gebhart/patrepeval huggingface dataset:
Modelling the physics in the iterative reconstruction for transmission computed tomography (2013)

There is an increasing interest in iterative reconstruction (IR) as a key tool to improve quality and increase applicability of x-ray CT imaging. IR has the ability to significantly reduce patient dose; it provides the flexibility to reconstruct images from arbitrary x-ray system geometries and allows one to include detailed models of photon transport and detection physics to accurately correct for a wide variety of image degrading effects. This paper reviews discretization issues and modelling of finite spatial resolution, Compton scatter in the scanned object, data noise and the energy spectrum. The widespread implementation of IR with a highly accurate model-based correction, however, still requires significant effort. In addition, new hardware will provide new opportunities and challenges to improve CT with new modelling.
Diffracted wavefront measurement of a volume phase holographic grating at cryogenic temperature (2006)

Flatness of the wavefront diffracted by grating can be mandatory for some applications. At ambient temperature, the wavefront diffracted by a volume phase holographic grating (VPHG) is well mastered by the manufacturing process and can be corrected or shaped by postpolishing. However, to be used in cooled infrared spectrometers, VPHGs have to stand and work properly at low temperatures. We present the measurement of the wavefront diffracted by a typical VPHG at various temperatures down to 150 K and at several thermal inhomogeneity amplitudes. The particular grating observed was produced using a dichromated gelatine technique and encapsulated between two glass blanks. Diffracted wavefront measurements show that the wavefront is extremely stable according to the temperature as long as the latter is homogeneous over the grating stack volume. Increasing the thermal inhomogeneity increases the wavefront error that pinpoints the importance of the final instrument thermal design. This concludes the dichromated gelatine VPHG technology, used more and more in visible spectrometers, can be applied as it is to cooled IR spectrometers.
Influence of running on orchidectomy-induced bone loss in growing rats (1996)

International audience
Autopsy Findings of Severe COVID-19 Pneumonia Combined with Pulmonary Aspergillosis, Pneumothorax, and Pulmonary Thromboembolisms (2023)

BACKGROUND COVID-19-associated pulmonary aspergillosis (CAPA), acute respiratory distress syndrome (ARDS), pulmonary thromboembolism (PTE), and pneumothorax are complications in severe COVID-19 patients. CASE REPORT A 64-year-old Japanese man was diagnosed with COVID-19. His past medical history included uncontrolled diabetes mellitus. He had no vaccination for COVID-19. Despite oxygen inhalation, remdesivir, dexamethasone (6.6 mg per day), and baricitinib (4 mg per day for 12 days), the disease progressed. The patient was supported with mechanical ventilation. Dexamethasone was switched to methylprednisolone (1000 mg per day for 3 days, and then reduced by half every 3 days), and intravenous heparin was initiated. Voriconazole (800 mg on the first day and then 400 mg per day for 14 days) was also started because Aspergillus fumigatus was detected in intratracheal sputum. However, he died of respiratory failure. Pathological findings of autopsy showed: (1) diffuse alveolar damage in a wide area of the lungs, which is consistent with ARDS due to COVID-19 pneumonia, (2) PTEs in peripheral pulmonary arteries, (3) CAPA, and (4) pneumothorax induced by CAPA. These conditions were all active states, suggesting that the treatments were insufficient. CONCLUSIONS Autopsy revealed active findings of ARDS, PTEs, and CAPA in a severe COVID-19 patient despite heavy treatment for each condition. CAPA can be a cause of pneumothorax. It is not easy to improve these conditions simultaneously because their treatments can induce antagonizing biological actions. To prevent severe COVID-19, it is important to reduce risk factors, such as by vaccination and appropriate blood glucose control.
A Study on Position Estimation Using Multiple Vehicle Trajectories (2012)

