gebhart/patrepeval huggingface dataset:
Prouroguanylin and proguanylin: purification from colon, structure, and modulation of bioactivity by proteases. (1996)

Uroguanylin and guanylin are peptides isolated from urine and intestinal mucosa, which regulate cyclic GMP production in enterocytes by activating an apical membrane, receptor-guanylate cyclase. This study extended our previous findings, which showed that colonic mucosa of opossums contained uroguanylin and guanylin peptides, by purifying prouroguanylin and proguanylin from this tissue. Prouroguanylin and proguanylin coeluted from Sephadex G-75 gelfiltration columns with a similar molecular size between 6 and 12 kDa. Mass spectrometry indicated that proguanylin (approximately 8.7 kDa) had a 10% lower molecular mass than prouroguanylin (approximately 9.7 kDa). Isoelectric focusing separated prouroguanylin (pI approximately 4.5) from proguanylin (pI approximately 7.5). N-terminal sequence analysis of reverse phrase-HPLC purified prohormones revealed 13 amino acids in opossum proguanylin that shared 77-85% identity with human and rat proguanylin, but only 23% identity with opossum prouroguanylin. The N-terminal 19 residues obtained for opossum prouroguanylin shared 32-42% identity with rat and human proguanylin. Prouroguanylin and proguanylin were both inactive and required pretreatment with proteases to elicit cyclic GMP responses in T84 cells. V8 protease treatment of proguanylin liberated a bioactive, 16-amino acid form of guanylin. Chymotrypsin treatment activated prouroguanylin, but inactivated the bioactive peptide domain within proguanylin. In summary, colonic mucosa contains the bioactive peptide and inactive prohormone forms of uroguanylin and guanylin. Thus, after proteolytic processing of prouroguanylin and proguanylin, bioactive uroguanylin and guanylin could both function to regulate guanylate cyclase activity by autocrine and/or paracrine actions on enterocytes. Also, these peptide hormones are implicated in an intestinal-renal axis for the endocrine regulation of salt and water homeostasis.
Intranasal acellular pertussis vaccine provides mucosal immunity and protects mice from Bordetella pertussis (2019)

Current acellular pertussis vaccines fall short of optimal protection against the human respiratory pathogen <i>Bordetella pertussis</i> resulting in increased incidence of a previously controlled vaccine- preventable disease. Natural infection is known to induce a protective mucosal immunity. Therefore, in this study, we aimed to use acellular pertussis vaccines to recapitulate these mucosal immune responses. We utilized a murine immunization and challenge model to characterize the efficacy of intranasal immunization (IN) with DTaP vaccine or DTaP vaccine supplemented with curdlan, a known Th1/Th17 promoting adjuvant. Protection from IN delivered DTaP was compared to protection mediated by intraperitoneal injection of DTaP and whole-cell pertussis vaccines. We tracked fluorescently labeled DTaP after immunization and detected that DTaP localized preferentially in the lungs while DTaP with curdlan was predominantly in the nasal turbinates. IN immunization with DTaP, with or without curdlan adjuvant, resulted in anti-<i>B. pertussis</i> and anti-pertussis toxin IgG titers at the same level as intraperitoneally administered DTaP. IN immunization was able to protect against <i>B. pertussis</i> challenge and we observed decreased pulmonary pro-inflammatory cytokines, neutrophil infiltrates in the lung, and bacterial burden in the upper and lower respiratory tract at day 3 post challenge. Furthermore, IN immunization with DTaP triggered mucosal immune responses such as production of <i>B. pertussis</i>-specific IgA, and increased IL-17A. Together, the induction of a mucosal immune response and humoral antibody-mediated protection associated with an IN administered DTaP and curdlan adjuvant warrant further exploration as a pertussis vaccine candidate formulation.
Origins of Cell Selectivity of Cationic Steroid Antibiotics (2004)

A key factor in the potential clinical utility of membrane-active antibiotics is their cell selectivity (i.e., prokaryote over eukaryote). Cationic steroid antibiotics were developed to mimic the lipid A binding character of polymyxin B and are shown to bind lipid A derivatives with affinity greater than that of polymyxin B. The outer membranes of Gram-negative bacteria are comprised primarily of lipid A, and a fluorophore-appended cationic steroid antibiotic displays very high selectivity for Gram-negative bacterial membranes over Gram-positive bacteria and eukaryotic cell membranes. This cell selectivity of cationic steroid antibiotics may be due, in part, to the affinity of these compounds for lipid A.
New Scheduling Architecture for IEEE 802.16 Wireless Metropolitan Area Network (2007)

