gebhart/patrepeval huggingface dataset:
Synthesis and Characterization of Silica-Encapsulated Iron Oxide Nanoparticles (2014)

The properties of magnetic core-shell nanoparticles greatly depend on their core sizes and shell materials. Silica shell can prevent the magnetic nanoparticles from corrosion and agglomeration. In addition, the hydrolyzed silica can provide silanol groups to facilitate surface biofunctionalization. In this paper, superparamagnetic Fe <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sub> O <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">4</sub> nanoparticles coated with SiO <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> shell were prepared by a one-pot water-in-oil microemulsion method. Transmission electron microscopy (TEM), scanning electron microscopy (SEM), and vibrating sample magnetometry (VSM) were utilized to characterize the morphology and magnetic properties of the synthesized nanoparticles. The results indicated that by tuning the water/surfactant molar ratio (Wo) of the microemulsion system, core size of the resulting Fe <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sub> O <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">4</sub> nanoparticles can be altered. The size-controllable silica-encapsulated Fe <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">3</sub> O <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">4</sub> superparamagnetic nanoparticles have great potential to be applied as multifunctional tracer materials for magnetic particle imaging (MPI).
Bi-impulse response design of isotropic quadratic filters (1990)

The bi-impulse response of a 1-D or 2-D quadratic Volterra filter is introduced as a mathematical tool able to completely describe the nonlinear operator. The conditions that must be satisfied in order to obtain isotropic input/output relations are studied. The result is a formal framework that allows simple but effective operators (particularly for image enhancement and preprocessing) to be designed and a deeper insight into the properties of Volterra filters to be acquired. Examples of design and of the performance obtained by processing natural and synthetic images are presented.
Autometallographic Silver Enhancement of Zinc Sulfide Crystals Created in Cryostat Sections from Human Brain Biopsies: A New Technique that Makes it Feasible to Demonstrate Zinc Ions in Tissue Sections from Biopsies and Early Autopsy Material (1997)

We present a new technique that allows zinc ions in synaptic and secretory vesicles of biopsy and early autopsy material (< 2 hr post mortem) to be transformed to nanometer-sized zinc sulfide crystal lattices for subsequent autometallographic (AMG) development. Human brain biopsies, or other tissue samples containing zinc-enriched (ZEN) cells, are frozen in liquid nitrogen or by CO2 gas immediately after removal. The tissue blocks are cut in a cryostat and the sections placed on glass slides. The slides are transferred to an H2S exposure chamber placed in a -15 C freezer. After 1-24 hr of gas exposure the sections are removed from the chamber, fixed while thawing, and dehydrated. The sections are then exposed to an AMG developer. AMG causes silver enhancement of zinc sulfide crystal lattices created in the tissues through the H2S exposure, making them visible. It is imperative that the tissues are frozen instantaneously after removal, because loosely bound or free zinc ions start leaving their vesicular compartment soon after death. The AMG technique can, despite inadequate fixation and damage to the tissue caused by freezing, also be used to trace zinc ions at ultrastructural levels, and it is demonstrated that zinc ions in the human neocortex are located in synaptic vesicles. In the few human biopsies analyzed thus far, the light microscopic pattern created by the silver-enhanced ZEN terminals resembles that seen in the neocortex of rat brain. The technique has been applied to cryostat sections from neocortex biopsies of five individuals undergoing brain surgery. Biopsies from three patients resulted in satisfactory AMG-stained sections. Rat brains removed and frozen immediately after decapitation constituted the material on which the present technique was developed. Such material results in an almost uniform high quality of staining, and we found that unexposed sections can be stored for at least 5 months at -80 C without ensuing significant loss of AMG staining intensity.
ViFi (2014)

We consider an architecture in which the same WiFi infrastructure can be dynamically shared among multiple operators. Our system, ViFi, virtualizes WLAN resources, allowing for controlled sharing of both the uplink and downlink bandwidth. ViFi operates with stock 802.11 clients, and can be implemented entirely as a software add-on for commodity 802.11 APs.
Synthesis of a Functionalized Salen−Copper Complex and Its Interaction with DNA (1996)

