gebhart/patrepeval huggingface dataset:
Anionic Polymerization of<i>n</i>-Butyl Cyanoacrylate in Emulsion and Miniemulsion (2003)

The manufacture and polymerization of stable n-butyl cyanoacrylate (BCA) miniemulsions were achieved in the presence of dodecylbenzenesulfonic acid (DBSA). This surfactant, by releasing protons at the interface, slows down the interfacial anionic polymerization of n-BCA through (reversible) termination. Preliminary emulsion experiments showed that adequate DBSA/monomer ratios and stirring rates are required to avoid the generation of long polymer chains through uncontrolled polymerization. By sonicating the original mixture to produce a miniemulsion, a fair control of oligomer generation is exerted. In all experiments, however, the final oligomer distribution is mainly composed of three to five units, with the equilibrium value imposed by interfacial polymerization/depolymerization events. As a consequence, particles quickly destabilize by Ostwald ripening of the partly water-soluble hydroxylated oligomers. Decreasing the acid content after sonication by adding hydroxide sodium permits the formation of longer chains and thus enhances particle stability. Maximum molar masses of 1200 g/mol are reached even in the latter polymerization conditions, a critical chain length for which oligomers lose their surface activity and stop propagating.
Anti-nociceptive effect of synthesized di-hydroxy flavones: possible mechanism. (2002)

Renewed interest on the research on the flavonoids is gaining more importance. Earlier literature on flavonoids indicated a significant anti-nociceptive action for flavones and mono-substituted flavones. However, they exhibited a ceiling effect. The present study was undertaken by new synthesizing six disubstituted flavones (DHFs) since poly substituted ones are expected to produce more potent effect. Their anti-nociceptive effect and the role of opioid involvement were studied using acetic acid induced abdominal constriction assay. All the six DHFs administered in elicited a dose related inhibition of abdominal constrictions indicating the presence of the anti-nociceptive response. However, these substances also showed a similar ceiling effect. Like other flavonoid substances, they also utilized opioid pathways. It is suggested that these newly synthesized DHFs can be included along with other flavonoids while attempting clinical trial for analgesic use.
Learning fair predictors with Sensitive Subspace Robustness (2019)

We consider an approach to training machine learning systems that are fair in the sense that their performance is invariant under certain perturbations to the features. For example, the performance of a resume screening system should be invariant under changes to the name of the applicant or switching the gender pronouns. We connect this intuitive notion of algorithmic fairness to individual fairness and study how to certify ML algorithms as algorithmically fair. We also demonstrate the effectiveness of our approach on three machine learning tasks that are susceptible to gender and racial biases.
A search for mycoplasma infections in patients with chronic bronchitis (1971)

Throat and bronchoscopy specimens for mycoplasma isolation studies were collected from 22 patients with chronic bronchitis and 20 patients without chronic bronchitis. Twenty-six of 50 patients attending a chronic bronchitis clinic had throat, nasal, or sputum specimens collected for attempted mycoplasma isolation, and all of these patients had multiple serum samples taken for mycoplasma antibody studies. Mycoplasmas were recovered from throat and bronchoscopy specimens of the chronic bronchitic and non-bronchitic patients with about equal frequency. The concentration of organisms in the bronchoscopy specimens of two patients with chronic bronchitis was greater than in their throat specimens, suggesting downward spread and multiplication of mycoplasmas rather than contamination by passage of the bronchoscope. Eighty-three per cent of the rises in mycoplasma antibody titre in chronic bronchitic patients occurred during or immediately after an acute respiratory illness, and this relationship of rise in antibody titre to acute illness was significantly more frequent than rises in antibody titre not associated with illness. We suggest that mycoplasmas may be present in the bronchi of some patients suffering from chronic bronchitis and that, while such mycoplasma infections are often silent, they may become sufficiently active during infection by other agents to stimulate a mycoplasma antibody response.
Downhole Pneumatic Turbine Motors Testing and Simulation Results (1990)

