gebhart/patrepeval huggingface dataset:
Audio-disc scratch filter (1976)

A new method of detecting and removing the audible effects of scratch imperfections on audio discs is described.
Validation of a Nonrigid Registration Error Detection Algorithm Using Clinical MRI Brain Data (2014)

Identification of error in nonrigid registration is a critical problem in the medical image processing community. We recently proposed an algorithm that we call "Assessing Quality Using Image Registration Circuits" (AQUIRC) to identify nonrigid registration errors and have tested its performance using simulated cases. In this paper, we extend our previous work to assess AQUIRC's ability to detect local nonrigid registration errors and validate it quantitatively at specific clinical landmarks, namely the anterior commissure and the posterior commissure. To test our approach on a representative range of error we utilize five different registration methods and use 100 target images and nine atlas images. Our results show that AQUIRC's measure of registration quality correlates with the true target registration error (TRE) at these selected landmarks with an R(2)=0.542. To compare our method to a more conventional approach, we compute local normalized correlation coefficient (LNCC) and show that AQUIRC performs similarly. However, a multi-linear regression performed with both AQUIRC's measure and LNCC shows a higher correlation with TRE than correlations obtained with either measure alone, thus showing the complementarity of these quality measures. We conclude the paper by showing that the AQUIRC algorithm can be used to reduce registration errors for all five algorithms.
Gas etching and its effect on semiconductor surfaces (1960)

We’ve built this digital research platform to provide academics everywhere with fast, stable and secure digital access to our library of over 110,000 scholarly books and 800,000 journal articles. We’ve tested the platform in close cooperation with leading academic institutions. If you have any questions or you notice something doesn’t quite work as it should, please visit our <a href="/publishing/faq?lang=en" class="text-primary">Help/FAQ</a> page and let us know.
Ambient GABA Promotes Cortical Entry of Tangentially Migrating Cells Derived from the Medial Ganglionic Eminence (2005)

During corticogenesis, cells from the medial ganglionic eminence (MGE) migrate tangentially into the neocortical anlage. Here we report that gamma-aminobutyric acid (GABA), via GABAA receptors, regulates tangential migration. In embryonic telencephalic slices, bicuculline produced an outward current in migrating MGE-derived cells in the neocortex, suggesting the presence of and tonic activation by ambient GABA. Ambient GABA was also present in the MGE, although this required demonstration using as bioassay HEK293 cells expressing high-affinity alpha6/beta2/gamma2s recombinant GABAA receptors. The concentration of ambient GABA was 0.5+/-0.1 microM in both regions. MGE-derived cells before the corticostriate juncture (CSJ) were less responsive to GABA than those in the neocortex, and profiling of GABAA receptor subunit transcripts revealed different expression patterns in the MGE vis-à-vis the neocortex. These findings suggest a dynamic expression of GABAA receptor number or isoform as MGE-derived cells enter the neocortex and become tonically influenced by ambient GABA. Treatment with bicuculline or antibody against GABA did not affect migration of MGE-derived cells before the CSJ but decreased "crossing index," reflecting impeded migration past the CSJ into the neocortex. Treatment with diazepam or addition of exogenous GABA increased crossing index. We conclude that ambient GABA promotes cortical entry of tangentially migrating MGE-derived cells.
Antimicrobial peptides from hylid and ranin frogs originated from a 150‐million‐year‐old ancestral precursor with a conserved signal peptide but a hypermutable antimicrobial domain (2003)

