gebhart/patrepeval huggingface dataset:
Protective Effect of FK506 on Ischemia/Reperfusion-Induced Myocardial Damage in Canine Heart (1993)

We investigated the cardioprotective effect of FK506, a newly developed immunosuppressive agent, on ischemia-reperfusion-induced myocardial damage and the inhibitory effect of FK506 on superoxide radical formation by neutrophils. Open-chest anesthetized dogs were divided into two groups: group 1, 2-h occlusion of the coronary artery followed by 1-h reperfusion; and group 2, 2-h occlusion followed by 1-h reperfusion with preadministration of FK506 (0.5 mg/kg). After reperfusion, heart mitochondria were prepared from the normal and reperfused areas and mitochondrial function and mitochondrial GSH (the reduced form of glutathione) and GSSG (the oxidized form of glutathione) concentrations were measured. In addition, neutrophils were collected from normal healthy dogs, and the inhibitory effect of FK506 on superoxide radical formation by neutrophils was also investigated. One-hour reperfusion after 2-h coronary occlusion induced significant mitochondrial dysfunction associated with a marked depletion of mitochondrial GSH concentration. FK506 reduced mitochondrial dysfunction, depletion of mitochondrial GSH concentration, and development of reperfusion arrhythmias. FK506 also reduced stimulant-induced superoxide radical formation by normal neutrophils dose dependently. Radical scavenging activity decreased in association with reperfusion, and FK506 reduced superoxide radical formation by neutrophils, which might contribute to lessening ischemia-reperfusion damage.
Distribution of 5,5-dimethyl-2,4-oxazolidinedione (DMO) in intraocular fluids. V. Effect of plasma level, probenecid, and dichlorphenamide on time course. (1968)

The kinetics of penetration of DMO into intraocular fluids at different plasma levels or after the administration of probenecid or dichlorphenamide have been studied. Many similarities were found to other systems which have been studied. The data provided further evidence for the probability that DMO is secreted out of the eye and that this mechanism is inhibited by probenecid and dichlorphenamide. D, MO penetrates most of the tissues studied by a diffusional process. 1 ' - Although DMO should be in excess in the anterior intraocular fluids of the rabbit because the pH of these fluids is alkaline relative to that of plasma, an excess is seen only when the plasma level is high or the animal has been treated with probenecid or dichlorphenamide. 3 ' l It was of interest to conduct time-course studies under these various conditions to obtain further information concerning the mechanisms of the penetration of DMO into intraocular fluids. Methods
<i>BRAF</i> V600E mutations in urine and plasma cell-free DNA from patients with Erdheim-Chester disease (2014)

Erdheim-Chester disease (ECD) is a rare histiocytosis with a high prevalence of BRAF V600E mutation (>50% of patients). Patients with BRAF-mutant ECD can respond to BRAF inhibitors. Unfortunately, the lack of adequate archival tissue often precludes BRAF testing. We hypothesized that cell-free DNA (cfDNA) from plasma or urine can offer an alternative source of biologic material for testing. We tested for BRAF V600E mutation in cfDNA from the plasma and urine of 6 ECD patients. In patients with available archival tissue, the result of BRAF mutation analysis was concordant with plasma and urine cfDNA results in all 3 patients (100% agreement, kappa 1.00). In all 6 patients, BRAF mutation analysis of plasma and urine cfDNA was concordant in 5 of 6 patients (83% agreement, kappa 0.67). Testing for BRAF V600E mutation in plasma and urine cfDNA should be further investigated as an alternative to archival tissue mutation analysis.
Stochastic resonance as a collective property of ion channel assemblies (2001)

