gebhart/patrepeval huggingface dataset:
Nucleotide sequence of cloned cDNA of human apolipoprotein A-l (1983)

ApoA-I is the major human HDL apoprotein. By oligonucleotide hybridization, we have isolated 5 dscDNA clones to human hepatic apo A-I mRNA. One of these clones (pA1-3) was completely sequenced. It has 878 bp plus a poly A tail of 48 and includes all the coding and 3'-untranslated regions of the mRNA and part of the 5'-untranslated region. It predicts a peptide sequence of 267 amino acids (including the 24 amino acid prepropeptides) which is very similar to the sequence reported by Brewer et al., (1978) Biochem. Biophys. Res. Commun. 80:623-630. The predicted signal peptide sequence is highly homologous to the rat apoA-I signal peptide. There is no evidence for any internally repeated segments in apoA-I either at the amino acid or at the DNA level. Using pA1-3 as a probe, we have detected on Northern gels apo A-I mRNA sequences of approximately 1100 nucleotides in human hepatic and baboon hepatic and intestinal RNAs, but not in RNAs from baboon skeletal muscle, kidney or spleen. The demonstration of apo A-I mRNA sequences in specific organs is important to our concept of "reverse cholesterol transport".
On Generating Optimal Signal Probabilities for Random Tests: A Genetic Approach (1996)

Genetic Algorithms are robust search and optimization techniques. A Genetic Algorithm based approach for determining the optimal input distributions for generating random test vectors is proposed in the paper. A cost function based on the COP testability measure for determining the efficacy of the input distributions is discussed. A brief overview of Genetic Algorithms (GAs) and the specific details of our implementation are described. Experimental results based on ISCAS‐85 benchmark circuits are presented. The performance of our GAbased approach is compared with previous results. While the GA generates more efficient input distributions than the previous methods which are based on gradient descent search, the overheads of the GA in computing the input distributions are larger. To account for the relatively quick convergence of the gradient descent methods, we analyze the landscape of the COP‐based cost function. We prove that the cost function is unimodal in the search space. This feature makes the cost function amenable to optimization by gradient‐descent techniques as compared to random search methods such as Genetic Algorithms.
High resolution imaging of objects at Ka band (1995)

A coherent wideband millimeter wave (mmW) imaging radar which operates in two different imaging modes is briefly described. The principles of two-dimensional (2-D) high resolution imaging are introduced. The image reconstruction algorithm together with image enhancement techniques are discussed. Some experiments imaging on both scaled aircraft model and full-size large scale vehicle are presented.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Anomalous Transverse Relaxation in <sup>1</sup>H Spectroscopy in Human Brain at 4 Tesla (1995)

Longitudinal (T1) and apparent transverse relaxation times (T2) of choline-containing compounds (Cho), creatine/phosphocreatine (Cr/PCr), and N-acetyl aspartate (NAA) were measured in vivo in human brain at 4 Tesla. Measurements were performed using a water suppressed stimulated echo pulse sequence with complete outside volume presaturation to improve volume localization at short echo times. T1-values of Cho (1.2 +/- 0.1 s), Cr (1.6 +/- 0.3 s), and NAA (1.6 +/- 0.2 s) at 4 Tesla in occipital brain were only slightly larger than those reported in the literature at 1.5 Tesla. Thus, TR will not adversely affect the expected enhancement of signal-to-noise at 4 Tesla. Surprisingly, apparent T2-values of Cho (142 +/- 34 ms), Cr (140 +/- 13 ms), and NAA (185 +/- 24 ms) at 4 Tesla were significantly smaller than those at 1.5 Tesla and further decreased when increasing the mixing interval TM. Potential contributing factors, such as diffusion in local susceptibility related gradients, dipolar relaxation due to intracellular paramagnetic substances and motion effects are discussed. The results suggest that short echo time spectroscopy is advantageous to maintain signal to noise at 4 Tesla.
Biological tissue characterization by magnetic induction spectroscopy (MIS): requirements and limitations (2003)