Recently, the technology that measures distance to the vehicle ahead using a car-mounted stereo camera has been commercialized as driver assistance systems to avoid collision. The authors are looking to deploy the technology into road-side systems for accident investigation and operational purposes. In this paper, the authors present a high accuracy vehicle position estimation method that uses two trajectories of the same vehicle to alleviate the influence of measurement error of disparity and to improve vehicle positioning which is a specific issue for a road-side system. The basic experiment has been conducted and the results showed significant improvement in the vehicle positioning.
Interim Estimates of 2022–23 Seasonal Influenza Vaccine Effectiveness — Wisconsin, October 2022–February 2023 (2023)

In the United States, 2022-23 influenza activity began earlier than usual, increasing in October 2022, and has been associated with high rates of hospitalizations among children* (1). Influenza A(H3N2) represented most influenza viruses detected and subtyped during this period, but A(H1N1)pdm09 viruses cocirculated as well. Most viruses characterized were in the same genetic subclade as and antigenically similar to the viruses included in the 2022-23 Northern Hemisphere influenza vaccine (1,2). Effectiveness of influenza vaccine varies by season, influenza virus subtype, and antigenic match with circulating viruses. This interim report used data from two concurrent studies conducted at Marshfield Clinic Health System (MCHS) in Wisconsin during October 23, 2022-February 10, 2023, to estimate influenza vaccine effectiveness (VE). Overall, VE was 54% against medically attended outpatient acute respiratory illness (ARI) associated with laboratory-confirmed influenza A among patients aged 6 months-64 years. In a community cohort of children and adolescents aged <18 years, VE was 71% against symptomatic laboratory-confirmed influenza A virus infection. These interim analyses indicate that influenza vaccination substantially reduced the risk for medically attended influenza among persons aged <65 years and for symptomatic influenza in children and adolescents. Annual influenza vaccination is the best strategy for preventing influenza and its complications. CDC recommends that health care providers continue to administer annual influenza vaccine to persons aged ≥6 months as long as influenza viruses are circulating (2).
Neurohypophyseal Hormones and Analogues: Magnesium Dependence and Contraction of Arterial Smooth Muscle (1975)

The present quantitative results, using isolated rat aorta, demonstrate that different [Mg2+]o (i.e. 0.2, 1.2 and 6.0 mM) potentiate the contractile actions of a variety of neuohypophyseal hormones and synthetic analogues on vascular smooth muscle. [Mg2+]o can alter both the hormone-receptor affinities (H-RA) and intrinsic (contractile) activities (i.a.) of these peptides on vascular muscle; 1.2 mM [Mg2+]o (approximately that found in rat plasma) appears to optimize H-RA and i.a. on rat aortic smooth muscle. The presence of [Mg2+]o not only steepens the concentration-effect curves to the neurohypophyseal peptides but increases the maximum contractile responses as well. The present findings question that [Mg+]o potentiates responses to neurohypophyseal peptides by vascular muscle solely by affecting H-RA. The present study supports the notion that Mg2+ potentiates responses to these peptides by acting at sites other than the receptor in mammalian vascular muscle. In addition, the present experiments suggest that the [Mg2+]o dependence of neurohypophyseal peptides on at lesast one mammalian vascular muscle-rat aorta- is directly rather than inversely proportional to the rat pressor potency of the molecules. Further, the vasopressin receptor which subserves contraction in mammalian blood vessels may differ in this respect from that in uterine smooth muscle.
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments (2016)

Hi-C experiments explore the 3D structure of the genome, generating terabases of data to create high-resolution contact maps. Here, we introduce Juicer, an open-source tool for analyzing terabase-scale Hi-C datasets. Juicer allows users without a computational background to transform raw sequence data into normalized contact maps with one click. Juicer produces a hic file containing compressed contact matrices at many resolutions, facilitating visualization and analysis at multiple scales. Structural features, such as loops and domains, are automatically annotated. Juicer is available as open source software at http://aidenlab.org/juicer/.
Low-frequency dielectric properties for diagnosis of aging in polymeric cables (1996)

