gebhart/patrepeval huggingface dataset:
Clinical roundtable monograph. Emerging treatment options for relapsed and refractory multiple myeloma. (2011)

Multiple myeloma is a major hematologic malignancy, with an incidence of over 20,000 new diagnoses in the United States each year. Historically, a lack of effective therapies led to a poor patient prognosis. However, the introduction of new agents over the past decade has improved the treatment landscape for these patients, resulting in improved responses and prolonged progression-free and overall survival. Unfortunately, though, nearly all multiple myeloma patients go on to experience relapsed disease. The definition of this progression has also evolved with a growing understanding of the biology of multiple myeloma as well how the disease responds to these newer agents. While refractory multiple myeloma is considered to be a disease that does not respond to a particular therapy, the new definition of relapsed and refractory multiple myeloma includes patients who show disease progression within 60 days of discontinuing therapy. These new definitions are an important consideration when interpreting both previously reported and ongoing clinical trial data. Another major issue in the management of relapsed and refractory multiple myeloma is how to treat patients after they no longer respond to thalidomide, lenalidomide, and bortezomib. Regarding this issue, a number of novel agents are now in clinical trial development; many of them show indications of significant activity, even in heavily pretreated patients. Thus, the introduction of these newer agents has the potential to again make a major impact on multiple myeloma patient outcomes.
Ischemic Heart Disease and Stroke in Relation to Blood DNA Methylation (2010)

Subjects with prevalent IHD and stroke exhibited lower LINE-1 methylation. In longitudinal analyses, persons with lower LINE-1 methylation were at higher risk for incident ischemic heart disease and stroke, and for total mortality.
Clinical evaluation of the interpulse low resistance microporous membrane oxygenator. (1983)

The Interpulse microporous membrane oxygenator has been used in 100 patients for cardiac surgery. This oxygenator features transverse furrows in the membrane and a back and forth motion of the blood as it flows between the membranes. This pulsing motion causes secondary flows or vortices to occur in the furrows of the membrane. These secondary flows promote mixing of the blood in the film. This oxygenator has been used in a single pump circuit for perfusions for up to 343 minutes at a flow rate up to 5.9 l/min. Oxygen saturation has always been 98% or greater. The pulser rate of the oxygenator influences oxygen transfer, and the pulser rate has been regulated between 80 and 225 pulses per minute to achieve a mean arterial PaO2 of 207 mmHg. Carbon dioxide transfer is affected by the oxygen flow through the device and has been adjusted to between 0.2 and 7 l/min to obtain a mean PaCO2 of 40 mmHg in this series. This device has proved to be safe and effective in perfusions for cardiac surgery.
The Correct Use of “Average” Fluorescence Parameters (1998)

ABSTRACT When more than one fluorophore is present or when one fluorophore displays a multiple exponential decay “average” fluorescence parameters are derived, which can be combined with “average” lifetimes for further interpretation. However, two kinds of average lifetimes are used in this context: the intensity and the amplitude average lifetime. In this paper the different average parameters are carefully analyzed and their “best” combinations are derived. These average parameters are analyzed in the context of external and internal dynamic and static quenching, Föster energy transfer and the calculation of the radiative rate constant. The use of the amplitude average lifetime for the analysis of multiple fluorophore‐containing systems and the detection of interactions is discussed.
Transient immunosuppression by FK506 permits a sustained high-level dystrophin expression after adenovirus-mediated dystrophin minigene transfer to skeletal muscles of adult dystrophic (mdx) mice. (1996)

