gebhart/patrepeval huggingface dataset:
Dextran-Coated Gold Nanoparticles for the Assessment of Antimicrobial Susceptibility (2008)

Bacteria rapidly evolve mechanisms to become resistant to antibiotics. Therefore, identifying an effective antibiotic or antibacterial agent and administering it at concentrations that will successfully prevent bacterial growth (antimicrobial susceptibility) is critical for health care decision making and vital for the battle against multi-drug-resistant bacteria. Currently, the determination of antimicrobial susceptibility requires at least 24 h. Herein, we describe a nanoparticle-based antimicrobial susceptibility assay based on the concanavalin A-induced clustering of dextran-coated gold nanoparticles, which sense the presence of available complex carbohydrates in bacterial suspension. Under conditions of bacterial growth inhibition, addition of concanavalin A results in the formation of extensive dextran gold nanoassemblies, which are facilitated by the presence of free carbohydrates in solution and result in large shifts in the surface plasmon band of the nanoparticles. Meanwhile, at conditions of increased bacterial growth, a decrease in the amount of free carbohydrates in solution will occur due to an increased carbohydrate uptake by the proliferating bacteria. This will result in a decrease in the size of the gold nanoparticle clusters and an increase in the number of nanoparticles that bind to bacterial surface carbohydrates, causing lower shifts in the plasmonic band. The gold nanoparticle-based assessment of antimicrobial susceptibility yields results within 3 h and can be used for the high-throughput screening of samples during epidemics and identification of potential antimicrobial agents to expedite clinical decision-making in point-of-care diagnostics.
Fructose effect to suppress hepatic glycogen degradation. (1987)

The effect of fructose on glycogen degradation was examined by measuring the flux of 14C from prelabeled glycogen in perfused rat livers. During 2-h refeeding of 24-h-fasted rats, newly synthesized hepatic glycogen was labeled by intraperitoneal injection of [U-14C] galactose (0.1 mg and 0.02 microCi/g of body weight). The livers of refed rats were then perfused in a nonrecirculating fashion for an initial 30 min with glucose alone (10 mM) for the following 60 min with glucose (10 mM) without (n = 5) or with fructose (1, 2, or 10 mM; n = 5 for each). When livers were exposed to fructose, release of label into the perfusate immediately declined and remained markedly suppressed through the end of perfusion (p less than 0.05). The suppression was dose-dependent; at steady state (50-70 min), label release was suppressed 45, 64, and 72% by 1, 2, and 10 mM fructose, respectively (p less than 0.0001). Suppression was not accompanied by significant changes in the activities of glycogen synthase or phosphorylase assessed in vitro. These results suggest the existence of allosteric inhibition of phosphorylase in the presence of fructose. Fructose 1-phosphate (Fru-1-P) accumulated in proportion to fructose (0.11 +/- 0.01 without fructose, 0.86 +/- 0.03, 1.81 +/- 0.18, and 8.23 +/- 0.60 mumol/g of liver with 1, 2, and 10 mM fructose, respectively; p less than 0.0001). Maximum inhibition of label release was 82%; the Fru-1-P concentration for half inhibition was 0.57 mumol/g of liver, well within the concentration of Fru-1-P attained during refeeding. We conclude that fructose enhances net glycogen accumulation in liver by suppressing glycogenolysis and that the suppression is presumably caused by allosteric inhibition of phosphorylase by Fru-1-P.
Control of extended high-voltage electric discharges in atmospheric air by UV KrF-laser radiation (2011)

Experiments in the commutation of extended (∼1-m long) high-voltage (up to 390 kV) electric discharges were carried out with the aid of 100-ns long UV pulses of the GARPUN KrF laser, in which we demonstrated a one-and-a-half-fold lengthening of the discharge gap broken down in the presence of laser illumination. Total control of discharge trajectory along the direction of the laser beam was observed for a radiation energy of ∼300 mJ (the corresponding intensity I = 5×108 W cm-2 and its attendant initial electron density Ne ∼ 1011 cm-3) and partial control for an energy of 40 mJ (I = 7×107 W cm-2, Ne ∼ 8×109 cm-3) with a 100% probability of breakdown. We discuss the advantages of employing a UV laser for active lightning protection in comparison with IR lasers and ultrashort-pulse laser systems.
Heuristic chemistry—a qualitative study on teaching domain-specific strategies for the six-electron case (2012)

