gebhart/patrepeval huggingface dataset:
Empowering business process simulation through automated model transformations (2014)

Simulation is one of the most relevant techniques that can be used in the business process management domain to effectively enact a continuous enhancement of business processes (BPs). However, the effectiveness of BP simulation is still limited for several reasons (e.g., lack of simulation know-how of BP analysts, simulation model parameters hard to determine, semantic gap between the business process model and the simulation model). To overcome these limitations, this paper proposes a model-driven method that introduces a set of model transformations to automate the generation of executable simulation code of a BP from its abstract definition in BPMN, the standard language for specifying business processes. The simulation code is specified in eBPMN, a Java-based domain-specific language that has been designed and implemented according to the BPMN execution semantics.
Anti‐proliferative and proapoptotic effects of (−)‐epigallocatechin‐3‐gallate on human melanoma: Possible implications for the chemoprevention of melanoma (2004)

Melanoma accounts for only about 4% of all skin cancer cases but most of skin cancer-related deaths. Standard systemic therapies such as interferon (IFN) have not been adequately effective in the management of melanoma. Therefore, novel approaches are needed for prevention and treatment of this disease. Chemoprevention by naturally occurring agents present in food and beverages has shown benefits in certain cancers including nonmelanoma skin cancers. Here, employing 2 human melanoma cell lines (A-375 amelanotic malignant melanoma and Hs-294T metastatic melanoma) and normal human epidermal melanocytes (NHEM), we studied the antiproliferative effects of epigallocatechin-3-gallate (EGCG), the major polyphenolic antioxidant present in green tea. EGCG treatment was found to result in a dose-dependent decrease in the viability and growth of both melanoma cell lines. Interestingly, at similar EGCG concentrations, the normal melanocytes were not affected. EGCG treatment of the melanoma cell lines resulted in decreased cell proliferation (as assessed by Ki-67 and PCNA protein levels) and induction of apoptosis (as assessed cleavage of PARP, TUNEL assay and JC-1 assay). EGCG also significantly inhibited the colony formation ability of the melanoma cells studied. EGCG treatment of melanoma cells resulted in a downmodulation of anti-apoptotic protein Bcl2, upregulation of proapoptotic Bax and activation of caspases -3, -7 and -9. Furthermore, our data demonstrated that EGCG treatment resulted in a significant, dose-dependent decrease in cyclin D1 and cdk2 protein levels and induction of cyclin kinase inhibitors (ckis) p16INK4a, p21WAF1/CIP1 and p27KIP1. Our data suggest that EGCG causes significant induction of cell cycle arrest and apoptosis of melanoma cells that is mediated via modulations in the cki-cyclin-cdk network and Bcl2 family proteins. Thus, EGCG, alone or in conjunction with current therapies, could be useful for the management of melanoma.
Lysophosphatidic Acid Stimulates Ovarian Cancer Cell Migration via a Ras-MEK Kinase 1 Pathway (2004)

Lysophosphatidic acid (LPA) is present at high concentrations in ascites and plasma of ovarian cancer patients. Studies conducted in experimental models demonstrate that LPA promotes ovarian cancer invasion/metastasis by up-regulating protease expression, elevating protease activity, and enhancing angiogenic factor expression. In this study, we investigated the effect of LPA on ovarian cancer migration, an essential component of cancer cell invasion. LPA stimulates both chemotaxis and chemokinesis of ovarian cancer cells and LPA-stimulated cell migration is G(I) dependent. Moreover, constitutively active H-Ras enhances ovarian cancer cell migration, whereas dominant negative H-Ras blocks LPA-stimulated cell migration, suggesting that Ras works downstream of G(i) to mediate LPA-stimulated cell migration. Interestingly, H-Ras mutants that specifically activate Raf-1, Ral-GDS, or phosphatidylinositol 3'-kinase are unable to significantly enhance ovarian cancer cell migration, suggesting that a Ras downstream effector distinct from Raf-1, Ral-GDS, and phosphatidylinositol 3'-kinase is responsible for LPA-stimulated cell migration. In this article, we demonstrate that LPA activates mitogen-activated protein kinase kinase 1 (MEKK1) in a G(i)-Ras-dependent manner and that MEKK1 activity is essential for LPA-stimulated ovarian cancer cell migration. Inhibitors that block MEKK1 downstream pathways, including MEK1/2, MKK4/7, and nuclear factor-kappa B pathways, do not significantly alter LPA-stimulated cell migration. Instead, LPA induces the redistribution of focal adhesion kinase to focal contact regions of the cytoplasm membrane, and this event is abolished by pertussis toxin, dominant negative H-Ras, or dominant negative MEKK1. Our studies thus suggest that the G(i)-Ras-MEKK1 signaling pathway mediates LPA-stimulated ovarian cancer cell migration by facilitating focal adhesion kinase redistribution to focal contacts.
[Influence of mechanical stretch on the expression of myosin heavy chain mRNA in cardiomyocyte subjected to ischemia and hypoxia]. (2004)

