gebhart/patrepeval huggingface dataset:
Role of the Differentially Spliced Carboxyl Terminus in Thromboxane A2 Receptor Trafficking (2001)

The thromboxane A(2) receptor (TP) is a G protein-coupled receptor that is expressed as two alternatively spliced isoforms, alpha (343 residues) and beta (407 residues) that share the first 328 residues. We have previously shown that TPbeta, but not TPalpha, undergoes agonist-induced internalization in a dynamin-, GRK-, and arrestin-dependent manner. In the present report, we demonstrate that TPbeta, but not TPalpha, also undergoes tonic internalization. Tonic internalization of TPbeta was temperature- and dynamin-dependent and was inhibited by sucrose and NH(4)Cl treatment but unaffected by wild-type or dominant-negative GRKs or arrestins. Truncation and site-directed mutagenesis revealed that a YX(3)phi motif (where X is any residue and phi is a bulky hydrophobic residue) found in the proximal portion of the carboxyl-terminal tail of TPbeta was critical for tonic internalization but had no role in agonist-induced internalization. Interestingly, introduction of either a YX(2)phi or YX(3)phi motif in the carboxyl-terminal tail of TPalpha induced tonic internalization of this receptor. Additional analysis revealed that tonically internalized TPbeta undergoes recycling back to the cell surface suggesting that tonic internalization may play a role in maintaining an intracellular pool of TPbeta. Our data demonstrate the presence of distinct signals for tonic and agonist-induced internalization of TPbeta and represent the first report of a YX(3)phi motif involved in tonic internalization of a cell surface receptor.
Mixture Proportioning and Properties of Self-Consolidating Lightweight Concrete Containing Glass Powder (2005)

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Apparent episodicity of magmatic activity based on radiometric age determination: A section in <i>The United States Geological Survey in Alaska: Accomplishments during 1980</i> (1982)

Results of recent potassium-argon age studies in the Chignik region, Alaska, (Wilson, 1980; Wilson and others, 1982) have suggested a distinct episodicity in igneous activity during Tertiary time. To date work on the Aleutian magmatic arc indicates that plutonic activity took place along the present outer Pacific margin and in the northern Alaska-Aleutian Range batholith (Reed and Lanphere, 1973; Kienle and Turner, 1976; DeLong and others, 1978) in latest Cretaceous and earliest Tertiary time (70-58 m.y.) and was followed by a hiatus lasting until late Eocene ( 45 m.y~) time. Late Eocene to earliest Miocene ( 45-20 m.y.) magmatic activity was followed by a middle Miocene hiatus (10 m.y.). Since that time, magmatic activity in the Aleutian arc has been continuous.
Dual Connectivity-Based Mobility Management and Data Split Mechanism in 4G/5G Cellular Networks (2020)

The emerging 5G mobile network technology is envisioned to provide an efficient platform to interconnect machines, objects, and devices in addition to interconnecting people. Equipped with peak data rates, low latency, and massive capacity, 5G technology will empower new user experiences such as virtual reality and augmented reality and provide new service areas such as connecting massive IoT. Dual connectivity is an important feature where 5G systems are overlaid on the existing 4G core network. In this paper, we propose an MM (mobility management) algorithm to efficiently perform handovers between 4G and 5G RATs (radio access technologies). Our proposed MM algorithm utilizes the strength of DC (dual connectivity) for MM as DC inherently has lesser amount of handover interruption as compared to conventional hard handover. Our MM scheme suggests appropriate data split mechanism between 4G and 5G RATs based on application-specific strategy. We provide a framework based on probabilistic model checking that leverages DC and suggests strategy-based data split mechanism for a mobile user for a variety of market verticals. We model the system as MDP (Markov decision process) where a controller breaks all the nondeterminism in the MDP based on reward calculations. The proposed framework is implemented in a well known model checker and various scenarios are used to assess its applicability.
ChemInform Abstract: A NEW SYNTHESIS OF PYRAZINES (1983)

Abstract Aus den Schiffschen Basen (I) werden durch cyclisierende Reduktion mit Natrium und anschließende Dehydrierung mit Sauerstoff die Pyrazine (II) hergestellt.
Inactivated tumor suppressor Rb by nitric oxide promotes mitosis in human breast cancer cells (2004)

