gebhart/patrepeval huggingface dataset:
Design and Fabrication of Orthogonal-Mode Transducer Using 3-D Printing Technology (2018)

This letter presents the design and fabrication of an orthogonal-mode transducer (OMT) integrated with a simple circular horn antenna. Two different approaches were used to fabricate the structure using additive manufacturing technology. In the first approach, the whole structure is printed as a single piece. To have better access to the interior layers, in the second approach, the structure is divided into two symmetric pieces, and then is fabricated. The S-parameters of both the fabricated OMTs are measured and compared to the simulations results and discussed. Finally, the radiation patterns of the fabricated prototypes are presented and compared.
Experimental gene therapy of cancer using tumor cells engineered to secrete interleukin‐13 (1995)

Cytokines locally delivered to the site of a tumor boost both specific and nonspecific host anti-tumor defenses. Interleukin (IL)-13 is a recently described cytokine produced by mouse type 2 helper T lymphocytes. The aim of this study was to evaluate the inhibition of tumor growth induced by IL-13 delivered locally within or around transplanted tumor cells in mice. We observed that local administration of IL-13 at the site of transplanted tumor cells in vivo had potent inhibitory effects on growth of both immunogenic (P815 mastocytoma, H-2d) or nonimmunogenic (3LL lung carcinoma, H-2b) tumor cells. Mice injected with transfected P815 cells secreting large amounts of IL-13 rejected the P815 tumor and developed systemic specific anti-tumor immunity leading to long-lasting specific anti-tumor protection. Less efficient anti-tumoral effects were obtained with the nonimmunogenic 3LL tumor model when local administration of IL-13 was achieved by co-inoculating xenogeneic chinese hamster ovary (CHO) IL-13 cells. Several local injections of CHO IL-13 cells were needed to obtain rejection of 3LL tumors and no induction of long-lasting anti-3LL memory was obtained. Several studies were performed to elucidate the IL-13 anti-tumoral effects. Experiments with nude mice indicated that Il-13 can also stimulate nonspecific anti-tumor defenses. The histological examination of P815 IL-13 cells undergoing rejection showed monocytic cells and neutrophils infiltrating the tumor. Studies indicated that IL-13 administered in vitro did not directly stimulate the cytotoxicity of peritoneal macrophages and natural killer cells. However, experiments with Boyden chemotaxis chambers indicated that IL-13 was chemotactic for macrophages. Finally, preliminary experiments in vitro suggest that IL-13 improved antigenic presentation of P815 membranes. Thus, anti-tumor effects of IL-13 in vivo most probably result from pleiotropic effects including recruitment of nonspecific cells and improved stimulation of immune-specific anti-tumor effectors.
Secondary bile acids improve risk prediction for non‐invasive identification of mild liver fibrosis in nonalcoholic fatty liver disease (2023)

Secondary BA levels were significantly increased in NAFLD, especially in those with mild fibrosis. The combination of serum BAs and clinical/biochemical biomarkers for identifying mild fibrosis merits further assessment.
Effect of Humidity and Cyclic Loading Condition on Fatigue Behavior of Silicon Nitride (1993)

Fatigue behavior of silicon nitride ceramics under cyclic loading was evaluated by using smooth specimens. Based on the statistical method proposed by Fett and Munz, the fatigue crack growth rates (da/dN) were calculated from the fatigue lifetime distribution. The crack growth rate was accelerated by humidity of ambient air. In a dry nitrogen, the crack growth rate did not depend on the frequency, however, it was retarded by small stress amplitude. According to the fracture toughness data measured by a controlled surface flaw method, the bridging effect in smooth specimens was not significant. It is deduced that stress corrosion cracking (SCC) is one of the important mechanism in fatigue crack growth of silicon nitride ceramics. It is supposed that the cyclic loading in silicon nitride ceramics causes damage to bridging zone and/or other fatigue crack growth mechanism such as initiation and coalescence of microcracks.
Synthesis and antiviral activity of prostaglandin-J1 methyl ester (1999)

A prostaglandin-F1α methyl ester derivative (12) possessing three different protecting groups on the hydroxy units was prepared so as to allow selective removal of the group attached to the 11-OH group. Compound (12) was converted into prostaglandin-J1 methyl ester (16) in two steps (77% overall yield). Prostaglandin-J1 methyl ester showed potent activity against Sendai virus.
Minimum reaction network necessary to describe Ar/CF4 plasma etch (2018)

