gebhart/patrepeval huggingface dataset:
High-resolution electron microscopy study of synthetic carbonate and aluminum containing apatites (2000)

Aluminum (Al)-containing calcium-deficient carbonated hydroxyapatites were produced by a precipitation method from aqueous solution with carbonate (0–6.1%) and aluminum (0.1–0.5%) concentrations close to those found in biological materials. Two series of apatites were prepared: one at pH 7.0 and another at pH 9.0. High-resolution electron microscopy has shown that many of them possess structural defects such as screw dislocations, grain boundaries, and central defects. Samples with high carbonate content and high water and high Al3+ content had a high amount of structural defects. Accordingly, a sample (7Al1) with a relatively high carbonate content (6.1%) and a sample (7Al6) without carbonate but with a relatively high water (2.0 mol) and Al3+ content (0.39%) presented the highest amount of structural defects, 54% and 47%, respectively. A sample (7Al13) with a low level of crystalline water (1 mol) and low carbonate (2.5%) showed a small amount of defects. The presence of water associated with Al3+ induced a high number of crystals having a central defect with a great similarity to the so-called water layer of octacalcium phosphate (OCP). Observed images of all these crystals have shown good correspondence with the computer-simulated image based on the crystal structure of hydroxyapatite, indicating that the addition of Al3+ and carbonate does not perturbe the apatitic structure. © 2000 John Wiley & Sons, Inc. J Biomed Mater Res, 50, 199–207, 2000.
Assessment of Savannah River borosilicate glass in the repository environment (1982)

Since 1973, borosilicate glass has been studied as a matrix for the immobilization of high-level radioactive waste generated at the Savannah River Plant (SRP). In 1977, efforts began to develop and test the large-scale equipment necessary to convert the alkaline waste slurries at SRP into a durable borosilicate glass. A process has now been developed for the proposed Defense Waste Processing Facility (DWPF) which will annually produce approximately 500 canisters of SRP waste glass which will be stored on an interim basis on the Savannah River site. Current national policy calls for the permanent disposal of high-level waste in deep geologic repositories. In the repository environment, SRP waste glass will eventually be exposed to such stresses as lithostatic or hydrostatic pressures, radiation fields, and self-heating due to radioactive decay. In addition, producing and handling each canister of glass will also expose the glass to thermal and mechanical stresses. An important objective of the extensive glass characterization and testing programs of the Savannah River Laboratory (SRL) has been to determine how these stresses affect the performance of SRP waste glass. The results of these programs indicate that: these stresses will not significantly affect the performance of borosilicate glass containing SRP waste; and SRP waste glass will effectively immobilize hazardous radionuclides in the repository environment.
Tyrosine phosphorylation of CD6 by stimulation of CD3: augmentation by the CD4 and CD2 coreceptors. (1993)

When T cells are activated via the T cell receptor (TCR) complex a number of cellular substrates, including some cell surface proteins, become phosphorylated on tyrosine (Tyr) residues. Phosphorylation of cytoplasmic Tyr renders these cell surface receptors competent to interact with proteins that link cell surface receptors to protein in the intracellular signaling pathways. Here we show that Tyr residues in the cytoplasmic domain of CD6 become phosphorylated upon T cell activation via the TCR complex. Tyr phosphorylation was observed when the T cells were activated by crosslinking CD3 or by cocrosslinking CD3 with CD2 or CD4, but not when the cells were stimulated by crosslinking CD2, CD4, or CD28 alone. Unlike other Tyr kinase substrates, such as the phospholipase C gamma 1-associated pp35/36 protein, whose level of Tyr phosphorylation is highest when T cells are activated by cocrosslinking CD3 with CD2, the levels of CD6 Tyr phosphorylation are highest when T cells were activated by cocrosslinking CD3 with CD4.
Time- and dose-dependent differential upregulation of three genes by 17β-estradiol in endothelial cells (2002)

