gebhart/patrepeval huggingface dataset:
Screaming Channels (2018)

This paper presents a new side channel that affects mixed-signal chips used in widespread wireless communication protocols, such as Bluetooth and WiFi. This increasingly common type of chip includes the radio transceiver along with digital logic on the same integrated circuit. In such systems, the radio transmitter may unintentionally broadcast sensitive information from hardware cryptographic components or software executing on the CPU. The well-known electromagnetic (EM) leakage from digital logic is inadvertently mixed with the radio carrier, which is amplified and then transmitted by the antenna. We call the resulting leak screaming channels. Attacks exploiting such a side channel may succeed over a much longer distance than attacks exploiting usual EM side channels. The root of the problem is that mixed-signal chips include both digital circuits and analog circuits on the same silicon die in close physical proximity. While processing data, the digital circuits on these chips generate noise, which can be picked up by noise-sensitive analog radio components, ultimately leading to leakage of sensitive information. We investigate the physical reasons behind the channel, we measure it on several popular devices from different vendors (including Nordic Semiconductor nRF52832, and Qualcomm Atheros AR9271), and we demonstrate a complete key recovery attack against the nRF52832 chip. In particular, we retrieve the full key from the AES-128 implementation in tinyAES at a distance of 10 m using template attacks. Additionally, we recover the key used by the AES-128 implementation in mbedTLS at a distance of 1 m with a correlation attack. Screaming channel attacks change the threat models of devices with mixed-signal chips, as those devices are now vulnerable from a distance. More specifically, we argue that protections against side channels (such as masking or hiding) need to be used on this class of devices. Finally, chips implementing other widespread protocols (e.g., 4G/LTE, RFID) need to be inspected to determine whether they are vulnerable to screaming channel attacks.
Effects of sympathetic denervation on liver fibroblasts: prevention by adenosine (1990)

1. The effect of chemical denervation with 6-hydroxydopamine (6-OHDA) upon portal tract fibroblasts of dogs and rabbits was studied. 2. Denervation led to a significant increase in the density of portal tract fibroblasts both in the dog and in the rabbit. 3. Mast cells, present in the dog but not in the rabbit liver, were also significantly increased by denervation. 4. Noradrenaline depletion induced by reserpine did not increase the density of fibroblasts in the liver portal spaces of the dog. Mast cell density, however, was actually decreased when compared with control. 5. Continuous i.v. infusions of adenosine (10 micrograms kg-1h-1) to dogs totally prevented the effects of 6-OHDA-induced denervation upon fibroblast and mast cell densities in the portal space connective tissue. 6. It is concluded that the sympathetic nervous system is exerting a repressive effect on liver fibroblasts, as was found to occur in various other mammalian tissues. Mast cells, which are known to be activated in various pathological processes of fibrosis, appear to share with fibroblasts a modulating effect from the sympathetic nervous system. 7. The results strongly support the hypothesis of adenosine being the sympathetic trophic factor involved in the control of fibroblasts in the connective tissue of dog liver. A similar role for adenosine had previously been found in the dog saphenous vein.
Internet Fraud (2003)

Criminals have adopted the Internet because of its increased efficiency in facilitating the business processes of the criminal enterprise. Their gains in productivity are among the great success stories of the Internet, and many in corporations only wish they could achieve the same level of efficiency. One of the longest running frauds on the Internet, or anywhere else, is the religious or political charity that doesn’t exist. There is nothing new about charities as fronts for frauds, criminals, or even more recently terrorists. Charities are seemingly benevolent. Honest hard working people who want to do good for others and share the fruits of their labours use charities as a gateway to help others.
Spectral phase measurements for broad Raman sidebands by using spectral interferometry (2008)

We report a method of spectral phase measurement for a femtosecond pulse train composed of a discrete Raman spectrum. The method is based on an idea of spectral interference. Making use of a small portion of two Raman pump laser radiations, we produce two sum-frequency spectra that spectrally interfere with each other. Based on this interfering sum-frequency spectra, we successfully derive the spectral phase and reconstruct the temporal profile. The reliability of this method is also confirmed by measuring the spectral phase changes caused by intentionally inserted silica plates of various thicknesses and comparing them to theoretical predictions.
An invasive pentatomid pest in Argentina: neotropical brown stink bug, Euschistus heros (F.) (Hemiptera: Pentatomidae). (2015)

