gebhart/patrepeval huggingface dataset:
Advanced Data Acquisition Systems (2003)

Current and future requirements of the aerospace sensors and transducers field make it necessary for the design and development of new data acquisition devices and instrumentation systems. New designs are sought to incorporate self-health, self-calibrating, self-repair capabilities, allowing greater measurement reliability and extended calibration cycles. With the addition of power management schemes, state-of-the-art data acquisition systems allow data to be processed and presented to the users with increased efficiency and accuracy. The design architecture presented in this paper displays an innovative approach to data acquisition systems. The design incorporates: electronic health self-check, device/system self-calibration, electronics and function self-repair, failure detection and prediction, and power management (reduced power consumption). These requirements are driven by the aerospace industry need to reduce operations and maintenance costs, to accelerate processing time and to provide reliable hardware with minimum costs. The project's design architecture incorporates some commercially available components identified during the market research investigation like: Field Programmable Gate Arrays (FPGA) Programmable Analog Integrated Circuits (PAC IC) and Field Programmable Analog Arrays (FPAA); Digital Signal Processing (DSP) electronic/system control and investigation of specific characteristics found in technologies like: Electronic Component Mean Time Between Failure (MTBF); and Radiation Hardened Component Availability. There are three main sections discussed in the design architecture presented in this document. They are the following: (a) Analog Signal Module Section, (b) Digital Signal/Control Module Section and (c) Power Management Module Section. These sections are discussed in detail in the following pages. This approach to data acquisition systems has resulted in the assignment of patent rights to Kennedy Space Center under U.S. patent # 6,462,684. Furthermore, NASA KSC commercialization office has issued licensing rights to Circuit Avenue Netrepreneurs, LLC , a minority-owned business founded in 1999 located in Camden, NJ.
Structure−Property Relationships in Third-Order Nonlinear Optical Chromophores (1998)

Scientists have sought for over two decades to incorporate the necessary attributes of transparency, stability, and high nonlinear susceptibilities into optimized organic or organometallic chromophores for third-order nonlinear optical (NLO) applications. These investigations have provided an ever-expanding understanding of structure−function relationships for the second hyperpolarizability γ and the bulk third-order nonlinear optical susceptibility χ(3) in organic materials, which are reviewed herein. Contributing to this understanding are the studies of the third-order NLO properties displayed by an array of structurally related organic chromophores based on the conjugated carbon skeletons of hex-3-ene-1,5-diynes (1,2-diethynylethenes, DEEs) and 3,4-diethynylhex-3-ene-1,5-diynes (tetraethynylethenes, TEEs). A comprehensive series of donor (D) and/or acceptor (A) substituted derivatives of DEEs and TEEs has been measured by third-harmonic generation (THG) experiments, and the investigations on these one- and two-dimensionally conjugated chromophores have provided fundamental insight into routes leading to enhanced optical nonlinearities. The molecular characteristics identified to impact the second hyperpolarizability γ include conjugation length, heteroaromatic conjugation, degree of D/A substitution, cis, trans, and geminal D/A conjugation, and molecular asymmetry. A comparison of NLO properties for small molecular systems to those of a number of larger oligomers based on the DEE and TEE framework is also presented.
Jewish Nobles and Geniuses in Modern Hungary. By William O. McCagg, Jr. East European Monographs, no. 3. Boulder, Colo.: East European Quarterly, 1972. Distributed by Columbia University Press, New York. 254 pp. $9.00. (1974)

Jewish Nobles and Geniuses in Modern Hungary. By William O. McCagg, Jr. East European Monographs, no. 3. Boulder, Colo.: East European Quarterly, 1972. Distributed by Columbia University Press, New York. 254 pp. $9.00. - Volume 33 Issue 3
Discovery of 1-Amino-5H-pyrido[4,3-b]indol-4-carboxamide Inhibitors of Janus Kinase 2 (JAK2) for the Treatment of Myeloproliferative Disorders (2011)