Down regulation of MHC mRNA expression by ischemia and hypoxia could be aggravated by mechanical stretch, indicating that mechanical stretch might be a possible cause for cardiac dysfunction.
Learning Lane Graph Representations for Motion Forecasting (2020)

We propose a motion forecasting model that exploits a novel structured map representation as well as actor-map interactions. Instead of encoding vectorized maps as raster images, we construct a lane graph from raw map data to explicitly preserve the map structure. To capture the complex topology and long range dependencies of the lane graph, we propose LaneGCN which extends graph convolutions with multiple adjacency matrices and along-lane dilation. To capture the complex interactions between actors and maps, we exploit a fusion network consisting of four types of interactions, actor-to-lane, lane-to-lane, lane-to-actor and actor-to-actor. Powered by LaneGCN and actor-map interactions, our model is able to predict accurate and realistic multi-modal trajectories. Our approach significantly outperforms the state-of-the-art on the large scale Argoverse motion forecasting benchmark.
Scientific Opinion on Flavouring Group Evaluation 401 (FGE.401): γ‐Glutamyl‐valyl‐glycine from chemical group 34 (2014)

International audience
Effect of Xylitol with Various Concentration and Duration on the Growth of Candida albicans (In Vitro study) (2009)

The growth of C. albicans is influenced by glucose intake. Xylitol is commonly used as sugar substitute. Reported effective concentrations of xylitol in reducing C. albicans growth in vitro were varied, 1%, 5%, and 10%. Objectives: Investigate the effect of different concentration and duration of xylitol exposure in inhibiting C. albicans growth in vitro. Method: Identification of C. albicans from oral swab of a male candidiasis patient was conducted using CHROMagar, confirmed by germ tube test. C. albicans suspension (108 cells/μl) were inoculated in SDB contained 1%, 5%, 10% xylitol, and without xylitol (as control), for 3 and 7 days, then incubated in 37oC on SDA and counted for their CFU after 48 hours. The C. albicans ATCC 10231 strain was used as a comparison. Results: After 3 days, increased concentration of xylitol (1%, 5%, 10%) lead to decrease growth of C. albicans, both the ATCC 10231 (125%; 51%; 14% respectively) and the clinical isolate (103%; 81%; 42%), p = 0.044. Significant lower growth of C. albicans compared to control were only seen in those exposed to 10% xylitol (p = 0.024). After 7 days, exposure of 1%, 5%, 10% xylitol did not significantly affect the growth of C. albicans (p = 0.396). Conclusion: The growth of C. albicans could be inhibited by 10% xylitol for 3 days. DOI: 10.14693/jdi.v16i1.12
THE INFLUENCE OF THE TEMPERATURE UPON THE FOAM STABILITY (2006)

We should pay attention to the foam stabitity in the foam application.The variety of the temperature affects the foam stability the foam stability very greatly.This paper discusses the change of the foam stability with the temperature going up.
Calcium Binding and Homoassociation of E-cadherin Domains (1997)

