gebhart/patrepeval huggingface dataset:
Exclusive free radical mechanisms of cellular photosensitization. (1998)

In order to determine the specific effects of radical-induced reactions in the absence of complicating excited-state pathways, four different thiohydroxamic esters and their parent molecule, N-hydroxypyridine-2(1H)-thione, have been studied in murine L1210 leukemia cells for their ability to produce photobiological damage. Irradiation (lambda exc = 355 nm) of cells in the presence of thiopyridone esters, specific photolytic precursors of sulfur-, carbon- and oxygen-centered radicals, caused toxicity that was unambiguously demonstrated to result from radical photosensitization mechanisms. Cellular morphological changes were observed following irradiation but apoptosis was not found to take place. A good correlation was evident between lipid peroxidation, measured by the thiobarbituric acid method, and phototoxicity, assessed by the trypan blue exclusion assay, indicating that the ester derivatives exert their effects mainly in plasma and/or subcellular membranes. Irradiation performed under deaerated conditions also induced significant phototoxicity but the effects of deaeration were dependent on the ester used and are discussed in terms of the nature of the primary radical species generated in each case. Irradiation of L1210 cells in the presence of N-hydroxypyridine-2(1H)-thione, a nonspecific, photochemical source of hydroxyl radical, was also found to trigger phototoxicity and lipid peroxidation. However in this case, photodamage cannot yet be definitely attributed to a radical or type II mechanism although the apparent oxygen independence of phototoxicity would indicate that type II contribution is not significant.
Aptameric enzyme subunit for homogeneous protein sensing (2007)

We have developed an aptameric enzyme subunit (AES) for protein sensing. AES is composed of an enzyme-inhibiting aptamer and a target molecule-binding aptamer and it can allosterically control the corresponding enzyme activity by binding target molecules. Here, we applied AES to immunoglobulin E (IgE) sensing. We split the thrombin-inhibiting aptamer into two oligonucleotides and then connected IgE-binding aptamer and its complementary strand to the split thrombin-inhibiting aptamer. The hybrid of these two oligonucleotides inhibited thrombin enzymatic activity and it was decreased in the presence of IgE. We were able to detect IgE by using the AES in homogeneous assay and detection limit was 250 nM.
The effect of thiadiazole out-backbone displacement in indacenodithiophene semiconductor polymers (2014)

We explore the effect of moving the well-known thiadiazole unit away from the polymer backbone on polymer optoelectronic properties and ultimately on device performance.
Interconversions of Structural Isomers of [PdAu8(PPh3)8]2+ and [Au9(PPh3)8]3+ Revealed by Ion Mobility Mass Spectrometry (2018)

Collision cross sections (CCSs) of ligand-protected metal clusters were evaluated using ion mobility mass spectrometry. The targets used in this study were phosphine-protected clusters [PdAu8(PPh3)8]2+ and [Au9(PPh3)8]3+, for which the total structures have been resolved by single-crystal X-ray analysis. The arrival time distributions of [PdAu8(PPh3)8]2+ as a function of the He flow rate in a cell located just in front of a traveling wave ion mobility cell filled with N2 buffer gas demonstrated that it got converted to another structural isomer having a smaller CCS, with the increase in the nominal collision energy. A similar phenomenon was observed for [Au9(PPh3)8]3+. These results were explained by the collisional excitation and cooling with the buffer gas inducing the conversion of the packing arrangement of the ligands rather than the atomic structure of the metallic core: the ligand layer was converted from disordered to the closely packed arrangement found in a single crystal during this process. This study showed that the ligand layer with a disordered arrangement in solution was retained during desolvation upon electrospray ionization and was annealed into the most stable closely packed arrangement by collisions.
Phage Display Technology: A Tool to Explore the Diversity of Inhibitors to Blood Coagulation Factor VIII (2000)

