gebhart/patrepeval huggingface dataset:
ADAM10 controls collagen signaling and cell migration on collagen by shedding the ectodomain of discoidin domain receptor 1 (DDR1) (2014)

Discoidin domain receptor 1 (DDR1) is a receptor tyrosine kinase that binds and transmits signals from various collagens in epithelial cells. However, how DDR1-dependent signaling is regulated has not been understood. Here we report that collagen binding induces ADAM10-dependent ectodomain shedding of DDR1. DDR1 shedding is not a result of an activation of its signaling pathway, since DDR1 mutants defective in signaling were shed in an efficient manner. DDR1 and ADAM10 were found to be in a complex on the cell surface, but shedding did not occur unless collagen bound to DDR1. Using a shedding-resistant DDR1 mutant, we found that ADAM10-dependent DDR1 shedding regulates the half-life of collagen-induced phosphorylation of the receptor. Our data also revealed that ADAM10 plays an important role in regulating DDR1-mediated cell adhesion to achieve efficient cell migration on collagen matrices.
Hot isostatic pressing of the ceramic superconductor YBa<sub>2</sub>Cu<sub>3</sub>O<sub>7</sub>—<i>x</i> (1991)

Click to increase image sizeClick to decrease image size Additional informationNotes on contributorsA.W. von StumbergAuthorsThe authors are at the Institut für Angewandte Werkstofforschung, KFA Jülich. FRG.D. StöverAuthorsThe authors are at the Institut für Angewandte Werkstofforschung, KFA Jülich. FRG.H.P. BuchkremerAuthorsThe authors are at the Institut für Angewandte Werkstofforschung, KFA Jülich. FRG.R. HeckerAuthorsThe authors are at the Institut für Angewandte Werkstofforschung, KFA Jülich. FRG.
Towards the theory of hardness of materials (2010)

Recent studies have shown that hardness, a complex property, can be calculated using very simple approaches or even analytical formulae. These form the basis for evaluating controversial experimental results (as we illustrate for TiO2-cotunnite) and enable a systematic search for novel hard materials, for instance, using global optimization algorithms (as we show on the example of SiO2 polymorphs).
Abstract 5098: Novel characteristic proteins of large cell neuroendocrine carcinoma of lung (2011)

Abstract Large cell neuroendocrine carcinoma (LCNEC) is a subtype of large cell carcinoma (LCC), which has a neuroendocrine feature like small cell lung carcinoma (SCLC). We applied a novel emerging proteomic method using tissues to identify characteristic proteins of LCNEC. Proteins from cancer cells, which collected from formalin fixed paraffin-embedded (FFPE) tissues by laser microdissection were extracted and subjected to liquid chromatography / mass spectrometry. Proteins identified by database search were semi-quantified and subjected further to statistical evaluation. We identified three characteristic proteins of LCNEC, aldehyde dehydrogenase 1 family, member A1 (AL1A1), aldo-keto reductase family 1, member C1 (AK1C1) and C3 (AK1C3) that have been considered as some of cancer stem cell markers. Immunohistochemical verification showed those proteins correlated well with the frequency of immunopositive cells with AL1A1 the greatest. These results suggest that candidate biomarkers of LCNEC are related to cancer stem cells, consistent with its undifferentiated and aggressive nature. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 102nd Annual Meeting of the American Association for Cancer Research; 2011 Apr 2-6; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2011;71(8 Suppl):Abstract nr 5098. doi:10.1158/1538-7445.AM2011-5098
Integrated microfluidic platform for instantaneous flow and localized temperature control (2015)

We developed an integrated microfluidic platform for instantaneous flow and localized temperature control.
Variation in virus populations and growth characteristics of two sugarcane cultivars naturally infected by <i>Sugarcane yellow leaf virus</i> in different geographical locations (2007)

