gebhart/patrepeval huggingface dataset:
Role of Toll-Like Receptor 4 in Mediating Multiorgan Dysfunction in Mice With Acetaminophen Induced Acute Liver Failure (2013)

Strategies for the prevention of multiorgan dysfunction (MOD) in acetaminophen (APAP)-induced acute liver failure (ALF) are an unmet need. Our study tested the hypothesis that sterile inflammation induced by APAP in a mouse model would activate toll-like receptor 4 (TLR4) in the liver and extrahepatic organs and lead to the progression of ALF and MOD and that the administration of the novel TLR4 antagonist STM28 (a peptide formed of 17 amino-acids) would prevent liver injury and associated MOD. ALF and, subsequently, MOD were induced in TLR4-knockout (KO) mice (B6.B10ScN-Tlr4 (lpsdel) /JthJ) and wild-type (WT) mice (C57BL/6) with APAP (500 mg/kg). A second set of experiments was conducted to evaluate the effects of a pretreatment with a novel TLR4 antagonist, STM28, on APAP-induced MOD in CD1 mice. Animals were sacrificed at the coma stage, and plasma, peripheral blood cells, liver, kidneys, and brain were collected. Biochemistry values and cytokines were measured. Liver and kidneys were studied histologically and were stained for TLR4 and activated Kupffer cells, and the expression of nuclear factor kappa B-p65 was quantified with western blotting. Brain water was measured in the frontal cortex. After APAP administration, TLR4-KO (NFkBp65) mice were relatively protected from liver necrosis and end-organ dysfunction and had significantly better survival than WT controls (P < 0.01). STM28 attenuated liver injury and necrosis, reduced creatinine levels, and delayed the time to a coma significantly. The increases in cytokines in the plasma and liver, including TLR4 expression and the activation of Kupffer cells, after APAP administration were reduced significantly in the STM28-treated animals. The increased number of circulating myeloid cells was reduced significantly after STM28 treatment. In conclusion, these data provide evidence for an important role of the TLR4 antagonist in the prevention of the progression of APAP-induced ALF and MOD.
Neuronal cell death in neurodegenerative diseases: recurring themes around protein handling (2008)

Neuronal cell death plays a role in many chronic neurodegenerative diseases with the loss of particular subsets of neurons. The loss of the neurons occurs during a period of many years, which can make the mode(s) of cell death and the initiating factors difficult to determine. In vitro and in vivo models have proved invaluable in this regard, yielding insight into cell death pathways. This review describes the main mechanisms of neuronal cell death, particularly apoptosis, necrosis, excitotoxicity and autophagic cell death, and their role in neurodegenerative diseases such as ischaemia, Alzheimer's, Parkinson's and Huntington's diseases. Crosstalk between these death mechanisms is also discussed. The link between cell death and protein mishandling, including misfolded proteins, impairment of protein degradation, protein aggregation is described and finally, some pro-survival strategies are discussed.
A study of head and neck cancer patients with special reference to tobacco use and educational level (2017)

Background: In India, head and neck cancers (HNCs) are common and constitute 20%–30% of all cancers. The most common risk factors are consumption of tobacco and alcohol. Betel nut chewing with or without tobacco is a major risk factor for HNC in India, especially in the Northeast India. Materials and Methods: This was a hospital-based retrospective study to measure the descriptive scenario of HNC cases along with their demographic and risk factor profile. The patients diagnosed from June 01, 201
Clustering mixed numerical and low quality categorical data (2005)

We present the M-BILCOM algorithm for clustering mixed numerical and categorical data sets, in which the categorical attribute values (CAs) are not certain to be correct and have associated confidence values (CVs) from 0.0 to 1.0 to represent their certainty of correctness. M-BILCOM performs bi-level clustering of mixed data sets resembling a Bayesian process. We have applied M-BILCOM to yeast data sets in which the CAs were perturbed randomly and CVs were assigned indicating the confidence of correctness of the CAs. On such mixed data sets M-BILCOM outperforms other clustering algorithms, such as AutoClass. We have applied M-BILCOM to real numerical data sets from gene expression studies on yeast, incorporating CAs representing Gene Ontology annotations on the genes and CVs representing Gene Ontology Evidence Codes on the CAs. We apply novel significance metrics to the CAs in resulting clusters, to extract the most significant CAs based on their frequencies and their CVs in the cluster. For genomic data sets, we use the most significant CAs in a cluster to predict gene function.
A 2/3-inch 2M-pixel STACK-CCD imager (2002)