Inactivation of tumor suppressor protein retinoblastoma (Rb) is important mechanism for the G1/S transition during cell cycle progression. Human breast cancer cells T47D release great amount of nitric oxide (NO), but its relation to tumor suppressor Rb is unknown. In this study, it is shown that NO induces phosphorylation and inactivation of Rb tumor suppressor protein, increasing G2/M phase and cell proliferation of breast cancer cells T47D. NO did not induce changes in p53 ser-15 phosphorylation, the most phosphorylated site of p53 during its activation. These data indicate that NO induces cell proliferation through the Rb pathway. NO phosphorylates and inactivates tumor suppressor protein Rb inducing mitosis by the p53 independent pathway in breast cancer cell.
Biofilm Formation and Sloughing in<i>Serratia marcescens</i>Are Controlled by Quorum Sensing and Nutrient Cues (2005)

We describe here a role for quorum sensing in the detachment, or sloughing, of Serratia marcescens filamentous biofilms, and we show that nutrient conditions affect the biofilm morphotype. Under reduced carbon or nitrogen conditions, S. marcescens formed a classical biofilm consisting of microcolonies. The filamentous biofilm could be converted to a microcolony-type biofilm by switching the medium after establishment of the biofilm. Similarly, when initially grown as a microcolony biofilm, S. marcescens could be converted back to a filamentous biofilm by increasing the nutrient composition. Under high-nutrient conditions, an N-acyl homoserine lactone quorum-sensing mutant formed biofilms that were indistinguishable from the wild-type biofilms. Similarly, other quorum-sensing-dependent behaviors, such as swarming motility, could be rendered quorum sensing independent by manipulating the growth medium. Quorum sensing was also found to be involved in the sloughing of the filamentous biofilm. The biofilm formed by the bacterium consistently sloughed from the substratum after approximately 75 to 80 h of development. The quorum-sensing mutant, when supplemented with exogenous signal, formed a wild-type filamentous biofilm and sloughed at the same time as the wild type, and this was independent of surfactant production. When we removed the signal from the quorum-sensing mutant prior to the time of sloughing, the biofilm did not undergo significant detachment. Together, the data suggest that biofilm formation by S. marcescens is a dynamic process that is controlled by both nutrient cues and the quorum-sensing system.
Study of Gate Junction Temperature in GaAs pHEMTs Using Gate Metal Resistance Thermometry (2013)

Gate junction temperature is presented as the crucial parameter for modeling thermal degradation in GaAs device reliability studies, and sufficient for modeling the impact of temperature on device terminal characteristics. Gate metal resistance thermometry (GMRT) is applied to a GaAs pseudomorphic high-electron mobility transistor to measure its gate junction temperature. It is found that gate leakage current due to impact ionization can interfere with dc GMRT measurements. To the best of our knowledge, for the first time it is demonstrated that this can be largely avoided by instead applying an ac version of GMRT. However, the dynamic resistance of the gate leakage current path can interfere with ac GMRT. Measurements and thermal finite element method simulations of devices at constant power dissipation conclude that the bias dependence of the channel heat source profile affects the gate junction temperature. A parameter extraction technique is presented and used in device lifetime calculations to demonstrate MTTF variations of more than an order of magnitude (despite fixed power) due to bias-dependent self-heating.
COVID-19 Pandemic: Review of Contemporary and Forthcoming Detection Tools (2021)

Recent severe acute respiratory syndrome 2 (SARS-CoV-2) known as COVID-19, presents a deadly challenge to the global healthcare system of developing and developed countries, exposing the limitations of health facilities preparedness for emerging infectious disease pandemic. Opportune detection, confinement, and early treatment of infected cases present the first step in combating COVID-19. In this review, we elaborate on various COVID-19 diagnostic tools that are available or under investigation. Consequently, cell culture, followed by an indirect fluorescent antibody, is one of the most accurate methods for detecting SARS-CoV-2 infection. However, restrictions imposed by the regulatory authorities prevented its general use and implementation. Diagnosis via radiologic imaging and reverse transcriptase PCR assay is frequently employed, considered as standard procedures, whereas isothermal amplification methods are currently on the verge of clinical introduction. Notably, techniques such as CRISPR-Cas and microfluidics have added new dimensions to the SARS-CoV-2 diagnosis. Furthermore, commonly used immunoassays such as enzyme-linked immunosorbent assay (ELISA), lateral flow immunoassay (LFIA), neutralization assay, and the chemiluminescent assay can also be used for early detection and surveillance of SARS-CoV-2 infection. Finally, advancement in the next generation sequencing (NGS) and metagenomic analysis are smoothing the viral detection further in this global challenge.
Plantwide Design and Control of Processes with Inerts. 3. Intermediate Inerts (1998)