By use of a stochastic generalization of the Hodgkin-Huxley model we investigate both the phenomena of stochastic resonance (SR) and coherence resonance (CR) in variable size patches of an excitable cell membrane. Our focus is on the challenge how internal noise stemming from individual ion channels does affect collective properties of the whole ensemble. We investigate both an unperturbed situation with no applied stimuli and one in which the membrane is stimulated externally by a periodic signal and additional external noise. For the nondriven case, we demonstrate the existence of an optimal size of the membrane patch for which the internal noise causes a most regular spike activity. This phenomenon shall be termed intrinsic CR. In presence of an applied periodic stimulus we demonstrate that the signal-to-noise ratio (SNR) exhibits SR vs. decreasing patch size, or vs. increasing internal noise strength, respectively. Moreover, we demonstrate that conventional SR vs. the external noise intensity occurs only for sufficiently large membrane patches, when the intensity of internal noise is below its optimal level. Thus, biological SR seemingly is rooted in the collective properties of large ion channel ensembles rather than in the individual stochastic dynamics of single ion channels.
A Pedagogy of Multiliteracies: Designing Social Futures (1996)

In this article, the New London Group presents a theoretical overview of the connections between the changing social environment facing students and teachers and a new approach to literacy pedagogy that they call
Quality of the Trace Element Analysis: Sample Preparation Steps (2011)

Current status of elemental analysis performed using atomic spectroscopy techniques is to reach the best results in the shortest time and with minimal contamination and reagent consumption. Various spectroscopic methods such as flameand graphite furnace atomic absorption spectrometry (Fand GF-AAS), inductively coupled plasma optical emission spectrometry (ICP-OES) or inductively coupled plasma mass spectrometry (ICP-MS) have been used for many years for determination of elements, since they met needs required in analytical applications. Constant progress in detector technology can still been observed, e.g. in terms of lowering quantification limits. Despite these advantages, quality of results does not follow the same tendency and sample preparation is recognized to be a critical point and the most important error source in modern analytical method development. This is especially true for solid samples that have to be brought into solution before measurements. It is dictated by instrumentation requirements dedicated to analysis of liquid samples. Determination of analyte concentrations in solid materials is not an easy task and several factors should be considered in order to minimize uncertainty in sample preparation and to achieve real objectives of analysis. It includes sample type and its matrix composition responsible mainly for the degree of difficulties during sample preparation and analyte determination. Therefore, the good choice of sample treatment and confidence of its application become a key ensuring to obtain reliable results.
An End-to-end Oxford Nanopore Basecaller Using Convolution-augmented Transformer (2020)

Abstract Oxford Nanopore sequencing is fastly becoming an active field in genomics, and it’s critical to basecall nucleotide sequences from the complex electrical signals. Many efforts have been devoted to developing new basecalling tools over the years. However, the basecalled reads still suffer from a high error rate and slow speed. Here, we developed an open-source basecalling method, CATCaller, by simultaneously capturing global context through Attention and modeling local dependencies through dynamic convolution. The method was shown to consistently outper-form the ONT default basecaller Albacore, Guppy, and a recently developed attention-based method SACall in read accuracy. More importantly, our method is fast through a heterogeneously computational model to integrate both CPUs and GPUs. When compared to SACall, the method is nearly 4 times faster on a single GPU, and is highly scalable in parallelization with a further speedup of 3.3 on a four-GPU node.
Determination of Hydrogen in Alkali Metals by Isotope Dilution Method (1959)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTDetermination of Hydrogen in Alkali Metals by Isotope Dilution MethodB. D. HoltCite this: Anal. Chem. 1959, 31, 1, 51–54Publication Date (Print):January 1, 1959Publication History Published online1 May 2002Published inissue 1 January 1959https://pubs.acs.org/doi/10.1021/ac60145a011https://doi.org/10.1021/ac60145a011research-articleACS PublicationsRequest reuse permissionsArticle Views19Altmetric-Citations8LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Red cell and plasma folate, folate consumption, and the risk of colorectal adenomatous polyps. (1996)