This is the first record on the invasion of the Neotropical brown stink bug, Euschistus heros (F.) in Paraná County (latitude 31º 51' 9.6" S, longitude 60º 32' 11.2" W), Entre Ríos province, Argentina. Five adults were intercepted in 2009/2010, one in crop residues and four on soybean fields. The expanding range in the distribution of E. heros in the Southern Hemisphere is believed to be due to the increased commercial trade among countries, increase in the area cultivated with soybean, and the adoption of no-tillage cropping systems.
Widespread brain tau and its association with ageing, Braak stage and Alzheimer’s dementia (2017)

See Herholz (doi:10.1093/brain/awx340) for a scientific commentary on this article.Autopsy data have proposed that a topographical pattern of tauopathy occurs in the brain with the development of dementia due to Alzheimer's disease. We evaluated the findings of tau-PET to better understand neurofibrillary tangle development as it is seen in cognitively unimpaired and impaired individuals. The evolution of Alzheimer's disease tauopathy in cognitively unimpaired individuals needs to be examined to better understand disease pathogenesis. Tau-PET was performed in 86 cognitively impaired individuals who all had abnormal amyloid levels and 601 cognitively unimpaired individuals. Tau-PET findings were assessed for relationships with clinical diagnosis, age, and regional uptake patterns relative to Braak stage. Regional and voxel-wise analyses were performed. Topographical findings from tau-PET were characterized using hierarchical clustering and clinical characteristic-based subcategorization. In older cognitively unimpaired individuals (≥50 years), widespread, age-related elevated tau signal was seen among those with normal or abnormal amyloid status as compared to younger cognitively unimpaired individuals (30-49 years). More frequent regional tau signal elevation throughout the brain was seen in cognitively unimpaired individuals with abnormal versus normal amyloid. Elevated tau signal was seen in regions that are considered high Braak Stage in cognitively unimpaired and cognitively impaired individuals. Hierarchical clustering and clinical characteristic-based categorizations both showed different patterns of tau signal between groups such as greater tau signal in frontal regions in younger onset Alzheimer's disease dementia participants (most of whom had a dysexecutive clinical presentation). Tau-PET signal increases modestly with age throughout the brain in cognitively unimpaired individuals and elevated tau is seen more often when amyloid brain accumulation is present. Tau signal patterns in cognitively unimpaired correspond to early Braak stage but also suggest tangle involvement in extra-medial temporal and extra-temporal regions that are considered more advanced in the Braak scheme even when amyloid negative. Our findings also suggest the possibility of widespread development of early tangle pathology rather than a pattern defined exclusively by adjacent, region-to-region spread, prior to onset of clinical symptoms. Distinct patterns of neurofibrillary tangle deposition in younger-onset Alzheimer's disease dementia versus older-onset Alzheimer's disease dementia provide evidence for variability in regional tangle deposition patterns and demonstrate that different disease phenotypes have different patterns of tauopathy. Pathological correlation with imaging is needed to assess the implications of these observations.
Bloom Filters Based on the B-tree (2009)

The Bloom filter has become attractive as one of the methods of looking up data in the distributed system. Since two or more keywords can be used in the method based on the Bloom filter, it is more flexible than the distributed hash table (DHT). Especially, the key aspect of the structured Bloom filter is that the number of query forwarding is fixed. In the research of the past, the ring of the Bloom filter which is like the Chord structure is proposed. However, the node in the ring must maintain many filters corresponding to the number of nodes. In this research, the Bloom filter based on the tree structure is proposed. The filter information managed in the node is reduced, and the size of information in this research is compared to the existing research.
A New 1,4-Diazepine from South China Sea Marine Sponge Callyspongia Species (2010)