Cadherins are single pass transmembrane glycoproteins which mediate calcium dependent cell-cell adhesion by homophilic interactions. To reveal the molecular details of calcium binding and homoassociation, we recombinantly expressed in Escherichia coli a domain pair consisting of the first two domains of E-cadherin (ECAD12) and the single domains 1, 2, and 5. ECAD12 encompasses the most N-terminal of the four putative calcium-binding pockets in the extracellular region of E-cadherin. Equilibrium dialysis experiments revealed that the single domains do not bind Ca2+, but ECAD12 was found to bind three calcium ions. ECAD12 dimerizes (Kd = 0.08 +/- 0.02 mM) in the presence of Ca2+ as we could demonstrate by analytical ultracentrifugation. Calcium binding to ECAD12 induces conformational changes which were monitored by electrophoretic mobility and by circular dichroism. By analyzing our equilibrium dialysis data with a single binding site model, we found an average Kd of 460 microM for the three bound Ca2+. Assuming a model for three binding sites, which slightly increased the quality of the fit, we obtained two identical Kds of 330 microM and a third much higher Kd of 2 mM. The entire extracellular region of E-cadherin, which was recombinantly expressed in mammalian cells, binds nine Ca2+ with a much lower average Kd of 30 microM. Therefore, we conclude that the four calcium binding pockets are not identical. Since binding to ECAD12 occurs at Ca2+ concentrations close to those in the extracellular space, we suggest that the N-terminal domain pair might be involved in calcium regulation of E-cadherin mediated cell-cell adhesion.
Electrical and Sensing Properties of Single‐Walled Carbon Nanotubes Network: Effect of Alignment and Selective Breakdown (2009)

Abstract The electrical transport and NH 3 sensing properties of randomly oriented and aligned SWNT networks were presented and discussed. The results indicate that aligned SWNT‐FETs have better FET characteristics due to the reduced number of interconnected nodes. This was particularly true as the resistance of the devices increased. Gated electrical breakdown was implemented to selectively remove metallic (m‐) SWNTs, thereby reducing scattering centers. This technique provided significant improvements in FET characteristics resulting in greater on/off ratio (e.g. 10 4 ). AC dielectrophoretic alignment followed by selective electrical breakdown of m‐SWNTs can significantly enhance the semiconducting properties of SWNT networks which resulted in highly sensitive sensors.
Crystal Structure of the P38α-MAPKAP Kinase 2 Heterodimer (2007)

The p38 signaling pathway is activated in response to cell stress and induces production of proinflammatory cytokines. P38alpha is phosphorylated and activated in response to cell stress by MKK3 and MKK6 and in turn phosphorylates a number of substrates, including MAPKAP kinase 2 (MK2). We have determined the crystal structure of the unphosphorylated p38alpha-MK2 heterodimer. The C-terminal regulatory domain of MK2 binds in the docking groove of p38alpha, and the ATP-binding sites of both kinases are at the heterodimer interface. The conformation suggests an extra mechanism in addition to the regulation of the p38alpha and MK2 phosphorylation states that prevents phosphorylation of substrates in the absence of cell stress. Addition of constitutively active MKK6-DD results in rapid phosphorylation of the p38alpha-MK2 heterodimer.
Effects of the Backbone and Chemical Linker on the Molecular Conductance of Nucleic Acid Duplexes (2017)

Scanning tunneling microscope break junction measurements are used to examine how the molecular conductance of nucleic acids depends on the composition of their backbone and the linker group to the electrodes. Molecular conductances of 10 base pair long homoduplexes of DNA, aeg-PNA, γ-PNA, and a heteroduplex of DNA/aeg-PNA with identical nucleobase sequence were measured. The molecular conductance was found to vary by 12 to 13 times with the change in backbone. Computational studies show that the molecular conductance differences between nucleic acids of different backbones correlate with differences in backbone structural flexibility. The molecular conductance was also measured for duplexes connected to the electrode through two different linkers, one directly to the backbone and one directly to the nucleobase stack. While the linker causes an order-of-magnitude increase in the overall conductance for a particular duplex, the differences in the electrical conductance with backbone composition are preserved. The highest molecular conductance value, 0.06G<sub>0</sub>, was measured for aeg-PNA duplexes with a base stack linker. These findings reveal an important new strategy for creating longer and more complex electroactive, nucleic acid assemblies.
Solderability testing of alternate component termination materials with lead free solder alloys (2002)

