gebhart/patrepeval huggingface dataset:
Intraluminal Airway Inflammation in Chronic Bronchitis: Characterization and Correlation with Clinical Parameters (1989)

In order to characterize intraluminal airway inflammation in subjects with chronic bronchitis, bronchoscopy and bronchoalveolar lavage were performed in 28 subjects with chronic bronchitis with fixed airway obstruction and, for comparison, 15 asymptomatic smokers and 25 normal nonsmoking volunteers. The chronic bronchitics had a cough productive of sputum on most days of the month for 6 months in the preceding 2 yr, had at least one exacerbation requiring medical intervention in each of the previous 2 yr, and had an FEV1 less than 76% of predicted without response to bronchodilator. During bronchoscopy the airways were assessed for visual evidence of inflammation by assigning them a score, the bronchitis index, that graded the airways according to the apparent severity of airway edema, erythema, friability, and secretions. Bronchoalveolar lavage was performed by sequentially instilling and retrieving with gentle suction five 20-ml aliquots of sterile normal saline into each of three separate lobes. The first aliquots, the "bronchial" sample, were pooled and processed separately from the final four aliquots, the "distal" sample. Cell counts, cell differentials, and albumin were determined for both the bronchial and distal samples. In order to correlate inflammation with clinical parameters, sputum was collected for 24 h prior to bronchoscopy; spirometry was performed just prior to bronchoscopy, and smoking histories were obtained. Visual inspection of the airways, as quantified by the bronchitis index, demonstrated significantly more evidence for inflammation in the chronic bronchitics than in either the asymptomatic smokers or the normal subjects. The bronchial sample lavage fluids from the chronic bronchitics tended to contain more cells (6.1 +/- 2.2 x 10(6) cells) than the bronchial sample fluids from the asymptomatic smokers (3.6 +/- 0.6 x 10(6) cells) or normal subjects (3.7 +/- 0.5 x 10(6) cells). Furthermore, the chronic bronchitics had a higher percentage of neutrophils in their bronchial lavage fluid (35.8 +/- 5.6%) than did either the asymptomatic smokers (20.7 +/- 2.6%, p = 0.0001) or the normal subjects (10.3 +/- 5.6%). The distal sample lavage fluid also recovered more neutrophils from both the chronic bronchitics (15.0 +/- 4.2%, p = 0.0012) and asymptomatic smokers (5.7 +/- 1.3%, p = 0.002) than from the normal subjects (2.8 +/- 0.4%). The chronic bronchitics were divided into two groups: those with low (less than 20%) and those with high (greater than 20%) bronchial sample neutrophils. Those with higher bronchial sample neutrophils had significantly more sputum production and lower FEV1, FEV1/FVC, and FEF25-75 than did the subjects with lower bronchial sample neutrophils.(ABSTRACT TRUNCATED AT 400 WORDS)
Group Re-Identification With Group Context Graph Neural Networks (2020)

Group re-identification aims to match groups of people across disjoint cameras. In this task, the contextual information from neighbor individuals can be exploited for re-identifying each individual within the group as well as the entire group. However, compared with single person re-identification, it brings new challenges including group layout and group membership changes. Motivated by the observation that individuals who are close together are more likely to keep in the same group under different cameras than those who are far apart, we propose to model each group as a spatial K-nearest neighbor graph (SKNNG) and design a group context graph neural network (GCGNN) for graph representation learning. Specifically, for each node in the graph, the proposed GCGNN learns an embedding which aggregates the contextual information from neighbor nodes. We design multiple weighting kernels for neighborhood aggregation based on the graph properties including node in-degrees and spatial relationship attributes. We compute the similarity scores between node embeddings of two graphs for group member association and obtain the matching score between the two graphs by summing up the similarity scores of all linked node pairs. Experimental results on three public datasets show that our approach performs favorably against state-of-the-art methods and achieves high efficiency.
Tertiary Aminourea‐Catalyzed Enantioselective Iodolactonization (2010)

