gebhart/patrepeval huggingface dataset:
Vfr controls quorum sensing in Pseudomonas aeruginosa (1997)

Pseudomonas aeruginosa controls several genes in a cell density-dependent manner through a phenomenon termed quorum sensing. The transcriptional activator protein of the las quorum-sensing system is encoded for by the lasR gene, which is at the top of a quorum-sensing hierarchy. The activation of LasR as a transcriptional activator induces the expression of multiple genes that code for factors important for virulence, and rhlR, which encodes the transcriptional activator protein of the P. aeruginosa rhl quorum-sensing system. Elucidating the method of lasR regulation is crucial to understanding P. aeruginosa quorum sensing. In this report, we present studies on the transcriptional control of lasR. We identified two distinct transcriptional start sites for lasR that were located 201 bp (transcript T1) and 231 bp (transcript T2) upstream from the lasR start of translation. With the use of transcriptional lasRp-lacZ fusions, we showed that in P. aeruginosa, lasR expression is cell density dependent. This gene was expressed at a basal level until it was induced during the second half of log-phase growth, with expression becoming maximal during stationary-phase growth. We also showed that lasR expression was regulated through the cyclic AMP receptor protein (CRP)-binding consensus sequence in its promoter region. Our results from P. aeruginosa mutant studies and gel retardation assays indicated that this regulation was mediated by Vfr, a homolog of the Escherichia coli CRP.
Food‐contact epoxy resin: Co‐variation between migration and degree of cross‐linking (1997)

In order to predict the behaviour towards foodstuffs of an epoxy resin composed of bisphenol A diglycidyl ether (BADGE), 4,4'-methylenedianiline (MDA) and additives (plasticizers: dibutylphthalate (DBP), dioctylphthalate (DOP); accelerator: salicylic acid; inorganic fillers), a co-variation was established between the parameters evaluating the degree of cross-linking of the three-dimensional network and the migration of constituent molecules into various food simulants (distilled water, distilled water/ethanol/acetic acid, distilled water/ethanol). Varied degrees of cross-linking were obtained by subjecting the resin to different curing temperatures: respectively, 5 degrees C, 20 degrees C, 50 degrees C and 90 degrees C for 7 days. Irrespective of the food stimulant tested, specific migrations (DBP, DOP, salicylic acid, primary aromatic amines) diminished greatly as the curing temperature increased. At the same time, the degree of cross-linking increased with curing temperature, as indicated by the increase in glass transition temperature, the decrease in residual reaction exotherms and increased stability of the rubber storage modulus E'rub (increase in cross-link nodes), the fall in relaxation enthalpies (reduction in physical ageing) and the decreased amplitude of the loss-factor, tan delta (reduction in chain mobility). Maximum cross-linking was obtained in the resin cured at 90 degrees C (temperature above Tg infinity). In contrast to the degree of cross-linking, evaporation contributed little to the reduction of migration due to the elevation of curing temperature.
INRA's scientific priorities for 2010-2020: targeted research (2010)

INRA is the French leading research institute for food, agriculture and environment, with a strong multidisciplinary basis in life, environmental, social and economic sciences. INRA research programmes cover a broad scope and span in the microbial, plant and animal kingdoms, from molecules and cells to whole organisms and to continental ecosystems, from the understanding of individual economic decisions to the modelling of agricultural markets.
Carbon Dioxide-Induced Anesthesia Results in a Rapid Increase in Plasma Levels of Vasopressin (2009)