The JAK-STAT pathway mediates signaling by cytokines, which control survival, proliferation, and differentiation of a variety of cells. In recent years, a single point mutation (V617F) in the tyrosine kinase JAK2 was found to be present with a high incidence in myeloproliferative disorders (MPDs). This mutation led to hyperactivation of JAK2, cytokine-independent signaling, and subsequent activation of downstream signaling networks. The genetic, biological, and physiological evidence suggests that JAK2 inhibitors could be effective in treating MPDs. De novo design efforts of new scaffolds identified 1-amino-5H-pyrido[4,3-b]indol-4-carboxamides as a new viable lead series. Subsequent optimization of cell potency, metabolic stability, and off-target activities of the leads led to the discovery of 7-(2-aminopyrimidin-5-yl)-1-{[(1R)-1-cyclopropyl-2,2,2-trifluoroethyl]amino}-5H-pyrido[4,3-b]indole-4-carboxamide (65). Compound 65 is a potent, orally active inhibitor of JAK2 with excellent selectivity, PK profile, and in vivo efficacy in animal models.
Current State of Human Embryonic Stem Cell Research: An Overview of Cell Lines and Their Use in Experimental Work (2006)

Research in human embryonic stem cells (hESCs) is a rapidly developing scientific field. In this study we collect and evaluate a thorough body of data on the current number of publicly disclosed hESC lines and the extent and impact of scientific work involving the use of these cells. These data contribute to the substantiation of the discussion on the current status of hESC research, provide a basis for the analysis of the status of such research, and uncover further needs in terms of registration, banking, standardization, and tracing.
Menstrual Cycle Variation in MRI-Based Quantification of Intraluminal Gas in Women With and Without Dysmenorrhea (2022)

Women frequently report increased bloating, flatulence, and pain during the perimenstrual period. However, it is unknown whether women have more intraluminal gas during menses. To evaluate whether pain-free women or women with dysmenorrhea have different amounts of intraluminal bowel gas during the menses, we utilized magnetic resonance imaging (MRI) to determine colonic gas volumes throughout the menstrual cycle. To avoid dietary influence, the participants were instructed to avoid gas-producing foods before their scheduled MRI. We verified the measurement repeatability across the reviewers and obtained an intraclass correlation coefficient of 0.92. There were no significant differences in intraluminal gas volume between menses and non-menses scans (<i>p</i> = 0.679). Even among the women with dysmenorrhea, there was no significant difference in the intraluminal gas volume between menses and non-menses (<i>p</i> = 0.753). During menstruation, the participants with dysmenorrhea had less intraluminal gas than participants without dysmenorrhea (<i>p</i> = 0.044). However, the correlation between the bowel gas volume and the pain symptoms were not significant (<i>p</i> > 0.05). Although increased bowel symptoms and bloating are reported in the women with dysmenorrhea during menses, our results do not support the hypothesis that increased intraluminal gas is a contributing factor. Although dietary treatment has been shown in other studies to improve menstrual pain, the mechanism responsible for abdominal symptoms requires further investigation. Our findings demonstrate that the intraluminal bowel gas volume measurements are feasible and are unaffected by menses under a controlled diet. The method described might prove helpful in future mechanistic studies in clarifying the role of intraluminal bowel gas in other conditions.
The Influence of Lithium Perchlorate on Discotic Liquid Crystals and the Ion Conduction of their Mixtures (1999)

Abstract A C3-symmetric trimesic amide derivative with peripheral oligo(ethylene oxide) side chains (compound 1) shows discotic mesomorphism in a broad temperature range due to stacking of the extended core (Tg ∼ -50[ddot]C; Tcl ∼ 240[ddot]C). Mixtures of 1 and lithium perchlorate (LiClO4) also exhibit liquid crystalline (LC) properties as shown by polarization microscopy, DSC and X-ray diffraction studies. An increase of the Tg as well as a decrease of the clearing temperature are observed with increasing salt concentration. The ion conducting properties of the LiClO4-mixtures of 1 have been measured by complex impedance spectroscopy; promising levels of conductivity, up to 10−6 S/cm at room temperature, have been recorded.
Effect of cryopreservation on a rare McLeod donor red blood cell concentrate (2021)