Adenovirus (AV)-mediated gene transfer into skeletal muscles of adult immune-competent animals has been limited by the fact that a cell-mediated immune attack of the host against transduced muscle fibers prevented efficient long-term transgene expression. More recently, various immunomodulating strategies have been shown to improve the longevity of transgene expression after AV-mediated gene transfer. In this study we treated adult dystrophic (mdx) mice with daily subcutaneous injections of the immunosuppressive drug FK506 (tacrolimus) over 5, 10, 30 and 60 days after AV-mediated dystrophin gene transfer and compared the transduction level with saline-injected mdx controls. We show that daily FK506 treatment after AV-mediated dystrophin gene transfer into adult mdx muscle results in the maintenance of the initial transgene expression for at least 2 months, even when FK506 treatment was discontinued after 1 month. This is in keeping with the marked reduction of inflammatory infiltrates and the reduced activation level (inducible nitric oxide synthase) of macrophages in adenoviral recombinant (AVR)-injected muscles of FK506-treated animals. Moreover, we find that FK506 efficiently suppresses the humoral immune response against both the vector proteins and the transgene protein product (dystrophin). Furthermore, we demonstrate that continuous FK506 treatment over 30 days significantly improves the efficiency of gene transfer when the same vector is readministered to an animal which had been transduced 20 days earlier. In conclusion, the data suggest that sensitization by the initial antigenic load of the AVR application plays a pivotal role in triggering the humoral and cellular immune response of the host, which can be significantly counteracted by relatively short-term immunosuppressive treatment. These findings have important implications for the design of future human trials for gene replacement therapy in Duchenne muscular dystrophy.
Antithrombotic Effect of Two Low Molecular Weight Thrombin Inhibitors and a Low-Molecular Weight Heparin in a Caval Vein Thrombosis Model in the Rat (1997)

A sensitive thrombosis model with a high reproducibility was developed in the rat, utilizing stasis of the caval vein and a standardized surgical trauma as the only thrombogenic stimuli. Since no procoagulant substances were used, the results of the present study might be relevant in a clinical situation. The antithrombotic effect of two recently synthesized low-molecular-weight thrombin inhibitors have been compared to dalteparin, (Fragmin) a low-molecular-weight heparin fragment. Each compound was studied at 8 different doses with 10 rats in each group. On a gravimetric basis, the thrombin inhibitor melagatran was twice as potent as dalteparin (ED50 16 and 33 microg/kg per h, respectively). The second thrombin inhibitor, inogatran, had an intermediate effect, with an ED50 of 24 microg/kg per h. No differences in antithrombotic effect were, however, found when the compounds were compared at anticoagulant equivalent doses (same APTT prolongation). A 50% reduction in the mean thrombus weight was obtained when APTT was prolonged to 1.2 to 1.3 times the pretreatment value.
Plasmonic metasurfaces for efficient phase control in reflection (2013)

We numerically study the optical properties of metal-insulator-metal resonators and metasurfaces, emphasizing the presence of gap-surface plasmon (GSP) resonances and their connection to the optical response. In relation to birefringent metal-backed metasurfaces, we show how a combination of metal nanobrick and nanocross elements allows one to fully control the phase of reflected light for two orthogonal polarizations simultaneously. The approach is exemplified by the design of a gradient birefringent metasurface that reflects two orthogonal polarization states into +2 and -3 diffraction order, respectively, with a reflectivity up to ~ 80% and in a broad wavelength range around the design wavelength of 800 nm. Finally, we introduce the concept of metascatterers, which are wavelength-sized polarization-sensitive scatterers.
Luminescent Lanthanide Helicates Self-Assembled from Ditopic Ligands Bearing Phosphonic Acid or Phosphoester Units (2009)

A series of hexadentate ditopic receptors incorporating benzimidazole moieties have been designed, which are fitted with phosphonic acid or phosphoethylester coordinating units. In addition, poly(oxyethylene) pendants have been introduced on the benzimidazole backbone of two ligands to increase water solubility. The ligands self-assemble with lanthanide ions under stoichiometric conditions, yielding triple-stranded homobimetallic helicates, as ascertained by mass spectrometry and UV-visible titrations. The helicates display large thermodynamic stability, for example, log beta(23) approximately 21-24 for all the Eu(III) complexes. Photophysical measurements reveal sensitization of the metal-centered luminescence in the europium and terbium complexes, which is modulated by the nature of the ligand. Hydration numbers determined by the lifetime method are essentially zero. The Eu((5)D(0)) lifetimes are long and reach values up to 3.2 ms, while quantum yields as high as 25% are obtained in water at pH 7.4. Back transfer limits the sensitization efficiency for Tb(III) luminescence, and both lifetimes and quantum yields are much smaller. The properties of the helicates are discussed with respect to those self-assembled from ligands bearing carboxylate coordinating units.
An Artificial Intelligence Technique for Information and Fact Retrieval: An Application in Medical Knowledge Processing (1991)

