gebhart/patrepeval huggingface dataset:
Top‐down influences on lexical selection during spoken word production: A 4T fMRI investigation of refractory effects in picture naming (2006)

Spoken word production is assumed to involve stages of processing in which activation spreads through layers of units comprising lexical-conceptual knowledge and their corresponding phonological word forms. Using high-field (4T) functional magnetic resonance imaging (fMRI), we assessed whether the relationship between these stages is strictly serial or involves cascaded-interactive processing, and whether central (decision/control) processing mechanisms are involved in lexical selection. Participants performed the competitor priming paradigm in which distractor words, named from a definition and semantically related to a subsequently presented target picture, slow picture-naming latency compared to that with unrelated words. The paradigm intersperses two trials between the definition and the picture to be named, temporally separating activation in the word perception and production networks. Priming semantic competitors of target picture names significantly increased activation in the left posterior temporal cortex, and to a lesser extent the left middle temporal cortex, consistent with the predictions of cascaded-interactive models of lexical access. In addition, extensive activation was detected in the anterior cingulate and pars orbitalis of the inferior frontal gyrus. The findings indicate that lexical selection during competitor priming is biased by top-down mechanisms to reverse associations between primed distractor words and target pictures to select words that meet the current goal of speech.
Characterization of two types of calcium channels in mouse neuroblastoma cells. (1987)

1. Two types of voltage-sensitive calcium channels were identified and studied in the neuroblastoma cell line N1E-115. Calcium channel currents as carried by Ba2+ (50 mM) were recorded using the whole-cell variation of the patch-electrode voltage-clamp technique. 2. A transient (type I) inward Ba2+ current was evoked by a step depolarization from a holding potential of -80 mV to potentials more positive than -50 mV. The current amplitude became maximum around -20 mV. 3. A depolarization to potentials more positive than -20 mV evoked a long-lasting (type II) component of the inward Ba2+ current. This component reached its maximum around +10 mV and did not inactivate during a prolonged depolarizing pulse lasting 400 ms. 4. When preceded by a 5 s conditioning pulse to -30 mV, step depolarization failed to evoke a transient current due to inactivation. However, it induced a long-lasting current. 5. A transient current isolated as the component sensitive to conditioning depolarization became faster in its time course and smaller in its amplitude with membrane depolarization. The current direction was still inward at +60 mV. 6. From the differential voltage sensitivity and the independent channel activity described above, calcium channels responsible for the transient current (type I channel) and those responsible for the long-lasting current (type II channel) were considered to be two different entities. 7. Cd2+ preferentially blocked type II channels, whereas La3+ was a highly potent blocker for both types of calcium channels. 8. The relative potency for block by polyvalent cations was as follows (apparent dissociation constant in microM): La3+, 1.5 much greater than Ni2+, 47 greater than Cd2+, 160 = Co2+, 160 for type I channels, and La3+, 0.9 greater than Cd2+, 7.0 much greater than Ni2+, 280 greater than Co2+, 560 for type II channels. 9. The two types of calcium channels were equally sensitive to the temperature. The current amplitude was reduced by cooling below 30 degrees C. The temperature coefficient (Q10) value was estimated to be 3.0 between 20 and 30 degrees C, and 15.0 below 20 degrees C. Above 30 degrees C, warming reduced the amplitude slightly. 10. External application of dibutyryl adenosine 3',5'-phosphate (dibutyryl cyclic AMP) (1 mM) caused an increase in the amplitude of the type II current by 30-50%, while failing to enhance the type I component.(ABSTRACT TRUNCATED AT 400 WORDS)
Surface potential analyses of single-walled carbon nanotube/metal interfaces (2007)

The band structure of a single-walled carbon nanotube (SWNT)/metal system, including a shift in the vacuum level which appears at the SWNT/metal interface, was characterized by using a Kelvin-probe force microscopy method. In the SWNT/gold system, the shift (Δ) of the vacuum level was observed to be +5.2meV, which is one order of magnitude smaller than previously observed. When we carried out carrier doping of the SWNTs, the observed Δ was downshifted from +5.2to−52meV, which introduced some upshift in the band structure of the doped SWNTs. This change induced easier hole injection, which coincides with the field effect transistor characteristics of undoped and doped SWNT transistors. A similar analysis was also carried out for a SWNT/ferromagnet system.
Carbonate and Bicarbonate Ion Transport in Alkaline Anion Exchange Membranes (2012)

