gebhart/patrepeval huggingface dataset:
The Influence of Denier and Porosity on Performance of a Warp-knit Dacronβ Arterial Prosthesis (1986)

The study objective was to determine the optimal water porosity for a warp-knit, externally veloured Dacron arterial prosthesis. Preclotting efficiency, surgical handling characteristics, thrombogenicity, and 56-day healing in the descending thoracic aorta of mongrel dogs were measured for seven different arterial prostheses of the same basic design constructed to test the influence of decreased porosity produced by increased yarn denier at a constant needle density. The six prototypes tested were 160, 180, 200, 220, 240, and 280 denier. The 140 denier prosthesis (Bionit, C. R. Bard, Inc., Billerica, MA) served as the control. The water porosity of these prostheses varied from 2036 ml/cm2/min at 120 mmHg for the control to 286 for the 280 prototype. The preclotting efficiency increased with decreased water porosity and with increased outer-wall filamentousness. Desirability of surgical handling characteristics decreased with lowered water porosity, while the degree of outer-wall filamentousness had little influence. All the prostheses showed excellent through-wall healing at 56 days, including endothelialization. The 160 prototype represented an optimal blend of high preclotting efficiency, desirable surgical handling characteristics, and excellent 56-day healing. These studies are pertinent to the future development of porous, warp-knit Dacron arterial prostheses.
Micromachining of a fiber-to-waveguide coupler using grayscale lithography and through-wafer etch (2008)

For some time, the micro-optics and photonics fields have relied on fabrication processes and technology borrowed from the well-established silicon integrated circuit industry. However, new fabrication methodologies must be developed for greater flexibility in the machining of micro-optic devices. To this end, we have explored grayscale lithography as an enabler for the realization of such devices. This process delivers the ability to sculpt materials arbitrarily in three dimensions, thus providing the flexibility to realize optical surfaces to shape, transform, and redirect the propagation of light efficiently. This has opened the door for new classes of optical devices. As such, we present a fiber-to-waveguide coupling structure utilizing a smoothly contoured lensing surface in the device layer of a silicon-on insulator (SOI) wafer, fabricated using grayscale lithography. The structure collects light incident normally to the wafer from a singlemode optical fiber plugged through the back surface and turns the light into the plane of the device layer, focusing it into a single-mode waveguide. The basis of operation is total internal reflection, and the device therefore has the potential advantages of providing a large bandwidth, low polarization sensitivity, high efficiency, and small footprint. The structure was optimized with a simulated annealing algorithm in conjunction with two-dimensional finite-difference time-domain (FDTD) simulation accelerated on the graphics processing unit (GPU), and achieves a theoretical efficiency of approximately seventy percent, including losses due to Fresnel reflection from the oxide/silicon interface. Initial fabrication results validate the principle of operation. We discuss the grayscale fabrication process as well as the through-wafer etch for mechanical stabilization and alignment of the optical fiber to the coupling structure. Refinement of the through-wafer etch process for high etch rate and appropriate sidewall taper are addressed.
Crosstalk among stress responses in plants: Pathogen defense overrides UV protection through an inversely regulated ACE/ACE type of light-responsive gene promoter unit (2002)

Plants often have to cope with two or more environmental hazards simultaneously. Such coincidences require instantaneous decisions on relative severity and consequential crosstalk between the respective signaling cascades. Among the frequently encountered threats are pathogen infections and UV irradiation, both of which trigger specifically targeted defense responses by means of changes in gene transcription rates. In Petroselinum crispum, pathogen defense has been shown to be associated with extensive metabolic reprogramming, including strong repression of the UV-protective flavonoid biosynthetic pathway. Here we show that one of the involved genes, encoding acyl-CoA oxidase, responds positively to UV light and negatively to a pathogen-derived elicitor through an inversely regulated promoter unit consisting of two almost identical ACGT-containing elements (ACEs). This unit, when either introduced into an unrelated promoter or generated by mutation of a differently composed unit, confers the same type of response pattern on the recipient genes, confirming its general functionality at a convergence site of two largely distinct signaling pathways. Similarly large, rapid, and partly inverse effects of UV light and elicitor were observed for several mRNAs encoding common plant regulatory factors (CPRFs) that exhibit distinct dimerization and DNA-binding properties. This striking coincidence suggests a major role of common plant regulatory factors in mediating the apparent switch in the function of ACGT-containing elements from positive UV light to negative elicitor or pathogen responsiveness.
COMPLEXITY REDUCTION OF REAL-TIME DEPTH SCANNING ON GRAPHICS HARDWARE (2009)