Concepts of information retrieval information retrieval systems natural language systems medical information systems clustering algorithms for information processing design decisions and an overview of the SHRIF system the input/output language processor the knowledge base organization the processes of cluster and plane formation the query handler/search facility the SHRIF system in operation. Appendices: a formal definition of the system language sample nodes in the medical knowledge base excerpts from an interactive session.
Leakage Reduction by Thermal Annealing of NiPtSi Silicided Junctions and Anomalous Grain-Incompatible Pt Network (2010)

Using highly reliable damage-free junctions, the effectiveness and limitation of Pt addition for the stabilization of thin NiSi films are accurately specified and practically formulated in terms of the thermally induced leakage. In addition to the thermal leakage, the unexpected emergence of initial leakage is also witnessed and attributed to the emission of Si interstitials during silicidation and the subsequent formation of boron interstitial clusters. Rapid evanescence of the initial leakage by post-annealing is also successfully demonstrated owing to the Pt-induced thermal stabilization. Moreover, unlike other Pt distributions considered so far, Pt atoms are revealed to concentrate in a distinctive manner, forming an anomalous in-layer web-like structure which even extends within single NiSi grains. This grain-incompatible Pt network is thought to be a remnant of Pt-aggregation around grain boundaries of an earlier metal-rich silicide phase (e.g., Ni 2 Si), incorporated and left intact in the final phase (i.e., NiSi). Such intermediate-phase Pt-rearrangement may have interfered with the phase transition sequence and reoriented the final NiSi grains to constitute a crystallographically stable and thermally robust interface structure, resulting in the effective stabilization by Pt addition.
Significant Microbiological Effect of Inhaled Tobramycin in Young Children with Cystic Fibrosis (2003)

We conducted a double-blind, placebo-controlled, multicenter, randomized trial to test the hypothesis that 300 mg of tobramycin solution for inhalation administered twice daily for 28 days would be safe and result in a profound decrease in Pseudomonas aeruginosa (Pa) density from the lower airway of young children with cystic fibrosis. Ninety-eight subjects were to be randomized; however, the trial was stopped early because of evidence of a significant microbiological treatment effect. Twenty-one children under age 6 years were randomized (8 active; 13 placebo) and underwent bronchoalveolar lavage at baseline and on Day 28. There was a significant difference between treatment groups in the reduction in Pa density; no Pa was detected on Day 28 in 8 of 8 active group patients compared with 1 of 13 placebo group patients. We observed no differences between treatment groups for clinical indices, markers of inflammation, or incidence of adverse events. No abnormalities in serum creatinine or audiometry and no episodes of significant bronchospasm were observed in association with active treatment. We conclude that 28 days of tobramycin solution for inhalation of 300 mg twice daily is safe and effective for significant reduction of lower airway Pa density in young children with cystic fibrosis.
Enhanced sensitivity of an in-fibre Bragg grating pressure sensor achieved through fibre diameter reduction (2008)

Contemporary biomedical pressure sensors are based on miniaturized piezo-resistive, strain-gauge or other solid-state sensing technologies. All of these technologies have key limitations, when packaged into miniaturized sensors, including fragility and long term instability. In-fibre Bragg gratings (FBGs) are an attractive alternative to these electronic technologies because FBGs are biocompatible, robust, immune to electromagnetic interference and mechanically compliant. FBGs can also be used to measure multiple physical parameters and distributions of parameters. We present a FBG-based pressure sensor that has pressure sensitivity 20 times greater than that of a bare fibre FBG, and a major diameter and sensing area of only 200 µm and 0.02 mm2, respectively. Increases in pressure sensitivity are achieved by reducing the diameter of the fibre in the region of the Bragg grating, thereby resulting in reduced cross-sectional area and therefore increased axial strains for a given applied pressure. The presented design is an improvement over other FBG pressure sensors that achieve increased sensitivity through mechanical amplification schemes, usually resulting in major diameters and sensing lengths of many millimetres. Calibration results demonstrate the FBG sensor's ability to measure pressure with ±0.36 kPa repeatability over a 14 kPa range. To our knowledge, this is the only FBG-based pressure sensor of its size to achieve this repeatability.
A continuous HF chemical laser: Production of fluorine atoms by a microwave discharge (1977)