Two sugarcane cultivars (R570 and SP71‐6163) naturally infected by Sugarcane yellow leaf virus (SCYLV) were each imported from several geographical locations into a sugarcane yellow leaf‐free environment (Montpellier, France). Plants were grown as plant cane for 5–6 months and the experiment was repeated for three consecutive years (2003–2005) in a greenhouse. Several sugarcane‐growth and disease characteristics were monitored to identify variation in pathogenicity of SCYLV. Depending on their geographical origin, sugarcane cvs R570 and SP71‐6163 were infected by SCYLV genotypes BRA‐PER or REU, or a mixture of the two. Severity of symptoms did not vary between plants of cv. R570, but variation in disease severity between plants of cv. SP71‐6163 from different geographical locations suggested the occurrence of pathogenic variants of SCYLV. For each sugarcane cultivar, differences in stalk length, number of stalk internodes, virus titre in the top visible dewlap leaf, and percentage of infection of leaf and stalk phloem vessels were also found between plants from different geographical origins. However, these differences were not always reproducible from one year to another, suggesting occurrence of different plant responses to SCYLV isolates under varying environmental conditions.
Tyrosine Phosphorylation of the p21 Cyclin-dependent Kinase Inhibitor Facilitates the Development of Proneural Glioma (2012)

Phosphorylation of Tyr-88/Tyr-89 in the 3(10) helix of p27 reduces its cyclin-dependent kinase (CDK) inhibitory activity. This modification does not affect the interaction of p27 with cyclin-CDK complexes but does interfere with van der Waals and hydrogen bond contacts between p27 and amino acids in the catalytic cleft of the CDK. Thus, it had been suggested that phosphorylation of this site could switch the tumor-suppressive CDK inhibitory activity to an oncogenic activity. Here, we examined this hypothesis in the RCAS-PDGF-HA/nestin-TvA proneural glioma mouse model, in which p21 facilitates accumulation of nuclear cyclin D1-CDK4 and promotes tumor development. In these tumor cells, approximately one-third of the p21 is phosphorylated at Tyr-76 in the 3(10) helix. Mutation of this residue to glutamate reduced inhibitory activity in vitro. Mutation of this residue to phenylalanine reduced the tumor-promoting activity of p21 in the animal model, whereas glutamate or alanine substitution allowed tumor formation. Consequently, we conclude that tyrosine phosphorylation contributes to the conversion of CDK inhibitors from tumor-suppressive roles to oncogenic roles.
Positron emission tomography (PET) neurochemistry: where are we now and where are we going? (2003)

A basic neuroscientist reading about ‘brain functional mapping’ might be forgiven for thinking all PET-based (positron emission tomography) investigations of brain function have been superseded by functional magnetic resonance imaging (fMRI). Nothing could be further from the truth. Certainly, in many circumstances fMRI is replacing PET for imaging regional cerebral blood-flow changes induced by cognitive tasks – the basis of brain functional mapping paradigms where blood flow is used to index neuronal activation (Raichle 1987). However, brain PET is first and foremost a technique for imaging neurochemistry in the living brain (Pike 1993; Grasby et al. 1996; Grasby 2000). As such it is unrivalled in the potential diversity of imageable neurochemical targets and the sensitivity of detection. Neurochemical targets can be measured at very low concentrations with PET; thus many central nervous system (CNS) receptor systems, typically at concentrations of nmoles/g or pmoles/g tissue, can be investigated.
HIV-2 infection among prostitutes working in The Gambia: association with serological evidence of genital ulcer diseases and with generalized lymphadenopathy. (1991)

Three hundred and fifty-five prostitutes working in The Gambia were enrolled in a study of retroviral infections. Eight-seven (24.6%) were infected with HIV-2 only, two (0.6%) with HIV-1 only, four (1.1%) had sera showing double HIV-1/HIV-2 reactivity, and 37 (10.4%) were seropositive for HTLV-I. After allowing for socioeconomic and serological variables in a multivariate analysis, HIV-2 infection was associated with serological evidence of a previous episode of syphilis [a rapid plasma reagin (RPR) positive/Treponema pallidum haemagglutination assay (TPHA) positive; odds ratio (OR) = 2.18, 95% confidence interval (CI) = 1.19-3.98], with having antibodies against Haemophilus ducreyi (OR = 2.05, 95% CI = 0.89-4.70) or against HTLV-I (OR = 2.17, 95% CI = 0.91-5.19). HIV-2-seropositive prostitutes were three times more likely [17 out of 78 (22%) versus 15 out of 219 (7%), P less than 0.001] to have generalized lymphadenopathy than those who were seronegative. These data suggest that genital ulcer diseases may facilitate the transmission of HIV-2, and that HIV-2 rapidly induces the appearance of generalized lymphadenopathy in a substantial proportion of infected individuals.
X-ray fluorescence measurements of toxic metal content in ash from municipal solid waste incineration (2016)

