gebhart/patrepeval huggingface dataset:
Molecular and physiological adaptation to prolonged drought stress in the leaves of two Andean potato genotypes (2008)

Responses to prolonged drought and recovery from drought of two South American potato (Solanum tuberosum L. ssp. andigena (Juz & Buk) Hawkes) landraces, Sullu and Ccompis were compared under field conditions. Physiological and biomass measurements, yield analysis, the results of hybridisation to a potato microarray platform (44 000 probes) and metabolite profiling were used to characterise responses to water deficit. Drought affected shoot and root biomass negatively in Ccompis but not in Sullu, whereas both genotypes maintained tuber yield under water stress. Ccompis showed stronger reduction in maximum quantum yield under stress than Sullu, and less decrease in stomatal resistance. Genes associated with PSII functions were activated during recovery in Sullu only. Evidence for sucrose accumulation in Sullu only during maximum stress and recovery was observed, in addition to increases in cell wall biosynthesis. A depression in the abundance of plastid superoxide dismutase transcripts was observed under maximum stress in Ccompis. Both sucrose and the regulatory molecule trehalose accumulated in the leaves of Sullu only. In contrast, in Ccompis, the raffinose oligosaccharide family pathway was activated, whereas low levels of sucrose and minor stress-mediated changes in trehalose were observed. Proline, and expression of the associated genes, rose in both genotypes under drought, with a 3-fold higher increase in Sullu than in Ccompis. The results demonstrate the presence of distinct molecular and biochemical drought responses in the two potato landraces leading to yield maintenance but differential biomass accumulation in vegetative tissues.
Ultrasound-guided Periventricular Stereotaxis (1984)

Intraoperative ultrasound can aid the biopsy of deep intracranial lesions. It is, perhaps, less clear whether ultrasound could be useful in functional neurosurgery, where the target is not abnormal in echogenicity. As an example, we chose to investigate in a dog model the periventricular gray target, which is frequently the choice for the placement of electrodes to control intractable pain. Autopsies showed the placement of our electrodes with less than 1 mm of error in four of five brains and a 1.5-mm error in the fifth brain. The largest error was seen to occur on the video screen and was due to our failure to tighten the guide properly. The potential advantages of this technique over conventional stereotaxis include the avoidance of: ventricular catheterization, the injection of contrast agent into the ventricles, the necessity for a stereotactic frame, and multiple x-ray exposures. Also, with real time scanning the surgeon has instant visual confirmation of electrode placement and can observe quickly any significant hematoma formation.
Ultrafiltration and Backfiltration during Hemodialysis (1995)

Ultrafiltration is the pressure-driven process by which hemodialysis removes excess fluid from renal failure patients. Despite substantial improvements in hemodialysis technology, three significant problems related to ultrafiltration remain: ultrafiltration volume control, ultrafiltration rate control, and backfiltration. Ultrafiltration volume control is complicated by the effects of plasma protein adsorption, hematocrit, and coagulation parameters on membrane performance. Furthermore, previously developed equations relating the ultrafiltration rate and the transmembrane pressure are not applicable to high-flux dialyzers, high blood flow rates, and erythropoietin therapy. Regulation of the ultrafiltration rate to avoid hypotension, cramps and other intradialytic complications is complicated by inaccurate estimates of dry weight and patient-to-patient differences in vascular refilling rates. Continuous monitoring of circulating blood volume during hemodialysis may enable a better understanding of the role of blood volume in triggering intradialytic symptoms and allow determination of optimal ultrafiltration rate profiles for hemodialysis. Backfiltration can occur as a direct result of ultrafiltration control and results in transport of bacterial products from dialysate to blood. By examining these problems from an engineering perspective, the authors hope to clarify what can and cannot be prevented by understanding and manipulating the fluid dynamics of ultrafiltration.
I’D DO ANYTHING TO CHANGE THE PAST (BUT I CANT DO "THAT") (2017)

Abstract This paper addresses a worry about backwards time travel. The worry is that there is something mysteriously inexplicable about the combination of commonplace events that will inevitably conspire to prevent the time traveler from doing something impossible such as killing her younger self. The worry is first distinguished from other problems for backwards time travel concerning its alleged impossibility or improbability. It is then shown that the worry is misplaced: there is in fact no real problem here. Yet the worry has been widely expressed—so a suggestion is also made as to why it is so easy to get into the position of thinking that there is a genuine problem here, when in fact there is not. Finally, in light of the resolution of the inexplicability worry, a new way of dealing with the other two problems for backwards time travel—concerning its alleged impossibility and improbability—is proposed.
Tools for forensic analysis of concrete structures (2004)

