gebhart/patrepeval huggingface dataset:
Screening for the optimal induction parameters for periplasmic producing interferon-2b in Escherichia coli (2010)

Screening for optimum induction parameters to improve the production of periplasmic interferon-α2b (PrIFN-α2b) by recombinant Escherichia coli was conducted using shake flask culture. Recombinant E. coli Rosetta-gami 2(DE3) harboring the plasmid pET26b containing IFN-α2b gene under the control of the T7lac promoter was used, where the induction was accomplished by isopropyl β-D-1-thiogalactopyranoside (IPTG). The induction parameters (inducer concentration, point of induction, induction temperature and the length of induction) were analyzed to find the suitable range to be used for further optimization process. From the analysis, narrow range of induction temperature from 16 to 30°C and IPTG lower than 2 mM were found suitable for induction of PrIFN-α2b. On the other hand, early log phase was the preferred time to initiate the induction and the length of induction was dependent on the combination of other induction parameters used. 

	 

	Key words: Interferon-α2b (IFN-α2b), induction parameter, Escherichia coli,periplasm, shake flask culture.
Nucleophilic Substitution Reactions in Benzo[C][1,8]naphthyridines. II. (1990)

3-Chloro-1-methyl-6-(p- methylphenoxy ) benzo [c][1,8] naphthyridine has been prepared, the reactions with various nitrogen, oxygen and sulfur nucleophiles studied, and the results compared with those for the 1- chloro-3-methyl isomer. The 6-position was more reactive for oxygen and nitrogen nucleophiles, so much so that an initially added 6-NHR group was displaced by a second R'NH2 nucleophile at least as readily as was the 3-chloro group. With p- chloro ( thiophenol ), however, the 3-chloro group was preferentially displaced.
The Role of Chloramphenicol in the Treatment of Bloodstream Infection Due to Vancomycin‐Resistant<i>Enterococcus</i> (1998)

The incidence of bacteremia due to vancomycin-resistant Enterococcus (VRE) has increased markedly in recent years. We investigated the role of chloramphenicol in its treatment. All cases of VRE bacteremia occurring at our facility during a 45-month period were analyzed. The response to chloramphenicol, its effect on mortality, and the incidence of adverse effects were assessed. Fifty-one patients (65.4%) received chloramphenicol. Among patients in whom a response could be assessed, 22 (61.1%) of 36 demonstrated a clinical response, while 34 (79.1%) of 43 showed a microbiological response. Forty-two patients (53.8%) died as a result of the bacteremia. Although the mortality rate was lower for patients treated with chloramphenicol, the difference was not significant (odds ratio = 0.72; 95% confidence interval, 0.28-1.85; P = .49), nor was there an association between earlier initiation of therapy and reduced mortality (P = .45). In cases with central line-related bacteremia, there was no difference in mortality among patients treated with chloramphenicol, line removal, or both (P = .36). Although 16 patients (31.4%) had adverse effects, none could be definitely attributed to chloramphenicol. Although chloramphenicol was well-tolerated, no significant effect of its use on mortality could be demonstrated.
CXCR6 Induces Prostate Cancer Progression by the AKT/Mammalian Target of Rapamycin Signaling Pathway (2008)

Previous studies show that the chemokine CXCL16 and its receptor CXCR6 are likely to contribute to prostate cancer (PCa). In this investigation, the role of the CXCR6 receptor in PCa was further explored. CXCR6 protein expression was examined using high-density tissue microarrays and immunohistochemistry. Expression of CXCR6 showed strong epithelial staining that correlated with Gleason score. In vitro and in vivo studies in PCa cell lines suggested that alterations in CXCR6 expression were associated with invasive activities and tumor growth. In addition, CXCR6 expression was able to regulate expression of the proangiogenic factors interleukin (IL)-8 or vascular endothelial growth factor (VEGF), which are likely to participate in the regulation of tumor angiogenesis. Finally, we found that CXCL16 signaling induced the activation of Akt, p70S6K, and eukaryotic initiation factor 4E binding protein 1 included in mammalian target of rapamycin (mTOR) pathways, which are located downstream of Akt. Furthermore, rapamycin not only drastically inhibited CXCL16-induced PCa cell invasion and growth but reduced secretion of IL-8 or VEGF levels and inhibited expression of other CXCR6 targets including CD44 and matrix metalloproteinase 3 in PCa cells. Together, our data shows for the first time that the CXCR6/AKT/mTOR pathway plays a central role in the development of PCa. Blocking the CXCR6/AKT/mTOR signaling pathway may prove beneficial to prevent metastasis and provide a more effective therapeutic strategy for PCa.
Fluorescence Intensity Changes for Anthrylazacrown Ethers by Paramagnetic Metal Cations (1999)