An original procedure for efficient synthesis of a functionalized salen·copper complex is reported. The mode of binding to DNA of the salen·CuII complex was investigated by viscometry as well as by absorption, circular, and linear dichroism spectroscopy. The complex can induce DNA strand breakage in the presence of a reducing agent as revealed by a plasmid cleavage assay. The spectroscopic and biochemical data indicate that the salen·CuII complex induces single-stranded breaks via an interaction within one of the grooves of the double helix.
The total synthesis of angular [4]- and [5]phenylene (1992)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTThe total synthesis of angular [4]- and [5]phenyleneRachel H. Schmidt-Radde and K. Peter C. VollhardtCite this: J. Am. Chem. Soc. 1992, 114, 24, 9713–9715Publication Date (Print):November 1, 1992Publication History Published online1 May 2002Published inissue 1 November 1992https://pubs.acs.org/doi/10.1021/ja00050a091https://doi.org/10.1021/ja00050a091research-articleACS PublicationsRequest reuse permissionsArticle Views591Altmetric-Citations63LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Whole genome amplification of cell-free DNA enables detection of circulating tumor DNA mutations from fingerstick capillary blood (2018)

The ability to measure mutations in plasma cell-free DNA (cfDNA) has the potential to revolutionize cancer surveillance and treatment by enabling longitudinal monitoring not possible with solid tumor biopsies. However, obtaining sufficient quantities of cfDNA remains a challenge for assay development and clinical translation; consequently, large volumes of venous blood are typically required. Here, we test proof-of-concept for using smaller volumes via fingerstick collection. Matched venous and fingerstick blood were obtained from seven patients with metastatic breast cancer. Fingerstick blood was separated at point-of-care using a novel paper-based concept to isolate plasma centrifuge-free. Patient cfDNA was then analyzed with or without a new method for whole genome amplification via rolling-circle amplification (WG-RCA). We identified somatic mutations by targeted sequencing and compared the concordance of mutation detection from venous and amplified capillary samples by droplet-digital PCR. Patient mutations were detected with 100% concordance after WG-RCA, although in some samples, allele frequencies showed greater variation likely due to differential amplification or primer inaccessibility. These pilot findings provide physiological evidence that circulating tumor DNA is accessible by fingerstick and sustains presence/absence of mutation detection after whole-genome amplification. Further refinement may enable simpler and less-invasive methods for longitudinal or theranostic surveillance of metastatic cancer.
Enhanced Protection by Recombinant Newcastle Disease Virus Expressing Infectious Bronchitis Virus Spike Ectodomain and Chicken Granulocyte-Macrophage Colony-Stimulating Factor (2021)

We previously reported that recombinant Newcastle disease virus LaSota (rLS) expressing infectious bronchitis virus (IBV) Arkansas (Ark)-type trimeric spike (S) ectodomain (Se; rLS/ArkSe) provides suboptimal protection against IBV challenge. We have now developed rLS expressing chicken granulocyte-macrophage colony-stimulating factor (GMCSF) and IBV Ark Se in an attempt to enhance vaccine effectiveness. In the current study, we first compared protection conferred by vaccination with rLS/ArkSe and rLS/ArkSe.GMCSF. Vaccinated chickens were challenged with virulent Ark, and protection was determined by clinical signs, viral load, and tracheal histomorphometry. Results showed that coexpression of GMCSF and the Se from rLS significantly reduced tracheal viral load and tracheal lesions compared with chickens vaccinated with rLS/ArkSe. In a second experiment, we evaluated enhancement of cross-protection of a Massachusetts (Mass) attenuated vaccine by priming or boosting with rLS/ArkSe.GMCSF. Vaccinated chickens were challenged with Ark, and protection was evaluated. Results show that priming or boosting with the recombinant virus significantly increased cross-protection conferred by Mass against Ark virulent challenge. Greater reductions of viral loads in both trachea and lachrymal fluids were observed in chickens primed with rLS/ArkSe.GMCSF and boosted with Mass. Consistently, Ark Se antibody levels measured with recombinant Ark Se protein-coated ELISA plates 14 days after boost were significantly higher in these chickens. Unexpectedly, the inverse vaccination scheme, that is, priming with Mass and boosting with the recombinant vaccine, proved somewhat less effective. We concluded that a prime and boost strategy by using rLS/ArkSe.GMCSF and the worldwide ubiquitous Mass attenuated vaccine provides enhanced cross-protection. Thus, rLS/GMCSF coexpressing the Se of regionally relevant IBV serotypes could be used in combination with live Mass to protect against regionally circulating IBV variant strains.
Secure Multi-Party Computation of Boolean Circuits with Applications to Privacy in On-Line Marketplaces. (2011)