This paper presents an intelligent control loop add-on to reduce the total amount of hardware operations - and therefore the resulting execution speed - of a real-time depth scanning algorithm. The analysis module of the control loop predicts redundant brute-force operations, and dynamically adjusts the input parameters of the algorithm, to avoid scanning in a space that lacks the presence of objects. Therefore, this approach reduces the algorithmic complexity in proportion with the amount of void within the scanned volume, while remaining fully compliant with stream-centric paradigms such as CUDA and Brook+.
Worst Practices for Domain-Specific Modeling (2009)

Interest in creating domain-specific modeling (DSM) languages is surging, but little guidance is available on how to do it right. Along with heeding best practices, learning what not to do-including how to handle common pitfalls and recognize troublesome areas-can help first-time developers. The authors have identified several worst practices based on an analysis of 76 DSM cases spanning 15 years, four continents, several tools, around 100 language creators, and projects with from three to more than 300 modelers. They present these worst practices in the order that language developers would encounter them over the life of a project.
Evaluation of Hydraulic Performance Characteristics of a Newly Designed Dynamic Fluidic Sprinkler (2018)

A newly designed dynamic fluidic sprinkler was tested with different types of nozzles at different operating pressures. Therefore, the aim of this paper was to evaluate the hydraulic performance of a newly designed dynamic fluidic sprinkler. MATLAB R2014a software was employed to establish the computational program for the computed uniformity. Droplet sizes were determined using a Thies Clima Laser Precipitation Monitor. Results showed that the nozzle with a diameter of 5.5 mm gave the highest coefficient of uniformity value of 86% at a low pressure of 150 kPa. The comparison of water distribution profiles for the nozzle sizes (2, 3, 4, 5.5, 6 and 7 mm) at different operating pressures (100, 150, 200, 250 and 300 kPa) showed that a 5.5-mm nozzle size produced a parabola-shaped profile at 150 kPa. The mean droplet diameters for the nozzles sizes of 2, 3, 4, 5.5, 6 and 7 mm ranged from 0 to 4.2, 0 to 3.7, 0 to 3.6, 0 to 3.2, 0 to 0.5 and 0 to 3.8 mm, respectively. The comparison of droplet size distributions showed that 5.5 mm had the optimum droplet diameter of 3.2 mm. The largest droplet sizes had a maximum value of 4.0 for a 2-mm nozzle size. For all the nozzles sizes, 5.5 mm produced better results for hydraulic performance, which can significantly improve the performance and save water for crop production in sprinkler-irrigated fields.
NERD: Network Event Recording Device: an automated system for network anomaly detection and notification (2002)

The Network Event Recording Device is an automated, real-time system for monitoring and detecting network anomalies, as well as providing timely notification to network managers of significant network events. The NERD system allows for continuous monitoring of system and security logs, easily configurable notification options and a central, secure data collection point for distributed system logs.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Neu Perspectives, Therapies, and Challenges for Metastatic HER2-Positive Breast Cancer (2021)

Even though gene amplification or protein overexpression occurs in approximately one-fifth of all breast cancers, the discovery of <i>HER2</i> has, nevertheless, had profound implications for the disease. Indeed, the characterization of the receptor resulted in a number of significant advances. Structurally, unique features provided avenues for the development of numerous compounds with target-specificity; molecularly, biological constructs revealed a highly complex, internal signal transduction pathway with regulatory effects on tumor proliferation, survival, and perhaps, even resistance; and clinically, disease outcomes manifested its predictive and prognostic value. Yet despite the receptor's utility, the beneficial effects are diminished by tumor recurrence after neo- or adjuvant therapy as well as losses resulting from the inability to cure patients with metastatic disease. What these observations suggest is that while tumor response may be partially linked to uncoupling cell surface message reception and nuclear gene expression, as well as recruitment of the innate immune system, disease progression and/or resistance may involve a reprogrammable signaling mainframe that elicits alternative growth and survival signals. This review attempts to meld current perceptions related to HER2-positive metastatic breast cancer with particular attention to current biological insights and therapeutic challenges.
Dendritic Cell‐Based Immunotherapy for Prostate Cancer (2010)

