gebhart/patrepeval huggingface dataset:
Relationship between gestational cocaine use and pregnancy outcome: A meta‐analysis (1991)

Despite a growing number of studies that have investigated the reproductive effects of maternal cocaine use, a homogeneous pattern of fetal effects has not been established and there is little consensus on the adverse effects of the drug. We used meta-analysis to evaluate the reproductive risks of cocaine. We reviewed the 45 scientific papers published in the English language dealing with effects of cocaine used during pregnancy on pregnancy outcome in humans, and identified 20 papers eligible for meta-analysis (cocaine use in pregnancy, pregnancy/fetal outcome studies, human studies, original work, cohort or case control studies, control group present, English language). Our analysis revealed that very few adverse reproductive effects could be shown to be significantly associated with cocaine use by polydrug users when compared to control groups of polydrug users not using cocaine [genitourinary malformations; odds ratio of 6.08 (95% CI 1.18-31.3); gestation age: Cohen's d 0.37 (CI 0.2-0.55)]. When the control groups consisted of no drug users, the polydrug users abusing cocaine had a higher risk for spontaneous abortions [odds ration 10.50 (CI 11.74-64.1)]. Similarly, comparison of users of cocaine alone or no drug users revealed a higher risk for in utero death, in addition to genitourinary tract malformations. Analysis of continuous variables (head circumference, gestational age, birth weight and length) revealed that the effect size was dependent upon the nature of the comparison. Comparison of cocaine users to no drug users consistently yielded a medium effect size (Cohen's d) between 0.50 and 0.58, while comparison of polydrug/cocaine users to polydrug/no cocaine users provided effect sizes small to non existent (0.06-0.37). These discrepancies suggest that a variety of adverse reproductive effects commonly quoted to be associated with maternal use of cocaine may be caused by confounding factors clustering in cocaine users.
Ultra-broadband terahertz perfect absorber by exciting multi-order diffractions in a double-layered grating structure (2015)

Terahertz (THz) perfect absorber, as a useful functional device, has attracted considerable attention. Traditional metamaterial perfect absorbers are usually in response to single-frequency or multi-frequency owing to the resonance features of the metal-based sub-wavelength structure. In this paper, a simple double-layered doped-silicon grating structure was designed to realize an ultra-broadband and polarization-independent THz perfect absorber. Both theoretical and experimental results demonstrate that the incident THz waves ranging from 0.59 to 2.58 THz can be efficiently absorbed with an absorptivity of more than 95% and a bandwidth of about 2.0 THz. The excellent characteristic of this broad-bandwidth THz perfect absorber is mainly resulted from the air gap mode resonance together with the first-order and the second-order grating diffractions.
Citrate synthase from the thermophilic archaebacterium <i>Thermoplasma acidophilum</i> (1990)

The gene encoding the citric acid cycle enzyme, citrate synthase, has been cloned from the thermoacidophilic archaebacterium, Thermoplasma acidophilum. We report the sequencing of this gene and its flanking regions, and the derived amino acid sequence of the enzyme is compared by multiple-sequence alignment analysis with those of citrate synthases from eubacterial and eukaryotic organisms. The similarity is less than 30% between the archaebacterial and non-archaebacterial sequences, although the majority of residues implicated in the catalytic action of the enzyme have been conserved across all three kingdoms. The cloned archaebacterial gene has been expressed in Escherichia coli to produce catalytically active citrate synthase. This is the first reported sequence of citrate synthase from the archaebacteria.
<i>Chlamydia trachomatis</i>-Specific Human CD8<sup>+</sup>T Cells Show Two Patterns of Antigen Recognition (2004)