The purpose of this study was to identify genetic targets in the vasculature for estrogen by profiling genes expressed in female human aortic endothelial cells exposed to various doses of 17 beta-estradiol at differing concentrations and for differing periods of time. Our approach employed a RT-PCR-based cloning strategy of DNA differential display analysis, with differential expression verified by semiquantitative PCR performed with gene-specific primers. A significant increase in mRNA expression in response to 17 beta-estradiol was observed for the following three genes: aldose reductase (3.4-fold), caspase homologue-alpha protein (4.2-fold), and plasminogen activator inhibitor-1 intron e (2.3-fold). For all three upregulated genes, estradiol-induced upregulation occurred with a similar time course and temporally clustered to the first 24 h after hormone treatment. In addition, the effect of estradiol dose on gene expression was consistent and occurred at physiological concentrations. Our results describe previously uncharacterized estradiol-sensitive time- and dose-dependent regulation of genes with potential importance to vascular function in human endothelial cells.
Impedimetric detection of influenza A (H1N1) DNA sequence using carbon nanotubes platform and gold nanoparticles amplification (2010)

In this work we report the use of an impedimetric genosensor for the model detection of H1N1 swine flu correlated DNA sequence. An oligonucleotide DNA probe, complementary to the target H1N1 virus sequence, was immobilized onto the electrode surface by covalent binding. Two different protocols, i.e. direct hybridization with the DNA target and a sandwich scheme, were employed and compared. In both cases the resulting hybrid was biotin-labelled to allow the additional conjugation with streptavidin gold nanoparticles (strept-AuNPs). The latter were used with the aim of enhancing the impedimetric signal, thus improving the sensitivity of the technique. The best limit of detection, obtained with the sandwich scheme after signal amplification step was 7.5 fmol (corresponding to 577 pmol L(-1)). Furthermore, a gold enhancement treatment was performed in order to compare the presence and distribution of gold nanoparticles onto the electrode surface. As an alternative way of visualization, streptavidin conjugate quantum dots (strept-QD) were employed to obtain fluorescence images of the DNA-biotin-strept-QD electrode surface. Finally, a comparison between impedance and microscopy was performed in terms of viability and feasibility of the techniques.
Pendrin Transporter Carries Out Iodide Uptake into MCF-7 Human Mammary Cancer Cells (2003)

Previous studies have shown that iodide is actively taken up into mammary alveolar epithelial cells and secreted into milk. In the present studies we demonstrate that 125I also accumulates in MCF-7 cells against a concentration gradient; distribution ratios of greater than 30 were achieved. Iodide uptake into MCF-7 cells is transient, with peak accumulations occurring in about 5 min. The iodide is rapidly metabolized, probably to iodine, and it then exits the cells. The iodide transporter identified in MCF-7 cells is pendrin. DIDS, a nonspecific inhibitor of anion exchange, inhibits iodide uptake. Iodide uptake is impaired at reduced temperature, but is not dependent on sodium. Inhibitors of the sodium-iodide symporter (NIS) as well as ouabain did not affect the extent of iodide uptake. The pendrin transporter but not NIS was identified via western blotting techniques. Pendrin appears to be the primary iodide transporter in the MCF-7 cell line stocks that were employed for these studies.
Quantitative Evaluation of Hair Texture (2015)

In this paper, we quantitatively evaluate the role of texture in hair patches, with a primary motivation of understanding what can be learned and applied by machine learning systems for texture-based hair detection. We evaluate the distribution of gradient directions in hair patches, and explore the relation between proximity to the face and the angle of the gradients for 2,870,000 hair patches selected from 100 manually silhouetted hairstyles.
Defining the Molecular Basis for the First Potent and Selective Orthosteric Agonists of the FFA2 Free Fatty Acid Receptor (2013)

