gebhart/patrepeval huggingface dataset:
Angiotensin II stimulation of rapid paxillin tyrosine phosphorylation correlates with the formation of focal adhesions in rat aortic smooth muscle cells (1995)

Angiotensin II is a potent vasoconstrictor that has been also implicated in vascular hyperproliferative diseases, including atherosclerosis and restenosis following angioplasty. Treatment of cultured, serum-starved rat aortic smooth muscle cells with angiotensin II causes rapid protein tyrosine phosphorylation that precedes cell mitogenesis. We have identified two of the phosphoproteins as paxillin (75 kilodaltons) and the tyrosine kinase pp125Fak, both components of actin-associated focal adhesion sites. Angiotensin II stimulated a 5-fold increase in the tyrosine phosphorylation of paxillin and a smaller (1.5-fold) increase in pp125Fak tyrosine phosphorylation. Paxillin tyrosine phosphorylation was evident within 1 minute, and was maximal after 10 minutes. Similar elevated protein tyrosine phosphorylation levels of paxillin were obtained with exposure of the rat aortic smooth muscle cells to peptides endothelin-1 and alpha-thrombin that function, as angiotensin II, through binding to members of the seven transmembrane domain G protein coupled receptors. Angiotensin II treatment also stimulated the production of a well-ordered actin-containing stress fiber network and prominent paxillin-containing focal adhesions. The focal adhesions stained intensely with anti-phosphotyrosine antibody suggesting the tyrosine phosphorylation of paxillin and cytoskeletal reorganization were tightly coupled. Angiotensin II receptor occupancy has been shown previously to lead to protein kinase C activation. However, compared to angiotensin II stimulation, a smaller, delayed increase in paxillin tyrosine phosphorylation was observed following direct protein kinase C activation by the phorbol ester phorbol 12-myristate-13-acetate. Paxillin tyrosine phosphorylation was selective for certain agonists since no increase in tyrosine phosphorylation of this protein was observed following exposure to the potent mitogen PDGF. Thus, actin-based cytoskeletal changes involving sites of cell adhesion to the extracellular matrix may play an important role in normal and pathophysiologic smooth muscle cell growth regulation in response to certain angiotensin II-type vasoactive agonists.
Electromagnetic generation and attenuation of ultrasound in ferromagnetic metals. I (1980)

A theoretical model for the electromagnetic generation and detection of ultrasound in a ferromagnetic metal is described and developed. The model shows how the normal (Lorentz) processes are enhanced by a strong magnetoelastic coupling. It is used to deduce quantitative values for both the efficiency of generation and the attenuation coefficient of a transverse sound wave propagating parallel to an applied magnetic field in a single-domain sample of ferromagnetic nickel. The extension of the model to an unsaturated, multidomain sample is discussed.
African swine fever virus evasion of host defences (2019)

African swine fever virus causes a haemorrhagic fever in domestic pigs and wild boar. The continuing spread in Africa, Europe and Asia threatens the global pig industry. The lack of a vaccine limits disease control. To underpin rational strategies for vaccine development improved knowledge is needed of how the virus interacts with and modulates the host's responses to infection. The virus long double-stranded DNA genome codes for more than 160 proteins of which many are non-essential for replication in cells but can have important roles in evading the host's defences. Here we review knowledge of the pathways targeted by ASFV and the mechanisms by which these are inhibited. The impact of deleting single or multiple ASFV genes on virus replication in cells and infection in pigs is summarised providing information on strategies for rational development of modified live vaccines.
Stability of ,Aqueous a =Al203 Suspensions with Poly(methacry1ic acid) Polyelectrolyte (1988)

Stability of aqueous a-A1,O3 suspensions with Na+ salt of poly(methacry1ic acid) (PMAA-Na) polyelectrolyte was studied as a function of pH. At a given pH, the transition from the flocculated to the dispersed state corresponded to the ad-sorption saturation limit of the powders by the PMAA. As the pH was decreased, the adsorption saturation limit increased until insolubility and charge neutralizatioin of the PMAA was approached. The critical amount of PMAA required to achieve stability is outlined in a stability map. I.
ALLEVIATION OF COMPUTER INDUCED EYE DISCOMFORT SYNDROME AND ASSOCIATED LIPID LAYER CHANGES. (2000)