Predicting the etch and deposition profiles created using plasma processes is challenging due to the complexity of plasma discharges and plasma-surface interactions. Volume-averaged global models allow for efficient prediction of important processing parameters and provide a means to quickly determine the effect of a variety of process inputs on the plasma discharge. However, global models are limited based on simplifying assumptions to describe the chemical reaction network. Here a database of 128 reactions is compiled and their corresponding rate constants collected from 24 sources for an Ar/CF<sub>4</sub> plasma using the platform RODEo (Recipe Optimization for Deposition and Etching). Six different reaction sets were tested which employed anywhere from 12 to all 128 reactions to evaluate the impact of the reaction database on particle species densities and electron temperature. Because many the reactions used in our database had conflicting rate constants as reported in literature, we also present a method to deal with those uncertainties when constructing the model which includes weighting each reaction rate and filtering outliers. By analyzing the link between a reaction’s rate constant and its impact on the predicted plasma densities and electron temperatures, we determine the conditions at which a reaction is deemed necessary to the plasma model. The results of this study provide a foundation for determining which minimal set of reactions must be included in the reaction set of the plasma model.
ChemInform Abstract: Small Silicon, Big Opportunities: The Development and Future of Colloidally‐Stable Monodisperse Silicon Nanocrystals (2013)

Abstract Review: 92 refs.
Requirement of clusterin expression for prosurvival autophagy in hypoxic kidney tubular epithelial cells (2015)

Cellular autophagy is a prosurvival mechanism in the kidney against ischemia-reperfusion injury (IRI), but the molecular pathways that activate the autophagy in ischemic kidneys are not fully understood. Clusterin (CLU) is a chaperone-like protein, and its expression is associated with kidney resistance to IRI. The present study investigated the role of CLU in prosurvival autophagy in the kidney. Renal IRI was induced in mice by clamping renal pedicles at 32°C for 45 min. Hypoxia in renal tubular epithelial cell (TEC) cultures was induced by exposure to a 1% O2 atmosphere. Autophagy was determined by either light chain 3-BII expression with Western blot analysis or light chain 3-green fluorescent protein aggregation with confocal microscopy. Cell apoptosis was determined by flow cytometric analysis. The unfolded protein response was determined by PCR array. Here, we showed that autophagy was significantly activated by IRI in wild-type (WT) but not CLU-deficient kidneys. Similarly, autophagy was activated by hypoxia in human proximal TECs (HKC-8) and WT mouse primary TECs but was impaired in CLU-null TECs. Hypoxia-activated autophagy was CLU dependent and positively correlated with cell survival, and inhibition of autophagy significantly promoted cell death in both HKC-8 and mouse WT/CLU-expressing TECs but not in CLU-null TECs. Further experiments showed that CLU-dependent prosurvival autophagy was associated with activation of the unfolded protein response in hypoxic kidney cells. In conclusion, these data suggest that activation of prosurvival autophagy by hypoxia in kidney cells requires CLU expression and may be a key cytoprotective mechanism of CLU in the protection of the kidney from hypoxia/ischemia-mediated injury.
Central retinal artery occlusion following severe blow-out fracture in young adult (2009)

A 20-year-old woman was involved in a traffic accident while riding a motorcycle. The vision in her right eye was severely reduced. At the first examination, the eyelids of her right eye were severely swollen, and the eye could barely be seen. The fundus was not visible. She had no light perception in her vision. Computed tomography revealed a severe blow-out fracture in her right eye. Surgery was immediately performed to correct the fracture and the eye globe was replaced in the orbit. On the fourth postoperative day, the right fundus was visible and a cherry-red spot and milky-white edema were seen. Fluorescein angiography showed an arterial filling defect. Four months later, her visual acuity was light perception. Our case shows that a central retinal artery occlusion can be a complication of a blow-out fracture of the lower orbital wall and can lead to severe visual loss even with early surgical repair.
Supplementary 2 from A Novel Anti-CD22 Anthracycline-Based Antibody–Drug Conjugate (ADC) That Overcomes Resistance to Auristatin-Based ADCs (2023)

&lt;p&gt;Supplementary 2. In vivo efficacy of anti-CD22-vc-MMAE and anti-CD22-SPDB-DM4&lt;/p&gt;
Athermal synchronization of laser source with WDM filter in a silicon photonics platform (2017)

