gebhart/patrepeval huggingface dataset:
Orthogonal RNNs and Long-Memory Tasks (2016)

Although RNNs have been shown to be powerful tools for processing sequential data, finding architectures or optimization strategies that allow them to model very long term dependencies is still an active area of research. In this work, we carefully analyze two synthetic datasets originally outlined in (Hochreiter and Schmidhuber, 1997) which are used to evaluate the ability of RNNs to store information over many time steps. We explicitly construct RNN solutions to these problems, and using these constructions, illuminate both the problems themselves and the way in which RNNs store different types of information in their hidden states. These constructions furthermore explain the success of recent methods that specify unitary initializations or constraints on the transition matrices.
Urinary 6-Hydroxymelatonin Excretion in Patients with Orthostatic Hypotension (1981)

The rates of melatonin formation and its diurnal fluctuations have been examined in patients with three types of orthostatic hypotension by measuring the urinary excretion rates of 6-hydroxymelatonin, the major metabolite of the pineal gland hormone. Deficiencies in the peripheral autonomic nervous system resulted in markedly diminished daily excretion (2.5 +/- 1.3 micrograms) relative to control (12.2 +/- 1.2). Patients with impaired central nervous system function exhibited low and/or abnormal excretion patterns. Two patients with sympathotonic orthostatic hypotension excreted greater amounts of 6-hydroxymelatonin than any of the control subjects. Melatonin secretion by the pineal gland can be used as an index of sympathetic nerve function. The study of patients with altered function may reveal the role of the pineal gland in human physiology.
The effect of glycols on the hydrophile‐lipophile balance and the micelle formation of nonionic surfactants (1982)

ABSTRACT The empirical hydrophile‐liophile balance (HLB) value of nonionic surfactants is an important parameter used to predict performance as, e.g., emulsifiers, solubilizers and wetting agents. However, the HLB value is based on an original molecular structure and does not take into account all the factors affecting the performance of nonionics, such as presence of additives, type of solvent, temperature, degree of hydration, structural modifications of the surfactant molecule and decomposition of surfactants. On a performance basis, where these factors come into play, a given nonionic surfactant may exhibit a multiplicity of apparent HLB values. Accordingly, we recently introduced the term “effective HLB value” which is a performance value which incorporates into the HLB the parameters listed above. The HLB value thus becomes a variable depending on the physical and chemical conditions at the time of the measurement. In this work, we investigated the effect of adding glycols and diglycols on the HLB using 3 different methods: cloud point, phenol index and critical micelle concentration (cmc). We found that this type of additive increases the cloud point, phenol index, cmc and the “effective HLB” of a polyoxyethylated nonionic surfactant. The effectiveness of the glycols in causing these increases was in the following order; dipropylene glycol > 1,4‐butanediol > 1,2‐propanediol > diethylene glycol > ethylene glycol. The solvent effect of glycols and diglycols on the hydrophobic and hydrophilic portions of the surfactant molecule are discussed. On the hydrocarbon part of the surfactant molecule, the solvents cause a weakening of the hydrophobic bond and an increase in the cmc. On the polyoxyethylene part of the molecule, the solvent may cause either an increase or a decrease in the cmc. The effect on the hydro‐philic portion is related to hydrogen bonding exhibited by the additives. The results obtained again suggest that the effective HLB value, which is a measure of the HLB under operative conditions, may be of greater practical significance than calculated HLB.
Adoption of Internet-Based Product Customization and Pricing Strategies (2000)

Abstract The Internet commerce technologies have significantly reduced sellers' costs of collecting buyer preference information and managing multiple prices. Advanced manufacturing technologies have also improved sellers' manufacturing flexibility. These changes allow an online seller to offer custom products at discriminatory prices. We show that these technologies offer significant advantages to an early adopter who gains market share and profits at the expense of the conventional seller. Not only does the customizing seller charge more for customized products, it also provides standard products but charges more for them than in a conventional market. The benefits of customization disappear when both the competing sellers adopt customization. They now compete not just on prices but also on degree of customization. Consequently, we see that the sellers "over-customize," to the detriment of their profits. Both the sellers know this when choosing their customization strategies and yet they both end up choosing to customize. A seller that does not customize sees a sharp decrease in profits if its competitor customizes. This is an instance of the "Prisoner's Dilemma" type of situation in technology adoption. This confirms some key findings in IT productivity and strategic IT investments literature. Keywords: ADOPTION OF INFORMATION TECHNOLOGY CUSTOMIZATION ELECEY WORDS AND PHRASES TRONIC COMMERCE FLEXIBLE MANUFACTURING SYSTEMS
Analysis of <i>pol</i> Integrase Sequences in Diverse HIV Type 1 Strains Using a Prototype Genotyping Assay (2009)

