gebhart/patrepeval huggingface dataset:
Empirical Mode Decomposition and Hilbert Spectral Analysis (1998)

The difficult facing data analysis is the lack of method to handle nonlinear and nonstationary time series. Traditional Fourier-based analyses simply could not be applied here. A new method for analyzing nonlinear and nonstationary data has been developed. The key part is the Empirical Mode Decomposition (EMD) method with which any complicated data set can be decomposed into a finite and often small number of Intrinsic Mode Functions (IMF) that serve as the basis of the representation of the data. This decomposition method is adaptive, and, therefore, highly efficient. The IMFs admit well-behaved Hilbert transforms, and yield instantaneous energy and frequency as functions of time that give sharp identifications of imbedded structures. The final presentation of the results is an energy-frequency-time distribution, designated as the Hilbert Spectrum. Among the main conceptual innovations is the introduction of the instantaneous frequencies for complicated data sets, which eliminate the need of spurious harmonics to represent nonlinear and nonstationary signals. Examples from the numerical results of the classical nonlinear equation systems and data representing natural phenomena are given to demonstrate the power of this new method. The classical nonlinear system data are especially interesting, for they serve to illustrate the roles played by the nonlinear and nonstationary effects in the energy-frequency-time distribution.
Fast Turbine Valving (1973)

The fact that, as a matter of necessity, power system steam turbines are in all cases equipped with control systems which include provision to close steam inlet valves rapidly on sudden loss of load as a way to suitably limit speed increase, implies that these systems are basically not difficult to modify so as to allow employment of fast valving as a way to maintain system stability despite the occurrence of a line fault or some other system stability endangering event.
Nanostructure‐Initiator Mass Spectrometry (NIMS) for the Analysis of Enzyme Activities (2012)

Abstract Enzymes are essential to innumerable vital processes in all fields of life. Additionally, enzymatic activities are utilized in a multitude of biological, medical, and technical applications. Using cellulases and other glycoside hydrolases for the conversion of lignocellulosic biomass into biofuel has become an active area of research for applied enzymology. Development of high‐throughput, high‐specificity enzyme assays for glycoside hydrolases is critical to identify, characterize, and optimize such activities for efficient biomass degradation. Here, we present a detailed protocol describing our recently reported nanostructure‐initiator mass spectrometry (NIMS)‐based technique for the rapid analysis of glycoside hydrolase activities. NIMS enzyme activity (Nimzyme) assays can be used to characterize already known, or identify novel glycoside hydrolases. Importantly, several enzymatic activities can be tested in parallel in a multiplexed arrangement and under a broad range of assay conditions. Curr. Protoc. Chem. Biol . 4:123‐142 © 2012 by John Wiley & Sons, Inc.
Cervical collagen imaging for determining preterm labor risks using a colposcope with full Mueller matrix capability (2016)

Preterm birth is a worldwide health issue, as the number one cause of infant mortality and neurological disorders. Although affecting nearly 10% of all births, an accurate, reliable diagnostic method for preterm birth has, yet, to be developed. The primary constituent of the cervix, collagen, provides the structural support and mechanical strength to maintain cervical closure, through specific organization, during fetal gestation. As pregnancy progresses, the disorganization of the cervical collagen occurs to allow eventual cervical pliability so the baby can be birthed through the cervical opening. This disorganization of collagen affects the mechanical properties of the cervix and, if the changes occur prematurely, may be a significant factor leading to preterm birth. The organization of collagen can be analyzed through the use of Mueller Matrix Polarimetric imaging of the characteristic birefringence of collagen. In this research, we have built a full Mueller Matrix Polarimetry attachment to a standard colposcope to enable imaging of human cervixes during standard prenatal exams at various stages of fetal gestation. Analysis of the polarimetric images provides information of quantity and organization of cervical collagen at specific gestational stages of pregnancy. This quantitative information may provide an indication of risk of preterm birth.
Recent Progress in the Syntheses and Biological Evaluation of Boronated Porphyrins for Boron Neutron‐Capture Therapy (2006)

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 200 leading journals. To access a ChemInform Abstract, please click on HTML or PDF.
Modulation of cytotoxicity and cellular pharmacology of 1,2-diaminocyclohexane platinum (IV) complexes mediated by axial and equatorial ligands. (1993)