Third International Conference on the Lacrimal Gland, Tear Film and Dry Eye Syndromes: Basic Science and Clinical Relevance: Maui, Hawaii; November 15-18, 2000: Abstracts
Deep multiscale convolutional feature learning for weakly supervised localization of chest pathologies in X-ray images (2018)

Localization of chest pathologies in chest X-ray images is a challenging task because of their varying sizes and appearances. We propose a novel weakly supervised method to localize chest pathologies using class aware deep multiscale feature learning. Our method leverages intermediate feature maps from CNN layers at different stages of a deep network during the training of a classification model using image level annotations of pathologies. During the training phase, a set of \emph{layer relevance weights} are learned for each pathology class and the CNN is optimized to perform pathology classification by convex combination of feature maps from both shallow and deep layers using the learned weights. During the test phase, to localize the predicted pathology, the multiscale attention map is obtained by convex combination of class activation maps from each stage using the \emph{layer relevance weights} learned during the training phase. We have validated our method using 112000 X-ray images and compared with the state-of-the-art localization methods. We experimentally demonstrate that the proposed weakly supervised method can improve the localization performance of small pathologies such as nodule and mass while giving comparable performance for bigger pathologies e.g., Cardiomegaly
Nuclear Reactor Power Monitoring Using Silicon Carbide Semiconductor Radiation Detectors (2002)

Silicon carbide semiconductor neutron detectors are being developed for use as ex-vessel power monitors for pressurized water reactors. Key features such as neutron response, radiation resistance, and high-temperature operation have been explored for silicon carbide detectors, and the results are consistent with their use in the ex-vessel environment. Prototype silicon carbide ex-core neutron detectors have been assembled and tested under research reactor conditions simulating ex-core neutron monitoring requirements. Linear, pulse-mode operation without the need for gamma compensation has been demonstrated with these prototype detectors. The silicon carbide detectors are compared to presently deployed gas-filled ex-vessel detectors, and several advantages of the silicon carbide technology can be seen. It is anticipated that a wide-range silicon carbide neutron detector can be designed to replace the combined functions of the multiple power range detectors in use. Furthermore, the need for gamma-ray compensation will be eliminated, and more efficient reactor operation and simplified reactor operating procedures will result.
Initial Investigation of Preclinical Integrated SPECT and MR Imaging (2010)

Single-photon emission computed tomography (SPECT) can provide specific functional information while magnetic resonance imaging (MRI) can provide high-spatial resolution anatomical information as well as complementary functional information. In this study, we utilized a dual modality SPECT/MRI (MRSPECT) system to investigate the integration of SPECT and MRI for improved image accuracy. The MRSPECT system consisted of a cadmium-zinc-telluride (CZT) nuclear radiation detector interfaced with a specialized radiofrequency (RF) coil that was placed within a whole-body 4 T MRI system. The importance of proper corrections for non-uniform detector sensitivity and Lorentz force effects was demonstrated. MRI data were utilized for attenuation correction (AC) of the nuclear projection data and optimized Wiener filtering of the SPECT reconstruction for improved image accuracy. Finally, simultaneous dual-imaging of a nude mouse was performed to demonstrated the utility of co-registration for accurate localization of a radioactive source.
Impact of Spacing and Orientation on the Scar Threshold With a High-Density Grid Catheter (2019)

Spacing and orientation of bipoles impacts the accuracy of scar detection. Optimal threshold specific to each bipolar configuration should be determined. Selecting one best voltage point among multiple points projected on the same surface is also critical on the Ensite-system to increase the accuracy of scar-mapping.
Energy Dissipation in Chemical Reactions on Ultrafast Timescales (1991)

Abstract A series of picosecond experiments and computer simulations will be presented that test collisional and hydrodynamic models for vibrational relaxation in liquids. The relationships between isolated binary collision models (IBC) and stochastic dynamics will be presented. The appropriateness of IBC theory in describing vibrational relaxation in liquids will also be discussed.
Advanced quadratures and periodic boundary conditions in parallel 3D S{sub n} transport (2013)