IEEE 802.16 standard defines the specifications for emerging WiMAX networks. It did not however define the scheduling algorithms that determine the uplink and downlink bandwidth allocation. This paper proposes a preemptive deficit fair priority queue (PDFPQ) scheduling architecture for QoS management for the IEEE 802.16 standard. The proposed scheduling architecture is an extension of the DFPQ scheduling technique found in the literature. It enhances the QoS requirements of real time polling service (rtPS) flow class, and improves its delay and throughput. Compared to DFPQ, preliminary results show that a significant rtPS delay reduction and throughput increase can be realized with our new scheduling technique.
Chalcones XIII : Potential Germicides derived from Substituted Acetophenones (1975)

(Department of Chemistry, Harcourt Butler Technological Instt. Kanpur-2) <em>Manuscript Received 30 December 1971 ; received 19 July 1974: accepted 26 March 1975</em> Chalcones XIII : Potential Germicides derived from Substituted Acetophenones.
Antibody Response, Recurrence Patterns and Subsequent Herpes Simplex Virus Type 2 (HSV-2) Re-infection Following Initial HSV-2 Infection of Guinea-pigs: Effects of Acyclovir (1986)

The production of antibody to specific herpes simplex virus type 2 (HSV-2) polypeptides, the recurrence patterns and the susceptibility to re-infection were studied in the guinea-pig model of genital HSV-2 infection. Further, we defined the effects of acyclovir (ACV) therapy on these parameters of infection. Treatment with ACV reduced the clinical severity of the initial disease but did not affect vaginal viral shedding. Production of neutralizing antibody as well as antibody to the nucleocapsid protein, and glycoproteins B, D and G were all delayed in ACV recipients. ACV treatment of initial infection did not significantly alter the pattern of subsequent recurrence although by several criteria treated animals tended towards decreased recurrences. Re-inoculation with a second strain of HSV-2 resulted in a local cervicovaginal infection but, except for one ACV-treated animal, neural tissue was protected from re-infection.
Structure and chemical composition of fluorinated SiO2 films deposited using SiF4/O2 plasmas (1997)

Attenuated total reflection Fourier transform infrared spectroscopy and spectroscopic ellipsometry were employed for chemical and structural analysis of fluorinated SiO2 deposited in SiF4 and O2 plasmas. Isotopic substitution of 16O2 with 18O2 in the feed gas mixture was used to determine whether F is bonded to Si or O atoms in the film. Isotopic substitution experiments revealed that infrared active SiO–F stretching mode in SiO2 matrix appears at 1372 cm-1 but only when the SiF4-to-O2 ratio of the feed gas mixture is reduced below 0.1. The SiOF species in fluorinated SiO2 result from insertion of O into SiF bonds, which have been already incorporated into the film. Deposition experiments using 16O2 and 18O2 also helped identify silicon mono- and di-fluorides (O3SiF and O2SiF2), which were most abundant in fluorinated SiO2. The stretching mode of O3Si–F appears at 950 cm-1, whereas the antisymmetric and symmetric stretching modes of O2Si–F2 appear at 990 cm-1 and 920 cm-1, respectively. The concentration of silicon fluorides increase monotonically with increasing SiF4-to-O2 ratio. The increase in silicon fluoride concentration causes the Si–O–Si phonon peaks to blueshift and narrow by relaxing the Si–O–Si bond angle and by decreasing the film density. Narrowing of the SiO2 phonon at 1080 cm-1 is due to SiOSi bond angle relaxation and not due to a more homogenous and ordered fluorinated SiO2 structure than unfluorinated SiO2 as suggested in previous reports. This bond angle relaxation and density reduction are accompanied by a decrease in the refractive index. Although the low refractive index signals low dielectric constant, the chemical susceptibility of SiF to O2 and H2O limits the maximum allowable silicon fluoride concentration in SiOF films to approximately 11 at. %.
Mechanisms of Invasion in Head and Neck Cancer (2015)