A prototype assay was used to genotype integrase (IN) from 120 HIV-1- infected IN inhibitor-naive adults from Argentina, Brazil, Cameroon, South Africa, Thailand, and Uganda. Subtype designations based on analysis of pol IN sequences were A (14), B (15), C (12), D (11), F (12), G (7), H (1), CRF01_AE (9), CRF02_AG (34), CRF22_01A1 (4), and CRF37_cpx (1). Ten (8.3%) of 120 samples had mutations associated with reduced susceptibility to the IN inhibitors, raltegravir and elvitegravir. Two samples had E92Q (both subtype B) and eight had E157Q (2A, 1C, 1D, 1F, 3 CRF02_AG). Some samples had other mutations selected by these drugs including T97A, and some had amino acid polymorphisms at positions associated with raltegravir and elvitegravir resistance. Mutations associated with other investigational HIV IN inhibitors were also identified. This suggests that HIV strains may vary in their natural susceptibility to HIV IN inhibitors.
Identifying a putative common binding site shared by substance P receptor and an anti-substance P monoclonal antibody (1995)

Substance P G-protein coupled receptor and the antigen recognition site of a monoclonal antibody raised against substance P share a stretch of five contiguous identical amino acids. This observation prompted us to build an atomic model of both the receptor and the antibody and to analyse their common features. In particular, we report here that a pocket of similar size and composition is present in both proteins, strongly suggesting a similarity in the mode of binding of both macromolecules to substance P. From the analysis of our models, the available data on the mode of binding of the antibody to substance P and recent data on substance P receptor mutants, we concluded that the pocket is very likely to be involved in binding of the C-terminal 'message sequence' of the tachykinin. This allowed us to suggest specific site-directed mutants of the receptor which should shed some light on the mechanism of peptide recognition by G-protein coupled receptors.
Differentially Private k-Means Clustering based on Dynamic Space Partitioning using a Quad-Tree (2018)

최근 공개되는 데이터에 적용하는 다양한 프라이버시 보호 기법들이 연구가 되어왔다. 그 중 차분 프라이버시는 본래의 데이터에 확률적인 노이즈를 더하여 공격자의 사전 지식에 상관없이 개인 정보를 보호한다. 기존 차분 프라이버시를 만족하는 k-평균 클러스터링은 데이터로부터 차분 프라이버시를 만족하는 히스토그램 형태로 바꾼 뒤. k-평균 클러스터링 알고리즘을 수행한다. 하지만 이는 데이터의 분포와 상관없이 등간격으로 히스토그램을 만들기 때문에 노이즈가 삽입되는 버킷이 많아지는 단점이 있다. 이를 해결하기 위해 본 논문에서는 데이터의 분포를 더 적은 버킷으로 나타낼 수 있는 쿼드 트리를 이용하여 히스토그램을 만든 뒤 k-평균을 찾는 알고리즘을 제안한다. 또한, 실험을 통해 기존의 알고리즘보다 더 좋은 성능을 가지는 것을 보인다.
Photochemistry of single wall carbon nanotubes embedded in a mesoporous silica matrix (2002)

By embedding single wall carbon nanotubes in a mesoporous silica matrix (SWNT@SiO2) the photochemical properties have been measured upon laser excitation at 266 nm; the SWNT@SiO2 exhibits long-lived emission (lambda em = 400 nm, tau = 0.95 microsecond), transient absorption (lambda max = 390 nm, tau = 11 microseconds) and is able to generate singlet oxygen in D2O.
Electrophilic natural products and their biological targets (2012)

