gebhart/patrepeval huggingface dataset:
Calibration of Raman Spectroscopy at 1064 nm for Beeswax Quantification (2007)

In the early sixties, coating with molten beeswax was considered a valuable method for preventing the erosive action of weather and/or salinity on the surface of granite sculptures and monuments. This technique had been traditionally employed by the Galician stoneworkers for partial repair of historical monuments. For this purpose, beeswax was applied to the Renaissance Frieze in the Cloister of the Cathedral of Santiago de Compostela in Galicia (Northwest Spain). The beeswax treatment was counterproductive. An intense grain disaggregation of the granite can be observed in the Frieze, owing to the crystallization of salts. As a consequence, the restoration of the Cloister presents many problems. This fact imposes the need for an exhaustive study of the wax-stone system and the demand for a nondestructive method to measure the beeswax thickness at the stone surface. The aim of this contribution is the evaluation of a laser-based method, namely Fourier transform Raman spectroscopy, for analyzing the wax presence in specific rocky material of the Frieze to be restored. To obtain a reliable quantitative calibration, we prepared beeswax films of five different thicknesses on aluminum plates (26.6-97.2 microm). Nylon was selected as external reference to obtain the Raman emission independently from the laser beam power. The ratios of the relative intensities of the Raman bands corresponding to beeswax and nylon were used for the construction of a calibration curve used for the quantitative analysis. The intensities at 2879 cm(-1), I(c2879), and 2880 cm(-1), I(n2880), for beeswax and nylon, respectively, in the Raman spectra of each material were used. A linear dependence was found for the ratio I(c2879)/I(n2880) with the beeswax thickness. The validation of this calibration curve was tested with a second validation set of samples that spans beeswax film thicknesses both inside and outside the calibration range (12.1 to 180 mum), in order to evaluate in addition the accuracy of the model at extrapolation. Without complex sample preparation, near-infrared Raman spectroscopy resulted in an effective technique for localizing the wax with lateral resolution of tens of micrometers, and for determining wax layer thickness in the stone with an uncertainty of a few micrometers.
The concentrations of glutamine and ammonia in commercially available cell culture media (1993)

The amino acid glutamine is an essential nutrient for cells in culture. In aqueous solutions such as liquid culture media, glutamine spontaneously decomposes into ammonia. In this study, we examined the toxicity of ammonia for two different cell lines. In mouse hybridoma cell cultures, viable cell counts were reduced at exogenous ammonia concentrations of 1000 microM. In the human promyelocytic cell line however, viable cell counts were shown to be reduced at exogenous ammonia concentrations of 300 microM. Next, we determined ammonia and glutamine levels in 11 commercially available media on the day of delivery. It was found that all media contained significantly less glutamine than prescribed. Ammonia was found in all media with concentrations ranging up to 1000 microM. Storage at both 4 degrees C and 20 degrees C caused a further degradation of glutamine and significant accumulation of ammonia in all media. The degradation curves of the various media were used to calculate the first order degradation constant k, which can be used to determine the kinetics of the spontaneous decomposition in culture media. These results suggest that precautions must be taken to avoid the deterioration of commercially available culture media, because of the decay of glutamine. Long storage times lead to a rapid decay of glutamine and an accumulation of the toxic degradation product ammonia.
Aerosol formation from sulphur dioxide in the presence of ozone and olefinic hydrocarbons (1972)

The gas phase oxidation of sulphur dioxide in the presence of ozone and olefinic hydrocarbons has been studied at p.p.m. concentrations. The rate of oxidation was determined by measurement of the sulphuric acid aerosol formed from radioactive 35SO2. Sulphur dioxide and ozone do not react at an appreciable rate at low concentration, but in the presence of olefins a rapid oxidation of sulphur dioxide occurs. The kinetics of the reaction are consistent with a mechanism in which sulphur dioxide is oxidized in a fast reaction with a short-lived intermediate produced in the initial reaction of ozone with the olefinic double bond. This oxidation process is of considerable significance in the atmospheric chemistry of sulphur dioxide.
Network management challenges for joint forces interoperability (2011)