Shrinking pixel size in conventional CCD imagers degrades device performance. Unsatisfactory smear noise of -90 dB is attained in a 2/3-inch 2M pixel CCD imager. The STACK-CCD imager has a great advantage regarding this problem. A 100% aperture ratio and low smear noise are maintained regardless of future pixel shrinking, because CCD scanning circuits are overlaid with an amorphous silicon (a-Si) photoconversion layer.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
The Stability of Talc (1973)

The stability of talc (MgbSLO*(OH)r) has been estimated using three separate lines of approach. The AGr(25, I, talc) value obtained (-1320 kcal) seems to be consistent with observed natural occurrences of talc. Reassessment of the stability of chrysotile (MgSirO.(OH)n),
Tumor Necrosis Factor (TNF)-mediated Neuroprotection against Glutamate-induced Excitotoxicity Is Enhanced by N-Methyl-D-aspartate Receptor Activation (2004)

We have previously shown that two tumor necrosis factor (TNF) receptors (TNFR) exhibit antagonistic functions during neurodegenerative processes in vivo with TNFR1 aggravating and TNFR2 reducing neuronal cell loss, respectively. To elucidate the neuroprotective signaling pathways of TNFR2, we investigated glutamate-induced excitotoxicity in primary cortical neurons. TNF-expressing neurons from TNF-transgenic mice were found to be strongly protected from glutamate-induced apoptosis. Neurons from wild type and TNFR1(-/-) mice prestimulated with TNF or agonistic TNFR2-specific antibodies were also resistant to excitotoxicity, whereas TNFR2(-/-) neurons died upon glutamate and/or TNF exposures. Both protein kinase B/Akt and nuclear factor-kappa B (NF-kappa B) activation were apparent upon TNF treatment. Both TNFR1 and TNFR2 induced the NF-kappa B pathway, yet with distinguishable kinetics and upstream activating components, TNFR1 only induced transient NF-kappa B activation, whereas TNFR2 facilitated long term phosphatidylinositol 3-kinase-dependent NF-kappa B activation strictly. Glutamate-induced triggering of the ionotropic N-methyl-D-aspartate receptor was required for the enhanced and persistent phosphatidylinositol 3-kinase-dependent NF-kappa B activation by TNFR2, indicating a positive cooperation of TNF and neurotransmitter-induced signal pathways. TNFR2-induced persistent NF-kappa B activity was essential for neuronal survival. Thus, the duration of NF-kappa B activation is a critical determinant for sensitivity toward excitotoxic stress and is dependent on a differential upstream signal pathway usage of the two TNFRs.
Discovery of a second 15 <i>S</i> -lipoxygenase in humans (1997)

The lipoxygenase metabolism of arachidonic acid occurs in specific blood cell types and epithelial tissues and is activated in inflammation and tissue injury. In the course of studying lipoxygenase expression in human skin, we detected and characterized a previously unrecognized enzyme that at least partly accounts for the 15S-lipoxygenase metabolism of arachidonic acid in certain epithelial tissues. The cDNA was cloned from human hair roots, and expression of the mRNA was detected also in prostate, lung, and cornea; an additional 16 human tissues, including peripheral blood leukocytes, were negative for the mRNA. The cDNA encodes a protein of 676 amino acids with a calculated molecular mass of 76 kDa. The amino acid sequence has approximately 40% identity to the known human 5S-, 12S-, and 15S-lipoxygenases. When expressed in HEK 293 cells, the newly discovered enzyme converts arachidonic acid exclusively to 15S-hydroperoxyeicosatetraenoic acid, while linoleic acid is less well metabolized. These features contrast with the previously reported 15S-lipoxygenase, which oxygenates arachidonic acid mainly at C-15, but also partly at C-12, and for which linoleic acid is an excellent substrate. The different catalytic activities and tissue distribution suggest a distinct function for the new enzyme compared with the previously reported human 15S-lipoxygenase.
Lack of chromosome territoriality in yeast: Promiscuous rejoining of broken chromosome ends (1996)