Three anthrylazacrown ethers in which the anthracene fluorophore pi system is separated from the electron do-nor atoms by one methylene group were synthesized, and their photophysical study was accomplished. These fluorescent compounds showed a maximum fluorescence intensity at pH=5 in aqueous solutions and a decrease in fluorescence intensity upon binding of paramagnetic metal cations (Mn2+(d5), Co2+(d7), Cu2+(d9)). The de-crease in fluorescence intensity may be attributed to the paramagnetic effect of metal cations to deactivate the excited state by the nonradiative quenching process. The benzylic nitrogen was found to play an important role in changing fluorescence intensity. From the observed linear Stern-Volmer plot and the fluorescence lifetime independence of the presence of metal ions, it was inferred that the chelation enhanced fluorescence quenching (CHEQ) mechanism in the system is a ground state static quenching process. Enhanced fluorescence was also observed when an excess Na+ ion was added to the quenched aqueous solution, and it was attributed to cation displacement of a complexed fluorescence quencher.
Identification of metabolites of 111In-diethylenetriaminepentaacetic acid-monoclonal antibodies and antibody fragments in vivo. (1995)

The in vivo fate of various 111In-labeled polypeptides has been the subject of many investigations. Intracellular metabolism has been studied through the use of 111In-labeled glycoproteins that are concentrated in the lysosome by receptor-mediated endocytosis. These studies have indicated that the main lysosomal metabolite is 111In-chelate-epsilon-lysine, both in vitro and in vivo (Y. Arano et al., J. Nucl. Med., 35: 890-898, 1994; F. N. Franano et al., Nucl. Med. Biol., 21: 1023-1034, 1994). Since the vast majority of radiolabeled antibodies do not localize within the target tissue, an understanding of the metabolism of 111In-labeled antibodies in nontarget tissues is important for the rational design of future radiolabeled antibodies. We investigated the in vivo metabolism of 111In-DTPA3-conjugated antibody in female Sprague-Dawley rats using the anticolorectal carcinoma monoclonal antibody (MAb) 1A3 and MAb 1A3-F(ab')2. Livers and kidneys were harvested from rats injected with either intact MAb or MAb fragments and analyzed by gel filtration chromatography. Thirty-five % of the radioactivity from 111In-DTPA-1A3 MAb present in the liver was in the form of a low molecular weight species at 1 through 5 days. In contrast, 111In-DTPA-1A3-F(ab')2 was > 98% degraded to a low molecular weight species in the kidney after 1 day. In each case, the low molecular weight metabolites were collected and further analyzed by silica gel thin-layer chromatography, reversed phase high-performance liquid chromatography, and ion-exchange chromatography and compared to 111In-DTPA and 111In-DTPA-epsilon-lysine standards. In each system, the major metabolite co-eluted with 111In-DTPA-epsilon-lysine, similar to the results obtained with 111In-labeled glycoproteins that are delivered to lysosomes by receptor-mediated endocytosis. A minor metabolite that was more highly charged than 111In-DTPA was also observed. Analysis of urine and feces demonstrated that the main excretory product of both 111In-labeled intact 1A3 and 1A3-F(ab')2 was 111In-DTPA-epsilon-lysine. Based on this data, we propose that 111In-DTPA-antibodies are degraded within lysosomes of nontarget organs such as the liver and kidneys.
Competitive technologies for third generation infrared photon detectors (2006)