Histologic features of HNSCC tumors can help predict prognosis and influence clinical treatment decisions. Cell surface receptors, signaling pathways, proteases, invadopodia function, epithelial-mesenchymal transition, microRNAs, and tumor microenvironment are all involved in the regulation of the invasive behavior of HNSCC cells. Identifying effective HNSCC invasion inhibitors has the potential to improve outcomes for patients by reducing the rate of spread and increasing responsiveness to chemoradiation.
Performance analysis of a wing with multiple winglets (2001)

This effort examined the potential of multi-winglets for the reduction of induced drag without increasing the span of aircraft wings. Wind tunnel models were constructed using a NACA 0012 airfoil section for the untwisted, rectangular wing and flat plates for the winglets. Testing of the configurations occurred over a range of Reynolds numbers from 161,000 to 300,000. Wind tunnel balances provided lift and drag measurements, and laser flow visualization obtained wingtip vortex information. The Cobalt60 unstructured solver generated flow simulations of the experimental configuration via solution of the Euler equations of motion. The results show that certain multi-winglet configurations reduced the wing induced drag and improved L/D by 15-30% compared with the baseline 0012 wing. A substantial increase in lift curve slope occurs with dihedral spread of winglets set at zero incidence relative to the wing. Dihedral spread also distributes the tip vortex. These observations supplement previous results on drag reduction due to lift reorientation with twisted winglets set at negative incidence.
A Mutated Soluble Neuropilin-2 B Domain Antagonizes Vascular Endothelial Growth Factor Bioactivity and Inhibits Tumor Progression (2010)

Neuropilins (NRP1 and NRP2) are coreceptors for vascular endothelial growth factor (VEGF) and mediate angiogenesis and tumor progression. VEGF binds to the NRP1 and NRP2 B domains. Previously, it was shown that mutagenesis of the soluble NRP2 B domain (MutB-NRP2) increased affinity to VEGF by 8-fold. Here, we show that MutB-NRP2 inhibited (125)I-VEGF binding to NRP1, NRP2, and VEGFR-2. It antagonized VEGF-induced VEGFR-2/NRP2 complex formation and inhibited VEGF-induced activation of AKT, a mediator of cell survival, without affecting activation of VEGFR-2. In three-dimensional embryoid bodies, a model of VEGF-induced angiogenesis, MutB-NRP2 inhibited VEGF-induced sprouting. When overexpressed in human melanoma cells, MutB-NRP2 inhibited tumor growth compared with control tumors. Avastin (bevacizumab), a monoclonal antibody to VEGF, inhibited VEGF interactions with VEGFR-2, but not with NRPs. The combination of MutB-NRP2 and Avastin resulted in an enhanced inhibition of human melanoma tumor growth compared with MutB-NRP2 treatment only or Avastin treatment only. In conclusion, these results indicate that MutB-NRP2 is a novel antagonist of VEGF bioactivity and tumor progression.
Magnetic Damping in Ferromagnetic Thin Films (2006)

We determined the Gilbert damping constants of Fe–Co–Ni and Co–Fe–B alloys with various compositions and half-metallic Co2MnAl Heusler alloy films prepared by magnetron sputtering. The ferromagnetic resonance (FMR) technique was used to determine the damping constants of the prepared films. The out-of-plane angular dependences of the resonance field (HR) and line width (ΔHpp) of FMR spectra were measured and fitted using the Landau–Lifshitz–Gilbert (LLG) equation. The experimental results fitted well, considering the inhomogeneities of the films in the fitting. The damping constants of the metallic films were much larger than those of bulk ferrimagnetic insulators and were roughly proportional to (g-2)2, where g is the Lande g factor. We discuss the origin of magnetic damping, considering spin–orbit and s–d interactions.
The type III TGF-β receptor suppresses breast cancer progression (2006)

The TGF-beta signaling pathway has a complex role in regulating mammary carcinogenesis. Here we demonstrate that the type III TGF-beta receptor (TbetaRIII, or betaglycan), a ubiquitously expressed TGF-beta coreceptor, regulated breast cancer progression and metastasis. Most human breast cancers lost TbetaRIII expression, with loss of heterozygosity of the TGFBR3 gene locus correlating with decreased TbetaRIII expression. TbetaRIII expression decreased during breast cancer progression, and low TbetaRIII levels predicted decreased recurrence-free survival in breast cancer patients. Restoring TbetaRIII expression in breast cancer cells dramatically inhibited tumor invasiveness in vitro and tumor invasion, angiogenesis, and metastasis in vivo. TbetaRIII appeared to inhibit tumor invasion by undergoing ectodomain shedding and producing soluble TbetaRIII, which binds and sequesters TGF-beta to decrease TGF-beta signaling and reduce breast cancer cell invasion and tumor-induced angiogenesis. Our results indicate that loss of TbetaRIII through allelic imbalance is a frequent genetic event during human breast cancer development that increases metastatic potential.
Space Systems Working Group (2008)

