gebhart/patrepeval huggingface dataset:
Environmental aging of Schottky contacts to n-AlGaN (2001)

Gold Schottky contacts to n-AlGaN were fabricated, and the influence of the semiconductor surface preparation on the electrical performance of the diodes was examined. More significantly, the electrical characteristics of the diodes were found to be sensitive to the environment in which they were exposed. Diodes stored in vacuum had stable but poor electrical characteristics, exhibiting the same high reverse leakage currents, low barrier heights, and high ideality factors as the freshly prepared diodes. On the other hand, didoes exposed to air changed over the course of days, in some cases with decreases in the reverse leakage currents by four or more orders of magnitude and increases in the barrier height by 0.3–0.5 eV. Further study of this change in electrical properties showed that the effect was reversible with exposure to N2 gas or vacuum and adequate temperature. In addition, the effect was more pronounced when the metal contact was thin, indicating that diffusion of gases through the metal was significant. This study suggests that nitride semiconductor devices with Schottky barriers to n-AlGaN as components may exhibit improved performance if they are initially stored in air for a few days prior to encapsulation and will also exhibit a pronounced sensitivity to their storage and operational environment if not adequately protected from it.
Alternative splicing of human papillomavirus type-16 E6/E6* early mRNA is coupled to EGF signaling via Erk1/2 activation (2010)

Certain types of human papillomaviruses (HPVs) are etiologically linked to cervical cancer. Their transforming capacity is encoded by a polycistronic premRNA, where alternative splicing leads to the translation of functional distinct proteins such as E6, E6*, and E7. Here we show that splicing of HPV16 E6/E7 ORF cassette is regulated by the epidermal growth factor (EGF) pathway. The presence of EGF was coupled to preferential E6 expression, whereas depletion of EGF, or treatment with EGF receptor (EGFR) neutralizing antibodies or the EGFR inhibitor tyrphostin AG1478, resulted in E6 exon exclusion in favor of E6*. As a consequence, increased p53 levels and enhanced translation of E7 with a subsequent reduction of the retinoblastoma protein pRb could be discerned. E6 exon exclusion upon EGF depletion was independent from promoter usage, mRNA stability, or selective mRNA transport. Time-course experiments and incubation with cycloheximide demonstrated that E6 alternative splicing is a direct and reversible effect of EGF signal transduction, not depending on de novo protein synthesis. Within this process, Erk1/2-kinase activation was the critical event for E6 exon inclusion, mediated by the upstream MAP kinase MEK1/2. Moreover, siRNA knockdown experiments revealed an involvement of splicing factors hnRNPA1 and hnRNPA2 in E6 exon exclusion, whereas the splicing factors Brm and Sam68 were found to promote E6 exon inclusion. Because there is a natural gradient of EGF and EGF receptor expression in the stratified epithelium, it is reasonable to assume that EGF modulates E6/E7 splicing during the viral life cycle and transformation.
Progressive Loss of Dopaminergic Neurons in the Ventral Midbrain of Adult Mice Heterozygote forEngrailed1 (2007)

Engrailed1 and Engrailed2 (En1 and En2) are two developmental genes of the homeogene family expressed in the developing midbrain. En1 and, to a lesser degree, En2 also are expressed in the adult substantia nigra (SN) and ventral tegmental area (VTA), two dopaminergic (DA) nuclei of the ventral midbrain. In an effort to study En1/2 adult functions, we have analyzed the phenotype of mice lacking one En1 allele in an En2 wild-type context. We show that in this mutant the number of DA neurons decreases slowly between 8 and 24 weeks after birth to reach a stable 38 and 23% reduction in the SN and VTA, respectively, and that neuronal loss can be antagonized by En2 recombinant protein infusions in the midbrain. These loss and gain of function experiments firmly establish that En1/2 is a true survival factor for DA neurons in vivo. Neuronal death in the mutant is paralleled by a 37% decrease in striatal DA, with no change in serotonin content. Using established protocols, we show that, compared with their wild-type littermates, En1+/- mice have impaired motor skills, an anhedonic-like behavior, and an enhanced resignation phenotype; they perform poorly in social interactions. However, these mice do not differ from their wild-type littermates in anxiety-measuring tests. Together, these results demonstrate that En1/2 genes have important adult physiological functions. They also suggest that mice lacking only one En1 allele could provide a novel model for the study of diseases associated with progressive DA cell death.
Interaction of pulsed CO and CO (2000)

