gebhart/patrepeval huggingface dataset:
EGF and PDGF Receptor Tyrosine Kinases as Therapeutic Targets for Chronic Lung Diseases (2006)

Cell-surface receptor tyrosine kinases play pivotal roles in development, tissue repair, and normal cellular homeostasis. Aberrant expression or signaling patterns of these kinases has also been linked to the progression of a diversity of diseases, including cancer, atherosclerosis, asthma, and fibrosis. Two major families of receptor tyrosine kinases, the epidermal growth factor receptor (EGFR) and platelet-derived growth factor receptor (PDGFR) families, have received a great deal of attention as potential therapeutic targets for pulmonary diseases, as these receptors have been shown to play key roles in chronic tissue remodeling in asthma, bronchitis, and pulmonary fibrosis. The EGFR system on epithelial cells and underlying mesenchymal cells (fibroblasts, myofibroblasts, and smooth muscle cells) drives numerous phenotypic changes during the progression of these pulmonary diseases, including epithelial cell mucous cell metaplasia and mesenchymal cell hyperplasia, differentiation, and extracellular matrix production. The PDGFR system, located primarily on mesenchymal cells, transduces signals for cell survival, growth and chemotaxis. The variety of EGFR and PDGFR ligands produced by the airway epithelium or adjacent mesenchymal cells allows for intimate epithelial-mesenchymal cell communication. A full understanding of the complex mechanisms involving these receptors and ligands should lead to therapeutic strategies for the treatment of a wide range of fibroproliferative lung diseases.
Stem Cells 201: An Overview of the Ethics of Stem Cell Research (2005)

championed by scientists as the key to curing such diseases as Parkinson’s and Alzheimer’s, reducing the neurological devastation of stroke and spinal cord injury, and eradicating juvenile diabetes, among many others. However, controversy surrounding the practice of using embryos for research purposes has kept government funding of stem cell research from being a foregone conclusion. The ethical decisions that drive policy tend to initially hang on the question of the moral status of an embryo. Views on the moral ramifications of harvesting embryos for research purposes are wide ranging and tend to be informed by theology and social ideology. Does the embryo have the same rights as a person? Groups who believe that the embryo has the same rights as a child or an adult argue that the destruction of embryos is morally wrong and that the use of embryos in research is unjustified no matter how great the potential therapeutic benefit of stem cell research. However, there are other groups that view the embryo as a form of human life that, while worthy of respect, is not the moral equivalent of a person. Once the embryo is granted an intermediate moral status that allows its destruction for the attainment of a greater good, the ethical discussion then shifts to the moral parameters of stem cell research. How does one proceed with stem cell research in an ethical manner? Questions of research protocol, acceptable sources of embryos for stem cells, and the just allocation of the fruits of stem cell research take on more weight as the ethicists and policy makers strive to balance the potential moral good of curing disease and alleviating human suffering with the potential moral pitfalls of destroying one form of human life to benefit another. Should one proceed with stem cell research at all? There are some in the disability community who feel that the funding of stem cell research in the name of eradicating disability would be a misappropriation of federal funding. When so many people live with disabilities every day and lack federal funding or political support for programs that would increase quality of life now, many feel that it would be unconscionable to focus on a cure to the exclusion of all else.
Construction of a Vertebrate Embryo from Two Opposing Morphogen Gradients (2014)

Development of vertebrate embryos involves tightly regulated molecular and cellular processes that progressively instruct proliferating embryonic cells about their identity and behavior. Whereas numerous gene activities have been found to be essential during early embryogenesis, little is known about the minimal conditions and factors that would be sufficient to instruct pluripotent cells to organize the embryo. Here, we show that opposing gradients of bone morphogenetic protein (BMP) and Nodal, two transforming growth factor family members that act as morphogens, are sufficient to induce molecular and cellular mechanisms required to organize, in vivo or in vitro, uncommitted cells of the zebrafish blastula animal pole into a well-developed embryo.
Compressed-domain temporal adaptation-resilient watermarking for H.264 video authentication (2009)

