gebhart/patrepeval huggingface dataset:
Sonochemically-induced spectral shift as a probe of green fluorescent protein release from nano capsules (2014)

Encapsulation in the form of micro and nanocapsules is an attractive route for controlling the delivery and release of active proteins and peptides. Many approaches exist to probe the morphology of such capsules as well as their mechanisms of formation. By contrast, the release of proteins from such components in a complex biological environment has been challenging to probe directly. In this paper we show that the spectral differences between green fluorescent protein (GFP) in capsules and in its free form can be used to monitor in situ the release of the protein from the confinement of capsules. These findings represent a new route towards engineering the spectral characteristics of GFP through physical rather than chemical means. We demonstrate the use of GFP protein capsules for monitoring in real time the release of protein in live cells by exposing rat L6 myotubes to protein capsules. The GFP spheres with a blue fluorescent signal dissociate inside the L6 myotubes to individual GFP molecules with a change in fluorescent signal from blue to green. These sensitive spectral characteristics enabled us to resolve the dissociation of capsules inside the cells in both time and space. We discuss the implications of our results for quantifying parameters crucial for the delivery of proteins in biological environments.
Synthesis of CuO/ZnO Composite Nanostructures, Their Optical Characterization and Valence Band Offset Determination by X-Ray Photoelectron Spectroscopy (2014)

The study of the optical properties of zinc oxide (ZnO) nanorods and its composite nanostructures is an appealing issue in order to have highly efficient optoelectronic devices in the future. Zinc oxide, copper oxide (CuO) and their composite nanostructures were grown by the hydrothermal growth technique. The structural properties of the grown ZnO, CuO and their composite NSs were investigated by scanning electron microscopy and X-ray diffraction techniques. UV-visible spectroscopy, Cathodoluminescence and photoluminescence techniques were used for the study of optical properties of the as synthesized nanomaterials. X-ray photoelectron spectroscopy was used to measure the valence band offset of the CuO/ZnO composite nanostructures. Cathodoluminescence study of pure ZnO nanorods showed more insight for lateral luminescence compared to the top surface of the nanorods which opened a novel investigation in the area of optical properties of ZnO nanomaterial. While the room temperature cathodoluminescence spectra of CuO/ZnO composite nanostructures have demonstrated excellent luminescence in the UV region compared to the cathodoluminescence spectra observed at 4 K. The measured values for valence band offset and conduction band offset are found to be 2.83 eV and 0.73 eV, respectively for the prepared CuO/ZnO composite nanostructures. It was observed that CuO/ZnO composite nanostructures have type-II band alignment. The conclusion from both the cathodoluminescence and the photoluminescence studies showed that the luminescence in the visible region is only originated from the ZnO nanomaterial and that the CuO absorbs this visible emission as it covers the ZnO. This provides evidence suggesting that the use of CuO/ZnO in the fabrication of LEDs in the visible range is not appropriate.
The algebra of modified saddle-point variational principles. (2005)

Neuroleptic malignant syndrome is caused by serious adverse effects of antipsychotic agents and occurs only rarely. Endomyocardial biopsies documented unique clustered lipid droplets in a Japanese man with this disease. After administration of haloperidol, he had symptoms of high fever, respiratory dysfunction, and cardiogenic shock, and subsequently suffered from multiple organ failure. Fortunately, he was completely cured with intensive therapy. In the convulsant stage, left ventricular endomyocardial biopsies were performed that yielded the interesting discovery of unique clustered lipid droplets among the myofibrils. It was suggested that although the pathomechanism of neuroleptic malignant syndrome is unknown, this disease may be characterized by a lipid metabolic disorder of the cardiac muscle cell.
1.6 mm Diameter Scanning Fiber Endoscope (2005)

Minimally invasive medical procedures require thin, flexible endoscopes that produce high resolution images. Current scanning fiber endoscope (SFE) prototypes meet these requirements with a 1.6 mm diameter distal tip and 500 lines of resolution.
Flow cytometric quantification of surface-displayed recombinant receptors on staphylococci. (1997)