Computer-based analysis tools for forensic assessment of reinforced concrete structures are presented. The analysis tools, mostly in the form of nonlinear finite element procedures, are based on the concepts and formulations of the Modified Compression Field Theory. Relevant details regarding their formulation are provided. Development of realistic constitutive models and corroboration of the analysis procedures, through comprehensive experimental programs, are discussed. Also presented are graphics-based pre- and post-processors, which are of significant aid in structural modeling, input of data, and interpretation of analysis results. The details and results of a case study, illustrating the application and value of such analytical tools, are also discussed.
INERTIAL CONFINEMENT FUSION RESEARCH AT THE LABORATORY OF LASER ENERGETICS (2009)

First Page
Digital scaling of binary images (1979)

Thesis (M.S.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 1979.
A Vertical Organic Transistor Architecture for Fast Nonvolatile Memory (2016)

A new device architecture for fast organic transistor memory is developed, based on a vertical organic transistor configuration incorporating high-performance ambipolar conjugated polymers and unipolar small molecules as the transport layers, to achieve reliable and fast programming and erasing of the threshold voltage shift in less than 200 ns.
Designing Closed-Loop Models for Task Allocation (2023)

Automatically assigning tasks to people is challenging because human performance can vary across tasks for many reasons. This challenge is further compounded in real-life settings in which no oracle exists to assess the quality of human decisions and task assignments made. Instead, we find ourselves in a “closed” decision-making loop in which the same fallible human decisions we rely on in practice must also be used to guide task allocation. How can imperfect and potentially biased human decisions train an accurate allocation model? Our key insight is to exploit weak prior information on human-task similarity to bootstrap model training. We show that the use of such a weak prior can improve task allocation accuracy, even when human decision-makers are fallible and biased. We present both theoretical analysis and empirical evaluation over synthetic data and a social media toxicity detection task. Results demonstrate the efficacy of our approach.
Measurement and characterization of three-dimensional microstructures on precision roller surfaces (2016)

Precision roller with microstructures is the key tooling component in the precision embossing by roller process such as Roll-to-Roll to manufacture optical plastic plates or films with three dimensional (3D)-microstructures. Measurement and analysis of 3D-microstructures on a precision roller is essential before the embossing process is being undertaken to ensure the quality of the embossed surfaces. Different from 3D-microstructures on a planar surface, it is difficult to measure and characterize the 3D-microstructures on the cylindrical surface of a precision roller due to the geometrical complexity of such integrated surfaces such as V-groove microstructures on a cylindrical surface. This paper presents a study of method and algorithms for the measurement and characterization of 3D-microstructures on a precision roller surface. A feature-based characterization method (FBCM) is proposed to analyze the V-groove microstructures. In this method, a normal template is generated based on the design specifications, and the measured data is fitted with the feature points. Hence alignment and matching of the measured data to the normal template based on the derived feature points are undertaken. After that the V-groove is characterized by some feature parameters such as pitch, depth, angle of the V-grooves. The method also provides an approach for the analysis of burs generated during the machining of Vgroove microstructures. A precision roller with V-groove microstructures has been machined by a Four-axis ultraprecision machine and the machined surface is measured by a contact measuring instrument. The measured data are then characterized and analyzed by the proposed FBCM. The results are presented and discussed, and they indicate the dominant and regular machining errors that are involved in the machining of the V-groove microstructures on roller surfaces.
Rational Co‐Immobilization of Bi‐Enzyme Cascades on Porous Supports and their Applications in Bio‐Redox Reactions with In Situ Recycling of Soluble Cofactors (2012)

Abstract In bio‐redox cascade reactions that are immobilized on porous supports, mass‐transfer limitations may impede the effective concentration of the cofactor around the corresponding dehydrogenases. This main drawback has been addressed by the co‐immobilization of both the main and recycling dehydrogenases. Herein, we report tailor‐made co‐immobilization procedures to assemble three different bio‐redox orthogonal cascades in vitro (two selective reductions and one selective oxidation) with in situ cofactor‐regeneration. However, the co‐immobilization itself does not guarantee the success of the biotransformation because the same co‐immobilization chemistry may not be suitable for the two enzymes that are involved in the bio‐redox cascade. Therefore, our co‐immobilization system was optimized for each bi‐enzymatic cascade. In all cases, the optimized co‐immobilization procedure was more efficient in the biocatalytic cascade than if the two dehydrogenases were immobilized on two different carriers. In one specific case (one thermophilic cascade), the co‐immobilization of an optimal ratio of main/recycling dehydrogenases (1:5) on the same carrier resulted in a biocatalyst that was able to recycle NADH up to 9000 times per equivalent of substrate in 1 hour at 55 °C. Moreover, uniform distributions of both dehydrogenases across the porous surface also enhanced the recycling efficiency of the cofactor 1.5‐fold versus cascades in which the enzymes were not uniformly distributed across the same porous surface, presumably because of vicinal cooperation effects. Hence, this system for the co‐immobilization of bi‐enzymatic systems may be extended to other biocatalytic cascades, thereby opening a window for the optimization of other multi‐enzyme biotransformations in which cofactor‐recycling is necessary.
US Definitions, Current Use, and FDA Stance on Use of Platelet-Rich Plasma in Sports Medicine (2014)