There are numerous challenges one can face while creating joint network management in tactical networks. Although many of these challenges are political, there are significant technical challenges that are currently being addressed by the research community. This article presents some of the challenges faced by the NM architecture from the tactical edge and across the global information grid, where IPbased networks and radios must work together seamlessly in joint missions in the presence of encryption tunnels. It shows some cases where unconventional NM techniques must be considered in order to meet the objectives of joint missions. These techniques should be considered when different networks from the same force (e.g., the U.S. Army), joint U.S. military services' networks, and coalition forces' networks interface together. The article is divided into three main sections. The first presents some of the urgent challenges facing NM interoperability across the GIG, while the second covers an architectural approach that relies on gateway nodes and abstraction techniques. The third section presents a conflict resolution case showing how different tactical network managers need to interface to each other with techniques that are not considered in commercial networks.
Overview of battery power regulation and storage (1991)

Battery energy systems are an electric utility technology whose applications are not yet fully demonstrated. The applications and benefits achieved by existing and planned facilities, and those that are possible, are discussed. The performance of existing facilities and the benefits predicted by models show that battery energy systems can be an economically attractive addition to the equipment now used to generate and transmit electric power.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
The Reactive Ion Etching of Molybdenum and Bilayer Metallization Systems Containing Molybdenum (1988)

Refractory metals such as molybdenum (Mo) are seeing increased usage in VLSI circuit designs, primarily due to their thermal stability. Properties desirable for a VLSI metallization system with contact to silicon include high metal conductivity, good thermal stability, absence of spiking, minimal electromigration, corrosion resistance, good adhesion, and low contact resistance. It is very difficult to fulfill all of these requirements with just a single molybdenum layer. Other metals such as Cr, Ti, Al, or can be used as thin underlayers to obtain the properties desired. We will describe processes for the reactive ion etching of Mo, and recent work in which chloro/fluoro gas mixtures such as , , and have been used to etch bilayer metallization systems containing Mo, particularly . In this study, the effects of different cathode cover plate materials, plasma chemistries, and other processing parameters on the etch rate, selectivities, and sidewall profiles were investigated. An analysis of plasma etch chemistry, using the results of emission spectroscopy, is presented. The methods used for the metal deposition and processing of Mo are also shown to be key factors in determining etching characteristics.
Cloning of human acetyl‐CoA carboxylase cDNA (1994)

Acetyl-CoA carboxylase is the rate-limiting enzyme in the biogenesis of long-chain fatty acids. In order to understand the mechanisms that regulate human acetyl-CoA carboxylase at the gene level, and the relationship between its structure and function, cDNA clones for human acetyl-CoA carboxylase have been isolated and sequenced. Human acetyl-CoA-carboxylase cDNA contains 7020 nucleotides encoding a protein of 2340 amino acids with a calculated relative molecular mass of 264575. The human enzyme shows approximately 85% identity in nucleotide sequence with previously cloned rat acetyl-CoA carboxylase, and shows 90% identity in the amino acid sequence. Two human acetyl-CoA-carboxylase mRNA species, which differ in the 5' untranslated region with the same coding sequence, have been identified. The sequence analysis reveals that type I and type II acetyl-CoA-carboxylase mRNA contain 313- and 173-base-long 5' untranslated regions, respectively. The first 240 nucleotides in the 5' untranslated region of type I acetyl-CoA-carboxylase mRNA replace the first 100 nucleotides of the (G + C)-rich region of the 5' untranslated region of the type II mRNA. These two species of mRNAs are the only species of human ACC mRNA which have been detected compared to at least five species in rat tissues, and they are expressed in a tissue-specific manner.
LOCUS (2017)