Chlamydia trachomatis is an intracellular gram-negative bacteria which causes several clinically important diseases. T-cell-mediated immunity and the production of gamma interferon (IFN-gamma) are known to be essential for the clearance of the bacteria in vivo. Here we have investigated CD8(+)-T-cell responses to C. trachomatis in patients with previous episodes of chlamydia infection. To isolate C. trachomatis-specific CD8(+)-T-cell lines, dendritic cells (DC) were infected with C. trachomatis and cocultured with purified CD8(+) T cells to generate C. trachomatis-specific CD8(+)-T-cell lines which were then cloned. Two patterns of recognition of C. trachomatis-infected cells by CD8(+)-T-cell clones were identified. In the first, C. trachomatis antigens were recognized in association with classical class I HLA antigens, and responses were inhibited by class I HLA-specific monoclonal antibodies. The second set of clones was unrestricted by classical HLA class I, and further studies showed that CD1 molecules were also not the restriction element for those clones. Both types of clones produced IFN-gamma in response to C. trachomatis and were able to lyse C. trachomatis-infected target cells. However, unrestricted clones recognized C. trachomatis-infected cells at much earlier time points postinfection than HLA-restricted clones. Coculture of C. trachomatis-infected DC with the C. trachomatis-specific clones induced DC activation and a rapid enhancement of interleukin-12 (IL-12) production. Early production of IL-12 during C. trachomatis infection, facilitated by unrestricted CD8(+)-T-cell clones, may be important in ensuring a subsequent Th1 T-cell-mediated response by classical major histocompatibility complex-restricted CD4(+) and CD8(+) T cells.
OPA1 overexpression ameliorates mitochondrial cristae remodeling, mitochondrial dysfunction, and neuronal apoptosis in prion diseases (2019)

Prion diseases caused by the cellular prion protein (PrP<sup>C</sup>) conversion into a misfolded isoform (PrP<sup>Sc</sup>) are associated with multiple mitochondrial damages. We previously reported mitochondrial dynamic abnormalities and cell death in prion diseases via modulation of a variety of factors. Optic atrophy 1 (OPA1) is one of the factors that control mitochondrial fusion, mitochondrial DNA (mtDNA) maintenance, bioenergetics, and cristae integrity. In this study, we observed downregulation of OPA1 in prion disease models in vitro and in vivo, mitochondria structure damage and dysfunction, loss of mtDNA, and neuronal apoptosis. Similar mitochondria findings were seen in OPA1-silenced un-infected primary neurons. Overexpression of OPA1 not only alleviated prion-induced mitochondrial network fragmentation and mtDNA loss, decrease in intracellular ATP, increase in ADP/ATP ratio, and decrease in mitochondrial membrane potential but also protected neurons from apoptosis by suppressing the release of cytochrome c from mitochondria to cytosol and activation of the apoptotic factor, caspase 3. Our results demonstrated that overexpression of OPA1 alleviates prion-associated mitochondrial network fragmentation and cristae remodeling, mitochondrial dysfunction, mtDNA depletion, and neuronal apoptosis, suggesting that OPA1 may be a novel and effective therapeutic target for prion diseases.
Centrosome abnormalities in pancreatic ductal carcinoma. (1999)

The centrosome plays an important role in microtubule nucleation and organization, ensuring the establishment of cell polarity and balanced chromosome segregation. Recent studies have suggested that the loss of cell polarity and/or chromosome missegregation (aneuploidy) in human malignant tumors could result from defects in centrosome function. Using immunofluorescence analysis with an antibody to gamma-tubulin (a well-characterized centrosomal component), we examined surgically resected human pancreatic tissues for centrosome abnormalities. The tissues included ductal carcinomas (n = 13), adenomas (n = 3), endocrine tumors (n = 3), chronic pancreatitis (n = 5), and normal pancreatic tissues (n = 12). We found that most (85%) carcinomas and some adenomas displayed abnormal centrosome profiles, characterized by an increase in size and number of centrosomes, and by their irregular distribution. In contrast, none of normal ductal and stromal tissues showed these abnormalities. These findings suggest that centrosome abnormalities may develop at a relatively early stage of pancreatic ductal carcinogenesis.
Physical properties of silver oxide thin films by pulsed laser deposition: effect of oxygen pressure during growth (2009)