Significant updates in numerical quadratures have warranted investigation with 3D Sn discrete ordinates transport. We show new applications of quadrature departing from level symmetric (S{sub 2}o). investigating 3 recently developed quadratures: Even-Odd (EO), Linear-Discontinuous Finite Element - Surface Area (LDFE-SA), and the non-symmetric Icosahedral Quadrature (IC). We discuss implementation changes to 3D Sn codes (applied to Hybrid MOC-Sn TITAN and 3D parallel PENTRAN) that can be performed to accommodate Icosahedral Quadrature, as this quadrature is not 90-degree rotation invariant. In particular, as demonstrated using PENTRAN, the properties of Icosahedral Quadrature are suitable for trivial application using periodic BCs versus that of reflective BCs. In addition to implementing periodic BCs for 3D Sn PENTRAN, we implemented a technique termed 'angular re-sweep' which properly conditions periodic BCs for outer eigenvalue iterative loop convergence. As demonstrated by two simple transport problems (3-group fixed source and 3-group reflected/periodic eigenvalue pin cell), we remark that all of the quadratures we investigated are generally superior to level symmetric quadrature, with Icosahedral Quadrature performing the most efficiently for problems tested. (authors)
Face-on reorientation of π-conjugated polymers in thin films by surface-segregated monolayers (2020)

A new π-conjugated polymer based on naphthalenediimide with a branched semifluoroalkyl side chain (FNDIT2) was synthesized and used to change the polymer orientations in thin films.
Author Correction: Cathepsin g Degrades Both Glycosylated and Unglycosylated Regions of Lubricin, a Synovial Mucin (2021)

An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Abstract 506: ANJ810 is a highly selective novel MCL1 inhibitor with optimized in vivo clearance showing robust efficacy in preclinical solid and hematological tumor models (2023)

Abstract MCL1 is an anti-apoptotic protein inhibiting cancer cell death. It is frequently amplified or overexpressed in cancer and confers resistance to relevant standard of care. Therefore, MCL1 is an attractive target to potentially re-sensitize tumors to conventional chemotherapy and targeted agents. Here we describe ANJ810 as a novel, potent, and selective MCL1 inhibitor which specifically induces apoptosis in cancer cells. ANJ810 potently and reversibly binds to the BH3-binding groove of human MCL1 (KD = 0.3 nM), thereby inhibiting the interaction with the BH3-only protein NOXA (IC50 = 0.4 nM). ANJ810 shows a 4-log-fold greater selectivity to MCL1 over other anti-apoptotic proteins like Bcl-xL or Bcl-2. In cells, ANJ810 treatment rapidly (&amp;lt; 15 min) disrupts the MCL1-BAK interaction with an IC50 &amp;lt; 10 nM, resulting in caspase-3 activation and cancer cell death. Knockout of BAK and BAX completely rescues cells from ANJ810 induced killing, indicating that initiation of cell death occurs through the intrinsic apoptotic pathway. Screening over 750 cell lines (PRISM), we found that ANJ810 induced anti-cancer activity in 222 cell lines with an IC50 &amp;lt; 1 μM across multiple solid and hematological cancers, including breast, lung, melanoma, sarcoma, lymphoma, and leukemia. The top genomic feature that correlates with sensitivity to ANJ810 treatment is the ratio of Bcl-xL/BAK expression. A key design principle of ANJ810 is its rapid systemic clearance to potentially minimize exposure-driven toxicities associated with MCL1 inhibition. ANJ810 induces efficient cancer cell killing within 4 hours in vitro but has no impact on cell viability or troponin I release in hiPSC-derived cardiomyocytes at supra-pharmacologic concentrations. In vivo, i.v. bolus injections of ANJ810 lead to short plasma residence time, yet are efficacious in xenograft models of multiple myeloma, DLBCL, NSCLC and HCC. ANJ810 will test the hypothesis in human clinical trials that short-term inhibition of MCL1 can overcome tumor resistance with an acceptable safety profile to improve current standard of care. Citation Format: Ulrike Rauh, Guo Wei, Michael Serrano-Wu, Georgios Kosmidis, Stefan Kaulfuss, Franziska Siegel, Kai Thede, James McFarland, Christopher Lemke, Nicolas Werbeck, Katrin Nowak-Reppel, Sabine Pillari, Stephan Menz, Matthias Ocker, Brian Hubbard, Virendar Kaushik, Karl Ziegelbauer, Todd Golub. ANJ810 is a highly selective novel MCL1 inhibitor with optimized in vivo clearance showing robust efficacy in preclinical solid and hematological tumor models [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023; Part 1 (Regular and Invited Abstracts); 2023 Apr 14-19; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2023;83(7_Suppl):Abstract nr 506.
Accurate Prediction of Adiabatic Ionization Potentials of Organic Molecules using Quantum Chemistry Assisted Machine Learning (2023)

