gebhart/patrepeval huggingface dataset:
Dynamic real-time imaging of living cell traction force by piezo-phototronic light nano-antenna array (2021)

Dynamic mapping of the cell-generated force of cardiomyocytes will help provide an intrinsic understanding of the heart. However, a real-time, dynamic, and high-resolution mapping of the force distribution across a single living cell remains a challenge. Here, we established a force mapping method based on a "light nano-antenna" array with the use of piezo-phototronic effect. A spatial resolution of 800 nm and a temporal resolution of 333 ms have been demonstrated for force mapping. The dynamic mapping of cell force of live cardiomyocytes was directly derived by locating the antennas' positions and quantifying the light intensities of the piezo-phototronic light nano-antenna array. This study presents a rapid and ultrahigh-resolution methodology for the fundamental study of cardiomyocyte behavior at the cell or subcellular level. It can provide valuable information about disease detection, drug screening, and tissue engineering for heart-related studies.
A frequency domain method for parametrization of the voice source (2002)

A new frequency domain method for the quantification of glottal volume velocity waveforms is presented. This technique, called Parabolic Spectral Parameter (PSP), is based on fitting a parabolic function to a pitch synchronously computed spectrum of the estimated voice source. The PSP algorithm gives a single numerical value that describes how the spectral decay of an obtained glottal flow behaves with respect to theoretical bounds corresponding to maximal and minimal spectral tilting.
Characterization and cloning of the African horsesickness virus genome (1990)

The dsRNA profiles of all nine African horsesickness virus (AHSV) serotypes were compared by agarose gel electrophoresis and PAGE. The agarose profiles were identical, but a unique profile was obtained for each of the nine serotypes by PAGE. Nine of the 10 dsRNA genome segments of AHSV-3 were cloned and the clones were used in dot-spot and Northern blot hybridization experiments to determine intra- and inter-serogroup nucleic acid similarities. Segments 1, 3, 4, 5, 7 and 8 were highly conserved in the AHSV serogroup and no genetic relationship with any of the other orbiviruses was observed. Of these segments 3, 5 and 8 showed the largest degree of cross-hybridization to the cognate genes of all the serotypes. These clones did not cross-hybridize to other orbiviruses such as epizootic haemorrhagic disease virus, bluetongue virus or equine encephalosis virus and are therefore recommended for use as group-specific probes for the identification of the AHSV serogroup. Genome segments 6 and 10 showed an intermediate degree of conservation, whereas segment 2 is serotype-specific and therefore probably codes for the outer capsid protein VP2.
Correlation of Endostatin and Tissue Inhibitor of Metalloproteinases 2 (TIMP2) Serum Levels With Cardiovascular Involvement in Systemic Sclerosis Patients (2005)

Fibrosis of oesophagus, lungs, heart, and kidney in the course of systemic sclerosis (SSc) may lead to dysfunction of the above organs or even patients death. Recent studies point out the role of angiogenesis and fibrosis disturbances in the pathogenesis of SSc. Heart fibrosis is one of the most important prognostic factors in SSc patients. So, the aim of our study was to examine cardiovascular dysfunction in SSc patients and its correlation with serum levels of vascular endothelial growth factor (VEGF), endostatin, and tissue inhibitor of metalloproteinase 2 (TIMP2). The study group comprised 34 patients (19 with limited scleroderma (lSSc) and 15 with diffuse scleroderma (dSSc)). The control group consisted of 20 healthy persons, age and sex matched. Internal organ involvement was assessed on the basis of specialist procedures. Serum VEGF, endostatin, and TIMP2 levels were evaluated by ELISA. We found cardiovascular changes in 15 patients with SSc (8 with lSSc and 7 with dSSc). The observed symptoms were of different characters and also coexisted with each other. Higher endostatin serum levels in all systemic sclerosis patients in comparison to the control group were demonstrated (P < .05). Also higher serum levels of endostatin and TIMP2 were observed in patients with cardiovascular changes in comparison to the patients without such changes (P < .05). The obtained results support the notion that angiogenesis and fibrosis disturbances may play an important role in SSc. Evaluation of endostatin and TIMP2 serum levels seems to be one of the noninvasive, helpful examinations of heart involvement in the course of systemic sclerosis.
Arrowhead-Shaped Microelectrodes Fabricated on a Flexible Substrate for Enhancing the Spherical Conformity of Retinal Prostheses (2010)

