gebhart/patrepeval huggingface dataset:
Adaptive strategies for graph-state growth in the presence of monitored errors (2007)

Graph states (or cluster states) are the entanglement resource that enables one-way quantum computing. They can be grown by projective measurements on the component qubits. Such measurements typically carry a significant failure probability. Moreover, they may generate imperfect entanglement. Here we describe strategies to adapt growth operations in order to cancel incurred errors. Nascent states that initially deviate from the ideal graph states evolve toward the desired high fidelity resource without impractical overheads. Our analysis extends the diagrammatic language of graph states to include characteristics such as tilted vertices, weighted edges, and partial fusion, which arise from experimental imperfections. The strategies we present are relevant to parity projection schemes such as optical path erasure with distributed matter qubits.
Enabling Machine Learning-Ready HPC Ensembles with Merlin (2019)

With the growing complexity of computational and experimental facilities, many scientific researchers are turning to machine learning (ML) techniques to analyze large scale ensemble data. With complexities such as multi-component workflows, heterogeneous machine architectures, parallel file systems, and batch scheduling, care must be taken to facilitate this analysis in a high performance computing (HPC) environment. In this paper, we present Merlin, a workflow framework to enable large ML-friendly ensembles of scientific HPC simulations. By augmenting traditional HPC with distributed compute technologies, Merlin aims to lower the barrier for scientific subject matter experts to incorporate ML into their analysis. In addition to its design, we describe some example applications that Merlin has enabled on leadership-class HPC resources, such as the ML-augmented optimization of nuclear fusion experiments and the calibration of infectious disease models to study the progression of and possible mitigation strategies for COVID-19.
Design of a 3D-printed, open-source wrist-driven orthosis for individuals with spinal cord injury (2018)

Assistive technology, such as wrist-driven orthoses (WDOs), can be used by individuals with spinal cord injury to improve hand function. A lack of innovation and challenges in obtaining WDOs have limited their use. These orthoses can be heavy and uncomfortable for users and also time-consuming for orthotists to fabricate. The goal of this research was to design a WDO with user (N = 3) and orthotist (N = 6) feedback to improve the accessibility, customizability, and function of WDOs by harnessing advancements in 3D-printing. The 3D-printed WDO reduced hands-on assembly time to approximately 1.5 hours and the material costs to $15 compared to current fabrication methods. Varying improvements in users' hand function were observed during functional tests, such as the Jebsen Taylor Hand Function Test. For example, one participant's ability on the small object task improved by 29 seconds with the WDO, while another participant took 25 seconds longer to complete this task with the WDO. Two users had a significant increase in grasp strength with the WDO (13-122% increase), while the other participant was able to perform a pinching grasp for the first time. The WDO designs are available open-source to increase accessibility and encourage future innovation.
Chemiluminescent aerosol spray detector for liquid chromatography (1980)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTChemiluminescent aerosol spray detector for liquid chromatographyJohn W. Birks and Myron C. KugeCite this: Anal. Chem. 1980, 52, 6, 897–901Publication Date (Print):May 1, 1980Publication History Published online1 May 2002Published inissue 1 May 1980https://pubs.acs.org/doi/10.1021/ac50056a028https://doi.org/10.1021/ac50056a028research-articleACS PublicationsRequest reuse permissionsArticle Views82Altmetric-Citations14LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Rapid consolidation of powdered materials by induction hot pressing (2011)

A rapid hot press system in which the heat is supplied by RF induction to rapidly consolidate thermoelectric materials is described. Use of RF induction heating enables rapid heating and consolidation of powdered materials over a wide temperature range. Such rapid consolidation in nanomaterials is typically performed by spark plasma sintering (SPS) which can be much more expensive. Details of the system design, instrumentation, and performance using a thermoelectric material as an example are reported. The Seebeck coefficient, electrical resistivity, and thermal diffusivity of thermoelectric PbTe material pressed at an optimized temperature and time in this system are shown to agree with material consolidated under typical consolidation parameters.
Latin America: Reduced S&amp;T Investment Puts Sustainable Development at Risk (2020)

