gebhart/patrepeval huggingface dataset:
Cytometric comparisons between circulating tumor cells from prostate cancer patients and the prostate-tumor-derived LNCaP cell line (2012)

Many important experiments in cancer research are initiated with cell line data analysis due to the ease of accessibility and utilization. Recently, the ability to capture and characterize circulating tumor cells (CTCs) has become more prevalent in the research setting. This ability to detect, isolate and analyze CTCs allows us to directly compare specific protein expression levels found in patient CTCs to cell lines. In this study, we use immunocytochemistry to compare the protein expression levels of total cytokeratin (CK) and androgen receptor (AR) in CTCs and cell lines from patients with prostate cancer to determine what translational insights might be gained through the use of cell line data. A non-enrichment CTC detection assay enables us to compare cytometric features and relative expression levels of CK and AR by indirect immunofluorescence from prostate cancer patients against the prostate cancer cell line LNCaP. We measured physical characteristics of these two groups and observed significant differences in cell size, fluorescence intensity and nuclear to cytoplasmic ratio. We hope that these experiments will initiate a foundation to allow cell line data to be compared against characteristics of primary cells from patients.
Organoboron Compounds. VIII. Dihydrobenzoboradiazoles<sup>1</sup> (1958)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTOrganoboron Compounds. VIII. Dihydrobenzoboradiazoles1Robert L. Letsinger and Stephen B. HamiltonCite this: J. Am. Chem. Soc. 1958, 80, 20, 5411–5413Publication Date (Print):October 1, 1958Publication History Published online1 May 2002Published inissue 1 October 1958https://pubs.acs.org/doi/10.1021/ja01553a023https://doi.org/10.1021/ja01553a023research-articleACS PublicationsRequest reuse permissionsArticle Views532Altmetric-Citations42LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
An efficient vision-based traffic light detection and state recognition for autonomous vehicles (2017)

Traffic Light Detection(TLD) and understanding their state semantics at intersections plays a pivotal role in driver assistance systems and, by extension, autonomous vehicles. Despite of several reliable traffic light state detection approaches in literature, traffic light state recognition still remains an open problem due to outdoor perception challenge which includes occlusions, illumination and scale variations. This paper presents a vision-based traffic light structure detection and convolutional neural network (CNN) based state recognition method, which is robust under different illumination and weather conditions. In the first step, traffic light candidate regions are generated by performing HSV based color segmentation, which are then filtered out using shape and area analysis. Further, in order to incorporate the structural information of traffic light in diverse background scenarios, Maximally Stable Extremal Region (MSER) approach is employed, which helps to localize the correct traffic light structure in the image. To further validate the traffic light candidate regions, Histogram of Oriented Gradients (HOG) features are extracted for each region and traffic light structures are validated using Support Vector Machine (SVM). The state of the traffic lights are then recognized using CNN. To evaluate the performance of the proposed method, we present several results under a variety of lighting conditions in a real-world environment. Experimental result shows that the proposed method outperforms other vision based conventional methods under varying light and weather conditions.
An optimum filter design for discrete integration (1979)

Abstract An optimum design for convolutional filters that integrate discrete data is presented here. Such integration filters are rarely found in the literature, although counterparts for discrete differentiation are rather common. The subject filter is first defined in the frequency domain as a band-limited version of the exact integration response. Subsequent inverse Fourier transformation produces an analytical expression in the time domain. Although the resulting digitized impulse response cannot be expressed in closed form, it can be divided into a two-point recursive filter component and a longer, nonrecursive component. The length of the nonrecursive component must be user-selected according to the accuracy desired in the frequency domain; that is, a shorter filter acts as an integrator over a narrower frequency band. The included graph of frequency range as a function of nonrecursive component length allows the user to specify the compromise he desires between accuracy and computational effort.
Reliable broadcast in mobile multihop packet networks (1997)

We describe a reliable broadcast protocol for mobile multihop packet radio networks. The reliable broadcast service ensures that all the hosts in a group deliver the same set of messages to the upper layer. It represents the building block to construct fault tolerant distributed applications,, whose demand is growing in a mobile environment too. The protocol is intended for use in networks where the host mobility arbitrarily changes the network connectivity and where the rate of change is not so fast as to impose flooding as the only option. In this context, our protocol is a iirst attempt to show that a mechanism more flexible than spanning tree and more efficient than flooding is possible and a service such as the reliable broadcast can be obtained.
Differentiation of C3b receptors on human lymphocytes, phagocytes, erythrocytes and renal glomerulus cells by monoclonal antibodies. (1982)