In previous work (Dandu et al., <i>J</i>. <i>Phys</i>. <i>Chem</i>. <i>A</i>, <b>2022</b>, <i>126</i>, 4528-4536), we were successful in predicting accurate atomization energies of organic molecules using machine learning (ML) models, obtaining an accuracy as low as 0.1 kcal/mol compared to the G4MP2 method. In this work, we extend the use of these ML models to adiabatic ionization potentials on data sets of energies generated using quantum chemical calculations. Atomic specific corrections that were found to improve atomization energies from quantum chemical calculations have also been used in this study to improve ionization potentials. The quantum chemical calculations were performed on 3405 molecules containing eight or fewer non-hydrogen atoms derived from the QM9 data set, using the B3LYP functional with the 6-31G(2df,p) basis set for optimization. Low-fidelity IPs for these structures were obtained using two density functional methods: B3LYP/6-31+G(2df,p) and ωB97XD/6-311+G(3df,2p). Highly accurate G4MP2 calculations were performed on these optimized structures to obtain high-fidelity IPs to use in ML models based on the low-fidelity IPs. Our best performing ML methods gave IPs of organic molecules within a mean absolute deviation of 0.035 eV from the G4MP2 IPs for the whole data set. This work demonstrates that ML predictions assisted by quantum chemical calculations can be used to successfully predict IPs of organic molecules for use in high throughput screening.
Conformational Stability and Interplay of Helical N- and C-Terminal Domains with Implications on Major Ampullate Spidroin Assembly (2017)

Major ampullate spidroin (MaSp) assembly starts in the abdomen of the spider, where spidroins are stored as a liquid dope at a high concentration. The dope is squeezed into the spinning duct, and assembly is finished upon drawing of fibers. Unwanted aggregation of the spidroin solution in the gland is suppressed by prestructuring of the spidroins in micelle-like assemblies, with their hydrophobic stretches being hidden from the solvent and the hydrophilic nonrepetitive amino (NRN) and carboxy (NRC) terminal domains being exposed on the micelle surface. Conversion of the fluid dope into a solid fiber is induced within the spinning duct by acidification and ion exchange (sodium chloride against potassium phosphate), with the impact on the structure of the NRN and NRC domains acting as a regulatory switch for fiber assembly. While NRN dimerizes pH-dependently in an antiparallel fashion (i.e. quaternary structural changes), the tertiary structure of dimeric NRC is changed by shear stress and a drop in pH, inducing the alignment of the intrinsically unstructured core domains accompanied by β-sheet formation of motifs of the core domain. Here, the conformational stability of NRN1 and NRC1 of Latrodectus hesperus MaSp1 were studied using independent techniques such as circular dichroism, fluorescence and absorbance spectroscopy, and scanning electron, transmission electron, and atomic force microscopy. In this context, it could be shown that strong, non-natural acidification drives NRC1 to unfold and aggregate into β-sheet-rich structures, preventing recombinant spidroins from assembling into aligned fibrils. Interestingly, NRN1 and NRC1 apparently do not interact with each other, making spidroin assembly easy to control step-by-step and straightforward due to missing unproductive side reactions.
High Fasting Blood Glucose Level With Unknown Prior History of Diabetes Is Associated With High Risk of Severe Adverse COVID-19 Outcome (2021)

Our study shows that COVID-19 patients with current high FBG levels but unaware of pre-existing diabetes, or possibly new onset diabetes as a result of COVID-19 infection, have a higher risk of more severe adverse outcomes than those aware of prior diagnosis of diabetes and those with low current FBG levels.
X‐Ray Absorption Spectroscopy of Low Temperature Fuel Cell Catalysts (2004)

Abstract For Abstract see ChemInform Abstract in Full Text.
Dynamic and distributed adaptation of scalable multimedia content in a context-aware environment (2006)

Abstract — The seamless access to rich multimedia content on any device and over any network, usually known as Universal Multimedia Access, requires interoperable description tools and adaptation techniques to be developed. To address this, MPEG-21 introduces an adaptation framework, which provides several mechanisms for making adaptation decisions according to usage environment and adapting multimedia contents in a coding format independent way. This paper gives an overview of the European FP6 project DANAE which not only implements and extends the existing MPEG-21 adaptation mechanisms but also kicked off several new standardization activities in the area of dynamic and distributed adaptation and resource conversion. MPEG-21 DIP enables static stream selection which is a first step in a series of adaptations. The existing BSD-based adaptation mechanisms enable the efficient implementation of generic adaptation engines, which can be used for existing and future coding formats. These mechanisms were extended to enable dynamic and distributed adaptation. Alternatively to the BSD-based adaptation, resource conversion was investigated which does not rely on scalable media and allows adaptations at the scene level.
Blocked Autophagy Using Lysosomotropic Agents Sensitizes Resistant Prostate Tumor Cells to the Novel Akt Inhibitor AZD5363 (2012)