In an optical interconnect circuit, microring resonators (MRRs) are commonly used in wavelength division multiplexing systems. To make the MRR and laser synchronized, the resonance wavelength of the MRR needs to be thermally controlled, and the power consumption becomes significant with a high-channel count. Here, we demonstrate an athermally synchronized rare-earth-doped laser and MRR. The laser comprises a Si<sub>3</sub>N<sub>4</sub> based cavity covered with erbium-doped Al<sub>2</sub>O<sub>3</sub> to provide gain. The low thermo-optic coefficient of Al<sub>2</sub>O<sub>3</sub> and Si<sub>3</sub>N<sub>4</sub> and the comparable thermal shift of the effective index in the laser and microring cross-sections enable lasing and resonance wavelength synchronization over a wide range of temperatures. The power difference between matched and unmatched channels remains greater than 15 dB from 20 to 50 °C due to a synchronized wavelength shift of 0.02 nm/°C. The athermal synchronization approach reported here is not limited to microring filters but can be applied to any Si<sub>3</sub>N<sub>4</sub> filter with integrated lasers using rare earth ion doped Al<sub>2</sub>O<sub>3</sub> as a gain medium to achieve system-level temperature control free operation.
Mode of action of oxanosine, a novel nucleoside antibiotic. (1982)

Oxanosine, a novel nucleoside, inhibits the growth of Escherichia coli K-12 on peptone agar, but not on Nutrient agar. This antibiotic activity was found to be bacteriostatic and was antagonized by guanine, guanosine, and guanylic acid. The growth of leukemia L 1210 cell was also inhibited by oxanosine, and the inhibition was reversed by guanylic acid. Oxanosine was confirmed to be a competitive inhibitor of GMP synthetase (E.C. 6.3.5.2) and the Ki value was 7.4 X 10(-4) M.
Ultrafast Transverse Modulation of Free Electrons by Interaction with Shaped Optical Fields (2022)

Spatiotemporal electron-beam shaping is a bold frontier of electron microscopy. Over the past decade, shaping methods evolved from static phase plates to low-speed electrostatic and magnetostatic displays. Recently, a swift change of paradigm utilizing light to control free electrons has emerged. Here, we experimentally demonstrate arbitrary transverse modulation of electron beams without complicated electron-optics elements or material nanostructures, but rather using shaped light beams. On-demand spatial modulation of electron wavepackets is obtained via inelastic interaction with transversely shaped ultrafast light fields controlled by an external spatial light modulator. We illustrate this method for the cases of Hermite-Gaussian and Laguerre-Gaussian modulation and discuss their use in enhancing microscope sensitivity. Our approach dramatically widens the range of patterns that can be imprinted on the electron profile and greatly facilitates tailored electron-beam shaping.
Correlation of SARS-CoV-2 Nucleocapsid Antigen and RNA Concentrations in Nasopharyngeal Samples from Children and Adults Using an Ultrasensitive and Quantitative Antigen Assay (2021)

Diagnosis of COVID-19 by PCR offers high sensitivity, but the utility of detecting samples with high cycle threshold (<i>C<sub>T</sub></i> ) values remains controversial. Currently available rapid diagnostic tests (RDTs) for SARS-CoV-2 nucleocapsid antigens (Ag) have sensitivity well below PCR. The correlation of Ag and RNA quantities in clinical nasopharyngeal (NP) samples is unknown. An ultrasensitive, quantitative electrochemiluminescence immunoassay for SARS-CoV-2 nucleocapsid (the MSD S-PLEX SARS-CoV-2 N assay) was used to measure Ag in clinical NP samples from adults and children previously tested by PCR. The S-PLEX Ag assay had a limit of detection (LOD) of 0.16 pg/ml and a cutoff of 0.32 pg/ml. Ag concentrations measured in clinical NP samples (collected in 3.0 ml of media) ranged from less than 160 fg/ml to 2.7 μg/ml. Log-transformed Ag concentrations correlated tightly with <i>C<sub>T</sub></i> values. In 35 adult and 101 pediatric PCR-positive samples, the sensitivities were 91% (95% confidence interval, 77 to 98%) and 79% (70 to 87%), respectively. In samples with a <i>C<sub>T</sub></i> of ≤35, the sensitivities were 100% (88 to 100%) and 96% (88 to 99%), respectively. In 50 adult and 40 pediatric PCR-negative specimens, the specificities were 100% (93 to 100%) and 98% (87 to 100%), respectively. Nucleocapsid concentrations in clinical NP samples span 8 orders of magnitude and correlate closely with RNA concentrations (<i>C<sub>T</sub></i> values). The S-PLEX Ag assay showed 96 to 100% sensitivity in samples from children and adults with <i>C<sub>T</sub></i> values of ≤35, and a specificity of 98 to 100%. These results clarify Ag concentration distributions in clinical samples, providing insight into the performance of Ag RDTs and offering a new approach to diagnosis of COVID-19.
Mortality and Life Expectancy Associated with Diabetes (2008)