In this paper, a novel microelectrode array (MEA), with varying arrowhead shapes, is fabricated and evaluated for retinal prostheses. The proposed MEA has a total of 199 arrowhead-shaped microelectrodes, with heights ranging from 42 to 123.5 μm. This height variation allows each microelectrode to contact the spherical eyeball conformably and to approach the stimulation target retinal cells very closely. The fabricated MEAs are implanted in rabbit eyes. The physical contact of the MEA is evaluated using optical coherent tomography (OCT) images, which show that the implanted MEA makes an excellent conformal contact with the spherically shaped retinal layers. These OCT images also exhibit good biocompatibility of the implanted MEA. The evaluation results show that the proposed MEA has a high potential for clinical applications. Our ongoing project is aimed at clinical application in three years. [2010-0037].
X‐ray crystallographic analysis of adipocyte fatty acid binding protein (aP2) modified with 4‐hydroxy‐2‐nonenal (2010)

Fatty acid binding proteins (FABP) have been characterized as facilitating the intracellular solubilization and transport of long-chain fatty acyl carboxylates via noncovalent interactions. More recent work has shown that the adipocyte FABP is also covalently modified in vivo on Cys117 with 4-hydroxy-2-nonenal (4-HNE), a bioactive aldehyde linked to oxidative stress and inflammation. To evaluate 4-HNE binding and modification, the crystal structures of adipocyte FABP covalently and noncovalently bound to 4-HNE have been solved to 1.9 A and 2.3 A resolution, respectively. While the 4-HNE in the noncovalently modified protein is coordinated similarly to a carboxylate of a fatty acid, the covalent form show a novel coordination through a water molecule at the polar end of the lipid. Other defining features between the two structures with 4-HNE and previously solved structures of the protein include a peptide flip between residues Ala36 and Lys37 and the rotation of the side chain of Phe57 into its closed conformation. Representing the first structure of an endogenous target protein covalently modified by 4-HNE, these results define a new class of in vivo ligands for FABPs and extend their physiological substrates to include bioactive aldehydes.
Synthesis and antimicrobial activities of gold(I) sulfanylcarboxylates (2012)

Reaction of NaAuCl4·H2O and thiodiglycol (1:3 molar ratio) with 3-(aryl)-2-sulfanylpropenoic acids, H2 xspa = [x:p = 3-phenyl-, f = 3-(2-furyl)-, t = 3-(2-thienyl)-, o-py = 3-(2-pyridyl)-, Clp = 3-(2-chlorophenyl)-, -o-mp = 3-(2-methoxyphenyl)-, -p-mp = 3-(4-methoxyphenyl)-, -o-hp = 3-(2-hydroxyphenyl)-, -p-hp = 3-(4-hydroxyphenyl)-, diBr-o-hp = 3-(3,5-dibromo-2-hydroxyphenyl)] and 2-cyclopentylidene-2-sulfanylacetic acid (H2cpa) in a 1:1 metal/ligand molar ratio gave compounds of the type [Au(Hxspa)] or [Au(Hcpa)]. These compounds were reacted with diisopropylamine to afford [HQ][Au(xspa)] or [HQ][Au(cpa)] (HQ = diisopropylammonium) and with NaOH to afford Na[Au(xspa)]·H2O and Na[Au(cpa)]·H2O. All of the new compounds were isolated and characterised by IR and 1H and 13C NMR spectroscopy. The antimicrobial activities of the complexes against Escherichia coli, Staphylococcus aureus, Bacillus subtilis, Candida albicans, Pseudomonas aeruginosa and carbapenem-resistant P. aeruginosa were evaluated and compared to those of the equivalent silver(I) complexes. The comparison shows that the gold compounds generally show better activity than the silver analogues against S. aureus and B. subtilis, but low sensitivity against E. coli, P. aeruginosa and C. albicans, suggesting a different mode of antimicrobial action for equivalent silver and gold compounds.
Privacy preserving mapping schemes supporting comparison (2010)

To cater to the privacy requirements in cloud computing, we introduce a new primitive, namely Privacy Preserving Mapping (PPM) schemes supporting comparison. An PPM scheme enables a user to map data items into images in such a way that, with a set of images, any entity can determine the <, =, > relationships among the corresponding data items. We propose three privacy notions, namely ideal privacy, level-1 privacy, and level-2 privacy, and three constructions satisfying these privacy notions respectively.
Color quantization of images (1991)