Various studies suggest that eukarytoic chromosomes may occupy distinct territories within the nucleus and that chromosomes are tethered to a nuclear matrix. These constraints might limit interchromosomal interactions. We have used a molecular genetic test to investigate whether the chromosomes of Saccharomyces cerevisiae exhibit such territoriality. A chromosomal double-strand break (DSB) can be efficiently repaired by recombination between flanking homologous repeated sequences. We have constructed a strain in which DSBs are delivered simultaneously to both chromosome III and chromosome V by induction of the HO endonuclease. The arrangement of partially duplicated HIS4 and URA3 sequences around each HO recognition site allows the repair of the two DSBs in two alternative ways: (i) the creation of two intrachromosomal deletions or (ii) the formation of a pair of reciprocal translocations. We show that reciprocal translocations are formed approximately as often as the pair of intrachromosomal deletions. Similar results were obtained when one of the target regions was moved from chromosome V to any of three different locations on chromosome XI. These results argue that the broken ends of mitotic chromosomes are free to search the entire genome for appropriate partners; thus, mitotic chromosomes are not functionally confined to isolated domains of the nucleus, at least when chromosomes are broken.
Preliminary Results on 3D Channel Modeling: From Theory to Standardization (2014)

Three dimensional (3D) beamforming (also elevation beamforming) is now gaining interest among researchers in wireless communication. The reason can be attributed to its potential for enabling a variety of strategies such as sector or user specific elevation beamforming and cell-splitting. Since these techniques cannot be directly supported by current LTE releases, the 3GPP is now working on defining the required technical specifications. In particular, a large effort is currently being made to get accurate 3D channel models that support the elevation dimension. This step is necessary as it will evaluate the potential of 3D and full dimensional (FD) beamforming techniques to benefit from the richness of real channels. This work aims at presenting the on-going 3GPP study item “study on 3D-channel model for elevation beamforming and FD-MIMO studies for LTE” and positioning it with respect to previous standardization works.
LocNet: Improving Localization Accuracy for Object Detection (2016)

We propose a novel object localization methodology with the purpose of boosting the localization accuracy of stateof-the-art object detection systems. Our model, given a search region, aims at returning the bounding box of an object of interest inside this region. To accomplish its goal, it relies on assigning conditional probabilities to each row and column of this region, where these probabilities provide useful information regarding the location of the boundaries of the object inside the search region and allow the accurate inference of the object bounding box under a simple probabilistic framework. For implementing our localization model, we make use of a convolutional neural network architecture that is properly adapted for this task, called LocNet. We show experimentally that LocNet achieves a very significant improvement on the mAP for high IoU thresholds on PASCAL VOC2007 test set and that it can be very easily coupled with recent stateof-the-art object detection systems, helping them to boost their performance. Finally, we demonstrate that our detection approach can achieve high detection accuracy even when it is given as input a set of sliding windows, thus proving that it is independent of box proposal methods.
The Reaction of Itaconic Acid with Primary Amines (1950)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTThe Reaction of Itaconic Acid with Primary AminesPeter L. Paytash, Edward Sparrow, and Joseph C. GatheCite this: J. Am. Chem. Soc. 1950, 72, 3, 1415–1416Publication Date (Print):March 1, 1950Publication History Published online1 May 2002Published inissue 1 March 1950https://pubs.acs.org/doi/10.1021/ja01159a520https://doi.org/10.1021/ja01159a520research-articleACS PublicationsRequest reuse permissionsArticle Views1177Altmetric-Citations58LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Intermediate filaments are dynamic and motile elements of cellular architecture (2003)

Recent evidence showing that intermediate filaments (IFs) are dynamic, motile elements of the cytoskeletal repertoire of vertebrate cells has overturned the long-standing view that they simply form static 'space filling' cytoplasmic networks. In fact, many types of IF are now known to engage in a remarkable array of movements that are closely associated with their assembly, disassembly and subcellular organization. Some of these motile properties are intrinsic to IFs and others are attributable to molecular crosstalk with either microtubules or actin-containing microfilaments. This crosstalk is, to a large extent, mediated by molecular motors, including conventional kinesin and cytoplasmic dynein. These motors are responsible for the high-speed delivery of nonfilamentous IF precursors and short filaments to specific regions of the cytoplasm, where they assemble into long IFs. Interestingly, the patterns and speeds of IF movements vary in different cell types and even within different regions of the same cell. These differences in motility may be related to their interactions with different types of molecular motor and/or other factors, such as IF-associated proteins.
Using a straightness reference in obtaining more accurate surface profiles from a long trace profiler (1992)