Isomers (R,R-, S,S-, and cis-) of 1,2-diaminocyclohexane (DACH) platinum(IV) complexes with selected axial and equatorial ligands were synthesized and evaluated for in vitro antitumor activity, cellular uptake, and total DNA-Pt adducts. L1210 cells, sensitive to cis-diamminedichloroplatinum(II) (CDDP) and tetraplatin (L1210/0), 160-fold resistant to CDDP [L1210/diamminedichloroplatinum (DDP)], or 70-fold resistant to tetraplatin (L1210/DACH), were used in conjunction with compounds having the general structure DACH-Pt(IV)-X2Y2, where X and Y are axial and equatorial ligands and X2Y2 are specifically Cl2Cl2,Ac2Cl2, (TFA)2Cl2, (OH)2Cl2, and Cl2CBDCA (Cl, chloro; Ac, acetato; TFA, trifluoroacetato; OH, hydroxo; CBDCA, 1,1-cyclobutanedicarboxylato). Comparison of cytotoxicities between isomers of Cl2Cl2,Ac2Cl2, or Cl2CBDCA indicated that R,R-isomers were the most effective against all three cell lines. The relatively lower activity of the S,S- and cis-isomers was cell line dependent: against L1210/DACH, both isomers of Cl2Cl2 were only 2- to 3-fold less effective, and this contrasted with 7- and 26-fold lower cytotoxicities, respectively, against L1210/DDP. Cross-resistance factors in the L1210/DDP and L1210/DACH lines depended on both isomeric form and the nature of axial or equatorial ligand. The L1210/DDP cells were 6- to 9-fold cross-resistant to the R,R-isomer, 8- to 15-fold to S,S-isomer, and 13- to 38-fold to cis-isomer. The L1210/DACH line was only 4- to 7-fold cross-resistant to the three isomers of Ac2Cl2 but cross-resistance to the isomers was 47- to 79-fold for Cl2Cl2 and 22- to 56-fold for Cl2CBDCA complexes. Compared with CDDP, accumulation (2 h at 100 microM drug concentration) of Ac2Cl2 in the three L1210 cell lines was 26-50%, while uptake of Cl2Cl2 and (TFA)2Cl2 was 100-170% and 320-570%, respectively. The greatest DNA binding was seen with Cl2Cl2 in all cell lines, followed by (TFA)2Cl2, CDDP, and Ac2Cl2. DNA binding correlated directly with potency (1/concentration producing 50% inhibition) in the L1210/0 model (r = 0.973, P < 0.016) but not in the L1210/DDP and L1210/DACH models. Accumulation and DNA-binding studies indicated that binding efficiency to DNA was: Cl2Cl2 > Ac2Cl2 > CDDP > (TFA)2Cl2. In a nonreducing environment, the Pt(IV) complexes (20 microM) did not react with salmon sperm DNA. Reduced glutathione (100 microM), as a reducing agent, rendered full binding capacity to Cl2Cl2; binding was 25-30% of the expected maximum for (TFA)2Cl2, while Ac2Cl2 remained inert.(ABSTRACT TRUNCATED AT 400 WORDS)
<i>ETHYLENE-INSENSITIVE5</i> encodes a 5′→3′ exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2 (2006)

Ethylene is a gaseous plant growth regulator that controls a multitude of developmental and stress responses. Recently, the levels of Arabidopsis EIN3 protein, a key transcription factor mediating ethylene-regulated gene expression, have been demonstrated to increase in response to the presence of ethylene gas. Furthermore, in the absence of ethylene, EIN3 is quickly degraded through a ubiquitin/proteasome pathway mediated by two F-box proteins, EBF1 and EBF2. Here we report the identification of ETHYLENE-INSENSITIVE5 as the 5'-->3' exoribonuclease XRN4. Specifically, we demonstrate that EIN5 is a component of the ethylene signal transduction cascade acting downstream of CTR1 that is required for ethylene-mediated gene expression changes. Furthermore, we find that the ethylene insensitivity of ein5 mutant plants is a consequence of the over-accumulation of EBF1 and EBF2 mRNAs resulting in the under-accumulation of EIN3 even in the presence of ethylene gas. Together, our results suggest that the role of EIN5 in ethylene perception is to antagonize the negative feedback regulation on EIN3 by promoting EBF1 and EBF2 mRNA decay, which consequently allows the accumulation of EIN3 protein to trigger the ethylene response.
Inhibition of Hemangiogenesis and Lymphangiogenesis<i>after</i>Normal-Risk Corneal Transplantation by Neutralizing VEGF Promotes Graft Survival (2004)