Binding the anion: A highly enantioselective iodolactonization of 5-hexenoic acids has been achieved using a tertiary aminourea-catalyst (see scheme). The use of catalytic iodine in this process is critical to enhancing both the reactivity and enantioselectivity of the stoichiometric I+ source. The mechanism is proposed to involve binding of an iodonium imidate intermediate by the H-bond donor catalyst. Detailed facts of importance to specialist readers are published as ”Supporting Information”. Such documents are peer-reviewed, but not copy-edited or typeset. They are made available as submitted by the authors. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
Base-station repositioning for optimized performance of sensor networks (2003)

Most of the energy aware routing approaches for unattended wireless sensor networks pursue multi-hop paths in order to minimize the total transmission power. Since almost in all sensor networks data are routed towards a single sink (base-station), hops close to that sink become heavily involved in packet forwarding and thus their batteries get depleted rather quickly. In this paper we investigate the potential of base-station repositioning for enhanced network performance. We address issues related to when should the base-station be relocated, where it would be moved to and how to handle its motion without any effect on data traffic. Our approach tracks the distance from the closest hops to the base-station and the traffic density through these hops. When a hop that forward high traffic is further than a threshold the base-station qualifies the impact of the relocation on the network performance and moves if the overhead is justified. The presented approach is validated in a simulated environment.
Analysis of organic semiconductor multilayers with Ar cluster secondary ion mass spectrometry (2010)

Abstract The demand for direct analytical techniques for characterization and damage evaluation of organic devices has increased dramatically in recent years, along with an increase in the importance of these devices. In this study, we demonstrate direct analysis of model structures for organic light emitting diode (OLED) devices by using SIMS with large Ar cluster ion beams. We prepared single and multilayer films of organic semiconductor materials by vacuum evaporation and analyzed their surfaces with time‐of‐flight secondary ion mass spectrometry (ToF‐SIMS). Under bombardment with large Ar cluster ions, the predominant species observed were molecular ions from the organic materials, while small fragment ions were strongly suppressed. Moreover, the multilayer films were depth profiled with Ar cluster ion beams, and the interfaces between the organic layers could be clearly distinguished. These results show the promising potential of large Ar cluster ion beams for direct analysis of real organic semiconductor devices. Copyright © 2010 John Wiley & Sons, Ltd.
Lotus (Nelumbo nuficera) flower essential oil increased melanogenesis in normal human melanocytes (2009)

In this study, the essential oil from lotus flower extract, including petals and stamens, was assessed with regard to its effects on melanogenesis in human melanocytes. The lotus flower essential oil was shown to stimulate melanin synthesis and tyrosinase activity in a dose-dependent manner. The lotus flower essential oil induced the expression of tyrosinase, microphthalmia-associated transcription factor M (MITF-M), and tyrosinase-related proten-2 (TRP-2) proteins, but not tyrosinase mRNA. Moreover, it increased the phosphorylation of ERK and cAMP response element binding protein (CREB). In order to verify the effective components of the lotus flower oil, its lipid composition was assessed. It was found to be comprised of palmitic acid methyl ester (22.66%), linoleic acid methyl ester (11.16%), palmitoleic acid methyl ester (7.55%) and linolenic acid methyl ester (5.16%). Among these components, palmitic acid methyl ester clearly induced melanogenesis as the result of increased tyrosinase expression, thereby indicating that it may play a role in the regulation of melanin content. Thus, our results indicate that lotus flower oil may prove useful in the development of gray hair prevention agents or tanning reagents.
Stability of axial flow in an annulus with a rotating inner cylinder (1992)

Flow between concentric cylinders with the inner cylinder rotating and an axial pressure gradient imposed in the annulus reveals a rich variety of flow regimes depending on the flow conditions. The occurrence of these flow regimes was studied experimentally by both visually and optically detecting the transition from one flow regime to another over a wide range of Taylor numbers for moderate axial Reynolds numbers. Seven flow regimes of toroidal vortices were identified, including Taylor vortices, wavy vortices, random wavy vortices, modulated wavy vortices, turbulent modulated wavy vortices, turbulent wavy vortices, and turbulent vortices. The toroidal vortices in these flow regimes look similar to the corresponding vortices when there is no axial flow, except that they translate with the axial flow at a speed slightly greater than the bulk axial velocity. Three flow regimes of helical vortices were observed at low Taylor numbers, including laminar helical vortices, stationary helical vortices, and wavy helical vortices. Depending on the flow parameters, the helical vortices had both positive and negative helix angles with respect to the bulk flow and appeared either stationary or moving downstream. Another flow regime consisting of the repeating sequential appearance of turbulent wavy vortices, turbulent helical vortices, and turbulent vortices was also observed.
The ND-IRIS-0405 Iris Image Dataset (2016)

