gebhart/patrepeval huggingface dataset:
Control of Type I Interferon-induced Cell Death by Orai1-mediated Calcium Entry in T Cells (2011)

Store-operated Ca(2+) entry (SOCE) is an essential process in T cell activation. SOCE is controlled by the Ca(2+) release-activated Ca(2+) (CRAC) channel encoded by the gene Orai1 that is expressed on the plasma membrane and activated by STIM1 when ER Ca(2+) stores are depleted. Our earlier work showed that a somatic T-cell line Jurkat mutant H123 bearing a defect in Ca(2+) signaling was susceptible to the apoptotic effects of type I interferons (IFN-α/β). The nature of the mutation and whether this mutation was linked to IFN-α/β apoptotic susceptibility was unknown. Here we show that H123 cells lacked Orai1 and exhibit reduced STIM1 protein. Reconstitution of both Orai1 and STIM1 in H123 cells rescued SOCE in response to thapsigargin and ionomycin and abrogated IFN-α/β-induced apoptosis. Reciprocally, overexpression of the dominant negative Orai1-E106A in either parental Jurkat cells or an unrelated human T cell line (CEM391) inhibited SOCE and led to sensitization to IFN-α/β-induced apoptosis. Furthermore, we showed that the Ca(2+) response pathway antagonized the IFN-α/β -induced transcriptional responses; in the absence of SOCE, this negative regulatory effect was lost. However, the inhibitory effect of Ca(2+) on type I IFN-induced gene transcription was diminished by pharmacological inhibition of NF-κB in cells with intact SOCE. Our findings reveal an unexpected and novel regulatory crosstalk mechanism between type I IFNs and store-operated Ca(2+) signaling pathways mediated at least in part by NF-κB activity with significant clinical implications to both viral and tumor immunology.
The Structure of the Polymers of α-Haloacrylates (1953)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTThe Structure of the Polymers of α-HaloacrylatesC. S. Marvel, E. D. Weil, L. B. Wakefield, and C. W. FairbanksCite this: J. Am. Chem. Soc. 1953, 75, 10, 2326–2330Publication Date (Print):May 1, 1953Publication History Published online1 May 2002Published inissue 1 May 1953https://pubs.acs.org/doi/10.1021/ja01106a012https://doi.org/10.1021/ja01106a012research-articleACS PublicationsRequest reuse permissionsArticle Views81Altmetric-Citations16LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
ChemInform Abstract: SYNTHESIS, RESOLUTION, ABSOLUTE STEREOCHEMISTRY, AND ENANTIOSELECTIVITY OF 3′,4′‐DIHYDROXYNOMIFENSINE (1984)

Abstract Das Dopamin‐agonistisch wirksame 3′,4′‐Dihydroxynotnifensin (VI) wird wegen des Asymmetriezentrums in 4‐Stellung zur Untersuchung des Wechselwirkungsmechanismus mit dem Rezeptor synthetisiert.
How fast can a quantum computer search? (1998)

This paper gives a simple proof of why a quantum computer, despite being in all possible states simultaneously, needs at least 0.707 sqrt(N) queries to retrieve a desired item from an unsorted list of items. The proof is refined to show that a quantum computer would need at least 0.785 sqrt(N) queries. The quantum search algorithm needs precisely this many queries.
Expressional Changes of the Vascular Antioxidant System in Atherosclerotic Coronary Arteries. (2002)

Oxidative stress induced by reactive oxygen species (ROS) plays an important role in atherogenesis, and the redox state is determined by the balance between antioxidants and the ROS generating system. To defend against enhanced ROS, mammalian cells have a complex network of antioxidant enzymes such as superoxide dismutase (SOD), glutathione peroxidase (GPx) and catalase. To clarify the role of the vascular antioxidant system, we investigated by immunohistochemistry the expressional changes of antioxidative enzymes in coronary arteries obtained from autopsied cases. In nonatherosclerotic coronary arteries, Cu/Zn SOD and Mn SOD were expressed in medial smooth muscle cells (SMC), whereas cytosolic GPx (GPx-1) was expressed mainly in endothelium and weakly in medial SMC. Catalase was expressed in medial SMC and endothelium. Progression of atherosclerosis did not result in an additional increase in the expression of antioxidative enzymes in SMC in the media or endothelium. However, migrating SMC and macrophages in atheromatous plaques expressed these four antioxidative enzymes intensively. Double staining with cell markers confirmed the cell-specific expression of the antioxidative enzymes. Thus, the expressional pattern showed regional heterogeneity. In response to oxidative stress, the vascular antioxidant system was upregulated in atherosclerotic lesions. The imbalance between vascular antioxidant and oxidant systems might play an important role in coronary atherogenesis.
In-Situ Dynamic Characterization of Energy Storage and Conversion Systems (2013)