There is concurrent, VEGF-A-dependent hem- and lymphangiogenesis after normal-risk keratoplasty within the preoperatively avascular recipient bed. Inhibition of hem- and lymphangiogenesis (afferent and efferent arm of an immune response) after normal-risk corneal transplantation improves long-term graft survival, establishing early postoperative hem- and lymphangiogenesis as novel risk factors for graft rejection even in low-risk eyes.
Two-dimensional shear elasticity imaging using comb-push acoustic radiation force and algebraic direct inversion of the motion differential equation (2011)

Tissue mechanical properties can be obtained by algebraic direct inversion (ADI) of the shear-wave motion differential equation, which is insensitive to reflection and geometry of the pushing beam. Shear waves normally generated by a focused ultrasound pushing beam have limited spatial extent in depth and are transient in time, leading to noisy and unstable ADI results. A comb-shape acoustic radiation force distribution can generate shear waves with longer spatial extent and time duration, facilitating more robust ADI. For 400 μs, a linear array transducer simultaneously transmitted four unfocused pushing beams (12 on elements for each pushing beam, 8 off elements between beams) into a tissue-mimicking phantom (∼1.5 kPa) with a cylindrical inclusion (∼4 kPa). The ultrasound system (Verasonics Inc.) then immediately switched to flash imaging mode (frame rate = 2 kHz, spatial resolution = 0.31 mm) to measure shear-wave displacements in a 38 mm by 30 mm domain that was used for ADI. The reconstructed 2D shear elasticity map provides accurate shear elasticity estimates (background = 1.5 kPa with 7% variance; inclusion = 3.9 kPa with 15% variance) and excellent contrast between the background and inclusion.
The effects of reflector antenna diffraction on the interference cancellation performance of coherent sidelobe cancellers (1986)

While adaptive antenna technology has undergone significant development, little attention has been given to the impact of antenna design on the performance of the adaptive system. A need exists to factor the details of the antenna system response into the analysis of adaptive system performance, particularly in the case where adaptive cancellation is required over a broad bandwidth. At extremely high frequency (EHF) where wide bandwidth allocations exist, reflector antenna technology used with an adaptive sidelobe canceller design is appropriate. This paper uses a simple diffraction model to compare the adaptive performance differences between Cassegrain and offset reflector designs. The reduced diffraction of the offset reflector design results in improved cancellation performance. These analyses also provide the opportunity to explore the impacts of antenna design parameters and interference power levels and arrival directions.
Fragmentation of kidney stones <i>in vitro</i> by focused ultrasound bursts without shock waves (2013)

Shock wave lithotripsy (SWL) is the most common procedure for treatment of kidney stones. SWL noninvasively delivers high-energy focused shocks to fracture stones into passable fragments. We have recently observed that lower-amplitude, sinusoidal bursts of ultrasound can generate similar fracture of stones. This work investigated the characteristics of stone fragmentation for natural (uric acid, struvite, calcium oxalate, and cystine) and artificial stones treated by ultrasound bursts. Stones were fixed in position in a degassed water tank and exposed to 10-cycle bursts from a 200-kHz transducer with a pressure amplitude of p ≤ 6.5 MPa, delivered at a rate of 40–200 Hz. Exposures caused progressive fractures in the stone surface leading to fragments up to 3 mm. Treatment of artificial stones at different frequencies exhibited an inverse relationship between the resulting fragment sizes and ultrasound frequency. All artificial and natural types of stones tested could be fragmented, but the comminution rate varied significantly with stone composition over a range of 12–630 mg/min. These data suggest that stones can be controllably fragmented by sinusoidal ultrasound bursts, which may offer an alternative treatment strategy to SWL. [Work supported by NIH 2T32DK007779-11A1, R01 EB007643, P01 DK043881, R01 DK092197, NSBRI through NASA NCC 9-58.]
Role of C3a and C5a in the activation of mast cells. (1997)