In this paper, we present a DCT domain watermarking approach for H.264/AVC video coding standard. This scheme is resilient to compressed-domain temporal adaptation. A cryptographic hash function is used to generate a semi-fragile watermark to provide content-based authentication. The embedded watermark can withstand frame-dropping due to temporal adaptation, yet it is able to detect malicious attacks such as content modification, transcoding etc. Simulation results demonstrate that the watermarking scheme is computationally efficient and suitable for practical use.
Biosynthesis of Callose and Cellulose by Detergent Extracts of Tobacco Cell Membranes and Quantification of the Polymers Synthesized <i>in vitro</i> (2010)

The conditions that favor the in vitro synthesis of cellulose from tobacco BY-2 cell extracts were determined. The procedure leading to the highest yield of cellulose consisted of incubating digitonin extracts of membranes from 11-day-old tobacco BY-2 cells in the presence of 1 mM UDP-glucose, 8 mM Ca(2+) and 8 mM Mg(2+). Under these conditions, up to nearly 40% of the polysaccharides synthesized in vitro corresponded to cellulose, the other polymer synthesized being callose. Transmission electron microscopy analysis revealed the occurrence of two types of structures in the synthetic reactions. The first type consisted of small aggregates with a diameter between 3 and 5 nm that associated to form fibrillar strings of a maximum length of 400 nm. These structures were sensitive to the acetic/nitric acid treatment of Updegraff and corresponded to callose. The second type of structures was resistant to the Updegraff reagent and corresponded to straight cellulose microfibrils of 2-3 nm in diameter and 200 nm to up to 5 microm in length. In vitro reactions performed on electron microscopy grids indicated that the minimal rate of microfibril elongation in vitro is 120 nm/min. Measurements of retardance by liquid crystal polarization microscopy as a function of time showed that small groups of microfibrils increased in retardance by up to 0.047 nm/min per pixel, confirming the formation of organized structures.
Bis(Hydroxamamide)-Based Bifunctional Chelating Agent for <sup>99m</sup>Tc Labeling of Polypeptides (1998)

To develop chelating molecules that provide 99mTc-labeled polypeptides of high in vivo stability and high specific activities under mild reaction conditions, an asymmetrical bis(benzohydroxamamide) compound with an amine group, 4'-aminomethyl-N,N'-trimethylenedibenzohydroxamamide [NH2-C3(BHam)2], was designed and synthesized. The amine residue of NH2-C3(BHam)2 was converted to a maleimide group by reaction with N-succinimidyl-6-maleimidohexanoate, and the conjugation product was coupled to thiol groups of a monoclonal antibody against osteogenic sarcoma (OST7, IgG1) pretreated with 2-iminothiolane to prepare C3(BHam)2-OST7. 99mTc radiolabeling of C3(BHam)2-OST7 was performed by the exchange reaction with [99mTc]glucoheptonate. [99mTc]C3(BHam)2-OST7 was further characterized using directly radioiodinated OST7 ([125I]OST7) and [111In]labeled OST7 with 1-[4-[(5-maleimidopentyl)amidobenzyl]ethylenediamine-N,N, N'N'-tetraacetic acid (EMCS-Bz-EDTA) as references. [99mTc]C3(BHam)2-OST7 was obtained with radiochemical yields of over 94% at protein concentrations as low as 0.2 mg/mL at room temperature for 1 h. [99mTc]C3(BHam)2-OST7 remained stable after incubation in freshly prepared murine plasma and in the presence of cysteine. Similar binding affinities to tumor cells were observed between [99mTc]C3(BHam)2-OST7 and [125I]OST7. When injected into normal mice, [99mTc]C3(BHam)2-OST7 exhibited radioactivity levels in the blood similar to [111In]-EMCS-Bz-EDTA-OST7 up to 24 h postinjection with significantly faster elimination rate of the radioactivity from the liver. In nude mice bearing osteogenic sarcoma, no significant differences were observed in the radioactivity levels in the blood and the tumor between [99mTc]C3(BHam)2-OST7 and [125I]OST7 at 24 h postinjection. These findings indicated that C3(BHam)2 provided 99mTc chelate of high stability at low concentrations even when conjugated to an intact antibody. Such characteristics render bis(hydroxamamide) compounds useful as chelating molecules for preparation of 99mTc-labeled polypeptides.
SpeedLog: a generic log service supporting efficient node-crash recovery (1994)

