gebhart/patrepeval huggingface dataset:
The gene (<i>aroK</i>) encoding shikimate kinase I from<i>Escherichia coli.</i> (1995)

Shikimate kinase I (SKI), encoded by the aroK gene, converts shikimate to shikimate 3-phosphate, an intermediate in the biosynthesis of the aromatic amino acids. This paper provides evidence that the E. coli aroK reading frame is in a different place to that reported previously and presents a predicted SKI sequence of 173 residues and a molecular mass of 19.5 kDa. The translational start point of aroK is some 84 bp downstream of the site proposed earlier and the reading frame ends 169 bp beyond the stop site reported in the previous sequence. The SKI sequence reported here more closely resembles those from other organisms and the predicted molecular mass approximates more closely that determined by experiment.
Preservation of Carbon Dioxide Clathrate Hydrate at Temperatures below the Water Freezing Point under Atmospheric Pressure (2011)

This paper reports the experimental study on the preservation of CO2 hydrate crystal samples at domestic freezer conditions for 3 weeks. These samples were characterized by initial hydrate mass fractions of 0.95 and 0.50, by particle diameters of smaller than 2.8, 2.8–4.0, and 5.6–8.0 mm and greater than 8.0 mm, and also by preservation temperatures at 258 and 253 K. The results revealed that the stability of CO2 hydrate depends on the particle size, the initial hydrate mass fractions in the samples, and the preservation temperatures. Better stability was observed for CO2 hydrate crystal samples of larger particle size and lower initial hydrate fraction and preserved at lower temperature. Visual observations of CO2 hydrate crystal samples showed that dissociation occurs on the surface of the crystal samples. These experimental results indicated the possibility of the development of novel food/drink products containing CO2 hydrate.
Increased expression of apolipoprotein E in transgenic rabbits results in reduced levels of very low density lipoproteins and an accumulation of low density lipoproteins in plasma. (1998)

Transgenic rabbits expressing human apo E3 were generated to investigate mechanisms by which apo E modulates plasma lipoprotein metabolism. Compared with nontransgenic littermates expressing approximately 3 mg/dl of endogenous rabbit apo E, male transgenic rabbits expressing approximately 13 mg/dl of human apo E had a 35% decrease in total plasma triglycerides that was due to a reduction in VLDL levels and an absence of large VLDL. With its greater content of apo E, transgenic VLDL had an increased binding affinity for the LDL receptor in vitro, and injected chylomicrons were cleared more rapidly by the liver in transgenic rabbits. In contrast to triglyceride changes, transgenic rabbits had a 70% increase in plasma cholesterol levels due to an accumulation of LDL and apo E-rich HDL. Transgenic and control LDL had the same binding affinity for the LDL receptor. Both transgenic and control rabbits had similar LDL receptor levels, but intravenously injected human LDL were cleared more slowly in transgenic rabbits than in controls. Changes in lipoprotein lipolysis did not contribute to the accumulation of LDL or the reduction in VLDL levels. These observations suggest that the increased content of apo E3 on triglyceride-rich remnant lipoproteins in transgenic rabbits confers a greater affinity for cell surface receptors, thereby increasing remnant clearance from plasma. The apo E-rich large remnants appear to compete more effectively than LDL for receptor-mediated binding and clearance, resulting in delayed clearance and the accumulation of LDL in plasma.
The wearARM modular, low-power computing core (2001)

The wearARM computing core for wearable applications uses highly miniaturized, mechanically flexible electronic packaging technology. Used with the MIThril platform, the system supports high-performance, low-power, user configurable wearable computing with wireless connectivity and local mass storage.
Direct Modulation of Hybrid-Integrated InP/Si Transmitters for Short and Long Reach Access Network (2015)