Mast cells and basophils are known to be triggered by allergens via cross-linking with their high-affinity IgE-binding receptors, Fc epsilon RI. The anaphylatoxic activity of the complement-derived peptides C3a and C5a has been known for a long time; however, it has also been reported that serosal- and mucosal-type mast cells respond differently to peptidergic stimuli. The mechanism of mast cell activation by cross-linking of Fc epsilon RI has been the subject of intensive studies in the past few years, while the action mode of the anaphylatoxic complement peptides has been revealed only recently. We report about a novel function of C3a: its inhibitory activity on IgE-mediated triggering of the mucosal RBL-2H3 cells. Surprisingly, the other anaphylatoxic peptide C5a, which has been shown to be significantly more effective in several biological assays, did not influence antigen-induced triggering of the RBL-2H3 cell line at all.
Separate Estimation of Mean Spacings and Irregularities of Point Scatterers (1991)

Some random media can be expressed by an aggregation of point scatterers. This paper describes the separate estimation of mean spacings and irregularities of these point scatterers by a combination of two methods. The first method estimates the mean spacing of point scatterers by measuring the power of the scattered waves, while the second method estimates the mean spacings and irregularities together by analyzing the power spectrum shape with fractal theory. The estimation methods are then confirmed by experimental results.
2,2′-Spirobi(1,3,2-benzodioxaphosphole) : an inexpensive and effective reagent for peptide synthesis (1982)

The Readily accessible spirocyclic oxyphosphorane, 2,2′-spirobi(1,3,2-benzodioxaphosphole)(1), is a convenient and effective reagent for peptide coupling, racemisation as measured by the lzumiya test being strikingly suppressed to <0.1% in the presence of N-hydroxysuccinimide.
Inexpensive microwave moisture sensor for granular materials (2007)

A low-cost microwave moisture sensor for real-time, nondestructive determination of moisture content in granular and particulate materials has been assembled and tested. Measurement results on wheat and corn are promising and indicate that moisture content can be predicted from complex permittivity measurement with a single calibration equation. The low price and simplicity of use of the proposed sensor will open a new opportunity for widespread integration of microwave sensing technology in numerous industries including food and agriculture, pharmaceutical, mining, and construction. The sensor can also be used to determine bulk density from the same set of measurements of the relative complex permittivity (Trabelsi, 1997).
An improved route to 19-substituted geldanamycins as novel Hsp90 inhibitors – potential therapeutics in cancer and neurodegeneration (2013)

19-Substituted geldanamycin derivatives are efficient Hsp90 inhibitors, without the toxicity associated with the other benzoquinone ansamycins, thus giving them potential for use as molecular therapeutics in cancer and neurodegeneration. Here a new method of synthesising these important compounds is reported, eliminating the need for toxic metals and metalloids.
TT-Cut Torsional Quartz Crystal Resonators of Free-Free Bar-Type (1994)

This paper describes a TT-cut torsional quartz crystal resonator of free-free bar type. An object of this paper is to clarify the frequency temperature behavior, series resistance and a quality factor for TT-cut torsional quartz crystal resonators of free-free bar-type. The analysis results are then compared with the measured data. The principal results indicate that the calculated values of frequency temperature behavior for resonators of free-free bar-type agree comparatively well with the measured ones. Similar to the torsional resonators of tuning fork-type, a torsional quartz crystal resonator of free-free bar-type is also found to have an absolute value of the second order temperature coefficient β smaller than half a value of that for a flexural mode quartz crystal resonator.
Gene expression in the DpnI and DpnII restriction enzyme systems of Streptococcus pneumoniae (1992)

