gebhart/patrepeval huggingface dataset:
Analysis of mutations in the ninR region of bacteriophage lambda that bypass a requirement for lambda N antitermination (1990)

Two mutations in the ninR region of bacteriophage lambda that bypass a requirement for antitermination have been studied. One mutation, byp, has been cloned and mapped by marker rescue to a 417-base-pair segment in the ninR region of the genome. Analysis of the byp mutation by using promoter detection vectors, DNA sequencing, and S1 nuclease analysis showed that the byp mutation created a new promoter that transcribed gene Q. The second mutation analyzed was the deletion nin3. Sequence analysis revealed that 2,485 base pairs of the ninR region were removed, beginning within the ren gene and ending in an open reading frame termed ninG. The tR2 and tR3 terminators, and probably others, were removed by the nin3 deletion, thereby allowing the phage to be N independent and to grow in hosts defective for Nus antitermination factors.
Effects of graded inclusion levels of raw garbanzo beans on apparent total tract digestibility, fecal quality, and fecal fermentative end-products and microbiota in extruded feline diets (2021)

Garbanzo beans (GB; Cicer arietinum) are a readily available pulse crop that have gained popularity as a plant-based protein source in the pet food industry. However, raw GB contain anti-nutritional factors that can reduce digestibility and cause digestive upsets in pets that are undesirable to owners. The objective of this study was to determine the effects of the inclusion of raw or cooked GB in extruded feline diets on macronutrient digestibility, gastrointestinal tolerance, and fermentative end-products in cats. Five diets were formulated to contain raw GB at 0%, 7.5%, 15%, or 30% or cooked GB at 30%. Ten adult, male cats (mean age: 1.0 ± 0.0 yr, mean BW: 4.7 ± 0.4 kg) were used in a replicated 5 × 5 Latin square design. Each period consisted of 14 d, with 10 d of diet adaptation followed by 4 d of total fecal and urine collection. At the end of each period, 4 mL of blood were collected and analyzed for a serum chemistry and complete blood count to ensure all animals remained healthy throughout the study. Cats were fed twice daily and food intake was calculated to maintain body weight. Food intake was highest (P < 0.05) for cats fed 0% raw GB (72.2 g/d, dry matter basis [DMB]) compared with GB inclusions of 7.5% or greater (average 70.3 g/d, DMB). Dry matter and organic matter apparent total tract digestibility (ATTD) were lowest (P < 0.05) for cats consuming the 30% cooked GB diet (77.3% and 81.7%, respectively). Cats fed 7.5% raw GB had greater (P < 0.05) crude protein ATTD (86.2%) than cats fed 15% raw GB (82.3%) or 30% cooked GB (81.6%). Total short-chain fatty acid concentrations were highest (P < 0.05) for 30% cooked GB at 682 μmol/g but not different (P > 0.05) than 15% GB (528 μmol/g) or 30% raw GB (591 μmol/g) diets. In terms of fecal microbial abundance, the predominant phyla were Firmicutes, Bacteroidota, and Actinobacteria. Cats fed the 0% GB diet had a greater relative abundance of Firmicutes (62.1%) and Fusobacteria (4.0%) than the remaining diets (average 54% and 1.6%, respectively). In conclusion, all inclusion levels of raw GB resulted in high digestibility (average > 80%) and ideal fecal scores (average 2.9), demonstrating their adequacy as a protein source in feline diets up to a 30% inclusion level.
Artroplastia Total do Quadril sem Cimentação de Segunda Geração (2001)

JBJS was founded by the American Orthopaedic Association in 1903 and is the Official Journal of the American Orthopaedic Association. EXCELLENCE THROUGH PEER REVIEW The Journal of Bone & Joint Surgery (JBJS) has been the most valued source of information for orthopaedic surgeons and researchers for over 125 years and is the gold standard in peer-reviewed scientific information in the field. A core journal and essential reading for general as well as specialist orthopaedic surgeons worldwide, JBJS publishes evidence-based research to enhance the quality of care for orthopaedic patients. Standards of excellence and high quality are maintained in everything we do, from the science of the content published to the customer service we provide. JBJS is an independent, non-profit journal. JBJS.org is the version of record of The Journal of Bone & Joint Surgery. JBJS is published twice a month on the first and third Wednesday of each month, each time adding to a comprehensive PDF archive dating back to 1889. Additional features online include: article commenting, social sharing links, instructional videos, podcasts, and continuing medical education activities. Contributions from anywhere in the world are welcome and considered on their merits. The manuscript must be written in English and should be submitted as outlined in the Instructions for Authors. Manuscripts are subject to blinded peer review by experts and a final decision by the editor. Papers are judged by the quality and relevance of the work. Our aim is to publish the best material available from anywhere in the world.
The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3′ end of 16S rRNA (2011)