Silver oxide thin films have potential applications in ultra-high density optical non-volatile memories and in fluorescence imaging. In this paper, the physical properties of silver oxide thin films prepared at room temperature by the pulsed laser deposition (PLD) technique with varying oxygen pressure during growth are reported. The oxygen pressure in the growth chamber is varied between 9 and 50 Pa. The x-ray diffraction (XRD) analysis showed that all the films were polycrystalline. With increasing oxygen pressure in the growth chamber, it is observed that (i) the hexagonal Ag2O transforms to monoclinic AgO, (ii) the grain size in the film increases from 59 to 200 nm, (iii) the surface roughness of the film increases from 9 to 42 nm, (iv) the resistivity of the films increases from 1 to 4 × 104 Ω m, (v) the surface work function of the films increases from 5.47 to 5.61 eV and (vi) the optical band gap of AgO thin films decreases from 1.01 to 0.93 eV. Raman spectroscopy on AgO thin films shows low wave number peaks corresponding to the stretching vibration of Ag–O bonds. This study shows that single phase AgO thin films, a requirement for plasmonic devices, can be prepared at room temperature by the PLD technique with an oxygen pressure of 20 Pa.
Identification of erythrocyte-binding antigens in Helicobacter pylori (1992)

The surface antigens of Helicobacter pylori conferring erythrocyte-binding activity were obtained by adsorption onto formaldehyde-treated dog and goat erythrocytes from supernatant fractions of sonicated bacteria and elution using a high concentration of NaCl. The desorbed material was analysed by SDS-PAGE and immunoblotting with anti-whole-cell serum to agar-grown bacteria which had been absorbed with broth-grown, non-haemagglutinating cells (haemagglutination-associated antiserum). Two polypeptides with molecular masses of 25 and 59 kDa were revealed as erythrocyte-binding antigens. Strains which agglutinated both dog and goat erythrocytes possessed both these erythrocyte-binding antigens, whereas an antigenically cross-reactive 24 kDa polypeptide was present in a strain which only agglutinated goat erythrocytes. Haemagglutinin material was extracted from H. pylori using n-octylglucopyranoside and purified by Sepharose chromatography and sucrose density gradient ultracentrifugation. The purified extract directly agglutinated erythrocytes in a neuraminyl-lactose-sensitive and neuraminidase-sensitive manner. The 59 kDa polypeptide was not present in the purified haemagglutinin preparation. The haemagglutination-associated antiserum reacted strongly with the 25 kDa polypeptide band which was the most prominent polypeptide band on analysis of the purified haemagglutinin preparation by SDS-PAGE and silver staining. Thus, H. pylori possesses at least two adhesins, one of which recognises a N-acetylneuraminic acid (alpha 2-3) moiety of receptors, the other being of unknown receptor specificity. Differences in the antigenicity and molecular masses of these adhesins in individual strains may underlie differences in receptor-binding specificities and haemagglutination profiles.
Chromosome-scale, haplotype-resolved assembly of human genomes (2020)

Haplotype-resolved or phased genome assembly provides a complete picture of genomes and their complex genetic variations. However, current algorithms for phased assembly either do not generate chromosome-scale phasing or require pedigree information, which limits their application. We present a method named diploid assembly (DipAsm) that uses long, accurate reads and long-range conformation data for single individuals to generate a chromosome-scale phased assembly within 1 day. Applied to four public human genomes, PGP1, HG002, NA12878 and HG00733, DipAsm produced haplotype-resolved assemblies with minimum contig length needed to cover 50% of the known genome (NG50) up to 25 Mb and phased ~99.5% of heterozygous sites at 98-99% accuracy, outperforming other approaches in terms of both contiguity and phasing completeness. We demonstrate the importance of chromosome-scale phased assemblies for the discovery of structural variants (SVs), including thousands of new transposon insertions, and of highly polymorphic and medically important regions such as the human leukocyte antigen (HLA) and killer cell immunoglobulin-like receptor (KIR) regions. DipAsm will facilitate high-quality precision medicine and studies of individual haplotype variation and population diversity.
[Inhibition of human glioma cell growth by a soluble recombinant human CD40 ligand]. (2002)

CD40 stimulated by its ligand directly inhibits human glioma cell growth in vitro. These results suggest that srhCD40L may be of clinic use to inhibit glioma growth.
Effect of organic acid additives on SO<sub>2</sub> absorption into CaO/CaCO<sub>3</sub> slurries (1982)

Abstract The absorption rate of sulfur dioxide from a gas mixture of SO 2 and N 2 into aqueous acetic acid and adipic acid solutions at p H 4 to 6 has been measured at 25°C in a continuous stirred vessel with an unbroken gas‐liquid interface. The experimental data have been modeled by approximate surface renewal theory with multiple equilibrium reactions. The model has been used to evaluate the relative effectiveness of eleven organic acid additives at typical limestone scrubber conditions. Adipic, sulfopropionic, sulfosuccinic, and hydroxypropionic acids appear to be the most promising alternatives.
Vasoconstriction in the Rat Kidney Induced by Endothelin-1 Is Blocked by PD 145065 (1993)

