gebhart/patrepeval huggingface dataset:
The Measles Virus Fusion Protein Transmembrane Region Modulates Availability of an Active Glycoprotein Complex and Fusion Efficiency (2008)

The glycoprotein complex of paramyxoviruses mediates receptor binding and membrane fusion. In particular, the measles virus (MV) fusion (F) protein executes membrane fusion, after receptor binding by the hemagglutinin (H) protein. Structures and single amino acids influencing fusion function have been identified in the F-protein ectodomain and cytoplasmic tail, but not in its transmembrane (TM) region. Since this region influences function of the envelope proteins of other viruses, we examined its role in the MV F protein. Alanine-scanning mutagenesis revealed that an F protein with a single mutation of a central TM region leucine (L507A) was more fusogenic than the unmodified F protein while retaining similar kinetics of proteolytic processing. In contrast, substitution of residues located near the edges of the lipid bilayer reduced fusion activity. This was true not only when the mutated F proteins were coexpressed with H but also in the context of infections with recombinant viruses. Analysis of the H-F complexes with reduced fusion activities revealed that more precursor (F(0)) than activated (F(1+2)) protein coprecipitated with H. In contrast, in complexes with enhanced fusion activity, including H-F(L507A), the F(0)/F(1+2) ratio shifted toward F(1+2). Thus, fusion activity correlated with an active F-H protein complex, and the MV F protein TM region modulated availability of this complex.
Abstract 285: Granzymes: Major Players in Vascular Remodelling, Atherosclerosis and Longevity (2007)

Introduction: Granzymes A and B (GrA/GrB) are cytotoxic proteases that are released by immune cells to eliminate target cells. GrB is present in human vessels and its expression corresponds to increased disease severity. In addition to their cytotoxic roles, in conditions of chronic inflammation, GrA and GrB may contribute to the degradation of extracellular matrix (ECM) proteins leading to tissue degeneration. Hypothesis: GrA and GrB levels are elevated in atherosclerotic patients and play a key role in the degradation of ECM and atherosclerosis. Methods: ApoE −/− x GrB −/− double knockout (apoE/GrB-DKO) mice were generated. C57-wt, GrB-KO, apoE-KO or apoE/GrB-DKO mice were fed a high fat diet for 30 weeks, sacrificed, tissues processed and lesion morphology and morphometry assessed. GrA and GrB levels were also measured in human plasma from patients with or without clinically evident atherosclerosis by ELISA. GrA/GrB-mediated ECM proteolytic activity was also assessed. Results: GrB deficiency significantly reduced the development of xanthomatosis, hair loss and atherosclerosis in the apoE-KO mice. GrB deficiency resulted in a marked reduction of elastin degradation in both the skin and blood vessels. GrB was found to co-localize to elastin fibres in atherosclerotic plaques and was capable of binding to, and cleaving elastin in vitro. ECM cleavage assays demonstrated that GrA and GrB cleave other ECM such as fibronectin. Preliminary studies indicate that GrB deficiency increases the lifespan of the apoE-KO mice as the apoE/GrB-DKO mice can survive up to 60 weeks of age on a high fat diet with no external indication of disease, skin degeneration or hair loss. In humans, preliminary evidence indicates that GrA/GrB levels are elevated in atherosclerosis. Smoking also appears to elevate plasma granzyme levels. Conclusions: During chronic inflammation, granzymes accumulate extracellularly and exhibit proteolytic activity towards extracellular matrix proteins that results in vascular remodeling and atherosclerosis with age. Attenuation of GrB resulted not only in a significant reduction of atherosclerosis, but also prolonged the lifespan of apoE-KO mice.
Selective cross-linking of oligosilazanes to tailored meltable polysilazanes for the processing of ceramic SiCN fibres (2013)