The dermal glands of frogs produce antimicrobial peptides that protect the skin against noxious microorganisms and assist in wound repair. The sequences of these peptides are very dissimilar, both within and between species, so that the 5000 living anuran frogs may produce approximately 100 000 different antimicrobial peptides. The antimicrobial peptides of South American hylid frogs are derived from precursors, the preprodermaseptins, whose signal peptides and intervening sequences are remarkably conserved, but their C-terminal domains are markedly diverse, resulting in mature peptides with different lengths, sequences and antimicrobial spectra. We have used the extreme conservation in the preproregion of preprodermaseptin transcripts to identify new members of this family in Australian and South American hylids. All these peptides are cationic, amphipathic and alpha-helical. They killed a broad spectrum of microorganisms and acted in synergy. 42 preprodermaseptin gene sequences from 10 species of hylid and ranin frogs were analyzed in the context of their phylogeny and biogeography and of geophysical models for the fragmentation of Gondwana to examine the strategy that these frogs have evolved to generate an enormous array of peptide antibiotics. The hyperdivergence of modern antimicrobial peptides and the number of peptides per species result from repeated duplications of a approximately 150-million-year-old ancestral gene and accelerated mutations of the mature peptide domain, probably involving a mutagenic, error-prone, DNA polymerase similar to Escherichia coli Pol V. The presence of antimicrobial peptides with such different structures and spectra of action represents the successful evolution of multidrug defense by providing frogs with maximum protection against infectious microbes and minimizing the chance of microorganisms developing resistance to individual peptides. The hypermutation of the antimicrobial domain by a targeted mutagenic polymerase that can generate many sequence changes in a few steps may have a selective survival value when frogs colonizing a new ecological niche encounter different microbial predators.
Pest control & sustainable agriculture (1993)

The book provides a collection of over 140 papers representing some of the latest and best work on the subject. Every paper has been peer reviewed and carefully edited. The major topics are: integrated pest management; chemical control; pesticide resistance; biological control; microbial pest control; pheromones and attractants; host plant resistance and repellants; pasture and forage crop invertebrates; pest status and biology; population monitoring and genetics; modelling and forecasting; post harvest technology; and conclusions.
Development of a geothermal acoustic borehole televiewer (1983)

Most geothermal wells are drilled in hard rock formations where fluid flow is through systems of open fractures. Productivity of these wells is usually determined by the extent of intersection of the wellbore with the fracture system. A need exists for fracture mapping methods and tools which can operate in a geothermal environment. In less hostile environments, the acoustic borehole televiewer has been shown to be a useful tool for determining location, orientation, and characterization of fractures as they intersect the borehole and for general wellbore and casing inspection. The development conducted at Sandia National Laboratories to adapt an acoustic borehole televiewer for operation in a geothermal environment is described. The modified instrument has been successfully tested at temperatures as high as 280/sup 0/C and pressures up to 5000 psi, and used successfully to map fractures and casing damage in geothermal wells.
Microscopic Image Analysis for Life Science Applications (2008)

Bioimaging in life sciences is a burgeoning area that is of growing interest to today's professionals and researchers in the field. This is the first book that bridges the gap between biomedical imaging and the bioscience community. This unique resource gives professionals a detailed understanding of imaging platforms, fluorescence imaging, and fundamental image processing algorithms. Further, it guides readers through the application of advanced image analysis methods and techniques to specific biological problems. The book presents applications that span a wide range of scales, from the detection of signaling events in sub-cellular structures, to the automated analysis of tissue structures. Other critical areas discussed include the dynamics of cell populations and in vivo microscopy. A DVD is also included. It contains full-color images, movies and other valuable supplementary material that further illustrate topics discussed in the book.
Effect of Glycine on Insulin Secretion and Action in Healthy First-Degree Relatives of Type 2 Diabetes Mellitus Patients (2001)

The aim of this study was to identify the effect of glycine on insulin secretion and action in healthy first-degree relatives of Type 2 diabetes mellitus patients. A randomized, double-blind, placebo-controlled clinical trial was performed in 12 healthy, non-obese volunteers who were first-degree relatives of Type 2 diabetes mellitus patients. Six volunteers received a morning dose of glycine 5 g orally and the other six received placebo. At baseline without drugs and after pharmacological intervention, a metabolic profile and, to assess insulin secretion and action, a hyperglycemic-hyperinsulinemic clamp study were performed. There were no significant differences in baseline metabolic profile, insulin secretion or action between groups. Changes from baseline of early (p < 0.05), late (p < 0.05), and total insulin (p < 0.02) responses were higher in the glycine group than in controls. There were no significant differences in the changes from baseline of insulin action between groups. In conclusion, a morning dose of glycine 5 g orally increased early, late and total insulin responses without changes in insulin action in healthy first-degree relatives of Type 2 diabetes mellitus patients.
Transforming Growth Factor β1-mediated Activation of the Smooth Muscle α-Actin Gene in Human Pulmonary Myofibroblasts Is Inhibited by Tumor Necrosis Factor-α via Mitogen-activated Protein Kinase Kinase 1-dependent Induction of the Egr-1 Transcriptional Repressor (2009)