Hitherto, two families of multielement infrared (IR) detectors are used for principal military and civilian infrared applications; one is used for scanning systems (first generation) and the other is used for staring systems (second generation). Third generation systems are being developed nowadays. In the common understanding, third generation IR systems provide enhanced capabilities like larger number of pixels, higher frame rates, better thermal resolution as well as multicolor functionality and other on-chip functions. In the paper, issues associated with the development and exploitation of materials used in fabrication of third generation infrared photon detectors are discussed. In this class of detectors two main competitors, HgCdTe photodiodes and quantum well photoconductors are considered. The performance figures of merit of state-of-the-art HgCdTe and QWIP focal plane arrays (FPAs) are similar because the main limitations come from the readout circuits. The metallurgical issues of the epitaxial layers such as uniformity and number of defected elements are the serious problems in the case of long wavelength infrared (LWIR) and very LWIR (VLWIR) HgCdTe FPAs. It is predicted that superlattice based InAs/GaInSb system grown on GaSb substrate seems to be an attractive to HgCdTe with good spatial uniformity and an ability to span cutoff wavelength from 3 to 25 μm. In this context the material properties of type II superlattices are considered more in detail.
Phase velocity dispersion of a generalized metal-segment-loaded helix as used in broad-band traveling-wave tubes (1988)

An analytical model for predicting phase velocity dispersion of tape helix circuits loaded with solid-type or vane-type metal segments is described. An accurate design formula for dispersion is derived from the concept of the developed tape helix, taking account of the thickness effects of the tape and the edge effects of the metal segments. Comparisons with measurements of four solid-type and one vane-type helices show about +or-1% accuracy, which is seen to be sufficient for practical applications, The model can also be used to calculate a wide variety of asymmetry effects in loading elements around a tape helix.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Fungal Exopolysaccharide: Production, Composition and Applications (2013)

Fungal exopolysaccharides (EPSs) have been recognized as high value biomacromolecules for the last two decades. These products, including pullulan, scleroglucan, and botryosphaeran, have several applications in industries, pharmaceuticals, medicine, foods etc. Although fungal EPSs are highly relevant, to date information concerning fungal biosynthesis is scarce and an extensive search for new fugal species that can produce novel EPSs is still needed. In most cases, the molecular weight variations and sugar compositions of fungal EPSs are dependent to culture medium composition and different physical conditions provided during fermentation. An inclusive and illustrative review on fungal EPS is presented here. The general outline of the present work includes fungal EPS production, their compositions and applications. An emphasis is also given to listing out different fungal strains that can produce EPSs.
Corrosion-resistant coatings technology (1989)

1. Principles of Corrosion Protection by Coatings 2. Cathodic Control Protection by Sacrificial Metal Coatings 3. Anodic Control Protection by Noble Metal Coatings 4. EMF Control Protection by Noble Metal Coatings 5. Mixed Control Protection by Conversion Coatings 6. EMF Control Protection by Organic Coatings
Safety and efficacy of bridging to lung transplantation with antifibrotic drugs in idiopathic pulmonary fibrosis: a case series (2016)

Antifibrotic drugs can probably be safely administered in IPF patients, possibly attenuating disease progression over time, while awaiting LTx.
Large-volume en-bloc staining for electron microscopy-based connectomics (2015)

Large-scale connectomics requires dense staining of neuronal tissue blocks for electron microscopy (EM). Here we report a large-volume dense en-bloc EM staining protocol that overcomes the staining gradients, which so far substantially limited the reconstructable volumes in three-dimensional (3D) EM. Our protocol provides densely reconstructable tissue blocks from mouse neocortex sized at least 1 mm in diameter. By relaxing the constraints on precise topographic sample targeting, it makes the correlated functional and structural analysis of neuronal circuits realistic.
Amplification of fluorescent in situ hybridisation signals in formalin fixed paraffin wax embedded sections of colon tumour using biotinylated tyramide. (1997)