Summary A new motor was developed for use in air/gas drilling operations. Numerical simulation indicated that such a motor was feasible, and a prototype was built. The prototype underwent extensive bench testing and two successful field tests. The downhole pneumatic turbine drilling motor is expected to prove useful in directional drilling operations in areas where formation damage is a problem.
Identification of <i>Francisella tularensis</i> by Whole-Cell Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry: Fast, Reliable, Robust, and Cost-Effective Differentiation on Species and Subspecies Levels (2010)

Francisella tularensis, the causative agent of tularemia, is a potential agent of bioterrorism. The phenotypic discrimination of closely related, but differently virulent, Francisella tularensis subspecies with phenotyping methods is difficult and time-consuming, often producing ambiguous results. As a fast and simple alternative, matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) was applied to 50 different strains of the genus Francisella to assess its ability to identify and discriminate between strains according to their designated species and subspecies. Reference spectra from five representative strains of Francisella philomiragia, Francisella tularensis subsp. tularensis, Francisella tularensis subsp. holarctica, Francisella tularensis subsp. mediasiatica, and Francisella tularensis subsp. novicida were established and evaluated for their capability to correctly identify Francisella species and subspecies by matching a collection of spectra from 45 blind-coded Francisella strains against a database containing the five reference spectra and 3,287 spectra from other microorganisms. As a reference method for identification of strains from the genus Francisella, 23S rRNA gene sequencing was used. All strains were correctly identified, with both methods showing perfect agreement at the species level as well as at the subspecies level. The identification of Francisella strains by MALDI-TOF MS and subsequent database matching was reproducible using biological replicates, different culture media, different cultivation times, different serial in vitro passages of the same strain, different preparation protocols, and different mass spectrometers.
Synthesis and Permeation Properties of a DDR-Type Zeolite Membrane for Separation of CO<sub>2</sub>/CH<sub>4</sub> Gaseous Mixtures (2007)

Using hydrothermal synthesis, a highly hydrophobic DDR-type zeolite membrane was prepared on the outer surface of a porous α-alumina tube. The results of this study show that it is useful for CO2/CH4 separation. Single-gas permeation for CO2, CH4, H2, He, N2, and O2, and CO2/CH4 binary gas permeation, were measured, respectively, at pressures up to 5 and 2 MPa. The respective single-gas permeances of CO2 and CH4 at 298 K at a feed pressure of 0.2 MPa and a permeate pressure of 0.1 MPa were 4.2 × 10-7 and 1.2 × 10-9 mol m-2 s-1 Pa-1; the ideal selectivity for CO2/CH4 was 340. The permeances were in the following order: CO2 > H2 > He > O2 > N2 > CH4. Single-gas permeance was dependent on the relative molecular size of the DDR pore diameter. However, CO2 permeance dominated the adsorption affinity to the pore wall of DDR zeolite. In mixed-gas permeation experiments using the sweep method, the DDR-type zeolite membrane showed high selectivity for CO2/CH4 mixtures of 200 and high CO2 permeance of 3.0 × 10-7 mol m-2 s-1 Pa-1 at 298 K with a feed pressure of 0.2 MPa. Furthermore, the DDR zeolite membranes were compared to other zeolite membranes for evaluation of their CO2/CH4 selectivity and CO2 permeance; the DDR-type zeolite membranes show better CO2/CH4 separation and CO2 permeance.
Gene structure and expression analysis of the epidermal growth factor receptor, transforming growth factor-alpha,myc, jun, and metallothionein in human ovarian carcinomas classification of malignant phenotypes (1993)