Units of red blood cell (RBC) concentrates with rare phenotypes are typically not included in method validation studies for cryopreservation processes; rather, they are reserved for patients with rare blood needs. Some rare RBC phenotypes may demonstrate membrane abnormalities, like acanthocytosis as observed for RBCs with the McLeod phenotype, and are specifically banked for these rare attributes; however, the impact that rare RBC phenotypes have on post-thaw quality has not been well studied. To evaluate how a rare RBC phenotype is affected by the cryopreservation process, 4 RBC units, cryopreserved in 1993 using manual methods, were selected for evaluation. These RBCs included one with the McLeod phenotype and three with phenotypes not known to cause significant membrane changes. Post-thaw, an altered deglycerolization protocol, implemented to reduce supernatant glycerol after cryopreservation, was used before processing RBCs on an automated closed system (ACP 215; Haemonetics, Boston, MA) to accommodate the use of a closed system cell processor not available when the RBC units were previously cryopreserved. RBC quality was tested at 24 hours, 7 days, and 14 days post-deglycerolization. Before deglycerolization, an extracted sample from the thawed glycerolized RBC unit was used to obtain genetic material for phenotype confirmation. Genotyping confirmed the McLeod phenotype. When comparing McLeod with non-McLeod units, RBCs from the McLeod donor exhibited acanthocytosis, higher rigidity, and lower morphology scores than RBCs from the non-McLeod units post-deglycerolization. Hemolysis, however, was comparable across all 4 units, meeting regulatory standards. Therefore, McLeod RBCs can withstand cryopreservation, suggesting that units from these donors, glycerolized using older methods, can be deglycerolized using the ACP 215 and stored hypothermically for 14 days. It was also determined that genotyping can be performed on non-leukocyte–reduced cryopreserved RBCs, allowing for confirmation of genetic profiles of donor units banked before the implementation of molecular methods.
Global parametric convergence of finite dimensional blind adaptation algorithms of constant modulus type (1994)

Global parametric convergence of finite dimensional blind adaptation algorithms of constant modulus type
Déphaseur en technologie MEMS pour application en bande millimétrique (2015)

National audience
The Basic Biology of Redoxosomes in Cytokine-Mediated Signal Transduction and Implications for Disease-Specific Therapies (2014)

Redox reactions have been established as major biological players in many cellular signaling pathways. Here we review mechanisms of redox signaling with an emphasis on redox-active signaling endosomes. Signals are transduced by relatively few reactive oxygen species (ROS), through very specific redox modifications of numerous proteins and enzymes. Although ROS signals are typically associated with cellular injury, these signaling pathways are also critical for maintaining cellular health at homeostasis. An important component of ROS signaling pertains to localization and tightly regulated signal transduction events within discrete microenvironments of the cell. One major aspect of this specificity is ROS compartmentalization within membrane-enclosed organelles such as redoxosomes (redox-active endosomes) and the nuclear envelope. Among the cellular proteins that produce superoxide are the NADPH oxidases (NOXes), transmembrane proteins that are implicated in many types of redox signaling. NOXes produce superoxide on only one side of a lipid bilayer; as such, their orientation dictates the compartmentalization of ROS and the local control of signaling events limited by ROS diffusion and/or movement through channels associated with the signaling membrane. NOX-dependent ROS signaling pathways can also be self-regulating, with molecular redox sensors that limit the local production of ROS required for effective signaling. ROS regulation of the Rac-GTPase, a required co-activator of many NOXes, is an example of this type of sensor. A deeper understanding of redox signaling pathways and the mechanisms that control their specificity will provide unique therapeutic opportunities for aging, cancer, ischemia-reperfusion injury, and neurodegenerative diseases.
In vivo 1H MR spectroscopy of human head and neck lymph node metastasis and comparison with oxygen tension measurements. (2000)

1H MRS may be useful for differentiating metastatic head and neck cancer from normal muscular tissue and may allow for the possibility of assessing oxygenation. Potential clinical applications include the staging and monitoring of treatment.
Towards Information Theoretic Interpretation of Practical Ciphers (2021)

In spite of the wide spread of practical crypto- systems and ciphers nowadays, they still lack a unique metric to measure the secrecy level they provide. Their strength is measured in an ad-hoc way by exposing them to different kinds of attacks. In addition, their ability to hold secure against these attacks is evaluated in time and computations. In this paper, we introduce an approach for calculating the equivocation of the secret key used in these ciphers. In addition, we prove that it can be used as an indicator for the work required to break the cipher. This will help in unifying the metrics used in evaluating the strength of the ciphers and in comparing them with the classical information theoretic secreacy measures.
Tissue Array-Based Predictions of Pathobiology, Prognosis, and Response to Treatment for Renal Cell Carcinoma Therapy (2004)