In this final paper of a series that explores the design and control of processes containing inert components we study five strategies for the removal of intermediate inerts. It is shown that the best structure for the case of intermediate inerts uses a direct distillation sequence where the reactant is separated first (and recycled) and then the inert is separated from the product.
Anticancer kinase inhibitors impair intracellular viral trafficking and exert broad-spectrum antiviral effects (2017)

Global health is threatened by emerging viral infections, which largely lack effective vaccines or therapies. Targeting host pathways that are exploited by multiple viruses could offer broad-spectrum solutions. We previously reported that AAK1 and GAK, kinase regulators of the host adaptor proteins AP1 and AP2, are essential for hepatitis C virus (HCV) infection, but the underlying mechanism and relevance to other viruses or in vivo infections remained unknown. Here, we have discovered that AP1 and AP2 cotraffic with HCV particles in live cells. Moreover, we found that multiple viruses, including dengue and Ebola, exploit AAK1 and GAK during entry and infectious virus production. In cultured cells, treatment with sunitinib and erlotinib, approved anticancer drugs that inhibit AAK1 or GAK activity, or with more selective compounds inhibited intracellular trafficking of HCV and multiple unrelated RNA viruses with a high barrier to resistance. In murine models of dengue and Ebola infection, sunitinib/erlotinib combination protected against morbidity and mortality. We validated sunitinib- and erlotinib-mediated inhibition of AAK1 and GAK activity as an important mechanism of antiviral action. Additionally, we revealed potential roles for additional kinase targets. These findings advance our understanding of virus-host interactions and establish a proof of principle for a repurposed, host-targeted approach to combat emerging viruses.
Structural insight into industrially relevant glucoamylases: flexible positions of starch-binding domains (2018)

Glucoamylases are one of the most important classes of enzymes in the industrial degradation of starch biomass. They consist of a catalytic domain and a carbohydrate-binding domain (CBM), with the latter being important for the interaction with the polymeric substrate. Whereas the catalytic mechanisms and structures of the individual domains are well known, the spatial arrangement of the domains with respect to each other and its influence on activity are not fully understood. Here, the structures of three industrially used fungal glucoamylases, two of which are full length, have been crystallized and determined. It is shown for the first time that the relative orientation between the CBM and the catalytic domain is flexible, as they can adopt different orientations independently of ligand binding, suggesting a role as an anchor to increase the contact time and the relative concentration of substrate near the active site. The flexibility in the orientations of the two domains presented a considerable challenge for the crystallization of the enzymes.
[beta]-Aminobutyric Acid Induces the Accumulation of Pathogenesis-Related Proteins in Tomato (Lycopersicon esculentum L.) Plants and Resistance to Late Blight Infection Caused by Phytophthora infestans (1994)

Tomato (Lycopersicon esculentum L.) plants were sprayed with aqueous solutions of isomers of aminobutyric acid and were either analyzed for the accumulation of pathogenesis-related (PR) proteins or challenged with the late blight fungal agent Phytophthora infestans. The [beta] isomer of aminobutyric acid induced the accumulation of high levels of three proteins: P14a, [beta]-1,3 glucanase, and chitinase. These proteins either did not accumulate or accumulated to a much lower level in [alpha]- or [gamma]-aminobutyric acid-treated plants. Plants pretreated with [alpha]-, [beta]-, and [gamma]-aminobutyric acid were protected up to 11 d to an extent of 35, 92, and 6%, respectively, against a challenge infection with P. infestans. Protection by [beta]-aminobutyric acid was afforded against the blight even when the chemical was applied 1 d postinoculation. Examination of ethylene evolution showed that [alpha]-aminobutyric acid induced the production of 3-fold higher levels of ethylene compared with [beta]-aminobutyric acid, whereas [gamma]-aminobutyric acid induced no ethylene production. In addition, silver thiosulfate, a potent inhibitor of ethylene action, did not abolish the resistance induced by [beta]-aminobutyric acid. The results are consistent with the possibility that [beta]-aminobutyric acid protects tomato foliage against the late blight disease by a mechanism that is not mediated by ethylene and that PR proteins can be involved in induced resistance.
Epidiolex as adjunct therapy for treatment of refractory epilepsy: a comprehensive review with a focus on adverse effects (2019)