Recent progresses on hybrid InP/Si integration are presented for achieving high-performance tunable transmitters for cost-sensitive wavelength division multiplexing access networks. We demonstrate the generation of on-off keying non return to zero modulation format using several types of integrated directly modulated and tunable lasers. The use of the high output power hybrid silicon transmitter enables up to 28.5 dB optical budget at BER = 3.8 × 10 <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">-3</sup> (in-band FEC assumed) under 10 Gb/s direct modulation over 25 and 50 km. Long-reach transmission over 100 km single-mode fiber is also demonstrated. Based on an enhanced modulation bandwidth hybrid laser, we successfully achieve 21.4 Gb/s direct modulation including FEC overhead on 12 wavelengths over a short-reach access link (10 km).
Role of uncoupled and non-coupled oxidations in maintenance of safely low levels of oxygen and its one-electron reductants (1996)

Abstract To proceed at a high rate, phosphorylating respiration requires ADP to be available. In the resting state, when the energy consumption is low, the ADP concentration decreases so that phosphorylating respiration ceases. This may result in an increase in the intracellular concentrations of O 2 as well as of one-electron O 2 reductants such as These two events should dramatically enhance non-enzymatic formation of reactive oxygen species, i.e. of , and OHׁ, and, hence, the probability of oxidative damage to cellular components. In this paper, a concept is put forward proposing that non-phosphorylating (uncoupled or non-coupled) respiration takes part in maintenance of low levels of both O 2 and the O 2 reductants when phosphorylating respiration fails to do this job due to lack of ADP. In particular, it is proposed that some increase in the H + leak of mitochondrial membrane in State 4 lowers , stimulates O 2 consumption and decreases the level of which otherwise accumulates and serves as one-electron O 2 reductant. In this connection, the role of natural uncouplers (thyroid hormones), recouplers (male sex hormones and progesterone), non-specific pore in the inner mitochondrial membrane, and apoptosis, as well as of non-coupled electron transfer chains in plants and bacteria will be considered.
Electrochemical Reduction of Carbon Dioxide at Various Metal Electrodes in Aqueous Potassium Hydrogen Carbonate Solution (1990)

Abstract The electrochemical reduction of carbon dioxide at various metallic electrodes was carried out potentiostatically at 298 K in aqueous potassium hydrogen carbonate solution in order to make clear the electrocatalysis of metals in reduction of CO2. It was found that metals used as electrodes are classified into four groups according to their main products from CO2, i. e., metallic In, Sn, Hg, and Pb are selective for the production of formic acid; metallic Ag and Au are selective for the formation of carbon monoxide; metallic copper has the highest electrocatalytic activities in formation of hydrocarbons, aldehydes, and alcohols; and metallic Al, Ga, Group a, and Group VIII elements except Pd have scarce electrocatalytic activity in reduction of CO2. Effects of the reduction potential on products from CO2 were also examined in detail for Zn, In, and Au electrodes which have some interesting properties.
DIAGNOSIS OF ENDOCRINE DISEASE: Thyroglobulin measurement using highly sensitive assays in patients with differentiated thyroid cancer: a clinical position paper (2014)

Differentiated thyroid cancer (DTC) is the most common endocrine cancer and its incidence has increased in recent decades. Initial treatment usually consists of total thyroidectomy followed by ablation of thyroid remnants by iodine-131. As thyroid cells are assumed to be the only source of thyroglobulin (Tg) in the human body, circulating Tg serves as a biochemical marker of persistent or recurrent disease in DTC follow-up. Currently, standard follow-up for DTC comprises Tg measurement and neck ultrasound combined, when indicated, with an additional radioiodine scan. Measurement of Tg after stimulation by endogenous or exogenous TSH is recommended by current clinical guidelines to detect occult disease with a maximum sensitivity due to the suboptimal sensitivity of older Tg assays. However, the development of new highly sensitive Tg assays with improved analytical sensitivity and precision at low concentrations now allows detection of very low Tg concentrations reflecting minimal amounts of thyroid tissue without the need for TSH stimulation. Use of these highly sensitive Tg assays has not yet been incorporated into clinical guidelines but they will, we believe, be used by physicians caring for patients with DTC. The aim of this clinical position paper is, therefore, to offer advice on the various aspects and implications of using these highly sensitive Tg assays in the clinical care of patients with DTC.
Functional role of estrogen in pituitary tumor pathogenesis (2002)