INSIGHT is the magazine of the International Council on Systems Engineering. It is published four times per year and features informative articles dedicated to advancing the state of practice in systems engineering and to close the gap with the state of the art. INSIGHT delivers practical information on current hot topics, implementations, and best practices, written in applications-driven style.
Same-Day CD4 Testing to Improve Uptake of HIV Care and Treatment in South Africa: Point-of-Care Is Not Enough (2013)

Background. We evaluated whether a pilot program providing point-of-care (POC), but not rapid, CD4 testing (BD FACSCount) immediately after testing HIV-positive improved retention in care. Methods. We conducted a retrospective record review at the Themba Lethu Clinic in Johannesburg, South Africa. We compared all walk-in patients testing HIV-positive during February, July 2010 (pilot POC period) to patients testing positive during January 2008-February 2009 (baseline period). The outcome for those with a ≤250 cells/mm(3) when testing HIV-positive was initiating ART <16 weeks after HIV testing. Results. 771 patients had CD4 results from the day of HIV testing (421 pilots, 350 baselines). ART initiation within 16 weeks was 49% in the pilot period and 46% in the baseline period. While all 421 patients during the pilot period should have been offered the POC test, patient records indicate that only 73% of them were actually offered it, and among these patients only 63% accepted the offer. Conclusions. Offering CD4 testing using a point-of-care, but not rapid, technology and without other health system changes had minor impacts on the uptake of HIV care and treatment. Point-of-care technologies alone may not be enough to improve linkage to care and treatment after HIV testing.
Synthesis of SnS Thin Films by Atomic Layer Deposition at Low Temperatures (2017)

Two-dimensional (2-D) metal chalcogenides have received great attention because of their unique properties, which are different from bulk materials. A challenge in implementing 2-D metal chalcogenides in emerging devices is to prepare a well-crystallized layer over large areas at temperatures compatible with current fabrication processes. Tin monosulfide, a p-type layered semiconductor with a high hole mobility, is a promising candidate for realizing large-area growth at low temperatures because of its low melting point. However, tin sulfides exist in two notable crystalline phases, SnS and SnS2. Therefore, it is imperative to control the oxidation state of Sn to achieve a pure SnS film. Here, the synthesis of SnS thin films by atomic-layer-deposition (ALD) is demonstrated using bis(1-dimethylamino-2-methyl-2-propoxy)tin(II) and H2S as Sn and S sources, respectively, over a wide temperature window (90–240 °C). Impurities such as carbon, oxygen, and nitrogen were negligibly detected. The morphological evolution of plate-like orthorhombic SnS grains was observed above 210 °C. Moreover, properties of thin film transistors and gas sensors using SnS films as the active layers were investigated. The SnS ALD process would provide promising opportunities to exploit the intriguing properties of the 2-D metal chalcogenides for realizing emerging electronic devices.
Early hypercytokinemia is associated with interferon-induced transmembrane protein-3 dysfunction and predictive of fatal H7N9 infection (2013)

A unique avian-origin A/H7N9 influenza virus has so far caused 134 cases with 44 deaths. Probing the host factors contributing to disease severity, we found that lower levels of plasma inflammatory cytokines on hospital admission correlated with faster recovery in 18 patients with A/H7N9 influenza virus, whereas high concentrations of (in particular) IL-6, IL-8, and macrophage inflammatory protein-1β were predictive of a less favorable or fatal outcome. Analysis of bronchoalveolar lavage samples showed up to 1,000-fold greater cytokine/chemokine levels relative to plasma. Furthermore, patients with the rs12252-C/C IFN-induced transmembrane protein-3 (IFITM3) genotype had more rapid disease progression and were less likely to survive. Compared with patients with the rs12252-T/T or rs12252-T/C genotype of IFITM3, patients with the C/C genotype had a shorter time from disease onset to the time point when they sought medical aid (hospital admission or antiviral therapy) and a shorter interval to development of the acute respiratory distress syndrome stage (reflected by shorter intervals between clinical onset and methylprednisolone treatments and higher rates of mechanical ventilator use), as well as experiencing elevated/prolonged lung virus titers and cytokine production and higher mortality. The present analysis provides reported data on the H7N9 influenza-induced "cytokine storm" at the site of infection in humans and identifies the rs12252-C genotype that compromises IFITM3 function as a primary genetic correlate of severe H7N9 pneumonia. Together with rs12252 sequencing, early monitoring of plasma cytokines is thus of prognostic value for the treatment and management of severe influenza pneumonia.
Apoptosis of colorectal adenocarcinoma induced by 5-FU and/or IFN-gamma through caspase 3 and caspase 8. (1999)