S.60-71
Coronary implantation of silicone-carbide-coated Palmaz-Schatz stents in patients with high risk of stent thrombosis without oral anticoagulation (1997)

Coronary stenting in bail-out situations is effective but associated with increased stent thrombosis and bleeding rates. Silicone-carbide coating reduces fibrinogen activation on alloplastic surfaces and thus may also reduce stent thromboses. A total of 44 patients received 58 silicone-carbide-coated stents for threatened (80%) or abrupt (20%) closure. In addition to heparin, patients were treated with aspirin and ticlopidine (75%) or aspirin (25%) only. Two patients (4.5%) died in the hospital. The combined in-hospital complication rate including death, emergency revascularization, stent-related myocardial infarction, and stent thrombosis was 9% (4 of 44 patients). Major bleeding occurred in 4 patients (9%). Six-month follow-up angiography was obtained in all eligible patients (42 of 44), revealing a restenosis rate of 21% (9 of 42). Thus, coronary implantation of silicone-carbide-coated stents is feasible in bail-out situations without oral anticoagulation and with a low complication rate. Further studies are required to optimize the anticoagulation regimen with this type of coating.
Regression Modeling for the Valuation of Large Variable Annuity Portfolios (2017)

Variable annuities are insurance products that contain complex guarantees. To manage the financial risks associated with these guarantees, insurance companies rely heavily on Monte Carlo simulation. However, using Monte Carlo simulation to calculate the fair market values of these guarantees for a large portfolio of variable annuities is extremely time consuming. In this article, we propose the class of GB2 distributions to model the fair market values of guarantees to capture the positive skewness typically observed empirically. Numerical results are used to demonstrate and evaluate the performance of the proposed model in terms of accuracy and speed.
Blood Compatibility—An Important but Often Forgotten Aspect of the Characterization of Antimicrobial Peptides for Clinical Application (2019)

Acylation of antimicrobial peptides mimics the structure of the natural lipopeptide polymyxin B, and increases antimicrobial and endotoxin-neutralizing activities. In this study, the antimicrobial properties of lactoferrin-based LF11 peptides as well as blood compatibility as a function of acyl chain length were investigated. Beyond the classical hemolysis test, the biocompatibility was determined with human leukocytes and platelets, and the influence of antimicrobial peptides (AMPs) on the plasmatic coagulation and the complement system was investigated. The results of this study show that the acylation of cationic peptides significantly reduces blood tolerance. With increasing acyl chain length, the cytotoxicity of LF11 peptides to human blood cells also increased. This study also shows that acylated cationic antimicrobial peptides are inactivated by the presence of heparin. In addition, it could be shown that the immobilization of LF11 peptides leads to a loss of their antimicrobial properties.
Traumatic Rupture of the Thoracic Aorta:Case Report (1971)

Two cases of traumatic rupture of the thoracic aorta are reported. Both were successfully treated by surgery. One of the patients, a 21-year-old man was operated on within 10 hours of the injury. In the other patient, a traumatic aneurysm was resected 8 months after the actual traffic accident. The surgical management of the lesion is discussed and the importance of early diagnosis and treatment is stressed.
Carrier-induced phase noise in angle-modulated optical-fiber systems (1984)

Phase noise in angle-modulated optical-fiber communication systems arising from optical power fluctuations is analyzed. The nonlinear refractive index of silica is the physical mechanism which converts power fluctuations into phase fluctuations. The effects of self-phase modulation (an optical wave acting on itself) and cross-phase modulation in wavelength-division multiplexed (WDM) systems (one optical wave modulating a channel at a different wavelength) have been calculated. The phase noise generated in single-channel systems is negligible for laser fluctuations less than 1-mW rms. In WDM systems containing as few as four channels the phase noise exceeds tolerable levels (0.15 rad) for power fluctuation of 1 mW in each channel.
In Vitro Permeability Evaluation and Colonization of Membranes for Periodontal Regeneration by <i>Porphyromonas gingivalis</i> (1996)

