gebhart/patrepeval huggingface dataset:
Counting membrane-embedded KCNE β-subunits in functioning K <sup>+</sup> channel complexes (2008)

Ion channels are multisubunit proteins responsible for the generation and propagation of action potentials in nerve, skeletal muscle, and heart as well as maintaining salt and water homeostasis in epithelium. The subunit composition and stoichiometry of these membrane protein complexes underlies their physiological function, as different cells pair ion-conducting alpha-subunits with specific regulatory beta-subunits to produce complexes with diverse ion-conducting and gating properties. However, determining the number of alpha- and beta-subunits in functioning ion channel complexes is challenging and often fraught with contradictory results. Here we describe the synthesis of a chemically releasable, irreversible K(+) channel inhibitor and its iterative application to tally the number of beta-subunits in a KCNQ1/KCNE1 K(+) channel complex. Using this inhibitor in electrical recordings, we definitively show that there are two KCNE subunits in a functioning tetrameric K(+) channel, breaking the apparent fourfold arrangement of the ion-conducting subunits. This digital determination rules out any measurable contribution from supra, sub, and multiple stoichiometries, providing a uniform structural picture to interpret KCNE beta-subunit modulation of voltage-gated K(+) channels and the inherited mutations that cause dysfunction. Moreover, the architectural asymmetry of the K(+) channel complex affords a unique opportunity to therapeutically target ion channels that coassemble with KCNE beta-subunits.
Asynchronous transfer mode receiver (1992)

Asynchronous cell-based transmission is the preferred transmission mode for emerging high-speed network standards such as the IEEE 802.6 metropolitan area network standard and the CCITT broadband integrated services digital network. These networks are envisaged to operate at bit rates in excess of 100 Mbit/s. The high bit rate and the cell-based mode of transmission pose challenging requirements on memory-buffer management and the reassembly of packets from constituent cells. The paper describes hardware architecture and memory-management techniques developed to achieve the required packet-reassembly functions and buffer-memory management for a node operating in a high speed asynchronous-transfer-mode-based network. The paper also discusses a number of major generic issues addressed during the development.
Disruption of SLP-76 Interaction with Gads Inhibits Dynamic Clustering of SLP-76 and FcεRI Signaling in Mast Cells (2006)

We developed a confocal real-time imaging approach that allows direct observation of the subcellular localization pattern of proteins involved in proximal FcepsilonRI signaling in RBL cells and primary bone marrow-derived mast cells. The adaptor protein Src homology 2 (SH2) domain-containing leukocyte phosphoprotein of 76 kDa (SLP-76) is critical for FcepsilonRI-induced calcium flux, degranulation, and cytokine secretion. In this study, we imaged SLP-76 and found it in the cytosol of unstimulated cells. Upon FcepsilonRI cross-linking, SLP-76 translocates to the cell membrane, forming clusters that colocalize with the FcepsilonRI, the tyrosine kinase Syk, the adaptor LAT, and phosphotyrosine. The disruption of the SLP-76 interaction with its constitutive binding partner, Gads, through the mutation of SLP-76 or the expression of the Gads-binding region of SLP-76, inhibits the translocation and clustering of SLP-76, suggesting that the interaction of SLP-76 with Gads is critical for appropriate subcellular localization of SLP-76. We further demonstrated that the expression of the Gads-binding region of SLP-76 in bone marrow-derived mast cells inhibits FcepsilonRI-induced calcium flux, degranulation, and cytokine secretion. These studies revealed, for the first time, that SLP-76 forms signaling clusters following FcepsilonRI stimulation and demonstrated that the Gads-binding region of SLP-76 regulates clustering of SLP-76 and FcepsilonRI-induced mast cell responses.
Pb<sub>7</sub>Bi<sub>4</sub>Se<sub>13</sub>: A Lillianite Homologue with Promising Thermoelectric Properties (2014)

