gebhart/patrepeval huggingface dataset:
Endurance training in obese humans improves glucose tolerance and mitochondrial fatty acid oxidation and alters muscle lipid content (2006)

Muscle fatty acid (FA) metabolism is impaired in obesity and insulin resistance, reflected by reduced rates of FA oxidation and accumulation of lipids. It has been suggested that interventions that increase FA oxidation may enhance insulin action by reducing these lipid pools. Here, we examined the effect of endurance training on rates of mitochondrial FA oxidation, the activity of carnitine palmitoyltransferase I (CPT I), and the lipid content in muscle of obese individuals and related these to measures of glucose tolerance. Nine obese subjects completed 8 wk of moderate-intensity endurance training, and muscle biopsies were obtained before and after training. Training significantly improved glucose tolerance, with a reduction in the area under the curve for glucose (P < 0.05) and insulin (P = 0.01) during an oral glucose tolerance test. CPT I activity increased 250% (P = 0.001) with training and became less sensitive to inhibition by malonyl-CoA. This was associated with an increase in mitochondrial FA oxidation (+120%, P < 0.001). Training had no effect on muscle triacylglycerol content; however, there was a trend for training to reduce both the total diacylglcyerol (DAG) content (-15%, P = 0.06) and the saturated DAG-FA species (-27%, P = 0.06). Training reduced both total ceramide content (-42%, P = 0.01) and the saturated ceramide species (-32%, P < 0.05). These findings suggest that the improved capacity for mitochondrial FA uptake and oxidation leads not only to a reduction in muscle lipid content but also a to change in the saturation status of lipids, which may, at least in part, provide a mechanism for the enhanced insulin action observed with endurance training in obese individuals.
Rigid Dipeptide Mimics:  Synthesis of Enantiopure 5- and 7-Benzyl and 5,7-Dibenzyl Indolizidinone Amino Acids via Enolization and Alkylation of δ-Oxo α,ω-Di-[<i>N</i>-(9-(9-phenylfluorenyl))amino]azelate Esters (1998)

Azabicyclo[X.Y.0]alkane amino acids are tools for constructing mimics of peptide structure and templates for generating combinatorial libraries for drug discovery. Our methodology for synthesizing these conformationally rigid dipeptides has been elaborated such that alkyl groups can be appended onto the heterocycle to generate mimics of peptide backbone and side-chain structure. Inexpensive glutamic acid was employed as chiral educt in a Claisen condensation/ketone alkylation/reductive amination/lactam cyclization sequence that furnished alkyl-branched azabicyclo[4.3.0]alkane amino acid. Enantiopure 5-benzyl-, 7-benzyl-, and 5,7-dibenzylindolizidinone amino acids 2-4 were stereoselectively synthesized via efficient reaction sequences featuring the alkylation of di-tert-butyl alpha,omega-di-[N-(PhF)amino]azelate delta-ketone 5. A variety of alkyl halides were readily added to the enolate of ketone 5 to provide mono- and dialkylated ketones 6 and 7. Hydride additions to 6 and 7, methanesulfonations, and intramolecular S(N)2 displacements by the PhF amine gave 5-alkylprolines that were converted by lactam cyclizations into 7- and 5-benzyl-, as well as 5,7-dibenzyl-2-oxo-3-N-(BOC)amino-1-azabicyclo[4.3.0]nonane-9-carboxylate methyl esters 10, 11, and 14. Epimerization of the alkyl-branched stereocenter via an iminium-enaminium equilibrium proved effective for controlling diastereoselectivity in reductive aminations with 6 and 7 in order to furnish 5-alkylprolines that were similarly converted to 7- benzyl- and 5,7-dibenzylindolizidinone N-(BOC)amino esters 10 and 14. Ester hydrolysis with hydroxide ion and potassium trimethylsilanolate then gave enantiopure indolizidinone amino acids 2-4. Epimerization at C-9 of benzylindolizidinone amino esters was also used to provide alternative diastereomers of 10, 11, and 14. This practical methodology for introducing side-chain groups onto the heterocycle with regioselective and diastereoselective control is designed to enhance the use of alkyl-branched azabicycloalkane amino acids for the exploration of conformation-activity relationships of various biologically active peptides.
A stochastic genetic algorithm for dynamic load balancing in distributed systems (2002)