The study of biologically active natural products has resulted in seminal contributions to our understanding of living systems. In the case of electrophilic natural products, the covalent nature of their interaction has largely facilitated the identification of their biological binding partners. In this review, we provide a comprehensive compilation of electrophilic natural products from all major chemical classes together with their biological targets. Covering Michael acceptor systems, ring-strained compounds and other electrophiles, such as esters or carbamates, we highlight representative and instructive examples for over 20 electrophilic moieties. The fruitful cooperation of natural product chemistry, medicinal chemistry and chemical biology has produced a collection of well-studied examples for how electrophilic natural products exert their biological functions that range from antibiotic to antitumor effects. Special emphasis is put on the elucidation of their respective biological targets via activity-based protein profiling, which together with the recent advancements in mass spectrometry has been crucial to the success of the field. The wealth of naturally occurring electrophilic moieties and their chemical complexity enables binding of a large variety of biological targets, such as enzymes of all classes, nonenzymatic proteins, DNA and other cellular compounds. With approximately 30,000 genes in the human genome but only 266 confirmed protein drug targets, the study of biologically active, electrophilic natural products has the potential to provide insights into fundamental biological processes and to greatly aid the discovery of new drug targets.
Cannabinoid receptor activation leads to massive mobilization of myeloid‐derived suppressor cells with potent immunosuppressive properties (2010)

Cannabinoid receptor activation by agents such as Δ(9)-tetrahydrocannabinol (THC) is known to trigger immune suppression. Here, we show that administration of THC in mice leads to rapid and massive expansion of CD11b(+)Gr-1(+) myeloid-derived suppressor cells (MDSC) expressing functional arginase and exhibiting potent immunosuppressive properties both in vitro and in vivo. The induction of MDSC by THC was associated with a significant increase in granulocyte CSF. Moreover, administration of anti-granulocyte CSF Ab inhibited the induction of MDSC by THC. THC was able to induce MDSC in TLR4 mutant C3H and C57BL10/ScN mice and hence acted independently of TLR4. Accumulation of MDSC in the periphery with a corresponding decrease in the proportion of CD11b(+)Gr-1(+) cells in the bone marrow, as well as in vivo BrdU labeling and cell-cycle analysis, showed that THC induced mobilization of these cells from bone marrow and their expansion in the periphery. Use of selective antagonists SR141716A and SR144528 against cannabinoid receptors 1 and 2, respectively, as well as receptor-deficient mice showed that induction of MDSC was mediated through activation of both cannabinoid receptors 1 and 2. These studies demonstrate that cannabinoid receptor signaling may play a crucial role in immune regulation via the induction of MDSC.
Antigen/major histocompatibility complex-specific activation of murine T cells transfected with functionally rearranged T-cell receptor genes. (1987)

The genes encoding the alpha and beta chains of the T-cell antigen receptor isolated from a cytochrome c-specific, major histocompatibility complex (MHC)-restricted murine T-cell hybridoma were introduced into a mouse T-cell line of helper lineage by electroporation. In order to examine the contributions of those gene products to antigen and/or MHC specificity, the resultant transfectants were tested for functional antigen and/or MHC recognition. Only those transfectants that express both the introduced genes (alpha and beta) contributed by the normal T cell can respond specifically to the appropriate antigen/MHC pair. None of the transfectants that express only one of the introduced genes (alpha or beta) of the normal T cell, or paired hybrid genes (i.e., one gene from the normal T cell and the other from the fusion partner), can respond to the same combination of antigen and MHC product recognized by the donor T cell. However, one clone expressing the transfected genes that encode the alpha and beta chains of the fusion partner shows reactivity to the antigen-presenting cells even in the absence of the antigens. These data suggest that the alpha beta heterodimer of the T-cell receptor is required to define the fine specificity of a T cell.
A flexible inversion algorithm for retrieval of aerosol optical properties from Sun and sky radiance measurements (2000)