The combustion of fossil fuels predominates in the commercial implementation of energy conversion and power generation. However, it brings severe problems to the environment due to inevitably incomplete combustion. Meanwhile, the price of fossil fuels keeps increasing due to the depletion of natural resources. The growing concerns of global warming, as well as the reducing availability of fossil fuels, require replacements of gasoline and diesel fuels, such as Fischer-Tropsch synthetic fuels [1-3], biofuels [4, 5], and hydrogen fuel [6, 7]. The thermal conversion efficiency of a traditional automobile engine is between 17% and 23% [8], limited by the intrinsic characteristics of Carnot cycle. Energy storage and conversion systems with low/zero emissions, high efficiency, and great durability are required by the development of sustainable energy and power economy.
Biochemical changes during the development of witches' broom: the most important disease of cocoa in Brazil caused by Crinipellis perniciosa (2005)

Witches' broom disease (WBD) is caused by the hemibiotrophic basidiomycete fungus Crinipellis perniciosa, which is one of the most important diseases of cocoa in the western hemisphere. In this study, the contents of soluble sugars, amino acids, alkaloids, ethylene, phenolics, tannins, flavonoids, pigments, malondialdehyde (MDA), glycerol, and fatty acids were analysed in cocoa (Theobroma cacao) shoots during the infection and development of WBD. Alterations were observed in the content of soluble sugars (sucrose, glucose, and fructose), asparagine and alkaloids (caffeine and theobromine), ethylene, and tannins. Ethylene and tannins increased prior to symptom development and declined with the death of the infected tissues. Furthermore, MDA and glycerol concentrations were higher in infected tissue than in the controls, while fatty acid composition changed in the infected tissues. Chlorophylls a and b were lower throughout the development of the disease while carotenoids and xanthophylls dropped in the infected tissue by the time of symptom development. These results show co-ordinated biochemical alterations in the infected tissues, indicating major stress responses with the production of ethylene. Ethylene levels are hypothesized to play a key role in broom development. Some of the other biochemical alterations are directly associated with ethylene synthesis and may be important for the modification of its effect on the infected tissues.
Induction of the respiratory burst in HL-60 cells. Correlation of function and protein expression. (1990)

Differentiation of myeloid cells is associated with the gradual acquisition of functional capacity to produce a respiratory burst. In our study HL-60 cells were differentiated to the monocyte phenotype with IFN-gamma or 1,25-dihydroxyvitamin D3, or to the neutrophil phenotype with retinoic acid or DMSO to compare the time-course of expression of membrane and cytosolic oxidase components, and to correlate this with the appearance of a functional oxidase. Over a 6-day period of induction the rank order of the ability of these agents to induce expression of PMA-stimulated superoxide production was: IFN-gamma greater than 1,25(OH)2D3 greater than retinoic acid greater than DMSO. Immunoblot analysis of HL-60 membranes and cytosol was used to assess the amount of specific phagocyte oxidase factors (91 and 22 kDa subunits of membrane cytochrome b558 (gp91 and p22), and 47 and 67 kDa cytosol oxidase factors (p47 and p67)). HL-60 cell membranes or cytosol were tested in a cell-free assay of superoxide production by mixing with normal neutrophil cytosol or membranes, respectively. p47 was first detected at 16 h of differentiation, increasing similarly thereafter with all induction regimens and reaching a maximum by 3 to 4 days. The earliest detection of p67 varied from 2 to 6 days depending on the inducing agent and appeared to be the limiting cytosol component. Small amounts of both subunits of cytochrome b558 were detected in uninduced HL-60 membranes, but were sufficient to support substantial superoxide production when combined with normal neutrophil cytosol. Both cytochrome b558 subunit proteins and membrane oxidase activity increased during differentiation in parallel. We conclude that membrane and cytosol components of the NADPH oxidase complex appear at different times and increase differently during HL-60 differentiation. The production of p67 is the major factor limiting the respiratory burst during HL-60 differentiation.
Strained bridgehead double bonds (1989)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTStrained bridgehead double bondsPhilip M. WarnerCite this: Chem. Rev. 1989, 89, 5, 1067–1093Publication Date (Print):July 1, 1989Publication History Published online1 May 2002Published inissue 1 July 1989https://pubs.acs.org/doi/10.1021/cr00095a007https://doi.org/10.1021/cr00095a007research-articleACS PublicationsRequest reuse permissionsArticle Views1074Altmetric-Citations153LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
A proline-rich structural protein of the surface sheath of larval Brugia filarial nematode parasites (1991)