We investigate the efficiency of domain-specific heuristic strategies in mastering and predicting pericyclic six-electron rearrangements. Based on recent research findings on these types of reactions a new concept has been developed that should help students identify and describe six-electron rearrangements more readily in complex molecules. The goal of this qualitative study with chemistry majors is to understand the way students cope with this new concept depending on their prior knowledge, and to reveal the merits and limitations of this approach. The results suggest that the use of domain-specific heuristic strategies provides the students with process-orientated thinking skills to identify six-electron rearrangements and to determine as well as predict reaction mechanisms and outcomes. The explicit emphasis on recurrent patterns and structure–property relationship fosters the conceptual thinking of the learner.
Aluminum Acetals in Organic Synthesis (2013)

Abstract Aluminum acetals are easily obtained from esters and lactones by reduction with aluminum hydrides. These thermally unstable tetrahedral intermediates have found applications in organic synthesis, with various methodologies taking advantage both of the stabilities of these aluminum species at low temperatures and of their tendencies to undergo rearrangement into the corresponding aldehydes. Efficient one‐pot transformations can be achieved from aluminum acetals under ionic and radical conditions. A comprehensive overview of the reactivity of these species, including the most recent advances in this field, is presented in this microreview.
Using dependent types and tactics to enable semantic optimization of language-integrated queries (2015)

Semantic optimization --- the use of data integrity constraints to optimize relational queries --- has been well studied but, owing to limitations in how SQL handles constraints, has not often been applied by mainstream RDBMSs. In a language-integrated query setting, however, the query provider is free to rewrite queries before they are executed on an RDBMS. We show, using Coq as our ambient language, how to use dependent types to represent a well known class of constraints --- embedded, implicational dependencies --- and how Coq tactics can be used to implement a particular kind of semantic optimization: tableaux minimization, which minimizes the number of joins required by a query.
Reaction of Octachlorodirhenate with a Redox-Active Tetrathiafulvalene Phosphine Ligand:  Spectroscopic, Magnetic, and Structural Characterization of the Unusual Paramagnetic Salt [ReCl<sub>2</sub>(<i>o</i>-P2)<sub>2</sub>][Re<sub>2</sub>Cl<sub>6</sub>(<i>o</i>-P2)] (<i>o</i>-P2 =<i>o</i>-{P(C<sub>6</sub>H<sub>5</sub>)<sub>2</sub>}<sub>2</sub>(CH<sub>3</sub>)<sub>2</sub>TTF) (1998)

Reaction of [(n-Bu)(4)N](2)[Re(2)Cl(8)] with the tetrathiafulvalene phosphine ligand o-{P(C(6)H(5))(2)}(2)(CH(3))(2)TTF (o-P2) in refluxing ethanol produces the mixed-nuclearity salt [ReCl(2)(o-P2)(2)][Re(2)Cl(6)(o-P2)] (1.2), composed of the mononuclear Re(III) complex (1) and the mixed-valence Re(II)-Re(III) dinuclear anion (2). The complex crystallizes as a CH(2)Cl(2) solvate in the triclinic space group P&onemacr;, a = 13.4559(1) Å, b = 20.4015(3) Å, c = 21.5538(1) Å, alpha = 88.261(1) degrees, beta = 72.987(1) degrees, gamma = 84.933(1) degrees, and Z = 2. The molecular cation consists of two trans o-P2 ligands in the equatorial plane and axial chloride ligands. The dinuclear anion adopts an eclipsed geometry with an unsymmetrical coordination environment for the two metal atoms; one Re(II) center is coordinated to a chelating o-P2 ligand and two chlorides while the other Re atom is coordinated to four chloride ligands. The dinuclear portion of the salt is a monoanion which leads to a formal bond order assignment of 3.5, based on the fact that the molecule possesses an Re(2)(5+) core. The salt was further characterized by infrared and electronic spectroscopies, electrochemistry, and variable temperature magnetic susceptibility; the presence of the individual ions in bulk samples was verified by positive and negative FAB mass spectrometry. Isolation of the two separate ions was achieved by treatment of the salt with Co(C(5)H(5))(2), which reduces the Re(III) cation to the Re(II) complex ReCl(2)(o-P2)(2) (3). This neutral compound was separated from the byproduct salt [Co(C(5)H(5))(2)][Re(2)Cl(6)(o-P2)] and reoxidized with CCl(4)/CH(2)Cl(2) or NOBF(4) to produce [ReCl(2)(o-P2)(2)][Cl] (1.[Cl]) and [ReCl(2)(o-P2)(2)][BF(4)] (1.[BF(4)]), respectively. Compounds 3, 1.[Cl], and 1.[BF(4)] were identified by a combination of infrared spectroscopy, mass spectrometry, and cyclic voltammetric measurements. Variable temperature dc susceptibility studies of [ReCl(2)(o-P2)(2)][Re(2)Cl(6)(o-P2)] (1.2) revealed classical Curie paramagnetic behavior (with a Curie constant equal to 0.395) and a large temperature independent paramagnetic contribution (chi(TIP) = 9.64 x 10(-)(3) emu/mol). The EPR spectrum of 1.2 consists of a broad, complex signal due to hyperfine interactions to both isotopes (185,187)Re (I = (5)/(2)) and (31)P (I = (1)/(2)) which is typical for paramagnetic metal-metal bonded dirhenium phosphine compounds.
Upper gastrointestinal cancer (2015)