The authors develop algorithms for the design of hierarchical tree structured color palettes incorporating performance criteria which reflect subjective evaluations of image quality. Tree structured color palettes greatly reduce the computational requirements of the palette design and pixel mapping tasks, while allowing colors to be properly allocated to densely populated areas of the color space. The algorithms produce higher-quality displayed images and require fewer computations than previously proposed methods. Error diffusion techniques are commonly used for displaying images which have been quantized to very few levels. Problems related to the application of error diffusion techniques to the display of color images are discussed. A modified error diffusion technique is shown to be easily implemented using the tree structured color palettes developed earlier.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Nonfasting Plasma Glucose is a Better Marker of Diabetic Control Than Fasting Plasma Glucose in Type 2 Diabetes (1997)

In type 2 diabetes, postlunch PG and extended postlunch PG are better predictors of glycemic control than fasting plasma glucose (FPG). We therefore suggest that they be more widely used to supplement, or substitute for, FPG in evaluating the metabolic control of type 2 diabetic patients.
High gain, dual frequency, dual polarization, low profile antenna design for millimetre-wave communication systems (1997)

A design is given for a low profile, high gain antenna which transmits and receives at two different frequencies at two perpendicular polarizations. The antenna is composed of two arrays of traveling-wave slots positioned normal to one another and fed by a parallel-plate waveguide structure. The look angle of each array is determined by the ratio of the phase coefficients of the waveguide to that in air, /spl beta//sub g///spl beta//sub o/. In order to obtain the same look angle for both the transmit and receive beams, the parallel-plate waveguide is partially loaded with a dielectric to achieve the appropriate /spl beta//sub g///spl beta//sub o/ ratios. The parallel-plate waveguide is fed by two horn-lens structures from opposite ends, folded beneath the radiating structure via two 180/spl deg/ bends. The calculated radiation patterns, beamwidths, squint angles, and mechanical tolerances are given for a typical Ka-band satellite terminal antenna design.
Aspartic protease inhibitors (2000)

Aspartic proteases play key roles in a variety of pathologies, including acquired immunodeficiency syndrome. Peptidomimetic inhibitors can act as drugs to combat these pathologies. We have developed an integrated methodology for preparing human immunodeficiency virus (HIV)-1 aspartic protease diaminodiol inhibitors, based on a computational method that predicts the potential inhibitory activity of the designed structures in terms of calculated enzyme-inhibitor complexation energies. This is combined with a versatile synthetic strategy that couples a high degree of stereochemical control in the central diaminodiol module with complete flexibility in the choice of side chains in the core and in flanking residues. A series of 23 tetrameric, pentameric and hexameric inhibitors, with a wide range of calculated relative complexation energies (-47.2 to +117 kJ.mol-1) and predicted hydrophobicities (logPo/w = 1.8-8.4) was thus assembled from readily available amino acids and carboxylic acids. The IC50 values for these compounds ranged from 3.2 nM to 90 microM, allowing study of correlations between structure and activity, and individuation of factors other than calculated complexation energies that determine the inhibition potency. Multivariable regression analysis revealed the importance of side-chain bulkiness and rigidity at the P2, P2' positions, suggesting possible improvements for the prediction process used to select candidate structures.
N,N'-disubstituted guanidine high-potency sweeteners (1992)

The role and function of the aryl group in the highly potent trisubstituted guanidine sweeteners 7a-d was investigated. Four disubstituted guanidines, lacking the aryl group, were prepared. These guanidines contain a hydrophobic substituent on one nitrogen and a carboxymethyl group substituted on one of the other nitrogens. They were found to be tasteless or to have a significantly lower sweetness potency than the corresponding trisubstituted compounds. Possible rationales for the effects of structure on the sweet taste activity are discussed.
Synthesis and preliminary cytotoxic activity of dimethoxy‐acridines and dimethoxynitroacridines (1994)

