gebhart/patrepeval huggingface dataset:
The Efficient Copper(I) (Hexabenzyl)tren Catalyst and Dendritic Analogues for Green “Click” Reactions between Azides and Alkynes in Organic Solvent and in Water: Positive Dendritic Effects and Monometallic Mechanism (2011)

Abstract An easily synthesized, copper(I) (hexabenzyl)tren complex 1 is an efficient catalyst for the copper(I)‐catalyzed Huisgen‐type 1,3‐cycloaddition between azides and alkynes (CuAAC) reaction in toluene. Alternatively, a convenient procedure involves mixing copper(I) bromide (CuBr) with hexabenzyltren and the substrates in toluene which gives, for instance, 100% yield of triazole in 10 min using 0.1 equiv. catalyst with phenylacetylene and benzyl azide at room temperature. The toluene‐soluble catalyst 1 is recyclable and is applied, for example, to the CuAAC synthesis of an 81‐branched dendrimer that previously required the use of a stoichiometric amount of copper(II) sulfate (CuSO 4 )+sodium ascorbate “catalyst”. Dendritic copper(I)‐centered analogues 2 and 3 of the first and second generations (G1 and G2, respectively) containing respectively 18 and 54 branch termini, including a 54‐branched water‐soluble metallodendrimer 5 , are also very efficient catalysts for the CuAAC reaction. With the metallodendritic Cu(I) derivatives 2 and 3 , the dendritic frame brings about steric protection against the well‐known inner‐sphere aerobic oxidation of Cu(I) to bis(μ‐oxo)‐bis‐Cu(II). The metallodendrimers 2 and 3 are also sometimes more efficient than the parent catalyst, as shown by kinetic studies. Catalysis in water without co‐solvent of the CuAAC reactions of water‐insoluble substrates was achieved under ambient conditions in good yields with the recyclable catalyst 5 . Efficient catalysis of the CuAAC reaction by these bulky Cu(I) metallodendrimers emphasizes the monometallic mechanism. The difference of kinetic behavior between 1 and CuBr+hexabenzyltren suggests, however, that whereas a monometallic mechanism is working for 1 , the mixture of CuBr+hexabenzyltren might involve the bimetallic mechanism proposed by Fokin and Finn.
Striatal dopaminergic markers in dementia with Lewy bodies, Alzheimer's and Parkinson's diseases: rostrocaudal distribution (1999)

Dementia with Lewy bodies (DLB) is a neuropsychiatric disease associated with extrapyramidal features which differ from those of Parkinson's disease, including reduced effectiveness of L-dopa and severe sensitivity reactions to neuroleptic drugs. Distinguishing Alzheimer's disease from DLB is clinically relevant in terms of prognosis and appropriate treatment. Dopaminergic activities have been investigated at coronal levels along the rostrocaudal striatal axis from a post-mortem series of 25 DLB, 14 Parkinson's disease and 17 Alzheimer's disease patients and 20 elderly controls. [(3)H]Mazindol binding to the dopamine uptake site was significantly reduced in the caudal putamen in DLB compared with controls (57%), but not as extensively as in Parkinson's disease (75%), and was unchanged in Alzheimer's disease. Among three dopamine receptors measured (D1, D2 and D3), the most striking changes were apparent in relation to D2. In DLB, [(3)H]raclopride binding to D2 receptors was significantly reduced in the caudal putamen (17%) compared with controls, and was significantly lower than in Parkinson's disease at all levels. D2 binding was significantly elevated at all coronal levels in Parkinson's disease compared with controls, most extensively in the rostral putamen (71%). There was no change from the normal pattern of D2 binding in Alzheimer's disease. The only significant alteration in D1 binding ([(3)H]SCH23390) in the groups examined was an elevation (30%) in the caudal striatum in Parkinson's disease. There were no differences in D3 binding, measured using [(3)H]7-OH-DPAT, in DLB compared with controls. A slight, significant decrease in D3 binding in the caudal striatum of Parkinson's disease (13%) patients and an increase in Alzheimer's disease (20%) in the dorsal striatum at the level of the nucleus accumbens were found. The concentration and distribution of dopamine were disrupted in both DLB and Parkinson's disease, although in the caudate nucleus the loss of dopamine in DLB was uniform whereas in Parkinson's disease the loss was greater caudally. In the caudal putamen, dopamine was reduced by 72% in DLB and by 90% in Parkinson's disease. The homovanillic acid : dopamine ratio, a metabolic index, indicated compensatory increased turnover in Parkinson's disease, which was absent in DLB despite the loss of substantia nigra neurons (49%), dopamine and uptake sites. These differences between DLB, Parkinson's disease and Alzheimer's disease may explain some characteristics of the extrapyramidal features of DLB and its limited response to L-dopa and severe neuroleptic sensitivity. The distinct changes in the rostrocaudal pattern of expression of dopaminergic parameters are relevant to the interpretation of the in vivo imaging and diagnosis of DLB.
Effect of antineoplastic agents on the DNA cleavage/religation reaction of eukaryotic topoisomerase II: inhibition of DNA religation by etoposide (1989)