We have previously shown that the receptors mediating the renal and systemic vasoconstrictor effects of endothelin-1 (ET-1) are of two distinct endothelin receptor subtypes. Here, we evaluate the effect of PD 145065, a nonselective endothelin receptor antagonist, on the renal vasoconstrictor effects of ET-1 in the rat kidney. ET-1 induced concentration-dependent increases in perfusion pressure in the isolated perfused kidney of the rat. The ETA receptor-selective antagonists BQ-123 (10 microM) and FR 139317 (10 microM) lowered the ET-1-induced rise in perfusion pressure by 57% and 61%, respectively, at 3 x 10(-10) M ET-1. By comparison, the ET-1-induced vasoconstriction was fully antagonized (96% inhibition) by PD 145065 (10 microM). In the anesthetized rat, ET-1 produced a dose-dependent increase in mean arterial pressure, which was attenuated by PD 145065. The initial depressor response to ET-1 was completely blocked by PD 145065, as were the reduction in renal blood flow and increase in renal vascular resistance induced by ET-1. These results suggest that both the ETA and a non-ETA receptor subtype play an important role in mediating the vasoconstrictor effects of ET-1 in the rat kidney.
Vagus Nerve Stimulation as a Potential Therapy in Early Alzheimer’s Disease: A Review (2022)

Cognitive dysfunction in Alzheimer's disease (AD) is caused by disturbances in neuronal circuits of the brain underpinned by synapse loss, neuronal dysfunction and neuronal death. Amyloid beta and tau protein cause these pathological changes and enhance neuroinflammation, which in turn modifies disease progression and severity. Vagal nerve stimulation (VNS), <i>via</i> activation of the locus coeruleus (LC), results in the release of catecholamines in the hippocampus and neocortex, which can enhance synaptic plasticity and reduce inflammatory signalling. Vagal nerve stimulation has shown promise to enhance cognitive ability in animal models. Research in rodents has shown that VNS can have positive effects on basal synaptic function and synaptic plasticity, tune inflammatory signalling, and limit the accumulation of amyloid plaques. Research in humans with invasive and non-invasive VNS devices has shown promise for the modulation of cognition. However, the direct stimulation of the vagus nerve afforded with the invasive procedure carries surgical risks. In contrast, non-invasive VNS has the potential to be a broadly available therapy to manage cognitive symptoms in early AD, however, the magnitude and specificity of its effects remains to be elucidated, and the non-inferiority of the effects of non-invasive VNS as compared with invasive VNS still needs to be established. Ongoing clinical trials with healthy individuals and patients with early AD will provide valuable information to clarify the potential benefits of non-invasive VNS in cognition and AD. Whether invasive or non-invasive VNS can produce a significant improvement on memory function and whether its effects can modify the progression of AD will require further investigation.
Acceleration of trace-based fault simulation of combinational circuits (1993)

The authors point out that significant improvements in the speed of fault simulation of combinational circuits have been achieved in recent years by combining parallel pattern simulation for the fault-free circuit with trace-based methods for identifying detected faults. Here, two concepts-joining stems for reducing explicit simulation of stem faults and quit lines for reducing backtracing within fanout-free regions-are presented. These concepts are used in a parallel-pattern trace-based simulation algorithm. Results of simulating the ISCAS85 benchmark combinational circuits with the proposed methods show their effectiveness both with and without fault-dropping.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
miR-122 affects the viability and apoptosis of hepatocellular carcinoma cells (2009)