The problem of deriving a complete set of aerosol optical properties from Sun and sky radiance measurements is discussed. Algorithm development is focused on improving aerosol retrievals by means of including a detailed statistical optimization of the influence of noise in the inversion procedure. The methodological aspects of such an optimization are discussed in detail and revised according to both modern findings in inversion theory and practical experience in remote sensing. Accordingly, the proposed inversion algorithm is built on the principles of statistical estimation: the spectral radiances and various a priori constraints on aerosol characteristics are considered as multisource data that are known with predetermined accuracy. The inversion is designed as a search for the best fit of all input data by a theoretical model that takes into account the different levels of accuracy of the fitted data. The algorithm allows a choice of normal or lognormal noise assumptions. The multivariable fitting is implemented by a stable numerical procedure combining matrix inversion and univariant relaxation. The theoretical inversion scheme has been realized in the advanced algorithm retrieving aerosol size distribution together with complex refractive index from the spectral measurements of direct and diffuse radiation. The aerosol particles are modeled as homogeneous spheres. The atmospheric radiative transfer modeling is implemented with well‐established publicly available radiative transfer codes. The retrieved refractive indices can be wavelength dependent; however, the extended smoothness constraints are applied to its spectral dependence (and indirectly through smoothness constraints on retrieved size distributions). The positive effects of statistical optimization on the retrieval results as well as the importance of applying a priori constraints are discussed in detail for the retrieval of both aerosol size distribution and complex refractive index. The developed algorithm is adapted for the retrieval of aerosol properties from measurements made by ground‐based Sun‐sky scanning radiometers used in the Aerosol Robotic Network (AERONET). The results of numerical tests together with examples of experimental data inversions are presented.
Kv3.1–Kv3.2 Channels Underlie a High-Voltage–Activating Component of the Delayed Rectifier K<sup>+</sup>Current in Projecting Neurons From the Globus Pallidus (1999)

The globus pallidus plays central roles in the basal ganglia circuitry involved in movement control as well as in cognitive and emotional functions. There is therefore great interest in the anatomic and electrophysiological characterization of this nucleus. Most pallidal neurons are GABAergic projecting cells, a large fraction of which express the calcium binding protein parvalbumin (PV). Here we show that PV-containing pallidal neurons coexpress Kv3. 1 and Kv3.2 K+ channel proteins and that both Kv3.1 and Kv3.2 antibodies coprecipitate both channel proteins from pallidal membrane extracts solubilized with nondenaturing detergents, suggesting that the two channel subunits are forming heteromeric channels. Kv3.1 and Kv3.2 channels have several unusual electrophysiological properties when expressed in heterologous expression systems and are thought to play special roles in neuronal excitability including facilitating sustained high-frequency firing in fast-spiking neurons such as interneurons in the cortex and the hippocampus. Electrophysiological analysis of freshly dissociated pallidal neurons demonstrates that these cells have a current that is nearly identical to the currents expressed by Kv3.1 and Kv3.2 proteins in heterologous expression systems, including activation at very depolarized membrane potentials (more positive than -10 mV) and very fast deactivation rates. These results suggest that the electrophysiological properties of native channels containing Kv3.1 and Kv3.2 proteins in pallidal neurons are not significantly affected by factors such as associated subunits or postranslational modifications that result in channels having different properties in heterologous expression systems and native neurons. Most neurons in the globus pallidus have been reported to fire sustained trains of action potentials at high-frequency. Kv3.1-Kv3.2 voltage-gated K+ channels may play a role in helping maintain sustained high-frequency repetitive firing as they probably do in other neurons.
Analyzing Cellular Internalization of Nanoparticles and Bacteria by Multi-spectral Imaging Flow Cytometry (2012)