Surface display of recombinant proteins on bacteria and phages has become an important tool in bioscience. To evaluate the various host systems, a great need exists for quantitative methods to determine the densities of displayed proteins and peptides on the bacteria and phage surfaces. Here we describe how a method previously applied for quantification of surface proteins on mammalian cells has been adapted for quantification of chimeric receptors surface-displayed on bacteria; in this study, the bacteria being recombinant staphylococci. The presented method takes advantage of fluorescence-activated cell sorting (FACS) technology and a new type of nonfluorescent plastic beads, similar in size (2 microns in diameter) to bacterial cells, and thus suitable for generation of calibration curves from which the number of chimeric receptors can be obtained. The method was used to estimate the number of antigenic sites on two types of recombinant staphylococci, both carrying heterologous chimeric receptors, and it was found that the recombinant Staphylococcus carnosus cells carried approximately 10(4) surface-displayed antigenic sites, while recombinant Staphylococcus xylosus exposed approximately 3 x 10(3) sites per cell. The use of the deviced method for different applications is discussed.
Assimilation of drifter observations for the reconstruction of the Eulerian circulation field (2003)

In light of the increasing number of drifting buoys in the ocean and recent advances in the realism of ocean general circulation models toward oceanic forecasting, the problem of assimilation of Lagrangian observations data in Eulerian models is investigated. A new and general rigorous approach is developed based on optimal interpolation (OI) methods, which takes into account directly the Lagrangian nature of the observations. An idealized version of this general formulation is tested in the framework of identical twin experiments using a reduced gravity, quasi‐geostrophic model. An extensive study is conducted to quantify the effectiveness of Lagrangian data assimilation as a function of the number of drifters, the frequency of assimilation, and the uncertainties associated with the forcing functions driving the ocean model. The performance of the Lagrangian assimilation technique is also compared to that of conventional methods of assimilating drifters as moving current meters, and assimilation of Eulerian data, such as fixed‐point velocities. Overall, the results are very favorable for the assimilation of Lagrangian observations to improve the Eulerian velocity field in ocean models. The results of our assimilation twin experiments imply an optimal sampling frequency for oceanic Lagrangian instruments in the range of 20–50% of the Lagrangian integral timescale of the flow field.
Glycerin-Kinase und Lipolyse des menschlichen Fettgewebes in Abhängigkeit vom relativen Körpergewicht (1971)

Article Glycerin-Kinase und Lipolyse des menschlichen Fettgewebes in Abhängigkeit vom relativen Körpergewicht was published on January 1, 1971 in the journal Biological Chemistry (volume 352, issue 1).
Tough, Shape-Changing Materials: Crystallized Liquid Crystal Elastomers (2017)

Approaches for the synthesis and processing of responsive materials that combine robust mechanical properties and the ability to undergo shape change in response to a stimulus are of intense interest. Here, we report an approach to integrate these properties by synthesizing liquid crystal elastomers (LCEs) that can be aligned and subsequently crystallized. We polymerize LCEs in the isotropic and nematic states and characterize the resulting actuation and mechanical properties. After polymerization, each of these materials can be reversibly crystallized. By crystallizing LCEs, we demonstrate stiffer and tougher shape changing materials. Notably, crystallized samples exhibit moduli 2 orders of magnitude higher and toughness 5 times higher than nematic elastomers. Heating melts the crystallinity and then induces shape change via melting of the liquid crystalline phase. These LCEs are capable of high load bearing during actuation, up to 1.3 MPa, and high work capacity, up to 730 kJ/m3. These aligned and crystallized LCEs offer promising benefits as dynamic smart materials with robust mechanical properties.
MicroRNA‑126‑3p suppresses HeLa cell proliferation, migration and invasion, and increases apoptosis via the PI3K/PDK1/AKT pathway (2020)