Abstract not Available.
Using natural variations among shikimate dehydrogenases to study modes of substrate selectivity (2008)

Poster Sessions is grown on acetate, IDH is in its inactive phosphorylated form, thus inhibiting Krebs' cycle. Alternatively, a change of carbon source to glucose or pyruvate results in the activation of IDH by dephosphorylation, and the initiation of Krebs' cycle. The function of AceK and its involvement in the regulation of Krebs' cycle and the glyoxylate bypass is well-characterized, but its structural and mechanistic qualities have remained relatively unknown. The determination of the crystal structure could provide confirmation of the function of AceK by identifying the various kinase, phosphatase and ATPase domains and insights into the coordination of the kinase and phosphatase activity of AceK. Of note, it is currently unknown how, or if at all, the active site changes conformation as it switches between kinase and phosphatase activity. Three Acek crystal forms were obtained and SAD datasets were collected at CHESS and BNL synchrotron source. The AceK structure is determined at 2.6 . The overall AceK structure displays a typical eukaryotic kinase folding.
Subcellular Localization of Alkaloids and Dopamine in Different Vacuolar Compartments of <i>Papaver bracteatum</i> (1986)

Fractionation of Papaver bracteatum Arya II Lindl. latex on Renografin step gradients revealed that 43% of the dopamine was compartmentalized along with alpha-mannosidase (40%) in vacuoles sedimenting in the 2% fraction. Twenty-two percent of the dopamine was in the supernatant, but a corresponding amount (18%) of alpha-mannosidase was also present suggesting vacuole breakage during isolation. By subcellular fractionation of protoplasts from cultured P. bracteatum cells, the 1,000g sedimenting organelles have been identified as the major site of accumulation of the morphinan alkaloid, thebaine (99+/-0.8%), and the benzophenanthridine alkaloid, sanguinarine (96+/-3%). Although the 1,000g pellet also contained 33+/-4% of the total alkaloid precursor, dopamine, and half of the total vacuolar marker enzyme, alpha-mannosidase, 62+/-10% of the amine was localized in the 100,000g supernatant. A differential distribution of the alkaloids was discovered upon resolution of the lysed protoplasts on Renografin step gradients. Over 40% of the dopamine was in the supernatant with 15% in a 2% Renografin band. The remainder was evenly distributed in denser fractions of the gradient. The 4 to 8% interface, previously found to contain the largest amount of thebaine and small amounts of sanguinarine and dopamine, has been shown to be enriched in vacuoles by electron microscopy. Using a histofluorescence method, dopamine compartmentation in vacuoles of intact cultured cells was corroborated. In summary, dopamine, sanguinarine, and thebaine occur in vacuoles of different densities. A large fraction of the total dopamine in cultured cells was found in the 100,000g supernatant along with 37% of the alpha-mannosidase suggesting that the amine may be sequestered in more fragile vacuoles than the alkaloids. The possibility that some dopamine may be cytosolic cannot be ruled out.
Planar Magnetic Shielding for Use With Electromagnetic Tracking Systems (2014)

This paper evaluates the use of planar magnetic shielding with electromagnetic (EM) tracking systems to prevent field distortion from ferromagnetic objects below a magnetic-field transmitter. A comparison of the shielding performance of MuMetal, ferrite, aluminum, and steel is presented over a frequency range of 1 Hz to 1 MHz. Both simulation and experimental results show the merits of each shield material. MuMetal and ferrite were found to give excellent shielding performance over a wide frequency range. The use of a ferrite and MuMetal shield is also demonstrated in a full 5 degree of freedom EM tracking system and is shown to successfully operate with position errors of 1.8 and 2.3 mm, respectively, in a volume of <inline-formula xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink"> <tex-math notation="LaTeX">$25~{\rm cm}\times 25~{\rm cm} \times 25$ </tex-math></inline-formula> cm. This is compared with a mean position error 67.3 mm without shielding. The orientation error for each shield was found to be 1.9° and 2.1° for the ferrite and MuMetal, respectively, in comparison with an error of 115.1° without shielding.
Living Related Kidney Donors: Historical and practice perspectives. (1992)

A kidney transplant is the treatment of choice for suitable patients with end-stage renal disease. The living related kidney donor represents an important source of kidneys because graft survival is much better and there is a critical shortage of organ donors. This article reviews the risks to the donor and the means by which these individuals are assessed in order to minimize the risk.
Sequence and exon-intron organization of the DNA encoding the alpha I domain of human spectrin. Application to the study of mutations causing hereditary elliptocytosis. (1989)