Epidemiological and experimental evidence suggests that dietary folate may protect against colorectal carcinogenesis. The epidemiological relationship between a biochemical measure of folate status and colorectal neoplasia in a sizeable and generally healthy population does not yet appear to have been reported. We conducted a case-control study of the relationships among red cell folate, plasma folate, folate intake, and adenomatous polyps, intermediate markers for colorectal cancer. During 1991-1993, fasting blood samples were assayed and dietary and nondietary risk factor questionnaires were administered to men and women ages 50-75 years who had a free sigmoidoscopy at a health maintenance organization. We analyzed data from 682 subjects (332 cases and 350 controls), controlling for potential confounding by sex, age, sigmoidoscopy date, and clinic. For red cell folate levels 160 ng/ml (363 nmol/liter) or more, compared to lower levels, the odds ratio was 0.76 [95% confidence interval (CI) = 0.53-1.08]. For men, the corresponding odds ratio was 0.53 (CI = 0.32-0.87); for women, it was 1.16 (CI = 0.67-2.00). Results were essentially unchanged when adjusted for levels of blood nutrients and other potential confounding variables. Plasma folate and folate intake results were similar to red cell folate results, but the associations with polyps were weaker. Results are consistent with a protective effect of red cell folate concentration against the development of colorectal polyps, at least in men. A folate effect may depend on sex-specific interactions with other nutritional or physiological factors.
Toxicity of Hemoglobin Solutions: Hemoglobin is a Lipopolysaccharide (Lps) Binding Protein which Enhances Lps Biological Activity (1994)

Administration of alpha alpha-crosslinked stroma-free hemoglobin (SFH) as a cell-free resuscitation fluid is associated with multiple organ toxicities. Many of these toxicities are characteristic of the pathophysiological effects of bacterial endotoxins (lipopolysaccharide, LPS). To better understand the potential role of LPS in the observed in vivo toxicities of SFH, we examined mixtures of SFH and E. coli LPS for evidence of LPS-SFH complex formation. LPS-SFH complexes were demonstrated by three techniques: ultrafiltration through 300 kDa cut-off membranes, which distinguished LPS in complexes (87-89% < 300 kDa) from LPS alone (90% > 300 kDa); density centrifugation through 5% sucrose, which distinguished denser LPS alone from LPS-SFH complexes; and precipitation by 67% ethanol, which demonstrated 2-3 fold increased precipitability of complexes compared to SFH alone. Interaction of LPS with SFH was also associated with markedly increased biological activity of LPS, as manifested by enhancement of LPS activation of Limulus amebocyte lysate (LAL), increased release of human mononuclear cell tissue factor, and enhanced production of cultured human endothelial cell tissue factor. These results demonstrated that hemoglobin can serve as an endotoxin binding protein, and that this interaction results in the alteration of several LPS physical characteristics and enhancement of LPS biological activities.
<i>Meis1</i>, a <i>PBX1</i>-Related Homeobox Gene Involved in Myeloid Leukemia in BXH-2 Mice (1995)

Leukemia results from the accumulation of multiple genetic alterations that disrupt the control mechanisms of normal growth and differentiation. The use of inbred mouse strains that develop leukemia has greatly facilitated the identification of genes that contribute to the neoplastic transformation of hematopoietic cells. BXH-2 mice develop myeloid leukemia as a result of the expression of an ecotropic murine leukemia virus that acts as an insertional mutagen to alter the expression of cellular proto-oncogenes. We report the isolation of a new locus, Meis1, that serves as a site of viral integration in 15% of the tumors arising in BXH-2 mice. Meis1 was mapped to a distinct location on proximal mouse chromosome 11, suggesting that it represents a novel locus. Analysis of somatic cell hybrids segregating human chromosomes allowed localization of MEIS1 to human chromosome 2p23-p12, in a region known to contain translocations found in human leukemias. Northern (RNA) blot analysis demonstrated that a Meis1 probe detected a 3.8-kb mRNA present in all BXH-2 tumors, whereas tumors containing integrations at the Meis1 locus expressed an additional truncated transcript. A Meis1 cDNA clone that encoded a novel member of the homeobox gene family was identified. The homeodomain of Meis1 is most closely related to those of the PBX/exd family of homeobox protein-encoding genes, suggesting that Meis1 functions in a similar fashion by cooperative binding to a distinct subset of HOX proteins. Collectively, these results indicate that altered expression of the homeobox gene Meis1 may be one of the events that lead to tumor formation in BXH-2 mice.
Immunologic suppression after oral administration of antigen. I. Specific suppressor cells formed in rat Peyer's patches after oral administration of sheep erythrocytes and their systemic migration. (1978)