Brief anesthesia, such as after exposure to high levels of carbon dioxide, prior to decapitation is considered a more humane alternative for the euthanasia of rodents, compared with use of decapitation alone. Studies of the levels of certain stress hormones in plasma such as corticosterone and ACTH have supported the use of this method of euthanasia in endocrinological and molecular studies. In the current study, rats were briefly exposed to a chamber filled with carbon dioxide until recumbent (20-25 sec), immediately killed via decapitation, and trunk blood collected; findings were compared with rats killed via decapitation with no exposure to carbon dioxide. RIAs were used to measure arginine vasopressin (AVP) and ACTH immunoreactivity (ir) in plasma. Whereas ACTH-ir levels remained steady after brief exposure to carbon dioxide (in accordance with results of other investigators), AVP-ir levels were increased by more than an order of magnitude. These results were confirmed by quantitative capillary-liquid chromatography-mass spectrometry, indicating this observation of rapid increase in plasma AVP-ir levels is not due to nonspecific recognition by the antibody used in the RIA. Likewise, using capillary-liquid chromatography-mass spectrometry, we observed a rapid increase in plasma oxytocin levels after carbon dioxide exposure. These surprising findings have important implications for the design and interpretation of studies involving brief carbon dioxide exposure prior to decapitation as well as those with euthanasia resulting from carbon dioxide-induced asphyxiation.
Alternative Chemical Modifications Reverse the Binding Orientation of a Pharmacophore Scaffold in the Active Site of Macrophage Migration Inhibitory Factor (2007)

Pharmacophores are chemical scaffolds upon which changes in chemical moieties (R-groups) at specific sites are made to identify a combination of R-groups that increases the therapeutic potency of a small molecule inhibitor while minimizing adverse effects. We developed a pharmacophore based on a carbonyloxime (OXIM) scaffold for macrophage migration inhibitory factor (MIF), a protein involved in the pathology of sepsis, to validate that inhibition of a catalytic site could produce therapeutic benefits. We studied the crystal structures of MIF.OXIM-based inhibitors and found two opposite orientations for binding to the active site that were dependent on the chemical structures of an R-group. One orientation was completely unexpected based on previous studies with hydroxyphenylpyruvate and (S,R)-3-(4-hydroxyphenyl)-4,5-dihydro-5-isoxazole acetic acid methyl ester (ISO-1). We further confirmed that the unexpected binding mode targets MIF in cellular studies by showing that one compound, OXIM-11, abolished the counter-regulatory activity of MIF on anti-inflammatory glucocorticoid action. OXIM-11 treatment of mice, initiated 24 h after the onset of cecal ligation and puncture-induced sepsis, significantly improved survival when compared with vehicle-treated controls, confirming that inhibition of the MIF catalytic site could produce therapeutic effects. The crystal structures of the MIF inhibitor complexes provide insight for further structure-based drug design efforts.
Uncovering G protein-coupled receptor kinase-5 as a histone deacetylase kinase in the nucleus of cardiomyocytes (2008)

G protein-coupled receptor (GPCR) kinases (GRKs) are critical regulators of cellular signaling and function. In cardiomyocytes, GRK2 and GRK5 are two GRKs important for myocardial regulation, and both have been shown to be up-regulated in the dysfunctional heart. We report that increased levels and activity of GRK5 in failing myocardium may have unique significance due to its nuclear localization, a property not shared by GRK2. We find that transgenic mice with elevated cardiac GRK5 levels have exaggerated hypertrophy and early heart failure compared with control mice after pressure overload. This pathology is not present in cardiac GRK2-overexpressing mice or in mice with overexpression of a mutant GRK5 that is excluded from the nucleus. Nuclear accumulation of GRK5 is enhanced in myocytes after aortic banding in vivo and in vitro in myocytes after increased G alpha q activity, the trigger for pressure-overload hypertrophy. GRK5 enhances activation of MEF2 in concert with Gq signals, demonstrating that nuclear localized GRK5 regulates gene transcription via a pathway critically linked to myocardial hypertrophy. Mechanistically, we show that this is due to GRK5 acting, in a non-GPCR manner, as a class II histone deacetylase (HDAC) kinase because it can associate with and phosphorylate the myocyte enhancer factor-2 repressor, HDAC5. Moreover, significant HDAC activity can be found with GRK5 in the heart. Our data show that GRK5 is a nuclear HDAC kinase that plays a key role in maladaptive cardiac hypertrophy apparently independent of any action directly on GPCRs.
Observation of Lattice Defects in Solid Helium by SR X-Ray Topography (1987)