Pb(7)Bi(4)Se(13) crystallizes in the monoclinic space group C2/m (No. 12) with a = 13.991(3) Å, b = 4.262(2) Å, c = 23.432(5) Å, and β = 98.3(3)° at 300 K. In its three-dimensional structure, two NaCl-type layers A and B with respective thicknesses N(1) = 5 and N(2) = 4 [N = number of edge-sharing (Pb/Bi)Se6 octahedra along the central diagonal] are arranged along the c axis in such a way that the bridging monocapped trigonal prisms, PbSe7, are located on a pseudomirror plane parallel to (001). This complex atomic-scale structure results in a remarkably low thermal conductivity (∼0.33 W m(-1) K(-1) at 300 K). Electronic structure calculations and diffuse-reflectance measurements indicate that Pb(7)Bi(4)Se(13) is a narrow-gap semiconductor with an indirect band gap of 0.23 eV. Multiple peaks and valleys were observed near the band edges, suggesting that Pb(7)Bi(4)Se(13) is a promising compound for both n- and p-type doping. Electronic-transport data on the as-grown material reveal an n-type degenerate semiconducting behavior with a large thermopower (∼-160 μV K(-1) at 300 K) and a relatively low electrical resistivity. The inherently low thermal conductivity of Pb(7)Bi(4)Se(13) and its tunable electronic properties point to a high thermoelectric figure of merit for properly optimized samples.
Preoperative levosimendan decreases mortality and the development of low cardiac output in high-risk patients with severe left ventricular dysfunction undergoing coronary artery bypass grafting with cardiopulmonary bypass. (2012)

Patients with severe left ventricle dysfunction (ejection fraction <25%) undergoing coronary artery bypass grafting with CPB who were pretreated with levosimendan exhibited lower mortality, a decreased risk for developing LCOS and a reduced requirement for inotropes, vasopressors and intra-aortic balloon pumps. Studies with a larger number of patients are required to confirm whether these findings represent a new strategy to reduce the operative risk in this high-risk patient population.
A clinical trial of creatine in ALS (2004)

Any beneficial effect of creatine at 5 g per day in ALS must be small. Other agents should be considered in future studies of therapeutic agents to address mitochondrial dysfunction in ALS. In addition, motor unit number estimation may be a useful outcome measure for future clinical trials in ALS.
Evidence for presynaptic N-methyl-D-aspartate autoreceptors in the spinal cord dorsal horn. (1994)

The N-methyl-D-aspartate (NMDA) receptor has been implicated in a variety of systems that undergo plastic changes in the central nervous system. We used electron microscopic immunocytochemistry with an antibody directed against an alternatively spliced exon near the C terminus of NMDAR1, the essential functional subunit of the NMDA receptor, to study the distribution of the NMDA receptor in the spinal cord and CA1 region of the hippocampus, two regions where NMDA-mediated long-term plasticity has been demonstrated. In CA1, we found that the NMDA receptor is exclusively expressed on postsynaptic structures. By contrast, in the spinal cord we found that in about one-third of labeled synapses, the receptor is located in the presynaptic terminal, immediately adjacent to the vesicle release site at the active zone. Using combined postembedding immunocytochemistry, we also showed that > 70% of the NMDA receptor immunoreactive terminals are glutamate positive, which suggests that the presynaptic NMDA receptor is an autoreceptor. Nerve ligation studies demonstrated that the receptor is transported in dorsal roots and sciatic nerve to the spinal cord and periphery, respectively. These data indicate that an NMDA autoreceptor is located in terminals of primary afferent fibers, where it could facilitate the transmission of inputs to the spinal cord by increasing the release of neurotransmitter from the primary afferent terminal.
Localizing actions through sequential 2D video projections (2011)

Action detection in video is a particularly difficult problem because actions must not only be recognized correctly, but must also be localized in the 3D spatio-temporal volume. This paper introduces a technique that transforms the 3D localization problem into a series of 2D detection tasks. This is accomplished by dividing the video into overlapping segments, then representing each segment with a 2D video projection. The advantage of the 2D projection is that it makes it convenient to apply the best techniques from object detection to the action detection problem. Our experiments show that video projection outperforms the latest results on action detection in a direct comparison.
Designing fault tolerant systems into SRAM-based FPGAs (2003)

This paper discusses high level techniques for designing fault tolerant systems in SRAM-based FPGAs, without modification in the FPGA architecture. Triple Modular Redundancy (TMR) has been successfully applied in FPGAs to mitigate transient faults, which are likely to occur in space applications. However, TMR comes with high area and power dissipation penalties. The new technique proposed in this paper was specifically developed for FPGAs to cope with transient faults in the user combinational and sequential logic, while also reducing pin count, area and power dissipation. The methodology was validated by fault injection experiments in an emulation board. We present some fault coverage results and a comparison with the TMR approach.
Increased Islet Volume but Unchanged Islet Number in <i>ob/ob</i> Mice (2003)