Application requirements, such as real-time response, are pushing wearable devices to leverage more powerful processors inside the SoC (system on chip). However, existing wearable devices are not well suited for such challenging applications due to poor performance, and the conventional powerful many-core architectures are not appropriate either due to the stringent power budget in this domain. We propose LOCUS—a low-power, customizable, many-core processor for next-generation wearable devices. LOCUS combines customizable processor cores with a customizable network on a message-passing architecture to deliver very competitive performance/watt—an average 3.1× compared to quad-core ARM processors used in state-of-the-art wearable devices. A combination of full system simulation with representative applications from the wearable domain and RTL synthesis of the architecture show that 16-core LOCUS achieves an average 1.52× performance/watt improvement over a conventional 16-core shared memory many-core architecture. A dynamic power management mechanism is proposed to further decrease the power consumption in both computation and communication, which improves the performance/watt of LOCUS by 1.17×.
Whole body sodium MRI at 3T using an asymmetric birdcage resonator and short echo time sequence: first images of a male volunteer (2012)

Sodium magnetic resonance imaging (²³Na MRI) is a non-invasive technique which allows spatial resolution of the tissue sodium concentration (TSC) in the human body. TSC measurements could potentially serve to monitor early treatment success of chemotherapy on patients who suffer from whole body metastases. Yet, the acquisition of whole body sodium (²³Na) images has been hampered so far by the lack of large resonators and the extremely low signal-to-noise ratio (SNR) achieved with existing resonator systems. In this study, a ²³Na resonator was constructed for whole body ²³Na MRI at 3T comprising of a 16-leg, asymmetrical birdcage structure with 34 cm height, 47.5 cm width and 50 cm length. The resonator was driven in quadrature mode and could be used either as a transceiver resonator or, since active decoupling was included, as a transmit-only resonator in conjunction with a receive-only (RO) surface resonator. The relative B₁-field profile was simulated and measured on phantoms, and 3D whole body ²³Na MRI data of a healthy male volunteer were acquired in five segments with a nominal isotropic resolution of (6 × 6 × 6) mm³ and a 10 min acquisition time per scan. The measured SNR values in the ²³Na-MR images varied from 9 ± 2 in calf muscle, 15 ± 2 in brain tissue, 23 ± 2 in the prostate and up to 42 ± 5 in the vertebral discs. Arms, legs, knees and hands could also be resolved with applied resonator and short time-to-echo (TE) (0.5 ms) radial sequence. Up to fivefold SNR improvement was achieved through combining the birdcage with local RO surface coil. In conclusion, ²³Na MRI of the entire human body provides sub-cm spatial resolution, which allows resolution of all major human body parts with a scan time of less than 60 min.
Fas-mediated apoptosis in human prostatic carcinoma cell lines. (1997)

Of six prostatic carcinoma cell lines examined (ALVA31, DU145, JCA1, LNCaP, ND1, and PC3) by flow cytometric analysis, all were found to be positive for Fas antigen. Furthermore, of the prostate tissue specimens studied (six cases), all revealed Fas expression in benign and malignant epithelial cells. The agonistic anti-Fas monoclonal antibody (IPO-4) induced apoptosis in only two of six cell lines investigated, PC3 and ALVA31. PCR analysis indicated that all cell lines expressed normal transmembrane and death domains of Fas antigen. Using Western blot analysis, we found abundant expression of p53 in the cytoplasm of two Fas-resistant cell lines, DU145 and ND1, and did not find p53 in two Fas-sensitive cell lines, PC3 and ALVA31. Western blot and PCR analysis did not show consistent differences between cell lines examined in the expression of Bcl-2, Bcl-X(L), Bcl-X(S), and Bak. In contrast, Bax protein was not detected in two Fas-resistant cell lines, DU145 and ND1. We also showed that three Fas-resistant cell lines, DU145, ND1, and JCA1, expressed CD40, whereas the two Fas-sensitive cell lines, PC3 and ALVA31, were CD40 negative. Fas-sensitive cell lines were transfected with the cDNA encoding CD40, and the CD40-positive transfectant became more resistant to growth inhibition mediated by treatment with TNF-alpha and anti-Fas monoclonal antibody. Treatment with cycloheximide converted the phenotype of resistant cell lines from Fas resistant to Fas sensitive. Moreover, anti-Fas treatment of both resistant and sensitive cell lines induced rapid tyrosine phosphorylation or dephosphorylation of multiple proteins. These results suggest that the apoptotic machinery involved in DNA fragmentation is already in place in Fas-resistant cell lines, and thus, Fas-mediated apoptosis could be a target for therapeutic intervention.
Batch Active Learning via Coordinated Matching (2012)