Era, composed of a GTPase domain and a K homology domain, is essential for bacterial cell viability. It is required for the maturation of 16S rRNA and assembly of the 30S ribosomal subunit. We showed previously that the protein recognizes nine nucleotides ( ) near the 3' end of 16S rRNA, and that this recognition stimulates GTP-hydrolyzing activity of Era. In all three kingdoms of life, the sequence and helix 45 (h45) (nucleotides 1506-1529) are highly conserved. It has been shown that the to double mutation severely affects the viability of bacteria. However, whether Era interacts with G1530 and/or h45 and whether such interactions (if any) contribute to the stimulation of Era's GTPase activity were not known. Here, we report two RNA structures that contain nucleotides 1506-1542 (RNA301), one in complex with Era and GDPNP (GNP), a nonhydrolysable GTP-analogue, and the other in complex with Era, GNP, and the KsgA methyltransferase. The structures show that Era recognizes 10 nucleotides, including G1530, and that Era also binds h45. Moreover, GTPase assay experiments show that G1530 does not stimulate Era's GTPase activity. Rather, A1531 and A1534 are most important for stimulation and h45 further contributes to the stimulation. Although G1530 does not contribute to the intrinsic GTPase activity of Era, its interaction with Era is important for binding and is essential for the protein to function, leading to the discovery of a new cold-sensitive phenotype of Era.
Design of VLSI‐oriented radix‐4 signed‐digit arithmetic circuits using multiple‐valued logic (1987)

Abstract Radix‐4 signed‐digit (SD) arithmetic circuits using multiple‐valued logic are proposed from the viewpoint of VLSI implementation. Because of the property of sign‐symmetry in the SD number representation, a new bi‐directional current‐mode MOS technology is employed very effectively in implementing very fast and compact SD arithmetic circuits. These basic operations are simulated and evaluated using SPICE2. Finally, it is demonstrated that these arithmetic circuits can be fabricated using 2 um CMOS technology. For example, a multiply time of 40 ns can be achieved in the SD multiplier with a 17 × 16 bit precision.
Nasal Continuous Positive Airway Pressure Treatment: Current Realities and Future (1996)

Nasal continuous positive airway pressure (CPAP) is a highly effective treatment for obstructive sleep apnea syndrome. The apnea/hypopnea index (AHI) is reduced 10-fold, but the patient dropout rate is up to 30%, and usage is typically < 5 hours per night. Titration, designed to make the best trade-off between effectiveness and side effects, is expensive. Autotitrating devices make this trade-off on a minute-by-minute basis, potentially reducing mean pressure delivery, reducing side effects, and increasing compliance. The aim of this study was to test the effectiveness of the AutoSet self-adjusting nasal CPAP system (ResMed, Sydney, Australia) in eliminating obstructive events and normalizing the arousal index. Forty-five subjects (41 males and 4 females with AHI) values of > 20/hour were recruited, with written informed consent. Subjects slept for a diagnostic night, followed by a treatment night, in the laboratory, using the AutoSet system with full polysomnographic monitoring of respiratory and sleep variables. Arousals were scored using ASDA criteria. Hypopneas were scored when there was a 50% reduction in ventilation for > 10 seconds, associated with a 4% drop in oxygen saturation. For comparison, the ASDA arousal index in 16 normal subjects (without nasal CPAP) is provided. Results are given as mean +/- standard error of the mean. AHI was reduced from 55 +/- 3 to 1.5 +/- 0.35 events/hour (p < 0.0001). The arousal index was reduced from 65 +/- 3 to 18 +/- 2 events/hour (p < 0.0001), identical to the value in the 16 healthy normal subjects. There was a 158% +/- 21% increase in slow-wave sleep (p = 0.01) and a 186% +/- 27% increase in rapid eye movement sleep (p = 0.013). The AutoSet self-adjusting nasal CPAP system adequately treats obstructive sleep apnea syndrome on the first night under laboratory conditions.
Bounded Partial-Order Reduction Proof Companion Source Material (2013)

Definition 1.6. Preemption-bound persistent sets. A set T ⊆ T of transitions enabled in a state s = final(S) is preemption-bound persistent in s iff for all nonempty sequences α of transitions from s in AG(Pb,c) such that ∀i ∈ dom(α), αi 6∈ T and for all t ∈ T , 1. Pb(S.t) ≤ Pb(S.α1) 2. if Pb(S.t) < Pb(S.α1), then t↔ last(α) and t↔ next(final(S.α), last(α).tid) 3. if Pb(S.t) = Pb(S.α1), then ext(s, t)↔ last(α) and ext(s, t)↔ next(final(S.α), last(α).tid)
Atypical antibody responses to influenza (2018)