Transforming growth factor (TGF) beta1 is a mediator of myofibroblast differentiation in healing wounds in which it activates transcription of the smooth muscle alpha-actin (SMalphaA) gene via dynamic interplay of nuclear activators and repressors. Targeting components of TGFbeta1 signaling may be an effective strategy for controlling myofibroblasts in chronic fibrotic diseases. We examined the ability of proinflammatory tumor necrosis factor (TNF)-alpha to antagonize TGFbeta1-mediated human pulmonary myofibroblast differentiation. TNF-alpha abrogated TGFbeta1-induced SMalphaA gene expression at the level of transcription without disrupting phosphorylation of regulatory Smads. Intact mitogen-activated protein kinase kinase (Mek)-extracellular signal-regulated kinase (Erk) kinase signaling was required for myofibroblast repression by TNF-alpha via induction of the early growth response factor-1 (Egr-1) DNA-binding protein. Egr-1 bound to the GC-rich SPUR activation element in the SMalphaA promoter and potently suppressed Smad3- and TGFbeta1-mediated transcription. Reduction in Smad binding to the SMalphaA promoter in TNF-alpha-treated myofibroblasts was accompanied by an increase in Egr-1 and YB-1 repressor binding, suggesting that the molecular mechanism underlying repression may involve competitive interplay between Egr-1, YB-1, and Smads. The ability of TNF-alpha to attenuate myofibroblast differentiation via modulation of a Mek1/Erk/Egr-1 regulatory axis may be useful in designing new therapeutic targets to offset destructive tissue remodeling in chronic fibrotic disease.
Estrogen Receptor Status in Malignant Melanoma (1990)

Estrogen receptor (ER) positivity demonstrated in malignant melanomas by histochemical and biochemical assays suggested the possibility of hormonal management and improved prognosis as for breast carcinoma patients. We studied the ER status of 5 primary and 28 metastatic malignant melanomas with a commercial immunohistochemical kit (ER-ICA monoclonal), that utilizes monoclonal anti-ER and a peroxidase-antiperoxidase technique, and by a histochemical method using fluorescein-conjugated estradiol (Fluoro-Cep Estrogen assay), on frozen sections. In addition, we conducted a biochemical assay [dextran-coated charcoal cytosolic assay (DCC)] in 16 cases. All 33 cases were ER negative by ER-ICA and Fluoro-Cep: 11 biochemical assays were negative (less than 3 fmol ER/mg protein), four were in the borderline range (3 to 10 fmol ER/mg protein), and one was positive (greater than 10 fmol ER/mg protein) at 11 fmol. The melanomas in 97% of the cases we studied were ER negative by two or three different assays. Low-level estrogen binding of MM tissues may be the result of interactions other than with Type I true ER. The low frequency of ER positivity of malignant melanomas appears to preclude the clinical use of ER status as an indicator for response to hormonal manipulation in patients with malignant melanoma.
In Vivo Assessment of Radio Frequency Induced Thermal Damage of Kidney Using Optical Spectroscopy (2006)

Optical spectroscopy, specifically fluorescence and diffuse reflectance spectroscopy, differs significantly in porcine renal tissues with varying degrees of thermal damage from radio frequency ablation in an in vivo setting. Future clinical studies with sufficient sample size are required to validate the potential of these findings. Optical diagnostics may prove to be a rapid, noninvasive, low cost option for monitoring the tumor response to radio frequency based ablative techniques. It may be integrated into future radio frequency ablation probes.
Determination of Glycated Nucleobases in Human Urine by a New Monoclonal Antibody Specific for <i>N</i><sup>2</sup>-Carboxyethyl-2‘-deoxyguanosine (2004)