The results of thermally stimulated discharging currents and isothermal direct currents measurements, performed on crosslinked polyethylene cable models aged under different thermal and electrothermal stresses, are presented and discussed. It is shown that aging affects the low-frequency behavior of the polymer. The changes observed in the relaxation processes are related to those of other properties, e.g., density, melting enthalpy, electric strength, electrical conductivity, and microstructure, as well as to the degradation phenomena caused in the insulation by the applied stresses. The proposed techniques, therefore, prove to be an effective diagnostic tool for investigating the aging of polymeric insulating materials.
Study of a small mobile robot that uses living insect antennae as pheromone sensors (2003)

We have developed a pheromone-tracing robot, PheGMot-III, which is endowed with the silkworm moth's antennae as pheromone sensors. In order to maximize the use of the antennae, the robot's size was scaled down to the insect's size and workspace. By comparing the robot's behavior to that of the silkworm moth, we were able to improve the behavior release models implemented in PheGMot-III. We confirm the performance of the pheromone sensor and discuss some behavior release models.
Role of Inducible Nitric Oxide Synthase in Rostral Ventrolateral Medulla in Blood Pressure Regulation in Spontaneously Hypertensive Rats (2009)

Nitric oxide (NO) in the brainstem modulates blood pressure (BP). Overexpression of inducible NO synthase (iNOS) in the rostral ventrolateral medulla (RVLM) increases BP in normotensive Wistar-Kyoto rats (WKY), but its role in BP regulation in spontaneously hypertensive rats (SHR) is unknown. We examined iNOS expression and the effect of iNOS inhibitors in the RVLM on BP and heart rate in SHR and WKY. iNOS levels in the RVLM were significantly higher in SHR than in WKY. Bilateral microinjection of aminoguanidine into the RVLM dose-dependently decreased BP and heart rate in SHR, but not in WKY. These findings suggest that iNOS expression in the RVLM of SHR contributes to increase BP.
A dynamic approach to diffusion and permeation measurements (1970)

Abstract A dynamic method for investigating the mechanism of permeation and diffusion through polymers has been explored. The permeation cell consists of two compartments separated by the membrane. The permeant (gas, vapor, or liquid) is introduced into one compartment; a carrier gas (helium) flows at constant rate through the other and sweeps the permeant which diffuses through the membrane to the thermal conductivity detector. Both compartments are at atmospheric pressure; thus no or little membrane support is required, and leakage problems are minimal. Moreover, the same membrane can be used over a wide temperature range and for diverse permeants. The detector signal is at any instant proportional to the permeation rate. A simple mathematical formalism for deriving the diffusion coefficient from the transient permeation rates has been developed. The measured diffusion and permeability coefficients of CO 2 , O 2 , and N 2 through low‐density polyethylene closely agree with literature values. Permeation of hexane and benzene through polyethylene follows a complex diffusion law, and the rate depends on the thermal history of the system. The dynamic method is particularly suited to the study of transitions in polymers. Changes in permeation rates, usually occurring at transition points, can easily be discovered by slow temperature scanning of the system.
Novel Neuronal Phenotypes from Neural Progenitor Cells (2004)

We report the first isolation of progenitor cells from the hypothalamus, a derivative of the embryonic basal plate that does not exhibit neurogenesis postnatally. Neurons derived from hypothalamic progenitor cells were compared with those derived from progenitor cultures of hippocampus, an embryonic alar plate derivative that continues to support neurogenesis in vivo into adulthood. Aside from their different embryonic origins and their different neurogenic potential in vivo, these brain regions were chosen because they are populated with cells of three different categories: Category I cells are generated in both hippocampus and hypothalamus, Category II cells are generated in the hypothalamus but are absent from the hippocampus, and Category III is a cell type generated in the olfactory placode that migrates into the hypothalamus during development. Stem-like cells isolated from other brain regions, with the ability to generate neurons and glia, produce neurons of several phenotypes including gabaergic, dopaminergic, and cholinergic lineages. In the present study, we extended our observations into neuroendocrine phenotypes. The cultured neural precursors from 7-week-old rat hypothalamus readily generated neuropeptide-expressing neurons. Hippocampal and hypothalamic progenitor cultures converged to indistinguishable populations and produced neurons of all three categories, confirming that even short-term culture confers or selects for immature progenitors with enough plasticity to elaborate neuronal phenotypes usually inhibited in vivo by the local microenvironment. The range of phenotypes generated from neuronal precursors in vitro now includes the peptides found in the neuroendocrine system: corticotropin-releasing hormone, growth hormone-releasing hormone, gonadotropin-releasing hormone, oxytocin, somatostatin, thyrotropin-releasing hormone, and vasopressin.
Prevalence, Spread, and Effects of the Microsporidium <I>Thelohania solenopsae</I> Released into Populations with Different Social Forms of the Red Imported Fire Ant (Hymenoptera: Formicidae) (2005)