Dendritic cells (DCs) are professional antigen-presenting cells (APCs), which display an extraordinary capacity to induce, sustain, and regulate T-cell responses providing the opportunity of DC-based cancer vaccination strategies. Thus, clinical trials enrolling prostate cancer patients were conducted, which were based on the administration of DCs loaded with tumor-associated antigens. These clinical trials revealed that DC-based immunotherapeutic strategies represent safe and feasible concepts for the induction of immunological and clinical responses in prostate cancer patients. In this context, the administration of the vaccine sipuleucel-T consisting of autologous peripheral blood mononuclear cells including APCs, which were pre-exposed in vitro to the fusion protein PA2024, resulted in a prolonged overall survival among patients with metastatic castration-resistant prostate cancer. In April 2010, sipuleucel-T was approved by the United States Food and Drug Administration for prostate cancer therapy.
aV integrins and TGF‐β‐induced EMT: a circle of regulation (2011)

Transforming growth factor-β (TGF-β) has roles in embryonic development, the prevention of inappropriate inflammation and tumour suppression. However, TGF-β signalling also regulates pathological epithelial-to-mesenchymal transition (EMT), inducing or progressing a number of diseases ranging from inflammatory disorders, to fibrosis and cancer. However, TGF-β signalling does not proceed linearly but rather induces a complex network of cascades that mutually influence each other and cross-talk with other pathways to successfully induce EMT. Particularly, there is substantial evidence for cross-talk between αV integrins and TGF-β during EMT, and anti-integrin therapeutics are under development as treatments for TGF-β-related disorders. However, TGF-β's complex signalling network makes the development of therapeutics to block TGF-β-mediated pathology challenging. Moreover, despite our current understanding of integrins and TGF-β function during EMT, the precise mechanism of their role during physiological versus pathological EMT is not fully understood. This review focuses on the circle of regulation between αV integrin and TGF-β signalling during TGF-β induced EMT, which pose as a significant driver to many known TGF-β-mediated disorders.
Evaluation of Biolog system for identification of some gram-negative bacteria of clinical importance (1994)

The Biolog system (Biolog, Inc., Hayward, Calif.) was evaluated for the identification of 55 gram-negative taxa (789 strains) likely to be encountered commonly in clinical laboratories. The Biolog system performed best with oxidase-positive fermenters and biochemically active nonfermenters and had the most problems with unreactive nonfermenters. It gave significantly better results when the MicroPlates were read manually rather than when they were read by the automated reader. Plates read manually gave the following performances: oxidase-positive fermenters, five taxa, 64 strains, 92% correct, 3% not identified, and 5% incorrect; biochemically active nonfermenters, eight taxa, 122 strains, 88% correct, 6% not identified, and 6% incorrect; members of the family Enterobacteriaceae, 35 taxa, 511 strains, 77% correct, 8% not identified, and 15% incorrect; unreactive nonfermenters, seven taxa, 92 strains, 38% correct, 24% not identified, and 38% incorrect. We found the system easy to use, but while for 39 of 55 of the taxa an identification rate of > 70% was achieved, problems were encountered, particularly with identification of capsulated strains of some Enterobacter and Klebsiella taxa, as well as the least biochemically active Moraxella and Neisseria strains.
Ecological modernisation theory in debate: A review (2000)

Ecological Modernisation Theory has been faced with various challenges from different theoretical perspectives throughout the years. This contribution reviews the various debates ecological modernisation ideas have been engaged in. The article starts with a historical perspective on some of the earlier debates that paralleled Ecological Modernisation from its birth in the early 1980s to its maturation. These initial debates with earlier neo‐Marxists and deindustrialisation/counterproductivity theorists were formative for Ecological Modernisation Theory, but are no longer all of similar relevance today. Subsequently we concentrate on more contemporary discussions, which only to some extent reflect similar topics. We will respectively enter into discussions with constructivists and postmodernists on the material foundation of social theory, review and refine the controversies with eco‐centrists on radical versus reformist environmental reforms and contribute to neo‐Marxist understanding of social inequalities in environmental problems and reform.
Idiotype-antiidiotype regulation. V. The requirement for immunization with antigen or monoclonal antiidiotypic antibodies for the activation of beta 2 leads to 6 and beta 2 leads to 1 polyfructosan-reactive clones in BALB/c mice treated at birth with minute amounts of anti-A48 idiotype antibodies. (1983)