OBJECTIVE. miR-122 is highly abundant in liver and a hepato-specific microRNA. There is evidence to show that miR-122 expression is down-regulated in human hepatocellular carcinoma (HCC). It is not known whether miR-122 affects the cellular behavior of hepatoma cells. The aim of this study was to investigate the effects of miR-122 on the viability and apoptosis of hepatoma cells. MATERIAL AND METHODS. The viability and apoptosis of Huh-7 and HepG2 cells treated with miR-122 or miR-122 antisense RNA (anti-miR-122) were analyzed by adenosine triphosphate (ATP)-based luminescent assay, annexin V-based flow cytometry, and terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) detection. The miR-122 coding genes in both cell lines were sequenced. RESULTS. Although two putative promoter sequences for the miR-122 gene at 18q21.31 were detected, the miR-122 coding sequence was missing in HepG2 cells, which might be the reason for the absence of miR-122 expression. There was no significant difference between the viabilities of HepG2 cells transfected with miR-122 and mock HepG2 cells (p >0.05). However, the viability of Huh-7 transfected with anti-miR-122 was significantly elevated at 24, 36, and 48 h posttransfection compared with that of mock cells (p <0.01). Both the flow cytometry and TUNEL assay showed that the apoptotic level of Huh-7 transfected with anti-miR-122 was significantly decreased at 48 h posttransfection (p <0.01). CONCLUSIONS. miR-122 down-regulated the viability but up-regulated the apoptosis of hepatoma cell Huh-7. The absence of miR-122 expression in HepG2 cells was due to the loss of the miR-122 coding sequence in chromosome 18. These results imply that aberrant expression of miR-122 may contribute to hepatocarcinogenesis.
Nanofluidics, from bulk to interfaces (2009)

Nanofluidics has emerged recently in the footsteps of microfluidics, following the quest for scale reduction inherent to nanotechnologies. By definition, nanofluidics explores transport phenomena of fluids at nanometer scales. Why is the nanometer scale specific? What fluid properties are probed at nanometric scales? In other words, why does 'nanofluidics' deserve its own brand name? In this critical review, we will explore the vast manifold of length scales emerging for fluid behavior at the nanoscale, as well as the associated mechanisms and corresponding applications. We will in particular explore the interplay between bulk and interface phenomena. The limit of validity of the continuum approaches will be discussed, as well as the numerous surface induced effects occurring at these scales, from hydrodynamic slippage to the various electro-kinetic phenomena originating from the couplings between hydrodynamics and electrostatics. An enlightening analogy between ion transport in nanochannels and transport in doped semi-conductors will be discussed (156 references).
FreeLoc: Calibration-free crowdsourced indoor localization (2013)

Many indoor localization techniques that rely on RF signals from wireless Access Points have been proposed in the last decade. In recent years, research on crowdsourced (also known as “Organic”) Wi-Fi fingerprint positioning systems has been attracting much attention. This participatory approach introduces new challenges that no previously proposed techniques have taken into account. This paper proposes “FreeLoc”, an efficient localization method addressing three major technical issues posed in crowdsourcing based systems. Our novel solution facilitates 1) extracting accurate fingerprint values from short RSS measurement times 2) calibration-free positioning across different devices and 3) maintaining a single fingerprint for each location in a radio map, irrespective of any number of uploaded data sets for a given location. Through experiments using four different smartphones, we evaluate our new indoor positioning method. The experimental results confirm that the proposed scheme provides consistent localization accuracy in an environment where the device heterogeneity and the multiple surveyor problems exist.
IP-based IMT network platform (2001)

This article describes a network platform with future IP-based techniques for "beyond IMT-2000." First, it presents a vision for beyond IMT-2000 in terms of requirements for service and network capabilities. Next, it shows a general architecture of the IP-based IMT network platform (IP/sup 2/). Then it discusses the study of key network techniques (location management, routing/handover, and service management) featured in the proposed platform architecture.
Who Bosses Whom: A Comparison of Conflict Management Styles among University Undergraduates in Different Professional Disciplines (2014)

This research study explores the differences in conflict management based on academic discipline, gender, and year in school. Looking at past research revealed that there is little cross disciplinary research on the topic of conflict management styles. This study aimed to fill that gap by comparing four conflict management styles (Compromise, Avoidance, Accommodation, and Domination) across undergraduate nursing students, engineering students, and education students. Students from these schools were asked to fill out a survey asking about their conflict management styles. The results revealed that engineering students use the domination conflict management style significantly more than nursing students and education students. It also revealed that nursing students use compromising significantly more than engineers. For gender, men use more dominating than women whereas women use more compromising then men. For year in school, sophomores use avoidance more than seniors.