Direct observation of lattice defects in solid helium-4 by SR X-ray is reported. A strong lattice distortion in a helium crystal caused by a pressure decrease in the sample cell in the course of the crystal growth was demonstrated. Recovery processes of the lattice distortion and the martensitic transformation from the hcp to the bcc structure were also observed.
Bentonite–Acrylamide Hydrogels Prepared by the Nonmixing Method: Characterization and Properties (2019)

A significant amount of research has been conducted on bentonite-acrylamide hydrogels. These gels are usually prepared by uniformly mixing bentonite with reactive monomers. Herein, a new preparation method of bentonite-acrylamide hydrogels has been proposed to cater to one novel application of bentonite-acrylamide hydrogels. In this method, bentonite-acrylamide hydrogel was obtained by pressing bentonite into a thin mud cake and extruding a mixed liquor of acrylamide, a cross-linking agent, an initiator, and water into the thin mud cake and then subjecting the system to water-bath curing. The effects of extrusion pressure, extrusion time, and acrylamide concentration on the tensile strength and elemental composition of bentonite-acrylamide hydrogel were investigated. The results show that the tensile strength of the bentonite-acrylamide hydrogel first increased and then tended to be stable with the further increase in extrusion pressure and extrusion time. As the concentration of acrylamide increased, the tensile strength of the bentonite-acrylamide hydrogel increased first and then decreased slightly. With the increase in extrusion pressure, extrusion time, and acrylamide concentration, the contents of C and N elements in the thin mud cake gradually increased and then tended to be stable, which reflects the state of the monomer entering the thin mud cake. In addition, the elemental composition of the bentonite-acrylamide hydrogel was analyzed via the scanning electron microscopy-energy dispersive X-ray spectrometry method, and it was found that the composition of the hydrogel was relatively uniform in the direction of mixed liquor extrusion.
A 3D bioprinted hybrid encapsulation system for delivery of human pluripotent stem cell-derived pancreatic islet-like aggregates (2021)

Islet transplantation is a promising treatment for type 1 diabetes. However, treatment failure can result from loss of functional cells associated with cell dispersion, low viability, and severe immune response. To overcome these limitations, various islet encapsulation approaches have been introduced. Among them, macroencapsulation offers the advantages of delivering and retrieving a large volume of islets in one system. In this study, we developed a hybrid encapsulation system composed of a macroporous polymer capsule with stagger-type membrane and assemblable structure, and a nanoporous decellularized extracellular matrix (dECM) hydrogel containing pancreatic islet-like aggregates using 3D bioprinting technique. The outer part (macroporous polymer capsule) was designed to have an interconnected porous architecture, which allows insulin-producing<i>β</i>-cells encapsulated in the hybrid encapsulation system to maintain their cellular behaviors, including viability, cell proliferation, and insulin-producing function. The inner part (nanoporous dECM hydrogel), composed of the 3D biofabricated pancreatic islet-like aggregates, was simultaneously placed into the macroporous polymer capsule in one step. The developed hybrid encapsulation system exhibited biocompatibility<i>in vitro</i>and<i>in vivo</i>in terms of M1 macrophage polarization. Furthermore, by controlling the printing parameters, we generated islet-like aggregates, improving cell viability and functionality. Moreover, the 3D bioprinted pancreatic islet-like aggregates exhibited structural maturation and functional enhancement associated with intercellular interaction occurring at the<i>β</i>-cell edges. In addition, we also investigated the therapeutic potential of a hybrid encapsulation system by integrating human pluripotent stem cell-derived insulin-producing cells, which are promising to overcome the donor shortage problem. In summary, these results demonstrated that the 3D bioprinting approach facilitates the fabrication of a hybrid islet encapsulation system with multiple materials and potentially improves the clinical outcomes by driving structural maturation and functional improvement of cells.
Micromechanical accelerometer integrated with MOS detection circuitry (1982)