Sugars and sugar degradation products react in vivo readily with proteins (glycation) resulting in the formation of a heterogeneous group of reaction products, which are called advanced glycation end products (AGEs). AGEs notably change the structure and function of proteins so that extended protein-AGE formation is linked to complications such as nephropathy, atherosclerosis, and cataract. DNA can be glycated in vitro in a similar way as proteins, and the two diastereomers of N(2)-carboxyethyl-2'-deoxyguanosine (CEdG(A,B)) were identified as major DNA AGEs. It was postulated that DNA AGEs play an important role in aging, diabetes, and uremia. However, at the moment, sensitive methods to measure the extent and impact of DNA AGEs in vivo do not exist. In this study, we developed a monoclonal antibody, which recognized CEdG(A,B) with high affinity and specificity (MAb M-5.1.6). The I(50) value for CEdG(A,B) was 2.1 ng/mL, whereas other modified nuclueobases and AGE proteins showed negligible cross-reactivity. Unmodified 2'-deoxyguanosine was only weakly recognized with an I(50) value > 600,000 ng/mL, which is the limit of solubility. MAb M-5.1.6 was then used to measure the urinary excretion of AGE-modified nucleobases in a competitive enzyme-linked immunosorbent assay. The recovery of CEdG(A,B) from human urine was between 87.4 and 99.7% with coefficients of variations between 8.0 and 22.2%. The detection limit was 0.06 ng/mL, and the determination limit was 0.15 ng/mL with a linear range between 0.3 and 100 ng/mL. CEdG equivalents were analyzed in urine samples from 121 healthy volunteers, and concentrations between 1.2 and 117 ng CEdG equiv/mg creatinine were detected.
Network optimization trials of a vendor-independent methodology using the Ocelot® tool (2005)

Bell Labs Research and Lucent Worldwide Services (LWS) have developed a radio frequency (RF) optimization service to improve performance of cellular networks. This service utilizes the Bell Labs-developed Ocelot® software platform, which can simultaneously optimize coverage and capacity of the wireless air interface utilizing automated optimization routines. Field trials of the Ocelot platform have been conducted on two major wireless providers' networks. The first trial, conducted in a 20-cell region, showed an 18% increase in capacity, a 36% reduction of blocked calls, and a 20% reduction of dropped calls. The second trial, conducted in a 44-cell region, showed a 22% increase in capacity, a 10% reduction in blocked calls, and a 7% reduction in dropped calls. The Ocelot-related network improvements were achieved by making adjustments to antenna tilt/azimuth/pattern and transmit powers. The increased system capacity deferred (and in some cases reduced) the purchase of additional hardware. The methodology and the Ocelot tool are vendor independent. As a result of these trials, LWS has introduced new service offerings based on this tool.
Dual-Labeling Strategies for Nuclear and Fluorescence Molecular Imaging: A Review and Analysis (2011)

Molecular imaging is used for the detection of biochemical processes through the development of target-specific contrast agents. Separately, modalities such as nuclear and near-infrared fluorescence (NIRF) imaging have been shown to non-invasively monitor disease. More recently, merging of these modalities has shown promise owing to their comparable detection sensitivity and benefited from the development of dual-labeled imaging agents. Dual-labeled agents hold promise for whole-body and intraoperative imaging and could bridge the gap between surgical planning and image-guided resection with a single, molecularly targeted agent. In this review, we summarized the literature for dual-labeled antibodies and peptides that have been developed and have highlighted key considerations for incorporating NIRF dyes into nuclear labeling strategies. We also summarized our findings on several commercially available NIRF dyes and offer perspectives for developing a toolkit to select the optimal NIRF dye and radiometal combination for multimodality imaging.
The Apollo lunar surface water vapor event revisited (1991)

On March 7, 1971, the first sunrise following the Apollo 14 mission, the Suprathermal Ion Detector Experiment (SIDE) deployed at the Apollo 14 site reported an intense flux of ions whose mass per charge was consistent with water vapor. We examine the amount of water and discuss the various acceleration processes responsible for accelerating ions into the SIDE. We conclude that during most of the event the observed water vapor ions were accelerated by the negative lunar surface electric potential and secondly that this event was probably the result of mission associated water vapor, either from the LM ascent and descent stage rockets or from residual water in the descent stage tanks.
Identification of an immunologically important hypervariable domain of major outer surface protein A of Borrelia burgdorferi (1995)