Experiments on laser-rock-fluid interaction have been carried out by using pulsed CO and CO<SUB>2</SUB> lasers which irradiated rocks typical for oil field: sandstone, limestone, shale and granite. Energy fluence and laser intensity on rock surface were up to 1.0 kJ/cm<SUP>2</SUP> and 10<SUP>7</SUP>W/cm<SUP>2</SUP>, respectively. The dependencies of specific energy consumption (i.e. energy per volume needed for rock excavation) on energy fluence, the number of pulses, saturated fluid, rock material and irradiation conditions have been obtained for various rock samples. The dependencies of momentum transferred to the rock on energy fluence for dry rocks and rocks with surface saturated by water or mineral oil have been measured. High-speed photography procedure has been used for analyzing laser plasma plume formation on a rock surface. Infrared spectra of reflectivity and absorption of rocks before and after irradiation have been measured.
Fibroblast-Secreted Macrophage Colony-Stimulating Factor Is Responsible for Generation of Biphenotypic B/Macrophage Cells from a Subset of Mouse B Lymphocytes (1999)

Normal and malignant CD5+ B lymphocytes can develop macrophage-like characteristics. One stimulus of this phenotypic shift is culture of normal mouse splenic B lymphocytes with splenic fibroblasts or their conditioned media. These biphenotypic B/macrophage (B/M phi) cells simultaneously display macrophage characteristics, such as phagocytosis and F4/80 expression, while retaining B cell features, including expression of surface Ig, CD5, B220, and rearranged Ig genes. The present study investigated the fibroblast-secreted factor that promotes this phenotypic change from B cell to B/M phi cell. RT-PCR analysis demonstrated that mRNA for M-CSF is produced by splenic fibroblasts. Recombinant M-CSF (CSF-1) could replace fibroblast-conditioned medium to elicit the development and survival of B/M phi cells from splenic B lymphocytes. In addition, neutralization of fibroblast-secreted M-CSF with specific mAbs abrogated the ability of conditioned supernatants to promote outgrowth of B/M phi cells. The transition from B lymphocyte to B/M phi cell was marked by the kinetic appearance of mRNA for the M-CSF receptor, c-fms, at day 3 following culture initiation. These results demonstrate that M-CSF is important in the development and physiology of mouse B/M phi cells and potentially in the growth of human biphenotypic hematological malignancies. Interestingly, the presence of IFN-gamma in splenic B lymphocyte cultures abrogated the effect of fibroblast-conditioned medium or M-CSF on outgrowth of B/M phi cells. Furthermore, these findings suggest that a Th1 microenvironment favored by typical macrophages is detrimental to the outgrowth of B/M phi cells.
Powerline-PNC: Boosting throughput of powerline networks with physical-layer network coding (2015)

This paper presents Powerline Physical-layer Network Coding (Powerline-PNC), a powerline communication architecture that employs physical-layer network coding (PNC). As the first work that applies PNC in powerline communication, we show that Powerline-PNC improves the throughput of bidirectional information interchange in the powerline network by 100% at the SNR cost of 3dB. Specifically, we design both the PHY layer and MAC layer for Powerline-PNC to support PNC within the existing powerline communication standards. Extensive simulations show that the proposed Powerline-PNC works well in practical powerline channels.
Analysis of biomedical industrial development strategy in Shiyan area based on SWOT (2010)

Relying on unique wild Chinese crude drug, animal and plant resources of Wudang Mountain and Shennongjia, biological pharmacy technology and talent advantages, Shiyan area has a definite competitive advantage in the development of biomedicine industry. This paper analyzed the current situation of biomedical industry and put forward corresponding strategies in Shiyan area based on SWOT.