Both cDNA and genomic DNA sequences have been isolated which encode a proline-rich precursor protein of the sheath from microfilariae, the first stage larvae of the filarial nematode parasites Brugia pahangi and Brugia malayi. This 22-kDa protein is soluble only under reducing conditions and is extensively cross-linked by both disulfide and nonreducible bonds. Immunogold electron microscopy shows that the protein is localized exclusively in the sheath, a vestigial remnant of the eggshell, which is retained by and encloses the mature microfilaria. Analysis by Western blotting confirms that the protein is expressed only in microfilariae and adult female worms, although transcripts are detectable only in adult females. The deduced amino acid sequence contains a short N-terminal hydrophobic putative leader sequence, a central repetitive domain that contains 14 copies of a degenerate 5-amino acid repeat with the consensus sequence Met-Pro-Pro-Gln-Gly, and a C-terminal proline-rich domain flanked by clusters of cysteine residues. These clusters can be aligned with cysteine residues implicated in cross-linking of a family of cuticular collagens originally identified in Caenorhabditis elegans but which extends to other nematodes.
A phospha-oseltamivir–biotin conjugate as a strong and selective adhesive for the influenza virus (2014)

We present the synthesis and application of a molecule containing both the powerful influenza neuraminidase (NA) inhibitor phospha-oseltamivir and d-biotin, connected via an undecaethylene glycol spacer. It inhibits influenza virus neuraminidase (from the H3N2 X31 virus) in the same range as oseltamivir, with a slow off-rate, and produces a stable NA-coated surface when loaded onto streptavidin-coated biosensors. Purified X31 virus binds to these loaded biosensors with an apparent dissociation constant in the low picomolar range and binding of antibodies to the immobilized virus could be readily detected. The compound is thus a potential candidate for the selective immobilization of influenza virus in influenza diagnosis, vaccine choice, development or testing.
ChemInform Abstract: HERSTELLUNG UND EINIGE UMSETZUNGEN VON STERISCH GEHINDERTEN CHINOAZIDEN (1974)

Abstract Natriumazid reagiert mit den Cyclohexadien‐4‐onen (I) in Dimethylformamid bzw. invwasserhaltigem Äthanol zu den 4‐Azido‐Verbindungen (II)"von denen (IIa) mit metallischem Natrium in Tetrahydrofuran das beständige Radikal (III) liefert.
Simulating Methane Emissions from Dairy Farms (2008)

As a sector, agriculture is reported to be the third greatest contributor of methane in the U.S., emitting one-quarter of total emissions. The primary sources of methane on dairy farms are animals and manure storages with smaller contributions from field-applied manure, feces deposited by grazing animals, and manure on barn floors. The Integrated Farm System Model was expanded to include simulation of methane emissions from enteric fermentation and the other farm sources. In simulating a representative 100-cow dairy farm in Pennsylvania, the model predicted a total average annual emission of 20 Mg CH4. This included an average annual emission of 135 kg CH4 per cow from the Holstein herd and an average emission of 5.4 kg CH4 per m3 of stored slurry manure, which were very similar to previously reported emissions. This expanded whole-farm model can be effectively used to evaluate proposed methane reduction strategies along with their impact on other environmental and economic issues.
Photo Gel–Sol/Sol–Gel Transition and Its Patterning of a Supramolecular Hydrogel as Stimuli‐Responsive Biomaterials (2008)

In a focused library of glycolipid-based hydrogelators bearing fumaric amide as a trans-cis photoswitching module, several new photoresponsive supramolecular hydrogelators were discovered, the gel-sol/sol-gel transition of which was pseudo-reversibly induced by light. Studying the optimal hydrogel by NMR spectroscopy and various microscopy techniques showed that the trans-cis photoisomerization of the double bond of the fumaric amide unit effectively caused assembly or disassembly of the self-assembled supramolecular fibers to yield the macroscopic hydrogel or the corresponding sol, respectively. The entanglement of the supramolecular fibers produced nanomeshes, the void space of which was roughly evaluated to be 250 nm based on confocal laser scanning microscopy observations of the size-dependent Brownian motion of nanobeads embedded in the supramolecular hydrogel. It was clearly shown that such nanomeshes become a physical obstacle that captures submicro- to micrometer-sized substrates such as beads or bacteria. By exploiting the photoresponsive property of the supramolecular nanomeshes, we succeeded in off/on switching of bacterial movement and rotary motion of bead-tethered F(1)-ATPase, a biomolecular motor protein, in the supramolecular hydrogel. Furthermore, by using the photolithographic technique, gel-sol photopatterning was successfully conducted to produce sol spots within the gel matrix. The fabricated gel-sol pattern not only allowed regulation of bacterial motility in a limited area, but also off/on switching of F1-ATPase rotary motion at the single-molecule level. These results demonstrated that the photoresponsive supramolecular hydrogel and the resulting nanomeshes may provide unique biomaterials for the spatiotemporal manipulation of various biomolecules and live bacteria.
Protein supplementation of grass silages of differing digestibility for growing steers (2001)