This study reports the structure and expression rates of genes of the transforming growth factor-alpha (TGF-alpha) signal transduction pathway (TGF-alpha, epidermal growth factor receptor [EGF-R], jun, myc, and metallothionein [MT]) in 47 specimens of ovarian cancer and 21 nonmalignant tissues. The objective was to establish a direct correlation between the genetic activities and the malignant phenotype of the ovarian cancer. The Southern blot technique identified four samples with myc amplification and two with rearranged EGF-R genes. By using the S1 nuclease assay, the analysis of myc transcription showed a similar use of both promotors. Although the size of the investigated transcripts was unaltered, significant differences in the transcription rates were noticed in malignant tissue probes (using northern blot analysis and RNAase protection assay). The following results of messenger RNA analysis in ovarian cancer were observed: EGF-R, negative in 25%, low in 65%, and strongly positive in 10%; TGF-alpha, negative in 34%, low in 36%, and strongly positive in 30%; myc, negative in 8%, low in 64%, and strongly positive in 28%; jun, negative in 4%, low in 58%, and strong in 38%; and MT, low in 80% and strongly positive in 20%. In most nonmalignant tissues studied, no or only a low expression of TGF-alpha, EGF-R, and myc. was found. A comparison of these messenger RNA results with the clinical data from tumors showed four different subgroups of ovarian carcinomas. The results of chemotherapy were known in 32 cases. Tumors with negative or low expression rates of all investigated genes did not respond to chemotherapy; 13 of 18 tumors with high expression rates did respond. Additional signal transduction chains distinct from the TGF-alpha pathway, however, are likely to influence both the expression and activity of transcription factors and MT.
Efficient Markov Network Structure Discovery using Independence Tests (2006)

We present two algorithms for learning the structure of a Markov network from data: GSMN* and GSIMN. Both algorithms use statistical independence tests to infer the structure by successively constraining the set of structures consistent with the results of these tests. Until very recently, algorithms for structure learning were based on maximum likelihood estimation, which has been proved to be NP-hard for Markov networks due to the difficulty of estimating the parameters of the network, needed for the computation of the data likelihood. The independence-based approach does not require the computation of the likelihood, and thus both GSMN* and GSIMN can compute the structure efficiently (as shown in our experiments). GSMN* is an adaptation of the Grow-Shrink algorithm of Margaritis and Thrun for learning the structure of Bayesian networks. GSIMN extends GSMN* by additionally exploiting Pearl's well-known properties of the conditional independence relation to infer novel independences from known ones, thus avoiding the performance of statistical tests to estimate them. To accomplish this efficiently GSIMN uses the Triangle theorem, also introduced in this work, which is a simplified version of the set of Markov axioms. Experimental comparisons on artificial and real-world data sets show GSIMN can yield significant savings with respect to GSMN*, while generating a Markov network with comparable or in some cases improved quality. We also compare GSIMN to a forward-chaining implementation, called GSIMN-FCH, that produces all possible conditional independences resulting from repeatedly applying Pearl's theorems on the known conditional independence tests. The results of this comparison show that GSIMN, by the sole use of the Triangle theorem, is nearly optimal in terms of the set of independences tests that it infers.
Fano Resonances in Nanoscale Plasmonic Systems: A Parameter-Free Modeling Approach (2011)

The interaction between plasmonic resonances, sharp modes, and light in nanoscale plasmonic systems often leads to Fano interference effects. This occurs because the plasmonic excitations are usually spectrally broad and the characteristic narrow asymmetric Fano line-shape results upon interaction with spectrally sharper modes. By considering the plasmonic resonance in the Fano model, as opposed to previous flat continuum approaches, here we show that a simple and exact expression for the line-shape can be found. This allows the role of the width and energy of the plasmonic resonance to be properly understood. As examples, we show how Fano resonances measured on an array of gold nanoantennas covered with PMMA, as well as the hybridization of dark with bright plasmons in nanocavities, are well reproduced with a simple exact formula and without any fitting parameters.
NAPRALERT: computer handling of natural product research data (1985)

Research in natural products, not unlike many other fields of investigation, requires access to large amounts of prior experimental data relevant to specific projects. The most efficient method of identifying and analyzing these data currently employs computer handling of the information. The NAPRALERT database has been designed to meet this need relevant to the development of natural products. It has also been designed, through analysis of existing literature and its contained data, to provide a means to predictively identify taxonomic sources most promising from specific biological activities.
Toxoflavin Produced by <i>Burkholderia glumae</i> Causing Rice Grain Rot Is Responsible for Inducing Bacterial Wilt in Many Field Crops (2003)