Abstract The microsporidium Thelohania solenopsae Knell, Allen, and Hazard was released into colonies of red imported fire ants, Solenopsis invicta Buren, at four field sites in Louisiana. Social form of the ant affected the establishment of the microsporidium; long-term epizootics developed at two sites with predominantly polygyne populations, whereas the pathogen produced a low disease prevalence before it disappeared or did not infect ants at all at two monogyne sites. This study is the first report of artificial infection of monogyne S. invicta field colonies. When the microsporidium became established in mixed monogyne/polygyne ant populations, prevalence rates peaked at &gt;75% in both social forms. In mixed ant populations, the social form suffering higher prevalence of the disease decreased proportionally to the other form, possibly indicating a competitive disadvantage. Host population density or site characteristics may have influenced spread of the disease; the rate of spread was 0.9 m/mo at one epizootic site and reached 9.4 m/mo at the other. There was little seasonal variation in prevalence, which averaged 47% in February, 51% in April/May, and 57% in October/November at the two epizootic sites. The strongest evidence of microsporidian impact on S. invicta populations was a negative correlation between colony numbers versus percentage infection and a sporadic decrease in the number of foragers. There was some evidence of a decrease in the size and number of colonies at one epizootic site and a decrease in brood at the other. This sporadic weakening of the S. invicta populations did not lead to significant immigration of other ant species.
Quaternary carbons by the alkylation of tertiary halides with aluminum alkyls. Model for initiation and termination in cationic polymerization (1970)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTQuaternary carbons by the alkylation of tertiary halides with aluminum alkyls. Model for initiation and termination in cationic polymerizationJoseph P. KennedyCite this: J. Org. Chem. 1970, 35, 2, 532–536Publication Date (Print):February 1, 1970Publication History Published online1 May 2002Published inissue 1 February 1970https://doi.org/10.1021/jo00827a063RIGHTS & PERMISSIONSArticle Views153Altmetric-Citations42LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (601 KB) Get e-Alertsclose Get e-Alerts
Evaluation of Diarylureas for Activity Against Plasmodium falciparum (2010)

A library of diarylurea IGFR inhibitors was screened for activity against chloroquine-sensitive (3D7) and chloroquine-resistant (K1) strains of Plasmodium falciparum. The 4-aminoquinaldine-derived diarylureas displayed promising antimalarial potency. Further exploration of the B ring of 4-aminoquinaldinyl ureas allowed identification of several quinaldin-4-yl ureas 4{13, 39} and 4{13, 58} sufficiently potent against both 3D7 and K1 strains to qualify as bone fide leads.
In situ synthesis of polyurethane–TiO2 nanocomposite and performance in solid propellants (2013)