The anti-beta 2 leads to 6 fructosan antibodies sharing the idiotypes (Id) of ABPC48 (A48) monoclonal protein represent a silent fraction of the anti-beta 2 leads to 6 fructosan repertoire, since these antibodies cannot be detected during a conventional immune response elicited by bacterial levan (BL). However, the administration at birth of minute amounts of anti-A48 Id antibodies causes a long-lasting activation of A48 Id+-bearing clones. This activation is related to direct interaction of anti-A48 Id antibodies with precursors bearing the A48 Id+ immunoglobulin receptor, since an A48 Id+ response can be transferred with highly purified B cells in lethally irradiated mice. The maturation of these precursors into A48 Id+ anti-beta 2 leads to 6 fructosan antibody-secreting cells requires challenge by the antigen. Isoelectric focusing (IEF) data showed that in 1-mo-old mice an UPC10 (U10)-like spectrotype was observed, whereas in 3-mo-old mice, a new spectrotype binding BL rather than inulin (In) was identified. This spectrotype was observed only in CXBJ mice, the single strain in which an A48 Id+ response was observed. The antigenic challenge can be replaced by a monoclonal anti-A48 Id antibody (i.e., 17-38). Interestingly, in 1-mo-old BALB/c mice treated with anti-A48 Id antibodies, the challenge with 17-38 monoclonal antibody led to the activation of A48 Id- anti-beta 2 leads to 6 fructosan-reactive clones with BALB/c type IEF spectrotypes, whereas in 3-mo-old BALB/c mice treated with anti-A48 Id antibodies, the challenge with 17-38 monoclonal antibody led to the activation of W3082 IdX+ anti-beta 2 leads to 6 and beta 2 leads to 1 fructosan-reactive clones. In these animals, inhibition of A48 Id+ anti-beta 2 leads to 6 fructosan clones was observed. This antibody probably represents a homobody carrying the internal image of the antigen, which through its paratope suppresses the A48 Id+ response and through its Id activates an A48 Id- anti-beta 2 leads to 6 fructosan response in 1-mo-old mice and in 3-mo-old mice leads to an anti-beta 2 leads to 6 and beta 2 leads to 1 fructosan response dominated by the W3082 IdX.(ABSTRACT TRUNCATED AT 400 WORDS)
Shear‐dependent ‘stick‐and‐roll’ adhesion of type 1 fimbriated <i>Escherichia coli</i> (2004)

It is generally assumed that bacteria are washed off surfaces as fluid flow increases because they adhere through 'slip-bonds' that weaken under mechanical force. However, we show here that the opposite is true for Escherichia coli attachment to monomannose-coated surfaces via the type 1 fimbrial adhesive subunit, FimH. Raising the shear stress (within the physiologically relevant range) increased accumulation of type 1 fimbriated bacteria on monomannose surfaces by up to two orders of magnitude, and reducing the shear stress caused them to detach. In contrast, bacterial binding to anti-FimH antibody-coated surfaces showed essentially the opposite behaviour, detaching when the shear stress was increased. These results can be explained if FimH is force-activated; that is, that FimH mediates 'catch-bonds' with mannose that are strengthened by tensile mechanical force. As a result, on monomannose-coated surfaces, bacteria displayed a complex 'stick-and-roll' adhesion in which they tended to roll over the surface at low shear but increasingly halted to stick firmly as the shear was increased. Mutations in FimH that were predicted earlier to increase or decrease force-induced conformational changes in FimH were furthermore shown here to increase or decrease the probability that bacteria exhibited the stationary versus the rolling mode of adhesion. This 'stick-and-roll' adhesion could allow type 1 fimbriated bacteria to move along mannosylated surfaces under relatively low flow conditions and to accumulate preferentially in high shear regions.
Epidural Anesthesia, Hypotension, and Changes in Intravascular Volume (2004)