Renal cell carcinoma is the most lethal of the common urologic malignancies, with approximately 40% of patients eventually dying of cancer progression. Approximately one third of patients present with metastatic disease, and up to 40% treated for localized disease have a recurrence. Historically, clinical factors have been used as prognostic markers for patients with renal cell carcinoma. Recent advances in the understanding of the pathogenesis, behavior, and molecular biology of renal cell carcinoma have paved the way for developments that may enhance early diagnosis, better predict tumor prognosis, and improve survival for renal cell carcinoma patients. Furthermore, reliable predictive factors are essential for the stratification of patients into clinically meaningful categories, which can be used to provide patients with counseling regarding prognosis, select treatment modalities, and determine eligibility for clinical trials. This has led to the creation of integrated staging systems that predict outcome by combining pathological and clinical variables. Although staging has been improved with the development of integrated systems, molecular tumor markers are expected to revolutionize the staging of renal cell carcinoma in the future. The development of methods based on gene and tissue arrays has created a powerful tool for evaluating hundreds to thousands of tumors simultaneously with histologic, immunohistochemical, and chromosomal analyses. Gene array analysis permits rapid molecular profiling, and tissue arrays enable the analysis of protein expression profiles on specimens to determine their potential clinical significance and role in renal cell carcinoma biology. This article reviews the tissue array-based predictors of pathobiology, prognosis, response to treatment, and potential molecular targets for therapy of renal cell carcinoma.
Angiogenesis-related non-coding RNAs and gastrointestinal cancer (2021)

Gastrointestinal (GI) cancers are among the main reasons for cancer death globally. The deadliest types of GI cancer include colon, stomach, and liver cancers. Multiple lines of evidence have shown that angiogenesis has a key role in the growth and metastasis of all GI tumors. Abnormal angiogenesis also has a critical role in many non-malignant diseases. Therefore, angiogenesis is considered to be an important target for improved cancer treatment. Despite much research, the mechanisms governing angiogenesis are not completely understood. Recently, it has been shown that angiogenesis-related non-coding RNAs (ncRNAs) could affect the development of angiogenesis in cancer cells and tumors. The broad family of ncRNAs, which include long non-coding RNAs, microRNAs, and circular RNAs, are related to the development, promotion, and metastasis of GI cancers, especially in angiogenesis. This review discusses the role of ncRNAs in mediating angiogenesis in various types of GI cancers and looks forward to the introduction of mimetics and antagonists as possible therapeutic agents.
Beyond CFP2-ACO (2015)

Get PDF Email Share Share with Facebook Tweet This Post on reddit Share with LinkedIn Add to CiteULike Add to Mendeley Add to BibSonomy Get Citation Copy Citation Text I. Betty, "Beyond CFP2-ACO," in Optical Fiber Communication Conference, OSA Technical Digest (online) (Optica Publishing Group, 2015), paper W1H.1. Export Citation BibTex Endnote (RIS) HTML Plain Text Get Video Citation alert Save article
Development of Potent RSK Inhibitors as Biological Probes (2015)

While the p90 Ribosomal S6 Kinase (RSK) family has been implicated in multiple tumor cell functions, the full understanding of this kinase family has been restricted by the lack of highly selective tool inhibitors. A bis-phenol pyrazole was identified from high-throughput screening as an inhibitor of the N-terminal kinase of RSK2. Structure-based drug design using crystallography, conformational analysis, and scaffold morphing resulted in highly optimized difluorophenol pyridines inhibitors of the RSK kinase family as demonstrated cellularly by inhibition of YB1 phosphorylation. These compounds provide for the first time in vitro tools with an improved selectivity and potency profile to examine the importance of RSK signaling in cancer cells and to fully evaluate RSK as a therapeutic target.
Abstract 2312: Using multidimensional real-time cell profiling approach to identify novel inhibitors of key targets and pathways involved in cancer maintenance and progression (2011)