Abstract The preparation of a series of dimethoxy and dimethoxynitroacridines and their activity in oxic and hypoxic cells is reported. Anthranilic acids 1,4,14 were prepared according to the Ullmann condensation. 9‐chloroacridines were obtained from anthranilic acids by refluxing in phosphorus oxychloride. The synthesis of two new acridine dimers 9,10 is described. Nitration of 9‐chloro‐2,4‐dimethoxyacridine 15 gave 3‐nitro isomer 19 . By phenol‐mediated coupling reaction from all the 9‐chloroacridines, the respective 9‐(alkylamino)acridines were obtained. By nitration of 17 a new 2,4‐dimethoxy‐3,7‐dinitroacridine 21 was prepared
Triterpenoids from Roots of Glycine max (L.) Merr (2006)

Metanolic root extract of Glycine max (L.) Merr. was chromatographed, affording three triterpenoids 1-3. The compound 3 was isolated from microorganism called Fusarium sporotrichioides but never been isolated from any plant sources. Compounds 1-3 showed cytotoxic activity against HT-59 human cancer cell line with values of 62.9, 20.0, and , respectively. Compound 3 showed significant activities against Gram-positive bacterial such as Bacillus cereus, Bacillus subtilis, and Staphylococcs aureus.
Efficient engraftment of human primary breast cancer transplants in nonconditioned NOD/Scid mice (2003)

We describe a new human tumor xenotransplant animal model that is highly efficient for engraftment, does not need host conditioning and is suitable for in vivo studies of human tumors. Pieces of 61 freshly operated primary breast tumors were implanted into 172 irradiated and 228 nonconditioned NOD/Scid mice. A high mortality was observed in irradiated but not in nonconditioned recipients. More than 90% of analyzed implanted breast cancer specimens engrafted in the NOD/Scid mice irrespective of pretreatment. The tumors were vascularized within 3 days of implantation and maintained original histomorphology as well as expression patterns of tumor markers (cytokeratin and MUC1) and cytokines (tumor necrosis factor alpha (TNF-alpha), interleukin-4 (IL-4) and IL-10) released by adjacent stromal cells. A majority of tumors grew slowly, locally infiltrating host tissue, whereas some grew aggressively, developing large, fatal tumor masses and metastases within regional lymph nodes. Tumor progression in mice correlated with stage, grade, proliferation index and hormone receptor status of primary tumors. The reproducible growth behavior and preservation of characteristic features suggest that this new xenotransplant model is relevant and can be recommended for testing new anticancer therapies.
Protein-ubiquinone interaction in bovine heart mitochondrial succinate-cytochrome c reductase. Synthesis and biological properties of fluorine substituted ubiquinone derivatives. (1991)

To investigate the protein-ubiquinone interaction in the bovine heart mitochondrial succinate-cytochrome c reductase region of the respiratory chain, three fluorine substituted ubiquinone derivatives, 2,3-dimethoxy-6-(9'-fluorodecyl)-1,4-benzoquinone (9FQ), 2-methoxy-5-trifluoromethyl-6-decyl-1,4-benzoquinone (TFQ), and 2-methoxy-5-trifluoromethyl-6-(9'-fluorodecyl)-1,4-benzoquinone (9FTFQ), were synthesized. 9FQ was synthesized by radical coupling of Q0 and bis(10-fluoroundecanoyl)peroxide. The latter was prepared by fluorination of undecylenic acid followed by thionylchloride treatment and peroxidation. TFQ was synthesized from 2,2,2-trifluoro-p-cresol by methylation, nitration, reduction, acetylation, nitration, reduction, oxidation, and radical alkylation. 9FTFQ was prepared by the radical alkylation of 2-methoxy-5-trifluoromethyl-1,4-benzoquinone with bis(10-fluoroundecanoyl)peroxide. All three fluoro-Q derivatives are active (greater than 50% the activity of 2,3-dimethoxy-5-methyl-6-decyl-1,4-benzoquinone) when used as electron acceptors for succinate-ubiquinone reductase. However, only 9FQ is active when used as an electron donor for ubiquinol-cytochrome c reductase or as an electron mediator for succinate-cytochrome c reductase. Both TFQ and 9FTFQ are competitive inhibitors for ubiquinol-cytochrome c reductase. A 19FNMR peak-broadening effect was observed for 9FQ when it was reconstituted with ubiquinone-depleted ubiquinol-cytochrome c reductase. A drastic up-field chemical shift was observed for TFQ when it was reconstituted with ubiquinone-depleted reductase. These results indicate that the binding environments of the benzoquinone ring and the alkyl side chain of the Q molecule are different. The strong up-field chemical shift for TFQ, and lack of significant chemical shift for 9FQ, suggest that the benzoquinone ring is bound near the paramagnetic cytochrome b heme.
A robust adaptive stochastic gradient method for deep learning (2017)