This paper presents a genetic algorithm (GA) for stochastic environments and its application to dynamic load balancing in distributed systems. We have proposed a stochastic genetic algorithm (StGA) which has an evaluation mechanism for fitness values based on the reinforcement learning in order to adapt to stochastic environments. We apply the StGA to the decision phase of task migration requests in dynamic load balancing, and we realize a task distribution system based on the StGA in a local area network which consists of UNIX workstations.
Geometry, kinetics, and short length effects of electromigration in Mn doped Cu interconnects at the 32nm technology node (2012)

Mn doping in Cu seed has been used to improve EM performance at the 32nm technology node. This paper will show that on an optimized process with CuMn there were different degrees of EM enhancement for geometric variations including line width and electron flow direction. In addition, kinetics experiments on several geometries resulted in activation energies in the range of 0.95-1.33eV. Finally, the Blech threshold (jL)c=338mA/um was derived from the experimental data on various line lengths and current densities.
Effect of dietary N-3 fatty acids upon the phospholipid molecular species of the monkey retina. (1994)

Diets of differing n-3 fatty acid content had profound qualitative and quantitative effects on the molecular species of retinal phospholipids, and the replacement of 22:6(n-3) by 22:5(n-6) in the retinas of n-3 deficient monkeys was asymmetric and functionally incomplete.
Sensory Dysfunction Associated With Repetitive Strain Injuries of Tendinitis and Focal Hand Dystonia: A Comparative Study (1996)

Repetitive strain injuries are reaching epidemic levels among workers who perform heavy schedules of rapid alternating movements (eg., computer programmers, data entry workers) or repetitive, sustained, coordinated movements (eg., editors, writers, salespeople). The purpose of this study was to determine if patients with repetitive strain injury demonstrated degraded sensory motor performance with their hands. Sixty age-matched adults were recruited, with 15 each assigned to a healthy adult control group, a healthy musician control group, a tendinitis group, or a focal dystonia group. Four sensory motor subtests from the Sensory Integration and Praxis Test were given to the subjects according to a standardized protocol. Using multiple one-factor analyses of variance in the parametric or nonparametric mode followed by post hoc pairwise testing, no significant differences were found between the healthy controls and the musician controls. On the test of kinesthesia, using the left hand, subjects with tendinitis performed significantly worse than controls and subjects with focal dystonia. Compared with controls, subjects with focal dystonia did significantly worse on graphesthesia and manual form perception (part 1 and part 2). Subjects with focal dystonia also did significantly worse than subjects with tendinitis when using the left hand on graphesthesia and manual form perception (part 2). When treating patients with repetitive strain injury, discriminative sensory motor skills must be carefully assessed and may need to be addressed as part of an effective treatment program.
Initial stages of few-layer graphene growth by microwave plasma-enhanced chemical vapour deposition (2010)

A promising method for the production of few-layer graphene (FLG) is microwave plasma-enhanced chemical vapour deposition (MW PECVD). However, the growth mechanism of PECVD-synthesized FLG is not completely understood. The aim of this work was to investigate the initial stages of the growth process of FLG deposited by MW PECVD on several substrates (quartz, silicon, platinum). The deposited thin films were characterized by angle-resolved x-ray photoelectron spectroscopy (ARXPS), electron backscattered diffraction (EBSD), scanning electron microscopy (SEM) and x-ray diffraction (XRD). It was found that the initial stages of the deposition were different for the three chosen substrate materials. However, the fully grown FLG layers were similar for all substrates.
Self-depleted T-gate Schottky barrier tunneling FET with low average subthreshold slope and high I<inf>ON</inf>/I<inf>OFF</inf> by gate configuration and barrier modulation (2011)