Abstract Outlines the epidemiology, aetiology, pathology and metastatic patterns of the disease. Guides to symptoms,diagnosis, staging and planning therapy. Outlines surgical, radiotherapy and chemotherapy options for both early stage and metastatic disease.
Zavegepant nasal spray for the acute treatment of migraine: A Phase 2/3 double‐blind, randomized, placebo‐controlled, dose‐ranging trial (2022)

Zavegepant nasal spray, in single doses of 10 or 20 mg, was effective for the acute treatment of migraine, with a favorable safety profile. Additional research is needed to confirm its potential as a nonoral medication for the acute treatment of migraine.
Suppl Figure 2 from HSP70 Inhibition Limits FAK-Dependent Invasion and Enhances the Response to Melanoma Treatment with BRAF Inhibitors (2023)

&lt;p&gt;Kaplan-Meier analysis of data from PrognoScan on the level of HSP70 (A1B) mRNA and survival.&lt;/p&gt;
Highly efficient and fabrication-tolerant InP polarization rotator-splitter (2019)

A highly efficient passive polarization rotator and splitter based on mode-evolution is demonstrated. The device is fabricated on InP substrate with a single etch-step and uses an adiabatic mode-converter and an asymmetric Y-coupler. Despite its simple fabrication process, the device shows a polarization extinction ratio (PER) better than 19 dB over 1520 nm to 1620 nm, thus covering both C- and L-band. Peak values of 24 dB for both TE and TM polarizations are measured. Its fabrication tolerance is large, so that even under a width variation of +/- 200 nm the PER remains above 17 dB over the entire C- and L-band.
Folding a Paper Strip to Minimize Thickness (2014)

In this paper, we study how to fold a specified origami crease pattern in order to minimize the impact of paper thickness. Specifically, origami designs are often expressed by a mountain-valley pattern (plane graph of creases with relative fold orientations), but in general this specification is consistent with exponentially many possible folded states. We analyze the complexity of finding the best consistent folded state according to two metrics: minimizing the total number of layers in the folded state (so that a "flat folding" is indeed close to flat), and minimizing the total amount of paper required to execute the folding (where "thicker" creases consume more paper). We prove both problems strongly NP-complete even for 1D folding. On the other hand, we prove the first problem fixed-parameter tractable in 1D with respect to the number of layers.
Table S4 from Complete Loss of PTEN Protein Expression Correlates with Shorter Time to Brain Metastasis and Survival in Stage IIIB/C Melanoma Patients with &lt;i&gt;BRAF&lt;/i&gt;&lt;sup&gt;V600&lt;/sup&gt; Mutations (2023)

&lt;p&gt;Table S4. Clinical outcomes by PTEN status in patients without BRAF V600 or NRAS mutations&lt;/p&gt;
Reaction engineering for materials processing in space: Reduction of ilmenite by hydrogen and carbon monoxide (1991)

Oxygen is a consumable material which needs to be produced continuously in most space missions. Its use for propulsion as well as life support makes oxygen one of the largest volume chemicals to be produced in space. Production of oxygen from lunar materials is of particular interest and is very attractive possibility. The kinetics and mechanism of reduction of ilmenite by carbon monoxide and hydrogen at 800 to 1100 C were investigated. The temporal profiles of conversion for carbon monoxide have a sigmoidal shape and indicate the presence of three different stages (induction, acceleration, and deceleration) during the reduction reaction. The apparent activation energy decreases from 18 kcal/mole at 10 percent conversion to 10 kcal/mole at 50 percent conversion. The reaction is first order with respect to carbon monoxide under the experimental conditions studied. Both SEM and EDX analysis show that the diffusion of Fe product away from the reaction front and through the TiO2 phase, followed by the nucleation and growth of a separate Fe phase are important steps affecting the process kinetics. The results from hydrogen reduction show that the mechanism of ilmenite reduction by hydrogen is similar to that by carbon monoxide. However, the titanium dioxide can be further reduced by hydrogen at 800 to 1000 C. The detailed comparison and theoretical modeling of both reduction processes is presented.
Depth estimation using multi-wavelet analysis based stereo vision approach (2007)