FFA2 is a G protein-coupled receptor that responds to short chain fatty acids and has generated interest as a therapeutic target for metabolic and inflammatory conditions. However, definition of its functions has been slowed by a dearth of selective ligands that can distinguish it from the closely related FFA3. At present, the only selective ligands described for FFA2 suffer from poor potency, altered signaling due to allosteric modes of action, or a lack of function at non-human orthologs of the receptor. To address the need for novel selective ligands, we synthesized two compounds potentially having FFA2 activity and examined the molecular basis of their function. These compounds were confirmed to be potent and selective orthosteric FFA2 agonists. A combination of ligand structure-activity relationship, pharmacological analysis, homology modeling, species ortholog comparisons, and mutagenesis studies were then employed to define the molecular basis of selectivity and function of these ligands. From this, we identified key residues within both extracellular loop 2 and the transmembrane domain regions of FFA2 critical for ligand function. One of these ligands was active with reasonable potency at rodent orthologs of FFA2 and demonstrated the role of FFA2 in inhibition of lipolysis and glucagon-like peptide-1 secretion in murine-derived 3T3-L1 and STC-1 cell lines, respectively. Together, these findings describe the first potent and selective FFA2 orthosteric agonists and demonstrate key aspects of ligand interaction within the binding site of FFA2 that will be invaluable in future ligand development at this receptor.
Two Monoclonal Antibodies Recognizing Carbohydrate Epitopes on Neural Adhesion Molecules Interfere with Cell Interactions (1990)

We have studied two monoclonal antibodies raised against crude fractions of membrane glycoproteins from adult mouse brain and found them to react with two carbohydrate epitopes expressed on several neural cell adhesion molecules. Other identified and unidentified glycoproteins from different cell types, organs and species were also recognized by these antibodies. Both epitopes are N-glycosidically linked mannosidic or hybrid type oligosaccharides and co-expressed on all the glycoproteins so far tested. In spite of their remarkable similarities, the glycan epitopes are different as shown by ELISA competition assays. In microexplant outgrowth and cell adhesion assays, both antibodies interfere with neural cell adhesion, migration, and neurite outgrowth. These observations, together with previous studies on the L2/HNK-1 glycan (Künemund et al., 1988), indicate that adhesion molecules carry various carbohydrate epitopes mediating different cell interactions in in vitro assays.
3-D-Gesichtserkennung für die unbeaufsichtigte Grenzkontrolle (2008)

Seit November 2005 sind biometrische Daten in allen neu ausgestellten deutschen Reisepässen integriert. Die zusätzliche Nutzung von dreidimensionalen Modellen verspricht erhebliche Leistungssteigerungen für die Grenzkontrolle. Durch die Kombination von Informationen zur Geometrie sowie zur Gesichtstextur können 3-DGesichtserkennungssysteme Posenvariationen und schwierige Lichtverhältnisse bei der Aufnahme besser verarbeiten. Um das Potenzial der dreidimensionalen Gesichtserkennung zu ermitteln, wurde das durch die Europäische Kommission im 6. Forschungsrahmenprogramm geförderte Projekt 3D Face in Leben gerufen. Der Beitrag beschreibt den Ansatz und die Forschungsziele in diesem Projekt: So sollen nicht nur bessere Erkennungsleistungen erzielt, sondern auch eine neue, fälschungssichere Aufnahmetechnik entwickelt werden. Zudem wird an Verfahren gearbeitet, die gespeicherte Template-Daten in der biometrischen Referenz schützen.
Design, Fabrication and Measurements of Reliable Low Voltage RF-MEMS Switched Varactors (2011)

International audience
Ellipsometric Study of Monodisperse Silica Particles at an Oil−Water Interface (2003)

Results are reported for ellipsometric measurements of hydrophobized monodisperse silica particles, with a diameter of about 25 nm, spread at the toluene-water interface. Theoretical values for the ellipsometric parameters are derived by treating the particles as a core-shell model and performing integrations of the refractive index profile through the interface using Drude's equations. With justifiable choices of the fixed parameters for the system, the agreement is good between measured and calculated values for the ellipsometric parameter Δ as a function of the amount of silica particles added to the interface. However, the results at high particle concentration at the interface are consistent either with coverage greater than a close-packed monolayer or with a monolayer with corrugations whose amplitude is less than the radius of the particles. The results show that this is not a suitable method for the determination of the contact angle of the particles at the oil-water interface.
Age dependent production of a competence factor by human fibroblasts (1983)