Beyond its essential physiological functions, topoisomerase II is the primary cellular target for a number of clinically relevant antineoplastic drugs. Although the chemotherapeutic efficacies of these drugs correlate with their abilities to stabilize the covalent topoisomerase II-DNA cleavage complex, their molecular mechanism of action has yet to be described. In order to characterize the drug-induced stabilization of this enzyme-DNA complex, the effect of etoposide on the DNA cleavage/religation reaction of Drosophila melanogaster topoisomerase II was studied. Under the conditions employed, etoposide increased levels of enzyme-mediated double-stranded DNA cleavage 5-6-fold and single-stranded cleavage approximately 4-fold. Maximal stimulation was observed at 80-100 microM etoposide with 50% of the maximal effect at approximately 15 microM drug. By employing a topoisomerase II mediated DNA religation assay [Osheroff, N. & Zechiedrich, E.L. (1987) Biochemistry 26, 4303-4309], etoposide was found to stabilize the enzyme-DNA cleavage complex (at least in part) by inhibiting the enzyme's ability to religate cleaved DNA. Moreover, in order for the drug to affect religation, it has to be present at the time of DNA cleavage.
Core design study of a supercritical light water reactor with double row fuel rods (2012)

An equilibrium core for supercritical light water reactor has been designed. A novel type of fuel assembly with dual rows of fuel rods between water rods is chosen and optimized to get more uniform assembly power distributions. Stainless steel is used for fuel rod cladding and structural material. Honeycomb structure filled with thermal isolation is introduced to reduce the usage of stainless steel and to keep moderator temperature below the pseudo critical temperature. Water flow scheme with ascending coolant flow in inner regions is carried out to achieve high outlet temperature. In order to enhance coolant outlet temperature, the radial power distributions needs to be as flat as possible through operation cycle. Fuel loading pattern and control rod pattern are optimized to flatten power distribution at inner regions. Axial fuel enrichment is divided into three parts to control axial power peak, which affects maximum cladding surface temperature. (authors)
Role of endothelins and nitric oxide in hepatic reperfusion injury in the rat (1998)

We determined the functional role of nitric oxide (NO) and endothelins (ET), two potent vasoactive mediator systems in the liver, for the pathogenesis of sinusoidal perfusion failure and lethal hepatocyte injury after low-flow ischemia/reperfusion in the isolated perfused rat liver. NO synthase blockade with Nomega-nitro-L-arginine methyl ester (L-NAME) (10[-3] mol/L) before reperfusion prevented increased N02-/NO3- the final products of NO oxidation, which could be observed in the vehicle group. Epifluorescence microscopy revealed that the decrease in functional sinusoid density during reperfusion was much more profound compared with vehicle. This was associated with a lower surface PO2, a substantially higher number of nonviable hepatocytes, as assessed by in situ propidium iodide staining, and enhanced enzyme release into the perfusate compared with vehicle. In contrast, reperfusion in the presence of the endothelinA+B receptor antagonist bosentan (2 x 10(-4) mol/L) restored functional sinusoid density and surface PO2 to baseline values, resulted in a small reduction in the number of propidium iodide-positive hepatocytes, and caused similar increases in enzyme release as compared with vehicle. This indicates that hepatic generation of NO attenuates sinusoidal perfusion failure and improves liver tissue oxygenation, thus limiting hepatocyte injury during early reperfusion after hepatic low-flow ischemia. In contrast, endothelins counteract the microcirculatory effects of NO, i.e., mediate the no-reflow in hepatic sinusoids; however, the restoration of functional sinusoid density with bosentan resulted only in a small reduction in tissue damage, suggesting that additional components, which are independent of microcirculatory failure, contribute to hepatic reperfusion injury under these conditions.
Isolation and characterization of the gene encoding the rat α1B adrenergic receptor (1993)