An interesting alternative for the processing of non-oxide ceramic fibres at lower costs than that for the current commercially available fibre types was developed by modifying different commercially available liquid oligosilazanes (ML33 and HTT1800) into polysilazanes by selective cross-linking via the N–H and Si–H groups with tetra-n-butylammoniumfluoride (TBAF) as a catalyst. Termination of the reaction with calcium borohydride allows the processing of meltable solid polysilazanes (ML33S and HTTS) with tailored chemical and thermal properties, to fulfil the requirements for the melt spinning of mechanically stable and homogeneous polymeric fibres. The chemical and thermal stability of the polysilazanes ML33S and HTTS were investigated by using GPC, DSC and rheological measurements. These techniques indicate the dependency of the molecular weight and glass temperature on the catalytical cross-linking conditions. Polymers with up to ∼10 000 g mol−1 show glass–liquid transition (Tg) between 65 and 81 °C and viscoelasticity, which are essential properties for the melt-spinning process. The thermal stability of ML33S is ensured up to 220 °C. In contrast the thermal stability of HTTS is limited to 170 °C due to the presence of vinyl-groups. The viscoelastic behaviour of the polymer melts, measured by oscillatory rheometry, and the sufficient thermal stability allowed the continuous processing of stable green fibres by melt spinning in the temperature range of 110 to 130 °C. After fast electron beam irradiation curing of the green fibres and pyrolysis of continuous amorphous ceramic SiCN fibres from both ML33S and HTTS polysilazanes were successfully synthesized, while a defined Tg point influences the shape and the smoothness positively.
먹거리 대안체계와 공공급식 (2014)

이 연구는 서울시 공공급식의 실태와 문제점을 파악하면서, 새롭게 설계될 공공급식의 원칙과 기준을 제시하고자 하였다. 특히 공공급식을 통한 대안체계의 구축 가능성을 분석하고자 하였다. 서울시의 공공급식 프로그램을 분석한 결과, 유럽의 여러도시 사례들처럼 대안적이지도, 창조적이지도, 혁신적이지도 않았다. 무엇보다도 공공과 지역, 그리고 균형 잡힌 영양 관점이...
A pilot study of recombinant insulin-like growth factor-1 in seven multiple sclerosis patients (2002)

The purpose of this open-label, crossover study was to determine the safety and efficacy of recombinant insulin-like growth factor-1 (rhIGF-1) using magnetic resonance imaging (MRI) and clinical measures of disease activity in seven multiple sderosis (MS) patients. Monthly clinical and MPI examinations were performed during a 24-week baseline and a 24-week treatment period with rhIGF-1. The primary outcome measure was contrast enhancing lesion (CEL) frequency on treatment compared to baseline. Secondary outcome measures included dinical and MRI measures of disease activity including: white matter lesion load (WMLL), magnetization transfer ratio (MTR), T1-Hypointensity volume, cervical spine cross-sectional area and proton magnetic resonance spectroscopic (MRS) imaging for determining regional metabolite ratios. rhIGF-1 (Cephalon) was administered at a dose of 50 mg subcutaneously twice a day for 6 months. rhIGF-1 was safe and well tolerated with no severe adverse reactions. There was no significant difference between baseline and treatment periods for any MRI or clinical measures of disease activity. Although rhIGF-1 did not alter the course of disease in this small cohort of MS patients, the drug was well tolerated. Further studies using rhIGF-1 alone or in combination with other therapies may be of value because of the proposed mechanism of action of this growth factor on the oligodendrocyte and remyelination.
The Investiture Controversy of the Middle Ages, 1075-1122: Agreement and Disagreement among Historians (1973)

Journal Article The Investiture Controversy of the Middle Ages, 1075–1122: Agreement and Disagreement among Historians Get access Sandy B. Hicks Sandy B. Hicks presently writing the last chapter of his dissertation University of California at Santa Barbara Search for other works by this author on: Oxford Academic Google Scholar Journal of Church and State, Volume 15, Issue 1, Winter 1973, Pages 5–20, https://doi.org/10.1093/jcs/15.1.5 Published: 01 January 1973
Automated Coverage-Driven Test Data Generation Using Dynamic Symbolic Execution (2014)

Recently code transformations or tailored fitness functions are adopted to achieve coverage (structural or logical criterion) driven testing to ensure software reliability. However, some internal threats like negative impacts on underlying search strategies or local maximum exist. So we propose a dynamic symbolic execution (DSE) based framework combined with a path filtering algorithm and a new heuristic path search strategy, i.e., predictive path search, to achieve faster coverage-driven testing with lower testing cost. The empirical experiments (three open source projects and two industrial projects) show that our approach is effective and efficient. For the open source projects w.r.t branch coverage, our approach in average reduces 25.5% generated test cases and 36.3% solved constraints than the traditional DSE-based approach without path filtering. And the presented heuristic strategy, on the same testing budget, improves the branch coverage by 26.4% and 35.4% than some novel search strategies adopted in KLEE and CREST.
Driven-shield amplifier for the recording of broadband, nano-amp scale, current transients from sources located inside a vacuum chamber (1995)