Stochastic gradient algorithms are the main focus of large-scale optimization problems and led to important successes in the recent advancement of the deep learning algorithms. The convergence of SGD depends on the careful choice of learning rate and the amount of the noise in stochastic estimates of the gradients. In this paper, we propose an adaptive learning rate algorithm, which utilizes stochastic curvature information of the loss function for automatically tuning the learning rates. The information about the element-wise curvature of the loss function is estimated from the local statistics of the stochastic first order gradients. We further propose a new variance reduction technique to speed up the convergence. In our experiments with deep neural networks, we obtained better performance compared to the popular stochastic gradient algorithms.
Two-way shape memory effect induced by repetitive compressive loading cycles (2009)

The NiTi alloy can be trained by repetitive loading or heating cycles. As a result of the training, a two-way shape memory effect (TWSME) can be induced. Considerable research has been reported regarding the TWSME trained by tensile loading. However, the TWSME trained by compressive loading has not been investigated nearly as much. In this paper, the TWSME is induced by compressive loading cycles and the two-way shape memory strain is evaluated by using two types of specimen: a solid cylinder type and a tube type. The TWSME trained by compressive loading is different from that trained by tensile loading owing to the severe tension/compression asymmetry as described in previous research. After repetitive compressive loading cycles, strain variation upon cooling is observed, and this result proves that the TWSME is induced by compressive loading cycles. By performing compressive loading cycles, plastic deformation in NiTi alloy occurs more than for tensile loading cycles, which brings about the appearance of TWSME. It can be said that the TWSME is induced by compressive loading cycles more easily. The two-way shape memory strain increases linearly as the maximum strain of compressive loading cycles increases, regardless of the shape and the size of the NiTi alloy; this two-way shape memory strain then shows a tendency towards saturation after some repeated cycles.
Firewall Policy Diagram: Structures for Firewall Behavior Comprehension (2015)

Communication security and regulatory compliance have made the firewall a vital element for networked computers. They provide the protections between parties that only wish to communicate over an explicit set of channels, expressed through protocols, traveling over a network. These explicit set of channels are described and implemented in a firewall using a set of rules. The firewall implements the will of the organization through an ordered list of these rules, collectively referred to as a policy. In small test environments and networks, firewall policies may be easy to comprehend and understand; however, in real world organizations these devices and policies must be capable of handling large amounts of traffic traversing hundreds or thousands of rules in a particular policy. Added to that complexity is the tendency of a policy to grow substantially more complex over time and the result is often unintended mistakes in comprehending what is allowed, possibly leading to security breaches. Therefore, it is imperative that an organization is able to unerringly and deterministically reason about network traffic, while being presented with hundreds or thousands of rules. This work seeks to address this problem using a data structure, the Firewall Policy Diagram, in an effort to advance the state of large network behavior comprehension.
Dependence of in vitro Demineralization of Apatite and Remineralization of Dental Enamel on Fluoride Concentration (1990)

The anti-caries activity of fluoride is contributed to in several ways. Two major aspects of fluoride action are (i) the inhibition of demineralization at the crystal surfaces within the tooth, and (ii) the enhancement of subsurface remineralization resulting in arrestment or reversal of caries lesions. Fluoride present in the aqueous phase at the apatite crystal surface may play a determining role in the inhibition of enamel or dentin demineralization. In one part of the present study, the initial dissolution rate of synthetic carbonated-apatite in acetate buffers was measured with fluoride present in the buffer in the 0-2.6 mmol/L (0-50 ppm) range. Inhibition of demineralization was shown to be a logarithmic function of the fluoride concentration in solution. In the second part of the present study, an in vitro pH-cycling model was used for determination of the effect on net de/remineralization of enamel by treatment solutions containing fluoride in the 0-26 mmol/L (0-500 ppm) range. The net mineral loss was shown to be negatively related to the logarithm of the fluoride concentration. These studies have demonstrated an exponential quantitative relationship between fluoride concentration and inhibition of apatite demineralization or enhancement of remineralization. The clinical implications are (i) that simply increasing fluoride concentration may not necessarily give increased cariostatic benefit, and (ii) that improving the means of delivery of relatively low fluoride concentrations for longer times should be more appropriate for enhancing clinical efficacy.