We have used a slow-wave structure to dissociate SF6 and obtain the fluorine atoms for a cw hydrogen fluoride chemical laser. The laser output power has been observed to increase linearly with the absorbed microwave power. The effect of rare gases in the mixture is discussed. It is shown that the laser power increases linearly with their ionization potentials. Those features indicate that electron collisions are essential for the generation of fluorine atoms. In this respect, contributions involving metastable atoms are negligible. No simple relation is observed between the intensity of the fluorine spectral lines in the discharge and the laser power.
Acute toxicity of fire-retardant and foam-suppressant chemicals to <i>Hyalella azteca</i> (Saussure) (1997)

Abstract Acute toxicity tests were conducted with Hyalella azteca Saussure (an amphipod) exposed in soft and hard waters to three fire retardants (Fire-Trol GTS-R, Fire-Trol LCG-R, and Phos-Chek D75-F) and two foam suppressants (Phos-Chek WD-881 and Silv-Ex). The chemicals were slightly to moderately toxic to amphipods. The most toxic chemical to amphipods in soft and hard water was Phos-Chek WD-881 (96-h mean lethal concentration [LC50] equal to 10 mg/L and 22 mg/L, respectively), and the least toxic chemical to amphipods in soft water was Fire-Trol GTS-R (96-h LC50 equal to 127 mg/L) and in hard water was Fire-Trol LCG-R (96-h LC50 equal to 535 mg/L). Concentrations of ammonia in tests with the three fire retardants and both water types were greater than reported LC50 values and probably were the major toxic component. Estimated un-ionized ammonia concentrations near the LC50 were frequently less than the reported LC50 ammonia concentrations for amphipods. The three fire retardants were more toxic in soft water than in hard water even though ammonia and un-ionized ammonia concentrations were higher in hard water tests than in soft water tests. The accidental entry of fire-fighting chemicals into aquatic environments could adversely affect aquatic invertebrates, thereby disrupting ecosystem function.
Multiple <i>Trans</i>-Sensing Interactions Affect Meiotically Heritable Epigenetic States at the Maize <i>pl1</i> Locus (2007)

Interactions between specific maize purple plant1 (pl1) alleles result in heritable changes of gene regulation that are manifested as differences in anthocyanin pigmentation. Transcriptionally repressed states of Pl1-Rhoades alleles (termed Pl') are remarkably stable and invariably facilitate heritable changes of highly expressed states (termed Pl-Rh) in Pl'/Pl-Rh plants. However, Pl' can revert to Pl-Rh when hemizygous, when heterozygous with pl1 alleles other than Pl1-Rhoades, or in the absence of trans-acting factors required to maintain repressed states. Cis-linked features of Pl1-Rhoades responsible for these trans-sensing behaviors remain unknown. Here, genetic tests of a pl1 allelic series identify two potentially separate cis-linked features: one facilitating repression of Pl-Rh and another stabilizing Pl' in trans. Neither function is affected in ethyl-methanesulfonate-induced Pl1-Rhoades derivatives that produce truncated PL1 peptides, indicating that PL1 is unlikely to mediate trans interactions. Both functions, however, are impaired in a spontaneous Pl1-Rhoades derivative that fails to produce detectable pl1 RNA. Pl'-like states can also repress expression of a pl1-W22 allele, but this repression is not meiotically heritable. As the Pl' state is not associated with unique small RNA species representing the pl1-coding region, the available data suggest that interactions between elements required for transcription underlie Pl1-Rhoades epigenetic behaviors.
Predictive Factors of Early Postoperative Graft Function in Human Liver Transplantation (1994)