A fast, high-sensitivity amplifier has been developed and successfully used to record transient photoconductivity current of high-impedance, hydrogenated amorphous silicon thin film samples mounted inside a cryostat. The key feature of this amplifier is adjustable, positive feedback to the guard conductor of the input coaxial line. The amplifier circuit is located entirely outside the cryostat. It is characterized by a useful bandwidth from DC to 5 MHz, current to voltage gain in excess of 8*106 V A-1, good linearity and low noise. Averaging over several hundred waveforms with the help of digital storage oscilloscope improves signal-to-noise ratios dramatically and allows transient photocurrents of the order of 1 nA to be accurately followed in a microsecond time scale. The amplifier was also successfully used to record the ion current of a Faraday cup in time-of-flight mass spectroscopy.
C-Myc binds to 5′ flanking sequence motifs of the dihydrofolate reductase gene in cellular extracts: role in proliferation (1994)

The dihydrofolate reductase is a key enzyme of the folate metabolism which supplies the cell with dTTPs for DNA synthesis. Using cellular extracts, we demonstrate the formation of c-Myc/Max heterodimers at the dihydrofolate reductase (DHFR) 5' flanking CANNTG (E-box) motifs. The presence of these complexes correlates with c-Myc levels and active cellular proliferation.
Human Amnion Epithelial Cell Transplantation Abrogates Lung Fibrosis and Augments Repair (2010)

hAECs offer promise as a cellular therapy for alveolar restitution and to reduce lung inflammation and fibrosis.
Binding specificities of heat-labile enterotoxins isolated from porcine and human enterotoxigenic <i>Escherichia coli</i> for different gangliosides (1989)

The binding specificities of heat-labile enterotoxins (LTp and LTh) isolated from porcine and human enterotoxigenic Escherichia coli on human erythrocytes were studied by competitive binding assays using different gangliosides as inhibitors. The binding of 125I-labeled LTp to neuraminidase-treated human type A erythrocytes was most effectively inhibited by ganglioside GM1. Ganglioside GM1 was 11 and 105 times more potent than gangliosides GD1b and GM2, respectively. Gangliosides GD1a, GT1b, and GM3 were much less potent. Similar results were also obtained in competitive binding assays with the 125I-labeled B subunit of LTh and neuraminidase-treated human type B erythrocytes, and in those with 3H-labeled ganglioside GM1 and LTp-coupled Sepharose 4B. The binding of 3H-labeled ganglioside GM1 to LTp was not effectively inhibited by galactose-beta(1----3)N-acetyl-D-galactosamine at the highest concentration used. These findings suggest that the combining sites of LTp and LTh may be specific for at least the galactose-N-acetyl-D-galactosamine-galactose (N-acetyl-neuraminic acid) portion of ganglioside GM1.
Genomic selection using regularized linear regression models: ridge regression, lasso, elastic net and their extensions (2012)

Genomic selection (GS) is emerging as an efficient and cost-effective method for estimating breeding values using molecular markers distributed over the entire genome. In essence, it involves estimating the simultaneous effects of all genes or chromosomal segments and combining the estimates to predict the total genomic breeding value (GEBV). Accurate prediction of GEBVs is a central and recurring challenge in plant and animal breeding. The existence of a bewildering array of approaches for predicting breeding values using markers underscores the importance of identifying approaches able to efficiently and accurately predict breeding values. Here, we comparatively evaluate the predictive performance of six regularized linear regression methods-- ridge regression, ridge regression BLUP, lasso, adaptive lasso, elastic net and adaptive elastic net-- for predicting GEBV using dense SNP markers. We predicted GEBVs for a quantitative trait using a dataset on 3000 progenies of 20 sires and 200 dams and an accompanying genome consisting of five chromosomes with 9990 biallelic SNP-marker loci simulated for the QTL-MAS 2011 workshop. We applied all the six methods that use penalty-based (regularization) shrinkage to handle datasets with far more predictors than observations. The lasso, elastic net and their adaptive extensions further possess the desirable property that they simultaneously select relevant predictive markers and optimally estimate their effects. The regression models were trained with a subset of 2000 phenotyped and genotyped individuals and used to predict GEBVs for the remaining 1000 progenies without phenotypes. Predictive accuracy was assessed using the root mean squared error, the Pearson correlation between predicted GEBVs and (1) the true genomic value (TGV), (2) the true breeding value (TBV) and (3) the simulated phenotypic values based on fivefold cross-validation (CV). The elastic net, lasso, adaptive lasso and the adaptive elastic net all had similar accuracies but outperformed ridge regression and ridge regression BLUP in terms of the Pearson correlation between predicted GEBVs and the true genomic value as well as the root mean squared error. The performance of RR-BLUP was also somewhat better than that of ridge regression. This pattern was replicated by the Pearson correlation between predicted GEBVs and the true breeding values (TBV) and the root mean squared error calculated with respect to TBV, except that accuracy was lower for all models, most especially for the adaptive elastic net. The correlation between the predicted GEBV and simulated phenotypic values based on the fivefold CV also revealed a similar pattern except that the adaptive elastic net had lower accuracy than both the ridge regression methods. All the six models had relatively high prediction accuracies for the simulated data set. Accuracy was higher for the lasso type methods than for ridge regression and ridge regression BLUP.
Differential effects of interleukin-15 (IL-15) and IL-2 on human neutrophils: modulation of phagocytosis, cytoskeleton rearrangement, gene expression, and apoptosis by IL-15 (1996)