The long trace profiler (Takacs et al.) has found significant applications in measuring the surfaces of synchrotron optics. However, requirements of small slope errors at all spatial wavelengths of the synchrotron optics mandate more accurate slope measurements. A straightness reference for the long trace profiler greatly increases the accuracy of the instrument. Methods of using the straightness reference by interpreting the sequential interference patterns are discussed and results of measurements are presented.
Topological cell compaction via transister rotation (2002)

The authors propose a new algorithm for layout compaction by modifying the topology of a given layout. Different from most compaction algorithms which move the components of a layout, this algorithm compacts a layout by changing the orientations of transistors. A set of operations including moving, adding, deleting, shrinking, extending, etc., can work on the wires to rebuild and compact the layout after rotating a transistor. The simulated annealing technique is adopted in the authors' algorithm to find a near optimal solution.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Tribo-Catalysis in the Synthesis Reaction of Carbon Dioxide (2004)

Palladium was rubbed against aluminum oxide in an atmosphere of carbon monoxide and oxygen. The synthesis of carbon dioxide was enhanced during the rubbing. The activation energy of this reaction was 2.49 kJ/mol. As the sliding commenced, the desorption of carbon dioxide overshot its equilibrium value before stabilizing. The overshoot correlated with the time interval between the friction tests. The desorption mechanism of carbon dioxide is discussed in terms of the NIRAM (negative-ion-radical action mechanism) approach; exoelectron emission was enhanced by the friction of palladium. The electrons reacted with the adsorbed species to make negative-ion-radicals. These radicals further reacted on the surface to form carbon dioxide, which then desorbed.
Analysis of the BRAFV600E Mutation in Central Nervous System Tumors (2012)

BRAF(V600E) mutations are involved in the development of melanoma, colon cancer, and papillary thyroid carcinoma. These mutations are also found in primary brain tumors at low to moderate frequencies. In this study, we investigated a series of brain tumors to determine the prevalence and associated clinicopathologic features of BRAF(V600E) mutations. By direct sequencing, we analyzed 223 brain tumors, including 51 gangliogliomas (GGs), 45 pilocytic astrocytomas (PAs), 12 pleomorphic xanthoastrocytomas (PXAs), 35 glioblastomas (GBs), 28 anaplastic astrocytomas (AAs), 44 oligodendroglial tumors (ODGs), 3 anaplastic oligoastrocytomas, and 5 diffuse astrocytomas. Thirty-six cases (16.1%) exhibited the BRAF(V600E) mutation, including 66.7% of PXAs, 23.5% of GGs, 15.6% of PAs, and 9.7% of the malignant gliomas; the latter included 14.3% of AAs, 8.6% of GBs, and 4.5% of ODGs. Copy number aberration at the 7q34 (BRAF) locus was found in 73.1% of PAs and 50% of PXAs. 9p Homozygous deletion was found in 66.7% of PXAs, but it was not correlated with the BRAF(V600E) mutation. Patients' age, sex, histologic grade, and progression-free survival were also not correlated with the BRAF(V600E) mutation. The BRAF(V600E) mutation in brain tumors did not have prognostic value but is certainly a diagnostic marker and therapeutic target, not only for pediatric low-grade gliomas but also for malignant gliomas, even though the rate of mutation was not high. These results should be verified in a larger study with more cases and a longer follow-up period to overcome the limitation of small sample size.
Computation of maximal flows in networks (1955)

Abstract A simple computational method, based on the simplex algorithm of linear programming, is proposed for the following problem: “Consider a network (e.g., rail, road, communication network) connecting two given points by way of a number of intermediate points, where each link of the network has a number assigned to it representing its capacity. Assuming a steady state condition, find a maximal flow from one given point to the other.”
Introducing Narrative Psychiatry: Narrative Approaches to Initial Psychiatric Consultations (2005)