A new 1,4-diazepine, callysponine (1), was isolated from a South China Sea Callyspongia sp. marine sponge, together with four known proline-based diketopiperazines: cyclo-(S-Pro-R-Leu) (2), cyclo-(S-Pro-R-Val) (3), cyclo-(S-Pro-R-Ala) (4), andcyclo-(S-Pro-R-Tyr) (5). The new structure was determined on the basis of NMR and MS analysis, and the absolute stereochemistry was defined by NOESY spectroscopy and optical rotation. The structures of the known compounds were identified by comparison of their spectroscopic data with those reported in the literature. Callysponine (1) did not inhibit the growth of HepG2 (hepatoma carcinoma cell), A549 (lung carcinoma cell), and HeLa (cervical cancer cell) cell lines.
Defensin promoters as potential tools for engineering disease resistance in cereal grains (2009)

Engineering of plant protection in cereals requires well characterized tissue-specific and wounding/pathogen-inducible promoters for targeted expression of pathogen responsive and resistance genes. We describe the isolation of seven wheat and rice defensin genes expressed in early developing grain and during grain germination, two developmental stages that are particularly vulnerable to pathogens and insects. Comparison of three-dimensional (3D) models of these rice and wheat PRPI defensins indicated variations in spatial architectures that could reflect their functional diversities. Wheat and rice were stably transformed with promoter-GUS fusion constructs and the spatial and temporal activities of four promoters were studied using whole-mount and histological assays. PRPI promoters were active before and at anthesis in both transgenic wheat and rice with activity mainly in the ovary. In rice, GUS activity was also observed in vascular tissue of the lemma, palea and anthers. After fertilization, GUS was strongly expressed in the outer cell layers of the pericarp and in the main vascular bundle of the grain. During, and a short time after, seed germination, wheat promoters were active in transgenic rice embryos, roots and/or coleoptiles. All wheat and rice promoters were strongly induced by wounding in leaf, stem and grain of transgenic rice plants. These results suggest that PRPI promoters will be useful for specific targeting and accumulation of proteins conferring resistance to pathogens in vulnerable tissues of developing and germinating grain.
Thermonuclear neutron emission from a sheared-flow stabilized Z-pinch (2021)

The fusion Z-pinch experiment (FuZE) is a sheared-flow stabilized Z-pinch designed to study the effects of flow stabilization on deuterium plasmas with densities and temperatures high enough to drive nuclear fusion reactions. Results from FuZE show high pinch currents and neutron emission durations thousands of times longer than instability growth times. While these results are consistent with thermonuclear neutron emission, energetically resolved neutron measurements are a stronger constraint on the origin of the fusion production. This stems from the strong anisotropy in energy created in beam-target fusion, compared to the relatively isotropic emission in thermonuclear fusion. In dense Z-pinch plasmas, a potential and undesirable cause of beam-target fusion reactions is the presence of fast-growing, “sausage” instabilities. This work introduces a new method for characterizing beam instabilities by recording individual neutron interactions in plastic scintillator detectors positioned at two different angles around the device chamber. Histograms of the pulse-integral spectra from the two locations are compared using detailed Monte Carlo simulations. These models infer the deuteron beam energy based on differences in the measured neutron spectra at the two angles, thereby discriminating beam-target from thermonuclear production. An analysis of neutron emission profiles from FuZE precludes the presence of deuteron beams with energies greater than 4.65 keV with a statistical uncertainty of 4.15 keV and a systematic uncertainty of 0.53 keV. This analysis demonstrates that axial, beam-target fusion reactions are not the dominant source of neutron emission from FuZE. These data are promising for scaling FuZE up to fusion reactor conditions.
Restimulation: Candidate Selection Methodologies and Treatment Optimization (2006)

