gebhart/patrepeval huggingface dataset:
Progesterone/RANKL Is a Major Regulatory Axis in the Human Breast (2013)

Estrogens and progesterones are major drivers of breast development but also promote carcinogenesis in this organ. Yet, their respective roles and the mechanisms underlying their action in the human breast are unclear. Receptor activator of nuclear factor κB ligand (RANKL) has been identified as a pivotal paracrine mediator of progesterone function in mouse mammary gland development and mammary carcinogenesis. Whether the factor has the same role in humans is of clinical interest because an inhibitor for RANKL, denosumab, is already used for the treatment of bone disease and might benefit breast cancer patients. We show that progesterone receptor (PR) signaling failed to induce RANKL in PR(+) breast cancer cell lines and in dissociated, cultured breast epithelial cells. In clinical specimens from healthy donors and intact breast tissue microstructures, hormone response was maintained and RANKL expression was under progesterone control, which increased RNA stability. RANKL was sufficient to trigger cell proliferation and was required for progesterone-induced proliferation. The findings were validated in vivo where RANKL protein expression in the breast epithelium correlated with serum progesterone levels and the protein was expressed in a subset of luminal cells that express PR. Thus, important hormonal control mechanisms are conserved across species, making RANKL a potential target in breast cancer treatment and prevention.
A Novel No-Reference PSNR Estimation Method With Regard to Deblocking Filtering Effect in H.264/AVC Bitstreams (2013)

Peak signal-to-noise ratio (PSNR) monitoring is an important application for video quality assessment of video systems at the receiver sides where no-reference PSNR estimation is essential. Most of the PSNR estimation methods for H.264/AVC bitstreams ignore or do not consider the effect of deblocking filtering. Instead, they only focus on estimating the mean squared error (MSE) due to quantization. However, the PSNR estimation affected by deblocking filtering cannot be negligible for sequences of large picture resolutions. In this paper, we first present an MSE estimation method on H.264/AVC bitstreams by considering the deblocking filtering effect so that more accurate PSNR estimation can be made. For this, the total MSE between the original and reconstructed frames is separated into two terms for PSNR estimation: one due to quantization error and the other due to the deblocking filtering effect in H.264/AVC. In the proposed PSNR estimation, the contribution of deblocking filtering to the total MSE is quantified by a compensation factor of each encoded picture type between the original and the deblocked frames. Experimental results show that the proposed method effectively reflects the contribution of deblocking filtering to PSNR estimation, thus yielding more accurate PSNR estimates.
Synthesis and Characterization of Lipophilic 1-(18F)Fluoroalkyl-2-nitroimidazoles for Imaging Hypoxia. (1999)

In order to develop new imaging markers for brain hypoxia, two lipophilic nitroimidazoles, 1-(3-fluoropropyl)-2-nitroimidazole (FPN) and 1-(8-fluorooctyl)-2-nitroimidazole (FON) were synthesized and labeled with fluorine-18. The octanol/water partition coefficients were measured as an indication of lipophilicity, giving values of logP=0.28 for FPN and logP=2.72 for FON, respectively, which are in the range thought to be optimal for the diffusion of molecules across the blood-brain barrier. It was suggested from a comparative study of in vitro radiosensitization in V79 cells that these lipophilic analogs may have reduction potentials close to those of fluoromisonidazole (FMISO) and misonidazole (MISO), known hypoxic cell radiosensitizers. The preparation of 18F-labeled FON (18FON) and FPN (18FPN) was achieved via two-steps through [18F]fluoride ion displacement of tosylate precursors, in reasonable radiochemical yields. Tissue distribution of 18FPN and 18FON in normal rats and tumor-bearing mice after intravenous injection was investigated and compared to the behavior of 18F-labeled FMISO (18FMISO), a proven hypoxic imaging agent. The high lipophilicity of 18FON and 18FPN resulted in increased initial uptake into normal rat brain, relative to 18FMISO, followed by a rapid washout from brain. Both of these lipophilic analogs had significantly lower tumor uptake and lower tumor-to-blood ratios than 18FMISO, suggestive of a poor trapping mechanism within the tumor tissue. Neither 18FON or 18FPN offers improved biological properties over 18FMISO as a potential agent for use in brain hypoxic imaging.
Spatially‐localized NMR spectroscopy employing an inhomogeneous surface‐spoiling magnetic field gradient 2. Surface coil experiments with multicompartment phantom and rat <i>in vivo</i> (1990)

