gebhart/patrepeval huggingface dataset:
Abstract 1769: Significant in vivo activity of an APE1/Ref-1 redox inhibitor, E3330, alone and in combination with Bevacizumab in a glioblastoma mouse model analyzed by a whole slide digital imaging system and quantitative immunohistochemistry (2012)

Abstract Human apurinic endonuclease/redox factor 1 (APE1/Ref-1) mediates the repair of baseless sites in DNA caused by alkylation and oxidative DNA damage as well as regulates the function of various transcription factors (TF) under redox signaling control (p53, NFkB, HIF-1, AP-1, and others). High levels of APE1 expression have been reported in numerous cancers (glioblastoma, ovarian, pancreatic, prostate, and others) such that APE1 is an emerging target for a variety of novel anticancer drugs. E3330 targets the redox signaling function of APE1 and its activity was studied in vivo using a glioblastoma xenograft mouse model. This preclinical xenograft model evaluated the use of dual anti-angiogenic agents, Bevacizumab (Bev) and E3330, in glioblastoma implanted Nude mice. Four mice groups were used to determine drug effects: E3330, Bev, a combination of E3330 and Bev, and an untreated vehicle control group. Immunohistochemistry (IHC) was used to predict the effectiveness of treatment for glioblastoma based on caspase-3, Ki67, and CD31 biomarker expression. IHC slides were quantified using both a traditional pathology hand count and an image system analysis. The positive pixel data closely mirrored the hand count for all three biomarkers. At the combined dosage, hand count data demonstrated that CD31 levels decreased significantly from the vehicle control group. Ki67 decreased slightly, and caspase-3 was not increased in any of the drug treatment groups. While each drug independently had anti-angiogenic effects, the combined drug group, E3330 and Bev, had anti-angiogenic effects that were greatly enhanced. These results support previous studies demonstrating the anti-angiogenic activity of E3330 and its enhancement of Bevacizumab. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 1769. doi:1538-7445.AM2012-1769
Hyaluronan Hybrid Cooperative Complexes as a Novel Frontier for Cellular Bioprocesses Re-Activation (2016)

Hyaluronic Acid (HA)-based dermal formulations have rapidly gained a large consensus in aesthetic medicine and dermatology. HA, highly expressed in the Extracellular Matrix (ECM), acts as an activator of biological cascades, stimulating cell migration and proliferation, and operating as a regulator of the skin immune surveillance, through specific interactions with its receptors. HA may be used in topical formulations, as dermal inducer, for wound healing. Moreover, intradermal HA formulations (injectable HA) provide an attractive tool to counteract skin aging (e.g., facial wrinkles, dryness, and loss of elasticity) and restore normal dermal functions, through simple and minimally invasive procedures. Biological activity of a commercially available hyaluronic acid, Profhilo®, based on NAHYCO™ technology, was compared to H-HA or L-HA alone. The formation of hybrid cooperative complexes was confirmed by the sudden drop in η0 values in the rheological measurements. Besides, hybrid cooperative complexes proved stable to hyaluronidase (BTH) digestion. Using in vitro assays, based on keratinocytes, fibroblasts cells and on the Phenion® Full Thickness Skin Model 3D, hybrid cooperative complexes were compared to H-HA, widely used in biorevitalization procedures, and to L-HA, recently proposed as the most active fraction modulating the inflammatory response. Quantitative real-time PCR analyses were accomplished for the transcript quantification of collagens and elastin. Finally immunofluorescence staining permitted to evaluate the complete biosynthesis of all the molecules investigated. An increase in the expression levels of type I and type III collagen in fibroblasts and type IV and VII collagen in keratinocytes were found with the hybrid cooperative complexes, compared to untreated cells (CTR) and to the H-HA and L-HA treatments. The increase in elastin expression found in both cellular model and in the Phenion® Full Thickness Skin Model 3D also at longer time (up to 7 days), supports the clinically observed improvement of skin elasticity. The biomarkers analyzed suggest an increase of tissue remodeling in the presence of Profhilo®, probably due to the long lasting release and the concurrent action of the two HA components.
High-resolution image reconstruction method for time-of-flight positron emission tomography (2000)