Hemophilia A is a X-linked bleeding disorder that is caused by the functional absence of blood coagulation factor VIII. The bleeding tendency in hemophilia A patients can be corrected by the administration of plasma-derived or recombinant factor VIII concentrates. A serious complication in hemophilia care is the development of factor VIII neutralizing antibodies (inhibitors) that arise as a consequence of factor VIII replacement therapy. The majority of factor VIII inhibitors are directed toward epitopes located within the A2, A3, and C2 domains of factor VIII. In this article, we summarize current knowledge on the epitope specificity of factor VIII inhibitors. In addition, we will discuss recent information on the molecular characteristics of human anti-factor VIII antibodies generated by phage display technology.
D-Dimer and Exhaled CO2/O2 to Detect Segmental Pulmonary Embolism in Moderate-Risk Patients (2010)

In moderate-risk patients with a positive D-dimer, the et etCO(2)/O(2) less than 0.28 significantly increases the probability of segmental or larger PE and the etCO(2)/O(2) greater than 0.45 predicts the absence of segmental or larger PE on MDCTPA.
Linkage of a microsatellite marker to the canine copper toxicosis locus in Bedlington Terriers (1997)

In informative pedigrees where the marker is variable in the parents, it is possible to identify which dogs will require anticopper therapy and provide breeders with sound scientific advice about breeding strategies.
Calpain‐mediated degradation of G‐substrate plays a critical role in retinal excitotoxicity for amacrine cells (2008)

The role of neuronal N-methyl-D-aspartate (NMDA) receptor-mediated intracellular signaling has been elucidated in both physiological and pathological conditions. However, the details of relative vulnerability for excitotoxicity remain unknown. Retinal excitotoxicity is involved in various diseases leading to irreversible blindness. Here, we used the visual system and explored the mechanistic details of the NMDA-elicited intracellular events, especially in the amacrine cells, which are the most vulnerable type of neuron in the retina. G-substrate, a specific substrate of cyclic guanosine 3',5'-monophosphate (cGMP)-dependent protein kinase, is colocalized with amacrine cells and acts as an endogenous inhibitor of protein phosphatase. To elucidate how G-substrate was involved in NMDA-induced amacrine cell death, the immunohistochemical analysis with G-substrate antibody was performed following NMDA injury. In vivo, NMDA immediately decreased G-substrate immunoreactivity, and the suppression of calpain activation using ALLN or calpain III, an inhibitor of calpain, blocked this decrease. In vitro, degraded fragments of G-substrate were detected within 10 min after coincubation of G-substrate and calpain. Moreover, G-substrate knockout (G-substrate(-/-)) mice were more susceptible to NMDA injury than wild-type mice. ALLN did not have a neuroprotective effect in G-substrate(-/-) mice. These data strongly suggest that calpain-mediated loss of G-substrate represents an important mechanism contributing to NMDA-induced amacrine cell death.
Dynamic light scattering from acoustic modes in single-walled carbon nanotubes (2003)

We report here the computation and measurement of inelastic light scattering from acoustic vibrational modes in single-walled carbon nanotubes (SWNT's). The measurement was made possible by the preparation of a sample of oriented SWNT's, partially aligned by means of a magnetic field. Long-wavelength confined longitudinal acoustic modes are described by a shell model. Their interaction with light is described by a surface elasto-optic effect. From the dispersion relations of acoustic modes we obtain an estimate of the two-dimensional Young's modulus of the single curved graphenic plane forming the SWNT. The result is consistent with the reported SWNT elastic properties.
Expression of GDNF and its receptors in developing tooth is developmentally regulated and suggests multiple roles in innervation and organogenesis (1997)