C3b receptor protein was purified form human erythrocytes by 2 M KBr solubilization and affinity chromatography on C3-coated sepharose. This material served as antigen for raising monoclonal antibodies. To investigate the distribution and antigenetic relationship between the receptors for C3b on human erythrocytes, lymphoid and phagocytic cells, as well as kidney cells three monoclonal antibodies were selected which inhibited the binding of EAC14 degrees 23b to complement receptor-bearing cells. This could be shown for human erythrocytes by inhibiting the immune adherence reaction, for tonsil lymphocytes, Raji cells, and guinea-pig spleen cells by inhibition of rosette formation of these cells with EAC14 degrees 23b, and for human renal glomeruli by blocking of the the adherence of EAC14 degrees 23b to kidney sections. In contrast, these monoclonal antibodies were not capable of inhibiting rosette formation of human granulocytes and monocytes with EAC14 degrees 23b. The antibodies only interfered with the rosette formation, of EAC14 degrees 23bi and EAC14 degrees 23d with Raji cells and tonsil lymphocytes-if at all-at high concentrations, whereas the rosette formation of Raji cells and tonsil lymphocytes with EAC14 degrees 23b was influenced by supernatants of the selected clones up to a dilution of 1:10(3) to 1:10(5).
National Estimates of Insulin-Related Hypoglycemia and Errors Leading to Emergency Department Visits and Hospitalizations (2014)

Rates of ED visits and subsequent hospitalizations for IHEs were highest in patients 80 years or older; the risks of hypoglycemic sequelae in this age group should be considered in decisions to prescribe and intensify insulin. Meal-planning misadventures and insulin product mix-ups are important targets for hypoglycemia prevention efforts.
Small-scale heat detection using catalytic microengines irradiated by laser (2012)

We demonstrate a novel approach to modulating the motion speed of catalytic microtubular engines via laser irradiation/heating with regard to small-scale heat detection. Laser irradiation on the engines leads to a thermal heating effect and thus enhances the engine speed. During a laser on/off period, the motion behaviour of a microengine can be repeatable and reversible, demonstrating a regulation of motion speeds triggered by laser illumination. Also, the engine velocity exhibits a linear dependence on laser power in various fuel concentrations, which implies an application potential as local heat sensors. Our work may hold great promise in applications such as lab on a chip, micro/nano factories, and environmental detection.
Comparative responses of liposomes prepared with different ceramide antigens to antibody and complement (1971)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTComparative responses of liposomes prepared with different ceramide antigens to antibody and complementS. C. Kinsky, K. Inoue, and T. KataokaCite this: Biochemistry 1971, 10, 13, 2574–2581Publication Date (Print):June 1, 1971Publication History Published online1 May 2002Published inissue 1 June 1971https://pubs.acs.org/doi/10.1021/bi00789a025https://doi.org/10.1021/bi00789a025research-articleACS PublicationsRequest reuse permissionsArticle Views33Altmetric-Citations29LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Fluorinated Poly(<i>p</i>-phenylenevinylene) Copolymers:  Preparation and Use in Light-Emitting Diodes (1996)

A fluorinated poly(p-phenylenevinylene) analogue, co(TFPV-PV), has been prepared by copolymerization of fluorinated and nonfluorinated bissulfonium salt monomers. Conversion and yield decreased as a function of fluorine substitution. The UV−vis absorption was strongly shifted to the blue with increasing fluorine content. Complementary shifts in photoluminescence spectra were not observed, presumably because the fluorinated segments of the copolymer are very weakly luminescent relative to nonfluorinated segments. The photoluminescence spectra are therefore similar to those found for poly(p-phenylenevinylene) in the past. The co(TFPV-PV) compounds showed electroluminscence at an ac potential of ∼10 V (rms, 600 Hz) between ITO and Al electrodes. Maxima were shifted slightly to the blue with an increase in fluorine.
Spherical: an iterative workflow for assembling metagenomic datasets (2018)

We demonstrate the accuracy of Spherical using simulated data based on completely sequenced genomes and the effectiveness of the workflow at retrieving lost information for taxa in three published metagenomics studies of varying sizes. Our results show that Spherical increased the amount of reads utilized in the assembly by up to 109% compared to the base assembly. The additional contigs assembled by the Spherical workflow resulted in a significant (P < 0.05) changes in the predicted taxonomic profile of all datasets analysed. Spherical is implemented in Python 2.7 and freely available for use under the MIT license. Source code and documentation is hosted publically at: https://github.com/thh32/Spherical .
A Soluble Form of the High Affinity IgE Receptor, Fc-Epsilon-RI, Circulates in Human Serum (2011)