Abstract Several cell types such as Balb/c 3T3 have been shown to require platelet‐derived growth factor (PDGF); however, strains of human fibroblasts from fetal donors have been shown to divide in medium containing plasma free of PDGF. Since human fibroblasts have been demonstrated to secrete other peptide growth factors such as somatomedin‐C, we have undertaken a study to determine if fibroblasts derived from fetal donors are capable of producing a mitogen(s) which will substitute for PDGF and support growth in plasma alone. Quiescent human fibroblasts from donors ages 12‐wk embryo, newborn, and 3‐yr‐old were exposed to serum‐free minimum essential medium (MEM) for 24 hr. The conditioned media collected from embryonic and newborn fibroblast donors were demonstrated to stimulate growth in the 3‐yr‐old cells with the addition of plasma alone, whereas conditioned medium from the 3‐yr‐old donor cells was without effect. The increases in growth and DNA synthesis were dependent upon concentration of media used. Conditioned medium derived from newborn fibroblasts also supported 3‐yr‐old cell growth but embryonic conditioned medium was more potent. The embryonic conditioned medium factor was heat and acid stable but destroyed by trypsin and excluded by a 5,000 (MW) molecular weight filter. The factor(s) had full competence factor activity since transient exposure to fibroblasts (3‐yr‐old donor) stimulated 78% nuclear labeling vs. 81% with continuous exposure. These results support the concept that there is an age‐dependent production of a competence factor by human fibroblasts which may partially account for their capacity to grow in medium devoid of PDGF and supplemented with plasma alone.
Characterization of Desulfovibrio biadhensis sp. nov., isolated from a thermal spring (2015)

A novel anaerobic, mesophilic, slightly halophilic sulfate-reducing bacterium, designated strain Khaled BD4(T), was isolated from waters of a Tunisian thermal spring. Cells were vibrio-shaped or sigmoids (5-7×1-1.5 µm) and occurred singly or in pairs. Strain Khaled BD4(T) was Gram-stain-negative, motile and non-sporulated. It grew at 25-45 °C (optimum 37 °C), at pH 5.5-8.3 (optimum pH 7.0) and with 0.5-8% NaCl (optimum 3%). It required vitamins or yeast extract for growth. Sulfate, thiosulfate, sulfite and elemental sulfur served as terminal electron acceptors, but not fumarate, nitrate or nitrite. Strain Khaled BD4(T) utilized H2 in the presence of 2 mM acetate (carbon source), but also lactate, formate, pyruvate and fumarate in the presence of sulfate. Lactate was incompletely oxidized to acetate. Amongst substrates used, only pyruvate was fermented. Desulfoviridin and c-type cytochrome were present. The G+C content of the DNA was 54.6 mol%. The main fatty acids were anteiso -C(15 : 0), iso-C(18 : 0), iso-C(17 : 0) and iso-C(14 : 0). Phylogenetic analysis of the 16S rRNA gene sequence indicated that strain Khaled BD4(T) had Desulfovibrio giganteus DSM 4123(T) (96.7% similarity) as its closest phylogenetic relative. On the basis of 16S rRNA gene sequence comparisons together with genetic and physiological characteristics, strain Khaled BD4(T) is assigned to a novel bacterial species, for which the name Desulfovibrio biadhensis sp. nov. is proposed. The type strain is Khaled BD4(T) ( = DSM 28904(T) = JCM 30146(T)).
Spacecraft Angular Rate Estimation Algorithms For Star Tracker-Based Attitude Determination (2003)