The problem of dimensional defects in aluminum die- casting is widespread throughout the foundry industry and their detection is of paramount importance in maintaining product quality. Due to the unpredictable factory environment and metallic, with highly reflective, nature of aluminum die-castings, it is extremely hard to estimate true dimensionality of the die-casting, autonomously. In this work, we propose a novel robust 3D reconstruction algorithm capable of reconstructing dimensionally accurate 3D depth models of the aluminum die-castings. The developed system is very simple and cost effective as it consists of only a stereo cameras pair and a simple fluorescent light. The developed system is capable of estimating surface depths within the tolerance of 1.5 mm. Moreover, the system is invariant to illuminative variations and orientation of the objects in the input image space, which makes the developed system highly robust. Due to its hardware simplicity and robustness, it can be implemented in different factory environments without a significant change in the setup.
Axilog: language support for approximate hardware design (2015)

Relaxing the traditional abstraction of near-perfect accuracy in hardware design can lead to significant gains in energy efficiency, area, and performance. To exploit this opportunity, there is a need for design abstractions that can systematically incorporate approximation in hardware design. We introduce Axilog, a set of language annotations, that provides the necessary syntax and semantics for approximate hardware design and reuse in Verilog. Axilog enables the designer to relax the accuracy requirements in certain parts of the design, while keeping the critical parts strictly precise. Axilog is coupled with a Relaxability Inference Analysis that automatically infers the relaxable gates and connections from the designer's annotations. The analysis provides formal safety guarantees that approximation will only affect the parts that the designer intended to approximate, referred to as relaxable elements. Finally, the paper describes a synthesis flow that approximates only the relaxable elements. Axilog enables applying approximation in the synthesis process while abstracting away the details of approximate synthesis from the designer. We evaluate Axilog, its analysis, and the synthesis flow using a diverse set of benchmark designs. The results show that the intuitive nature of the language extensions coupled with the automated analysis enables safe approximation of designs even with thousands of lines of code. Applying our approximate synthesis flow to these designs yields, on average, 54% energy savings and 1.9X area reduction with 10% output quality loss.
Combination treatment with photodynamic therapy and curcumin induces mitochondria-dependent apoptosis in AMC-HN3 cells (2012)

Photodynamic therapy (PDT) is a treatment for the selective destruction of cancerous and non-neoplastic cells that involves the simultaneous presence of light, oxygen and a light-activatable chemical known as a photosensitizer. Curcumin is one of the most extensively investigated phytochemicals with chemopreventive potential and antitumor effects. In this study, the effect of a combination of PDT and curcumin on apoptotic cell death in AMC-HN3 cells and the molecular mechanism underlying apoptosis was examined to confirm the interaction between photofrin-induced PDT and curcumin during combined mortality. The combination treatment with curcumin and PDT inhibited approximately 70% of the cell viability after PDT, whereas the PDT and curcumin only groups showed a 50 and 10% decrease in cell viability, respectively. In addition, the combination treatment increased the apoptotic events, such as nuclear fragmentation and nuclear condensation. This combination group showed an increase in ROS generation that was higher than that observed after each single treatment. Compared to the single agent treatments, the combination therapy induced the enhanced loss of ∆ψm. Furthermore, the cytosolic levels of cytochrome c were significantly elevated in the combination group. Caspases-9, -3 and PARP, which are apoptosis-related proteins induced by mitochondrial activation, were upregulated remarkably by the combination treatment. When co-treated with glutathione, a singlet oxygen quencher, the combination treatment-induced synergistic cytotoxic and apoptotic effects, enhanced the generation of ROS and suppressed the upregulation of caspase-3 and PARP. These results suggest that the combination modality with PDT and curcumin have a better treatment effect in vitro. The induction of mitochondrial-dependent apoptosis due to the increased generation of ROS may be involved in this combination treatment.
Complex Management Decisions in a Professional Athlete With Recurrent Pericarditis (2022)