The use of inhomogeneous surface-spoiling magnetic field gradients for elimination of signal from surface lying regions of a sample was theoretically examined in the companion article (W. Chen and J.J.H. Ackerman, NMR Biomed. 3, 147-157 (1990)). Using the spoiling gradient coil design described therein, this article presents experimental verification of the feasibility of such an approach to enhanced spatial localization. Single coil mode 31P NMR surface coil interrogation of both a two compartment phantom and rat in vivo are shown to provide excellent suppression of surface lying regions with minimal degradation of signal from the deep lying region of interest. Both pulse-and-collect and spin echo sequences were highly efficient in concert with spoiling gradient periods of 0.5-2 ms and driving currents of 0.5-2 A. The use of a current-generated surface spoiling gradient offers a robust means to remove surface tissue signal contributions and can be implemented with a wide range of localizing pulse sequences and imaging protocols.
Linewidth Control In X-Ray Lithography: The Influence Of The Penumbral Shadow (1984)

The penumbral shadow has been recognized as the resolution- limiting parameter in x-ray lithography. In the present study, the exposure of resist with monochromatic (2.84 keV) x-rays and an experimental palladium spectrum is simulated for various values of the penumbral shadow. Two mask structures with an absorber wall angle of 0 and 17 degrees and an absorber thickness of 1 um are compared. The effects of the penumbra and the finite absorber thickness on line acuity, linewidth control and uniformity are demonstrated. The simulation is compared to electrical linewidth measurements of resistors fabricated in 300 nm poly-silicon films. Negative acting resist was patterned with palladium radiation at a penumbra of 0.3 um through a boron nitride supported gold absorber mask with a thickness of about 0.8 um. The data indicate that the experimental linewidth control is considerably smaller than calculated, especially for small x-ray doses.
Development of a hydrogen-oxygen internal combustion engine space power system (1965)

The Saccharomyces cerevisiae RNA-binding protein Nab4/Hrp1 is a component of the cleavage factor complex required for 3' pre-mRNA processing. Although the precise role of Nab4/Hrp1 remains unclear, it has been implicated in correct positioning of the cleavage site in vitro. Here, we show that mutation or overexpression of NAB4/HRP1 alters polyA cleavage site selection in vivo. Using bioinformatic analysis, we identified four related motifs that are statistically enriched in Nab4-associated transcripts; each motif is similar to the known binding site for Nab4/Hrp1. Site-directed mutations in predicted Nab4/Hrp1 binding elements result in decreased use of adjacent cleavage sites. Additionally, we show that the nab4-7 mutant displays a striking resistance to toxicity from excess copper. We identify a novel target of alternative 3' pre-mRNA processing, CTR2, and demonstrate that CTR2 is required for the copper resistance phenotype in the nab4-7 strain. We propose that alternative 3' pre-mRNA processing is mediated by a Nab4-based mechanism and that these alternative processing events could help control gene expression as part of a physiological response in S. cerevisiae.
What Are Batteries, Fuel Cells, and Supercapacitors? (2004)

Abstract For Abstract see ChemInform Abstract in Full Text.
Selective Activation of mGlu4 Metabotropic Glutamate Receptors Is Protective against Excitotoxic Neuronal Death (2000)