The impending introduction of environmental legislation aimed at reducing the quantity of heavy metals disposed of into landfill sites has caused many organisations to look at their choice of interconnect media. A response to this challenge has been the recent activity to find drop-in replacements for tin/lead solders which do not contain lead. Switching from a well characterised and mature interconnection medium, such as the tin-lead and tin-lead-silver alloys, includes a number of potential risks if the proposed alternatives are not sufficiently understood. Candidate materials will have to satisfy a number of demands, such as those relating to reliability and manufacturing compatibility. Reliability demands include fatigue resistance, predictable failure modes, toughness, understanding of the microstructure evolution over time and satisfactory in-service environmental performance (temperature, vibration and humidity). Manufacturing demands include a reasonable liquidus temperature and percentage heat above liquidus to achieve satisfactory wetting, compatibility with current production equipment and product materials and a reasonable shelf life. This paper presents some of the results of an ongoing series of manufacturability trials at Loughborough which are assessing the solderability of various component termination finishes and styles with two candidate lead free solders under a number of different test regimes, these being representative of proposed manufacturing conditions (temperature and atmosphere inert).
Achieving Single‐Nucleotide Resolution of 5‐Methylcytosine Detection with TALEs (2014)

We report engineered transcription-activator-like effectors (TALEs) as the first DNA-binding molecules that detect 5-methylcytosine (mC) at single-nucleotide resolution with fully programmable sequence selectivity. This is achieved by a design strategy such that a single cytosine (C) in a DNA sequence is selectively interrogated for its mC-modification level by targeting with a discriminatory TALE repeat; other Cs are ignored by targeting with universal-binding TALE repeats.
Compact in-memory representation of XML data : design and implementation of a compressed DOM for data-centric documents (2002)

Over recent years XML has evolved from a document exchange format to a multi-purpose data storage and retrieval solution. To make use of the full potential of XML in the domain of large, data-centric documents it is necessary to have easy and fast access to individual data elements. We describe an implementation of the Document Object Model (DOM) that is designed with these objectives in mind. It uses compression to allow large documents to be stored in the computer's main memory. Query-relevant DOM methods are optimised to work on top of the created data structure. Measurements indicate that compression up to a factor of 5 is possible without losing the ability to directly address individual elements. No prior decompression is needed to query and locate nodes.
Effect of Adjuvant on Foliar Absorption and Activity of Clethodim and Polar Degradation Products of Clethodim (1991)

Research was conducted to determine foliar absorption of 14 C-clethodim and its polar degradation products with five adjuvants and to compare the relative herbicidal activity of clethodim and its polar degradation products. Differential 14 C-clethodim and 14 C-polar degradation products absorption occurred among the five adjuvants. Adjuvants that mediated rapid foliar absorption of clethodim did not always mediate rapid foliar uptake of polar degradation products. Herbicidal activity of clethodim exceeded activity of polar degradation products regardless of time of day of application or whether adjuvant was used. Inclusion of adjuvant was required for herbicidal activity of polar degradation products. Clethodim activity declined when applied at 0800 h EDT compared to applications at 2000 h EDT. To maximize herbicidal activity of clethodim, adjuvants should be selected that mediate rapid foliar absorption of both clethodim and the polar degradation products of clethodim and that minimize photodegradation of clethodim.
Adenosine Kinase Inhibitors. 6. Synthesis, Water Solubility, and Antinociceptive Activity of 5-Phenyl-7-(5-deoxy-β-<scp>d</scp>-ribofuranosyl)pyrrolo[2,3-<i>d</i>]pyrimidines Substituted at C4 with Glycinamides and Related Compounds (2005)