In this paper, a novel silicon-based T-gate Schottky barrier tunneling FET (TSB-TFET) is proposed and experimentally demonstrated. With enhanced electric field at source side through gate configuration for steeper subthreshold slope (SS), the device with self-depleted structure can effectively suppress the leakage current and simultaneously achieve the dominant Schottky barrier tunneling current for high ON-current without area penalty, which can alleviate the problems in silicon TFET. In addition, the proposed TSB-TFET can have comparable DIBL effect and reduced gate-to-drain capacitance compared with traditional TFET. Further device optimization is experimentally achieved by extended multi-finger gate configuration of the same footprint and barrier modulation by dopant segregation Schottky technology. With compatible bulk CMOS technology, the fabricated device can achieve steep SS over almost 5 decades of current, as well as high I <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">ON</sub> /I <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">OFF</sub> ratio (~10 <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">7</sup> ). The proposed device with high compatibility is very promising for future low power system applications.
Examination of a cored hydraulic fracture in a deep gas well (1991)

A hydraulic fracture stimulation conducted during 1983--1984 in non-marine, deltaic, Mesaverde strata at a depth of 7100 ft (2164 m) was cored in a deviated well in 1990. The observed fracture consists of two fracture intervals, both containing multiple fracture strands (30 and 8, respectively). While the core had separated across many of the fracture strands during coring, the rock remained intact across 20 of the strands, preserving materials within the fractures. Nine of the remaining intact strands were split open, revealing abundant gel residue on the surfaces of every fracture examined. Of 7 strands associated with major bedding planes, 4 displayed offsets of 1--3 mm at the planes and 3 strands had their growth terminated at the planes, showing the importance of bedding (petrophysical heterogeneities) on fracture propagation. Implications of all these findings for hydraulic fracture design and analysis are also addressed. 55 refs., 9 figs.
The Development of an At-Risk Biosensor for Cardiovascular Disease (2012)

Cardiovascular disease (CVD) is a leading cause of death worldwide. Several biomarkers have been found useful in diagnosis and management of CVD, so there is an enormous potential utility for a point-of-care biosensor capable of measuring the entire panel of CVD biomarkers on demand. This paper presents one potential component of such a biosensor, in the form of an electrochemical impedance spectroscopy (EIS)-based measurement method for one such CVD biomarker, neutrophil gelatinaseassociated lipocalin (NGAL). In this study, an antibodyfunctionalized gold disk electrode is shown to detect NGAL in blood diluted to 10% concentration, with a slope of 5.6824 ohms/LOG (ng/mL) and an R2 of 0.97 (n = 3) at 1.758 kHz. These results show the feasibility of an EISbased point-of-care biosensor for CVD markers. Future work will include expanding the method demonstrated here to cover other CVD biomarkers and integrating multiple markers into a single sensor device.
The role of sulphenate esters in sulphoxide photoracemization (1970)

A. G. Schultz and R. H. Schlessinger, J. Chem. Soc. D, 1970, 1294 DOI: 10.1039/C29700001294
ORE, a Eukaryotic Minimal Essential Osmotic Response Element (1996)

Organisms, almost universally, adapt to hyperosmotic stress through increased accumulation of organic osmolytes but the molecular mechanisms have only begun to be addressed. Among mammalian tissues, renal medullary cells are uniquely exposed to extreme hyperosmotic stress. Sorbitol, synthesized through aldose reductase, is a predominant osmolyte induced under hyperosmotic conditions in renal cells. Using a rabbit renal cell line, we originally demonstrated that hyperosmotic stress induces transcription of the aldose reductase gene. Recently, we cloned the rabbit aldose reductase gene, characterized its structure, and found the first evidence of an osmotic response region in a eukaryotic gene. Now, we have progressively subdivided this 3221-base pair (bp) region into discrete fragments in reporter gene constructs. Thereby, we have functionally defined the smallest sequence able to confer hyperosmotic response on a downstream gene independent of other putative cis-elements, that is, a minimal essential osmotic response element (ORE). The sequence of the ORE is CGGAAAATCAC(C) (bp -1105/-1094). A 17-bp fragment (-1108/-1092) containing the ORE used as a probe in electrophoretic mobility shift assays suggests hyperosmotic induction of a slowly migrating band. Isolation of trans-acting factor(s) and characterization of their interaction with the ORE should elucidate the basic mechanisms for regulation of gene expression by hyperosmotic stress.
Organic Thin-Film Solar Cells Using Electron-Donating Perylene Tetracarboxylic Acid Derivatives (2009)