The Computer Vision Research Lab at the University of Notre Dame began collecting iris images in the spring semester of 2004. The initial data collections used an LG 2200 iris imaging system for image acquisition. Image datasets acquired in 2004-2005 at Notre Dame with this LG 2200 have been used in the ICE 2005 and ICE 2006 iris biometric evaluations. The ICE 2005 iris image dataset has been distributed to over 100 research groups around the world. The purpose of this document is to describe the content of the ND-IRIS-0405 iris image dataset. This dataset is a superset of the iris image datasets used in ICE 2005 and ICE 2006. The ND 2004-2005 iris image dataset contains 64,980 images corresponding to 356 unique subjects, and 712 unique irises. The age range of the subjects is 18 to 75 years old. 158 of the subjects are female, and 198 are male. 250 of the subjects are Caucasian, 82 are Asian, and 24 are other ethnicities.
Nerve Growth Factor-stimulated B-Raf Catalytic Activity Is Refractory to Inhibition by cAMP-dependent Protein Kinase (1999)

The cAMP-dependent protein kinase (PKA) exhibits both inhibitory and stimulatory effects upon growth factor signaling mediated by the mitogen-activated protein kinase signaling pathway. PKA has been demonstrated to inhibit Raf-1-mediated cellular proliferation. PKA can both prevent Ras-dependent Raf-1 activation and directly inhibit Raf-1 catalytic activity. In contrast to the inhibitory effect of PKA on Raf-1-dependent processes, PKA potentiates nerve growth factor-stimulated PC12 cell differentiation, a B-Raf mediated process. This potentiation, rather than inhibition, of PC12 cell differentiation is curious in light of the ability of PKA to inhibit Raf-1 catalytic activity. The kinase domains of Raf-1 and B-Raf are highly conserved, and it has been predicted that B-Raf catalytic activity would also be inhibited by PKA. In this study we examined the ability of PKA to regulate the kinase activity of the B-raf proto-oncogene. We report that nerve growth factor-stimulated B-Raf activity is not inhibited by PKA. By contrast, an N-terminally truncated, constitutively active form of B-Raf is inhibited by PKA both in vitro and in transfected PC12 cells. These results suggest that the N-terminal regulatory domain interferes with the ability of PKA to modulate B-Raf catalytic activity and provide an explanation for the observed resistance of B-Raf-dependent processes to PKA inhibition.
Mesenchymal Stem Cells Enhance Nerve Regeneration in a Rat Sciatic Nerve Repair and Hindlimb Transplant Model (2016)

This study investigates the efficacy of local and intravenous mesenchymal stem cell (MSC) administration to augment neuroregeneration in both a sciatic nerve cut-and-repair and rat hindlimb transplant model. Bone marrow-derived MSCs were harvested and purified from Brown-Norway (BN) rats. Sciatic nerve transections and repairs were performed in three groups of Lewis (LEW) rats: negative controls (n = 4), local MSCs (epineural) injection (n = 4), and systemic MSCs (intravenous) injection (n = 4). Syngeneic (LEW-LEW) (n = 4) and allogeneic (BN-LEW) (n = 4) hindlimb transplants were performed and assessed for neuroregeneration after local or systemic MSC treatment. Rats undergoing sciatic nerve cut-and-repair and treated with either local or systemic injection of MSCs had significant improvement in the speed of recovery of compound muscle action potential amplitudes and axon counts when compared with negative controls. Similarly, rats undergoing allogeneic hindlimb transplants treated with local injection of MSCs exhibited significantly increased axon counts. Similarly, systemic MSC treatment resulted in improved nerve regeneration following allogeneic hindlimb transplants. Systemic administration had a more pronounced effect on electromotor recovery while local injection was more effective at increasing fiber counts, suggesting different targets of action. Local and systemic MSC injections significantly improve the pace and degree of nerve regeneration after nerve injury and hindlimb transplantation.
The OLYMPUS Architecture—Oblivious Identity Management for Private User-Friendly Services (2020)