We present a new image reconstruction method for time-of-flight positron emission tomography (TOF-PET). The TOF-PET measurement system is modelled using the continuous-discrete mapping model, and images are reconstructed using an algebraic technique. The proposed method can produce images with better spatial resolution than conventional methods based on the filtered backprojection method. Numerical simulation results show that accurate modelling of the measurement system improves the spatial resolution and the contrast recovery, while the utilization of TOF information improves the signal-to-noise ratios of images.
Electrostatic impact-drive microactuator (2002)

A fully packagable micromachined actuator was developed for generating precise but unlimited displacement. A suspended silicon mass is encapsulated between glass plates and driven by electrostatic force. By hitting a stopper, it generates impact force to drive the whole actuator in a small step (/spl sim/10 nm). It is a micromachined and electrostatic version of the impact-drive actuator.
All-dielectric multiple quantum well active metasurfaces (2020)

We report a design of an all-dielectric Mie-resonant active metasurface, which exhibits a high reflectance (>45%) and a broad tunable phase shift at an operation wavelength of 1550 nm. The proposed design can be used for the realization of two-dimensional active metasurfaces.
Optimal control of multiple bit rates for streaming media (2004)

Abstract — Perhaps the major technical problem in streaming media on demand over the Internet is the need to adapt to changing network conditions. Today’s commercial streaming media systems rely on Multi Bit Rate coding for adaptation. However, existing algorithms are empirical and often fail in a dynamic network. In this paper, we extend our optimal coding rate control framework and address the unique problems posed by the MBR stream switching constraints. A purely client-driven solution is provided, which achieves three goals: low startup delay (much less than 1 s even without bursting), continuous playback in the face of severe congestion, and maximal quality and smoothness over the entire streaming session. We argue that our algorithm complements any transport protocol, and we demonstrate that it works effectively with both TCP and TFRC transport protocols. Finally, we demonstrate that our algorithm is robust against data loss and delay. I.
Circulating p53 antibodies, p53 gene mutational profile and product accumulation in esophageal squamous-cell carcinoma in India (2000)

Esophageal cancer (EC) in the Indian population presents in advanced stages with poor prognosis and warrants the identification of a non-invasive marker for early detection and better prognostic assessment. We have previously reported high prevalence of p53 protein accumulation in esophageal squamous-cell carcinomas (ESCCs). The present study was designed to determine (i) if esophageal cancer patients elicit a humoral immune response to intra-tumoral p53 protein accumulation and (ii) their relationship with p53 gene mutations. The goal was to compare the cellular events, p53 protein accumulation and gene mutations with the presence of serum anti-p53 antibodies (p53-Abs) and to assess the utility of serological p53-Ab analysis as a surrogate marker for p53 alterations in esophageal cancer. A high prevalence of circulating p53-Abs was observed in 36 of 60 (60%) ESCC patients. In a subset of 44 ESCCs, exons 5-9 of the p53 gene were examined for mutations by PCR and direct sequencing of PCR products. Mutational data have been correlated with p53-Abs and p53 protein accumulation in ESCCs. Circulating p53-Abs in ESCC patients were significantly associated with intra-tumoral p53 protein accumulation (p=0.0005). A strong correlation observed between humoral immune response against p53 protein, missense gene mutations and protein accumulation warrants the application of serological p53-Abs as a non-invasive surrogate marker in screening high-risk populations for early detection of malignancy.
1004 THE DUAL ROLE OF MANNITOL AS OSMOPROTECTANT AND PHOTOASSIMILATE IN CELERY (1994)