Medically refractory epilepsy remains an area of intense clinical and scientific interest since a significant porportion of patients continue to suffer from debilitating seizures despite available therapies. In this setting, recent studies have focused on assessing the benefits of cannabidiol (CBD)-enriched cannabis, a plant based product without psychoactive properties which has been shown to decrease seizure frequency in animal models. More recently, several randomized controlled and open label trials have studied the effects of Epidiolex, a 99% pure oral CBD extract, on patients with refractory epilepsy. This in turn has led to the FDA approval of and more recently, to the Drug Enforcement Administration's placement of Epidiolex into schedule V of the Controlled Substances Act (CSA). In this review, we summarize the major findings of several recent large-scale studies using this product with a focus on its adverse effects.
DDD: A New Ensemble Approach for Dealing with Concept Drift (2011)

Online learning algorithms often have to operate in the presence of concept drifts. A recent study revealed that different diversity levels in an ensemble of learning machines are required in order to maintain high generalization on both old and new concepts. Inspired by this study and based on a further study of diversity with different strategies to deal with drifts, we propose a new online ensemble learning approach called Diversity for Dealing with Drifts (DDD). DDD maintains ensembles with different diversity levels and is able to attain better accuracy than other approaches. Furthermore, it is very robust, outperforming other drift handling approaches in terms of accuracy when there are false positive drift detections. In all the experimental comparisons we have carried out, DDD always performed at least as well as other drift handling approaches under various conditions, with very few exceptions.
Stable T-p53 complexes are not required for replication of simian virus 40 in culture or for enhanced phosphorylation of T antigen and p53 (1991)

We generated a number of simian virus 40 (SV40) mutants with single amino acid substitutions in T antigen between residues 388 and 411. All but one mutant (398LV) replicated like wild-type SV40 and gave rise to normal-size plaques. Three different mutations at residue 402 (Asp to Glu, Asn, or His) totally prevented the formation of stable complexes with the cellular protein p53 in monkey cells but had no effect on virus replication. Only one other mutation in this region, involving residue 401 (Met to Thr), slightly inhibited the formation of T-monkey p53 complexes. The three mutant T antigens with substitutions at residue 402 also formed no stable complexes with human p53 but generated low levels of complexes with mouse p53. These results indicate that residue 402 is critical for binding to monkey and human p53 proteins and is important for binding to mouse p53. We suggest that it is one of several points of contact. In cells infected with any one of the three residue 402 mutant viruses. T antigen and p53 became increasingly phosphorylated, as they were in cells infected with wild-type virus. Our data therefore show that stable T-p53 complexes are not required for replication of SV40 in culture or for enhanced phosphorylation of either protein.
Water-Soluble and Biocompatible Sono/Photosensitizer Nanoparticles for Enhanced Cancer Therapy (2010)

SL052-NPs greatly improved the physicochemical properties of SL052 without modifying its chemical structure, allowing for deep-site cancer drug delivery, imaging for diagnosis, and ultrasound or photocontrolled localized cancer therapy.
Development of 68Ga generator at ANSTO (2011)