Glial cell line-derived neurotrophic factor (GDNF) is a recently identified survival factor for several populations of neurons in the central and peripheral nervous system that also regulates kidney development. To study the roles of GDNF in the regulation of tooth innervation and formation, we analyzed by in situ hybridization the expression patterns of GDNF and its receptors Ret, GDNF family receptor alpha-1 (GFRalpha-1), and GFRalpha-2 from the initiation of first molar formation to the completion of crown morphogenesis. At the time of trigeminal axon ingrowth, GDNF mRNAs were expressed in the mesenchyme around the tooth germ (i.e., target field of the dental innervation), suggesting that it is involved in the regulation of the embryonic tooth innervation. This hypothesis was supported by the ability of GDNF to induce neurite outgrowth from embryonic day 12 (E12) to E15 trigeminal ganglia. This timing correlated with the appearance of Ret in the subset of cells in the trigeminal ganglion at E12, whereas GFRalpha-1 and GFRalpha-2 receptors were constantly expressed in trigeminal ganglion during E11-E15. After birth, GDNF expression showed apparent correlation with the ingrowth and presence of trigeminal nerve fibers in the tooth, suggesting that GDNF is involved in the regulation of innervation of the dental papilla and dentin postnatally. Ret, GFRalpha-1, and GFRalpha-2 mRNAs were expressed in the dental epithelial and mesenchymal cells at stages when epithelial-mesenchymal signalling regulates critical steps of tooth morphogenesis. Ret and GFRalpha-2 were colocalized in the dental mesenchyme during bud and cap stages. Expression of GFRalpha-1 associated with the formation of the epithelial enamel knot, which is a putative embryonic signalling center regulating tooth shape. During postnatal development, GDNF and its receptors were expressed in dental papilla mesenchyme. In addition, GDNF and GFRalpha-1 transcripts were seen in the preodontoblasts and odontoblasts, suggesting that they may be involved in differentiation and maintenance of functional properties of the odontoblasts. Taken together, these results suggest that GDNF acts as a target-derived neurotrophic factor during tooth innervation. In addition, GDNF and its receptors may have nonneuronal organogenetic functions during tooth morphogenesis.
Scale‐up analysis of autothermal operation of methane oxidative coupling with La2O3/CaO catalyst (2020)

Abstract The exothermicity of oxidative coupling of methane (OCM) renders a cooled packed‐bed reactor impractical or impossible. Recently, we proposed an adiabatic autothermal reactor as a solution to this problem and reported the first results for stable autothermal operation (AO) with feed at ambient temperature. AO on the ignited branch is possible only in the region of steady‐state multiplicity. High per‐pass conversion and productivity requirements demand a stable ignited branch at the lowest possible feed temperature and high flow rate. To achieve OCM scale‐up, many conditions must be satisfied simultaneously. Using a kinetic model for La 2 O 3 / CaO catalyst, we examine the impact of space time, feed methane to oxygen ratio, feed temperature, particle size, inter‐phase heat and mass transfer gradients, pore‐diffusion, bed scale heat/mass dispersion on the region of AO for large scale adiabatic packed‐bed reactors. We show that while it is possible to achieve CH 4 conversion of about 20% and C 2 selectivity of about 80% in scaled‐up reactors, these values are sensitive to the design and operating parameters.
INTERLEUKIN-2 BASED IMMUNOTHERAPY FOR METASTATIC RENAL CELL CARCINOMA WITH THE KIDNEY IN PLACE (1999)

Select patients may be treated with IL-2 based immunotherapy with the primary renal tumors in place with morbidity. A randomized study is needed to assess the role of cytoreductive nephrectomy for treating metastatic renal cell carcinoma.
Galileo GIOVE : A Broadcast E5 Codes and their Application to Acquisition and Tracking (2007)

Godkänd; 2007; 20101011 (andbra)
Sorafenib inhibits endogenous and IL-6/S1P induced JAK2-STAT3 signaling in human neuroblastoma, associated with growth suppression and apoptosis (2012)

Neuroblastoma is the most common extracranial solid tumor in the pediatric population. Sorafenib (Nexavar), a multikinase inhibitor, blocks cell proliferation and induces apoptosis in certain types of cancers. Here, we tested antitumor effects of sorafenib (≤ 10 µM) on four human neuroblastoma cell lines, CHLA255, CHLA171, CHLA90 and SK-N-AS. Sorafenib inhibited cell proliferation and induced apoptosis of neuroblastoma tumor cells in a dose-dependent manner. Sorafenib inhibited phosphorylation of Signal Transducer and Activator of Transcription 3 (STAT3) proteins at Tyr705 in these cells, associated with inhibition of phosphorylated JAK2, an upstream kinase that mediates STAT3 phosphorylation. Expression of a constitutively-activated STAT3 mutant (pSTAT3-C) partially blocked the antitumor effects of sorafenib on neuroblastoma cells. Sorafenib also inhibited the phosphorylation of STAT3 induced by IL-6 and sphingosine-1-phosphate (S1P), a recently identified regulator for STAT3, in these tumor cells. Moreover, sorafenib downregulated phosphorylation of MAPK (p44/42) in neuroblastoma cells, consistent with inhibition of their upstream regulators MEK1/2. Sorafenib inhibited expression of cyclin E, cyclin D1/D2/D3, key regulators for cell cycle, and the antiapoptotic proteins Mcl-1 and survivin. Finally, sorafenib suppressed the growth of human neuroblastoma cells in a mouse xenograft model. Taken together, these findings suggest the potential use of sorafenib for the treatment of pediatric neuroblastomas.
Nitroxide Radicals with Cucurbit[n]urils and Other Cavitands (2018)