A cantilever beam accelerometer is described in which the small cantilever sensing element is integrated with and fabricated alongside MOS detection circuitry. The total area of the detector/circuit combination is about 15000 µm <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> (24 mil <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> ). Fully compatible and conventional materials and processing steps are employed throughout the fabrication schedule. Accelerations of the chip normal to its surface induce motions in the cantilever beam. These motions result in capacitance variations which drive the simple MOS detection circuit. Sensitivities of about 2.2 mV/g of acceleration were measured, corresponding to beam motions of about 68 nm/g, with a beam mechanical resonant frequency of 2.2 kHz. These results were in close agreement with detailed mechanical calculations and circuit modeling.
Prediction of the Tensile Load Capability of Co-cured Steel-Composite Tubular Single Lap Joints Considering Thermal Degradation (2000)

Co-cured joints composed of composite and steel structures are realized by the excess resin extracted during cure of composite prepreg and the coupling pressure due to residual thermal stresses generated by the difference of coefficients of thermal expansion between the two materials. Although the excess resin from the composite prepreg is less dependent on the environmental temperature compared to conventional epoxy adhesives in which rubber is added to strengthen toughness, the coupling pressure is much dependent on the environmental temperature. In this study, the tensile load capability of co-cured joints composed of carbon fiber epoxy composite and steel adherends was experimentally investigated with respect to the stacking sequence of the composite and the environmental temperature. Also, the stress distributions in the composite were calculated by finite element method, from which the failure index of the composite adherend was calculated considering thermal degradation of the composite. The co-cured steel-composite tubular single lap joint under tensile loads might be applied to hybrid structures such as golf clubs and automotive composite propeller shafts which have a conventional adhesively-bonded joint by epoxy adhesives with fillers between a carbon/epoxy shaft and a metal shaft.
ChemInform Abstract: Lewis Acid Catalyzed Rearrangement of Donor‐Acceptor Substituted Vinylcyclopropanes. (1992)

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
A Rapid Method for the Resolution of s-Butyl Alcohol<sup>1</sup> (1953)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTA Rapid Method for the Resolution of s-Butyl Alcohol1Simon W. Kantor and Charles R. HauserCite this: J. Am. Chem. Soc. 1953, 75, 7, 1744Publication Date (Print):April 1, 1953Publication History Published online1 May 2002Published inissue 1 April 1953https://doi.org/10.1021/ja01103a515RIGHTS & PERMISSIONSArticle Views51Altmetric-Citations9LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (169 KB) Get e-Alerts Get e-Alerts
A Neural Network Based Spatial Light Scattering Instrument for (1997)

A laser light scattering instrument has been designed to facilitate the real-time detection of potentially hazardous respirable fibers, such as asbestos, within an ambient environment. The instrument captures data relating to the spatial distribution of light scattered by individual particles in flow using a dedicated multi-element photodiode detector array. These data are subsequently processed using an artificial neural network which has previously been trained to recognise those features or patterns within the light scattering distribution which may be characteristic of the specific particle types being sought, such as for example, crocidolite or chrysotile asbestos fibers. Each particle is thus classified into one of a limited set of classes based upon its light scattering properties, and from the accumulated data a particle concentration figure for each class may be produced and updated at regular intervals. Particle analysis rates in excess of 10 3 per second within a sample volume flow-rate of 1 litre per minute are achievable, offering the possibility of detecting fiber concentrations at the recommended maximum exposure limit of 0.1 fibers/ml within a sampling period of a few seconds.
Full-length messenger RNA sequences greatly improve genome annotation (2002)