Magnetic induction spectroscopy (MIS) aims at the contactless measurement of the passive electrical properties (PEP) sigma, epsilon, and mu of biological tissues via magnetic fields at multiple frequencies. Whereas previous publications focus on either the conductive or the magnetic aspect of inductive measurements, this article provides a synthesis of both concepts by discussing two different applications with the same measurement system: 1) monitoring of brain edema and 2) the estimation of hepatic iron stores in certain pathologies. We derived the equations to estimate the sensitivity of MIS as a function of the PEP of biological objects. The system requirements and possible systematic errors are analyzed for a MIS-channel using a planar gradiometer (PGRAD) as detector. We studied 4 important error sources: 1) moving conductors near the PGRAD; 2) thermal drifts of the PGRAD-parameters; 3) lateral displacements of the PGRAD; and 4) phase drifts in the receiver. All errors were compared with the desirable resolution. All errors affect the detected imaginary part (mainly related to sigma) of the measured complex field much less than the real part (mainly related to epsilon and mu). Hence, the presented technique renders possible the resolution of (patho-) physiological changes of the electrical conductivity when applying highly resolving hardware and elaborate signal processing. Changes of the magnetic permeability and permittivity in biological tissues are more complicated to deal with and may require chopping techniques, e.g., periodic movement of the object.
cAMP-dependent protein kinase A is required for Schwann cell growth: Interactions between the cAMP and neuregulin/tyrosine kinase pathways (1997)

Schwann cell proliferation is stimulated by contact with neurons or exposure to growth factor ligands for tyrosine kinase receptors, effects of which are potentiated by cAMP. Here we show that treatment of rat Schwann cells with recombinant human glial growth factor 2 (rhGGF2), but not with other mitogenic factors, transiently increases intracellular cyclic AMP (cAMP), with maximal elevation at the G0/G1 boundary. The cAMP-dependent protein kinase (PKA) inhibitor H-89 strongly antagonized GGF- and neuron-induced Schwann cell proliferation, with maximum inhibition observed at G0/G1. H-89 also inhibited Schwann cell proliferation induced by growth factors that did not increase intracellular cAMP. Stimulation of Schwann cells with rhGGF2 resulted in 70-fold activation of MAP kinase; forskolin treatment resulted in a 50% decrease in MAP kinase activity but did not alter Raf-1 phosphorylation on Ser-43. These results demonstrate that the MAP kinase cascade represents an intersection between receptor tyrosine kinase and cAMP signaling pathways in Schwann cells and that PKA plays a critical role in Schwann cell cycle progression.
Rare-Earth Complexes of Ferrocene-Containing Ligands:  Visible-Light Excitable Luminescent Materials (2007)

The ferrocene-derivatives bis(ferrocenyl-ethynyl)-1,10-phenanthroline (Fc(2)phen) and ferrocenoyltrifluoroacetone (Hfta) have been used to synthesize ferrocene-containing rare-earth beta-diketonate complexes. The complexes [Ln(tta)(3)(Fc(2)phen)] and [Ln(fta)(3)(phen)] (where Ln = La, Nd, Eu, Yb) show structural similarities to the tris(2-thenoyltrifluoroacetonate)(1,10-phenanthroline)lanthanide(III) complexes, [Ln(tta)(3)(phen)]. The coordination number of the lanthanide ion is 8, and the coordination sphere can be described as a distorted dodecahedron. However, the presence of the ferrocene moieties shifts the ligand absorption bands of the rare-earth complexes to longer wavelengths so that the complexes can be excited not only by ultraviolet radiation but also by visible light of wavelengths up to 420 nm. Red photoluminescence is observed for the europium(III) complexes and near-infrared photoluminescence for the neodymium(III) and ytterbium(III) complexes. The presence of the ferrocene groups makes the rare-earth complexes hydrophobic and well-soluble in apolar organic solvents.
Thiocarbonyl chemistry in polymer science (2022)

This review highlights past and ongoing attempts to harness thiocarbonyl compounds in polymer chemistry, focussing on how the unique and multifaceted reactivity of these compounds enables the production of materials with tailored properties.
A Translinear RMS Detector for Embedded Test Of RF ICs (2005)

This paper presents a wide-bandwidth, high dynamic range, BiCMOS RF rms detector based on the dynamic translinear principle. A current-domain circuit carries out the main computation, and a circuit compensates for errors due to finite transistor gain. Wide-bandwidth input and output circuits allow connecting voltage-mode signals to the internal current-mode circuitry. Measurements on a prototype chip demonstrate that the circuit is suitable for embedded on-chip testing, particularly for "alternative test" of RF circuits.
Phospholipase A2 inhibitors protect against prion and Aβ mediated synapse degeneration (2010)