Activation of group III metabotropic glutamate receptors (mGluR4, mGluR6, mGluR7, and mGluR8) has been established to be neuroprotective in vitro and in vivo. To disclose the identity of the receptor subtype(s) that exert(s) the protective effect, we have used group III agonists in combination with mGluR4 subtype-deficient mice (-/-). In cortical cultures prepared from wild-type (+/+) mice and exposed to a toxic pulse of NMDA, the selective group III agonist (+)-4-phosphonophenylglycine [(+)-PPG] reversed excitotoxicity with an EC(50) value of 4.9 microm, whereas its enantiomer (-)-PPG was inactive. This correlated closely with the potency of (+)-PPG in activating recombinant mGluR4a. In cortical neurons from -/- mice, (+)-PPG showed no protection against the NMDA insult up to 300 microm, whereas group I/II mGluR ligands still retained their protective activity. Classical group III agonists (l-2-amino-4-phosphonobutyrate and l-serine-O-phosphate) were also substantially neuroprotective against NMDA toxicity in +/+ and heterozygous (+/-) cultures but were inactive in -/- cultures. Interestingly, -/- cultures were more vulnerable to low concentrations of NMDA and showed higher extracellular glutamate levels compared with +/+ cultures. We have also examined neurodegeneration induced by intrastriatal infusion of NMDA in wild-type or mGluR4-deficient mice. Low doses of (R,S)-PPG (10 nmol/0.5 microl) substantially reduced NMDA toxicity in +/+ mice but were ineffective in -/- mice. Higher doses of (R,S)-PPG were neuroprotective in both strains of animals. Finally, microdialysis studies showed that intrastriatal infusion of NMDA increased extracellular glutamate levels to a greater extent in -/- than in +/+ mice, supporting the hypothesis that the mGluR4 subtype is necessary for the maintenance of the homeostasis of extracellular glutamate levels.
Characterization of a variant strain of Norwalk virus from a food-borne outbreak of gastroenteritis on a cruise ship in Hawaii (1994)

A gastroenteritis outbreak affecting at least 217 (41%) of 527 passengers on a cruise ship was caused by a variant strain of Norwalk virus (NV) that is related to but distinct from the prototype NV strain. Consumption of fresh-cut fruit served at two buffets was significantly associated with illness (P < or = 0.01), and a significant dose-response relationship was evident between illness and the number of various fresh-cut fruit items eaten. Seven (58%) of 12 paired serum specimens from ill persons demonstrated at least fourfold rises in antibody response to recombinant NV capsid antigen. A 32-nm small round-structured virus was visualized by electron microscopy in 4 (29%) of 14 fecal specimens, but none of the 8 specimens that were examined by an enzyme immunoassay for NV antigen demonstrated antigen. Four (40%) of 10 fecal specimens were positive by reverse transcriptase-PCR by using primer pairs selected from the polymerase region of NV. In a 145-bp region, the PCR product shared only 72% nucleotide sequence identity with the reference NV strain and 77% nucleotide sequence identity with Southampton virus but shared 95% nucleotide sequence identity with UK2 virus, a United Kingdom reference virus strain. In addition, the outbreak virus was serotyped as UK2 virus by solid-phase immune electron microscopy. The genetic and antigenic divergence of the outbreak strain from the reference NV strain highlights the need for more broadly reactive diagnostic assays and for improved understanding of the relatedness of the NV group of agents.
A Subband Based Spatio-temporal Noise Reduction Technique For Interlaced Video Signals (1998)

The reduction of gaussian noise is still an important task in video systems. The presented scheme consists mainly of a subband based recursive temporal filter adapted to special properties of the human visual system. This filter is supported by a spatial filter with low hardware expense, which consists of an image analysing highpass filter bank and an adaptive lowpass FIR-filter for noise reduction.
Los manuscritos del Mar Muerto y el Nuevo Testamento (2010)

Jesus, the Galilean Teacher, who spoke Aramaic and taught like the Jewish teachers of his day, was an Essene, even to the point of being the Teacher of Righteousness restored to life? Several authors tried to emphasize, each in his own way, the importance of the manuscripts: some to understand the fictitious Jesus of the Gospels as an adaptation of the Master of Justice; leaving aside the basic data, they identify key words thanks to a very particular use of the Qumranite pešer genre: John the Baptist = the Teacher of Justice, Jesus = the wicked Teacher, Qumran = Jerusalem, etc. Others, to establish a New Age philosophy or religion devoted to esotericism, etc. Finally, after 60 years of investigations, what revelations do these manuscripts hold on the birth of Christianity?
Antinociceptive effects of gabapentin & its mechanism of action in experimental animal studies. (2012)

Our findings indicate that arachidonate, nitrergic and serotonergic systems play an important role in the antinociceptive activity of gabapentin except for the opioidergic system. Additionally, this effect occured centrally and peripherally. These effects were also mediated by nNOS and PGE2.
<i>Trichoderma reesei</i>: genetic approaches to improving strain efficiency (2010)