Previous studies have demonstrated that protein sources which are primarily degraded in the rumen such as rapeseed meal or soyabean meal may be as effective as a less rumen degradable protein source such as fishmeal in supporting higher levels of animal performance in young steers fed on grass silage. However, the response to type of protein supplement is likely to be influenced by the composition of the basal diet. This study has examined the effect of supplementing silages prepared from early (EH) and late (LH) harvested grass with two protein sources of differing rumen degradability, rapeseed meal (RSM) and fishmeal (FM) or a mixture of the two (M), thus creating eight experimental diets of LH, LHRSM, LHFM, LHM, EH, EHRSM, EHFM and EHM. Silage was offered ad libitum and supplements were included at 100 g fresh weight/kg silage DM intake. The RSM and M diets were made isonitrogenous with FM diets by the addition of urea. Animals remained on diets for 18 weeks and liveweights were monitored for a further 13 weeks while the animals were at pasture. Dry matter (DM) intakes and liveweight gains were higher with EH than with LH silage ( P < 0·001). Response to type of protein supplement was dependent on silage quality. On LH silage, higher intakes were noted on FM and M (82·4 and 82·8 g DM/unit metabolic liveweight/day, respectively) relative to silage only (75·8 g DM/unit metabolic liveweight/day) and this contributed towards higher liveweight gains ( P < 0·01). Liveweight gains tended to be higher on LH silage supplemented with FM compared to RSM (0·76 v. 0·67 kg/day, respectively, P = 0·08). In comparison, on EH silage, relative to EH unsupplemented, the intake was highest on M (89·2 v. 96·6 g DM/unit metabolic liveweight/day), but liveweight gains were not significantly different between supplements. On turnout to pasture, those animals fed on silage alone exhibited compensatory growth ( P < 0·025) with the result that those fed on LH silage only grew faster and achieved the same liveweight after 13 weeks at grass as those supplemented with RSM or M. There was a tendency for those fed on FM to maintain an advantage in liveweight after the period at pasture. On EH silage, at the end of the grazing period no significant differences in liveweight existed between the different supplements and on average were 23 kg heavier than EH silage unsupplemented. In conclusion, silage type (stage of harvest and quality) and protein supplementation influenced animal performance. On late harvest and poorer digestibility silage, there was some indication that feeding fishmeal was better than rapeseed but this was less evident on early harvest and higher digestibility silage. However, considering the price differential between these two supplements and small difference in animal performance it is concluded that rapeseed meal is as effective as fishmeal when used as a protein supplement for growing cattle fed on grass silage.
Transmission of Radiation-Induced Acentric Chromosomal Fragments to Micronuclei in Normal Human Fibroblasts (1991)

A simplifying assumption made when calculating the probability of a chromosomal aberration resulting in a micronucleus is that virtually all radiation-induced micronuclei result from acentric fragments. In the present study we used antibodies to chromosomal centromeres (kinetochores) to determine the frequency of centric versus acentric micronuclei in normal human fibroblasts exposed to 6 Gy of 60Co gamma rays while they were in density-inhibited growth. Up to 14% of the micronuclei induced by this exposure contained one or more kinetochores; i.e., they were not composed of acentric chromatin. By deleting kinetochore-positive micronuclei from the analysis, and by reconstructing micronucleus frequencies based on the fraction of cells that had divided following radiation exposure, a direct comparison between micronuclei and acentric chromosome fragments was made. On that basis, the probability of an acentric fragment becoming a visible micronucleus in either daughter cell of a dividing pair was estimated to be about 0.6. The distribution of acentric fragments among mitotic cells conformed to Poisson expectation, while the distribution of micronuclei among daughter cells was significantly overdispersed. The phenomenon of overdispersion is discussed in connection with proposed cellular processes that effect a nonrandom segregation of acentric fragments.
Unforced Image Partitioning by Weighted Pyramid Linking (1982)

Abstract : This paper describes a method of image segmentation that creates a partition of the image into compact, homogeneous regions using a parallel, iterative approach that does not require immediate forced choices. The approach makes use of a 'pyramid' of successively reduced-resolution versions of the image. It defines link strengths between pairs of pixels at successive levels of this pyramid, based on proximity and similarity, and iteratively recomputes the pixel values and adjusts the link strengths. After a few iterations, the link strengths stabilize, and the links that remain strong define a set of subtrees of the pyramid. Each such tree represents a compact (piece of a ) homogeneous region in the image; the leaves of the subtree are the pixels in the region, and the size of the region depends on how high the root of the tree lies in the pyramid. Thus the trees define a partition of the image into (pieces of) homogeneous regions.