Privacy enhancing technologies (PETs) allow to achieve user's transactions unlinkability across different online Service Providers. However, current PETs fail to guarantee unlinkability against the Identity Provider (IdP), which becomes a single point of failure in terms of privacy and security, and therefore, might impersonate its users. To address this issue, OLYMPUS EU project establishes an interoperable framework of technologies for a distributed privacy-preserving identity management based on cryptographic techniques that can be applied both to online and offline scenarios. Namely, distributed cryptographic techniques based on threshold cryptography are used to split up the role of the Identity Provider (IdP) into several authorities so that a single entity is not able to impersonate or track its users. The architecture leverages PET technologies, such as distributed threshold-based signatures and privacy attribute-based credentials (p-ABC), so that the signed tokens and the ABC credentials are managed in a distributed way by several IdPs. This paper describes the Olympus architecture, including its associated requirements, the main building blocks and processes, as well as the associated use cases. In addition, the paper shows how the Olympus oblivious architecture can be used to achieve privacy-preserving M2M offline transactions between IoT devices.
Generalized Expectation Criteria for Semi-Supervised Learning of Conditional Random Fields (2008)

This paper presents a semi-supervised training method for linear-chain conditional random fields that makes use of labeled features rather than labeled instances. This is accomplished by using generalized expectation criteria to express a preference for parameter settings in which the model's distribution on unlabeled data matches a target distribution. We induce target conditional probability distributions of labels given features from both annotated feature occurrences in context and adhoc feature majority label assignment. The use of generalized expectation criteria allows for a dramatic reduction in annotation time by shifting from traditional instance-labeling to feature-labeling, and the methods presented outperform traditional CRF training and other semi-supervised methods when limited human effort is available.
Hepatitis C virus infection in chronic liver disease in Natal. (1996)

The aim of this cross-sectional seroprevalence study was to determine the prevalence of antibodies to hepatitis C virus (HCV) (anti-HCV) in patients with cirrhosis, hepatocellular carcinoma (HCC) and chronic active hepatitis (CAH) attending a referral hospital in a hepatitis B virus (HBV)-endemic area in South Africa. One hundred and ten patients with suspected cirrhosis, 44 with suspected HCC and 6 with chronic hepatitis were initially included. The diagnoses were confirmed in 77 patients with cirrhosis (histologically or macroscopically at peritoneoscopy), 33 patients with HCC (histologically or elevated alpha-fetoprotein levels plus focal lesion on hepatic imaging) and 6 patients with CAH (histologically) without antinuclear antibodies. All patients were tested for anti-HCV with the Abbott second-generation enzyme immunoassay combined with a supplemental neutralisation assay, and hepatitis B surface antigen (HBsAg). Anti-HCV seroprevalence for cirrhosis, HCC and CAH were 18/77 (23%), 8/33 (24%) and 2/6 (33%) respectively. HBsAg was detected in serum in 16 (21%), 15 (46%) and 1 (17%) patient respectively. Only 1 patient (with cirrhosis) was positive for both anti-HCV and HBsAg. Of those who were anti-HCV-positive, 4/18 (22.2%) cirrhotics, none with HCC and 1/2 (50%) with CAH, had previously received blood transfusions, resulting in a cumulative frequency of 5/28 (18%). Our results indicate that HCV is an important aetiological agent in the pathogenesis of chronic liver disease in our patients. In the majority of patients (82%), the infection was not transfusion-related. Thus, screening of blood donors for anti-HCV would not prevent the majority of cases of chronic liver disease secondary to HCV. It appears as if HCV and HBV have different modes of transmission in southern Africa.
Environmental signals influencing expression of the IFN-gamma receptor on human T cells control whether IFN-gamma promotes proliferation or apoptosis. (1994)