The vision of this paper is development of an online X-ray fluorescence method for monitoring of metal content in ash from municipal solid waste (MSW) incineration. With such measurements directly on site it is possible to optimize an ash washing process in incineration plants, allowing the fly ash to be stored in a landfill for non-hazardous waste. The presented X-ray fluorescence measurement assures that the measurement accuracy is sufficient for metal content monitoring. The actual measurement process is also fast enough to be possible to implement as an online measurement method. The optimal measurement setup is different for different metals. Several different metals might need environmental monitoring, which metals might vary over time due to systematic variations in waist content. Detection of a wide range of metals will require an X-ray source with variable voltage and multiple detectors.
Simultaneous determination of paraquat and diquat utilizing those oxidation products by high performance liquid chromatography. (1988)

Method for the analysis of paraquat and diquat with those oxidation products were studied by high performance liquid chromatography (HPLC) and thin-layer chromatography (TLC). Paraquat and diquat were easily oxidized by potassium ferricyanide in alkaline solution, and the former formed 1, 1'-dimethyl-4, 4'-bipyridyl-2, 2'-dione [I], the latter formed 6, 7-dihydrodipyrido [1, 2-a : 2', 1'-c] pyrazine-4, 9-dione [II]. Oxidative reaction of paraquat and diquat has been carried out in the stirred suspension of 1%-potassium ferricyanide in 9 N-sodium hydroxide at room temperature over 1 min. These oxidation products were determined by HPLC using a reversed phase column packed with Shim-pack CLC-ODS (6.0 mm i.d.×0.15 m) and an ionpairing reagent as a mobile phase with a fluorescence spectroscopic detector. The mobile phase consisted of 0.001 M sodium 1-octanesulfonate in 10% acetonitrile-10 mM phosphate buffer (pH 2.6). The calibration curves gave a good linearity in the range of 0.1-10μg/ml on paraquat and 0.3-10μg/ml on diquat. These oxidation products were separated on silica gel thin-layer chromatogram with a solvent system consisting of chloroform-acetone-methanol (8 : 1 : 1). Rf values of I and II were 0.47 and 0.64, respectively. Detection limits of paraquat and diquat were 20 ng and 10 ng, respectively.
Unexpected Binding Mode of a Cyclic Sulfamide HIV-1 Protease Inhibitor (1997)

Two cyclic, C2-symmetric HIV-1 protease inhibitors, one sulfamide and one urea derivative, both comprising phenyl ether groups in the P1/P1' positions, were cocrystallized with HIV-1 protease, and the crystal structures were determined to 2.0 A resolution. The structure of the urea 2 showed a conformation similar to that reported for the related urea 3 by Lam et al., while the sulfamide 1 adopted an unanticipated conformation in which the P1' and P2' side chains were transposed.
Direct laser acceleration of electrons assisted by strong laser-driven azimuthal plasma magnetic fields (2020)

A high-intensity laser beam propagating through a dense plasma drives a strong current that robustly sustains a strong quasistatic azimuthal magnetic field. The laser field efficiently accelerates electrons in such a field that confines the transverse motion and deflects the electrons in the forward direction. Its advantage is a threshold rather than resonant behavior, accelerating electrons to high energies for sufficiently strong laser-driven currents. We study the electron dynamics via a test-electron model, specifically deriving the corresponding critical current density. We confirm the model's predictions by numerical simulations, indicating energy gains two orders of magnitude higher than achievable without the magnetic field.
Electron-rich sheath dynamics. II. Sheath ionization and relaxation instabilities (2011)