Abstract The interface of nitroxide radicals with cucurbit[ n ]urils (CB[ n ]) is covered in this review. Either used as spin probes, spin labels, or stoppers for paramagnetic rotaxanes, nitroxides offer new opportunities to investigate CB[ n ] and their inclusion complexes, especially thanks to EPR spectroscopy. On the other hand, CB[ n ] also offer interesting opportunities to modulate nitroxide properties such as protection or structuring. The multiple back and forth between the two well‐established areas where nitroxides bring information about CB[ n ], and CB[ n ] modulate nitroxide properties, have enabled to shed some light at this new interesting interface.
New Protein-Protein Interactions Identified for the Regulatory and Structural Components and Substrates of the Type III Secretion System of the PhytopathogenXanthomonas axonopodisPathovar citri (2004)

We have initiated a project to identify protein-protein interactions involved in the pathogenicity of the bacterial plant pathogen Xanthomonas axonopodis pv. citri. Using a yeast two-hybrid system based on Gal4 DNA-binding and activation domains, we have focused on identifying interactions involving subunits, regulators, and substrates of the type III secretion system coded by the hrp (for hypersensitive response and pathogenicity), hrc (for hrp conserved), and hpa (for hrp associated) genes. We have identified several previously uncharacterized interactions involving (i) HrpG, a two-component system response regulator responsible for the expression of X. axonopodis pv. citri hrp operons, and XAC0095, a previously uncharacterized protein encountered only in Xanthomonas spp.; (ii) HpaA, a protein secreted by the type III secretion system, HpaB, and the C-terminal domain of HrcV; (iii) HrpB1, HrpD6, and HrpW; and (iv) HrpB2 and HrcU. Homotropic interactions were also identified for the ATPase HrcN. These newly identified protein-protein interactions increase our understanding of the functional integration of phytopathogen-specific type III secretion system components and suggest new hypotheses regarding the molecular mechanisms underlying Xanthomonas pathogenicity.
Calcium and bone disease (2011)

Calcium transport and calcium signaling are of basic importance in bone cells. Bone is the major store of calcium and a key regulatory organ for calcium homeostasis. Bone, in major part, responds to calcium-dependent signals from the parathyroids and via vitamin D metabolites, although bone retains direct response to extracellular calcium if parathyroid regulation is lost. Improved understanding of calcium transporters and calcium-regulated cellular processes has resulted from analysis of genetic defects, including several defects with low or high bone mass. Osteoblasts deposit calcium by mechanisms including phosphate and calcium transport with alkalinization to absorb acid created by mineral deposition; cartilage calcium mineralization occurs by passive diffusion and phosphate production. Calcium mobilization by osteoclasts is mediated by acid secretion. Both bone forming and bone resorbing cells use calcium signals as regulators of differentiation and activity. This has been studied in more detail in osteoclasts, where both osteoclast differentiation and motility are regulated by calcium.
Embedding computers in a cellular array (1989)