Severe wilt symptoms similar to bacterial wilt caused by Ralstonia solanacearum were observed in tomato, hot pepper, eggplant, potato, perilla, sesame, and sunflower in 2000 and 2001 in Korea. From diseased crops at 65 different locations, we obtained 106 isolates that produced green pigment on CPG medium; 36 were isolated from discolored rice panicles. The causal pathogen was identified as Burkholderia glumae based on its biochemical characteristics, fatty acid methyl ester analysis, and 16S rRNA gene sequence. Nine representative isolates produced toxoflavin, as determined by electrospray ionization mass spectrometry using a direct inlet system and TLC analyses, and caused bacterial wilt on tomato, sesame, perilla, eggplant, and hot pepper. However, BGR12, a wild-type isolate lacking toxoflavin production and toxoflavin-deficient mutants generated by Tn5lacZ failed to cause bacterial wilt on those five field crops. Cells of B. glumae and synthetic toxoflavin caused wilt symptoms on field crops, demonstrating a lack of host specificity. Synthetic toxoflavin caused wilt symptoms on tomato, sesame, perilla, eggplant, and hot pepper at 10 μg/ml concentration 1 day after treatment. This is the first report of bacterial wilt on various crops caused by B. glumae, and our results clearly demonstrate that toxoflavin is a key factor in wilt symptom development.
A "Green" Route to Adipic Acid: Direct Oxidation of Cyclohexenes with 30 Percent Hydrogen Peroxide (1998)

Currently, the industrial production of adipic acid uses nitric acid oxidation of cyclohexanol or a cyclohexanol/cyclohexanone mixture. The nitrous oxide emission from this process measurably contributes to global warming and ozone depletion. Therefore, the development of an adipic acid production process that is less damaging to the environment is an important subject in chemical research. Cyclohexene can now be oxidized directly to colorless crystalline adipic acid with aqueous 30 percent hydrogen peroxide under organic solvent- and halide-free conditions, which could provide an ideal solution to this serious problem.
[Mechanism of action of retinoids in a new therapeutic approach to acute promyelocytic leukemia]. (1992)

Vitamin A (retinol) and retinoic acid, its natural derivative, play an important role in the growth, differentiation and development of known normal tissues. Retinoids have recently become of interest to research in areas as diverse as dermatology, embryonal development and cancer research. Retinol is the major retinoid transported in the blood and tissues by its specific carrier retinol binding protein (RBP). The normal level of retinol in plasma is regulated very precisely by retinol homeostasis. RBP-retinol circulation supplies target cells, which then activate retinol into retinoic acid (RA) if they possess the NAD-dependent enzymatic oxidation system. RA, which is one of the most active metabolites of retinol, is also present in low concentration in the blood and the RA rate formation varies from tissues depending on specific need of the cell. The cellular transport and biological activity of retinoids may be mediated by their specific cytoplasmic binding proteins cellular retinol binding protein (CRBP) and the cellular retinoic acid binding protein (CRABP) which may function as shuttles targetting RA to nucleosol fraction and/or as regulator of cellular concentration of RA. The nuclear proteins RARs (retinoic acid receptors), which are members of the nuclear receptor superfamily are likely to be the final transducers of the RA signal at the gene expression. All-trans retinoic acid (ATRA) is able to specifically differentiate the malignant cells from leukemic patients with APL in short-term culture. For this reason, APL patients were successfully treated with ATRA (Chinese and French results). Acute promyelocytic leukemia M3 (French-American-British FAB classification) is a rare disease (10% of AML), characterized by a reciprocal chromosome 15-17 translocation. It has been shown that the chromosome 17 breakpoint of the translocation is localized within the RAR alpha gene. Due to the t(15;17) RAR alpha gene translocated to a gene PML on chromosome 15 resulting in synthesis of PML/RAR alpha fusion messenger RNA. Detection of PML/RAR alpha transcript is now a molecular marker of the disease. The abnormal PML/RAR alpha protein exhibits altered transcription activation properties when compared with RAR alpha. Clinical trials have demonstrated that ATRA is extremely efficient in inducing complete remission in APL patients. The morphologic finding of maturing elements in the bone marrow and peripheral blood during retinoic acid treatment indicates that the remission is obtained without hypoplasia and suggests that a differentiating mechanism is involved.(ABSTRACT TRUNCATED AT 400 WORDS)
Structure–function analysis of the C-3 position in analogues of microbial behavioural modulators HHQ and PQS (2012)