Soluble IgE receptors are potential in vivo modulators of IgE-mediated immune responses and are thus important for our basic understanding of allergic responses. We here characterize a novel soluble version of the IgE-binding alpha-chain of Fc-epsilon-RI (sFcεRI), the high affinity receptor for IgE. sFcεRI immunoprecipitates as a protein of ∼40 kDa and contains an intact IgE-binding site. In human serum, sFcεRI is found as a soluble free IgE receptor as well as a complex with IgE. Using a newly established ELISA, we show that serum sFcεRI levels correlate with serum IgE in patients with elevated IgE. We also show that serum of individuals with normal IgE levels can be found to contain high levels of sFcεRI. After IgE-antigen-mediated crosslinking of surface FcεRI, we detect sFcεRI in the exosome-depleted, soluble fraction of cell culture supernatants. We further show that sFcεRI can block binding of IgE to FcεRI expressed at the cell surface. In summary, we here describe the alpha-chain of FcεRI as a circulating soluble IgE receptor isoform in human serum.
Pathology of Natural Cases of Equine Endocrinopathic Laminitis Associated With Hyperinsulinemia (2014)

Laminitis in equids is a clinical syndrome usually associated with systemic disease. Endocrinopathies recently have been recognized as the most common cause of laminitis, with hyperinsulinemia playing a key role. Descriptions of laminitis-associated lesions have been confusing due to the wide range of experimental models used, failure of adequate clinical documentation for naturally occurring cases, lack of separate analysis of inflammatory and endocrinopathic laminitis, and uncertainty regarding normal morphological variation of lamellae. In this study, lamellar morphology and pathology were described in 14 laminitic horses and ponies that had hyperinsulinemia (>20 mIU/l), with reference to 25 age- and breed-matched controls. The type and severity of lesions noted had no correlation with reported clinical duration and in at least some cases must have preceded it. Lesions were largely localized abaxially within the lamellar tissue and included apoptotic cell death, as well as lamellar fusion, hyperplasia, and partial replacement with aberrant keratin containing nucleated debris and proteinaceous lakes. The lesions resulted in irregular margins between the inner horn and the lamellar tissue. Acute separation originated from the abaxial region, with minimal associated inflammation. Axially, epidermal lamellar tapering was the most frequent morphological observation. The lesions in these chronic cases of laminitis were similar to those described in some inflammatory laminitis models and contained features seen in developmental phases of hyperinsulinemic models. These findings support the theory that repeated episodes of subclinical laminitis occur prior to clinical presentation. In addition, the pathology does not include extensive basement membrane failure seen in some inflammatory models.
Abstract 3735: Detection of microsatellite instable colorectal cancers from routine NGS panel sequencing data (2017)

Abstract Introduction In about 15% of all colorectal cancers, microsatellite instability (MSI) caused by defects in the DNA mismatch repair machinery can be detected. MSI driven tumors have a better prognosis compared to microsatellite stable (MSS) tumors and show good response to drugs targeting the PD-1-PD-L1 axis. Current molecular diagnostic procedures for colorectal cancer are primarily focused on the detection of oncogenic mutations in RAS family genes by either classical Sanger sequencing or next-generation sequencing. Routine testingof MSI status for therapeutic purposes is still rare and usually carried out by a different array of methods including PCR and immunohistochemistry. Experimental procedures In our routine diagnostic CRC screening, we sequenced more than 600 colorectal tumors with an entity specific customized 180 amplicon NGS panel encompassing HotSpot regions of 31 genes. This panel includes several homopolymeric regions of genes that are known to be affected by MSI. We retrospectively analysed this data set for MSI signatures, including deletion/insertion mutations in 20 different homopolymeric regions (&gt;7) and mutations/deletions of MLH1, MSH3, MSH6 and TGFBR2. Cases with an MSI signature detected by panel sequencing were reevaluated by PCR-based screening (Bethesda panel). Results From the 20 homopolymeric regions analyzed, several loci showed deletion/insertion mutations in MSI-positive patients. The highest discriminatory power presented a homopolymeric region within the ACVR2A gene showing a high analytical sensitivity and specificity towards MSI prediction. In combination with the readout of additional homopolymeric regions and the mutation status of MLH1, MSH3, MSH6 and TGFBR2, a sensitive and specific detection algorithm for MSI can be obtained from routine panel sequencing data. In conclusion, using only one assay, this approach facilitates simultaneous detection of mutations in RAS genes (and other druggable targets) and the MSI status in CRC As the assay is tissue sparing and time saving it may be advantageous over classic test approaches that are currently being employed in routine diagnostics. Note: This abstract was not presented at the meeting. Citation Format: Volker Endris, Martina Kirchner, Matthias Kloor, Anna-Lena Volckmar, Magnus von Knebel Doeberitz, Roland Penzel, Peter Schirmacher, Albrecht Stenzinger. Detection of microsatellite instable colorectal cancers from routine NGS panel sequencing data [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017; 2017 Apr 1-5; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2017;77(13 Suppl):Abstract nr 3735. doi:10.1158/1538-7445.AM2017-3735
Optical Computing (1985)