Influenza viruses undergo rapid antigenic evolution and reassortment, resulting in annual epidemics and the occasional pandemics. Exposure to influenza virus hemagglutinin (HA) and neuraminidase (NA) antigen, either through vaccination or infection, induces an antibody response able to recognize only the homologous antigenic subtype. However, atypical antibody responses recognizing non-homologous influenza subtypes have been reported during infection and vaccination. Here, we review the incidence of these phenomena in published literature and discuss the potential mechanisms underlying them.
Investigation of the Lithium Solid Electrolyte Interphase in Vinylene Carbonate Electrolytes Using Cu||LiFePO4Cells (2017)

The influence of vinylene carbonate (VC) on the plating/stripping of lithium was investigated using Cu||LiFePO4 cells. These cells allow for easy fabrication and in-situ generation of lithium, with no excess lithium to influence performance. Addition of VC to the electrolyte improves both capacity retention and efficiency. IR and XPS spectroscopy of the surface of the plated lithium suggests the presence of a significant amount of poly(VC) when the electrolyte (1.2 M LiPF6 in ethylene carbonate (EC): ethyl methyl carbonate (EMC) (3:7, vol)) contains 5% of added VC. This suggests employing additives that generate polymeric species on the surface of lithium improves plating/stripping performance in carbonate electrolytes.
Supplementary Figure S1 from Efficacy and Determinants of Response to HER Kinase Inhibition in <i>HER2</i>-Mutant Metastatic Breast Cancer (2023)

&lt;p&gt;PFS of (A) neratinib plus fulvestrant combination cohort and (B) neratinib monotherapy cohort. CI, confidence interval; PFS, progression-free survival.&lt;/p&gt;
Supplementary Figure 3 from Fibroblast Growth Factor Receptor 4 Regulates Tumor Invasion by Coupling Fibroblast Growth Factor Signaling to Extracellular Matrix Degradation (2023)

Supplementary Figure 3 from Fibroblast Growth Factor Receptor 4 Regulates Tumor Invasion by Coupling Fibroblast Growth Factor Signaling to Extracellular Matrix Degradation
ChemInform Abstract: Design, Synthesis, and Biological Activity of Novel Purine and Bicyclic Pyrimidine Factor Xa Inhibitors. (1999)

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
A model for a molecular mechanism of anticoagulant activity of 3-substituted 4-hydroxycoumarins (1980)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTA model for a molecular mechanism of anticoagulant activity of 3-substituted 4-hydroxycoumarinsRichard B. SilvermanCite this: J. Am. Chem. Soc. 1980, 102, 16, 5421–5423Publication Date (Print):July 1, 1980Publication History Published online1 May 2002Published inissue 1 July 1980https://pubs.acs.org/doi/10.1021/ja00536a064https://doi.org/10.1021/ja00536a064research-articleACS PublicationsRequest reuse permissionsArticle Views244Altmetric-Citations30LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
The temporal and contextual stability of activity levels in hippocampal CA1 cells (2022)

Abstract Recent long-term optical imaging studies have demonstrated that the activity levels of hippocampal neurons in a familiar environment change on a daily to weekly basis. However, it is unclear whether there is any time-invariant property in the cells’ neural representations. In this study, using miniature fluorescence microscopy, we measured the neural activity of the mouse hippocampus in four different environments every 3 days. Although the activity level of hippocampal neurons fluctuated greatly in each environment across days, we found a significant correlation between the activity levels for different days, and the correlation was higher for averaged activity levels across multiple environments. When the number of environments used for averaging was increased, a higher activity correlation was observed. Furthermore, the number of environments in which a cell showed activity was preserved. Cells that showed place cell activity in many environments had greater spatial information content, and thus carried a higher amount of information about the current position. In contrast, cells that were active only in a small number of environments provided sparse representation for the environment. These results suggest that each cell has not only an inherent activity level but also play a characteristic role in the coding of space. Significance Statement Recent studies have revealed that place cell activity in the hippocampal CA1 cells exhibit instability on a daily to weekly scale. However, it is unclear whether there is any invariant property in the activity of the cells. In this study, we found that, although the activity level of CA1 neurons fluctuated greatly in one environment, the mean activity level across multiple environments was more stable. Furthermore, the number of environments in which a cell showed activity was preserved over time. These results suggest that even though the spatial code changes dynamically, each cell has an inherent activity level and plays a characteristic role in spatial coding.
Spindichteverteilung in Radikalen, III1). Die Beteiligung von Phenylresten an der Aroxylmesomerie (1965)