Key words: 
Shiyan; Biological medince; SWOT analysis
Field work and dispersion relations of excitations on fractals (1991)

An approach to finding the dispersion law of excitations on fractals for an arbitrary interaction is developed. It is based on the scale invariance of the probe-field work and allows one to express exponents of the dispersion law in terms of the spectral and Hausdorff dimensions. The expressions obtained for the dispersion-law exponent are different for vibrational (Goldstone-type) and dipolar (non-Goldstone-type) excitations, in agreement with previous results of Alexander and Orbach and those of the authors of the present paper.
Toward Stable Genetic Engineering of Human O-Glycosylation in Plants (2012)

Glycosylation is the most abundant and complex posttranslational modification to be considered for recombinant production of therapeutic proteins. Mucin-type (N-acetylgalactosamine [GalNAc]-type) O-glycosylation is found in eumetazoan cells but absent in plants and yeast, making these cell types an obvious choice for de novo engineering of this O-glycosylation pathway. We previously showed that transient implementation of O-glycosylation capacity in plants requires introduction of the synthesis of the donor substrate UDP-GalNAc and one or more polypeptide GalNAc-transferases for incorporating GalNAc residues into proteins. Here, we have stably engineered O-glycosylation capacity in two plant cell systems, soil-grown Arabidopsis (Arabidopsis thaliana) and tobacco (Nicotiana tabacum) Bright Yellow-2 suspension culture cells. Efficient GalNAc O-glycosylation of two stably coexpressed substrate O-glycoproteins was obtained, but a high degree of proline hydroxylation and hydroxyproline-linked arabinosides, on a mucin (MUC1)-derived substrate, was also observed. Addition of the prolyl 4-hydroxylase inhibitor 2,2-dipyridyl, however, effectively suppressed proline hydroxylation and arabinosylation of MUC1 in Bright Yellow-2 cells. In summary, stably engineered mammalian type O-glycosylation was established in transgenic plants, demonstrating that plants may serve as host cells for the production of recombinant O-glycoproteins. However, the present stable implementation further strengthens the notion that elimination of endogenous posttranslational modifications may be needed for the production of protein therapeutics.
Distinctive features of single nucleotide alterations in induced pluripotent stem cells with different types of DNA repair deficiency disorders (2016)

Disease-specific induced pluripotent stem cells (iPSCs) have been used as a model to analyze pathogenesis of disease. In this study, we generated iPSCs derived from a fibroblastic cell line of xeroderma pigmentosum (XP) group A (XPA-iPSCs), a rare autosomal recessive hereditary disease in which patients develop skin cancer in the areas of skin exposed to sunlight. XPA-iPSCs exhibited hypersensitivity to ultraviolet exposure and accumulation of single-nucleotide substitutions when compared with ataxia telangiectasia-derived iPSCs that were established in a previous study. However, XPA-iPSCs did not show any chromosomal instability in vitro, i.e. intact chromosomes were maintained. The results were mutually compensating for examining two major sources of mutations, nucleotide excision repair deficiency and double-strand break repair deficiency. Like XP patients, XPA-iPSCs accumulated single-nucleotide substitutions that are associated with malignant melanoma, a manifestation of XP. These results indicate that XPA-iPSCs may serve a monitoring tool (analogous to the Ames test but using mammalian cells) to measure single-nucleotide alterations, and may be a good model to clarify pathogenesis of XP. In addition, XPA-iPSCs may allow us to facilitate development of drugs that delay genetic alteration and decrease hypersensitivity to ultraviolet for therapeutic applications.
The Clinical Significance of Pretransplant C1q Assay Status in Positive Crossmatch Kidney Transplantation (2018)

Background Patients with a pretransplant donor-specific antibodies (DSA) are at higher risk for antibody-mediated rejection (AMR). However, not all DSA have the same pathogenetic potential. The novel assay for complement binding capacity may help to stratify the risk for AMR. The aim of this study was to investigate the association between complement binding ability of DSA and clinical outcomes in patients with a positive crossmatch (XM). Methods We analyzed 59 patients with a positive XM who underwent living donor kidney transplantation between 2011 and 2016 with desensitization therapy (12 complement-dependent cytotoxic [CDC] XM and 47 flow cytometric XM). We analyzed clinical outcomes according to XM and C1q status.Results Biopsy-proven AMR developed in 18 patients (30.5%). CDC XM patients suffered more AMR than flow cytometric XM patients (P=0.004). Although the incidence of AMR was higher in C1q-positive DSA than in C1q-negative DSA, the difference was not statistically significant (P=0.067). The XM techniques and C1q positivity did no correlated with graft loss. C1q positivity was associated with higher IgG titer (11181 ± 3997 vs. 4823 ± 6132, P=0.002).Conclusion C1q-positive DSA in patients with positive crossmatch was unable to predict AMR, but CDC XM compared to flow cytometric XM did. The C1q binding activity in patients with positive XM largely reflects differences in antibody strength.
Modeling of wetting phenomena in cathode catalyst layers for PEM fuel cells (2022)