Instabilities in an electron-rich sheath on a plane electrode in a discharge plasma have been investigated experimentally. The high-frequency sheath-plasma instability near the electron plasma frequency is observed. With increasing dc voltage, the instability exhibits bursty amplitude and frequency jumps. The electrode current shows spikes and jumps, and the plasma potential near the electrode shows large fluctuations below the ion plasma frequency. Sheath-ionization has been identified as the cause for these low frequency instabilities. Electrons energized in the sheath produce ions which reduce the space charge in the sheath and the electric field and the ionization rate. Ions are ejected from the sheath which increases the charge density, electric field, and ionization rate. The positive feedback between these processes leads to a relaxation instability whose time scale is determined by ion inertia and ionization rates. The associated density and potential fluctuations affect the amplitude and frequency of the sheath-plasma instability. When the sheath ionization rate exceeds the ion losses, the sheath expands into an anode plasma or “fireball.” The potential drop across the sheath decreases and the sheath-plasma instability vanishes. The electrode current-voltage characteristics develop a region of negative conductance. For short grid voltage pulses, the ionization effects can be avoided.
Endogenous prolactin generated during peripheral inflammation contributes to thermal hyperalgesia (2011)

Prolactin (PRL) is a hormone and a neuromodulator. It sensitizes TRPV1 (transient receptor potential cation channel subfamily V member 1) responses in sensory neurons, but it is not clear whether peripheral inflammation results in the release of endogenous PRL, or whether endogenous PRL is capable of acting as an inflammatory mediator in a sex-dependent manner. To address these questions, we examined inflammation-induced release of endogenous PRL, and its regulation of thermal hyperalgesia in female and male rats. PRL is expressed in several types of peripheral neuronal and non-neuronal cells, including TRPV1-positive nerve fibers, preadipocytes and activated macrophages/monocytes localized in the vicinity of nerves. Evaluation of PRL levels in hindpaws and plasma indicated that complete Freund's adjuvant (CFA) stimulates release of peripheral, but not systemic, PRL within 6-48 h in both ovariectomized females with estradiol replacement (OVX-E) and intact male rats. The time course of release varies in OVX-E and intact male rats. We next employed the prolactin receptor (PRL-R) antagonist Δ1-9-G129R-hPRL to assess the role of locally produced PRL in nociception. Applied at a ratio of 1 : 1 (PRL:Δ1-9-G129R-hPRL; 40 nm each), this antagonist was able to nearly (≈ 80%) reverse PRL-induced sensitization of capsaicin responses in rat sensory neurons. CFA-induced inflammatory thermal hyperalgesia in OVX-E rat hindpaws was significantly reduced in a dose-dependent manner by the PRL-R antagonist at 6 h but not at 24 h. In contrast, PRL contributed to inflammatory thermal hyperalgesia in intact male rats at 24, but not at 6 h. These findings indicate that inflammation leads to accumulation of endogenous PRL in female and male rats. Furthermore, PRL acts as an inflammatory mediator at different time points for female and intact male rats.
Performance of a New Hybrid Artificial Liver Support System Using Hepatocytes Entrapped Within a Hydrogel (1989)

To develop a hybrid artificial liver support system (ALSS), the authors constructed a rotating-disk type ALSS using hepatocytes entrapped within a calcium alginate hydrogel. This module was designed in imitation of the gas-liquid contactor that uses the same principle. Forty disks with film-shaped hydrogel were mounted to a horizontal rotating axis and were kept in contact with blood. The concentration of hepatocytes in the gel varied from 1.9 X 10(9) to 1.7 X 10(10) cells/L gel. Entrapping hepatocytes within hydrogel kept the hepatocytes viable, and results of in vitro experiments showed ammonium metabolism and urea synthesis. The results of ex vivo perfusion experiments using cats with acute hepatic insufficiency indicated that this module had the ability to replace liver function in vivo.
US-guided Percutaneous Cholecystostomy: Features Predicting Culture-Positive Bile and Clinical Outcome (2004)

US variables can be used to predict culture-positive bile but not patient outcome. Clinical manifestation is important because patients with right upper quadrant symptoms have the best clinical outcome.
Optimal Experimental Design of Field Trials using Differential Evolution (2017)

When setting up field experiments, to test and compare a range of genotypes (e.g. maize hybrids), it is important to account for any possible field effect that may otherwise bias performance estimates of genotypes. To do so, we propose a model-based method aimed at optimizing the allocation of the tested genotypes and checks between fields and placement within field, according to their kinship. This task can be formulated as a combinatorial permutation-based problem. We used Differential Evolution concept to solve this problem. We then present results of optimal strategies for between-field and within-field placements of genotypes and compare them to existing optimization strategies, both in terms of convergence time and result quality. The new algorithm gives promising results in terms of convergence and search space exploration.
Lysebehandlung bei retinalen Arterienverschlüssen mit Plasminogen-Aktivator (1991)