The gene for the major outer surface protein A (OspA) from several clinically obtained strains of Borrelia burgdorferi, the cause of Lyme disease, has been cloned, sequenced, and expressed in Escherichia coli by using a T7-based expression system (J. J. Dunn, B. N. Lade, and A. G. Barbour, Protein Expr. Purif. 1:159-168, 1990). All of the OspAs have a single conserved tryptophan at residue 216 or, in some cases, 217; however, the region of the protein flanking the tryptophan is hypervariable, as determined by a moving-window population analysis of ospA from 15 European and North American isolates of B. burgdorferi. Epitope-mapping studies using chemically cleaved OspA and a TrpE-OspA fusion have indicated that this hypervariable region is important for immune recognition. Biophysical analysis, including fluorescence and circular dichroism spectroscopy, have indicated that the conserved tryptophan is buried in a hydrophobic environment. Polar amino acid side chains flanking the tryptophan are likely to be exposed to the hydrophilic solvent. The hypervariability of these solvent-exposed amino acid residues may contribute to the antigenic variation in OspA. To test this, we have performed site-directed mutagenesis to replace some of the potentially exposed amino acid side chains in the B31 protein with the analogous residues of a Borrelia garinii strain, K48. The altered proteins were then analyzed by Western blot (immunoblot) with monoclonal antibodies which bind OspA on the surface of the intact B31 spirochete. Our results indicate that specific amino acid changes near the tryptophan can abolish the reactivity of OspA to these monoclonal antibodies, which is an important consideration in the design of vaccines based on recombinant OspA.
Variation in Susceptibility to Avian Sarcoma Viruses and Expression of Endogenous Avian Leukosis Virus Antigens in Specific Pathogen-free Chicken Lines (1985)

Five lines of chickens maintained as specific pathogen-free flocks in Australia were characterized in relation to endogenous antigens and endogenous avian leukosis virus expression. Embryos of line N were predominantly of C/E phenotype, uniformly positive for group-specific antigen and chick helper factor (gs+chf+) and 38% expressed endogenous virus at a very low titre. Embryos of line M4 were uniformly of C/ABE phenotype and were either gs+chf+ or gs-chf+. Line W19 embryos segregated for susceptibility to viruses of subgroup A, B and D and were either of C/E or C/ABE phenotype. The majority of W19 embryos were gs+chf+ with a small proportion being gs+chf-. Line I13 embryos were either of C/0 or C/ABE phenotype, uniformly gs-chf- and 44% of embryos expressed endogenous virus at a low titre. Line S segregated for susceptibility to subgroup E virus and embryos were either of C/E or C/0 phenotype, while the majority of embryos from line S were gs-chf- with some embryos being gs+chf+ or gs-chf+. The degree of interference of gs+chf+ and gs-chf+ phenotypes with subgroup E virus infection was identical with the interference patterns of classical gs+chf+ and gs-chf+ phenotypes. The resistance to infection with avian sarcoma viruses of subgroups E in lines N and M4, and to a degree in line W19, was highly associated with the presence of chf. Resistance to subgroup E virus was independent of chf in lines S and I13, probably being under the control of an independent locus. Cellular restriction of endogenous virus replication existed in all subgroup E virus-susceptible cells of line I13 in contrast to cells of line S which supported replication of endogenous virus. The phenotype of chicken cells for the expression of endogenous gs antigen and chf could accurately be predicted from the test performed on whole blood cells.
<title>Status of uncooled infrared imagers</title> (1992)

Brassboard infrared imagers containing focal plane arrays of more than 80,000 uncooled detectors sensitive to radiation in the 8- to 14-micrometer wavelength region have been fabricated and tested. These imagers, which have demonstrated noise-equivalent temperature difference (NETD) values of 0.10 degree(s)C, do not require cryogenic cooling or mechanical scanning. Two different types of detector, one ferroelectric and the other bolometric, are used for the focal plane arrays. Measurements of NETD, minimum resolvable temperature (MRT) and modulation transfer function (MTF) are reported. Uncooled sensor technology is being incorporated into prototype security sensors and weapon sights that can also be used as handheld surveillance devices.