Although a number of bacterial species are naturally transformable, that is, their cells are able to take up external DNA in substantial amounts and integrate it into the chromosome without artificial manipulation of the cell surface, Streptococcus pneumoniae, the first species in which this phenomenon was detected, remains a prototype of such transformation. Cells of S. pneumonias also contain potent restriction endonucleases able to severely restrict DNA introduced during viral infection. Our current understanding of the genetic basis of the complementary DpnI and DpnII restriction systems and of the biochemistry of their component enzymes are briefly reviewed. The manner in which these enzymes impinge on the transfer of chromosomal genes and of plasmeds will be examined in detail. It will be seen that far from acting against foreign DNA in general, the restriction systems seem to be designed to exclude only infecting viral DNA The presence of complementary restriction systems in different cells of S. pneumonias enhances their effectiveness in blocking viral infection and promoting species survival. This enhanced effectiveness requires the expression of alternative restriction systems. Therefore, the ability of the cells to transfer the restriction enzyme genes and to regulate their expression are important for survival of the species.
Stroke volume obtained by electrical interrogation of the brachial artery: transbrachial electrical bioimpedance velocimetry (2012)

The goal of this study is to measure left ventricular stroke volume (SV) from the brachial artery (BA) using electrical bioimpedance. Doppler-derived SV was used for comparison. Twenty-nine healthy adults were recruited for study. Doppler echocardiographic-derived SV was obtained from the product of distal left ventricular outflow tract cross-sectional area and systolic velocity integral. SV from the BA was obtained by transbrachial electrical bioimpedance velocimetry (TBEV). Application of a current field across the left brachium was effected by injection of a constant magnitude, high frequency, low amperage, alternating current. Therein, a static voltage (U(0)) and pulsatile voltage change (ΔU(t)) were measured and converted to their corresponding impedances, Z(0) and ΔZ(t). TBEV-derived SV was obtained by multiplying a square root value of the normalized, acceleration-based, peak first time derivative of ΔZ(t) by a volume conductor and systolic flow time. Inter-method agreement was determined by the Bland-Altman method. To assess the contribution of blood resistivity variations to ΔZ(t), BA diameters were measured at end-diastole and peak systolic expansion. Results indicate that since the BA demonstrates parabolic, laminar flow, with minimal diameter changes, blood resistivity variations are likely responsible for the derived impedance changes. Bland-Altman analysis shows that SV is obtainable by TBEV from healthy humans at rest.
A Genetic Screen for Nitrate Regulatory Mutants Captures the Nitrate Transporter Gene <i>NRT1.1</i> (2009)

Nitrate regulatory mutants (nrg) of Arabidopsis (Arabidopsis thaliana) were sought using a genetic screen that employed a nitrate-inducible promoter fused to the yellow fluorescent protein marker gene YFP. A mutation was identified that impaired nitrate induction, and it was localized to the nitrate regulatory gene NLP7, demonstrating the validity of this screen. A second, independent mutation (nrg1) mapped to a region containing the NRT1.1 (CHL1) nitrate transporter gene on chromosome 1. Sequence analysis of NRT1.1 in the mutant revealed a nonsense mutation that truncated the NRT1.1 protein at amino acid 301. The nrg1 mutation disrupted nitrate regulation of several endogenous genes as induction of three nitrate-responsive genes (NIA1, NiR, and NRT2.1) was dramatically reduced in roots of the mutant after 2-h treatment using nitrate concentrations from 0.25 to 20 mm. Another nrt1.1 mutant (deletion mutant chl1-5) showed a similar phenotype. The loss of nitrate induction in the two nrt1.1 mutants (nrg1 and chl1-5) was not explained by reduced nitrate uptake and was reversed by nitrogen deprivation. Microarray analysis showed that nitrate induction of 111 genes was reduced and of three genes increased 2-fold or more in the nrg1 mutant. Genes involved in nitrate assimilation, energy metabolism, and pentose-phosphate pathway were most affected. These results strongly support the model that NRT1.1 acts as a nitrate regulator or sensor in Arabidopsis.
Shielding effectiveness performance of conductive concrete structures (2017)

Conductive concrete mixtures have been designed and demonstrated to perform electromagnetic shielding. This paper describes the design, testing methods, and results obtained from the development of conductive concrete construction for structured electromagnetic shielding.
First PGT-A using human in vivo blastocysts recovered by uterine lavage: comparison with matched IVF embryo controls† (2019)

Protocol Registration and Results System (PRS) Trial Registration Number and Name: Punta Mita Study TD-2104: Clinical Trials NCT03426007.