Abstract Aus ESR‐Untersuchungen an 15 verschiedenartig substituierten 2.6‐Di‐tert.‐butyl‐4‐phenyl‐phenoxylen, deren Synthese beschrieben wird, muß für die 4‐Phenylgruppe eine der tert.‐Butylgruppe ähnliche Substituentenwirkung auf das Aroxylringsystem angenommen werden. Die Summe der freien Spindichtenwerte im 4‐Phenylring wird zu etwa +7% abgeschätzt. Dabei sind die Kopplungsparameter der Protonen an den C‐Atomen 3, 5, 2′, 4′ und 6′ bei ein und derselben Verbindung innerhalb der Meßgenauigkeit identisch. Verschiedenartige Substitution des 4‐Phenylringes [Br, C 6 H 5 , CH 3 , C(CH 3 ) 3 , OCH 3 ] ändert diese Symmetrie nur unwesentlich.
Outcomes of Radial Versus Femoral Access in Patients With Severe Aortic Stenosis Undergoing Percutaneous Coronary Intervention Prior to Transcatheter Aortic Valve Replacement (2022)

Radial access for pre-TAVR PCI is feasible and safe and is associated with a lower rate of access-site hematoma. This study supports the increased use of transradial access for pre-TAVR PCI.
ChemInform Abstract: Reactions of t‐Butylphosphine—Borane with Various Electrophiles and Synthesis of Optically Active t‐Butylmethylphosphine—Borane. (2002)

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
Preface: Dialog with Robots (2010)

This report contains 43 contributed articles and extended abstracts, spanning a variety of research topics and areas. The common denominators for these contributions are the notions of dialog and robots, and more generally those of interaction, physical embodiment, and context.
Glucose Metabolism in the Basal State and during a Two-Hour Glucose Infusion in Low Insulin Responders and Control Subjects (1982)

Glucose metabolism was studied in eight low insulin responders to glucose and eight controls using a primed-constant tracer infusion technique. The tracer was 3-3H-glucose. The former group demonstrated a lower IVGTT than the controls, although the K-values were well within the normal range. They also attained higher blood glucose levels during iv administration of high and low glucose loads. Glucose turnover studies revealed normal hepatic glucose production, normal total glucose uptake and normal metabolic clearance of glucose in the low responders as a group. The findings suggest normal sensitivity to insulin in these subjects, and imply that the low insulin response is the sole mediator of the observed lowering in IVGTT.
Thermal Challenges in Next-Generation Electronic Systems (2008)

Thermal challenges in next-generation electronic systems, as identified through panel presentations and ensuing discussions at the workshop, Thermal Challenges in Next Generation Electronic Systems, held in Santa Fe, NM, January 7-10, 2007, are summarized in this paper. Diverse topics are covered, including electrothermal and multiphysics codesign of electronics, new and nanostructured materials, high heat flux thermal management, site-specific thermal management, thermal design of next-generation data centers, thermal challenges for military, automotive, and harsh environment electronic systems, progress and challenges in software tools, and advances in measurement and characterization. Barriers to further progress in each area that require the attention of the research community are identified.
Ruthenium Half‐Sandwich Complexes Bound to Protein Kinase Pim‐1 (2006)

Keeping in shape with half a sandwich: The structure of a picomolar organoruthenium inhibitor bound to the ATP-binding site of the protein kinase Pim-1 (see picture) demonstrates that the ruthenium center has solely a structural role in organizing the organic ligands in the three-dimensional receptor space, thus yielding a structure that is complementary in shape and functional group presentation to the active site of Pim-1.
Effects of thermal protection methods on haptic perception (2011)

Electric DC motors that convert electric current to torque are the most common type of actuators used in haptic interfaces. However, high currents necessary to deliver large haptic forces can generate heat in the electromagnetic coils, and in the extreme can cause malfunctions due to overheating. It is therefore necessary to add thermal protection mechanisms to limit the output current. While this is a common feature of haptic devices, it is not clear what makes a superior current limiting method or what effect such limits have on haptic perception. The current work evaluates three methods for current limiting: limit output to zero, limit output to a safe steady-state current, limit output current in linear proportion to temperature. Using both quantitative and qualitative metrics, these are compared to a control case with no current limit. Human subjects use one finger of a multi finger haptic device to perform a psychophysical thresholding experiment designed to measure human perception of small haptic effects, while forcing the device to heat up. All methods are shown to effectively regulate temperature and show no statistically significant difference in psychophysical threshold value. Users show a slight preference for the linear method, while the zero output method requires less time spent interacting with current limited conditions.