We previously reported that relative to normal cervical mucus, microRNA 126‑3p (miR‑126‑3p) is present in significantly greater amounts in the cervical mucus of patients with overt cervical cancer or precursor lesions. Here, we investigated the effects of enforced miR‑126‑3p expression in the cervical cancer cell line, HeLa, on proliferation, migration, invasion, apoptosis and protein expression. We transfected HeLa cells with miR‑126‑3p miRNA and found that proliferation, migration and invasion by cell counting, wound healing, cell migration and invasion assay were significantly reduced in these cells relative to those transfected with a negative control mimic. The levels of phosphoinositide 3 kinase (PI3K), phosphorylated 3‑phosphoinositide‑dependent protein kinase‑1 (p‑PDK1) and p‑AKT proteins were lower in the miR‑126‑3p‑transfected cells. Phosphorylated 70S6K (p‑p70S6K), phosphorylated glycogen synthase kinase 3β (p‑GSK3β), phosphorylated S6K (p‑S6K), cyclin D1, phosphorylated p21‑activated kinase 1 (p‑PAK1), Rho associated coiled‑coil containing protein kinase 1 (ROCK1), myotonic dystrophy‑related CDC42‑binding kinases α (MRCKα) and phospholipase C γ1 (p‑PLCγ1) were also downregulated. This suggests that downstream effectors of the PI3K/PDK1/AKT pathway are targets for inhibition by miR‑126‑3p. In contrast, apoptotic‑related proteins including the BCL‑2‑associated agonist of cell death (Bad), B‑cell lymphoma‑extra‑large (Bcl‑xL) and BCL‑2‑associated X (Bax), were all upregulated by miR‑126‑3p, resulting in increased caspase 3/7 activity and apoptosis. Thus, enforced expression of miR‑126‑3p inhibited cell migration and invasion and also induced apoptosis by regulating the PI3K/PDK1/AKT pathway in HeLa cells. Hence, high levels of miR‑126‑3p may inhibit cervical carcinogenesis, and targeting the PI3K/PDK1/AKT pathway via miR‑126‑3p could represent a new approach for treating patients with cervical cancer.
Arterial baroreflex dynamics in normotensive and spontaneously hypertensive rats (1992)

To investigate dynamic or frequency-dependent characteristics of arterial baroreflex control of efferent sympathetic nerve activity in spontaneously hypertensive rats (SHR) and Wistar-Kyoto rats (WKY), we assessed the transfer function from aortic pressure (AP) to renal sympathetic nerve activity (RSNA) using a "white-noise technique." In pentobarbital sodium-anesthetized rats, we recorded RSNA as the output, while AP was randomly perturbed to impose input pressure changes with broad frequencies. We calculated the transfer function from AP to RSNA over the frequency range of 0.01-5 Hz through the spectral analysis of the input and output. The results indicated that the gain, phase shift, and coherence of the transfer function for SHR and for WKY were similar and statistically indistinguishable. The gain was relatively constant below 0.05 Hz but increased steadily by fivefold as frequency increased in the frequency range of 0.05-0.8 Hz. The phase was out of phase where coherence was high. The coherence was high (greater than 0.5) in the frequency range of 0.04-0.8 and 1.00-1.03 Hz but was low in other frequencies. These results suggest that dynamic or frequency-dependent characteristics of arterial baroreflex control of RSNA were not altered in SHR as compared with WKY.
Clinical efficacy in reducing dentin hypersensitivity of a dentifrice containing 8.0% arginine, calcium carbonate, and 1450 ppm fluoride compared to a dentifrice containing 8% strontium acetate and 1040 ppm fluoride under consumer usage conditions before and after switch-over. (2011)

Eight weeks of brushing with Colgate Sensitive Pro-Relief(elmex Sensitive Professional) provides significant reductions in mean dentin hypersensitivity relative to the identical use of Sensodyne Rapid Relief. Additionally, the dentin hypersensitivity reductions achieved by twice-daily brushing with Sensodyne Rapid Relief are significantly improved by switching to twice-daily brushing with Colgate Sensitive Pro-Relief (elmex Sensitive Professional) for two and eight weeks. Further, the dentin hypersensitivity reductions achieved by twice-daily brushing with Colgate Sensitive Pro-Relief (elmex Sensitive Professional) are not improved by switching to twice-daily brushing with Sensodyne Rapid Relief for two or eight weeks. Eight weeks' use of Colgate Sensitive Pro-Relief (elmex Sensitive Professional), after having used Sensodyne Rapid Relief for an initial eight-week time period, provides statistically significant improvements in dentin hypersensitivity relative to eight weeks' use of the Sensodyne Rapid Relief.
Phase segregation in polymer thin films: Elucidations by X-ray and scanning force microscopy (1999)