Pituitary hyperplasia and lactotroph replication are induced by estrogen. The product of the pituitary tumor transforming gene (PTTG) exhibits in vitro and in vivo transforming activity and induces basic bFGF secretion, thereby modulating pituitary angiogenesis and tumor formation. We demonstrated previously that pituitary pttg is induced by estrogen and bFGF, the latter being expressed in a concordant fashion with pttg in experimental and human pituitary adenomas. We now elucidate the role of estrogen in paracrine regulation of pituitary tumorigenesis by PTTG. Coincident with the circulating rat estradiol surge and maximal pituitary proliferation, pituitary pttg mRNA, bFGF, and VEGF expression increased approximately threefold during proestrus and estrus. Osmotic mini-pump coinfusion of estrogen and antiestrogen abrogated estrogen-induced pituitary pttg expression in vivo, suppressed serum PRL concentrations by 88%, and attenuated prolactin-secreting pituitary tumor growth by 41% in rats. Antiestrogen treatment of primary human pituitary tumor cultures reduced PTTG expression approximately 65%. Pituitary pttg, bFGF, and VEGF are cyclically expressed during the rat estrus cycle, concordantly with estrogen levels. Because anti-estrogens reduced PTTG expression in human pituitary tumors in vitro and suppressed experimental tumor growth in vivo, concomitantly with reduced PRL secretion, these results indicate a role for selective antiestrogens in treating pituitary tumors.
Local Knowledge in Action (2004)

This article examines the value of local knowledge in the creative phase of planning practice. It uses the case study of an urban renewal project in Antwerp to explore the ways that workshop participants made sense of the planning situation. Analysis of the “talks” identified shared interpretive “frames” employed by the lay participants. The article goes on to discuss how distinctive these were from the professionals’ perspectives and what the consequences were for the material outcomes of the planning process. It was concluded that the public input was used to making adjustments to planning solutions rather than formulating new interpretations of the planning situation itself.
Ondansetron: A Novel Anti-anxiety Agent (1991)

Although the widely used benzodiazepines for control of anxiety have met with high patient acceptance, there is a hesitation about long-term use owing to the possibility of dependence. The new azaspirodecanedione compounds such as buspirone (Buspar) are free from dependence but raise the spectre of tardive dyskinesia since they are derivatives of the butyro-phenones. Furthermore, the azaspirodecanediones have a limitation in that the onset of the anti-anxiety benefit might take a week or two. Therefore, ondansetron, a novel compound with antianxiety properties, was studied in outpatients who met the American Psychiatric Association Diagnostic and Statistical Manual III (DSM-III) criteria for generalized anxiety disorder with or without panic attacks. This report is on the methodological difficulties encountered in such a clinical investigation.
A silver enhanced, gold labelled, immunosorbent assay for detecting antibodies to rubella virus. (1991)

A silver enhanced, gold labelled, immunosorbent assay (SEGLISA) for the detection of IgG antibodies to the rubella virus in human serum was developed. Pre-coated microtitre wells are used as the immobilised base of rubella antigens on to which any rubella antibodies from patient samples will bind. This antigen/antibody complex is then visualised firstly by gold labelled anti-immunoglobulin G, which binds to any human IgG that may be present, and then by silver amplification, resulting in a black permanent deposit on the microtitre well surface. Patient samples (n = 121) were screened using a commercially available enzyme linked immunosorbent assay (ELISA) and an equivalent SEGLISA. Results were comparable but the SEGLISA does not have the disadvantages associated with enzyme labels. The silver deposit may also be read visually or the dried plate may be stored for future reference.
Chronic Wasting Disease (2005)