Optimal water management in polymer electrolyte fuel cells hinges on understanding wetting phenomena inside the porous network of the cathode catalyst layer. Macrohomogeneous models have evolved to take into account water-related phenomena. However, existing modeling approaches implement a phenomenological description that employs a mixed wettability, thus neglecting vital structural features that constitute the wetting behavior. Other approaches exploit experimentally measured water retention curves to derive descriptors for the wetting properties of the catalyst material. Albeit, such measurements are scarce in the literature, elaborate and expensive, making a materials screening focused on wettability unfeasible. Our approach extends these efforts by providing a structure-based model that predicts water retention curves from catalyst layer ink parameters. The model accounts for structural formation at the ink stage and it captures the statistical distribution of wetting properties. Design trends derived on the basis of this model are in agreement with experimental findings in the literature. Furthermore, the model is analyzed for its implications on fuel cell degradation. Finally, we discuss its capabilities with regard to model-supported fuel cell design and optimization.
Topological isolation of developmental regulators in mammalian genomes (2021)

Precise control of mammalian gene expression is facilitated through epigenetic mechanisms and nuclear organization. In particular, insulated chromosome structures are important for regulatory control, but the phenotypic consequences of their boundary disruption on developmental processes are complex and remain insufficiently understood. Here, we generated deeply sequenced Hi-C data for human pluripotent stem cells (hPSCs) that allowed us to identify CTCF loop domains that have highly conserved boundary CTCF sites and show a notable enrichment of individual developmental regulators. Importantly, perturbation of such a boundary in hPSCs interfered with proper differentiation through deregulated distal enhancer-promoter activity. Finally, we found that germline variations affecting such boundaries are subject to purifying selection and are underrepresented in the human population. Taken together, our findings highlight the importance of developmental gene isolation through chromosomal folding structures as a mechanism to ensure their proper expression.
A Design Model for Random Process Variability (2008)

A new approach to analyze process variation through measured current variation is introduced. The methodology concludes with a simple and convenient posynomial model for random process variability to bridge the gap between existing statistical methods and circuit design. The model contains only design variables: transistor sizes W and L, and operating points V <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">gs</sub> and V <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">ds</sub> . Modeling random process variability in this way allows for adaptability to optimization problems, time efficient methods for gathering statistical information in comparison to Monte Carlo, and an alternative equation for hand analysis.
Adaptive changes in pancreatic beta cell fractional area and beta cell turnover in human pregnancy (2010)

The adaptive increase in beta cell numbers in human pregnancy is not as great as in most reports in rodents. This increase in humans is achieved by increased numbers of beta cells in apparently new small islets, rather than duplication of beta cells in existing islets, which is characteristic of pregnancy in rodents.
ChemInform Abstract: Liquid‐Crystalline Abrikosov Flux Phase with an Antiferroelectric Structure. (2000)

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
Selective targeting of IL2Rβγ combined with radiotherapy triggers CD8- and NK-mediated immunity, abrogating metastasis in HNSCC (2023)

The implementation of cancer immunotherapies has seen limited clinical success in head and neck squamous cell carcinoma (HNSCC). Interleukin-2 (IL-2), which modulates the survival and functionality of lymphocytes, is an attractive target for new immunotherapies but one that is limited by presence of regulatory T cells (Tregs) expressing the high-affinity IL-2Rα. The bispecific immunocytokine PD1-IL2v preferentially delivers IL-2 signaling through IL-2Rβγ on PD-1-expressing cells. Selectively targeting the intermediate-affinity IL-2Rβγ can be leveraged to induce anti-tumor immune responses in effector T cells and natural killer (NK) cells while limiting the negative regulation of IL-2Rα activation on Tregs. Using radiation therapy (RT) in combination with PD1-IL2v improves local tumor control and survival, and controls metastatic spread in orthotopic HNSCC tumor models. PD1-IL2v drives systemic activation and expansion of circulating and tumor-infiltrating cytotoxic T cells and NK cells while limiting Treg-mediated immunosuppression. These data show that PD1-L2v induces durable systemic tumor control in HNSCC.
Drying of Granular Ceramic Films: II, Drying Stress and Saturation Uniformity (1993)