Abstract. Protocols for generic secure multi-partycomputation (MPC) generally come in two forms: they either represent the function being computed as a boolean circuit, or as an arithmetic circuit over a large field. Either type of protocol can be used for any function, but the choice of which protocol to use can have a significant impact on efficiency. The magnitude of the effect, however, has never been quantified. With this in mind, we implement the MPC protocol of Goldreich, Micali, and Wigderson [13], which uses a boolean representation and is secure against a semi-honest adversary corrupting any number of parties. We then consider applications of secure MPC in on-line marketplaces, where customers select resources advertised by providers and it is desired to ensure privacy to the extent possible. Problems here are more naturally formulated in terms of boolean circuits, and we study the performance of our MPC implementation relative to existing ones that use an arithmetic-circuit representation. Ourprotocol easily handles tens ofcustomers/providers and thousands of resources, and outperforms existing implementations including FairplayMP [3], VIFF [11], and SEPIA [7]. 1
Coherent reconstruction of a textile and a hidden object with terahertz radiation (2019)

Imaging through scattering materials is of utmost importance, especially for security and biomedical imaging. Unlike the rest of the electromagnetic spectrum, terahertz radiation is a non-ionizing probe and allows imaging deep through non-conducting materials with sub-millimeter resolution. Here, we propose a coherent imaging technique reconstructing two objects, hidden one behind the other, from relative shifts between them. Experimental reconstructions at 𝜆=96.5 μm of amplitude and phase objects hidden behind a glass fabric sample are presented. The hidden objects are retrieved with a lateral resolution of ≈1.5𝜆 and a depth resolution of ≈𝜆/10. Besides envisioning its use in non-invasive imaging, we anticipate that, in selected applications, the suggested approach can replace a similar phase retrieval technique, namely ptychography.
High-yielding syntheses of hydrophilic conjugatable chlorins and bacteriochlorins (2009)

Next-generation photodynamic therapy agents based upon the conjugation of multiple photosensitizers to a targeting backbone will allow for more efficacious light-based therapies. To this end, we have developed glucose-modified chlorins and bacteriochlorins featuring a reactive carboxylic acid linker for conjugation to targeting moieties. The photosensitizers were synthesized in relatively high yields from meso-tetra(p-aminophenyl)porphyrin, and resulted in neutral, hydrophilic chromophores with superb absorption profiles in the far-red and near-infrared portions of the electromagnetic spectrum. In addition, conjugation of these photosensitizers to a model nanoscaffold (crosslinked dextran-coated nanoparticles) demonstrated that the inclusion of hydrophilic sugar moieties increased the number of dyes that can be loaded while maintaining suspension stability. The described compounds are expected to be particularly useful in the synthesis of a number of targeted nanotherapeutic systems.
Restoration of breathing after opioid overdose and spinal cord injury using temporal interference stimulation (2021)