With increased utilization of platelet-rich plasma (PRP), it is important for clinicians to understand the United States, the Food and Drug Administration (FDA) regulatory role and stance on PRP. Blood products such as PRP fall under the prevue of FDA's Center for Biologics Evaluation and Research (CBER). CBER is responsible for regulating human cells, tissues, and cellular and tissue-based products. The regulatory process for these products is described in the FDA's 21 CFR 1271 of the Code of Regulations. Under these regulations, certain products including blood products such as PRP are exempt and therefore do not follow the FDA's traditional regulatory pathway that includes animal studies and clinical trials. The 510(k) application is the pathway used to bring PRP preparation systems to the market. The 510(k) application allows devices that are "substantially equivalent" to a currently marketed device to come to the market. There are numerous PRP preparation systems on the market today with FDA clearance; however, nearly all of these systems have 510(k) clearance for producing platelet-rich preparations intended to be used to mix with bone graft materials to enhance bone graft handling properties in orthopedic practices. The use of PRP outside this setting, for example, an office injection, would be considered "off label." Clinicians are free to use a product off-label as long as certain responsibilities are met. Per CBER, when the intent is the practice of medicine, clinicians "have the responsibility to be well informed about the product, to base its use on firm scientific rationale and on sound medical evidence, and to maintain records of the product's use and effects." Finally, despite PRP being exempted, the language in 21 CFR 1271 has caused some recent concern over activated PRP; however to date, the FDA has not attempted to regulate activated PRP. Clinicians using activated PRP should be mindful of these concerns and continued to stay informed.
Efficacy of Home-Based Telerehabilitation vs In-Clinic Therapy for Adults After Stroke (2019)

ClinicalTrials.gov identifier: NCT02360488.
Comparison of different rearranged immunoglobulin kappa genes of a myeloma by electronmicroscopy and restriction mapping of cloned DNA: implications for “allelic exclusion” (1980)

We have studied the organization and function of different rearranged kappa genes in a myeloma, MOPC-21. Two kappa genes were cloned into Charon 4A and compared with each other and with a cloned germline CK gene by restriction mapping and electron microscopy. One MOPC-21 clone corresponds to the gene coding for the MOPC-21 kappa chain polypeptide; it has the V21 gene joined with the CK gene at the J2 sequence. The other MOPC-21 clone corresponds to a nonfunctional rearranged MOPC-21 kappa gene, except for a lkb deletion, 3' of J4. A similar deletion is also found in a "new" kappa gene present in NS-1, a cellular subclone of MOPC-21. The clone of the "nonfunctional" kappa gene has a V gene which is distinct from V21 which is joined to CK in the vicinity of J2. The undeleted form of this gene codes for a KRNA having the size of mature KmRNA which, however, is not translated into kappa chains. Thus the defect of the "nonfunctional" gene manifests itself at a late step of gene expression. The basis for "allelic exclusion" of antibody genes may simply be the complexity of the processes between genes and gene products, resulting in the expression of only one gene.
Design of synthetic materials for intracellular delivery of RNAs: From siRNA-mediated gene silencing to CRISPR/Cas gene editing (2018)

Ribonucleic acids (RNAs) possess great therapeutic potential and can be used to treat a variety of diseases. The unique biophysical properties of RNAs, such as high molecular weight, negative charge, hydrophilicity, low stability, and potential immunogenicity, require chemical modification and development of carriers to enable intracellular delivery of RNAs for clinical use. A variety of nanomaterials have been developed for the effective in vivo delivery of short/ small RNAs, messenger RNAs, and RNAs required for gene editing technologies including clustered regularly interspaced palindromic repeat (CRISPR)/Cas. This review outlines the challenges of delivering RNA therapeutics, explores the chemical synthesis of RNA modifications and carriers, and describes the efforts to design nanomaterials that can be used for a variety of clinical indications.
Production of cis-9,trans-11-Conjugated Linoleic Acid in Camelina Meal and Okara by an Oat-Assisted Microbial Process (2010)