Chronic wasting disease (CWD) is a unique transmissible spongiform encephalopathy (TSE) of mule deer (Odocoileus hemionus), white-tailed deer (O. virginianus), and Rocky Mountain elk (Cervus elaphus nelsoni). The natural history of CWD is incompletely understood, but it differs from scrapie and bovine spongiform encephalopathy (BSE) by virtue of its occurrence in nondomestic and free-ranging species. CWD has many features in common with scrapie, including early widespread distribution of disease-associated prion protein (PrP(d)) in lymphoid tissues, with later involvement of central nervous system (CNS) and peripheral tissues. This distribution likely contributes to apparent efficiency of horizontal transmission and, in this, is similar to scrapie and differs from BSE. Clinical features and lesions of CWD are qualitatively similar to the other animal TSEs. Microscopically, marked spongiform lesions occur in the central nervous system (CNS) after a prolonged incubation period and variable course of clinical disease. During incubation, PrP(d) can be identified in tissues by antibody-based detection systems. Although CWD can be transmitted by intracerebral inoculation to cattle, sheep, and goats, ongoing studies have not demonstrated that domestic livestock are susceptible via oral exposure, the presumed natural route of exposure to TSEs. Surveillance efforts for CWD in captive and free-ranging cervids will continue in concert with similar activities for scrapie and BSE. Eradication of CWD in farmed cervids is the goal of state, federal, and industry programs, but eradication of CWD from free-ranging populations of cervids is unlikely with currently available management techniques.
Double Compartmented and Hybrid Implant Outfitted with Well-Organized 3D Stem Cells for Osteochondral Regenerative Nanomedicine (2015)

This system mimics the natural gradient of the osteochondral unit, using only one kind of stem cell, targeting their ability to express specific bone or cartilage proteins. Mineralization gradient of articular cartilage and the natural 'glue' between subchondral bone and cartilage were reproduced in vitro.
In-hospital informal caregivers' needs as perceived by themselves and by the nursing staff in Northern Greece: A descriptive study (2011)

The in-hospital informal caregivers perceived that they have more educational and informational needs than the nurses did. The findings of this study also show that the nursing staff has to identify the needs of in-hospital informal caregivers in order to be able to meet these needs.
Hybrid Blockchain and Internet-of-Things Network for Underground Structure Health Monitoring (2018)

The Internet-of-things (IoT) and blockchain are growing realities of modern society, and both are rapidly transforming civilization, either separately or in combination. However, the leverage of both technologies for structural health monitoring (SHM) to enable transparent information sharing among involved parties and autonomous decision making has not yet been achieved. Therefore, this study combines IoT with blockchain-based smart contracts for SHM of underground structures to define a novel, efficient, scalable, and secure distributed network for enhancing operational safety. In this blockchain-IoT network, the characteristics of locally centralized and globally decentralized distribution have been activated by dividing them into core and edge networks. This division enhances the efficiency and scalability of the system. The proposed system was effective in simulation for autonomous monitoring and control of structures. After proper design, the decentralized blockchain networks may effectively be deployed for transparent and efficient information sharing, smart contracts-based autonomous decision making, and data security in SHM.
Risk factors associated with nosocomial methicillin-resistant Staphylococcus aureus (MRSA) infection including previous use of antimicrobials (2002)

Methicillin-resistant Staphylococcus aureus (MRSA) is a major nosocomial pathogen worldwide. To investigate an association between antimicrobial use and MRSA, a case control study of 121 patients infected with MRSA compared with 123 patients infected with methicillin-susceptible S. aureus (MSSA) was carried out. Antimicrobial use was analysed by three different logistic regression models: all beta-lactam antibiotics, beta-lactam antibiotics grouped in classes and antimicrobial use in grammes. Patients infected with MRSA tended to have more co-morbidities, longer lengths of stay (LOS) and greater exposure to antibiotics than MSSA-infected patients. Multivariate analysis identified levofloxacin [odds ratio (OR) 8.01], macrolides (OR 4.06), previous hospitalization (OR 1.95), enteral feedings (OR 2.55), surgery (OR 2.24) and LOS before culture (OR 1.03) as independently associated with MRSA infection. All models were concordant with the exception of macrolides, which were not significant based on the number of grammes administered. There were no significant differences in the types of infection or the attributed mortality in either group. MRSA-infected patients had a significantly longer LOS before infection [18.8 +/- 18.2 compared with 8.4 +/- 6.9 (P < 0.001)] and a significantly longer post-diagnosis LOS [27.8 +/- 32.9 compared with 18.6 +/- 21 (P = 0.01)] than MSSA-infected patients.
Itraconazole suppresses the growth of glioblastoma through induction of autophagy (2014)