Respiratory insufficiency is a leading cause of death due to drug overdose or neuromuscular disease. We hypothesized that a stimulation paradigm using temporal interference (TI) could restore breathing in such conditions. Following opioid overdose in rats, two high frequency (5000 Hz and 5001 Hz), low amplitude waveforms delivered via intramuscular wires in the neck immediately activated the diaphragm and restored ventilation in phase with waveform offset (1 Hz or 60 breaths/min). Following cervical spinal cord injury (SCI), TI stimulation via dorsally placed epidural electrodes uni- or bilaterally activated the diaphragm depending on current and electrode position. In silico modeling indicated that an interferential signal in the ventral spinal cord predicted the evoked response (left versus right diaphragm) and current-ratio-based steering. We conclude that TI stimulation can activate spinal motor neurons after SCI and prevent fatal apnea during drug overdose by restoring ventilation with minimally invasive electrodes.
Multiomics reveal unique signatures of human epiploic adipose tissue related to systemic insulin resistance (2021)

Multi-omics epiAT signatures reflect systemic IR and obesity subphenotypes distinct from other fat depots. Our data suggest a previously unrecognised role of human epiploic fat in the context of obesity, impaired insulin sensitivity and related diseases.
Efficacy of PARP inhibition in Pde6a mutant mouse models for retinitis pigmentosa depends on the quality and composition of individual human mutations (2016)

Retinitis pigmentosa (RP), an inherited blinding disease, is caused by a variety of different mutations that affect retinal photoreceptor function and survival. So far there is neither effective treatment nor cure. We have previously shown that poly(ADP-ribose)polymerase (PARP) acts as a common and critical denominator of cell death in photoreceptors, qualifying it as a potential target for future therapeutic intervention. A significant fraction of RP-causing mutations affect the genes for the rod photoreceptor phosphodiesterase 6A (PDE6A) subunit, but it is not known whether they all engage the same death pathway. Analysing three homozygous point mutations (Pde6a R562W, D670G, and V685M) and one compound heterozygous Pde6a (V685M/R562W) mutation in mouse models that match human RP patients, we demonstrate excessive activation of PARP, which correlated in time with the progression of photoreceptor degeneration. The causal involvement of PARP activity in the neurodegenerative process was confirmed in organotypic retinal explant cultures treated with the PARP-selective inhibitor PJ34, using different treatment time-points and durations. Remarkably, the neuroprotective efficacy of PARP inhibition correlated inversely with the strength of the genetically induced insult, with the D670G mutant showing the best treatment effects. Our results highlight PARP as a target for neuroprotective interventions in RP caused by PDE6A mutations and are a first attempt towards personalized, genotype-matched therapy development for RP. In addition, for each of the different mutant situations, our work identifies windows of opportunity for an optimal treatment regimen for further in vivo experimentation and possibly clinical studies.
Interactions between Therapeutic Proteins and Acrylic Acid Leachable (2012)

Acrylic acid was detected to migrate from syringes (Vendor X) into a therapeutic protein solution (at a concentration around 5 μg/mL). In this study, we discovered that acrylic acid can modify proteins at three different sites: (1) the lysine side chain, 2) the N-terminus, and 3) the histidine side chain, by the Michael reaction. In this report, the direct interactions between acrylic acid leachable and a biopharmaceutical product were demonstrated and the reaction mechanism was proposed.
Thermally Stable AgPd@ZnO Bimetallic Alloy Nanoparticles for Ethanol Sensors with Long-Term Stability (2022)