Fluorescent in situ hybridisation (FISH) is a powerful tool for the evaluation of chromosomal alterations in formalin fixed paraffin wax embedded sections of colorectal cancer. However, initial experiments using a two-step detection system for digoxigenin labelled chromosome specific centromeric probes resulted in a complete lack of hybridisation signal from a number of colorectal tumour sections. This was due to high levels of background autofluorescence observed in this tissue, which masked any relatively weak hybridisations present. To overcome this problem, a biotinylated tyramide mediated amplification system was incorporated into the FISH detection protocol. This involves the use of horseradish peroxidase to activate the biotinylated tyramide, resulting in the deposition of a large number of biotin molecules at the site of bound peroxidase, which corresponds directly to the location of hybridised probe. Final detection was by means of a streptavidin-FITC conjugate. Using this technique, a panel of 11 colorectal tumour samples studied to date have shown strong, specific hybridisation signals to the nucleus of tumour cells. Amplification of FISH signals by biotinylated tyramide has the potential to improve weak hybridisation signals in cells from numerous sources, using a variety of probe types, including single copy gene probes as well as centromere specific probes.
Removal of an Iron Matrix with Polyoxyethylene-Type Surfactant-Coated Amberlite XAD-4 for the Determination of Trace Impurities in High-Purity Iron (2005)

Admicellar sorbents for the removal of an iron matrix were prepared for the determination of trace impurities in high-purity iron. A 1.0-g amount of Amberlite XAD-4 (macroreticular styrene-divinylbenzene copolymer) was coated with 0.14-1.3 mmol of polyoxyethylene-type surfactants, including polyoxyethylene-4-tert-octylphenoxy ethers (Triton X series) and polyoxyethylene-4-isononylphenoxy ethers (PONPEs). The surfactant-coated XAD-4 was packed into a polypropylene column (7 mm i.d. x 50 mm high). A 5.0-cm(3) volume of sample solution was passed through the column at a flow rate of 0.5 cm(3) min(-1). Milligram amounts of iron(III) were effectively sorbed on the column from 8 mol dm(-3) hydrochloric acid solutions. Among the surfactants tested, polyoxyethylene(20)-4-isononylphenoxy ether (PONPE-20) showed the best performance: the iron leaked from the PONPE-20 column was 4 microg when 25 mg of iron(III) was introduced onto the column. Trace elements, such as Ti(IV), Cr(III), Mn(II), Co(II), Ni(II), Cu(II), Zn(II), Ag(I), Cd(II), Pb(II), and Bi(III), were not retained on the column and thus quantitatively recovered in the column effluent. The effective separation of trace elements from an iron matrix allowed their accurate determinations by inductively coupled plasma-mass spectrometry or graphite furnace atomic absorption spectrometry. The detection limits (3sigma blank) were in the nanogram per gram range. The proposed method was successfully applied to the determination of trace impurities in high-purity iron samples.
Review: Steady and pulsed pedestals, the how and why of post-receptoral pathway separation (2011)

In the mid-1990s, the Pokorny and Smith research group began a series of psychophysical experiments with the aim of separately measuring magnocellular (MC)- and parvocellular (PC)-pathway mediated achromatic contrast discrimination. Three paradigms provide complementary information: The pulsed-pedestal paradigm reveals PC contrast gain, the steady-pedestal paradigm reveals steady-state MC-pathway sensitivity, and the pedestal-Δ-pedestal paradigm reveals MC contrast gain. Further studies investigated the temporal and spatial summation properties of the underlying mechanisms and extended the work to include measures of spatial resolution, chromatic contrast discrimination, the detection and identification of stimulus polarity, and the inferred retinal mechanisms mediating illusory distortions. Other laboratories have also applied the methods to the study of normal and clinically impaired vision. This review describes the pedestal methodologies, how they relate to physiology, and how they have been and should be employed.
Effect of Ionic Strength on Protein Adsorption Kinetics (1994)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTEffect of Ionic Strength on Protein Adsorption KineticsJ. J. Ramsden and J. E. PrenosilCite this: J. Phys. Chem. 1994, 98, 20, 5376–5381Publication Date (Print):May 1, 1994Publication History Published online1 May 2002Published inissue 1 May 1994https://pubs.acs.org/doi/10.1021/j100071a031https://doi.org/10.1021/j100071a031research-articleACS PublicationsRequest reuse permissionsArticle Views755Altmetric-Citations59LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access options Get e-Alerts
Current Sharing in Digitally Controlled Masterless Multi-phase DC-DC Converters (2006)