Abstract A high throughput cell-based phenotypic screening method was developed using real time cell analysis system which is based on impedance sensor technology. Using compounds with known mechanisms, we had previously demonstrated small molecule compounds produce characteristic time-dependent cell response profiles (TCRP) which could be indicative of mechanism of action. The cellular-basis for the anti-mitotic TCRP has been extensively validated using both anti-mitotic compounds and siRNAs targeting mitotic machineries (e.g. Eg5, PLK1 &amp; Mad2). In this study, we used the TCRP approach to screen a 119,595 compound library for novel anti-cancer agents. The screening was performed at a final concentration of 17.8 µM using a human non small cell lung cancer line, H1993. The TCRP was monitored for 48 hours after compound treatment and the data generated was analyzed using in-house developed software to perform clustering analysis. For each screening set, a panel of compounds with known mechanisms of action were used as positive control and also served as reference for TCRP-based clustering to predict mechanisms of action. After multi-dose confirmation, 239 hits with IC50 values less than 8.9 µM were subjected to TCRP analysis. In comparison with reference TCRP patterns, we indentified 26 hits corresponding to tyrosine kinase inhibitors, 9 hits as DNA damaging agents, 125 hits as anti-mitotic agents, and 28 hits as cytostatic agents. Detailed characterization of 117 putative anti-mitotic compounds with traditional p-H3 based methods demonstrates 113 of them (96.6%) mediated mitotic arrest, thus demonstrating the robust predictive nature of the approach. We also have validated the putative tyrosine kinase inhibitors in in vitro kinase assays. TCRP-based phenotypic screening displays a novel drug screening approach with great potentials for discovering new pathway-modulating anticancer agents. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 102nd Annual Meeting of the American Association for Cancer Research; 2011 Apr 2-6; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2011;71(8 Suppl):Abstract nr 2312. doi:10.1158/1538-7445.AM2011-2312
Automatic and Controlled Processing of Melodic Contour and Interval Information Measured by Electrical Brain Activity (2002)

Most work on how pitch is encoded in the auditory cortex has focused on tonotopic (absolute) pitch maps. However, melodic information is thought to be encoded in the brain in two different "relative pitch" forms, a domain-general contour code (up/down pattern of pitch changes) and a music-specific interval code (exact pitch distances between notes). Event-related potentials were analyzed in nonmusicians from both passive and active oddball tasks where either the contour or the interval of melody-final notes was occasionally altered. The occasional deviant notes generated a right frontal positivity peaking around 350 msec and a central parietal P3b peaking around 580 msec that were present only when participants focused their attention on the auditory stimuli. Both types of melodic information were encoded automatically in the absence of absolute pitch cues, as indexed by a mismatch negativity wave recorded during the passive conditions. The results indicate that even in the absence of musical training, the brain is set up to automatically encode music-specific melodic information, even when absolute pitch information is not available.
β-lapachone suppresses the proliferation of human malignant melanoma cells by targeting specificity protein 1 (2015)

β-lapachone (β-lap), a novel natural quinone derived from the bark of the Pink trumpet tree (Tabebuia avellanedae) has been demonstrated to have anticancer activity. In this study, we investigated whether β-lap exhibits anti-proliferative effects on two human malignant melanoma (HMM) cell lines, G361 and SK-MEL-28. The effects of β-lap on the HMM cell lines were investigated using 3-(4,5-dimethylthiazol-2-yl)‑5-(3-carboxymethoxyphenyl)‑2-(4-sulfophenyl-2H-tetrazolium (MTS) assay, 4',6-diamidino-2-phenylindole (DAPI) staining, Annexin V and Dead cell assay, mitochondrial membrane potential (MMP) assay and western blot analysis. We demonstrated that β-lap significantly induced apoptosis and suppressed cell viability in the HMM cells. Intriguingly, the transcription factor specificity protein 1 (Sp1) was significantly downregulated by β-lap in a dose- and time-dependent manner. Furthermore, β-lap modulated the protein expression level of the Sp1 regulatory genes including cell cycle regulatory proteins and apoptosis-associated proteins. Taken together, our findings indicated that β-lap modulates Sp1 transactivation and induces apoptotic cell death through the regulation of cell cycle- and apoptosis-associated proteins. Thus, β-lap may be used as a promising anticancer drug for cancer prevention and may improve the clinical outcome of patients with cancer.
Un outil de segmentation pour la manipulation de séquences vidéo (2001)

Colloque avec actes et comité de lecture. nationale