Latin America is home to more than 600 million people and has considerable natural and human resources. However, investment in science and technology (S&amp;T) lags far behind that in developed countries. This gap represents a barrier to the development of economies based on knowledge and hampers the region's ability to tackle environmental and social problems. This lack of investment is evident in the extreme case of Venezuela, where much of the science workforce has fled economic chaos, but also in every Latin American country, including science powers such as Brazil and Argentina, where federal budgets in science, technology and education have been drastically reduced in recent years. Investments in S&amp;T foster cooperation, commerce and good will and enhance resilience in the face of environmental and social turmoil. Therefore, scientists must start to actively engage governments and encourage long-term spending in S&amp;T to support the development of Latin American societies.
Isolation of 5?- and 5?-dihydrorubrosterone fromSilene otites L. (Wib) (2000)

5 alpha-Dihydrorubrosterone (2 beta, 3 beta, 14 alpha, 17 beta-tetrahydroxy-5 alpha-androst-7-ene-6-one), a new 19-carbon 5 alpha-ecdysteroid, was isolated together with its 5 beta counterpart from the aerial parts of Silene otites L. (Wib.) (Caryophyllaceae) by a combination of solvent partition, low-pressure column chromatography, thin-layer chromatography (normal-phase and reversed-phase) and finally HPLC. Mass spectrometry and nuclear magnetic resonance spectroscopic procedures were used for compound characterization.
FLOOZY of petunia is a flavin mono-oxygenase-like protein required for the specification of leaf and flower architecture (2002)

The mechanisms that determine the relative positions of floral organs, and thereby their numbers, is a poorly understood aspect of flower development. We isolated a petunia mutant, floozy (fzy), in which the formation of floral organ primordia in the outermost three floral whorls and one of the two bracts at the base of the flower is blocked at an early stage. In addition, fzy mutants fail to generate secondary veins in leaves and bracts and display a decreased apical dominance in the inflorescence. FZY encodes an enzyme with homology to flavin mono-oxygenases and appears to be the ortholog of YUCCA genes of Arabidopsis. FZY is expressed in young leafs and bracts and in developing flowers. In young floral meristems FZY is expressed in the center of the meristem dome and, later, expression becomes localized on the flanks of the initiating petal and stamen primordia and at several sites in maturing anthers and carpels. These findings indicate that FZY is involved in synthesizing a signaling compound that is required for floral organ initiation and specification of the vascularization pattern in leaves. Although fzy mutants contain normal auxin levels, ectopic expression of FZY results in excessive auxin accumulation, suggesting that the signaling compound is auxin.
Polyunsaturated fatty acids inhibit a pentameric ligand-gated ion channel through one of two binding sites (2021)

ABSTRACT Polyunsaturated fatty acids (PUFAs) inhibit pentameric ligand-gated ion channels (pLGICs) but the mechanism of inhibition is not well understood. The PUFA, docosahexaenoic acid (DHA), inhibits agonist responses of the pLGIC, ELIC, more effectively than palmitic acid, similar to the effects observed in the GABA A receptor and nicotinic acetylcholine receptor. Using photo-affinity labeling and coarse-grained molecular dynamics simulations, we identified two fatty acid binding sites in the outer transmembrane domain (TMD) of ELIC. Fatty acid binding to the photolabeled sites is selective for DHA over palmitic acid, and specific for an agonist-bound state. Hexadecyl-methanethiosulfonate modification of one of the two fatty acid binding sites in the outer TMD recapitulates the inhibitory effect of PUFAs in ELIC. The results demonstrate that DHA selectively binds to multiple sites in the outer TMD of ELIC, but that state-dependent binding to a single intrasubunit site mediates DHA inhibition of ELIC.
Possible role of RKIP in cytotrophoblast migration: immunohistochemical and in vitro studies (2011)