Our results are consistent with the hypothesis that PrP82-146 and Abeta1-42trigger abnormal activation of cytoplasmic phospholipase A2 resident within synapses, resulting in elevated levels of PAF and prostaglandin E2that cause synapse degeneration. Inhibitors of this pathway that can cross the blood brain barrier may protect against the synapse degeneration seen during Alzheimer's or prion diseases.
Advances in slope stability study on Permafrost area of Qinghai-Tibet Platean (2006)

Instability of natural and artificial slope for Permafrost area of Qinghai-Tibet Plateau is a kind of geological disaster phenomenon along with Qinghai-Tibet construction and operation.According to landslide environment,landslide of permafrost region will be divided into landslide of freezing soil and thawing soil,thaw slumping is representative thawing soil landslide.Taking thaw slumping as example,landslides mechanism of lubrication effect on sluggish water is put forward.Through similar model experiment,it is observed that deformation vertical to slope surface is composed of deformation of partially thaw settlement and frost heave.Frost heave deformation is not very obvious.Numerical simulation model of temperature field,deformation field has been built up.Deformation regulation of different depth in the course of freezing-thawing recycle is analyzed.It is observed that deformation mainly exists in shallow depth.Applying effective stress principle has derived safety factor unity formula.On this condition,stability analysis diagram of infinite slope of different slope angle,different water content condition has been drawn.As a result,two kinds of different evaluation methods of permafrost slope stability will be established.Finally,during the course of studying the topic and research direction have been pointed out.
Massively parallel in vivo enhancer assay reveals that highly local features determine the <i>cis</i> -regulatory function of ChIP-seq peaks (2013)

Transcription factors (TFs) recognize short sequence motifs that are present in millions of copies in large eukaryotic genomes. TFsmust distinguish their target binding sites from a vast genomic excess of spurious motif occurrences; however, it is unclear whether functional sites are distinguished from nonfunctional motifs by local primary sequence features or by the larger genomic context in which motifs reside. We used a massively parallel enhancer assay in living mouse retinas to compare 1,300 sequences bound in the genome by the photoreceptor transcription factor Cone-rod homeobox (Crx), to 3,000 control sequences. We found that very short sequences bound in the genome by Crx activated transcription at high levels, whereas unbound genomic regions with equal numbers of Crx motifs did not activate above background levels, even when liberated from their larger genomic context. High local GC content strongly distinguishes bound motifs from unbound motifs across the entire genome. Our results show that the cis-regulatory potential of TF-bound DNA is determined largely by highly local sequence features and not by genomic context.
Selective brain cooling: role of angularis oculi vein and nasal thermoreception (1997)

We have measured blood flows in the angularis oculi (AOV), facial, and jugular veins and temperatures in the carotid artery and near the hypothalamus in three lightly anesthetized sheep while body and nasal mucosal (Tnm) temperatures were varied independently. Above a threshold hypothalamic temperature (Thyp) of 39 degrees C both selective brain cooling (SBC) and AOV blood flow increased. For a given Thyp, the increase in AOV flow and SBC was inversely proportional to Tnm: low Tnm resulted in high AOV flow and SBC, whereas increasing Tnm attenuated both AOV flow and SBC. This decrease in AOV flow results in submaximal SBC, which does not concur with the hypothesis that SBC functions to protect a thermally vulnerable brain. The trigger for these changes in AOV blood flow was Tnm. Occlusion of the AOV during SBC showed that AOV flow accounted for over 80% of SBC. We conclude that SBC is not only a mechanism for reducing brain temperature but may also be a means of adjusting Thyp to facilitate the appropriate thermoregulatory responses.
Degradable Thermoresponsive Nanogels for Protein Encapsulation and Controlled Release (2011)