Achieving a homogeneous nanoparticle dispersion is a frequent challenge in the preparation of polymer–matrix nanocomposites. In this paper, we report a polyurethane–TiO2 composite with improved nanoparticle dispersion by the in situ synthesis of TiO2 nanoparticles in a solution containing the pre-polymer hydroxyl-terminated polybutadiene (HTPB). The coordination chemistry of titanium with the functional groups of HTPB was studied by 1H NMR spectroscopy, and protective methods were developed to prevent undesired side reactions. The resulting synthesis approach produced a uniform dispersion of mesoporous anatase TiO2 nanoparticles with minimal agglomeration in HTPB, which could then be cast and cured into bulk polyurethane composites. The performance of the polyurethane–TiO2 composite as a solid propellant binder was investigated. The in situ TiO2 nanoparticles demonstrated substantially higher activity as combustion catalysts compared to TiO2 nanoparticles incorporated into polyurethane by conventional powder or solution mixing methods.
Minimum cost input-output and control configuration selection: A structural systems approach (2013)

In this paper we provide solutions to two different (but related) design problems involving large-scale linear dynamical systems: 1) the optimal input/output structural design ensuring structural controllability/observability and incurring in the minimal cost under generic assumptions; and 2) the optimal structural control configuration design for decentralized control, i.e., the sparsest information pattern or the minimal communication between outputs and inputs, such that the closed-loop system has no structurally fixed modes and incurring in the minimal cost under the assumption that the communication devices have the same cost. We show that the proposed solution can be implemented efficiently, i.e., using an algorithm with polynomial time complexity in the number of the state variables. We illustrate the obtained results with an example.
The Nature and Arrangement of Pentatricopeptide Domains and the Linker Sequences Between Them (2020)

The tricopeptide (amino acid number in the 30s) repeats constitute some of the most common amino acid repeats in proteins of diverse organisms. The most important representatives of this class are the 34-residue and 35-residue repeats, eponymously known as tetratricopeptide repeat (TPR) and pentatricopeptide repeat (PPR), respectively. The unit motif of both consists of a pair of alpha helices. As members of the large, all-helical repeat classes, TPR and PPR share structural similarities, but also play specific roles in protein function. In this study, a comprehensive bioinformatic analysis of the PPR units and the linkers that connect them was conducted. The results suggested the existence of PPR repeats of various formats, as well as smaller, PPR-unrelated repeats. Besides their length, these repeats differed in amino acid arrangements and location of key amino acids. These findings provide a broader and unified perspective of the pentatricopeptide family while raising provocative questions about the assembly and evolution of these domains.
ANAC032 Positively Regulates Age-Dependent and Stress-Induced Senescence inArabidopsis thaliana (2016)

Members of the NAC transcription factor family have been implicated in the regulation of different processes of plant development including senescence. In this study, the role of ANAC032 is analyzed in Arabidopsis thaliana (Col-0). ANAC032 is shown to act as a transcriptional activator and its expression is induced in senescing leaves as well as in dark-treated detached leaves. Analysis of transgenic overexpressors (OXs) and chimeric repressors (SRDXs) of ANAC032 indicates that ANAC032 positively regulates age-dependent and dark-induced leaf senescence. Quantitative real-time PCR analysis showed that ANAC032 regulates leaf senescence mainly through the modulation of expression of the senescence-associated genes AtNYE1, SAG113 and SAUR36/SAG201, which are involved in Chl degradation, and ABA and auxin promotion of senescence, respectively. In addition, ANAC032 expression is induced by a range of oxidative and abiotic stresses. As a result, ANAC032 overexpression lines exhibited enhanced leaf senescence when challenged with different oxidative (3-aminotriazole, fumonisin B1 and high light) and abiotic stress (osmotic and salinity) conditions compared with the wild type. In contrast, ANAC032 SRDX lines displayed the opposite phenotype. ANAC032 transgenic lines showed altered 2,4-D-mediated root tip swelling and root inhibition responses when compared with the wild type. The altered response to auxin, oxidative and abiotic stress treatments in ANAC032 transgenic lines involves differential accumulation of H<sub>2</sub>O<sub>2</sub> compared with the wild type. Taken together, these results indicate that ANAC032 is an important transcription factor that positively regulates age-dependent and stress-induced senescence in A. thaliana by modulating reactive oxygen species production.