The use of membranes for periodontal regeneration is well established. In clinical use, the exposure of membranes to the oral microflora may result in a pathway for periodontal infections. An important role in this process is played by Porphyromonas gingivalis. The purpose of the present study was to examine the colonization of 6 different bioresorbable and nonresorbable membranes for periodontal regeneration by the strain DSM 20709 of P. gingivalis and to determine the time needed by this microorganism to pass through the membranes. A device consisting of a tube sealed with the membranes and filled with a medium suitable for the growth of P. gingivalis was incubated in a bigger tube containing the same medium to study the process of colonization and the crossing of membranes. The outer tube was inoculated with 10(4) cells of P. gingivalis DSM 20709. The passage of bacteria through the membranes was monitored at 6, 24, and 48 hours by counting the number of cells in the inner tube. The colonized membranes were observed using a scanning electron microscope. Differences in the behavior of the 6 membranes analyzed were demonstrated.
Computational Properties of Peri-Dendritic Calcium Fluctuations (1998)

Using a model of the extracellular space, we show how external calcium fluctuations, engendered during normal neural activity, can act as a rapid information-bearing signal in nervous systems. We demonstrate that action potentials propagating along a dendrite can induce large peri-dendritic calcium fluctuations, lowering significantly the external calcium available to overlying presynaptic terminals. The geometrical distribution of active calcium sinks critically influences the time and spatial extent of fluctuations in external calcium. In particular, clusters of coactive dendrites can prolong and amplify an external calcium fluctuation. This latter effect provides a natural substrate for a computational mechanism that locates specific volumes of neural tissue on rapid time scales. Such an interpretation suggests that the detailed structure of the extracellular space, in combination with the three-dimensional distribution of active calcium sinks, may play a role in neural information processing.
Cell-level path allocation in a three-stage ATM switch (2002)

A method of cell-level path allocation for three-stage ATM switches has previously been proposed by the authors. The performance of ATM switches using this path allocation algorithm has been evaluated by simulation, and is described. Both uniform and non-uniform models of output loading are considered. The algorithm requires knowledge of the number of cells requesting each output module from a given input module. A fast method for counting the number of requests is described.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Spacetime replication of continuous variable quantum information (2016)

The theory of relativity requires that no information travel faster than light, whereas the unitarity of quantum mechanics ensures that quantum information cannot be cloned. These conditions provide the basic constraints that appear in information replication tasks, which formalize aspects of the behavior of information in relativistic quantum mechanics. In this article, we provide continuous variable (CV) strategies for spacetime quantum information replication that are directly amenable to optical or mechanical implementation. We use a new class of homologically-constructed CV quantum error correcting codes to provide efficient solutions for the general case of information replication. As compared to schemes encoding qubits, our CV solution requires half as many shares per encoded system. We also provide an optimized five-mode strategy for replicating quantum information in a particular configuration of four spacetime regions designed not to be reducible to previously performed experiments. For this optimized strategy, we provide detailed encoding and decoding procedures using standard optical apparatus and calculate the recovery fidelity when finite squeezing is used. As such we provide a scheme for experimentally realizing quantum information replication using quantum optics.
Nonresonant Raman imaging of protein distribution in single human cells (2002)

A confocal Raman microscope is used to study the protein distribution inside biological cells. It is shown that high quality Raman imaging of the protein distribution can be obtained using confocal nonresonant Raman imaging (lambda(exc) = 647.1 nm). The results are shown for two different human cell types. Perpheral blood lymphocytes are used as an example of the fully maturated cells with a low level of nuclear transcription. Human eye lens epithelial cells are used as an example of cells with a high level of nuclear activity. The protein distribution in both cell types is completely different. The nuclear distribution of the protein largely varies in the peripheral blood lymphocyte cells, while proteins are more homogenously distributed over the nuclear space in the eye lens epithelial cells. The imaging time is approximately 20 min for a field of view of 10 x 10 microm(2). The size of the sampling volume is 1.4 fL using a full width at half-maximum criterion along the z axis and a 1/e(2) criterion in the xy plane. The results presented here indicate that Raman imaging is particularly of interest in the study of cellular processes, like phagocytosis, apoptosis, chromatin compaction, and cellular differentiation, which are accompanied by relatively large-scale redistributions of the materials.
Translactonization in erythromycins (1987)