This chapter contains sections titled: Introduction Methodological Issues Associated with Mortality Data Mortality Trends of Type 1 Diabetes Mortality Trends of Type 2 Diabetes Type 1 Diabetes and Mortality Type 2 Diabetes and Mortality Conclusions References
A photographic scale for the assessment of human facial wrinkles (2000)

We report the utility of photographic scales to assess the degree of human facial wrinkles. A five-grade photo scale of wrinkles at eye corners was developed using photos obtained from 411 female participants aged 17 to 83 years. Based on this photo scale, scorings (five grades and nine grades) of all photos were performed by two specialists, and a standard photo for each wrinkle grade was obtained. In addition, in order to evaluate the influence of inter-observer differences in grading criteria, another scoring was performed by five general observers. The agreement between the grade standard and the score given by the general observers was evaluated by calculating the chance-corrected coefficient, i.e., the kappa value. The degree of agreement for the five-grade scale was more consistent than that for the nine-grade scale system, in which the kappa values were 0.499 and 0.396, respectively. When scoring was performed using the five-grade photo scale for the eye corners after 15 participants used a wrinkle-improving agent, a significant reduction of the wrinkle scores was confirmed. Taken together, the present findings indicate that the five-grade wrinkle photo scale is valid and useful to assess the degree of facial wrinkles.
Validation of Quality Attributes for Evaluation of Color Prints (2010)

Image quality assessment is a difficult and complex task. Quality attributes have been used in the evaluation of perceived image quality in an attempt to reduce the complexity and the dimensionality. Recently, Pedersen et al. (CIC, 2009) proposed a set of quality attributes for the evaluation of color prints. In this paper we perform an experimental validation of these quality attributes to ensure that the criteria on which they were selected are fulfilled. The results show a correspondence between the quality attributes and the criteria. The quality attributes are therefore considered as a good starting point to describe overall image quality.
Magnetic Resonance Spectroscopy Diagnosis of Neurological Diseases (1999)

Demonstrates how MRS offers a useful tool for the noninvasive biochemical analysis of the brain. The book covers over 70 clinical cases and more than 100 spectra that enhance skills at interpreting MRS, including minimizing errors, highlighting artifacts, and expanding the clinical usefulness of this diagnostic modality.
Characterization of Hybrid CNT Polymer Matrix Composites (2015)

Carbon nanotubes (CNTs) have been studied extensively since their discovery and demonstrated at the nanoscale superior mechanical, electrical and thermal properties in comparison to micro and macro scale properties of conventional engineering materials. This combination of properties suggests their potential to enhance multi-functionality of composites in regions of primary structures on aerospace vehicles where lightweight materials with improved thermal and electrical conductivity are desirable. In this study, hybrid multifunctional polymer matrix composites were fabricated by interleaving layers of CNT sheets into Hexcel® IM7/8552 prepreg, a well-characterized toughened epoxy carbon fiber reinforced polymer (CFRP) composite. The resin content of these interleaved CNT sheets, as well as ply stacking location were varied to determine the effects on the electrical, thermal, and mechanical performance of the composites. The direct-current electrical conductivity of the hybrid CNT composites was characterized by in-line and Montgomery four-probe methods. For [0](sub 20) laminates containing a single layer of CNT sheet between each ply of IM7/8552, in-plane electrical conductivity of the hybrid laminate increased significantly, while in-plane thermal conductivity increased only slightly in comparison to the control IM7/8552 laminates. Photo-microscopy and short beam shear (SBS) strength tests were used to characterize the consolidation quality of the fabricated laminates. Hybrid panels fabricated without any pretreatment of the CNT sheets resulted in a SBS strength reduction of 70 percent. Aligning the tubes and pre-infusing the CNT sheets with resin significantly improved the SBS strength of the hybrid composite To determine the cause of this performance reduction, Mode I and Mode II fracture toughness of the CNT sheet to CFRP interface was characterized by double cantilever beam (DCB) and end notch flexure (ENF) testing, respectively. Results are compared to the control IM7/8552 laminate.
Overexpression of the clpP 5′-Untranslated Region in a Chimeric Context Causes a Mutant Phenotype, Suggesting Competition for a clpP-Specific RNA Maturation Factor in Tobacco Chloroplasts (2002)