Abstract Restimulation of existing wells represents a vast underexploited resource. A successful refracturing treatment is one that creates a fracture having higher fracture conductivity and/or penetrating an area of higher pore pressure than the previous fracture. Refracturing requirements are different in highly permeable formations (high fracture conductivity) as compared to low permeable ones (moderate fracture conductivity). Understanding these basic differences is essential to a successful restimulation. In the past, candidate selection methodology has focused on underperforming wells. This simplistic approach has yielded disappointing results and has led to a common misconception that restimulations "don't work." Production statistics of a well alone may not offer an effective restimulation candidate selection methodology. Other parameters such as high BHP (remaining reservoir energy), recoverable reserves, ϕ-h1 and favorable response to original fracture jobs (IP) could play an equally important role, if not greater, in determining the success of restimulation. In fact, studies have shown that selecting poor or underperforming wells for restimulation is likely to result in worse outcomes than random selection of workover candidates. Studies performed to date have concluded that no selection criteria can be universally applied to every situation; rather that the selection methodology for workover candidates must be customized to fit particular situations. This paper explores the common traits shared by fields likely to have underexploited restimulation potential and suggests methodologies that should be applied to various field types The case histories illustrated in this paper will highlight the various treatment parameters optimized for successful restimulation. The conclusions of this paper are based on our work in selecting restimulation candidates as well as published results of other operators. Application of the correct candidate selection methodology to a particular field type will inevitably lead to a higher success rate of restimulation walkovers and the capture of an underexploited resource.
Proteomic analysis of salt stress‐responsive proteins in rice root (2005)

Salt stress is one of the major abiotic stresses in agriculture worldwide. We report here a systematic proteomic approach to investigate the salt stress-responsive proteins in rice (Oryza sativa L. cv. Nipponbare). Three-week-old seedlings were treated with 150 mM NaCl for 24, 48 and 72 h. Total proteins of roots were extracted and separated by two-dimensional gel electrophoresis. More than 1100 protein spots were reproducibly detected, including 34 that were up-regulated and 20 down-regulated. Mass spectrometry analysis and database searching helped us to identify 12 spots representing 10 different proteins. Three spots were identified as the same protein, enolase. While four of them were previously confirmed as salt stress-responsive proteins, six are novel ones, i.e. UDP-glucose pyrophosphorylase, cytochrome c oxidase subunit 6b-1, glutamine synthetase root isozyme, putative nascent polypeptide associated complex alpha chain, putative splicing factor-like protein and putative actin-binding protein. These proteins are involved in regulation of carbohydrate, nitrogen and energy metabolism, reactive oxygen species scavenging, mRNA and protein processing, and cytoskeleton stability. This study gives new insights into salt stress response in rice roots and demonstrates the power of the proteomic approach in plant biology studies.
SGC Tests for Influence of Material Composition on Compaction Characteristic of Asphalt Mixtures (2013)

Compaction characteristic of the surface layer asphalt mixture (13-type gradation mixture) was studied using Superpave gyratory compactor (SGC) simulative compaction tests. Based on analysis of densification curve of gyratory compaction, influence rules of the contents of mineral aggregates of all sizes and asphalt on compaction characteristic of asphalt mixtures were obtained. SGC Tests show that, for the mixture with a bigger content of asphalt, its density increases faster, that there is an optimal amount of fine aggregates for optimal compaction and that an appropriate amount of mineral powder will improve workability of mixtures, but overmuch mineral powder will make mixtures dry and hard. Conclusions based on SGC tests can provide basis for how to adjust material composition for improving compaction performance of asphalt mixtures, and for the designed asphalt mixture, its compaction performance can be predicted through these conclusions, which also contributes to the choice of compaction schemes.
Oscillatory Interlayer Exchange Coupling with the Cu Cap Layer Thickness in Co/Cu/Co/Cu(100) (1995)

An oscillatory dependence of the strength of the antiferromagnetic exchange coupling on the cap layer thickness has been observed in an epitaxial Co/Cu/Co/Cu(100) sample with a wedge-shaped Cu interlayer and cap layer. The result is consistent with a single long oscillation period stemming from the extremal spanning vector of the Cu (cap layer) Fermi surface along the $\ensuremath{\Gamma}X$ line. The absence of a short period oscillation is understood from the confinement of the corresponding electron states to the spacer. A quantitative comparison with Bruno's model is made.
Search and retrieval of multi-modal data associated with image-parts (2015)