Human neutrophils have been shown recently to express both the beta and the gamma chains of the interleukin-2 receptor (IL-2R). IL-15, a cytokine that has recently been cloned and characterized, was found to share many of the biological functions of IL-2 and is known to mediate signals through IL-2R beta and IL-2R gamma. In recent studies, we observed that IL-2 exerts few effects on various neutrophil functions, but information on IL-15-neutrophil interactions is lacking. In this study, we observed that IL-15, in contrast to IL-2, induces important morphological cell shape changes that are typical of activated neutrophils. Furthermore, phagocytosis of opsonized sheep red blood cells was significantly increased by IL-15 but not by IL-2. However, similar to IL-2, IL-15 did not modulate the oxidative burst response. Furthermore, we observed that de novo RNA synthesis is increased in neutrophils by IL-15 along with de novo protein synthesis, whereas no significant effect of IL-2 was noted. Among the different proteins that were found to be upregulated by IL-15, one was identified by microsequencing as the cytoskeletal protein actin. Finally, we found that IL-15 delays apoptosis of neutrophils more efficiently than IL-2 when evaluated by both microscopic observations and flow cytometry procedures. Furthermore, this phenomenon was dose-dependent (10 to 500 ng/mL), and, at 500 ng/mL, IL-15 delayed apoptosis as strongly as granulocyte-macrophage colony-stimulating factor. This study is the first to show that IL-15 is a significant neutrophil agonist. Moreover, in view of the differential effects of IL-15 and IL-2 on this cell type, our results support the existence of a specific IL-15R component(s) on human neutrophils.
Analysis of bus hierarchies for multiprocessors (1988)

In order to build large shared-memory multiprocessor systems that take advantage of current hardware-enforced cache coherence protocols, an interconnection network is needed that acts logically as a single bus while avoiding the electrical loading problems of a large bus. This paper develops models of bus delay and bus throughput to aid in optimizing the design of such a network. These models are used to derive a method for determining the maximum number of processors that can be supported by each of several bus organizations including conventional single-level buses, two-level bus hierarchies, and binary tree interconnections. An example based on a TTL bus is presented to illustrate the methods and to show that shared-memory multiprocessors with several dozen processors are feasible using a simple two-level bus hierarchy.
Role of Novel Choline Binding Proteins in Virulence of <i>Streptococcus pneumoniae</i> (2000)

The choline binding proteins (CBPs) are a family of surface proteins noncovalently bound to the phosphorylcholine moiety of the cell wall of Streptococcus pneumoniae by a conserved choline binding domain. Six new members of this family were identified, and these six plus two recently described cell wall hydrolases, LytB and LytC, were characterized for their roles in virulence. CBP-deficient mutants were constructed and tested for adherence to eukaryotic cells, colonization of the rat nasopharynx, and ability to cause sepsis. Five CBP mutants, CbpD, CbpE, CbpG, LytB, and LytC, showed significantly reduced colonization of the nasopharynx. For CbpE and -G this was attributable to a decreased ability to adhere to human cells. CbpG, a putative serine protease, also played a role in sepsis, the first observation of a pneumococcal virulence determinant strongly operative both on the mucosal surface and in the bloodstream.
Determinants of Success (2012)