A method to obtain cis-9,trans-11-conjugated linoleic acid (c9,t11-CLA) into camelina meal and okara, the byproducts of plant oil processing, is described. The triacylglycerols in these materials were hydrolyzed with the aid of lipolytically active oat flour for 3 weeks at a water activity of 0.70. The resulting free linoleic acid was then isomerized predominantly to c9,t11-CLA by resting cells of Propionibacterium freudenreichii ssp. shermanii in 5% aqueous camelina meal and okara slurries. In camelina meal slurries, c9,t11-CLA content after 21 h of fermentation was 0.83 mg/mL and 96 mg/g of total lipids. In okara slurries, the content of c9,t11-CLA was 1.1 mg/mL and 78 mg/g of total lipids. Doubling the hydrolysis time in okara increased the subsequent content of c9,t11-CLA to 1.4 mg/mL, corresponding to 110 mg/g of total lipids. After isomerization, CLA was concentrated into a particulate material of the slurries by acidification. The results suggest that the method is applicable to a wide spectrum of lipid-containing plant materials to further increase their nutritional value.
Cyclophanes with self-recognising components (1995)

High dilution techniques have been employed to construct a series of charged flexible cyclophanes comprised of π-electron-rich hydroquinone and π-electron-deficient bipyridinium residues linked by polyether spacer units of varying length: significant conformational changes, leading to intramolecular and intermolecular interactions between the π-donors and π-acceptors, have been observed—as evidenced by X-ray crystallographic and variable temperature 1H NMR and 2D ROESY spectroscopic investigations—within the series of the cyclophanes both in the solid and solution states as a result of increasing the lengths of the polyether spacer units.
Search for dark matter in association with an energetic photon in pp collisions at $$ \sqrt{s} $$ = 13 TeV with the ATLAS detector (2021)

A bstract A search for dark matter is conducted in final states containing a photon and missing transverse momentum in proton-proton collisions at $$ \sqrt{s} $$ <mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"> <mml:msqrt> <mml:mi>s</mml:mi> </mml:msqrt> </mml:math> = 13 TeV. The data, collected during 2015–2018 by the ATLAS experiment at the CERN LHC, correspond to an integrated luminosity of 139 fb − 1 . No deviations from the predictions of the Standard Model are observed and 95% confidence-level upper limits between 2.45 fb and 0.5 fb are set on the visible cross section for contributions from physics beyond the Standard Model, in different ranges of the missing transverse momentum. The results are interpreted as 95% confidence-level limits in models where weakly interacting dark-matter candidates are pair-produced via an s -channel axial-vector or vector mediator. Dark-matter candidates with masses up to 415 (580) GeV are excluded for axial-vector (vector) mediators, while the maximum excluded mass of the mediator is 1460 (1470) GeV. In addition, the results are expressed in terms of 95% confidence-level limits on the parameters of a model with an axion-like particle produced in association with a photon, and are used to constrain the coupling g a Z γ of an axion-like particle to the electroweak gauge bosons.
A novel architecture for dense wavelength‐division multiplexing/subcarrier multiplexing networks (2001)

Abstract We propose and demonstrate a new survivable dense wavelength‐division multiplexing/subcarrier multiplexing (DWDM/SCM) network based on the star–bus–ring architecture (SBRA). This architecture ensures an OBI‐free optical network, and can serve tremendous subscribers. In addition, remote nodes and bidirectional wavelength add/drop multiplexers (B–WADMs) are designed by using simple optical switches to reconfigure the network under link failure. We further set up an experimental network to demonstrate the feasibility of the proposed architecture. © 2002 John Wiley &amp; Sons, Inc. Microwave Opt Technol Lett 32: 51–56, 2002.
Diffusional microtitration: stationary or nonstationary reagent delivery (1988)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTDiffusional microtitration: stationary or nonstationary reagent deliveryMiklos. GratzlCite this: Anal. Chem. 1988, 60, 19, 2147–2152Publication Date (Print):October 1, 1988Publication History Published online1 May 2002Published inissue 1 October 1988https://pubs.acs.org/doi/10.1021/ac00170a033https://doi.org/10.1021/ac00170a033research-articleACS PublicationsRequest reuse permissionsArticle Views35Altmetric-Citations7LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Photonic crystals possessing multiple Weyl points and the experimental observation of robust surface states (2016)

Weyl points, as monopoles of Berry curvature in momentum space, have captured much attention recently in various branches of physics. Realizing topological materials that exhibit such nodal points is challenging and indeed, Weyl points have been found experimentally in transition metal arsenide and phosphide and gyroid photonic crystal whose structure is complex. If realizing even the simplest type of single Weyl nodes with a topological charge of 1 is difficult, then making a real crystal carrying higher topological charges may seem more challenging. Here we design, and fabricate using planar fabrication technology, a photonic crystal possessing single Weyl points (including type-II nodes) and multiple Weyl points with topological charges of 2 and 3. We characterize this photonic crystal and find nontrivial 2D bulk band gaps for a fixed k<sub>z</sub> and the associated surface modes. The robustness of these surface states against k<sub>z</sub>-preserving scattering is experimentally observed for the first time.