To identify factors predictive of early postoperative graft function, we analyzed 54 variables--including easily available clinical and laboratory data prospectively obtained from organ donors, transplant recipients and surgical procedures in 168 consecutive liver transplantations. Early postoperative graft function was classified into three groups according to a scoring system ranging from 3 to 9 based on peak serum ALT values, mean bile output and lowest prothrombin activity measured during the 72 hr after transplant: group 1 (score 3 to 4, good graft function; n = 73), group 2 (score 5 to 6, moderate dysfunction; n = 50) and group 3 (score, 7 to 9, severe dysfunction; n = 45). In univariate analyses, 8 of the 54 variables analyzed were statistically significant (p < 0.05) predictors of severe graft dysfunction: high serum sodium concentration and brain death caused by cranial trauma in organ donors, advanced age and low prothrombin activity in transplant recipients, prolonged total ischemia time and large transfusions of red blood cells, fresh frozen plasma and platelets during surgery. After introduction of these eight variables in a multivariate analysis, only four were found to independently predict early postoperative graft function: donor serum sodium concentration, total ischemia time, platelet transfusion during surgery and recipient prothrombin activity. In 52 liver transplantations, in which the predictive value of liver tissue adenine nucleotide concentration and several biochemical sensitive markers of donor nutritional status was also analyzed, only the ATP level in liver tissue obtained at the time of organ reperfusion was identified as an independent predictor of initial graft function.(ABSTRACT TRUNCATED AT 250 WORDS)
Extrapyramidal Reactions to Metoclopramide and Prochlorperazine (1989)

We have investigated prospectively the incidence of extrapyramidal events amongst patients receiving 'first' prescriptions for metoclopramide (n = 2557) and prochlorperazine (n = 2811) from general practitioners in the Northern Region using community pharmacists to capture prescriptions. There were 12 reports of acute dystonic-dyskinetic events following metoclopramide and the incidence of this reaction was significantly greater in those under 30 years than in those 30 years and over. Following prochlorperazine there were eight reports of Parkinsonism in patients whose ages were known; seven were over 60 years. The incidence in those over 60 years was significantly higher than in those less than 60 years.
Analytical modeling of cache behavior for affine programs (2017)

Optimizing compilers implement program transformation strategies aimed at reducing data movement to or from main memory by exploiting the data-cache hierarchy. However, instead of attempting to minimize the number of cache misses, very approximate cost models are used, due to the lack of precise compile-time models for misses for hierarchical caches. The current state of practice for cache miss analysis is based on accurate simulation. However, simulation requires time proportional to the dataset/problem size, as well as the number of distinct cache configurations of interest to be evaluated. This paper takes a fundamentally different approach, by focusing on polyhedral programs with static control flow. Instead of relying on costly simulation, a closed-form solution for modeling of misses in a set associative cache hierarchy is developed. This solution can enable program transformation choice at compile time to optimize cache misses. A tool implementing the approach has been developed and used for validation of the framework.
Differentiation between the Human Hookworms Ancylostoma duodenale and Necator americanus Using PCR-RFLP (1996)

There are 2 major species of hookworms that infect humans. Ancylostoma duodenale and Necator americanus. Although traditionally considered to be identical for treatment purposes, there are significant life history differences between the species that must be considered for the rational design of chemotherapeutic and immunoprophylactic control strategies. However, identification of the species infecting a particular population has been problematic, as the eggs of the 2 species cannot be reliably differentiated by classical parasitological methods. A PCR-based technique for the differentiation of hookworm species that infect humans is reported. A fragment of the 3' untranslated region of the cAMP-dependent protein kinase catalytic subunit gene was amplified from A. duodenale and N. americanus genomic DNA using primers derived from the corresponding A. caninum cDNA. Digestion of the amplified DNA with the restriction enzymes HpaII, MboI, TaqI, and ThaI generated specific restriction fragment patterns unique to each species. The technique can distinguish between pure and mixtures of hookworm DNA and can amplify DNA from a single egg. The primers also amplify the fragment from the DNA of several other species of hookworms that infect humans and other animals. The technique is fast, simple, and hookworm specific and represents a considerable savings in time over current methods used for distinguishing between human hookworm infections.