Reversible addition-fragmentation chain transfer (RAFT) polymerization technique was used for the fabrication of stable core cross-linked micelles (CCL) with thermoresponsive and degradable cores. Well-defined poly(2-methacryloyloxyethyl phosphorylcholine), poly(MPC) macroRAFT agent, was first synthesized with narrow molecular weight distribution via the RAFT process. These CCL micelles (termed as nanogels) with hydrophilic poly(MPC) shell and thermoresponsive core consisting of poly(methoxydiethylene glycol methacrylate) (poly(MeODEGM) and poly(2-aminoethyl methacrylamide hydrochloride) (poly(AEMA) were then obtained in a one-pot process by RAFT polymerization in the presence of an acid degradable cross-linker. These acid degradable nanogels were efficiently synthesized with tunable sizes and low polydispersities. The encapsulation efficiencies of the nanogels with different proteins such as insulin, BSA, and β-galactosidase were studied and found to be dependent of the cross-linker concentration, size of protein, and the cationic character of the nanogels imparted by the presence of AEMA in the core. The thermoresponsive nature of the synthesized nanogels plays a vital role in protein encapsulation: the hydrophilic core and shell of the nanogels at low temperature allow easy diffusion of the proteins inside out and, with an increase in temperature, the core becomes hydrophobic and the nanogels are easily separated out with entrapped protein. The release profile of insulin from nanogels at low pH was studied and results were analyzed using bicinchoninic assay (BCA). Controlled release of protein was observed over 48 h.
Mastoid vibration affects dynamic postural control during gait in healthy older adults (2017)

Vestibular disorders are difficult to diagnose early due to the lack of a systematic assessment. Our previous work has developed a reliable experimental design and the result shows promising results that vestibular sensory input while walking could be affected through mastoid vibration (MV) and changes are in the direction of motion. In the present paper, we wanted to extend this work to older adults and investigate how manipulating sensory input through mastoid vibration (MV) could affect dynamic postural control during walking. Three levels of MV (none, unilateral, and bilateral) applied via vibrating elements placed on the mastoid processes were combined with the Locomotor Sensory Organization Test (LSOT) paradigm to challenge the visual and somatosensory systems. We hypothesized that the MV would affect sway variability during walking in older adults. Our results revealed that MV significantly not only increased the amount of sway variability but also decreased the temporal structure of sway variability only in anterior-posterior direction. Importantly, the bilateral MV stimulation generally produced larger effects than the unilateral. This is an important finding that confirmed our experimental design and the results produced could guide a more reliable screening of vestibular system deterioration.
Towards organ printing: engineering an intra-organ branched vascular tree (2010)

It is not possible to engineer 3D thick tissue or organ constructs without effective vascularization. An effective intra-organ vascular system cannot be built by the simple connection of large-diameter vessels and microvessels. Successful engineering of functional human organs suitable for surgical implantation will require concomitant engineering of a 'built in' intra-organ branched vascular system. Organ printing enables biofabrication of human organ constructs with a 'built in' intra-organ branched vascular tree.
HPLC Characterization of Betalains from Plants in the Amaranthaceae (2005)

HPLC characterization of reversed-phase (RP) high-performance liquid chromatography (HPLC) has been widely used in separation and identification of plant pigments. An effective RP-HPLC-based method is established to systematically isolate, identify, and quantitate the betalain pigments in the plants of 37 species of eight genera in the Amaranthaceae. A total of 16 betacyanins and three betaxanthins are characterized mainly using the RP-HPLC method and also with the aid of mass spectroscopy. The identified betacyanins include eight amaranthine-types, six gomphrenin-types, and two betanin-types. They are also divided into six simple (nonacylated) betacyanins and 10 acylated betacyanins. Acylated betacyanins are identified as betanidin 5-O-beta-glucuronosylglucoside or betanidin 6-O-beta-glucoside acylated with ferulic, p-coumaric, or 3-hydroxy-3-methylglutaric acids. Three betaxanthins were separated from Celosia species in the Amaranthaceae and identified to be immonium conjugates of betalamic acid with dopamine, 3-methoxytyramine, and (S)-tryptophan; the latter two are found to be new betaxanthins from plants.
A (heat) shock to the system promotes peripheral nerve regeneration (2011)

Peripheral nerves are easily damaged, resulting in loss of motor and sensory function. Recovery of motor and sensory function after peripheral nerve injury is suboptimal, even after appropriate surgical repair. This is due to the slow rate of axonal elongation during regeneration and atrophic changes that occur in denervated Schwann cells and target muscle with proximal lesions. One way to solve this problem is to accelerate the rate at which the axons regenerate. In this issue of the JCI, Ma and colleagues show that this can be achieved in mice by overexpression of heat shock protein 27, providing hope for enhanced functional recovery in patients after peripheral nerve damage.
Infiltration of forkhead box P3-expressing cells in small intestinal mucosa in coeliac disease but not in type 1 diabetes (2008)