4-(Phenylamino)-5-phenyl-7-(5-deoxy-beta-D-ribofuranosyl)pyrrolo[2,3-d]pyrimidine 1 and related compounds known as "diaryltubercidin" analogues are potent inhibitors of adenosine kinase (AK) and are orally active in animal models of pain such as the rat formalin paw model (GP3269 ED50= 6.4 mg/kg). However, the utility of this compound class is limited by poor water solubility that can be attributed to the high energy of crystallization caused by stacking of the parallel C4 and C5 aryl rings in the solid state (compound 1 and GP3269 each with pH 7.4 solubility <0.05 microg/mL). To increase water solubility, the hydrophobic C4-phenylamino substituent was replaced with a more hydrophilic group, glycinamide. This modification resulted in improved water solubility while retaining AK inhibition potency. Analogues were studied where changes in the glycinamide moiety were combined with changes to the base and sugar. A lead compound, 4-N-(N-cyclopropylcarbamoylmethyl)amino-5-phenyl-7-(5-deoxy-beta-D-ribofuranosyl)pyrrolo[2,3-d]pyrimidine (16c) (IC50= 3 nM and water solubility = 32 +/- 9 microg/mL at pH 7.4), was further characterized in biological assays. Compound 16c exhibited strong oral efficacy in the rat formalin paw model (ED50 of 2.5 mg/kg). In the most advanced assay, 16c was found to inhibit bradykinin-induced licking in marmoset monkeys with an ED50 estimated at 0.9 mg/kg without producing evidence of side effects such as ataxia, sedation, and emesis at this dose. However, lethal toxicity in the rat formalin paw model occurred with high doses of 16c, and further work on this series was discontinued.
Extreme tensile strain states in La <sub>0.7</sub> Ca <sub>0.3</sub> MnO <sub>3</sub> membranes (2020)

A defining feature of emergent phenomena in complex oxides is the competition and cooperation between ground states. In manganites, the balance between metallic and insulating phases can be tuned by the lattice; extending the range of lattice control would enhance the ability to access other phases. We stabilized uniform extreme tensile strain in nanoscale La<sub>0.7</sub>Ca<sub>0.3</sub>MnO<sub>3</sub> membranes, exceeding 8% uniaxially and 5% biaxially. Uniaxial and biaxial strain suppresses the ferromagnetic metal at distinctly different strain values, inducing an insulator that can be extinguished by a magnetic field. Electronic structure calculations indicate that the insulator consists of charge-ordered Mn<sup>4+</sup> and Mn<sup>3+</sup> with staggered strain-enhanced Jahn-Teller distortions within the plane. This highly tunable strained membrane approach provides a broad opportunity to design and manipulate correlated electron states.
Underwater Calibration of Hydrophones at Very Low Frequencies from 30 Hz to 2 kHz (2018)

An underwater hydrophone calibration system based on vibrating column method has been established in the National Metrology Centre, Agency for Science Technology and Research, (NMC, A*STAR), the national metrology institute (NMI) of Singapore. It is used to determine sensitivities of hydrophones at very low frequencies ranging from 30 Hz to 2 kHz. The system is capable of calibrating hydrophones with measurement uncertainties less than 1.6 dB in the stated frequency range. This paper presents the methodology, system setup, measurement uncertainty evaluation, and performance validation. The system enables traceable underwater acoustic measurement at low frequency which has important applications in oil and gas exploration, defense technologies and ocean seismo-acoustic studies.
Raman spectroscopy of graphene-based materials and its applications in related devices (2018)

Graphene-based materials exhibit remarkable electronic, optical, and mechanical properties, which has resulted in both high scientific interest and huge potential for a variety of applications. Furthermore, the family of graphene-based materials is growing because of developments in preparation methods. Raman spectroscopy is a versatile tool to identify and characterize the chemical and physical properties of these materials, both at the laboratory and mass-production scale. This technique is so important that most of the papers published concerning these materials contain at least one Raman spectrum. Thus, here, we systematically review the developments in Raman spectroscopy of graphene-based materials from both fundamental research and practical (i.e., device applications) perspectives. We describe the essential Raman scattering processes of the entire first- and second-order modes in intrinsic graphene. Furthermore, the shear, layer-breathing, G and 2D modes of multilayer graphene with different stacking orders are discussed. Techniques to determine the number of graphene layers, to probe resonance Raman spectra of monolayer and multilayer graphenes and to obtain Raman images of graphene-based materials are also presented. The extensive capabilities of Raman spectroscopy for the investigation of the fundamental properties of graphene under external perturbations are described, which have also been extended to other graphene-based materials, such as graphene quantum dots, carbon dots, graphene oxide, nanoribbons, chemical vapor deposition-grown and SiC epitaxially grown graphene flakes, composites, and graphene-based van der Waals heterostructures. These fundamental properties have been used to probe the states, effects, and mechanisms of graphene materials present in the related heterostructures and devices. We hope that this review will be beneficial in all the aspects of graphene investigations, from basic research to material synthesis and device applications.