It is important for our understanding of the pancreatic islets to study whether new islets are able to form in the intact pancreas. We developed a new method to determine the total number and the mean volume of the pancreatic islets, and we used this method to study the expansion of the islet mass in ob/ob mice (n = 8), using ob/+ mice (n = 8) as controls. The total islet volume was increased by a factor of 3.6 in ob/ob mice compared with ob/+ mice, whereas, importantly, the total number of islets did not differ among ob/ob mice and ob/+ mice (3,193 +/- 160 islets in ob/ob mice vs. 3,184 +/- 142 islets in ob/+ mice, P = 0.97). The coefficient of variation in the volume distribution of islets was equal in the two groups, showing that in ob/ob mice, the existing islets expand their volume by the same proportion, without a net formation of new islets. We suggest that the pancreatic islets should be considered as anatomically such complex structures that islet neogenesis does not spontaneously occur in an intact pancreas. Cells within the existing islets are presumably the most important sources for islet cell hyperplasia during expansion of the total islet mass.
High affinity antibodies against Lex and sialyl Lex from a phage display library (1996)

Our previous studies of seven murine mAbs against the carbohydrate Lex Ag demonstrated that they were all encoded by VH441 and V kappa 24B. To obtain higher affinity Abs, and to ascertain whether their L chains could be encoded by other genes, we constructed a phage display library in a modified pComb 8 vector. The library contained random L chains, and Fd segments enriched in VH domains encoded by the VHX24 gene family. We selected phage with an Lex-BSA Ag, and obtained two Fab mAbs, clones 23 and 24, whose affinities were more than 100-fold higher than hybridoma mAb PM81. Both new mAbs were encoded by VH441, and their L chains were encoded by genes of the V kappa Ox1 and V kappa 9 families. In contrast to hybridoma mAb PM81, which binds only Lex, clones 23 and 24 bound sialyl Lex (SLex) as well as Lex, and clone 23 also binds the backbone carbohydrate structure nLacCer. Analysis of the binding of these three mAbs to synthetic glycolipids that contained structural modifications indicated that they recognize different aspects of the Lex structure, and suggested that they bind to limited regions of the oligosaccharide.
Folded Basinal Compartments of the Southern Mongolian Borderland: A Structural Archive of the Final Consolidation of the Central Asian Orogenic Belt (2017)

The Central Asian Orogenic Belt (CAOB) records multiple Phanerozoic tectonic events involving consolidation of disparate terranes and cratonic blocks and subsequent reactivation of Eurasia’s continental interior. The final amalgamation of the CAOB terrane collage involved diachronous closure of the Permian-Triassic Solonker suture in northernmost China and the Jurassic Mongol-Okhotsk suture in northeast Mongolia and eastern Siberia. The distribution, style, and kinematics of deformation associated with these two terminal collision events is poorly documented in southern Mongolia and northernmost China because these regions were later tectonically overprinted by widespread Cretaceous basin and range-style crustal extension and Miocene-recent sinistral transpressional mountain building. These younger events structurally compartmentalized the crust into uplifted crystalline basement blocks and intermontane basins. Consequently, widespread Cretaceous and Late Cenozoic clastic sedimentary deposits overlie older Permian-Jurassic sedimentary rocks in most basinal areas and obscure the deformation record associated with Permian-Triassic Solonker and Jurassic Mongol-Okhotsk collisional suturing. In this report, satellite image mapping of basinal compartments that expose folded Permian-Jurassic sedimentary successions that are unconformably overlapped by Cretaceous-Quaternary clastic sediments is presented for remote and poorly studied regions of southern Mongolia and two areas of the Beishan. The largest folds are tens of kilometers in strike length, east-west trending, and reveal north-south Late Jurassic shortening (present coordinates). Late Jurassic fold vergence is dominantly northerly in the southern Gobi Altai within a regional-scale fold-and-thrust belt. Local refolding of older Permian north-south trending folds is also evident in some areas. The folds identified and mapped in this study provide new evidence for the regional distribution and kinematics of Jurassic and Permian-Triassic contractional tectonism in the southern Mongolia-northern China borderland region. The newly mapped folds are also important potential targets for hydrocarbon exploration and vertebrate paleontological discoveries.
New directional {Theta}-weighted S{sub N} differencing scheme (1995)