Raf kinase inhibitor protein (RKIP) regulates growth and differentiation signaling of mitogen-activated protein kinases (MAPK), GRK2 and NF-kappaB pathways each of which regulates cytotrophoblast differentiation and normal placental development. We show here that RKIP is expressed in human normal and preeclampic placentas as detected by immunostaining. RKIP was detected in villous cytotrophoblast in normal placenta and switched to syncytiotrophoblast in pre-eclampsia (PE)-complicated pregnancies. RKIP was also localized in extravillous cytotrophoblast of cell islands and cell columns both in normal and in PE placentas, although staining was less uniform in the latter specimens. In order to test RKIP involvement in cytotrophoblast function, we performed in vitro studies on HTR-8/SVneo cells, a first trimester cytotrophoblast cell line. We show that the RKIP inhibitor locostatin reduces ERK phosphorylation and impairs HTR-8/SV neo cells motility in wound closure experiments. We also document the presence of GRK2 mRNA, the reduction of phosphorylated RKIP expression by locostatin and the induction of PAI mRNA expression in HTR-8/SV neo cells, suggesting the involvement of GRK2 and NF-kappaB pathways in these cells. In conclusion, our work provides evidence that RKIP is a novel factor expressed in cytotrophoblast cells where it likely regulates cell migration.
Epidemiology of dengue in Sri Lanka before and after the emergence of epidemic dengue hemorrhagic fever. (2002)

Before 1989, dengue epidemiology in Sri Lanka was characterized by frequent transmission of all four dengue serotypes but a low incidence of dengue hemorrhagic fever (DHF). After 1989, cases of DHF dramatically increased. Here we present the results of epidemiologic studies conducted in Colombo, Sri Lanka before and after epidemic emergence of DHF in 1989. We compared the proportion of dengue cases among people with fever attending clinics from 1980 to 1984 and in 1997 and 1998 to determine if an increase in dengue transmission was associated with more DHF cases being reported. We also compared the relative distribution of dengue virus serotypes circulating in Colombo before and after the emergence of DHF. We detected no significant differences in dengue as a proportion of fever cases or in serotype distribution between the pre and post-DHF periods. We conclude that an increase in virus transmission or a change in circulating serotypes does not explain the epidemic emergence of DHF in Sri Lanka.
The Influence of Powder Particle Size on Behavior of Hot Plastic Deformation, Structure and Magnetic Properties of Nd-Fe-B Die-Upset Magnets (2012)

The influence of powder particle size on behaviour of hot plastic deformation, structure and magnetic properties of Nd–Fe–B die-upset magnets have been examined. It was found, that powder particle size strongly affected plastic properties of material during hot deformation process. Precursors made of powder with the smallest particles (d &lt; 32 μm) shown bigger plastic resistance than those made of powder with the larger ones (32 – 88 or 88 – 350 μm). For the same pressing force and temperature, applied within hot plastic deformation process, precursors made of the smallest particle powder allowed to obtain only 56 % deformation, while the another, made of larger particle powder: 65% deformation.
A Stereochemically Driven Supramolecular Polymerisation (2018)

Anthracyclines self-assemble in water into dimers. In the presence of sufficiently high salt (NaCl) concentrations, solutions of the antibiotic doxorubicin, but not those of the closely related molecules daunomycin and epirubicin, turn into gels barely compatible with the presence of small oligomers. The use of spectroscopic, scattering, imaging and computational techniques, allowed light to be shed on the self-assembly process that triggered doxorubicin gelification. A complex picture emerged, with doxorubicin molecules assembled into long, highly chiral, supramolecular aggregates made of hundreds of units, showing redshifted fluorescence spectra, very short fluorescence lifetimes and small-angle X-ray scattering profiles compatible with long cylinders. The involvement of specific chemical groups and the need for a specific stereochemistry of the monomers in the formation of a hydrogen-bond network to stabilise the supramolecular aggregates was supported by molecular dynamics calculations. A salt-induced, temperature-dependent, cooperative nucleation-elongation supramolecular polymerisation of the doxorubicin molecules is deduced.
High-Sensitivity Analysis of Naturally Occurring Sugar Chains, Using a Novel Fluorescent Linker Molecule (2009)