Mannitol, a six carbon sugar alcohol, is widely distributed in nature and is a major phloem-translocated photoassimilate in celery. II may also function as a compatible osmolyte providing stress tolerance. Until recently, little was known about the route of mannitol catabolism in sink tissues of higher plants. An enzyme. mannitol dehydrogenase. (MDH) that oxidizes mannitol to mannose utilizing NAD as the electron acceptor was discovered (Arch. Biochem. Biophys. 1991. 298:612-619) in “sink” tissues of celery and celeriac plants. The activity of the enzyme is inversely related to tissue mannitol concentration in various parts of celery plants suggesting a role for the enzyme in mannitol catabolism. In osmostressed celery plants, the activity of the enzyme in sink tissues decreases as mannitol accumulates. Celery cells growing heterotrophically in suspension culture utilize either sucrose or mannitol as the sole carbon source and grow equally well on either carbohydrate. Mannitol-grown cells contain more MDI-I activity than sucrose-grown cells, and the activity of the enzyme is correlated with the rate of depletion of mannitol from the culture medium. Cells growing on mannitol contain an internal pool of mannitol but little sugar. Cells growing on sucrose contain internal sugar pools but no mannitol. Mannitol-grown cells are also more salt tolerant than cells grown on sucrose. Our laboratory is involved in studies of the physiological role of the mannitol oxidizing enzyme in regulating mannitol utilization and the role of the enzyme in regulating mannitol pool size during salt and osmostress in both celery plants and celery suspension cultures. Current studies on the molecular control of expression of the enzyme will be discussed.
Low frequency energy scavenging using sub-wave length scale acousto-elastic metamaterial (2014)

This letter presents the possibility of energy scavenging (ES) utilizing the physics of acousto-elastic metamaterial (AEMM) at low frequencies (&lt;∼3KHz). It is proposed to use the AEMM in a dual mode (Acoustic Filter and Energy Harvester), simultaneously. AEMM’s are typically reported for filtering acoustic waves by trapping or guiding the acoustic energy, whereas this letter shows that the dynamic energy trapped inside the soft constituent (matrix) of metamaterials can be significantly harvested by strategically embedding piezoelectric wafers in the matrix. With unit cell AEMM model, we experimentally asserted that at lower acoustic frequencies (&lt; ∼3 KHz), maximum power in the micro Watts (∼35µW) range can be generated, whereas, recently reported phononic crystal based metamaterials harvested only nano Watt (∼30nW) power against 10KΩ resistive load. Efficient energy scavengers at low acoustic frequencies are almost absent due to large required size relevant to the acoustic wavelength. Here we report sub wave length scale energy scavengers utilizing the coupled physics of local, structural and matrix resonances. Upon validation of the argument through analytical, numerical and experimental studies, a multi-frequency energy scavenger (ES) with multi-cell model is designed with varying geometrical properties capable of scavenging energy (power output from ∼10µW – ∼90µW) between 0.2 KHz and 1.5 KHz acoustic frequencies.
Retrovirus Packaging Cells Expressing the <i>Mus dunni</i> Endogenous Virus Envelope Facilitate Transduction of CHO and Primary Hematopoietic Cells (1998)

Mus dunni endogenous virus (MDEV) infects a wide variety of cell types from many different species. To take advantage of this broad host range, we have constructed packaging cells (PD223) that produce virions bearing the MDEV envelope. PD223 cells are able to package Moloney murine leukemia virus-based vectors at a titer of 4 x 10(5) infectious units per ml in the absence of contaminating replication-competent retrovirus. Vectors packaged by PD223 cells are able to transduce CHO cells, which are resistant to transduction by many retroviruses, at >/=25-fold higher efficiency than vectors having other pseudotypes. A vector packaged by PD223 was found to be among the most efficient for transducing primary baboon and human CD34(+) cells.
Efficient routing and reconfiguration in virtualized HPC environments with vSwitch‐enabled lossless networks (2018)