Rats given 10(10) sheep erythrocytes (SRBC) orally were found to contain specific suppressor cells to SRBC in their Peyer's patches (PP) and mesenteric lymph nodes (MLN) after 2 days of feeding. After 4 days of feeding, similar suppressor cells were found in the thymus and spleen, but they were missing in the PP or MLN. These suppressor cells effectively blocked IgM and IgG plaque-forming cell responses to SRBC in Mishell-Dutton cultures and delayed-type-hypersensitivity responses to SRBC when transferred to syngeneic recipients, but they did not affect responses to horse erythrocytes. The orally induced specific suppressor cells appeared to be T2 cells since their activity was eliminated by in vivo treatment of SRBC-fed rats with anti-rat lymphocyte serum but not by adult thymectomy. Because carrageenan partially relieved the suppression observed in culture, the actual suppressive mechanism may also involve a macrophage.
Non-invasive, interactive, stylized rendering (2001)

Article Share on Non-invasive, interactive, stylized rendering Authors: Alex Mohr Univ. of Wisconsin, Madison Univ. of Wisconsin, MadisonView Profile , Michael Gleicher Univ. of Wisconsin, Madison Univ. of Wisconsin, MadisonView Profile Authors Info & Claims I3D '01: Proceedings of the 2001 symposium on Interactive 3D graphicsMarch 2001Pages 175–178https://doi.org/10.1145/364338.364392Published:01 March 2001Publication History 33citation603DownloadsMetricsTotal Citations33Total Downloads603Last 12 Months12Last 6 weeks0 Get Citation AlertsNew Citation Alert added!This alert has been successfully added and will be sent to:You will be notified whenever a record that you have chosen has been cited.To manage your alert preferences, click on the button below.Manage my AlertsNew Citation Alert!Please log in to your account Save to BinderSave to BinderCreate a New BinderNameCancelCreateExport CitationPublisher SiteGet Access
Equilibrium and non-equilibrium free carrier dynamics in 2D Ti <sub>3</sub> C <sub>2</sub> T <sub> <i>x</i> </sub> MXenes: THz spectroscopy study (2018)

MXenes is an emerging class of 2D transition metal carbides, nitrides and carbonitrides which exhibit large conductivity, ultrahigh volumetric capacitance, high threshold for light-induced damage and nonlinear optical transmittance, making them attractive candidates for a variety of optoelectronic and electrochemical applications. Here, we report on equilibrium and non-equilibrium free carrier dynamics of Ti3C2Tx gleaned from THz spectroscopic studies for the first time. Ti3C2Tx showed high (~2 × 1021 cm−3) intrinsic charge carrier density and relatively high (~34 cm2 V−1 s−1) mobility of carriers with an exceptionally large, ~46 000 cm−1 absorption in the THz range, which suggests that Ti3C2Tx is well suited for THz detection. We also demonstrate that Ti3C2Tx conductivity and THz transmission can be manipulated by photoexcitation, as absorption of near-infrared, 800 nm pulses is found to cause transient suppression of the conductivity that recovers over hundreds of picoseconds. The possibility of control over THz transmission and conductivity by photoexcitation suggests the promise for application of Ti3C2Tx Mxenes in THz modulation devices and variable electromagnetic shielding.
From Wheels to Wings with Evolutionary Spiking Circuits (2005)

We give an overview of the EPFL indoor flying project, whose goal is to evolve neural controllers for autonomous, adaptive, indoor micro-flyers. Indoor flight is still a challenge because it requires miniaturization, energy efficiency, and control of nonlinear flight dynamics. This ongoing project consists of developing a flying, vision-based micro-robot, a bio-inspired controller composed of adaptive spiking neurons directly mapped into digital microcontrollers, and a method to evolve such a neural controller without human intervention. This article describes the motivation and methodology used to reach our goal as well as the results of a number of preliminary experiments on vision-based wheeled and flying robots.
Solar-to-hydrogen efficiency: shining light on photoelectrochemical device performance (2015)