To analyse the binding of sugar chains to proteins, viruses and cells, the surface plasmon resonance (SPR) technique is very convenient and effective because it is a real-time, non-destructive detection system. Key to this method is linker compounds for immobilization of the sugar chains to the gold-coated chip for SPR. Also, well-designed fluorescent labelling reagents are essential when analysing the structure of trace amounts of sugar chains derived from natural sources, such as glycoproteins on the surface of specific cells. In this report, we developed a novel linker molecule, named 'f-mono', which has both of these properties: simple immobilization chemistry and a fluorescent label. Since the molecule contains a 2,5-diaminopyridyl group and a thioctic acid group, conjugation with sugar chains can be achieved using the well-established reductive amination reaction. This conjugate of sugar chain and fluorescent linker (fluorescent ligand-conjugate, FLC) has fluorescent properties (ex. 335 nm, em. 380 nm), and as little as 1 microg of FLC can be easily purified using HPLC with a fluorescent detector. MS and MS/MS analysis of the FLC is also possible. As a +2 Da larger MS peak ([M + H + 2](+) ion) was always associated with the theoretical MS peak ([M + H](+)) (due to the reduction of the thioctic acid moiety), the MS peaks of the FLC were easily found, even using unfractionated crude samples. Immobilization of the FLC onto gold-coated chips, and their subsequent SPR analyses were successively accomplished, as had been performed previously using non-fluorescent ligand conjugates.
Thickness Dependence of the Crystalline Structure and Hole Mobility in Thin Films of Low Molecular Weight Poly(3-hexylthiophene) (2008)

The morphology of thin films at the polymer-to-insulator interface is of great importance for OFET applications. In order to find a relation between the thickness dependence of structural order and the electrical parameters in low molecular weight (Mw ∼ 2.5 kDa) poly(3-hexylthiophene) (P3HT), we have performed grazing-incidence X-ray diffraction and field effect mobility measurements. The samples were prepared from solutions with different concentrations by spin-coating mainly onto HMDS-pretreated Si/SiO2 substrates, resulting in film thicknesses that vary between 10 and 200 nm. The X-ray diffraction curves display Bragg peaks of nanocrystallites diluted into an amorphous matrix where the orientational distribution of the crystallites changes significantly as a function of film thickness. The orientation of nanocrystals was found to be random for the thickest films. Reducing the film thickness, we found an increase in the alignment of the stacking direction of molecules along the surface normal. At same time the mean crystal size along the film normal decreases less than the decrease of film thickness. This is interpreted by a preferential pinning of nanocrystals at the film-to-insulator interface when the crystal size becomes in the order of the film thickness, i.e., below 25 nm. The model of pinning effect is supported by temperature-resolved X-ray measurements performed between room temperature and melting temperature. For films thicker than 25 nm the phase transition appears rather continuously with temperature, but it becomes sharp for thinner films. In contrast to X-ray measurements the field effect mobility is found to be constant within the whole investigated range. Our findings give evidence that the charge transport in low molecular weight P3HT is dominated by the ultrathin layer stabilized at the film-to-insulator interface. Despite the very uniform orientation of the crystallites within this layer, the field effect mobility remains low for all thicknesses. This is attributed to the presence of amorphous regions between highly crystalline domains, which ultimately limits the charge transport in the layer plane.
Phosphorylation of the myosin regulatory light chain plays a role in motility and polarity during<i>Dictyostelium</i>chemotaxis (2002)