Most prior work on active learning of classifiers has focused on sequentially selecting one unlabeled example at a time to be labeled in order to reduce the overall labeling effort. In many scenarios, however, it is desirable to label an entire batch of examples at once, for example, when labels can be acquired in parallel. This motivates us to study batch active learning, which iteratively selects batches of $k>1$ examples to be labeled. We propose a novel batch active learning method that leverages the availability of high-quality and efficient sequential active-learning policies by attempting to approximate their behavior when applied for $k$ steps. Specifically, our algorithm first uses Monte-Carlo simulation to estimate the distribution of unlabeled examples selected by a sequential policy over $k$ step executions. The algorithm then attempts to select a set of $k$ examples that best matches this distribution, leading to a combinatorial optimization problem that we term "bounded coordinated matching". While we show this problem is NP-hard in general, we give an efficient greedy solution, which inherits approximation bounds from supermodular minimization theory. Our experimental results on eight benchmark datasets show that the proposed approach is highly effective
Interconnect technology: copper and low-k dielectrics (2003)

Summary form only given, as follows. The interconnect system in ULSI has drawn greater attention nowadays than ever before. This is because the minimization of RC delay of interconnect has to be satisfied in order to achieve high performance of logic device in the GHz era. The major approach to lower RC delay has been directed toward integration of copper and low-k dielectric materials. In this paper, the current status of copper (barrier, seed, and electroplating) and low-k dielectric technologies and their integration issues are discussed.
利用光学克尔介质中的瞬态光栅效应进行飞秒激光脉冲的净化研究 (2011)

We use a transient-grating (TG) process in a Kerr bulk medium to clean a femtosecond laser pulse. Using the technique, the temporal contrast of the generated TG signal is improved by more than two orders of magnitude in comparison with the incident pulse in a 0.5-mm-thick fused silica plate. The laser spectrum is smoothed and broadened, and the pulse duration is shortened simultaneously. We expect to extend this technique to a clean pulse with broadband spectral bandwidth at a wide spectral range because it is a phase-matched process.
Characterization of a novel <i>Neisseria meningitidis</i> Fur and iron‐regulated operon required for protection from oxidative stress: utility of DNA microarray in the assignment of the biological role of hypothetical genes (2004)

We have previously shown that in the human pathogen Neisseria meningitidis group B (MenB) more than 200 genes are regulated in response to growth with iron. Among the Fur-dependent, upregulated genes identified by microarray analysis was a putative operon constituted by three genes, annotated as NMB1436, NMB1437 and NMB1438 and encoding proteins with so far unknown function. The operon was remarkably upregulated in the presence of iron and, on the basis of gel retardation analysis, its regulation was Fur dependent. In this study, we have further characterized the role of iron and Fur in the regulation of the NMB1436-38 operon and we have mapped the promoter and the Fur binding site. We also demonstrate by mutant analysis that the NMB1436-38 operon is required for protection of MenB to hydrogen peroxide-mediated killing. By using both microarray analysis and S1 mapping, we demonstrate that the operon is not regulated by oxidative stress signals. We also show that the deletion of the NMB1436-38 operon results in an impaired capacity of MenB to survive in the blood of mice using an adult mouse model of MenB infection. Finally, we show that the NMB1436-38 deletion mutant exhibits increased susceptibility to the killing activity of polymorphonuclears (PMNs), suggesting that the 'attenuated' phenotype is mediated in part by the increased sensitivity to reactive oxygen species-producing cells. This study represents one of the first examples of the use of DNA microarray to assign a biological role to hypothetical genes in bacteria.
Development and validation of a 36-gene sequencing assay for hereditary cancer risk assessment (2016)