2-Heptyl-3-hydroxy-4-quinolone (PQS) and its precursor 2-heptyl-4-quinolone (HHQ) are key signalling molecules of the important nosocomial pathogen Pseudomonas aeruginosa. We have recently reported an interkingdom dimension to these molecules, influencing key virulence traits in a broad spectrum of microbial species and in the human pathogenic yeast Candida albicans. For the first time, targeted chemical derivatisation of the C-3 position was undertaken to investigate the structural and molecular properties underpinning the biological activity of these compounds in P. aeruginosa, and using Bacillus subtilis as a suitable model system for investigating modulation of interspecies behaviour.
Requirement for the Alternative Pathway as Well as C4 and C2 in Complement-Dependent Hemolysis Via the Lectin Pathway (1998)

Mannan-binding lectin (MBL) is a C1q-like molecule opsonic for several micro-organisms. MBL can activate C4, C2, and later acting complement components in the presence of serine proteases similar to but distinct from C1r and C1s via the lectin pathway of complement activation. We report here that mannan-coated MBL-sensitized erythrocytes are lysed via the lectin pathway in human serum-Mg-EGTA. The surprising occurrence of MBL-initiated lysis in the absence of calcium contrasts with the calcium requirement for C1q-initiated activation of C4 and C2. C2 is required, and lysis is significantly enhanced when indicator cells presensitized with C4 and then coated with mannan (EAC4-M) are used. The alternative pathway also is required, since lysis is lost when either factor D or factor B is removed and is restored upon reconstitution with the purified protein. Even though MBL is a C-type lectin, it is retained on mannan-coated erythrocytes in the absence of calcium. This contrasts with the absence of calcium-independent retention on mannan immobilized on polystyrene plates or beads, and helps explain the MBL-initiated hemolysis in Mg-EGTA. These investigations show that the alternative pathway as well as C4 and C2 of the classical pathway are required for complement-dependent hemolysis via the lectin pathway and provide a method for assay of lectin pathway-mediated complement activity in human serum that should be useful in unraveling the molecular interactions of this pathway.
Inclined slot array antennas on a rectangular coaxial line (2010)

Slotted-waveguide array antennas are attractive because of their low-loss characteristics in high frequencies. Several types of slotted arrays whose polarization angles are inclined to the waveguide axis have been reported [1]–[8]. In this paper, we propose a new type of slot array antennas on a rectangular coaxial line for minimizing the waveguide width. As opposed to a conventional waveguide, there is no “cut-off” concept in the present case because the coaxial line is a TEM-line. Therefore it is possible to guide the wave even if the diameter of the line is much smaller than that of the waveguide. Moreover, this antenna is a resonant slot array antenna that is based on standing-wave excitation and is thus different from a travelling-wave antenna (such as a leaky coaxial cable (LCX)).
Shallow n+ Junctions in Silicon by Arsenic Gas‐Phase Doping (1994)

Shallow arsenic junctions were formed in short processing times using gas‐phase rapid thermal diffusion with arsine or tertiarybutylarsine (TBA). A 60 s gas‐phase diffusion at 1100°C using 3.6% arsine in helium at 760 Torr formed 150 nm junctions with a measured sheet resistance of 100 Ω/□. Shallow junctions were also formed with a 12 min diffusion at 900°C using 10% TBA in argon at 10 Torr. These TBA‐formed junctions have arsenic concentration at the silicon surface greater than and a sheet resistance of 244 Ω/□. In addition, TEM cross sections show no process‐induced damage at the junction for gas‐phase doping.
Linkage Disequilibrium: Ancient History Drives the New Genetics (2005)

This brief review provides a summary of the biological causes of genetic association between tightly linked markers--termed linkage disequilibrium--and unlinked markers--termed population structure. We also review the utility of linkage disequilibrium data in gene mapping in isolated populations, in the estimation of recombination rates and in studying the history of particular alleles, including the detection of natural selection. We discuss current understanding of the extent and patterns of linkage disequilibrium in the genome, and its promise for genetic association studies in complex disease. Finally, we highlight the importance of using appropriate statistical procedures, such as the false discovery rate, to maximize the chances of success in large scale association studies.