The myosin regulatory light chain (RLC) of Dictyostelium discoideum is phosphorylated at a single serine site in response to chemoattractant. To investigate the role of the phosphorylation of RLC in both motility and chemotaxis, mutants were generated in which the single phosphorylatable serine was replaced with a nonphosphorylatable alanine. Several independent clones expressing the mutant RLC in the RLC null mutant, mlcR(-), were obtained. These S13A mutants were subjected to high resolution computer-assisted motion analysis to assess the basic motile behavior of cells in the absence of a chemotatic signal, and the chemotactic responsiveness of cells to the spatial, temporal and concentration components of natural cAMP waves. In the absence of a cAMP signal, mutant cells formed lateral pseudopods less frequently and crawled faster than wild-type cells. In a spatial gradient of cAMP, mutant cells chemotaxed more efficiently than wild-type cells. In the front of simulated temporal and natural waves of cAMP, mutant cells responded normally by suppressing lateral pseudopod formation. However, unlike wild-type cells, mutant cells did not lose cellular polarity at the peak and in the back of either wave. Since depolarization at the peak and in the descending phase of the natural wave is necessary for efficient chemotaxis, this deficiency resulted in a decrease in the capacity of S13A mutant cells to track natural cAMP waves relayed by wild-type cells, and in the fragmentation of streams late in mutant cell aggregation. These results reveal a regulatory pathway induced by the peak and back of the chemotactic wave that alters RLC phosphorylation and leads to cellular depolarization. We suggest that depolarization requires myosin II rearrangement in the cortex facilitated by RLC phosphorylation, which increases myosin motor function.
EFFECT OF MOYAMOYA DISEASE ON NEUROPSYCHOLOGICAL FUNCTIONING IN ADULTS (2008)

The present findings suggest that moyamoya disease diagnosed in adults can impair cognition but that the effect is not as severe as in pediatric cases. Executive functioning is most affected. Memory and, to a large extent, intellect are spared. The current pattern of results suggests brain region-behavior correlations that deserve further study.
Shape optimization for high quality factor flexural mechanical resonators operated in air (2016)

International audience
Case Report of an Extensively Drug-Resistant Klebsiella pneumoniae Infection With Genomic Characterization of the Strain and Review of Similar Cases in the United States (2018)

Abstract Reports of extensively drug-resistant and pan-drug-resistant Klebsiella pneumoniae (XDR-KP and PDR-KP) cases are increasing worldwide. Here, we report a case of XDR-KP with an in-depth molecular characterization of resistance genes using whole-genome sequencing, and we review all cases of XDR-KP and PDR-KP reported in the United States to date.
Transgenic over‐expression of C1q/TNF Related Protein‐1 (CTRP1) in mice increases fatty acid oxidation and reduces adiposity on a high‐fat diet (2011)

Since the discoveries of leptin, the contribution of adipose tissue as an active endocrine organ has become an essential consideration for the understanding of metabolic diseases. Our laboratory recently discovered a family of novel secreted proteins homologous to adiponectin, designated as C1q/TNF‐related proteins 1‐10 (CTRP1‐10). This study focuses on the metabolic function of CTRP1, a circulating endocrine factor that is produced by adipose tissue. Here we show that circulating levels of CTRP1 are significantly elevated in ob/ob and diet‐induced obese mice relative to lean controls. We generated a transgenic mouse model that over‐expresses CTRP1 (CTRP1‐Tg). When fed a high‐fat diet, we observed a 12 % decrease in body weight gain in CTRP1‐Tg mice relative to control littermates, primarily caused by a reduction in fat mass (−29%), with no significant change in lean body mass. Further, the reduction in adiposity is not due to any changes in food intake or physical activity levels. Instead, this is due to enhanced whole body fatty acid oxidation and energy expenditure based on indirect calorimetry study. Additionally, diet‐induced obese CTRP1‐Tg mice demonstrate increased sensitivity to insulin and increased tolerance to pyruvate relative to control mice. Together, this study provides the first in vivo evidence that CTRP1 is a bona fide adipokine that regulates energy storage and expenditure.
Development of new interatomic potentials appropriate for crystalline and liquid iron (2003)

Two procedures were developed to fit interatomic potentials of the embedded-atom method (EAM) form and applied to determine a potential which describes crystalline and liquid iron. While both procedures use perfect crystal and crystal defect data, the first procedure also employs the first-principles forces in a model liquid and the second procedure uses experimental liquid structure factor data. These additional types of information were incorporated to ensure more reasonable descriptions of atomic interactions at small separations than is provided using standard approaches, such as fitting to the universal binding energy relation. The new potentials (provided herein) are, on average, in better agreement with the experimental or first-principles lattice parameter, elastic constants, point-defect energies, bcc–fcc transformation energy, liquid density, liquid structure factor, melting temperature and other properties than other existing EAM iron potentials.