Summary To meet the demands of communication‐intensive workloads in the cloud, virtual machines (VMs) should utilize low overhead network communication paradigms. In general, such paradigms enable VMs to directly communicate with the hardware by means of a passthrough technology like Single‐Root I/O Virtualization (SR‐IOV). However, when passthrough‐based virtualization is coupled with lossless interconnection networks, live migrations introduce scalability challenges due to the substantial network reconfiguration overhead. With these challenges in mind, we proposed a virtual switch (vSwitch) SR‐IOV architecture for InfiniBand in our previous work titled “Towards the InfiniBand SR‐IOV vSwitch Architecture”. In this paper, we first suggest solutions to rectify the space‐domain scalability issues that are present in vSwitch‐enabled subnets as a result of the VMs using dedicated layer‐two addresses. Then, we discuss routing strategies for virtualized environments using vSwitches and present a routing algorithm for Fat‐Trees. We also present a reconfiguration method that minimizes imposed reconfiguration overhead on Fat‐Trees. We perform an extensive evaluation of our prototype algorithms, and as vSwitch‐enabled hardware does not yet exist, we deduce from empirical observations by emulating vSwitches with existing hardware, as well as large‐scale simulations. Our results show significant reduction in the reconfiguration times as route recalculations can be eliminated, and for certain scenarios, the number of reconfiguration subnet management packets sent to switches is reduced from several hundred thousand down to a single one without degrading the routing quality.
Angular Approach Scanning Ion Conductance Microscopy (2016)

Scanning ion conductance microscopy (SICM) is a super-resolution live imaging technique that uses a glass nanopipette as an imaging probe to produce three-dimensional (3D) images of cell surface. SICM can be used to analyze cell morphology at nanoscale, follow membrane dynamics, precisely position an imaging nanopipette close to a structure of interest, and use it to obtain ion channel recordings or locally apply stimuli or drugs. Practical implementations of these SICM advantages, however, are often complicated due to the limitations of currently available SICM systems that inherited their design from other scanning probe microscopes in which the scan assembly is placed right above the specimen. Such arrangement makes the setting of optimal illumination necessary for phase contrast or the use of high magnification upright optics difficult. Here, we describe the designs that allow mounting SICM scan head on a standard patch-clamp micromanipulator and imaging the sample at an adjustable approach angle. This angle could be as shallow as the approach angle of a patch-clamp pipette between a water immersion objective and the specimen. Using this angular approach SICM, we obtained topographical images of cells grown on nontransparent nanoneedle arrays, of islets of Langerhans, and of hippocampal neurons under upright optical microscope. We also imaged previously inaccessible areas of cells such as the side surfaces of the hair cell stereocilia and the intercalated disks of isolated cardiac myocytes, and performed targeted patch-clamp recordings from the latter. Thus, our new, to our knowledge, angular approach SICM allows imaging of living cells on nontransparent substrates and a seamless integration with most patch-clamp setups on either inverted or upright microscopes, which would facilitate research in cell biophysics and physiology.
Using Relocatable Bitstreams for Fault Tolerance (2007)

The regular structure and addressing scheme for the Virtex-IIfamily of field programmable gate arrays (FPGAs) allows the relocation of partial bitstreams through direct bitstream manipulation. Our bitstream translation program relocates modules on an FPGA by changing the partial bitstream of the module. To take advantage of relocatable modules, three fault tolerant circuit designs are developed and tested. While operating through a fault, these designs provide support for efficient and transparent replacement of the faulty module with a relocated fault-free module. The architecture of the FPGA and static logic significantly constrain the placement of relocatable modules, especially when a microprocessor is placed on the FPGA.
A Leu<sub>554</sub>-to-Pro substitution completely abolishes the functional complementing activity of the Fanconi anemia (FACC) protein (1993)

Three cDNA transcripts corresponding to complementation group C of Fanconi anemia (FA) were recently cloned. We confirm that the correct reading frame was reported and that a protein of an apparent molecular mass of 60 kDa is translated. A T-to-C transition at base 1,661 in the open reading frame is the only change found to date in the FA(C) cell line, resulting in a codon substitution from leucine554 to proline. Using site directed in vitro mutagenesis, we demonstrate that this mutation completely abolishes the activity of the FACC protein as analyzed by functional complementation assay. The physiological significance of this mutation is thus confirmed.
Receptor Binding, Fusion Inhibition, and Induction of Cross-Reactive Neutralizing Antibodies by a Soluble G Glycoprotein of<i>Hendra Virus</i> (2005)