The cytotoxic effect of 5-FU has been shown by the induction of apoptosis in cancer cells, and reported to be enhanced by IFN-gamma. We examined the role of caspases on the apoptosis induction of 5-FU and IFN-gamma using a colorectal adenocarcinoma cell line. The activities of caspase 3 and caspase 8 increased when apoptosis was induced by 5-FU and/or IFN-gamma. Moreover, all apoptotic cells showed high caspase 3 activity in these conditions. Although the inhibitors of caspase 3 and caspase 8 inhibit apoptosis, anti-Fas ligand antibody does not affect the apoptosis induced by 5-FU. Thus, caspase 3 and caspase 8 play crucial roles in apoptosis induced by 5-FU and/or IFN-gamma, regardless of the Fas-Fas ligand system.
[No Title] (1996)

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The National Oncologic PET Registry (NOPR): Design and Analysis Plan (2007)

The NOPR will allow an accurate assessment of the impact of PET on intended patient management across a wide spectrum of cancer indications.
Aurora Kinases as Targets in Drug-Resistant Neuroblastoma Cells (2014)

Aurora kinase inhibitors displayed activity in pre-clinical neuroblastoma models. Here, we studied the effects of the pan-aurora kinase inhibitor tozasertib (VX680, MK-0457) and the aurora kinase inhibitor alisertib (MLN8237) that shows some specificity for aurora kinase A over aurora kinase B in a panel of neuroblastoma cell lines with acquired drug resistance. Both compounds displayed anti-neuroblastoma activity in the nanomolar range. The anti-neuroblastoma mechanism included inhibition of aurora kinase signalling as indicated by decreased phosphorylation of the aurora kinase substrate histone H3, cell cycle inhibition in G2/M phase, and induction of apoptosis. The activity of alisertib but not of tozasertib was affected by ABCB1 expression. Aurora kinase inhibitors induced a p53 response and their activity was enhanced in combination with the MDM2 inhibitor and p53 activator nutlin-3 in p53 wild-type cells. In conclusion, aurora kinases are potential drug targets in therapy-refractory neuroblastoma, in particular for the vast majority of p53 wild-type cases.
Free Glutamine and Glutamic Acid Increase in Human Milk Through a Three-Month Lactation Period (2000)

Breast-fed infants are supplied with progressively increasing amounts of glutamine and glutamic acid throughout lactation. The increasing intake of glutamic acid and glutamine could benefit breast-fed infants with molecules that are likely to protect the enteral mucosa and act as neurotransmitters and as a source of nitrogen.
Good Workers Are Hard to Find (1998)

Elevated concentrations of CSF bilirubin can be detected following a low-volume SAH, and the production of bilirubin occurred over a predictable time course. Twelve hours after hemorrhage, an elevated CSF bilirubin concentration was an indicator of hemolysis occurring in the subarachnoid spaces. The presence of bilirubin in CSF is a potential marker for differentiating SAHs from traumatic lumbar punctures in humans.
Performance of link level protocols over satellite (2003)

An analysis of the performance of low- and high-speed packet switch data over satellite channels is presented. Three link-level protocols, restart after error detection, high-level data link control with selective reject, and continuous transmission protocol are analyzed over satellite channels at speeds up to 1.544 Mb/s. The results of this analysis lead to the system specification requirements for the satellite business system packet data network and SNA architecture over satellite links. The performance measure throughput is calculated for different bit error rates, channel capacities, satellite hops, channel utilizations, and packet sizes. The sensitivity of throughput to these parameters is addressed, and results are presented in various graphs and tables.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>