A 68 Ge/ 68 Ga generator combined with automated 68 Ga eluate purification unit was developed to produce 68 Ga solution suitable for labelling peptide ligands for PET radiopharmaceutical applications. The sorbent of a Ti-Zr ceramic structure [1] was used as a generator column packing material. 68 Ga eluate of around 5 mL volume in 0.1 M HCl solution was purified on a small cation exchanger column with an aqueous alcohol solution mixture of hydrochloric acid, ascorbic acids and halide salts. An alkali solution was used for elution of 68 Ga from the ion exchange resin column to obtain a purified 68 Ga solution which is conditioned with acidic solutions to obtain a final 68 Ga product of pH=3-4 in 0.75 mL 0.5 M NaCl or 0.5 M sodium acetate solution. The organic solvent free 68 Ga solution product of acidity suitable for coordination chemistry based labelling of the peptide ligands was successfully used for preparation of DOTATATE and DOTATOC PET radiopharmaceuticals. \n\nThe process of 68 Ga elution from the generator followed by 68 Ga eluate purification was performed using a low-cost automation bench-top system. [2] This system is designed based on the timing sequence of seven processing steps without feedback control. The variable flow rate of eluents used for elution/purification in this system also ensure the optimisation of operating times with respect to different adsorption/ desorption kinetics of 68 Ga ion species, which is controlled by the sorbent and ion exchange resin used in the generator and purification columns. © 2011, Medknow publication
Space-Based Laser Communications Break Threshold (2016)

Recent and upcoming deployments of satellite laser communication systems are bringing Internet-like speeds for data transmission in space. The result could be a revolution in communication, both on Earth and across the solar system.
Resorufin in the Channels of Zeolite L (1998)

Zeolite L containing the resorufin anion (Res-) in its anionic framework can be prepared by incorporating the neutral resorufin molecule (ResH) from the gas phase and then exchanging the protons with potassium ions which leads to dark violet colored microcrystals. The reversibility of the deprotonation/protonation reaction of resorufin can be monitored by measuring the UV/vis absorption spectrum of the samples. The absorption spectra of Res- and ResH and their solvent dependence was interpreted using the EHMO-EDiT theory. While Res- is strongly fluorescent in solution, the fluorescence is completely quenched when Res- is located inside the channels of potassium zeolite L. This allows the investigation of the exit kinetics of the resorufin molecules as a function of the size of the solvent molecules which enter the zeolite channels and displace the incorporated resorufin molecules irreversibly. The following series was found for the displacement rate: water ≫ methanol > ethanol > 1-propanol ≳ 1-butanol. Three cases can be distinguished concerning the mechanism of the displacement process: In case 1 the solvent molecules can pass a dye molecule inside the channel easily. For this case the exit kinetics can be explained by a homogeneous Markoff chain. In case 2 the solvent molecules are considerably hindered when passing a dye molecule inside the channel, and in case 3 the solvent molecules are too large to pass a dye molecule and, hence, the exit rate of dye molecules is zero. While water corresponds to case 1, 1-butanol can be assigned to case 3 and may therefore be used to remove resorufin molecules or molecules with similar properties from the outer surfaces of zeolite L without displacing the intercalated molecules.
Laser-scribed graphene presents an opportunity to print a new generation of disposable electrochemical sensors (2014)

Graphene application within electrochemical sensing has been widely reported, but mainly as a composite, which adds summative effects to an underlying electrode. In this work we report the use of laser-scribed graphene as a distinct electrode patterned on a non-conducting flexible substrate. The laser-scribed graphene electrode compared favourably to established carbon macroelectrodes when evaluating both inner sphere and outer sphere redox probes, providing promise of extensive utility as an electrochemical sensor. The laser-scribed graphene electrode demonstrated the fastest heterogeneous electron transfer rate of all the electrodes evaluated with a k(0) of 0.02373 cm s(-1) for potassium ferricyanide, which exceeds commercially available edge plane pyrolytic graphite at 0.00260 cm s(-1), basal plane pyrolytic graphite at 0.00033 cm s(-1) and the very slow and effectively irreversible electrochemistry observed using single layer graphene. Finally and most significantly, a proof of principle system was fabricated using the laser-scribed graphene as working electrode, counter electrode and underlying base for the Ag/AgCl reference electrode, all in situ on the same planar flexible substrate, removing the requirement of macroscale external electrodes. The planar three electrode format operated with the same optimal electrode characteristics. Furthermore, the fabrication is inexpensive, scalable and compatible with a disposable biosensor format, considerably widening the potential applications in electrochemical bio-sensing for laser-scribed graphene.