Glioblastoma is one of the most aggressive human cancers with poor prognosis, and therefore a critical need exists for novel therapeutic strategies for management of glioblastoma patients. Itraconazole, a traditional antifungal drug, has been identified as a novel potential anticancer agent due to its inhibitory effects on cell proliferation and tumor angiogenesis; however, the molecular mechanisms involved are still unclear. Here, we show that itraconazole inhibits the proliferation of glioblastoma cells both in vitro and in vivo. Notably, we demonstrate that treatment with itraconazole induces autophagic progression in glioblastoma cells, while blockage of autophagy markedly reverses the antiproliferative activities of itraconazole, suggesting an antitumor effect of autophagy in response to itraconazole treatment. Functional studies revealed that itraconazole retarded the trafficking of cholesterol from late endosomes and lysosomes to the plasma membrane by reducing the levels of SCP2, resulting in repression of AKT1-MTOR signaling, induction of autophagy, and finally inhibition of cell proliferation. Together, our studies provide new insights into the molecular mechanisms regarding the antitumor activities of itraconazole, and may further assist both the pharmacological investigation and rational use of itraconazole in potential clinical applications.
Structural Characterization of Sodium Alginate and Calcium Alginate (2016)

Alginate readily aggregates and forms a physical gel in the presence of cations. The association of the chains, and ultimately gel structure and mechanics, depends not only on ion type, but also on the sequence and composition of the alginate chain that ultimately determines its stiffness. Chain flexibility is generally believed to decrease with guluronic residue content, but it is also known that both polymannuronate and polyguluronate blocks are stiffer than heteropolymeric blocks. In this work, we use atomistic molecular dynamics simulation to primarily explore the association and aggregate structure of different alginate chains under various Ca(2+) concentrations and for different alginate chain composition. We show that Ca(2+) ions in general facilitate chain aggregation and gelation. However, aggregation is predominantly affected by alginate monomer composition, which is found to correlate with chain stiffness under certain solution conditions. In general, greater fractions of mannuronic monomers are found to increase chain flexibility of heteropolymer chains. Furthermore, differences in chain guluronic acid content are shown to lead to different interchain association mechanisms, such as lateral association, zipper mechanism, and entanglement, where the mannuronic residues are shown to operate as an elasticity moderator and therefore promote chain association.
Tumor Lymphangiogenesis in Transitional Cell Carcinoma of the Upper Urinary Tract: Association With Clinicopathological Features and Prognosis (2006)

Lymphangiogenesis may have important roles in tumor metastasis and survival in patients with transitional cell carcinoma of the upper urinary tract. Quantification of lymphatic vessels, especially peritumor lymphatic vascular area and intratumor lymphatic vessels, was useful for predicting metastasis-free survival. In addition, the presence of intratumor lymphatic vessels was an independent predictor of cause specific survival.
Readout techniques and radiation damage of undoped cesium iodide (1990)

Several readout techniques for undoped CsI have been studied which utilize the fast scintillation component for speed and the high photon yield for good energy resolution. Quantum yields have been measured for samples up to 30 cm in length using photomultiplier tubes, wavelength shifters, and silicon photodiodes. A study has also been made of the scintillation properties of undoped CsI. It is found that the light output and decay time of the 310-nm fast component increases and the emission spectrum shifts to longer wavelengths at lower temperatures. The effects on the optical transmission and scintillation light output due to radiation damage from /sup 60/Co gamma rays have been measured for doses up to approximately 10/sup 6/ rad. It is found that the radiation resistance of undoped CsI is substantially higher than has been reported for thallium-doped CsI.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>