Recent studies have demonstrated inherent numerical difficulties in some multidimensional S{sub N} algorithms when applied to shielding problems, i.e., spatial oscillations in calculated flux distribution, which remained in spite of mesh refinement. Further, it has been shown that these difficulties are caused by the differencing schemes. This paper describes a new directional {Theta}-weighted (DTW) differencing scheme that has been developed to alleviate these difficulties and presents corresponding improvements in S{sub N} solutions obtained for simple test problems using this scheme. A companion paper examines the application of this new scheme to a complex actual application, pressure vessel fluence calculation.
Temperature Estimation in Trailer Disc Brake (2015)

Automatic brake functions in trucks and cars can save lives but may heat the brakes to dangerous temperature levels. Various types of models for temperature estimation in a disc brake have been evaluated. A homogeneous temperature inside the disc was assumed and this simplification gave adequate modeling results. The implementation was done in Simulink. One model estimated the heat generation based on the kinetic energy difference during a brake event. The difficulty of estimating driving resistance coefficients and the sensitivity to the driver’s behavior made this model less suitable for generalization. More promising models used the brake cylinder pressure as input. The brake cylinder pressure was used to derive a braking force at the periphery of each wheel. The braking force could be determined in different ways, each one with their own advantages and disadvantages. The common disadvantage was that the brake force depends on the load over each wheel. It was assumed that the load over each wheel be known. A simple, exponential model for cooling gave sufficiently good results. A model based on the sum of convection and radiation gave better results. The brake pressure model was used in a short study on steady state temperatures, while the vehicle was pulse braked. No conclusions was drawn from these simulations, but the results were promising, thus opening up for future research.
Risedronate Preserves Trabecular Architecture and Increases Bone Strength in Vertebra of Ovariectomized Minipigs as Measured by Three-Dimensional Microcomputed Tomography (2002)

Risedronate reduces the risk of new vertebral fractures up to 70% within 1 year of treatment in patients with osteoporosis. Both increases in bone mass and preservation of bone architecture are thought to contribute to antifracture effects. Our objectives were to determine the effects of risedronate on trabecular bone mass and architecture and to determine the relative contributions of mass and architecture to strength in the vertebra of ovariectomized (OVX) minipigs. The minipigs were OVX at 18 months of age and were treated daily for 18 months with either vehicle or risedronate at doses of 0.5 mg/kg per day or 2.5 mg/kg per day. The three-dimensional (3D) bone architecture of the L4 vertebral cores of Sinclair S1 minipigs was evaluated by 3D microcomputed tomography (muCT). Compared with the OVX control, the vertebral bone volume (bone volume/tissue volume [BV/TV]) was higher in both treated groups (p < 0.05). The architectural changes were more significant at the 2.5-mg/kg dose and were more prevalent at the cranial-caudal ends compared with the midsection. At the higher dose, the trabecular thickness (Tb.Th), trabecular number (Tb.N), and connectivity were higher, and marrow star volume (Ma.St.V) and trabecular separation (Tb.Sp) were lower (p < 0.05). The trabecular separation variation index (TSVI), a new measure to approximate structural variations, was smaller in the 2.5-mg/kg-treated group (p < 0.05). In this group, a significant preservation of trabeculae orthogonal to the cranial-caudal axis was confirmed by a decrease in the degree of anisotropy (DA) and an increase in the percent Cross-strut (% Cross-strut; p < 0.05). Both normalized maximum load (strength) and normalized stiffness of the same vertebral cores were higher in the 2.5-mg/kg risedronate group compared with the OVX group (p < 0.05). BV/TV alone could explain 76% of the variability of the bone strength. The combination of bone volume and architectural variables explained >90% of the strength. The study showed that risedronate preserved trabecular architecture in the vertebra of OVX minipigs, and that bone strength is tightly coupled to bone mass and architecture.
Robust Optimization of the Loaded Contact Pattern in Hypoid Gears With Uncertain Misalignments (2010)