Bimetallic alloy nanoparticles (NPs) typically provide some unique properties in gas sensing due to the synergistic effects that arise from the two distinct metals, especially selective catalytic oxidation of hazardous volatile organic compounds. However, their practical uses are being held back by the high catalyst cost and the deterioration of catalytic capabilities at elevated temperatures. In this work, extremely thermally stable ZnO-supported AgPd bimetallic alloy core–shell NPs were synthesized, demonstrating resistance to surface oxidation due to the synergistic effect of Ag and Pd atoms. The AgPdalloy@ZnO core–shell NPs outperform the pristine ZnO and Pd@ZnO NPs in ethanol sensing, with a response of 704.08 to 100 ppm ethanol at 300 °C. Besides, the sensor demonstrates excellent selectivity, anti-interfering response, repeatability, long-term stability, and humidity effect. The lattice mismatch, upshifts in the d-band center, and oxidation resistance behavior of AgPdalloy ameliorate their electronic structure, which enhances the catalytic properties and the gas sensing performances in AgPdalloy@ZnO NPs. Most importantly, compared to other noble metal NPs, Ag is very inexpensive and cost-effective, which is a great advantage from an economic perspective.
Mobilization of hematopoietic stem cells during homeostasis and after cytokine exposure (2003)

We created parabiotic mice, joining ROSA26 and PeP3b animals, to study the trafficking of hematopoietic stem cells (HSCs) from marrow to blood and their return to marrow. The transfer of HSCs was assayed by secondary marrow transplantation and was 1.0% to 2.5% after 3, 6, 8, and 12 weeks. Thus, HSC homeostasis is primarily maintained by the retention of stem cells derived from replication events within the marrow, not the homing and engraftment of HSCs from the circulation. Of interest, the phenotypes of marrow progenitors and granulocytes were similar to those for HSCs, implying that the marrow functions as an intact compartment where differentiating cells derive from endogenous HSC. In contrast, 50% of splenic granulocytes and progenitor cells derived from the parabiotic partner, suggesting splenic progenitor cells were in constant equilibrium with progenitors in blood. In additional studies, animals were exposed to granulocyte-colony-stimulating factor (G-CSF) and stem cell factor at days 17 to 20 of parabiosis and were studied 3 weeks later; 10.1% of marrow HSCs derived from the parabiotic partner. These data imply that HSCs, mobilized to the blood in response to cytokine exposure, are destined to later return to marrow, an observation that supports the concept that the mobilized peripheral blood stem cells used in clinical transplantation function physiologically.
Prune Belly Syndrome and Tracheo-esophageal Fistula in a Premature Neonate (2004)

Prune Belly Syndrome, also known as Eagle-Barrett syndrome, is a well known triad of abdominal muscle deficiency or hypoplasia, urinary tract anomalies, and bilateral cryptorchidism. 1 Tracheoesophageal fistula is a sporadically occurring defect estimated to occur in 1 out 4425 live births. 2 Only one case of Prune Belly Syndrome, tracheo-esophageal fistula associated with VATER syndrome, and urethral atresia occurring in the same individual has been reported. We present a unique case involving a 33 week fetus with bladder distention and bilateral hydroureteronephrosis diagnosed in utero who postnatally was diagnosed with Prune Belly Syndrome, tracheo-esophageal fistula, and urethral atresia.
Insight into Sulfur Reactions in Li–S Batteries (2014)

Understanding and controlling the sulfur reduction species (Li2Sx, 1 ≤ x ≤ 8) under realistic battery conditions are essential for the development of advanced practical Li-S cells that can reach their full theoretical capacity. However, it has been a great challenge to probe the sulfur reduction intermediates and products because of the lack of methods. This work employed various ex situ and in situ methods to study the mechanism of the Li-S redox reactions and the properties of Li2Sx and Li2S. Synchrotron high-energy X-ray diffraction analysis used to characterize dry powder deposits from lithium polysulfide solution suggests that the new crystallite phase may be lithium polysulfides. The formation of Li2S crystallites with a polyhedral structure was observed in cells with both the conventional (LiTFSI) electrolyte and polysulfide-based electrolyte. In addition, an in situ transmission electron microscopy experiment observed that the lithium diffusion to sulfur during discharge preferentially occurred at the sulfur surface and formed a solid Li2S crust. This may be the reason for the capacity fade in Li-S cells (as also suggested by EIS experiment in Supporting Information ). The results can be a guide for future studies and control of the sulfur species and meanwhile a baseline for approaching the theoretical capacity of the Li-S battery.