Various electron-donating amino groups were introduced into the perylene core of perylene tetracarboxylic acid derivatives (PTCs) to address the potential use in organic solar cells. Broad absorptions of the PTC solutions in the visible to near-infrared (NIR) region suggest that PTCs are promising light-harvesting molecules for solar cells. Electrochemical measurements reveal that the introduction of the electron-donating amino groups makes the energy level of the highest occupied molecular orbital (HOMO) shallow, imparting electron-rich characteristics to the PTCs. The electronic properties of the PTCs are studied on the basis of quantum chemical calculations. The results show that the variation of the amino groups has a significant influence on the HOMO level, while the lowest unoccupied molecular orbital (LUMO) level is relatively sensitive to the electronegativity of the PTC terminal atoms. The PTC thin films exhibit broad absorption bands in the visible to NIR region, as for the PTC solutions, and possess relatively shallow HOMO and LUMO energies that are higher or comparable to those of fullerene C60. These excellent properties encouraged us to employ amine-substituted PTCs as electron donors in a thin film solar cell with C60 as an n-type semiconductor. Photovoltaic devices with a structure of indium tin oxide (ITO)/PTCs/C60/bathocuproine (BCP)/Al were fabricated by spin-coating PTCs on an ITO electrode. The devices with perylene tetracarboxylic acid diimides (PTCDIs), bearing highly basic amino groups (Py-PTCDI, Me2N-PTCDI, and Ph2N-PTCDI), exhibit the higher power conversion efficiencies than those with carbazoyl PTCDI (Cz-PTCDI) and perylene tetracarboxylic acid dianhydrides (PTCDAs). The higher device performance originates from the efficient electron transfer from the PTCs to C60 as the results of the relatively shallow HOMO and LUMO levels of the PTCs bearing the highly basic amino groups. The dependence of the device performance on the PTC film thickness indicates that the introduction of diphenylamino groups on the perylene core suppresses the nonradiative decay of the exciton without decreasing the hole mobility. These results will provide important information for the molecular design of post PTC derivatives.
TMR crystal controlled clock (1981)

Triple modular redundant circuit for clock generation has been fabricated using CMOS gates and the test results for different types of single fault conditions are presented.
Determination of genome size, macrorestriction pattern polymorphism, and nonpigmentation-specific deletion in Yersinia pestis by pulsed-field gel electrophoresis (1992)

Of 16 restriction endonucleases known to hydrolyze rare 6- or 8-base recognition sequences that were tested, only SpeI, NotI, AscI, and SfiI generated fragments of chromosomal DNA from Yersinia pestis, the causative agent of bubonic plague, of sufficient length to permit physical analysis by pulsed-field gel electrophoresis (PFGE). Of the individual bands detected after single-dimensional PFGE of these digests, the largest sum was obtained with SpeI (3,575.6 +/- 114.6 kb). Of these 41 bands, 3 were found to contain comigrating fragments, as judged by the results of two-dimensional SpeI-ApaI PFGE; addition of these fragments and the three plasmids of the species yielded a refined estimate of 4,397.9 +/- 134.6 kb for the genome. This size was similar for eight strains of diverse geographical origin that exhibited distinct DNA macrorestriction patterns closely related to their biotypes. The high-frequency chromosomal deletion known to exist in nonpigmented mutants (unable to assimilate Fe3+ at 37 degrees C or store hemin at 26 degrees C) was shown by two-dimensional PFGE analysis with SpeI and ApaI or with SfiI and SpeI to be 92.5 and 106 kb in size, respectively. The endpoints of this deletion were precise, and its size was more than sufficient to encode the eight known peptides reported to be absent in nonpigmented mutants. This deletion had not occurred (but was able to do so) in a rare mutant capable of hemin storage but not iron transport.
Hydrocarbon versus Fluorocarbon in the Electrodeposition of Superhydrophobic Polymer Films (2010)