Tissue-type plasminogen activator (rt-PA), a gene-technologically manufactured fibrinolytic compound, has been employed successfully for treatment of cardial and peripheral arterial vascular occlusions. The advantage of this compound is its lytic effect. It selectively displays its effect in therapeutic dosage on fresh thrombuses, showing only minimal influence on physiological clotting as such. Two patients with stop of the retinal arterial bloodflow in videofluorescence angiography were treated with short term lysis with 100 mg rt-PA, the onset of therapy was 7 and 6.5 hours after loss of vision. Already during the infusion of the compound reperfusion was achieved. Inspite of the relatively late onset of treatment, the visual fields of both patients improved. We assume lytic therapy with rt-PA to be an effective therapy for patients with retinal arterial occlusion, if applied within the first eight hours after acute loss of vision. The number of patients who could potentially benefit from this therapy is limited considering the high rate of spontaneous reperfusion before the first eye exam in 84% of the cases and considering the manifold contraindications for this therapy: 35% of the patients above 70 years of age, 56% of the patients with arterial hypertension (RR 160/100 and above) as well as 10% of the patients treated with Coumarine-derivatives should not undergo lysis. Only 43% of the patients with occlusion of central retinal artery and 21% of the patients with occlusion of retinal branch arteries received the first eye exam within the first 8 hours after the occlusion.
Influence of Different Biological Environments on Serotonin (5‐HT) Electrochemical Behavior at Gold Screen Printed Electrodes (2014)

Abstract Serotonin is a key neurotransmitter, present in the brain, blood and gastrointestinal tract. Due to the interest in measuring this important biogenic amine in these various environments, electrochemical recordings were carried out in PBS buffer, 0.5 % w/v mucin and 5 % w/v albumin on Screen Printed Gold Electrodes (SPAuEs) bare and modified with gold nanoparticles (AuNps), for better understanding the influence of the matrix on the stability of recordings The results suggest that the proteins resulted protective against electrode fouling, compared to PBS buffer, which enhanced the rate of such a fouling.
Mechanism of hybrid resistance. The role of a natural antibody in parental bone marrow cell rejection (1991)

Hybrid resistance (HR) to parental bone marrow growth is specifically directed against hemopoietic histocompatibility (Hh-1) Ag that are present in parental bone marrow cells (bmc). The mechanism of HR seems to be a multistep process. According to a model we proposed earlier, a T cell recognizes the Hh-1 Ag and stimulates a macrophage to secrete IFN-alpha/beta (recognition phase). IFN-alpha/beta activates a NK-like cell that specifically kills the parental bmc (effector phase). We have also described in a previous paper that serum from resistant F1 hybrids contains a humoral factor that seems to be involved in the effector phase of HR. In the present work, we study the role and the nature of this humoral factor. Our results show that this humoral factor: 1) is present in all resistant H-2Db heterozygous F1 hybrids we have tested but not in nonresistant H-2Db homozygous mice; 2) seems to recognize the Hh-1b Ag because it is absorbed on bmc from Hh-1b mice but not on bmc from Hh-1d and Hh-1- mice; and 3) is an IgG1 Ig (natural antibody). These results could help us to explain the specificity of HR at the effector phase by supposing that this natural antibody recognize the Hh-1 Ag and enable NK-like cells to kill parental bmc cells in Hh-1 specific manner.
Intumescent coating modeling (1975)

A thermal response mathematical model for an intumescent coating system is developed. The model predicts indepth temperature profiles of the solid as a function of the fundamental kinetic, mass, and heat-transfer properties of the original coating system. In the model, swelling is based on an empirical function of the paint's weight loss. The model is used to describe the effectiveness of the coating for thermal protection. Using the thermal response time at the backface of the material as a criterion, a sensitivity analysis is made with respect to variation in individual properties, such as total expansion, to provide a guide for designing improved intumescing agents. The sensitivity analysis shows that total expansion and rate of expansion, along with other material properties, are important parameters for providing thermal protection. Finally, backface temperature histories are predicted and compared to experimental data obtained from a representative fire environment. Predicted temperatures agree within a maximum error of plus or minus 20%.