This paper introduces modular masterless multi-phase architecture based on identical digitally controlled DC-DC converter modules that communicate over a digital bus. Advantages of the masterless architecture include simpler system configuration and development, and scalability to an arbitrary number of phases. Technical challenges are to facilitate proper phasing, control and current sharing functions, while minimizing data throughput requirements for the digital bus. A chain control algorithm is proposed to implement current sharing control in the modular masterless architecture. The algorithm performs a moving window averaging with relatively low storage and communication requirements. Implementations of the chain control in current-mode control systems and voltage-mode control systems are described in this paper. Experimental results are presented for a two-phase 12-V to 1.5-V, 15-A synchronous buck converter with digital voltage-mode control
The mode of spread of pancreas cancer on macroscopic and microscopic investigation at operation and autopsy. (1989)

北里大学外科で昭和46年7月より昭和60年12月までに経験した膵癌 (Ductcell carcinoma) 手術症例80例, 剖検症例24例につき膵癌の進展形式を検討し以下の結果を得た.1) 切除例においても, 膵被膜浸潤, 膵後方剥離面への癌侵襲陽性のものが多かった.2) 切除剖検例6例の検討では, 全例局在再発, 肝転移がみられ, 腹膜播種も5例にみられた.3) 非切除例の検討では非切除の因子として門脈系浸潤, 動脈系への浸潤, 膵後方浸潤が多かった.また肝転移, 腹膜播種が非切除の因子となったものもみられた.これらの検討をもとに昭和61年1月より積極的に門脈合併切除を伴う拡大手術を行い膵頭部癌の切除率が26.3%より50.0%と向上した.
Providing lightweight telepresence in mobile communication to enhance collaborative living (2004)

Thesis (Ph. D.)--Massachusetts Institute of Technology, School of Architecture and Planning, Program in Media Arts and Sciences, 2004.
Bmi‐1‐Green Fluorescent Protein‐Knock‐In Mice Reveal the Dynamic Regulation of Bmi‐1 Expression in Normal and Leukemic Hematopoietic Cells (2007)

The ability to self-renew is essential for all kinds of stem cells regardless of tissue type. One of the best candidate genes involved in conferring self-renewal capacity is Bmi-1, which has been proven to be essential for the maintenance of both normal adult hematopoietic and leukemia stem cells, as well as adult neural stem cells. To investigate the possible role of Bmi-1 in other cell types that also self-renew, we generated Bmi-1-green fluorescent protein (GFP)-knock-in mice, in which GFP was expressed under the endogenous transcriptional regulatory elements of the Bmi-1 gene. Using these targeted reporter mice, we demonstrated that Bmi-1 is expressed in hematopoietic stem cells (HSCs) at its highest levels and downregulated upon commitment to differentiation. An in vivo reconstitution assay revealed that the frequency of HSCs was 1/16 in Bmi-1high c-kit+ lin -Sca-1+ bone marrow (BM) cells and 1/49 in Bmi-1 high lin- BM cells, suggesting that Bmi-1 may serve as a marker for normal HSCs. In murine leukemia models induced by P210BCR/ABL or TEL/PDGFbetaR + AML1/ETO, Bmi-1 was not overexpressed in leukemic HSCs, despite the increase in the HSC numbers. Bmi-1 was expressed at its highest levels in undifferentiated leukemia cells. Furthermore, in several other nonhematopoietic tissues, cells could be separated into distinct subpopulations with differential Bmi-1 expression. Thus, these mice allow for the isolation of viable Bmi-1-expressing cells and have the potential to become a useful tool for understanding the role of Bmi-1 in normal and cancer stem cells in multiple tissue types. Disclosure of potential conflicts of interest is found at the end of this article.
Rapid Characterization of Fuel Atomizers Using an Optical Patternator (1999)

Planar laser scattering (PLS) and planar laser-induced fluorescence (PLIF) techniques are currently being used for rapid characterization of fuel sprays associated with gas turbine atomizers, diesel injectors, and automotive fuel injectors. These techniques can be used for qualitative, quantitative, and rapid measurement of fuel mass, spray geometry, and Sauter mean diameters in various sprays. The spatial distribution of the fuel mass can be inferred directly from the PLIF image, and the Sauter mean diameter can be measured by simultaneously recording the PLIF and PLS images and then ratioing the two. A spray characterization system incorporating the PLS and/or PLIF techniques has been loosely termed an optical patternator, and in this study, it has been used to characterize both steady and pulsed sprays. The results obtained with the optical patternator have been directly validated using a phase Doppler particle analyzer (PDPA).