To elaborate on superhydrophobic surfaces, we report the electrochemical synthesis, surface morphology, and wettability of hydrocarbon conductive polymer films obtained by the electrodeposition of polythiophene, poly(3,4-ethylenedioxythiophene) (i.e., PEDOT), and poly(3,4-ethylenedioxypyrrole) (i.e., PEDOP) derivatives. Highly hydrophobic films were obtained from n-C(14)H(29) and n-C(8)H(17) chains in the cases of polythiophenes and PEDOP, respectively. By contrast, superhydrophobic films were formed by the deposition of PEDOT substituted with n-C(10)H(21) chains (PEDOT-methyl undecanoate): static contact angle ≈ 160.6°, hysteresis ≈ 2°, and sliding angle ≈ 3°. Their surface properties were compared to those of previously reported fluorinated analogues. The water-repellent properties of PEDOT-methyl undecanoate were similar to the best surface properties obtained with fluorinated monomers. Even if the main approach for the chemical factor to build up superhydrophobic surfaces is via a coating of a fluorinated compound, this work confirms that the formation of fractal surfaces is able to achieve super-anti-wetting properties within a hydrocarbon series (less expensive with a favorable ecotoxic approach), and it opens a new path to bioinspired surfaces.
Cost implications of feedstock combinations for community sized biodiesel production (1993)

Biodiesel can be processed from oilseeds or animal fats and used in unmodified diesel engines. This fuel has been produced commercially in Europe for three years. Research indicates that biodiesel can replace diesel fuel without causing harmful effects to an unmodified engine and can reduce harmful emissions . Some European biodiesel plants operate at the community level effectively supplying both fuel and animal feeds. This study examines multiple feedstocks that could be utilized by a community sized biodiesel plant. The model plant used is a 500,000 gallon processing facility. The model plant is assumed to be installed in an existing grain handling facility or feed mill. Animal fats would be purchased from outside sources and oilseeds would be provided by area producers. Producers would retain ownership of the oilseeds and pay a processing fee to the cooperative. Oilseeds would be extruded before being separated into meal and crude oil. The crude oil would be esterified into biodiesel using continuous flow esterification technology. This study concludes under specific conditions, biodiesel can be processed economically at the community level. The results indicate that without farm program benefits to minor oilseeds, soybeans are the most economic feedstock to use in a community basedmore » operation. Realistic price information suggests that biodiesel (from soybeans) could be produced for $1.26 per gallon. If producers participate in government programs and are capable of growing minor oilseeds, canola may represent a better feedstock than soybeans. Achieving the lowest costs of production depends on the value assigned to co-product credits such as oilseed meal. The more producers pay for high protein meal for their livestock and poultry, the lower the residual price of biodiesel.« less
Systems analysis of phosphate-limitation-induced lipid accumulation by the oleaginous yeast Rhodosporidium toruloides (2018)

Our data suggest that Pi limitation activates Pi-related metabolism, RNA degradation, and TAG biosynthesis while inhibits ribosome biosynthesis and TCA cycle, leading to enhanced carbon fluxes into lipids. The information greatly enriches our understanding on microbial oleaginicity and Pi-related metabolism. Importantly, systems data may facilitate designing advanced cell factories for production of lipids and related oleochemicals.
Minkowski Sum Construction and other Applications of Arrangements of Geodesic Arcs on the Sphere (2009)

We present two exact implementations of efficient output-sensitive algorithms that compute Minkowski sums of two convex polyhedra in 3D. We do not assume general position. Namely, we handle degenerate input, and produce exact results. We provide a tight bound on the exact maximum complexity of Minkowski sums of polytopes in 3D in terms of the number of facets of the summand polytopes. The algorithms employ variants of a data structure that represents arrangements embedded on two-dimensional parametric surfaces in 3D, and they make use of many operations applied to arrangements in these representations. We have developed software components that support the arrangement data-structure variants and the operations applied to them. These software components are generic, as they can be instantiated with any number type. However, our algorithms require only (exact) rational arithmetic. These software components together with exact rational-arithmetic enable a robust, efficient, and elegant implementation of the Minkowski-sum constructions and the related applications. These software components are provided through a package of the Computational Geometry Algorithm Library (CGAL) called Arrangement_on_surface_2. We also present exact implementations of other applications that exploit arrangements of arcs of great circles embedded on the sphere. We use them as basic blocks in an exact implementation of an efficient algorithm that partitions an assembly of polyhedra in 3D with two hands using infinite translations. This application distinctly shows the importance of exact computation, as imprecise computation might result with dismissal of valid partitioning-motions.