Nanoparticulate systems have emerged as valuable tools in vaccine delivery through their ability to efficiently deliver cargo, including proteins, to antigen presenting cells. Internalization of nanoparticles (NP) by antigen presenting cells is a critical step in generating an effective immune response to the encapsulated antigen. To determine how changes in nanoparticle formulation impact function, we sought to develop a high throughput, quantitative experimental protocol that was compatible with detecting internalized nanoparticles as well as bacteria. To date, two independent techniques, microscopy and flow cytometry, have been the methods used to study the phagocytosis of nanoparticles. The high throughput nature of flow cytometry generates robust statistical data. However, due to low resolution, it fails to accurately quantify internalized versus cell bound nanoparticles. Microscopy generates images with high spatial resolution; however, it is time consuming and involves small sample sizes. Multi-spectral imaging flow cytometry (MIFC) is a new technology that incorporates aspects of both microscopy and flow cytometry that performs multi-color spectral fluorescence and bright field imaging simultaneously through a laminar core. This capability provides an accurate analysis of fluorescent signal intensities and spatial relationships between different structures and cellular features at high speed. Herein, we describe a method utilizing MIFC to characterize the cell populations that have internalized polyanhydride nanoparticles or Salmonella enterica serovar Typhimurium. We also describe the preparation of nanoparticle suspensions, cell labeling, acquisition on an ImageStream(X) system and analysis of the data using the IDEAS application. We also demonstrate the application of a technique that can be used to differentiate the internalization pathways for nanoparticles and bacteria by using cytochalasin-D as an inhibitor of actin-mediated phagocytosis.
Studies on the Chemical Synthesis of Potential Antimetabolites. 32.<sup>1</sup>Synthesis of β-<u>D</u>-Pentofuranosyldeazaadenines as Candidate Inhibitors for<u>S</u>-Adenosylhomocysteinases and Methyltransferases (1982)

Abstract 9-β-D-Arabinofuranosyldeazaadenines [1-deaza-araA (4a) and 3-deaza-araA (4b)] were prepared from 6-chloro-β-D-ribofuranosyl-1- (6a) and -3-deazapurine (6b), respectively. Synthesis of 2′-deoxy-1-deaza-adenosine (5a) from 1-deazaadenosine (6c) is also described.
Self-assembling nanomicelles of a novel camptothecin prodrug engineered with a redox-responsive release mechanism (2011)

A novel amphiphilic camptothecin prodrug that spontaneously arranges into nanomicelles which preferentially release the cytotoxic drug under tumor-relevant reductive conditions is designed.
Skeletal muscle LIM protein 1 (SLIM1/FHL1) induces α<sub>5</sub>β<sub>1</sub>-integrin-dependent myocyte elongation (2003)

Skeletal muscle LIM protein 1 (SLIM1/FHL1) contains four and a half LIM domains and is highly expressed in skeletal and cardiac muscle. Elevated SLIM1 mRNA expression has been associated with postnatal skeletal muscle growth and stretch-induced muscle hypertrophy in mice. Conversely, SLIM1 mRNA levels decrease during muscle atrophy. Together, these observations suggest a link between skeletal muscle growth and increased SLIM1 expression. However, the precise function of SLIM1 in skeletal muscle, specifically the role of SLIM1 during skeletal muscle differentiation, is not known. This study investigated the effect of increased SLIM1 expression during skeletal muscle differentiation. Western blot analysis showed an initial decrease followed by an increase in SLIM1 expression during differentiation. Overexpression of SLIM1 in Sol8 or C2C12 skeletal muscle cell lines, at levels observed during hypertrophy, induced distinct effects in differentiating myocytes and undifferentiated reserve cells, which were distinguished by differential staining for two markers of differentiation, MyoD and myogenin. In differentiating skeletal myocytes, SLIM1 overexpression induced hyperelongation, which, by either plating cells on poly-l-lysine or using a series of peptide blockade experiments, was shown to be specifically dependent on ligand binding to the alpha5beta1-integrin, whereas in reserve cells, SLIM1 overexpression induced the formation of multiple cytoplasmic protrusions (branching), which was also integrin mediated. These results suggest that SLIM1 may play an important role during the early stages of skeletal muscle differentiation, specifically in alpha5beta1-integrin-mediated signaling pathways.
Mobile Radio Propagation (2009)

This is an IEEE classic reissue of the book published by John Wiley & Sons in 1974.This definitive text and reference covers all aspects of microwave mobile systems design. Encompassing ten years of advanced research in the field, it reviews basic microwave theory, explains how cellular systems work and presents useful techniques for effective systems development. Key features include: complete coverage of microwave propagation techniques to design successful cellular systems, extensive chapters covering the broad fundamentals of microwave usage in mobile radio propagation and the functions of mobile radio antennas, comprehensive treatment of modulation methods, interference, noise, layout and control of high-capacity systems, and more! The return of this classic volume should be welcomed by all those seeking an authoritative and complete source of information on this emerging technology.