IFN-gamma R expression is subject to contrasting modulation on human T cells. IFN-gamma R constitutive expression is low on three human malignant T cells (ST4, PF382, and Jurkat) growing in medium supplemented with serum. The addition of IFN-gamma down-modulates IFN-gamma R expression and increases both proliferation and MHC class I Ag expression. By contrast, when malignant T cells are cultured in medium without serum, IFN-gamma R expression dramatically increases and the cells undergo a slow apoptotic death. The addition of IFN-gamma enhances apoptosis and inhibits cell rescue in serum-supplemented medium. This opposite ability of IFN-gamma to stimulate malignant T cell proliferation or death correlates with the intensity of IFN-gamma R cell expression, high expression being a marker for cell apoptosis. IFN-gamma R up-modulation also occurs on malignant T cells undergoing apoptosis after treatment with dexamethasone, on irradiated normal CD3+ PBL, and on cultured normal CD3+ thymocytes. Moreover, the ability of IFN-gamma to augment apoptosis of highly IFN-gamma R-positive thymocytes suggests that its role in promoting T cell apoptosis is also important in physiologic conditions.
Thermodynamics and structure of a DNA tetraplex: a spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T). (1992)

We report a combined thermodynamic and structural characterization of a DNA tetraplex. Using spectroscopic and calorimetric techniques, we demonstrate that d(TG3T) and d(TG3T2G3T), in the presence of K+, form stable tetramolecular complexes. From differential scanning calorimetry measurements, we obtain the following thermodynamic profiles for formation of each tetraplex at 25 degrees C: delta G degrees = -6.9 kcal/mol of tetraplex (or -2.3 kcal/mol of tetrad; 1 cal = 4.184 J), delta H degrees = -62.6 kcal/mol of tetraplex (or -20.9 kcal/mol of tetrad), and delta S degrees = -186.9 cal.K-1.mol-1 of tetraplex (or -62.3 cal.K-1.mol-1 of tetrad) for the d(TG3T) tetraplex; and delta G degrees = -20.2 kcal/mol of tetraplex (or -3.4 kcal/mol of tetrad), delta H degrees = -123.2 kcal/mol of tetraplex (or -20.5 kcal/mol of tetrad), and delta S degrees = -346.0 cal.K-1.mol-1 of tetraplex (or -57.7 cal.K-1.mol-1 of tetrad) for the d(TG3T2G3T) tetraplex. These data demonstrate that at 25 degrees C a G-tetrad can exhibit considerable stability, comparable to or even exceeding that of most Watson-Crick nearest-neighbor interactions, with this stability resulting from a very favorable enthalpy of formation. Temperature-dependent CD measurements reveal that the melting temperatures of both tetraplexes exhibit unusually low salt dependences. This unexpected behavior may reflect a diminished charge density due to bound K+ ions. For each complex, the Na+ and K+ forms exhibit drastically different isothermal and temperature-dependent CD profiles, with the K+ forms of each tetraplex melting more sharply and at a higher temperature than the Na+ forms. Using one- and two-dimensional NMR techniques, we show that the strands in the tetramolecular complex of d(TG3T), K+ are all parallel and that the guanine glycosidic conformations are all anti.
Diffusion of Boron into Silicon from Borosilicate Glass Using Rapid Thermal Processing (1991)

Diffusion of boron into Si from borosilicate glass (BSG) using rapid thermal processing (RTP) is studied. Sheet resistance of diffused layers in RTP doping decreases more steeply with diffusion time t than for short diffusion times and low diffusion temperatures. This corresponds to a rapid increase in surface boron concentration at the initial stage of diffusion. This is attributed to the presence of thin native oxide between BSG and Si. The time required for surface boron concentration to be saturated is shorter for higher boron‐concentration BSG. Boron diffusion in Si is enhanced for diffusion from BSG in which the boron concentration is larger than 18 atom percent (a/o). Enhanced diffusion is also observed for furnace diffusion from BSG where the boron concentration is larger than 18%, but not for 7% BSG. Enhanced diffusion is not observed during RTP if BSG is not present. From these results, it is clarified that the origin of enhanced diffusion is not in RTP but inherent in the BSG/Si system itself, and it occurs for diffusion from high boron‐concentration BSG.