When erythromycin A is heated in diethylamine-acetic acid, an erythromycin hemiketal is obtained, which can be further transformed into a new enol ether and spiroketal. The new enol ether is also obtained in equilibrium with the normal one on heating erythromycin A or B in pyridine-acetic acid. The novel compounds, which will be called pseudoerythromycin derivatives, are characterized by a translactonization between the C11-hydroxyl and the lactone group. Their structure was proved by mass and1H and13C NMR spectrometry, by acetylation experiments, and by degradation with lead tetraacetate. © 1987, American Chemical Society. All rights reserved.
Non-thermal Cellular Effects of Low-power Microwave Radiation on the Lens and Lens Epithelial Cells (2010)

Because of the increased use of modern radiofrequency devices, public concern about the possible health effects of exposure to microwave radiation has arisen in many countries. It is well established that high-power microwave radiation can induce cataracts via its thermal effects. It remains unclear whether low-power microwave radiation, especially at levels below the current exposure limits, is cataractogenic. This review summarizes studies on the biological effects of low-power microwave radiation on lens and lens epithelial cells (LECs). It has been reported that exposure affects lens transparency, alters cell proliferation and apoptosis, inhibits gap junctional intercellular communication, and induces genetic instability and stress responses in LECs. These results raise the question of whether the ambient microwave environment can induce non-thermal effects in the lens and whether such effects have potential health consequences. Further in vivo studies on the effects on the lens of exposure to low-power microwave radiation are needed.
PHEOPHORBIDE<i>a</i>‐INDUCED PHOTO‐OXIDATION OF CYTOCHROME<i>c</i>: IMPLICATION FOR PHOTODYNAMIC THERAPY (1992)

Pheophorbide a-induced photo-oxidation, in vitro, of cytochrome c oxidase and cytochrome c results in irreversible modifications to both protein components. Photo-oxidation of cytochrome c, as exhibited by change in its heme oxidation state, displays exponential kinetics and is detected with a lag period. Both the photo-induced inactivation of the enzyme, and destruction of the substrate ability of cytochrome c occur as complex multi-process events. Under similar experimental conditions, the loss of the substrate capability of cytochrome c develops approximately three times faster than inactivation of the enzyme. The slight lag in the photo-oxidation of cytochrome c is due to pheophorbide a-induced superoxide production. However, the relative amount of photo-oxidant produced is considerably more effective than the cytochrome c reducing capacity of the superoxide. Neither hydroxyl radical nor hydrogen peroxide are involved in the photo-oxidation of the heme function. The possibilities of heme oxidation by a singlet oxygen mediated pathway or direct electron abstraction involving the heme or apoprotein are not excluded. It is proposed that a multi-site oxidation of numerous reduced energy cofactors within cells may augment collateral enzyme inactivation in maximizing photosensitizer-induced cytotoxicity. Accordingly, amphipathic photosensitizers, capable of accessing both lipid and aqueous compartments containing reduced cofactors, may be more effective agents for photodynamic therapy than those which exhibit a high specificity of subcellular localization.
The Lubricity of Gasoline (1999)

A study has been made of the lubricating properties of gasoline fuel. A conventional HFRR diesel fuel lubricity tester has been modified to measure gasoline wear. Using this test equipment, a number of features of gasoline lubricity have been investigated, including the comparative lubricating behavior of gasoline, the influence of detergent additives and oxygenates on wear and the wear behavior of a series of refinery streams employed in gasoline blending. The lubricity of a range of pure organic chemicals known to be present in gasoline has also been studied. From these measurements it has been shown that, except for components such as dienes and diaromatics, the HFRR lubricating properties of most gasoline hydrocarbon constituents are broadly independent of chemical structure bur depend significantly on viscosity. Using these measurements, predictive wear equations based on gasoline group analysis have been developed. Because it has been found that viscosity plays a role in determining the wear properties of gasoline, the elastohydrodynamic (EHD) film-forming and friction properties of gasoline have been measured and compared to those of diesel fuels. This shows that the combination of gasoline's very low viscosity and low pressure-viscosity coefficient results in very thin EHD film thickness generation and also very low friction in full-film EHD conditions.