We have determined the exon-intron organization and the nucleotide sequence of the exons and their flanking intronic DNA in cloned genomic DNA that encodes the first 526 amino acids of the alpha I domain of the human red cell spectrin polypeptide chain. From the gene sequence we designed oligonucleotide primers to use in the polymerase chain reaction technique to amplify the appropriate exons in DNA from individuals with three variants of hereditary elliptocytosis characterized by the presence of abnormal alpha I spectrin peptides, 46-50 and 65-68 kD in size, in partial tryptic digests of spectrin. The alpha I/68-kD abnormality resulted from a duplication of leucine codon 148 in exon 4: TTG-CTG to TTG-TTG-CTG. The alpha I/50a defect was associated in different individuals with two separate single base changes in exon 6: CTG to CCG (leucine to proline) encoding residue 254, and TCC to CCC (serine to proline) encoding residue 255. In another individual with the alpha I/50a polypeptide defect, the nucleotide sequence encoding amino acid residues 221 through 264 was normal. The alpha I/50b abnormality resulted from a single base change of CAG (glutamine) to CCG (proline) encoding residue 465 in exon 11 in two unrelated individuals. In a third individual with alpha I/50b-kD hereditary elliptocytosis, the entire exon encoding residues 445 through 490 was normal. The relationship of the alpha I domain polypeptide structure to these mutations and the organization of the gene is discussed.
Software adaptation patterns for service-oriented architectures (2010)

This paper describes the concept of software adaptation patterns and how they can be used in software adaptation of service-oriented architectures. The patterns are described in terms of a three-layer architecture for self-management. A software adaptation pattern defines how a set of components that make up an architecture pattern dynamically cooperate to change the software configuration to a new configuration. In our approach, adaptation connectors are introduced to encapsulate adaptation state machine models so that the adaptation patterns can be more reusable. A change management model for dynamically evolving service-oriented applications is also described with a case study.
Methyl 4-ethoxy-2-methyl-2<i>H</i>-1,2-benzothiazine-3-carboxylate 1,1-dioxide (2008)

In the crystal structure of the title compound, C13H15NO5S, the mol­ecules exhibit weak S=O⋯H—C and C=O⋯H—C inter­molecular inter­actions and arrange themselves into centrosymmetric dimers by means of π–π inter­actions (ring centroids are separated by 3.619 Å, while the closest C⋯C contacts are 3.514 Å). 1,2-Benzothia­zines of this kind have a range of biological activities and are used as medicines in the treatment of inflammation and rheumatoid arthritis.
Analysis of Optimum Heterodyne Receivers for Coherent Lidar Applications (2002)

A full analysis of the combined effects of all the noise sources of optical heterodyne receiver and the interaction between the competing control parameters of the receiver detector and pre-amplifier will be presented. This analysis provides the mean for true optimization of the coherent lidar receiver. The significance of the optimization of heterodyne receiver is shown for 2-micron coherent lidar.
ChemInform Abstract: Platinum‐Catalyzed Intramolecular Hydroarylation of Allenyl Arenes: Efficient Synthesis of 1,4‐Dihydronaphthalenes. (2010)

Abstract The method allows the preparation of a broad spectrum of synthetically and biologically important title compounds under slightly modified conditions.
PRETRANSPLANT CD4 HELPER FUNCTION AND INTERLEUKIN 10 RESPONSE PREDICT RISK OF ACUTE KIDNEY GRAFT REJECTION1 (1996)