In this paper, two different algorithms are presented for the estimation of spacecraft body angular rates in the absence of gyro rate data for a star tracker mission. In first approach, body angular rates are estimated with the spacecraft attitude using a dynamical model of the spacecraft. The second approach makes use of a rapid update rate of star camera to estimate the spacecraft body angular rates independent of spacecraft attitude. Essentially the image flow of the stars is used to establish a Kalman filter for estimating the angular velocity. The relative merits of both the algorithms are then studied for the spacecraft body angular rates measurements. The second approach has an advantage of being free from any bias in attitude estimates.
Studies on Polypeptides. XXVIII. Elimination of the Methionine Residue as an Essential Functional Unit for <i>in Vivo</i> Adrenocorticotropic Activity<sup>1-4</sup> (1964)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTStudies on Polypeptides. XXVIII. Elimination of the Methionine Residue as an Essential Functional Unit for in Vivo Adrenocorticotropic Activity1-4Klaus. Hofmann, Joachim. Rosenthaler, Robert D. Wells, and Haruaki. YajimaCite this: J. Am. Chem. Soc. 1964, 86, 22, 4991–4999Publication Date (Print):November 1, 1964Publication History Published online1 May 2002Published inissue 1 November 1964https://pubs.acs.org/doi/10.1021/ja01076a052https://doi.org/10.1021/ja01076a052research-articleACS PublicationsRequest reuse permissionsArticle Views39Altmetric-Citations20LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
ChemInform Abstract: SYNTHESIS OF RAC‐2‐CYANO‐1‐METHYL‐3‐(2‐((4,5,6,7‐TETRAHYDRO‐4‐BENZIMIDAZOLYL)THIO)ETHYL)GUANIDINE, A CONFORMATIONALLY RESTRICTED CIMETIDINE ANALOG (1979)

Abstract Reduktion des Imidazols (I) unter milden Bedingungen liefert den rac. Alkohol (II), der mit dem Thiolamin (III) zum Amin (IV) kondensiert wird.
Prevalence of Antiretroviral Drug Resistance in Treated HIV-1 Infected Patients: Under the Initiative of Access to the NNRTI-Based Regimen in Thailand (2007)

To determine the prevalence of antiretroviral resistance in treatment-failure HIV-1 infected individuals, under the initiative of the non-nucleoside reverse transcriptase inhibitor (NNRTI)-based regimen in Thailand, plasma samples were collected from 1,376 HIV-1 infected patients, who were failing in their current HAART therapy during 2000-2004. They were stratified into 2 intervals: group one (1), 558 HIV-1 infected patients (2000-2002; before the initiative of access to HAART), and group two (2), 818 HIV-1 infected patients (2003-2004; after the initiative of access to HAART). Genotypic resistance testing was performed. The frequency of antiretroviral drug resistance in treatment-failure HIV-1 infected patients has significantly increased over time from 68.5% (382/558) during 2000-2002 to 74.9% (613/818) during 2003-2004 (P<0.01). Resistance to NNRTI during 2003-2004 (59.2%) was much higher than that during 2000-2002 (36.9%; P<0.001). However, the frequency of nucleoside reverse transcriptase inhibitor (NRTI) drug resistance was not significantly higher (P=0.153). We showed that this correlated with an increase in the NNRTI-based regimen prescribed during 2003-2004, especially the Thai-produced combination pill, GPO-VIR. Our finding also showed that a high level of genotypic drug resistance is associated with GPO-VIR (40.8% lamivudine, 40.6% stavudine, 43.8% nevirapine). In order to avoid the rapid emergence of resistant viruses in a resource-poor setting, a close surveillance of antiretroviral drug resistance is feasible and should be considered.
Yucca Mountain drift scale test progress report (1999)

The Drift Scale Test (DST) is part of the Exploratory Studies Facility (ESF) Thermal Test being conducted underground at the potential high-level nuclear waste repository at Yucca Mountain, Nevada. The purpose of the ESF Thermal Test is to acquire a more in-depth understanding of the coupled thermal, mechanical, hydrological, and chemical processes likely to be encountered in the rock mass surrounding the potential geological repository at Yucca Mountain. These processes are monitored by a multitude of sensors to measure the temperature, humidity, gas pressure, and mechanical displacement, of the rock formation in response to the heat generated by the heaters. In addition to collecting passive monitoring data, active hydrological and geophysical testing is also being carried out periodically in the DST. These active tests are intended to monitor changes in the moisture redistribution in the rock mass, to collect water and gas samples for chemical and isotopic analysis, and to detect microfiacturing due to heating. On December 3, 1998, the heaters in the DST were activated. The planned heating phase of the DST is 4 years, and the cooling phase following the power shutoff will be of similar duration. The present report summarizes interpretation and analysis of thermal, hydrological, chemical, and geophysical data for the first 6 months; it is the first of many progress reports to be prepared during the DST.