Taken together, these data show that the Akt inhibitor AZD5363 synergizes with the lysosomotropic inhibitor of autophagy chloroquine to induce apoptosis and delay tumor progression in prostate cancer models that are resistant to monotherapy AZD5363, providing a new therapeutic approach potentially translatable to patients.
A Novel Class of Cycloalkano[b]pyridines as Potent and Orally Active Opioid Receptor-like 1 Antagonists with Minimal Binding Affinity to the hERG K+Channel (2008)

A series of compounds based on 7-{[4-(2-methylphenyl)piperidin-1-yl]methyl}-6,7,8,9-tetrahydro-5 H-cyclohepta[ b]pyridine-9-ol ( (-)-8b), a potent and selective opioid receptor-like 1 (ORL1) antagonist, was prepared and evaluated using structure-activity relationship studies with the aim of removing its affinity to human ether-a-go-go related gene (hERG) K (+) channel. From these studies, 10l was identified as an optimized structure with respect to ORL1 antagonist activity, and affinity to the hERG K (+)channel. Furthermore, 10l showed good in vivo antagonism with a wide therapeutic index in regards to adverse cardiovascular effects.
Probing Buried Defects in Extreme Ultraviolet Multilayer Blanks Using Ultrasound Holography (2010)

Imaging high-resolution subsurface defects nondestructively in Mo-Si multilayer (ML) blanks used in extreme ultraviolet lithography is a challenge and no known metrology tools are available to identify such defects in a nondestructive way. The understanding of their growth mechanism during ML deposition necessitates the monitoring of these defects, which can then lead to fabricating defect-free ML blanks. Here, we report for the first time, a unique and novel application of scanning near-field ultrasound holography (SNFUH) in nondestructive imaging of high-resolution e-beam patterned lines and bumps buried under Mo/Si ML film stacks used for ultraviolet lithography. Our results indicate the successful identification of buried defects under ML blanks using SNFUH.
Dynamic Surface Stress Response during Reversible Mg Electrodeposition and Stripping (2016)

Through the use of in situ electrochemical surface stress measurements, Mg deposition and stripping processes in electrolytes for Mg batteries are studied. We examine four electrolytes: PhMgCl+AlCl3/THF, (DTBP)MgCl–MgCl2/THF, MgCl2+AlCl3/THF, and Mg(BH4)2+LiBH4/diglyme. Each of these electrolytes exhibits common surface stress response features, indicating that the mechanisms of Mg deposition and stripping are similar among the different electrolytes. Combining the measurements with density functional theory calculations, each part of the stress-potential curve is assigned to steps in the deposition and stripping reactions. The analysis suggests the following mechanism: (1) Mg2+/anion/solvent complexes adsorb on the substrate prior to the deposition; (2) Mg deposits as random nuclei and the deposition continues without a recrystallization process; (3) during the initial stage of Mg stripping, less coordinated Mg(0) is converted to soluble Mg(II) species and to partially oxidized species, MgOx; (4) as the anodic reactions proceed further, Mg continues to dissolve and MgOx is removed via chemical processes; (5) due to the strong interaction between Mg and the noble metal substrate atoms, the Mg layer directly bound to the substrate are the last to be anodically converted (and desorb).
Lattice Dynamics and Electron-Phonon Interaction in (3,3) Carbon Nanotubes (2004)

We present a detailed study of the lattice dynamics and electron-phonon coupling for a (3,3) carbon nanotube which belongs to the class of small diameter based nanotubes which have recently been claimed to be superconducting. We treat the electronic and phononic degrees of freedom completely by modern ab initio methods without involving approximations beyond the local density approximation. Using density functional perturbation theory we find a mean-field Peierls transition temperature of approximately 240 K which is an order of magnitude larger than the calculated superconducting transition temperature. Thus in (3,3) tubes the Peierls transition might compete with superconductivity. The Peierls instability is related to the special 2k(F) nesting feature of the Fermi surface. Because of the special topology of the (n,n) tubes we also find a phonon softening at the Gamma point.