Psychology
As the election races in the United States enter the home stretch, candidates have begun to appear regularly on television broadcasts. Viewer judgments of competence, based on seeing the faces of candidates, have been shown to predict election outcomes. Chen et al. have extended this approach to ask whether judgments of candidates' social competence—defined as the capacity for effective functioning in social interactions—are related to outcomes in an individualistic society (the United States) and a collectivist society (Taiwan). They replicate the earlier result that a judgment of competence does predict winners in the United States, as it does in Taiwan, and they find that judgments of social competence are also predictive, though only for elections in Taiwan. Correlating measures of individualism and collectivism from these study participants along with their own voting choices demonstrated that competence was weighted more heavily by more individualistic voters; similarly, social competence was linked to the choices that collectivist voters made.

J. Exp. Soc. Psychol. 48 , 10.1016/j.jesp.2012.07.006 (2012).
[Report of experiences with 31 surgically treated patients with deformity of the femur shaft]. (1989)

In 1986/1987 we made a follow-up of 31 patients having undergone a surgical treatment of a deformity of the femur shaft in 1971 through 1981. For a better interpretation of the results we divided these patients into three partly overlapping groups: Patients with deformities of the angel or rotation, patients being shortened in case of length-differences and those being elongated. Finally we investigated, that in nine out of ten cases we got a good result by correcting angle-and rotation-deformities and by the shortening osteotomy. The extension osteotomy caused more complications and not so good results than those of the first two groups. We recognized, that the follow-up treatment was very long, and the method of the operation was not standardized but was adapted to the circumstances of the single case.
Characterization of ultrasound-potentiated fibrinolysis in vitro (1993)

We have characterized the effects of ultrasound on fibrinolysis in vitro to investigate the mechanism of ultrasonic potentiation of fibrinolysis and to identify potentially useful ultrasound parameters for therapeutic application. Radiolabeled clots in thin walled tubes were exposed to ultrasound fields in a water bath at 37 degrees C, and lysis was measured by solubilization of radiolabel. Ultrasound accelerated lysis of plasma, whole blood, and purified fibrin clots mediated by recombinant tissue-type plasminogen activator (rt-PA), urokinase, or streptokinase, but ultrasound by itself caused no clot solubilization. The degree of ultrasonic potentiation was dependent on plasminogen activator concentration, increasing from 2.2-fold at a streptokinase concentration of 75 U/mL to 5.5-fold at 250 U/mL in a 1 MHz ultrasound field at 4 W/cm2. Ultrasound exposure resulted in heating due to absorption by the plastic tube, but the temperature increase was insufficient to account for the increase in clot lysis rate, indicating that the primary effect was nonthermal. Ultrasound did not accelerate hydrolysis of a peptide substrate by rt-PA and did not alter the rate of plasmic degradation of fibrinogen, indicating that the augmentation of enzymatic fibrinolysis required the presence of a fibrin gel. The acceleration of fibrinolysis by ultrasound was greater at higher intensities and duty cycles and was maximum at frequencies between 1 and 2.2 MHz, but decreased at 3.4 MHz. These findings suggest that ultrasound accelerates enzymatic fibrinolysis by increasing transport of reactants through a cavitation-related mechanism.
Brain-Derived Neurotrophic Factor mRNA and Protein Are Targeted to Discrete Dendritic Laminas by Events That Trigger Epileptogenesis (2004)

Dendritic targeting of mRNA and local protein synthesis are mechanisms that enable neurons to deliver proteins to specific postsynaptic sites. Here, we demonstrate that epileptogenic stimuli induce a dramatic accumulation of BDNF mRNA and protein in the dendrites of hippocampal neurons in vivo. BDNF mRNA and protein accumulate in dendrites in all hippocampal subfields after pilocarpine seizures and in selected subfields after other epileptogenic stimuli (kainate and kindling). BDNF accumulates selectively in discrete dendritic laminas, suggesting targeting to synapses that are active during seizures. Dendritic targeting of BDNF mRNA occurs during the time when the cellular changes that underlie epilepsy are occurring and is not seen after intense stimuli that are non-epileptogenic, including electroconvulsive seizures and high-frequency stimulation. MK801, an NMDA receptor antagonist that can prevent epileptogenesis but not acute seizures, prevents the dendritic accumulation of BDNF mRNA, indicating that dendritic targeting is mediated via NMDA receptor activation. Together, these results suggest that dendritic accumulation of BDNF mRNA and protein plays a critical role in the cellular changes leading to epilepsy.