We have used quantitative X-ray microscopy in combination with Scanning Force Microscopy to monitor the phase separation of spun cast thin films of polystyrene and poly(methyl methacrylate) blends upon annealing. Both techniques complement and enhance each other in elucidating the complicated structures that develop as a function of annealing time. We have determined the composition of the mixed phases that result from solvent spin casting. We subsequently observe the sudden rearrangement into domains much smaller than those originally formed. Unique, intricate hydrodynamic mass flow patterns form during coarsening which are in qualitative agreement with recent simulations of phase segregation in two-dimensional viscous fluids. Complicated polymer-polymer interfaces persist even in the later stages that are explained in terms of the geometric constraints of a thin film and the dependance of polymer viscosity on film thickness.
Association of the CAV1‐CAV2 locus with normal‐tension glaucoma in Chinese and Japanese (2020)

In this study, we confirmed the association of rs4236601 at the CAV1-CAV2 locus with NTG in Chinese. SNP rs4236601 is monomorphic, and rs1052990 tends towards a different direction in the Japanese cohort. Further studies are warranted to verify the ethnic difference and gender-specific effects of this locus.
Challenges in mass spectrometry (2002)

Report of the round table discussionThe reported MS round table took place within the ProteomeValley Technology Fair during the Swiss Proteomics Society 2001 Congress. It was organised by the Swiss Proteomics Society (SPS) in collaboration with FontisMedia (http://www.fontismedia. com). It was scheduled November 22(nd), 2001 from 16:40 to 18:00 at the Geneva University Hospital. The objective of the MS round table was to bring together two kinds of specialists in mass spectrometry: those who develop and commercialise MS equipment and those who use it as a tool in proteomic sciences. Six expert users and six representatives of leading MS instrument companies were thus invited to actively participate in this round table and share their points of view. The main objectives of this round table were not only to share experiences, but also to share dreams regarding MS technology and discuss the actual limits. It also focused on what MS users presently expect from MS producers and what are the current priorities in terms of development, for the benefit of all parties. Although it was one of the final events of the meeting, this MS round table attracted an audience of some fifty participants of the congress who were actively involved in the debate.
Rel-Associated pp40: an Inhibitor of the Rel Family of Transcription Factors (1991)

The Rel-associated protein pp40 is functionally related to I kappa B, an inhibitor of the transcription factor NF-kappa B. Purified pp40 inhibits the DNA binding activity of the NF-kappa B protein complex (p50:p65 heterodimers), p50:c-Rel heteromers, and c-Rel homodimers. The sequence of the complementary DNA encoding pp40 revealed similarity to the gene encoding MAD-3, a protein with mammalian I kappa B-like activity. Protein sequencing of I kappa B purified from rabbit lung confirmed that MAD-3 encodes a protein similar to I kappa B. The sequence similarity between MAD-3 and pp40 includes a casein kinase II and consensus tyrosine phosphorylation site, as well as five repeats of a sequence found in the human erythrocyte protein ankyrin. These results suggest that rel-related transcription factors, which are capable of cytosolic to nuclear translocation, may be held in the cytosol by interaction with related cytoplasmic anchor molecules.
Impact of Persistent Iatrogenic Atrial Septal Defect following MitraClip (2022)

Notwithstanding higher RV pressures, patients with persistent iASD had no hemodynamic compromise and an equal prognosis compared with those without a residual atrial defect after a TEER procedure. These findings support the mid-term safety of procedures in which an interatrial defect needs to be created and would argue against the need for interventional closure.
Comparison of the Thermal Degradation of Heavily Nb-Doped and Normal PZT Thin Films (2017)