ABSTRACT The past two decades have brought many important advances in our understanding of the hereditary susceptibility to cancer. Numerous studies have provided convincing evidence that identification of germline mutations associated with hereditary cancer syndromes can lead to reductions in morbidity and mortality through targeted risk management options. Additionally, advances in gene sequencing technology now permit the development of multigene hereditary cancer testing panels. Here, we describe the 2016 revision of the Counsyl Inherited Cancer Screen for detecting single-nucleotide variants (SNVs), short insertions and deletions (indels), and copy number variants (CNVs) in 36 genes associated with an elevated risk for breast, ovarian, colorectal, gastric, endometrial, pancreatic, thyroid, prostate, melanoma, and neuroendocrine cancers. To determine test accuracy and reproducibility, we performed a rigorous analytical validation across 341 samples, including 118 cell lines and 223 patient samples. The screen achieved 100% test sensitivity across different mutation types, with high specificity and 100% concordance with conventional Sanger sequencing and multiplex ligation-dependent probe amplification (MLPA). We also demonstrated the screen’s high intra-run and inter-run reproducibility and robust performance on blood and saliva specimens. Furthermore, we showed that pathogenic Alu element insertions can be accurately detected by our test. Overall, the validation in our clinical laboratory demonstrated the analytical performance required for collecting and reporting genetic information related to risk of developing hereditary cancers.
Hollow hemispherical titanium dioxide aggregates fabricated by coaxial electrospray for dye-sensitized solar cell application (2012)

Hollow hemispherical titanium dioxide (TiO2) aggregates (HHTAs) consisting of P25 TiO2 nanocrystallites were prepared by a coaxial electrospray method and applied to dye-sensitized solar cells (DSCs). Although the photoelectrode film constructed with HHTAs possesses an internal surface area lower than that of one with dispersed P25 TiO2 nanocrystallites and thus achieves less dye adsorption, it may generate effective light scattering, which would significantly extend the traveling distance of light within the photoelectrode film and therefore enhance the light-harvesting efficiency, leading to higher power-conversion efficiency (PCE). A bilayer photoelectrode film that consists of HHTAs as the top layer and P25 nanocrystallites as the base layer was also prepared for DSCs. This bilayer structure combines the merits of HHTAs for light scattering and nanocrystallites for sufficient surface area for dye adsorption and, accordingly, results in higher PCE than that of P25 nanocrystallites and HHTAs. Electrochemical impedance spectroscopy revealed that the photoexcited electrons transporting in the HHTA photoelectrode suffer less recombination than that in the P25 nanocrystallite photoelectrode, due mainly to lower specific surface area in the HHTA photoelectrode exposed to electrolyte, which contains oxidized species.
<i>In Vitro</i> Differentiation of Rat Seminiferous Tubular Segments from Defined Stages of the Epithelial Cycle Morphologic and Immunolocalization Analysis (1985)

Rat seminiferous tubule segments have been cultured in chemically defined medium (F12/DMEM 1:1) without added hormones or growth factors. The segments (1-2 mm) were isolated from defined stages of the cycle of the seminiferous epithelium (VIII and XII) by transillumination-assisted microdissection. The precise stages were examined by phase contrast microscopy of live cells squashed carefully out from the adjacent segments between glass slides. The squash technique was also used for a primary screening of the cultured tubules. Pachytene primary spermatocytes from stages VIII to XII of the cycle were able to complete meiotic divisions in vitro. From stage XII, they differentiated up to step 5 spermatids, expressed their specific antigens, and developed characteristic movement patterns of the flagellum and of the chromatoid body. Preleptotene and zygotene spermatocytes from the same cell association differentiated synchronously, as judged by chromosome morphology, characteristic chromosome rotation in zygotene and early pachytene, and by development of specific antigen expression. The elongation phase of spermiogenesis did not proceed normally in vitro. The rate of differentiation was the same as observed earlier in vivo. Earlier studies with [3H]thymidine labeling and autoradiography only permitted follow-up of the development of preleptotene spermatocytes. With the present method, all stages of spermatogenesis can be traced in culture with great accuracy in experiments relating to local regulation of spermatogenesis.