We present a novel framework for querying multi-modal data from a heterogeneous database containing images, textual tags, and GPS coordinates. We construct a bi-layer graph structure using localized image-parts and associated GPS locations and textual tags from the database. The first layer graphs capture similar data points from a single modality using a spectral clustering algorithm. The second layer of our multi-modal network allows one to integrate the relationships between clusters of different modalities. The proposed network model enables us to use flexible multi-modal queries on the database.
Defective macrophage phagocytosis of bacteria in COPD (2009)

Exacerbations of chronic obstructive pulmonary disease (COPD) are an increasing cause of hospitalisations and are associated with accelerated progression of airflow obstruction. Approximately half of COPD exacerbations are associated with bacteria and many patients have lower airways colonisation. This suggests that bacterial infection in COPD could be due to reduced pathogen removal. This study investigated whether bacterial clearance by macrophages is defective in COPD. Phagocytosis of fluorescently labelled polystyrene beads and Haemophillus influenzae and Streptococcus pneumoniae by alveolar macrophages and monocyte-derived macrophages (MDM) was assessed by fluorimetry and flow cytometry. Receptor expression was measured by flow cytometry. Alveolar macrophages and MDM phagocytosed polystyrene beads similarly. There was no difference in phagocytosis of beads by MDM from COPD patients compared with cells from smokers and nonsmokers. MDM from COPD patients showed reduced phagocytic responses to S. pneumoniae and H. influenzae compared with nonsmokers and smokers. This was not associated with alterations in cell surface receptor expression of toll-like receptor (TLR)2, TLR4, macrophage receptor with collagenous structure, cluster of differentiation (CD)163, CD36 or mannose receptor. Budesonide, formoterol or azithromycin did not suppress phagocytosis suggesting that reduced responses in COPD MDM were not due to medications. COPD macrophage innate responses are suppressed and may lead to bacterial colonisation and increased exacerbation frequency.
Insights into the hyperglycosylation of human chorionic gonadotropin revealed by glycomics analysis (2020)

Human chorionic gonadotropin (hCG) is a glycoprotein hormone that is essential for the maintenance of pregnancy. Glycosylation of hCG is known to be essential for its biological activity. "Hyperglycosylated" variants secreted during early pregnancy have been proposed to be involved in initial implantation of the embryo and as a potential diagnostic marker for gestational diseases. However, what constitutes "hyperglycosylation" is not yet fully understood. In this study, we perform comparative N-glycomic analysis of hCG expressed in the same individuals during early and late pregnancy to help provide new insights into hCG function, reveal new targets for diagnostics and clarify the identity of hyperglycosylated hCG. hCG was isolated in urine collected from women at 7 weeks and 20 weeks' gestation. hCG was also isolated in urine from women diagnosed with gestational trophoblastic disease (GTD). We used glycomics methodologies including matrix assisted laser desorption/ionisation-time of flight (MALDI-TOF) mass spectrometry (MS) and MS/MS methods to characterise the N-glycans associated with hCG purified from the individual samples. The structures identified on the early pregnancy (EP-hCG) and late pregnancy (LP-hCG) samples corresponded to mono-, bi-, tri-, and tetra-antennary N-glycans. A novel finding was the presence of substantial amounts of bisected type N-glycans in pregnancy hCG samples, which were present at much lower levels in GTD samples. A second novel observation was the presence of abundant LewisX antigens on the bisected N-glycans. GTD-hCG had fewer glycoforms which constituted a subset of those found in normal pregnancy. When compared to EP-hCG, GTD-hCG samples had decreased signals for tri- and tetra-antennary N-glycans. In terms of terminal epitopes, GTD-hCG had increased signals for sialylated structures, while LewisX antigens were of very minor abundance. hCG carries the same N-glycans throughout pregnancy but in different proportions. The N-glycan repertoire is more diverse than previously reported. Bisected and LewisX structures are potential targets for diagnostics. hCG isolated from pregnancy urine inhibits NK cell cytotoxicity in vitro at nanomolar levels and bisected type glycans have previously been implicated in the suppression of NK cell cytotoxicity, suggesting that hCG-related bisected type N-glycans may directly suppress NK cell cytotoxicity.