A 32-year-old professional athlete developed chronic recurrent pericarditis despite standard medical therapy. Etiology included postpericardiotomy syndrome, viral, or COVID-19 vaccine related, all potentially exacerbated by intense exercise. Treatment and return-to-play decisions were complicated by potential side-effect profile of therapies and ability to limit exercise as a professional athlete. (<b>Level of Difficulty: Intermediate.</b>).
Author response: Chemical activation of the mechanotransduction channel Piezo1 (2015)

Within our bodies, cells and tissues are constantly being pushed and pulled by their surrounding environment. These mechanical forces are then transformed into electrical or chemical signals by cells. This process is crucial for many biological structures, such as blood vessels, to develop correctly, and is also a key part of our senses of touch and hearing. In 2010, researchers discovered a group of ion channels—proteins embedded in the membrane that surrounds a cell—that open up when a force is applied and allow ions such as calcium, potassium, and sodium to flow. This movement of ions generates the electrical response of the cell to the applied force. However, not much is known about how these ‘Piezo’ ion channels work. To investigate this, it is important to be able to precisely control how and when the Piezo channels open. Many other ion channels are studied by using small chemical compounds to activate them, but there were none that were known to act on Piezo proteins. Syeda et al.—including some of the researchers involved in the 2010 work—screened over three million compounds for their ability to cause calcium ions to flow into human cells to try to identify chemicals that activate the Piezo channels. This revealed one promising candidate named Yoda1, which specifically activated Piezo1: a Piezo protein that had previously been linked to a role in blood vessel development in embryos. To investigate how Yoda1 activates Piezo1, Syeda et al. placed Piezo1 in an artificial cell membrane that did not contain any other cellular components. When Yoda1 was added to this set up, the Piezo1 channels opened up. This suggests that Piezo1 and Yoda1 interact in a manner that does not require additional cellular components other than a cell membrane. Separate work by Cahalan, Lukacs et al. uses Yoda1 to reveal that Piezo1 helps to control the volume of red blood cells, showing that in the future, Yoda1 could be valuable in research that investigates the roles of Piezo1.
Zero Emissions Coal Syngas Oxygen Turbo Machinery (2011)

Siemens Energy, Inc. (formerly Siemens Westinghouse Power Corporation) worked with Clean Energy Systems and Florida Turbine Technologies to demonstrate the commercial feasibility of advanced turbines for oxy-fuel based power systems that discharge negligible CO{sub 2} into the atmosphere. The approach builds upon ultra supercritical steam turbine and advanced gas turbine technology with the goal of attaining plant efficiencies above 50% in the 2015 timeframe. Conceptual designs were developed for baseline, near term, and long term oxy-fuel turbine cycles, representing commercial introductions of increasingly advanced thermal conditions and increasing exposure to steam-CO{sub 2} mixtures. An economic analysis and market demand study was performed by Science Applications International Corp. (SAIC), and indicated that long-term oxy-fuel turbine cycles start to look attractive in 2025 when the CO{sub 2} tax is assumed to reach $40/ ton, and by 2030 it has a clear advantage over both IGCC with sequestration and pulverized coal with sequestration. A separate risk analysis of the oxy-fuel combustor, HP turbine, re-heater, and IP turbine of the long-term cycle identified and categorized risks and proposed mitigation measures. In 2007 the program began to focus on a potential oxy-fuel turbine power generation demonstration project in the 2012 -13 time period while still maintaining a link to the requirements of the long-term oxy-syngas cycle. The SGT-900 turbine was identified as the best fit for modification into an intermediate pressure turbine (IPT) for this application. The base metals, bond coats, thermal barrier coatings (TBCs), and rotor materials used in the SGT-900 were tested for their ability to operate in the steam- CO{sub 2} environment of the oxy-fuel OFT-900. Test results indicated that these same materials would operate satisfactorily, and the plan, is to use SGT-900materials for the OFT-900. Follow-on programs for corrosion testing and evaluation of crack growth rates in oxy-fuel environments have been proposed to build on these results and provide quantifiable assessments of the effects of oxy-fuel environments on the service lives of turbine components.
[Use of percutaneous coronary vessel interventions should be increased. 400 interventions per year is a minimum capacity of decentralized services]. (1999)

[Use of percutaneous coronary vessel interventions should be increased.400 interventions per year is a minimum capacity of decentralizedservices]