introduced by the power amplifiers in wireless communication circuits. In case of pHEMTs, this technique reduces the effect of nonlinear terms generated by the voltage variable input capacitance of the active device. A two stage power amplifier using 0.5 mum gate length GaAs pHEMT process shows that the power amplifier is linear up to 5 dBm of input power after linearization, where as it becomes nonlinear at -4 dBm of input power before linearization
Recombinant poxvirus boosting of DNA-primed rhesus monkeys augments peak but not memory T lymphocyte responses (2004)

Although a consensus has emerged that an HIV vaccine should elicit a cytotoxic T lymphocyte (CTL) response, the characteristics of an effective vaccine-induced T lymphocyte response remain unclear. We explored this issue in the simian human immunodeficiency virus/rhesus monkey model in the course of assessing the relative immunogenicity of vaccine regimens that included a cytokine-augmented plasmid DNA prime and a boost with DNA or recombinant pox vectors. Recombinant vaccinia virus, recombinant modified vaccinia Ankara (MVA), and recombinant fowlpox were comparable in their immunogenicity. Moreover, whereas the magnitude of the peak vaccine-elicited T lymphocyte responses in the recombinant pox virus-boosted monkeys was substantially greater than that seen in the monkeys immunized with plasmid DNA alone, the magnitudes of recombinant pox boosted CTL responses decayed rapidly and were comparable to those of the DNA-alone-vaccinated monkeys by the time of viral challenge. Consistent with these comparable memory T cell responses, the clinical protection seen in all groups of experimentally vaccinated monkeys was similar. This study, therefore, indicates that the steady-state memory, rather than the peak effector vaccine-elicited T lymphocyte responses, may be the critical immune correlate of protection for a CTL-based HIV vaccine.
Embedding the Future of Regenerative Medicine into the Open Epigenomic Landscape of Pluripotent Human Embryonic Stem Cells. (2013)

It has been recognized that pluripotent human embryonic stem cells (hESCs) must be transformed into fate-restricted derivatives before use for cell therapy. Realizing the therapeutic potential of pluripotent hESC derivatives demands a better understanding of how a pluripotent cell becomes progressively constrained in its fate options to the lineages of tissue or organ in need of repair. Discerning the intrinsic plasticity and regenerative potential of human stem cell populations reside in chromatin modifications that shape the respective epigenomes of their derivation routes. The broad potential of pluripotent hESCs is defined by an epigenome constituted of open conformation of chromatin mediated by a pattern of Oct-4 global distribution that corresponds genome-wide closely with those of active chroma tin modifications. Dynamic alterations in chromatin states correlate with loss-of-Oct4-associated hESC differentiation. The epigenomic transition from pluripotence to restriction in lineage choices is characterized by genome-wide increases in histone H3K9 methylation that mediates global chromatin-silencing and somatic identity. Human stem cell derivatives retain more open epigenomic landscape, therefore, more developmental potential for scale-up regeneration, when derived from the hESCs <i><b>in vitro</b></i><b>than from the CNS tissue</b><i><b>in vivo</b></i> . Recent technology breakthrough enables direct conversion of pluripotent hESCs by small molecule induction into a large supply of lineage-specific neuronal cells or heart muscle cells with adequate capacity to regenerate neurons and contractile heart muscles for developing safe and effective stem cell therapies. Nuclear translocation of NAD-dependent histone deacetylase SIRT1 and global chromatin silencing lead to hESC cardiac fate determination, while silencing of pluripotence-associated hsa-miR-302 family and drastic up-regulation of neuroectodermal Hox miRNA hsa-miR-10 family lead to hESC neural fate determination. These recent studies place global chromatin dynamics as central to tracking the normal pluripotence and lineage progres sion of hESCs. Embedding lineage-specific genetic and epigenetic developmental programs into the open epigenomic landscape of pluripotent hESCs offers a new repository of human stem cell therapy derivatives for the future of regenerative medicine.
Th1 Adjuvant<i>N</i>-Acetyl-<scp>d</scp>-Glucosamine Polymer Up-Regulates Th1 Immunity but Down-Regulates Th2 Immunity against a Mycobacterial Protein (MPB-59) in Interleukin-10-Knockout and Wild-Type Mice (2001)

Treatment of mice with heat-killed (HK) Mycobacterium bovis BCG or 1- to 10-microm chitin particles (nonantigenic N-acetyl-D-glucosamine polymers) is known to induce innate immune responses, including gamma interferon (IFN-gamma) production, which plays a Th1 adjuvant role. However, HK BCG further induces prostaglandin E2-releasing spleen macrophages (Mphi) (PGE2-Mphi), which potentially inhibit Th1 adjuvant activities. We found that chitin particles did not induce PGE2-Mphi formation. To further assess whether chitin has Th1 adjuvant effects, interleukin-10 (IL-10)-knockout (KO) mice and their wild-type (WT, C57BL/6) controls were immunized with a 30-kDa MPB-59 mycobacterial protein mixed with chitin. Immunization with MPB-59 alone induced Th2 responses, characterized by increases in total serum immunoglobulin E (IgE) and specific serum IgG1 levels and spleen Th2 cells producing IL-4, IL-5, and IL-10. No IFN-gamma-producing spleen Th1 cells, specific serum IgG2a, or delayed-type hypersensitivity (DTH) footpad reactions were detected. On the other hand, chitin-MPB-59 immunization significantly increased spleen Th1 responses, DTH reaction, and serum IgG2a levels along with decreases of Th2 responses. The magnitude of these Th1 adjuvant effects was greater in IL-10-KO mice than in WT mice. In contrast, immunization with HK BCG-MPB-59 showed little or no Th1 adjuvant effect. These data indicate that chitin has a unique Th1 adjuvant effect on the development of Th1 immunity against a mycobacterial antigen. IL-10 down-regulates the adjuvant effect of chitin.