Uncontrolled spectral mismatch of laboratory light sources and inappropriate area definitions induce vast inaccuracies for solar-to-hydrogen efficiency measurement and reporting.
Interactions between Asphaltenes and Naphthenic Acids (2002)

Asphaltenes separated from two different North Sea oils were studied upon addition of two kinds of naphthenic acids by employing PFG-SE NMR (pulsed field gradient-spin echo nuclear magnetic resonance) and NIR (near-infrared) spectroscopy. The results indicated that there were interactions between asphaltenes and naphthenic acids. It also appeared as if the tendency of the acids to interact with asphaltenes depended on the asphaltene type. Furthermore, a concentration series of one of the asphaltenes was prepared, and a dramatic decrease in diffusion coefficients upon increased concentration was observed. This suggests that the asphaltenes studied were prone to self-associate in toluene-d8.
Towards Online Iris and Periocular Recognition Under Relaxed Imaging Constraints (2013)

Online iris recognition using distantly acquired images in a less imaging constrained environment requires the development of a efficient iris segmentation approach and recognition strategy that can exploit multiple features available for the potential identification. This paper presents an effective solution toward addressing such a problem. The developed iris segmentation approach exploits a random walker algorithm to efficiently estimate coarsely segmented iris images. These coarsely segmented iris images are postprocessed using a sequence of operations that can effectively improve the segmentation accuracy. The robustness of the proposed iris segmentation approach is ascertained by providing comparison with other state-of-the-art algorithms using publicly available UBIRIS.v2, FRGC, and CASIA.v4-distance databases. Our experimental results achieve improvement of 9.5%, 4.3%, and 25.7% in the average segmentation accuracy, respectively, for the UBIRIS.v2, FRGC, and CASIA.v4-distance databases, as compared with most competing approaches. We also exploit the simultaneously extracted periocular features to achieve significant performance improvement. The joint segmentation and combination strategy suggest promising results and achieve average improvement of 132.3%, 7.45%, and 17.5% in the recognition performance, respectively, from the UBIRIS.v2, FRGC, and CASIA.v4-distance databases, as compared with the related competing approaches.
XIV.—Studies on Reproduction in the Albino Mouse. II. Contributions on the Maturation of the Sperm Cells (1940)

The morphological characters of mammalian sperm cells taken from the ductuli efferentes differ only slightly from the sperm derived from the vas deferens . However, it is known that spermatozoa from the caput epididymis , when kept in physiological salt solution, quickly become immotile, whereas those from the cauda epididymis retain their motility for a long time (Moore, 1928). During the slow passage through the epididymis the spermatozoa undergo a physiological process of maturation, which is said to occur under the influence of the epithelium of the epididymis and to result in a lesser susceptibility on the part of the spermatozoa to extraneous influences (Braus and Redenz, 1924; Redenz, 1926; and Lanz, 1929). Other authors maintain that this maturation of the spermatozoon is not conditioned by environmental influences (Young, 1931). In any case the spermatozoa achieve full functional ability only after they have reached the cauda epididymis and the vas deferens . These are the spermatozoa which enter the female genital tract at copulation, and thus it follows that spermatozoa for artificial insemination in the mouse must be taken from the vas deferens and cauda epididymis .
Optimization of SINR-based Neighbor Cell List for networks with small cells (2013)

In this paper, we propose an optimization of Neighbor Cell List (NCL) management algorithm. The goal is to minimize a number of scanned cells for handover purposes while a call drop rate is not increased. To that end, the NCL is dynamically optimized according to the SINR observed by a User Equipment (UE) from its serving cell. If a UE is in the cell center, only the serving cell is scanned. Contrary, if the UE moves closer to the cell edge, also other cells are inserted to the list of scanned cells. The cells are included in the list based on the probability of handover to these cells. The optimization presented in this paper consists in derivation of the optimal value of the parameters that describes a relation between a handover probability threshold for scanning and SINR measured by the UE. First, we provide analytical analysis of the problem and then we confirm the derived optimal values by means of simulations. The results show the proposed optimization of the NCL management is able to reduce the number of scanned cells significantly while the call drops due to NCL can be eliminated.