This paper presents an automatic procedure to optimize the loaded tooth contact pattern of face-milled hypoid gears with misalignments varying within prescribed ranges. A two-step approach is proposed to solve the problem: in the first step, the pinion tooth microtopography is automatically modified to bring the perturbed contact patterns (as the assembly errors are varied within the tolerance limits) match a target area of the tooth while keeping them off the edges; in the second step, a subset of the machine-tool settings is identified to obtain the required topography modifications. Both steps are formulated and solved as unconstrained nonlinear optimization problems. While the general methodology is similar to the one recently proposed by the same authors for the optimization at nominal conditions, here, the robustness issues with respect to misalignment variations are considered and directly included in the optimization procedure: no a posteriori check for robustness is therefore required. Numerical tests show that nominally satisfactory and globally robust hypoid pairs can be designed by a direct process and within a unified framework, thus avoiding tiresome trial-and-error loops.
MPLS Fault Management Operations, Administration, and Maintenance (OAM) (2011)

This document specifies Operations, Administration, and Maintenance (OAM) messages to indicate service disruptive conditions for MPLSbased transport network Label Switched Paths. The notification mechanism employs a generic method for a service disruptive condition to be communicated to a Maintenance Entity Group End Point. This document defines an MPLS OAM channel, along with messages to communicate various types of service disruptive conditions.
Improved Low-Temperature Activity of V2O5-WO3/TiO2 for Denitration Using Different Vanadium Precursors (2016)

This work tested two V2O5-WO3/TiO2 catalysts with different vanadium precursors for selective catalytic reduction (SCR) of flue gas NO using NH3 at 150–450 °C. While catalyst A was prepared using ammonium metavanadate (NH4VO3) through incipient impregnation, catalyst B was made according to the solvothermal method using vanadyl acetylacetonate (VO(acac)2) as the vanadium precursor. The catalytic evaluation for denitration was in a laboratory fixed bed reactor using simulated flue gas under conditions of a gas hourly space velocity (GHSV) of 40,000 h−1 and an NH3/NO molar ratio of 0.8. Without SO2 and water vapor in the flue gas at 200 °C, the realized NO conversion was 56% for catalyst A but 80% for B. The presence of 350 ppm SO2 and 10 vol. % water vapor in the flue gas slightly reduced the NO conversion over catalyst B, and its activity was stable in a 108-h continuous test at temperatures varying from 450 °C to 220 °C. Via fourier transformation infrared spectroscopy (FT-IR) and thermogravimetric (TG) analysis, it was shown that over catalyst B a dynamic balance between the formation and decomposition of ammonium sulfite or sulfate is built possibly at temperatures as low as 220 °C. For this catalyst there was a higher surface atomic concentration of vanadium and a higher ratio of V4+/(V4+ + V5+), while the NH3 adsorption test revealed more acidic sites on catalyst B. The study discloses a potentially new approach to prepare a V2O5-WO3/TiO2 catalyst with good performance for SCR of flue gas NO at 220–300 °C.
Interaction of very low density lipoproteins (VLDL) with rabbit C-reactive protein. (1982)

Abstract Rabbit CRP is similar to human CRP in structure, kinetics of appearance, and binding reactivities to phosphate esters and cationic polymers. CRP in rabbit acute-phase serum migrates either with gamma or with beta, pre-beta electrophoretic mobility, and distinct gamma- and beta-migrating species can be observed simultaneously in some sera. The present study shows that beta-CRP in serum is converted to gamma mobility during isolation and purification. Normal, acute-phase, or CRP-depleted acute-phase rabbit serum restores the beta mobility of purified gamma-CRP, a conversion that does not occur in the presence of EDTA. Serum CRP fails to adsorb to DEAE-cellulose but does adsorb to CM-cellulose, from which it elutes as gamma-mobility antigen. Chelation by EDTA or flotation and removal of lipoproteins from acute phase rabbit serum produces a gamma-mobility CRP that adsorbs to the anion-exchange resin. Lipid-containing fractions from ion-exchange columns as well as VLDL (but not LDL or HDL) isolated by ultracentrifugation change the mobility of purified CRP from gamma to beta, pre-beta. These changes in mobility are not observed in the presence of EDTA or phosphocholine. In acute-phase rabbit serum with CRP of both beta and gamma mobility, the beta form has a higher m.w. and is lipid-associated, whereas the gamma form is a lower m.w., lipid-poor molecule. These results suggest that in serum the association of CRP with lipoproteins, particularly VLDL, is responsible for its beta, pre-beta electrophoretic mobility. Further studies of the association of CRP with lipoprotein in relation to lipoprotein metabolism may provide insight into the biological role of CRP.