The plastid ribosomal RNA (rrn) operon promoter was fused with DNA segments encoding the leader sequence (5'-untranslated region [UTR]) of plastid mRNAs to compare their efficiency in mediating translation of a bacterial protein neomycin phosphotransferase (NPTII) in tobacco (Nicotiana tabacum) chloroplasts. In young leaves, NPTII accumulated at 0.26% and 0.8% of the total soluble leaf protein from genes with the clpP and atpB 5'-UTR, respectively. Interestingly, expression of NPTII from the promoter with the clpP 5'-UTR (0.26% NPTII) caused a mutant (chlorotic) phenotype, whereas plants accumulating approximately 0.8% NPTII from the atpB 5'-UTR were normal green, indicating that the mutant phenotype was independent of NPTII accumulation. Low levels of monocistronic clpP mRNA and accumulation of intron-containing clpP transcripts in the chlorotic leaves suggest competition between the clpP 5'-UTR in the chimeric transcript and the native clpP pre-mRNA (ratio 16:1) for an mRNA maturation factor. Because maturation of 11 other intron-containing mRNAs was unaffected in the chlorotic leaves, it appears that the factor is clpP specific. The mutant phenotype is correlated with reduced levels (approximately 2 times) of the ClpP1 protease subunit, supporting an important role for ClpP1 in chloroplast development.
Temperature Dependence of Structural and Transport Properties for Na3V2(PO4)2F3 and Na3V2(PO4)2F2.5O0.5 (2017)

Among polyanionic-based electrode materials developed for Na-ion batteries, one of the most promising families turns out to be Na3V2(PO4)2F3–yOy (0 ≤ y ≤ 2). Here, we present the influence of the oxygen substitution for fluorine on the structural and transport properties of Na3V2(PO4)2F3–yOy, as a function of temperature, through the comparison of the two compositions y = 0 and y = 0.5. An order–disorder phase transition is observed, whatever the content in oxygen, in relation with changes in the ionic conductivity and thus with the mobility of the Na+ ions within the tunnels of the tridimensional structure. The richer the content in oxygen in Na3V2(PO4)2F3–yOy, the higher is the electronic conductivity, in relation with the mixed valence state V3+/V4+ within the bioctahedral units V2O8F3–yOy, and the better are the electrochemical performances in Na-ion batteries.
CT arthrography of the human knee to measure cartilage quality with low radiation exposure (2011)

Poster: ECR 2012 / C-0116 / CT arthrography of the human knee to measure cartilage quality with low radiation exposure by: van Tiel, M. Siebelt, M. van Straten, E. Waarsing, J. Verhaar, G. P. Krestin, H. Weinans, E. Oei; Rotterdam/NL
PolyDL: Polyhedral Optimizations for Creation of High Performance DL primitives (2020)

Deep Neural Networks (DNNs) have revolutionized many aspects of our lives. The use of DNNs is becoming ubiquitous including in softwares for image recognition, speech recognition, speech synthesis, language translation, to name a few. he training of DNN architectures however is computationally expensive. Once the model is created, its use in the intended application - the inference task, is computationally heavy too and the inference needs to be fast for real time use. For obtaining high performance today, the code of Deep Learning (DL) primitives optimized for specific architectures by expert programmers exposed via libraries is the norm. However, given the constant emergence of new DNN architectures, creating hand optimized code is expensive, slow and is not scalable. To address this performance-productivity challenge, in this paper we present compiler algorithms to automatically generate high performance implementations of DL primitives that closely match the performance of hand optimized libraries. We develop novel data reuse analysis algorithms using the polyhedral model to derive efficient execution schedules automatically. In addition, because most DL primitives use some variant of matrix multiplication at their core, we develop a flexible framework where it is possible to plug in library implementations of the same in lieu of a subset of the loops. We show that such a hybrid compiler plus a minimal library-use approach results in state-of-the-art performance. We develop compiler algorithms to also perform operator fusions that reduce data movement through the memory hierarchy of the computer system.