For cost-effective, economically competitive production of bioethanol from cellulosic plant matter improvements in the production of enzymes to depolymerize the plant biomass are necessary. The fungus Trichoderma reesei is a prolific producer of cellulases and hemicellulases, and intensive research efforts are ongoing to further increase strain efficiency by maximizing enzyme production levels and optimizing the produced enzyme cocktail. With the genome sequencing of T. reesei QM6a cellulase research has entered a new era. Whole-genome comparisons of hyperproducing strains provide new insights into the mechanisms relevant for cellulase gene expression. The recent discovery that this fungus is also susceptible to sexual crossing opens new possibilities for strain improvement by combining beneficial properties or crossing out deleterious ones. In this review we outline new strategies, tools and recent developments based on genomic and proteomic approaches that are now available to gain better insights into the cellulolytic enzyme machinery of T. reesei.
Identifying and utilizing the ischemic penumbra (2012)

The penumbral concept is defined as different areas within the ischemic region evolve into irreversible brain injury over time and that this evolution is most critically linked to the severity of the decline in cerebral blood flow (CBF). The ischemic penumbra was initially defined as a region of reduced CBF with absent spontaneous or induced electrical potentials that still maintained ionic homeostasis and transmembrane electrical potentials. The reduction of CBF levels to between 10 and 15 mL/100 g/min and approximately 25 mL/100 g/min are likely to identify penumbral tissue, and the ischemic core of irreversible ischemic tissue has a CBF value below the lower threshold. The role of identifying this critically deprived brain tissue from CBF in triaging patients for endovascular ischemic therapy is evolving. In this review we focus on the basic science of the penumbral concept and identification using various imaging modalities (PET, MRI, and CT) in animal models and human studies. Another article in this supplement addresses the clinical implication and the current understanding and application of this concept into clinical practice of endovascular ischemic stroke therapy.
Loss compensation in metal-dielectric layered metamaterials (2013)

We analyze a possibility of gain-induced compensation of losses in a one-dimensional layered structure, consisting of alternating layers of metal and dielectric with gain. Using an exact approach without effective medium approximations, we demonstrate that losses can be completely compensated for a certain value of the longitudinal component of the wave vector and partially reduced for other wave numbers. In the systems with larger values of the gain coefficient, convective instabilities can appear. At certain frequencies, losses can be greatly reduced for a broad range of the incidence angles. We find that in the canalization regime when the isofrequency contours are close to straight lines, the loss compensation becomes possible for a wide spatial spectrum being useful for improvement of the subwavelength imaging capability.
Neural progenitor cells transplanted into the uninjured brain undergo targeted migration after stroke onset (2007)

Endogenous neural stem cells normally reside in their niche, the subventricular zone, in the uninjured rodent brain. Upon stroke, these cells become more proliferative and migrate away from the subventricular zone into the surrounding parenchyma. It is not known whether this stroke-induced behavior is due to changes in the niche or introduction of attractive cues in the infarct zone, or both. A related question is how transplanted neural stem cells respond to subsequent insults, including whether exogenous stem cells have the plasticity to respond to subsequent injuries after engraftment. We addressed this issue by transplanting neural progenitor cells (NPCs) into the uninjured brain and then subjecting the animal to stroke. We were able to follow the transplanted NPCs in vivo by labeling them with superparamagnetic iron oxide particles and imaging them via high-resolution magnetic resonance imaging (MRI) during engraftment and subsequent to stroke. We find that transplanted NPCs that are latent can be activated in response to stroke and exhibit directional migration into the parenchyma, similar to endogenous neural NPCs, without a niche environment.
Wetting Alteration of Solid Surfaces by Crude Oils and Their Asphaltenes (1998)

Crude oils contain a variety of components - including asphaltenes - that can adsorb onto mineral surfaces and alter wetting. What distinguishes the asphaltenes from other constituents of an oil is their tendency to aggregate and even separate from the oil in response to changes in oil solvency. Because they change in size, asphaltenes can be viewed as both macromolecules and colloids. Their influence on wettability can change with this shift from molecular to colloidal regimes. As macromolecules, asphaltenes and other crude oil components with polar functionality can adsorb on mineral surfaces. Many different crude oils have been shown to have similar effects on wetting of dry silicate surfaces. When water is present, however, the results of exposing surfaces to different oils can be quite complex, depending on the distribution of water, the compositions of oil and brine, and mineralogy of rock surfaces. Acid and base numbers and the relationship between them provide a measure of the potential for a particular oil to alter wetting through ionic interactions. As colloids, asphaltenes can alter wetting by an additional mechanism. Near the onset of precipitation, wetting alteration occurs by surface precipitation because of the interfacial aggregation of the colloidal asphaltenes, which can precede flocculation in bulk. The influence of asphaltenes on wetting is thus strongly dependent on the environment in which they are found. Mixture refractive index is a useful measure for quantifying the stability of asphaltenes in a crude oil and thus in differentiating between macromolecular and colloidal contributions of asphaltenes to wetting alteration.
Altered Activity of Palmitoylation-deficient and Isoprenylated Forms of the G Protein-coupled Receptor Kinase GRK6 (1997)