In a prospective study of 80 patients, we investigated the association of acute kidney graft rejection with pretransplant T helper/suppressor activity, B-cell responses, and in vitro cytokine secretion. Patients' CD4+ or CD8+ T cells were cocultured with control B cells and pokeweed mitogen for 6 days. SAC I was used for T cell- and monocyte-independent B-cell stimulation and pokeweed mitogen was used for T cell-dependent B-cell stimulation. B-cell differentiation was assessed in a reverse hemolytic plaque assay. Cytokine responses of T cells (interleukin [IL]-2, IL-10, gamma-interferon) and B cells/monocytes (IL-6, IL-8, tumor necrosis factor-alpha, granulocyte-macrophage colony-stimulating factor) were determined in culture supernatants using ELISA. Subsets of CD4+ T cells, CD8+ T cells, and B cells were assessed by flow cytometry. None of 12 patients with pretransplant CD4 helper defects (CD4 helper activity < 10%) had acute rejection episodes, in contrast to 32 of 68 (47%) patients with normal pretransplant CD4 helper function (P = 0.001). Patients with pretransplant CD4 helper defects also had better 1-year graft function than patients without CD4 helper defects (serum creatinine 1.2 +/- 0.1 mg/dl and 1.7 +/- 0.1 mg/dl, respectively, P < 0.05). Pretransplant IL-10 responses were significantly associated with the occurrence of acute rejection episodes (P = 0.001) and impaired 1-year graft function (P < 0.001). All 14 patients with low pretransplant IL-10 responses (< 100 pg/ml) had 1-year serum creatinine values of < 1.5 mg/dl. Pretransplant B-cell defects and B cell/monocyte-derived cytokine secretion were not related to the incidence of graft rejection or infectious complications. Pretransplant CD8 suppressor-effector (CD11b+), cell counts were significantly associated with the occurrence of infections (P < 0.05). These results show that pretransplant CD4 helper defects and low IL-10 responses predict a low risk of graft rejection, whereas Th1 (IL-2, gamma-interferon) and B-cell/monocyte responses are not of predictive value.
Strategy of Simian Virus 40 (1971)

This chapter contains section titled: Metabolic Changes Induced By Sv40 Maintenance of the Sv40 Genome in Transformed Cells Tumorigenicity of Sv40-Transformed Mouse Cells Conclusions References Discussion Infectiv Sv40 Dna Virus Production After Cell Fusion Spontaneous Virus Production and Permissiveness References
Rare Variants in Calcium Homeostasis Modulator 1 (CALHM1) Found in Early Onset Alzheimer’s Disease Patients Alter Calcium Homeostasis (2013)

Calcium signaling in the brain is fundamental to the learning and memory process and there is evidence to suggest that its dysfunction is involved in the pathological pathways underlying Alzheimer's disease (AD). Recently, the calcium hypothesis of AD has received support with the identification of the non-selective Ca(2+)-permeable channel CALHM1. A genetic polymorphism (p. P86L) in CALHM1 reduces plasma membrane Ca(2+) permeability and is associated with an earlier age-at-onset of AD. To investigate the role of CALHM1 variants in early-onset AD (EOAD), we sequenced all CALHM1 coding regions in three independent series comprising 284 EOAD patients and 326 controls. Two missense mutations in patients (p.G330D and p.R154H) and one (p.A213T) in a control individual were identified. Calcium imaging analyses revealed that while the mutation found in a control (p.A213T) behaved as wild-type CALHM1 (CALHM1-WT), a complete abolishment of the Ca(2+) influx was associated with the mutations found in EOAD patients (p.G330D and p.R154H). Notably, the previously reported p. P86L mutation was associated with an intermediate Ca(2+) influx between the CALHM1-WT and the p.G330D and p.R154H mutations. Since neither expression of wild-type nor mutant CALHM1 affected amyloid ß-peptide (Aß) production or Aß-mediated cellular toxicity, we conclude that rare genetic variants in CALHM1 lead to Ca(2+) dysregulation and may contribute to the risk of EOAD through a mechanism independent from the classical Aß cascade.
Synthesis of Highly Functionalized Poly(alkyl cyanoacrylate) Nanoparticles by Means of Click Chemistry (2008)

A general methodology was proposed to prepare highly functionalized poly(alkyl cyanoacrylate) nanoparticles by means of Huisgen 1,3-dipolar cyclo-addition, the so-called click chemistry. To achieve this goal, different protocols were investigated to obtain azidopoly(ethylene glycol) cyanoacetate of variable molar mass, followed by a Knoevenagel condensation−Michael addition reaction with hexadecyl cyanoacetate to produce a poly[(hexadecyl cyanoacrylate)-co-azidopoly(ethylene glycol) cyanoacrylate] (P(HDCA-co-N3PEGCA)) copolymer, displaying azide functionalities at the extremity of the PEG chains. As a proof of concept, model alkynes were quantitatively coupled either to the P(HDCA-co-N3PEGCA) copolymers in homogeneous medium followed by self-assembly in aqueous solution or directly at the surface of the preformed P(HDCA-co-N3PEGCA) nanoparticles in aqueous dispersed medium, both yielding highly functionalized nanoparticles. This versatile approach, using alkyl cyanoacrylate derivatives, opened the door to ligand-functionalized and biodegradable nanoparticles with “stealth” properties for biomedical applications.
Associations between viral infection and respiratory disease in young beef bulls (1988)