This paper is the first in a series to examine the use of narrative therapy approaches within psychiatry. The author, psychiatrist SuEllen Hamkims, describes ways in which narrative ideas shape the initial conversations she has with those who consult her. Initial psychiatric consultations are conceptualised as re-authoring conversations in which questions that generate experience and gather information assist in the development of a history of resistance to the problem. Examples of co-research and letter-writing are also offered. The paper ends with a reflection from Virginia Slaughter whose conversations with the author about experiences of depression are offered as examples of this work.
Role of nNOS in Regulation of Renal Function in Angiotensin II–Induced Hypertension (2001)

Previous studies have indicated that in normotensive rats, NO produced by neuronal NO synthase (nNOS) plays an important role in modulating tubuloglomerular feedback (TGF)-mediated afferent arteriolar constriction. It has also been shown that in angiotensin (Ang) II-infused hypertensive rats, there is a reduced ability of nNOS-derived NO to counteract this vasoconstriction. The present study was performed to (1) assess in vivo renal functional responses to intrarenal nNOS inhibition in control and Ang II-infused rats and (2) determine whether changes in renal function following nNOS inhibition are mediated by unopposed stimulation of Ang II receptor subtype 1 (AT(1)). Wistar rats were infused with either saline (SAL) or Ang II (80 ng/min) by osmotic minipumps implanted subcutaneously. Mean arterial blood pressure of SAL- and Ang II-infused rats on day 13 after implantation averaged 121+/-4 (n=28) and 151+/-5 (n=30), respectively (P<0.05). There were no differences in glomerular filtration rate (GFR) (0.68+/-0.09 versus 0.59+/-0.09 mL. min(-1). g(-1)), renal plasma flow (RPF) (2.66+/-0.31 versus 2.34+/-0.39 mL. min(-1). g(-1)), and absolute sodium excretion (0.37+/-0.07 versus 0.42+/-0.09 micromol. min(-1). g(-1)). Intrarenal infusion of SAL did not change GFR, RPF, and sodium excretion in either SAL-infused (n=7) or Ang II-infused rats (n=8). Acute intrarenal administration of the nNOS inhibitor S-methyl-L-thiocitrulline (L-SMTC; 0.3 mg/h) decreased GFR, RPF, and sodium excretion in SAL-infused rats (n=9) by 29+/-4%, 38+/-4%, and 70+/-4% compared with control values (P<0.05). The pretreatment by the AT(1) receptor antagonist candesartan (750 ng IR) in SAL-infused rats (n=7) effectively prevented the decrease in RPF (-3+/-3%) elicited by nNOS inhibition and resulted in an increase in GFR (+25+/-12, P<0.05) and a concomitant greater increase in sodium excretion (84+/-12%, P<0.05) compared with control values. In contrast, in Ang II-infused rats (n=10) intrarenal inhibition of nNOS by L-SMTC did not cause significant decreases in GFR, RPF and sodium excretion (-2+/-2%, -15+/-10%, and -14+/-10%, respectively). These results suggest that in normotensive rats nNOS-derived NO counteracts Ang II-mediated vasoconstriction in the pre- and postglomerular microcirculation. Furthermore, Ang II-infused rats exhibit an impaired ability to release NO by nNOS. Decreased nNOS activity is likely to account at least partially for the enhanced TGF responsiveness in Ang II-infused rats and thus may contribute to the maintenance of hypertension in this model.
Studies on Neurosteroids. I. Retention Behavior of Derivatized 17-Oxosteroids Using High-Performance Liquid Chromatography (1995)

Abstract The retention behavior of five 17-oxosteroids (dehydroepiandrosterone, epiandrosterone, androsterone, 5β -androsterone, and 5β -androstane-3β ol-17-one) derivatized with 5-dimethylamino-1-naphthalenesulfonic hydrazide, 4-(N,N-dimcthylaminosulfonyl)-7-hydrazino-2,1,3- benzoxadiazole or p-nitrophenylhydrazine are examined using reversed-phase high-performance liquid chromatography. Inclusion chromatography using cyclodextrin as a mobile phase additive is also used for this purpose and found effective in separating the isomeric derivatized 17-oxosteroids.