article Free Access Share on Embedding computers in a cellular array Authors: C. Baleanu ICPE-CCE, Splaiul Unirii 313, 74299 Bucuresti - Romania ICPE-CCE, Splaiul Unirii 313, 74299 Bucuresti - RomaniaView Profile , D. Tomescu ICPE-CCE, Splaiul Unirii 313, 74299 Bucuresti - Romania ICPE-CCE, Splaiul Unirii 313, 74299 Bucuresti - RomaniaView Profile Authors Info & Claims ACM SIGARCH Computer Architecture NewsVolume 17Issue 5Sep. 1989 pp 108–115https://doi.org/10.1145/71302.71315Online:01 September 1989Publication History 0citation91DownloadsMetricsTotal Citations0Total Downloads91Last 12 Months0Last 6 weeks0 Get Citation AlertsNew Citation Alert added!This alert has been successfully added and will be sent to:You will be notified whenever a record that you have chosen has been cited.To manage your alert preferences, click on the button below.Manage my AlertsNew Citation Alert!Please log in to your account Save to BinderSave to BinderCreate a New BinderNameCancelCreateExport CitationPublisher SiteeReaderPDF
Multifunctional antibacterial dental sealants suppress biofilms derived from children at high risk of caries (2020)

Dental caries in children is a leading worldwide oral health concern. Combining antibacterial and remineralizing additives within dental sealants is a promising approach for caries prevention. Saliva contains oral bacteria that are indicative of the whole oral microbiome and may have the ability to reflect the dysbiosis present in patients with dental caries. Here, we used the saliva of children at a low and high risk of caries to culture microcosm biofilms resembling caries-associated microbial communities and investigated the changes in the biofilms promoted by the formulated dental sealants containing dimethylaminohexadecyl methacrylate (DMAHDM), a quaternary ammonium monomer, and nanoparticles of amorphous calcium phosphate (NACP). Ten volunteers were selected from each caries-risk condition for saliva collection. Biofilms were grown on the tested sealant samples using a 48 h-microcosm biofilm model. The biofilm growth, metabolic behavior, and bacterial acid production were combined with 16S rRNA sequencing analysis for the assessment of the biofilm grown over the material. The DMAHDM-NACP dental sealant formulations promoted a significant reduction in the population of mutans streptococci, total streptococci, lactobacilli, and total microorganisms in the biofilms regardless of the risk status of the donor child's saliva (p < 0.05). Metabolic and lactic acid production was greatly reduced when in contact with the DMAHDM-NACP sealants in both the sources of inoculum. The relative abundance of the Streptococcus genera derived from patients at a high risk of caries was reduced on contact with the antibacterial sealant. The dental sealant formulations were effective in modulating the growth of the biofilm derived from the saliva of children at a low and high risk of caries. The sealants formulated herein with dual functions and purpose for biointeractivity to prevent biofilm formation and mineral loss can be a reliable complementary strategy to decrease the incidence of carious lesions in children at a high risk of caries.
Analysis of Resistance State Stability in Ge-Rich PCM Devices under Voltage and Temperature Stress (2017)

session Device Reliability (ED11.6.04)
Are Herbicide mixtures useful for Delaying the Rapid Evolution of Resistance? a Case Study (1994)

Mixtures of herbicides have been proposed as strategies to prevent or delay the evolution of resistance to the resistance-prone sulfonylurea and imidazolinone herbicides that inhibit acetolactate synthase. These herbicides have become or are becoming widely used in soybean, wheat, rice, and other major crops. For a mixture to be efficacious in preventing resistance, the less resistance-prone component(s) should have the following traits compared to the vulnerable herbicide: a) control the same spectra of weeds; b) have the same persistence; c) have a different target site; d) be degraded in a different manner; and e) preferably exert negative cross-resistance. We compared the proposed mixing partners for use with several widely used acetolactate synthase inhibiting herbicides to these criteria and found that: a) all have somewhat different weed spectra; e.g. none control common cocklebur as well as imazaquin or imazethapyr in soybean, or kochia as well as chlorsulfuron in winter wheat; b) all are far less persistent than these vulnerable herbicides. Less persistent sulfonylureas are now on the market but are in limited use. Late in the season, the mixing partner is not present while the vulnerable herbicide remains active; c) most have different target sites; d) in soybean most mixing partners are degraded differently than vulnerable herbicides. In wheat virtually all herbicides used without safeners are degraded by monooxygenases, thus it is impossible to meet this criterion in this crop; e) none of the mixing partners exert negative cross-resistance. The present mixtures may have superior or more cost-effective weed control properties than the acetolactate synthase inhibitors used alone, but they do not meet all the criteria for resistance management. Not meeting the key criteria of identical control spectra and equal persistence aggravates future resistance problems, as has happened with insecticides.