Our results demonstrate that sequencing of large numbers of full-length transcripts followed by computational mapping greatly improves identification of the complete exon structures of eukaryotic genes. In addition, we are able to find numerous introns in the untranslated regions of the genes.
Metathesis of Alkanes: Evidence for Degenerate Metathesis of Ethane over a Silica-Supported Tantalum Hydride Prepared by Surface Organometallic Chemistry (1999)

The mutual exchange of methyl groups of ethane molecules is catalyzed by a silica-supported tantalum hydride surface complex (see the schematic representation of the transition states). This process, which resembles degenerate olefin metathesis, is five times faster than the productive alkane metathesis.
Interleukin-4 Inhibits Granulocyte-Macrophage Colony-Stimulating Factor, Interleukin-6, and Tumor Necrosis Factor-Alpha Expression by Human Monocytes in Response to Polymethylmethacrylate Particle Challenge In Vitro (2000)

The outcome of total joint arthroplasty is determined by biological events at the bone-implant interface. Macrophages phagocytose implant or wear debris at the interface and release proinflammatory mediators such as interleukins 1 and 6, tumor necrosis factor-alpha, and prostaglandin E2. These mediators are thought to contribute to the resorption of periprosthetic bone. Previous studies of tissues harvested from the bone-implant interface of failed orthopaedic implants demonstrated a possible role for two other cytokines, granulocyte-macrophage colony-stimulating factor and interleukin-4. The present study examined the effects of in vitro challenge with polymethylmethacrylate particles on the expression of granulocyte-macrophage colony-stimulating factor by primary human monocytes/macrophages and the role of interleukin-4 in regulating this expression. The polymethylmethacrylate particles caused a dose-dependent release of granulocyte-macrophage colony-stimulating factor at 48 hours. This release was accompanied by increased expression of interleukins 6 and 1beta and tumor necrosis factor-alpha. Release of the lysosomal enzyme hexosaminidase also increased in response to the particles. Interleukin-4 inhibited the expression of granulocyte-macrophage colony-stimulating factor, interleukin-6, and tumor necrosis factor-alpha at 48 hours in a dose-dependent manner. The data presented in this study confirm the hypothesis that interleukin-4 downregulates particle-induced activation of macrophages, as demonstrated by the decreased release of proinflammatory mediators.
Transcriptional induction of pim-1 protein kinase gene expression by interferon gamma and posttranscriptional effects on costimulation with steel factor (1995)

Steel factor (SLF) synergizes with interferon gamma (IFN gamma) to stimulate proliferation of the human factor-dependent cell line MO7e. We examined the effects of IFN gamma and SLF treatment, alone or in combination, on the expression of a 33-kD cytoplasmic protein serine/threonine kinase designated pim-1 whose expression has been closely associated with proliferation induced by related myeloid cytokines. IFN gamma alone, but not SLF, stimulated expression of pim-1 RNA and protein in MO7e cells; compared with IFN gamma alone, costimulation with IFN gamma and SLF resulted in a twofold to threefold increase in pim-1 message and protein expression, correlating with synergistic effects on cell proliferation. Both IFN gamma and IFN gamma/SLF induced pim-1 mRNA in the absence of de novo protein synthesis. Nuclear run-on assays showed that, although IFN gamma alone increased the rate of pim-1 gene transcription, costimulation with IFN gamma and SLF did not further potentiate this effect; however, the stability of pim-1 message was significantly enhanced in the presence of both cytokines. An IFN gamma-responsive element within the 5' flanking region of the pim-1 gene that could confer IFN gamma responsiveness on a heterologous promoter was identified. This sequence, designated PMGAS, formed a specific complex with Stat (signal transducers and activators of transcription) 1 alpha (the p91 subunit of the transcription factor ISGF3 [interferon-stimulated gene factor 3]) in IFN gamma-treated cell extracts, suggesting that the transcriptional effects of IFN gamma on pim-1 expression may be mediated by Stat 1 alpha.