G protein-coupled receptor kinases (GRKs) utilize diverse mechanisms to associate with the plasma membrane and mediate phosphorylation of agonist-occupied receptors. For example, two members of this family, GRK4 and GRK6, contain C-terminal cysteine residues that are palmitoylated. To address whether the activity and membrane association of GRK6 is regulated by palmitoylation, we overexpressed and characterized wild-type GRK6 and two GRK6 mutants, one with the palmitoylation sites mutated to serines (GRK6-pal-) and one containing a C-terminal CAAX motif to promote geranylgeranylation (GRK6-GG). Compared with wild-type GRK6, GRK6-pal- had a approximately 5-fold higher Km and approximately 2-fold lower Vmax for phosphorylating rhodopsin, whereas GRK6-GG exhibited a approximately 2-fold lower Km and approximately 14-fold higher Vmax for rhodopsin. In contrast, wild-type GRK6 and GRK6-pal- displayed similar activity toward the nonreceptor substrate phosvitin, indicating that nonpalmitoylated GRK6 is catalytically active. Wild-type GRK6 and GRK6-GG, but not GRK6-pal-, also bound significantly to phosphatidylcholine vesicles (36 +/- 3, 79 +/- 4, and 4 +/- 2%, respectively) suggesting that GRK6 activity is dependent upon its ability to interact with the plasma membrane. When assayed in COS-1 cells GRK6-pal- promoted minimal agonist-dependent sequestration of the beta2-adrenergic receptor, while sequestration was significantly increased in cells expressing either wild-type GRK6 or GRK6-GG. These data demonstrate an important functional link between the ability of GRK6 to bind to the plasma membrane, a process that appears to be regulated by palmitoylation, and its activity toward receptor substrates.
STUDIES ON THE EFFECTS OF NEODYMIUM ON THE THYLAKOID PROTEIN-COMPLEX OF PLANT (1995)

The element of rare earth一Neodymium has an effect on the protein一complex in chloroplast 一thylakoid of plant，which not only show on thevariation of thylakoid一solution's absorption一 spectrogram，but also on the variation of absorption一peak area with SDS一PAGE electrophoresis一scaning map. At the same time，this effect can also be represented by activating the Ca~(2+)一ATPase at its low concentration while inhibiting it at high concentration，and Lihibiting the activity of DCPIP photoreduction
Chronic administration of an HDAC inhibitor treats both neurological and systemic Niemann-Pick type C disease in a mouse model (2016)

Histone deacetylase inhibitors (HDACi) are approved for treating rare cancers and are of interest as potential therapies for neurodegenerative disorders. We evaluated a triple combination formulation (TCF) comprising the pan-HDACi vorinostat, the caging agent 2-hydroxypropyl-β-cyclodextrin (HPBCD), and polyethylene glycol (PEG) for treating a mouse model (the Npc1(nmf164) mouse) of Niemann-Pick type C (NPC) disease, a difficult-to-treat cerebellar disorder. Vorinostat alone showed activity in cultured primary cells derived from Npc1(nmf164) mice but did not improve animal survival. However, low-dose, once-weekly intraperitoneal injections of the TCF containing vorinostat increased histone acetylation in the mouse brain, preserved neurites and Purkinje cells, delayed symptoms of neurodegeneration, and extended mouse life span from 4 to almost 9 months. We demonstrate that the TCF boosted the ability of HDACi to cross the blood-brain barrier and was not toxic even when used long term. Further, the TCF enabled dose reduction, which has been a major challenge in HDACi therapy. TCF simultaneously treats neurodegenerative and systemic symptoms of Niemann-Pick type C disease in a mouse model.