Films composed of ceramic particles were observed during drying. The films were prepared from 20 vol% aqueous dispersions of α‐alumina and α‐quartz and were free of any organic binder. Conditions for uniform film saturation during drying were established by consideration of a liquid transport model and by direct observation of the drying films. Drying stresses were measured in situ by a substrate deflection method based on an optical interference technique. Simultaneous stress and weight measurements were used to determine stress as a function of saturation. The maximum stress occurred near 100% saturation and was approximately 2 and 1.1 MPa for films produced from 0.35‐and 0.68‐μm particles, respectively. The maximum stress decreased from 2 to 0.9 MPa for films produced from the 0.35‐μm particles when 0.005 wt% surfactant was added to the slurry. The surfactant decreased the liquid surface tension from 72 to 32 dyn/cm. These observations are direct evidence of the effects of capillary tension on the state of stress in a ceramic body. Mechanical properties of the green ceramic films were estimated by use of a linear elastic fracture model. Knowledge of the critical cracking thickness and maximum stress in the film was used to estimate the fracture resistance of the granular film. The fracture resistance values are approximately 0.02 and 0.007 MPa·m 1/2 for films produced from alumina and silica, respectively. The difference in mechanical behavior of the silica and alumina films is similar to that expected by the difference in Hamaker constants between the two materials.
Synthesis of well-defined poly(alkyl methacrylate)-graft-polylactone by sequential living polymerization (1999)

A novel combination of living polymerization reactions has been proposed for the controlled synthesis of poly(alkyl methacrylate)-graft-polylactones. This strategy relies upon the sequential living polymerization of alkyl methacrylates and aliphatic lactones, with an intermediate chemical transformation for shifting from the first mechanism to the second one. In the first step, an alkyl methacrylate (methyl and butyl) is copolymerized with 2-trimethylsiloxyethyl methacrylate (TMSEMA). This living anionic polymerization is initiated with diphenylhexyllithium( DPHLi) in the presence of a μ-ligand, lithium chloride, in THF at –78°C. The trimethylsiloxy groups are then hydrolyzed with release of hydroxyl groups which are reacted with triethylaluminum in order to form a multifunctional macroinitiator of the Al alkoxide type. The second step consists of the ring opening polymerization (ROP) of aliphatic lactones (ϵ-caprolactone, δ-valerolactone and 1,4,8-trioxaspiro[4.6]-9-undecanone (TOSUO)) with the formation of novel graft copolymers. As a result of the livingness of both the anionic and the ROP polymerization steps, the molecular weight of both the main backbone and the grafts is predictable, the apparent polydispersity is narrow (Mw/Mn from 1.05 to 1.30) and the grafting density can be controlled being dependent on the distribution of the hydroxyl groups within the precursor backbone.
Geometry and formation of twins in YBa2Cu3O7-x (1988)

Geometry and formation of twins in the orthorhombic YBa 2 Cu 3 O 7-x phase are studied by transmission electron microscopy and modeling. Samples with bulk superconductivity at 90K are produced by heating the stoichiometric 1:2:3 proportions of metal oxides with a single heat treatment schedule involving a heating rate of 5°C/min to 950°C (1 hr) and 1°C/min cooling to room temperature. Powder mixtures were formed by colloidal mixing of oxide powders or by molecular mixing techniques. Twinned domains with {110} twin boundaries, parallel to [001] of the orthorhombic lattice, usually form with both variants occurring in a single grain (Fig. 1). The twin boundary separation λ (Fig. 2) is dictated by energetic and geometrical requirements which are both related to Δa = b — a, where b and a are lattice parameters of the orthorhombic phase. Geometrical requirements lead to the estimate that the stable values of λ are integer values of the basic distance d.
Diffraction-Limited Impulse Response Image Reconstruction With a Single Imaging Pixel (2005)

In this paper, we will discuss two techniques to reconstruct diffraction-limited impulse response images by sub-pixel shifting the photodetector array and measuring the signal from a specific large area photodetector pixel.