Using a rat alpha 1B adrenergic receptor(AR)-encoding cDNA probe, we isolated two genomic clones from a rat liver genomic DNA library. Southern blot analysis and nucleotide sequencing indicate that the rat alpha 1B AR gene has two exons and a single large intron of at least 16 kb. Analysis of the sequence of the 5'-flanking region suggests that this gene has the features of a housekeeping gene: it has neither a TATA box nor a CAAT box, but has multiple transcription start points (tsp), multiple Sp1-binding sites, and a high G + C content. The 5'-flanking region also contains consensus sequences for AP1- and AP2-binding sites, and putative sites for cyclic AMP (CRE), glucocorticoid (GRE), and thyroid responses (TRE). The 3'-flanking region contains a putative polyadenylation signal (ATTAAA) 492 bp downstream from the stop codon. A comparison of the rat alpha 1B AR sequence with that of the recently cloned human alpha 1B AR gene showed that the overall structure of this gene is highly conserved, with some notable differences in the 5'-flanking region.
Urease-Based Mucosal Immunization against<i>Helicobacter heilmannii</i>Infection Induces Corpus Atrophy in Mice (1999)

Mucosal immunization with Helicobacter heilmannii urease B or Helicobacter pylori urease, given nasally with cholera toxin, protects BALB/c mice against H. heilmannii infection and significantly reduces a preexisting infection. However, immunization aggravates gastric corpus atrophy. Our results underline the necessity of defining immunization regimens that do not enhance mucosal damage.
Adaptive dispersion slope equalizer for dispersion-shifted fibers using a nonlinearly chirped fiber Bragg grating pair (2002)

We realized, for the first time to our knowledge, an adaptive dispersion slope equalizer (ADSE) for dispersion-shifted fibers (DSFs). We demonstrate adaptive equalization using 2 ps pulses of the dispersion changes in an 83 km DSF, induced by temperature changes between -10/spl deg/C and 60/spl deg/C.
Blockade of hepatic nitric oxide synthase causes insulin resistance (1999)

The hypothesis was tested that insulin sensitivity, previously shown to depend on a functional hepatic parasympathetic reflex, was mediated by hepatic production of nitric oxide (NO). Insulin sensitivity was measured using the rapid insulin sensitivity test. N-nitro-L-arginine methyl ester (L-NAME, 2.5 and 5.0 mg/kg iv) and N-monomethyl-L-arginine (L-NMMA, 0.73 mg/kg), nitric oxide synthase (NOS) antagonists, caused insulin resistance in rats. Intraportal administration of L-NAME at a dose of 1.0 mg/kg significantly reduced the response to insulin (54.9 +/- 5.2%); however, administration of the same dose of L-NAME intravenously did not cause a significant decrease in insulin response. Intraportal, but not intravenous, administration of 3-morpholinosydnonimine (SIN-1, 5. 0 mg/kg), a NO donor, partially reversed the insulin resistance caused by L-NMMA. Intraportal administration of SIN-1 (10.0 mg/kg) completely restored insulin sensitivity after L-NMMA or surgical denervation of the liver. Insulin resistance produced by denervation was not further increased by NOS blockade. These results suggest that blockade of NOS causes peripheral insulin resistance secondary to blockade of the hepatic parasympathetic reflex release of hepatic insulin-sensitizing substance in response to insulin.
Synthesis and trypanocidal action of new adamantane substituted imidazolines (2013)

Introduction of the hydrophobic substituents cyclopentyl, cyclohexyl and phenyl into adamantane imidazolines was accomplished with the synthesis of compounds 4. Members of this series were found to display a range of activities against bloodstream forms of Trypanosoma brucei.
Fast, accurate MOS table model for circuit simulation using an unstructured grid and preserving monotonicity (2005)