Blood samples were taken from bull calves at two Meat and Livestock Commission performance testing centres, just after weaning at six months of age and at six weekly intervals until the end of the performance test seven months later. Sera were assayed by specific ELISAS for antibodies to bovine herpes virus 1 (BHV1), respiratory syncytial virus, parainfluenza 3 (Pi3) and adenoviruses A and B. Seroconversions between each sampling were related to the occurrence of clinical respiratory disease using chi-squared (chi 2) and relative risk (RR) analyses. In 294 bulls there were 123 cases of respiratory disease. Seroconversion to bovine respiratory syncytial virus (RR = 4.7, chi 2 = 96.3, P less than 0.001) and adenovirus A (RR = 1.8, chi 2 = 8.9, P less than 0.001) and adenovirus B (RR = 1.9, chi 2 = 5.6, P less than 0.05) were significantly associated with clinical respiratory disease. There was evidence that prior exposure to respiratory syncytial virus (RR = 0.4, chi 2 = 9.8, P less than 0.01) Pi3 (RR = 0.4, chi 2 = 12.8, P less than 0.01) and adenovirus A (RR = 0.7, chi 2 = 7.5, P less than 0.01) conferred some protection against respiratory disease after arrival at the centre. It is concluded that vaccination before weaning, at least against bovine respiratory syncytial virus, would be beneficial.
Target classification near complex interfaces using time-frequency filters (2002)

This paper presents a method for target recognition and classification in a shallow water environment. It is based on time-frequency filtering matched to a free field reference target response. The decision strategy lies on the comparison of the reference and the filter output signal. The method is applied to an experimental data base containing target acoustic responses measured in a tank for typical configurations (free field, semi-infinite space and waveguide). First, the recognition of a spherical shell is carried out. The obtained rate of recognition and confusion are more than encouraging. Then, a classification procedure is conducted and a degradation of the mean performances is to be noted in the more general case. However, the classification of 3D targets independently of their attitude gives quite satisfactory results.
High‐Resolution Nanoimprinting with a Robust and Reusable Polymer Mold (2007)

Abstract High temperature nanoimprinting of viscous polymers which are glassy at room temperature is usually performed using brittle and expensive molds made of inorganic materials. As a replacement, soft molds made of plastics or elastomers have been used because of their low cost and ease of fabrication. However, the deformation of polymer molds under pressure remains a major issue which limits their resolution in high temperature nanoimprinting. Moreover, the replicated structures are often broken or lack definition due to sticking of the embossed polymer to the mold. We report a method for imprinting fine, densely packed nanostructures down to 12 nm into a wide range of technologically important polymers using a flexible and robust mold made from ethylene(tetrafluoroethylene) (ETFE). The high resolution achieved is due to the mold's mechanical stability and resistance to distortion at high pressures and high temperatures. The flexibility and low surface energy of ETFE provide a clean mold release without fracture or deformation of the embossed structures. Multiple imprinting and patterning on large areas is also made possible because of the good conformal contact and low‐adhesion of the ETFE mold. Finally, this simple and inexpensive method allows reproduction of the stamps from one single master, thus providing an economical alternative to expensive and brittle inorganic materials.
<i>nlz</i> Gene family is required for hindbrain patterning in the zebrafish (2004)

This study describes the conserved nlz gene family whose members encode unusual zinc finger proteins. In the zebrafish neurectoderm, both nlz1 and the newly isolated nlz2 are expressed in the presumptive hindbrain and midbrain/hindbrain boundary, where expression of nlz1 is dependent on pax2a. In addition, nlz2 is uniquely expressed more anteriorly, in the presumptive midbrain and diencephalon. Overexpression of Nlz proteins during gastrula stages inhibits hindbrain development. In particular, ectopically expressed Nlz1 inhibits formation of future rhombomeres 2 and 3 (r2, r3), whereas neighboring r1 and r4 are not affected. Conversely, simultaneous reduction of Nlz1 and Nlz2 protein function by expression of antisense morpholino-modified oligomers leads to expansion of future r3 and r5, with associated loss of r4. These data indicate that one function of the nlz gene family is to specify or maintain r4 identity, and to limit r3 and r5 during hindbrain formation.