Thoracic epidural anesthesia per se does not lead to changes in blood volumes despite a reduction in blood pressure. When fluid is infused, there is a dilution, and the fluid initially seems to be located centrally. Because administration of hydroxyethyl starch and ephedrine has similar hemodynamic effects, the latter may be preferred in patients with cardiopulmonary diseases in which perioperative fluid overload is undesirable.
Genetic Control of Programmed Cell Death in <i>Drosophila</i> (1994)

A gene, reaper (rpr), that appears to play a central control function for the initiation of programmed cell death (apoptosis) in Drosophila was identified. Virtually all programmed cell death that normally occurs during Drosophila embryogenesis was blocked in embryos homozygous for a small deletion that includes the reaper gene. Mutant embryos contained many extra cells and failed to hatch, but many other aspects of development appeared quite normal. Deletions that include reaper also protected embryos from apoptosis caused by x-irradiation and developmental defects. However, high doses of x-rays induced some apoptosis in mutant embryos, and the resulting corpses were phagocytosed by macrophages. These data suggest that the basic cell death program is intact although it was not activated in mutant embryos. The DNA encompassed by the deletion was cloned and the reaper gene was identified on the basis of the ability of cloned DNA to restore apoptosis to cell death defective embryos in germ line transformation experiments. The reaper gene appears to encode a small peptide that shows no homology to known proteins, and reaper messenger RNA is expressed in cells destined to undergo apoptosis.
Buckling beam micromechanical memory with on-chip readout (2009)

We have used double clamped beams to implement a mechanical memory. Compressive stress is generated by resistive heating of the beams and beyond the buckling limit the bistable regime is accessed. Bits are written by applying lateral electrostatic forces. The state of the beam is read out by measuring the capacitance between beam and electrodes. Two ways to implement a mechanical memory are discussed: compensation of initial beam imperfections and snap through of the postbuckled beam. Although significant relaxation effects are observed, both methods prove reliable over thousands of write cycles.
Multioctave midinfrared supercontinuum generation in suspended-core chalcogenide fibers (2014)

An As2S3 fiber-based supercontinuum source that covers 3500 nm, extending from near visible to the midinfrared, is successfully reported by using a 200-fs-pulsed pump with nJ-level energy at 2.5 μm. The main features of our fiber-based source are two-fold. On the one hand, a low-loss As2S3 microstructured optical fiber has been fabricated, with typical attenuation below 2 dB/m in the 1-4 μm wavelength range. On the other hand, a 20-mm-long microstructured fiber sample is sufficient to enable a spectral broadening, spreading from 0.6 to 4.1 μm in a 40 dB dynamic range.
Mechanisms of Fatty Acid and Triglyceride Dispersant Bonding in Non‐Aqueous Dispersions of <scp> <scp>NiO</scp> </scp> (2013)

Infrared spectroscopy was used to identify the mechanism of fatty acid and triglyceride dispersant bonding to NiO in 2‐butanol for a series of triglyceride and straight chain fatty acid dispersants with systematically varied chain lengths and degrees of unsaturation. The extent of NiO deflocculation was measured using laser diffraction particle size analysis. The relative stabilities of the fatty acid/ NiO dispersions were assessed through settling tests. Diffuse reflectance infrared spectroscopy indicates that the straight chain fatty acids chemisorb to NiO as alkoxides with most of the adsorbed moieties in an η 2 configuration. A small fraction of the adsorbed straight chain fatty acids are either chemisorbed through the hydroxyl oxygen in an η 1 configuration or physisorbed as dimers. Glycerol trioleate and Menhaden fish oil both exhibit some chemisorption through the carbonyl oxygen. Despite similarities in adsorption mechanism, the dispersants differ in their abilities to break up NiO aggregates and to prevent re‐aggregation. Dispersant characteristics favoring stability of the NiO /2‐butanol dispersion are longer carbon chain length and higher degree of unsaturation. The triglyceride structure provides a weak improvement in stability. These results are discussed in the context of recent work developing non‐aqueous inks for inkjet printing of solid oxide fuel cells.