In this work, we developed a highly memory-efficient, accurate table model that is 10X+ faster than its analytical counterparts: BSIN3/4 models. Speed derives from linear interpolation; accuracy and memory efficiency result from the unstructured grid founded on a BSP tree for discretizing the device function space. We also describe a methodology invoked during table generation to overcome the non-monotonic device behavior that results from interpolating the unstructured grid; the method preserves both continuity and monotonicity of the device quantities. These table models are now implemented in our production circuit simulator, TISpice. Overall speedups of 1.8X to 4.8X were observed on suites of industry circuits.
Translational up‐regulation of Aurora‐A in EGFR‐overexpressed cancer (2009)

Abnormal expression of Aurora-A and epidermal growth factor receptor (EGFR) is observed in different kinds of cancer and associated with poor prognosis in cancer patients. However, the relationship between Aurora-A and EGFR in tumour development was not clear. In previous reports, we found that EGFR translocates to nucleus to activate Aurora-A expression after EGF treatment in EGFR-overexpressed cells. However, we also observed that not all the EGFR-overexpressed cells have the nuclear EGFR pathway to mediate the Aurora-A expression. In this study, we demonstrated that EGF signalling increased the Aurora-A protein expression in EGFR-overexpressed colorectal cancer cell lines via increasing the translational efficiency. In addition, the overexpression of EGFR was also associated with higher expression of Aurora-A in clinical colorectal samples. Activation of the PI3K/Akt/mTOR and MEK/ERK pathways mediated the effect of EGF-induced translational up-regulation. Besides, only the splicing variants containing exon 2 of Aurora-A mRNA showed increased interaction with the translational complex to synthesize Aurora-A protein under EGF stimulus. Besides, the exon 2 containing splicing variants were the major Aurora-A splicing forms expressed in human colorectal cancers. Taken together, our results propose a novel regulatory mechanism for the abnormal expression of Aurora-A in EGFR-overexpressed cancers, and highlight the importance of alternative 5'-UTR splicing variants in regulating Aurora-A expression. Furthermore, the specific expression of exon 2 containing splicing variants in cancer tissues may serve as a potential target for cancer therapy in the future.
Enantioselective analysis of ketamine and its metabolites in equine plasma and urine by CE with multiple isomer sulfated β‐CD (2007)

CE with multiple isomer sulfated beta-CD as the chiral selector was assessed for the simultaneous analysis of the enantiomers of ketamine and metabolites in extracts of equine plasma and urine. Different lots of the commercial chiral selector provided significant changes in enantiomeric ketamine separability, a fact that can be related to the manufacturing variability. A mixture of two lots was found to provide high-resolution separations and interference-free detection of the enantiomers of ketamine, norketamine, dehydronorketamine, and an incompletely identified hydroxylated metabolite of norketamine in liquid/liquid extracts of the two body fluids. Ketamine, norketamine, and dehydronorketamine could be unambiguously identified via HPLC fractionation of urinary extracts and using LC-MS and LC-MS/MS with 1 mmu mass discrimination. The CE assay was used to characterize the stereoselectivity of the compounds' enantiomers in the samples of five ponies anesthetized with isoflurane in oxygen and treated with intravenous continuous infusion of racemic ketamine. The concentrations of the ketamine enantiomers in plasma are equal, whereas the urinary amount of R-ketamine is larger than that of S-ketamine. Plasma and urine contain higher S- than R-norketamine levels and the mean S-/R-enantiomer ratios of dehydronorketamine in plasma and urine are lower than unity and similar.
Essential Fatty Acid Depletion of Renal Allografts and Prevention of Rejection (1988)

A central hypothesis in transplantation biology is that resident leukocytes expressing class II histocompatibility antigens may determine the immunogenicity of an organ. By means of a novel method to deplete the kidney of resident leukocytes, essential fatty acid deficiency (EFAD), this hypothesis was tested in an intact, vascular organ. Kidneys subjected to EFAD and thus depleted of resident Ia-positive macrophages survived and functioned when transplanted across a major histocompatibility antigen barrier in the absence of immunosuppression of the recipient. Control allografts were rejected promptly. Allografts from donors subjected to EFAD normalized their lipid composition and were repopulated with host macrophages by 5 days. Administration of Ia-positive cells at the time of transplantation established that the resident leukocyte depletion induced by EFAD was responsible for the protective effect. These observations may provide insights into the mechanisms underlying tissue immunogenicity and the population of normal tissues with resident leukocytes.
Water‐soluble fullerene derivatives attenuate exsanguination‐induced bronchoconstriction of guinea‐pigs (1997)