High data rate optical computing is a major emerging technology, driven by an ever-increasing need for the processing of information. The current volume of technical literature on this subject attests to its new prominence as a computing technology complementary to digital electronic computers. The papers in this special issue of Optical Engineering, together with those published in a recent IEEE Proceedings (July 1984), represent a comprehensive cross section of current research interests in optical computing.
Sexual Behaviour of Commercial Sex Workers and Their Clients in Cambodia (1999)

It is very important to support both commercial sex workers in practicing preventive methods against STDs and also visiting physicians when they notice symptoms of STDs. It is strongly recommended that not only governmental but also non-governmental organisations should be more active in this area.
Study on causes and prevention of electrostatic charge build-up during extracorporeal circulation (1999)

For many years it has been known that roller pumps interfere regularly with the electrocardiogram (ECG) signal. This electrical activity is also considered responsible for the electrostatic charge build-up in some oxygenators with a plastic heat exchanger. During use of such an oxygenator, an electrical shock can be felt when touching the device. In the absence of a provoked discharge, a spontaneous discharge may occur. The construction of the heat exchanger and the use of nonconductive materials enable some devices to function as a capacitor. If the voltage difference across the fibre wall is too high, an electrostatic discharge may occur. In 1997, four blood-to-water leaks in Maxima Forté oxygenators were reported on a worldwide basis. After thorough research by Medtronic Cardiac Surgery (Cardiopulmonary Division), the cause of the leaks was found to be an electrothermal event across the fibre wall of one single fibre. No patient injuries were reported in any of the events. Medtronic patented a number of US Food and Drug Administration-approved and patient-safe solutions to prevent this electrostatic charge build-up. We studied the electrostatic phenomenon in order to clarify the clinical aspects. The in vitro part of the study is related to the behaviour of the Medtronic Biopump and the Stockert Shiley roller pump--in combination with the use of a PVC or silicone pumpheader. Subsequently, we have investigated the influence of the rotation or flow of both types of blood pumps and occlusion settings on the roller pump. Furthermore, we tried to capture the electrical charge generated by the roller pumps in a capacitor and in some oxygenators with different types of heat exchanger. Finally, we tested the external CEL (Charge Equalization Line) and the internal 'Gold Wire' charge equalization systems, both patented by Medtronic. In the in vivo part of the study, 15 patients were divided into three groups of five patients each. In the first group a roller pump with a PVC pumpheader was evaluated and, in the second group, a roller pump with a silicone pumpheader. The third group consisted of the Medtronic Biopump. In all the groups, a Maxima Forté oxygenator with the external CEL protection was used. Owing to the fact that, at the time, the Maxima Forté 'Gold Wire' oxygenator was not available for clinical use, only the external CEL could be evaluated.
Functional Antibody Immobilization on 3-Dimensional Polymeric Surfaces Generated by Reactive Ion Etching (2005)

Reactive ion etching (RIE) was used to pattern antibodies onto the surfaces of polymer substrates. A low pressure, inductively coupled oxygen plasma was used to anisotropically etch 25-30 mum deep features into poly(methyl methacrylate) (PMMA), Zeonex, and polycarbonate (PC). Scanning electron microscopy and contact angle measurements show that the resulting surfaces exhibit significant microroughness and enhanced hydrophilicity. Fourier transform infrared spectroscopy suggests that, in addition to enhanced surface area, chemical modifications may contribute to antibody immobilization. Polyclonal antibodies preferentially bind to the etched areas in RIE-patterned PMMA and Zeonex substrates but localize in unetched regions of RIE-patterned PC surfaces. Simple immunoassays were performed to demonstrate a potential application for RIE-modified polymer surfaces. Antibodies specific for the capture of fluorescently labeled cholera toxin, S. aureus enterotoxin B, and B. anthracis protective antigen were immobilized onto etched PMMA surfaces and shown to specifically capture their labeled antigen from solution. This work demonstrates a potentially useful fabrication methodology for constructing antibody microarrays on plastic substrates.
Sick individuals and sick populations (2001)

Rose G (Department of Epidemiology, London School of Hygiene and Tropical Medicine, Keppel Street, London WC1E 7HT, UK). Sick individuals and sick populations. International Journal of Epidemiology 1985;14:32--38. Aetiology confronts two distinct issues: the determinants of individual cases, and the determinants of incidence rate. If exposure to a necessary agent is homogeneous within a population, then case/control and cohort methods will fail to detect it: they will only identify markers of susceptibility. The corresponding strategies in control are the 'high-risk' approach, which seeks to protect susceptible individuals, and the population approach, which seeks to control the causes of incidence. The two approaches are not usually in competition, but the prior concern should always be to discover and control the causes of incidence.