Because the role of regulatory T cells in the intestinal inflammation is unknown in coeliac disease (CD) and type 1 diabetes (T1D), the expression of forkhead box P3 (FoxP3), CD25, transforming growth factor-beta, interferon (IFN)-gamma, interleukin (IL)-4, IL-8, IL-10, IL-15 and IL-18 was measured by quantitative reverse transcription-polymerase chain reaction in the small intestinal biopsies from paediatric patients with active or potential CD, T1D and control patients. The numbers of FoxP3- and CD25-expressing cells were studied with immunohistochemistry. Enhanced intestinal expressions of FoxP3, IL-10 and IFN-gamma mRNAs were found in active CD when compared with controls (P-values < 0.001, 0.004, <0.001). In potential CD, only the expression of IFN-gamma mRNA was increased. The numbers of FoxP3-expressing cells were higher in active and potential CD (P < 0.001, P = 0.05), and the ratio of FoxP3 mRNA to the number of FoxP3-positive cells was decreased in potential CD when compared with controls (P = 0.007). The ratio of IFN-gamma to FoxP3-specific mRNA was increased in active and potential CD (P = 0.001 and P = 0.002). Patients with T1D had no changes in regulatory T cell markers, but showed increased expression of IL-18 mRNA. The impaired up-regulation of FoxP3 transcripts despite the infiltration of FoxP3-positive cells in potential CD may contribute to the persistence of inflammation. The increased ratio of IFN-gamma to FoxP3 mRNA in active and potential CD suggests an imbalance between regulatory and effector mechanisms. The increased intestinal expression of IL-18 mRNA in patients with T1D adds evidence in favour of the hypothesis that T1D is associated with derangements in the gut immune system.
Automatic detection of endoscope in intraoperative CT image: Application to AR guidance in laparoscopic surgery (2014)

Augmented reality in minimally invasive surgery has rapidly grown over the recent years. Commonly, the surgical scene is augmented through the endoscopic view with a 3D model extracted from a preoperative acquisition. Nevertheless, due to the probable pneumoperitoneum and the patient displacement, the organs of interest often drastically change in shape and place. Methods exist that attempt to recover or simulate the distortion between the pre- and intraoperative states, but require yet another intraoperative 3D acquisition in order to reach the required accuracy. In this article, we propose a new approach to automatically registering the reconstruction from an intraoperative CT acquisition with the static endoscopic view, by locating the endoscope tip consciously intruding in the model. This method does not require any external tracking apparatus nor analysis of the endoscopic image. In the last section, we also present some early quantitative and qualitative results proving the feasibility and clinical potential of our approach.
Highly Enantioselective Pd‐Catalyzed Allylic Alkylations of Acyclic Ketones (2005)

Pocket the difference: Highly enantioselective allylic alkylation of simple acyclic ketones is carried out by using a Pd catalyst with a “chiral pocket” ligand 1 (see scheme). The addition of a Lewis acid such as AgBr and the selection of one enolate form over another dramatically affect the enantioselectivity of the reaction. Supporting information for this article is available on the WWW under http://www.wiley-vch.de/contents/jc_2002/2005/z502020_s.pdf or from the author. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
Gadolinium-Based GaN for Neutron Detection with Gamma Discrimination (2016)

Abstract : The objective of this project is to develop and understanding of the fundamental material electronics response from a gadolinium-based GaN semiconductor device exposed to neutron radiation. The GaN Schottky diode radiation sensor has been successfully fabricated and shown alpha and beta response. Neutron spectrum using 6Li as a converter was successfully obtained. To understand devices' electronic properties, the detector has been characterized by current-voltage, capacitance-voltage, charge collection efficiency, alpha spectroscopy, etc. In addition, numerical simulations using TCAD software have been performed to reveal the charge migration and to understand the fundamental material and device properties at picosecond scale. The proposed twin-detector design for gamma-ray discrimination was validated both theoretically and experimentally.