The degradation of niobium-doped lead zirconate titanate (PZT) and two types of PZT thin films were investigated. Undoped PZT, two-step PZT, and heavily Nb-doped PZT (PNZT) around the morphotropic phase boundary were in situ deposited under optimum condition by RF-magnetron sputtering. All 2- [Formula: see text]-thick films had dense perovskite columnar grain structure and self-polarized (100) dominant orientation. PZT thin films were deposited on Pt/TiO<sub>x</sub> bottom electrode on Si wafer, and PNZT thin film was on Ir/TiW electrode with the help of orientation control. Sputtered PZT films formed on microelectromechanical system (MEMS) gyroscope and the degradation rates were compared at different temperatures. PNZT showed the best resistance to the thermal degradation, followed by two-step PZT. To clarify the effect of oxygen vacancies on the degradation of the film at high temperature, photoluminescence measurement was conducted, which confirmed that oxygen vacancy rate was the lowest in heavy PNZT. Nb-doping PZT thin films suppressed the oxygen deficit and made high imprint with self-polarization. This defect distribution and high internal field allowed PNZT thin film to make the piezoelectric sensors more stable and reliable at high temperature, such as reflow process of MEMS packaging.
Growth hormone acutely decreases type III iodothyronine deiodinase in chicken liver (1992)

Growth hormone (GH) increases plasma T3 and decreases plasma T4 in 18-day old chicken embryos, in newly hatched chicks and in adult chickens within 2 h after injection. The in vivo increase in T3 can be linked to an increased in vitro T3 recovery from liver homogenates incubated with T4. Specific type I and type III deiodinase tests (5'D-I and 5D-III), however, show that GH has no effect at all on the amount of hepatic type I enzyme (catalyzing T4 deiodination to T3) but acutely decreases the amount of type III enzyme (catalyzing T3 deiodination). This suggests that the GH-induced increase in plasma T3 is not due to an increased T3 production, but is the result of a decreased T3 breakdown. The lack of a stimulatory effect of GH injection in 3-day-old fed chicks might be the combined result of a low hepatic type III enzyme level and a low GH receptor availability at that stage.
Hemorrhagic Shock-induced Bacterial Translocation: The Role of Neutrophils and Hydroxyl Radicals (1990)

We previously documented a relationship between xanthine oxidase activation, intestinal injury, and bacterial translocation (BT) in rats subjected to hemorrhagic shock. The current experiments were performed to determine the relative roles of hydroxyl radicals and neutrophils in the pathogenesis of shock-induced mucosal injury and BT. The incidence of BT was higher in the shocked rats (30 mm Hg for 30 min) than the sham-shock controls (87% vs 12.5%; p less than 0.01). Administration of the hydroxyl radical scavenger, dimethyl sulfoxide (DMSO), or the iron chelator, deferoxamine, reduced the incidence of BT from 87% to 20% and 40%, respectively (p less than 0.05). DMSO and deferoxamine appear to prevent shock-induced BT by blunting the magnitude of shock-induced mucosal injury. In contrast, neutrophil depletion did not prevent BT or protect the intestinal mucosa in shocked rats. Instead, the incidence of systemic spread of translocating bacteria past the mesenteric lymph nodes to the livers and spleens of the shocked rats was higher in the neutrophil-depleted rats (56%) than in any other group (p less than 0.01). Thus, shock-induced BT and intestinal injury appear to be mediated by oxidants (.OH) derived from xanthine oxidase, rather than granulocytes.
Atomic resolution electron probe magnetic circular dichroism measurements enabled by patterned apertures (2019)

Atomic resolution electron probe magnetic circular dichroism measurements enabled by patterned apertures
Inducing Dose Sparing with Inactivated Polio Virus Formulated in Adjuvant CAF01 (2014)

The development of new low cost inactivated polio virus based vaccines (IPV) is a high priority, and will be required to eradicate polio. In addition, such a vaccine constitutes the only realistic polio vaccine in the post-eradication era. One way to reduce the cost of a vaccine is to increase immunogenicity by use of adjuvants. The CAF01 adjuvant has previously been shown to be a safe and potent adjuvant with several antigens, and here we show that in mice IPV formulated with CAF01 induced increased systemic protective immunity measured by binding and neutralization antibody titers in serum. CAF01 also influenced the kinetics of both the cellular and humoral response against IPV to produce a faster, as well as a stronger, response, dominated by IgG2a, IgG2b, and IgG2c isotypes as well as IPV specific T cells secreting IFN-γ/IL-2. Finally, as intestinal immunity is also a priority of polio vaccines, we present a vaccine strategy based on simultaneous priming at an intradermal and an intramuscular site that generate intestinal immune responses against polio virus. Taken together, the IPV-CAF01 formulation constitutes a new promising vaccine against polio with the ability to generate strong humoral and cellular immunity against the polio virus.