Hendra virus (HeV) and Nipah virus (NiV) are closely related emerging viruses comprising the Henipavirus genus of the Paramyxovirinae, which are distinguished by their ability to cause fatal disease in both animal and human hosts. These viruses infect cells by a pH-independent membrane fusion event mediated by their attachment (G) and fusion (F) glycoproteins. Previously, we reported on HeV- and NiV-mediated fusion activities and detailed their host-cell tropism characteristics. These studies also suggested that a common cell surface receptor, which could be destroyed by protease, was utilized by both viruses. To further characterize the G glycoprotein and its unknown receptor, soluble forms of HeV G (sG) were constructed by replacing its cytoplasmic tail and transmembrane domains with an immunoglobulin kappa leader sequence coupled to either an S-peptide tag (sG(S-tag)) or myc-epitope tag (sG(myc-tag)) to facilitate purification and detection. Expression of sG was verified in cell lysates and culture supernatants by specific affinity precipitation. Analysis of sG by size exclusion chromatography and sucrose gradient centrifugation demonstrated tetrameric, dimeric, and monomeric species, with the majority of the sG released as a disulfide-linked dimer. Immunofluorescence staining revealed that sG specifically bound to HeV and NiV infection-permissive cells but not to a nonpermissive HeLa cell line clone, suggesting that it binds to virus receptor on host cells. Preincubation of host cells with sG resulted in dose-dependent inhibition of both HeV and NiV cell fusion as well as infection by live virus. Taken together, these data indicate that sG retains important native structural features, and we further demonstrate that administration of sG to rabbits can elicit a potent cross-reactive neutralizing antibody response against infectious HeV and NiV. This HeV sG glycoprotein will be exceedingly useful for structural studies, receptor identification strategies, and vaccine development goals for these important emerging viral agents.
The Neural Dynamics of Facial Identity Processing: Insights from EEG-Based Pattern Analysis and Image Reconstruction (2018)

Uncovering the neural dynamics of facial identity processing along with its representational basis outlines a major endeavor in the study of visual processing. To this end, here, we record human electroencephalography (EEG) data associated with viewing face stimuli; then, we exploit spatiotemporal EEG information to determine the neural correlates of facial identity representations and to reconstruct the appearance of the corresponding stimuli. Our findings indicate that multiple temporal intervals support: facial identity classification, face space estimation, visual feature extraction and image reconstruction. In particular, we note that both classification and reconstruction accuracy peak in the proximity of the N170 component. Further, aggregate data from a larger interval (50-650 ms after stimulus onset) support robust reconstruction results, consistent with the availability of distinct visual information over time. Thus, theoretically, our findings shed light on the time course of face processing while, methodologically, they demonstrate the feasibility of EEG-based image reconstruction.
Gravity enhanced acoustic levitation method and apparatus (1986)

An acoustic levitation system is provided for acoustically levitating an object by applying a single frequency from a transducer into a resonant chamber surrounding the object. The chamber includes a stabilizer location along its height, where the side walls of the chamber are angled so they converge in an upward direction. When an acoustic standing wave pattern is applied between the top and bottom of the chamber, a levitation surface within the stabilizer does not lie on a horizontal plane, but instead is curved with a lowermost portion near the vertical axis of the chamber. As a result, an acoustically levitated object is urged by gravity towards the lowermost location on the levitation surface, so the object is kept away from the side walls of the chamber.
<title>Holographic center high-mounted stoplight</title> (1991)

The holographic center high mounted stoplight achieves the required performance of a conventional center high mounted stoplight, but without the obstruction to the driver's view through the rear window. A lamp located in the roof illuminates a transmission image hologram mounted on the inner surface of the automobile rear window. The hologram strongly diffracts the incident light rearward but is transparent to the driver looking in his rearview mirror.