1. This study investigated the effects of increased antioxidants (administration of water-soluble fullerenol-1 and pre-exposure to chronic hypoxia) as well as an iron-chelating agent (deferoxamine) on exsanguination-induced noncholinergic airway constriction in guinea-pigs. 2. Fullerenol-1 usually did not cause significant alteration in respiratory function (lung volumes, dynamic respiratory compliance, maximal expiratory flow at 50% total lung capacity (Vmax50), and forced expiratory flow at 0.1 s (FEV 0.1) at low (200 micrograms kg-1) or at high doses (2 mg kg-1), except that it produced a slight bronchial constricting action (decreases in both Vmax 50 and FEV 0.1) at high doses (2 mg kg-1) via intratracheal instillation. 3. Beginning 15 min after exsanguination, there was a marked temporal decrease in FEV 0.1, indicating a gradual increase in airway constriction with time. 4. Administration of either fullerenol-1 or deferoxamine, or pre-exposure to chronic hypoxia significantly ameliorated the exsanguination-induced bronchoconstriction. The results provide evidence that oxygen radicals play an important role in exsanguination-induced airway constriction. 5. The significant effects of the increased antioxidants and deferoxamine,however, cannot be explained by the alteration in either tracheal neutral endopeptidase activity or lung tissue substance P level.
Carotid flow rates and flow division at the bifurcation in healthy volunteers (2004)

In nine healthy subjects, magnetic resonance imaging was used to measure blood flow waveforms in the common (CCA), internal (ICA) and external (ECA) carotid arteries. Useful data were acquired from 14 carotid arteries in total. Flow rates were determined from regions of interest placed over the arteries in CINE-phase contrast velocity encoded images. Use of a normalized cardiac cycle allowed the combination of flow waveforms from individuals. Time-averaged group mean flow rates were 6.16, 4.14 and 1.59 ml s(-1) for the CCA, ICA and ECA, respectively. Time-averaged values for the flow division ratios ICA/CCA, ECA/ICA and ECA/CCA were 0.70, 0.39 and 0.26, respectively. The data will be of use in future physiological studies and in computational modelling of carotid artery haemodynamics.
Optical DNA mapping in nanofluidic devices: principles and applications (2017)

Optical DNA mapping has over the last decade emerged as a very powerful tool for obtaining long range sequence information from single DNA molecules. In optical DNA mapping, intact large single DNA molecules are labeled, stretched out, and imaged using a fluorescence microscope. This means that sequence information ranging over hundreds of kilobasepairs (kbp) can be obtained in one single image. Nanochannels offer homogeneous and efficient stretching of DNA that is crucial to maximize the information that can be obtained from optical DNA maps. In this review, we highlight progress in the field of optical DNA mapping in nanochannels. We discuss the different protocols for sequence specific labeling and divide them into two main categories, enzymatic labeling and affinity-based labeling. Examples are highlighted where optical DNA mapping is used to gain information on length scales that would be inaccessible with traditional techniques. Enzymatic labeling has been commercialized and is mainly used in human genetics and assembly of complex genomes, while the affinity-based methods have primarily been applied in bacteriology, for example for rapid analysis of plasmids encoding antibiotic resistance. Next, we highlight how the design of nanofluidic channels can been altered in order to obtain the desired information and discuss how recent advances in the field make it possible to retrieve information beyond DNA sequence. In the outlook section, we discuss future directions of optical DNA mapping, such as fully integrated devices and portable microscopes.
A universal weak method: summary of results (1983)

The weak methods occur pervasively in Al systems and may form the basic methods for all intelligent systems. The purpose of this paper is to characterize the weak methods and to explain how and why they arise in intelligent systems. We propose an organization, called a universal weak method, that provides functionality of all the weak methods. A universal weak method is an organizational scheme for knowledge that produces the appropriate search behavior given the available task-domain knowledge. We present a problem solving architecture in which we realize a universal weak method. We also demonstrate the universal weak method with a variety of weak methods on a set of tasks.