gebhart/patrepeval huggingface dataset:
Nef protein of human immunodeficiency virus type 1: evidence against its role as a transcriptional inhibitor. (1989)

The type 1 human immunodeficiency virus (HIV-1) encodes a 27-kDa protein termed Nef (negative factor). Nef has been reported to down-regulate viral gene transcription directed by the HIV-1 long terminal repeat. To assess the possible role of Nef in the initiation or maintenance of viral latency, we prepared two different nef expression vectors (pNEF from the HXB-3 proviral clone; pNEF-2/3 from HXB-2 and HXB-3) and a control vector containing a frameshift mutation in the HXB-3 nef coding sequence (pNEF-fs). Consistent with prior studies, the Nef proteins produced by pNEF and pNEF-2/3 were approximately 27 kDa in size, posttranslationally modified by myristoylation, and primarily associated with cytoplasmic membrane structures. However, in contrast to previous reports, these Nef proteins failed to inhibit transcriptional activity of the HIV-1 long terminal repeat in any of a variety of cell types, including primary human T lymphocytes, Jurkat or YT-1 leukemic T cells, U-937 promonocytic cells, and nonlymphoid COS cells. Furthermore, HXB-3 proviral clones of HIV-1 containing either a wild-type or mutated version of the nef gene replicated in an indistinguishable manner when transfected into COS cells. Our findings suggest that Nef is neither a transcriptional inhibitor nor a negative viral factor under these assay conditions. Rather, we suggest that the primary biological function of this conserved HIV-1 protein has yet to be defined, perhaps reflecting an intrinsic shortcoming in the in vitro experimental systems presently available for the study of HIV-1.
On the Use of Polyelectrolytes and Polymediators in Organic Electrosynthesis (2017)

Although organic electrosynthesis is generally considered to be a green method, the necessity for excess amounts of supporting electrolyte constitutes a severe drawback. Furthermore, the employment of redox mediators results in an additional separation problem. In this context, we have explored the applicability of soluble polyelectrolytes and polymediators with the TEMPO-mediated transformation of alcohols into carbonyl compounds as a test reaction. Catalyst benchmarking based on cyclic voltammetry studies indicated that the redox-active polymer can compete with molecularly defined TEMPO species. Alcohol oxidation was also highly efficient on a preparative scale, and our polymer-based approach allowed for the separation of both mediator and supporting electrolyte in a single membrane filtration step. Moreover, we have shown that both components can be reused multiple times.
Simulations of High Count Rate Performance of Hybrid Pixel Detectors with Algorithms Dealing with Charge Sharing (2018)

Hybrid pixel detectors, operating in a single photon counting mode provide noiseless imaging, good spatial resolution and adjustable energy thresholds. Decreasing pixel size allows operation with photon fluxes of higher intensities. However, with decreasing pixel pitch, a detector suffers more significantly from charge sharing. Therefore, various algorithms are implemented on-chip to mitigate charge sharing effect and prevent the counts loss. Nonetheless, if the algorithm dealing with charge sharing is implemented, detector dead time increases. The aim of this paper is to study how the count rate performance of hybrid pixel detectors is limited by using anti charge sharing techniques.
On the Origin of Diastereoselectivity in [2 + 2 + 2] Cycloisomerization of Chiral Triynes:  Controlling Helicity of Helicene-like Compounds by Thermodynamic Factors (2008)

Diastereoselective CoI-mediated [2 + 2 + 2] cycloisomerization of CH3O-substituted optically pure aromatic triynes to obtain nonracemic functionalized helicene-like compounds (comprising a penta-, hexa-, and heptacyclic helical scaffold) was studied. The stereochemical outcome of the reaction at 140 °C using CpCo(CO)2 was controlled by thermodynamic factors yielding diastereomeric ratios up to 91:9. Using CpCo(ethylene)2 at room temperature, a kinetic control took place leading to the loss of stereoselectivity. Barriers to epimerization for selected helicene-like compounds were measured indicating their lower configurational stability in comparison to the parent carbohelicenes. Free energy differences between corresponding pairs of diastereomers (calculated at the DFT B3LYP/TZV+P level) were in excellent agreement with the experimental data and allowed for the prediction of the stereochemical outcome of the reaction. An optically pure hexacyclic helicene-like alcohol was prepared on a multigram scale. Its X-ray structure confirmed the previous helicity assignments being based on 1H−1H correlations in ROESY 1H NMR spectra.
The effectiveness of ovulation induction and intrauterine insemination in the treatment of persistent infertility: a meta-analysis (1997)

A systematic review was conducted to evaluate the effectiveness of intrauterine insemination (IUI) with or without ovarian stimulation using gonadotrophin in the treatment of persistent infertility. Relevant randomized controlled trials were identified by a diverse strategy including a hand search of 43 core journals from 1966 to the present. Two approaches to meta-analysis were used to summarize data. First, using a standard Mantel-Haenszel approach, eight trials comparing FSH/IUI with FSH/timed intercourse for unexplained infertility were combined. The common odds ratio for pregnancy was 2.37 [95% confidence interval (CI), 1.43, 3.90], suggesting a significant improvement with IUI following ovulation induction in this patient group. Although the data were statistically homogeneous, clinically important heterogeneity was present. Second, across all diagnostic groups, the independent effects of treatment with follicle stimulating hormone (FSH), clomiphene citrate, IUI, as well as the diagnoses of male factor and endometriosis were assessed using stepwise logistic regression. Based on 5214 cycles reported in 22 trials, the odds ratio for pregnancy associated with FSH use was 2.35 (95% CI, 1.87, 2.94) for IUI, 2.82 (95% CI, 2.18, 3.66) for male factor, 0.48 (95% CI, 0.37, 0.61), and for endometriosis 0.45 (95% CI, 0.27, 0.76). This summary of the best available evidence may prove useful in counselling couples who are considering FSH and/or IUI therapy.
Nucleosides and Nucleotides. 208. Alternate-Strand Triple-Helix Formation by the 3‘-3‘-Linked Oligodeoxynucleotides with the Anthraquinonyl Group at the Junction Point (2001)

The synthesis of 3'-3'-linked oligodeoxynucleotides (ODNs) with the anthraquinonyl group at the junction point is described. The ODNs were synthesized on a DNA synthesizer using a controlled pore glass (CPG) carrying pentaerythritol that has an intercalator at one of the four hydroxymethyl groups. Stability of the triplexes with the target duplexes was studied by thermal denaturation. The 3'-3'-linked ODNs with the anthraquinonyl group enhanced the thermal stability of the triplexes when compared with those without the intercalator and the unmodified nonamer 10. It was found that the ODNs 12 and 13 carrying the anthraquinonyl groups can form thermally stable triplexes by skipping two or three extra base pairs between two binding domains of the target duplexes. The ability of the 3'-3'-linked ODNs to inhibit cleavage of the target DNA 22 by the restriction enzyme Hind III was tested. It was found that the 3'-3'-linked ODN 16 with the anthraquinonyl group at the junction point inhibited the cleavage by the enzyme more effectively than the nonamer 14 and the 3'-3'-linked ODN 15 without the intercalator.
Performance evaluation of SPRINT, a single photon ring tomography for brain imaging. (1984)

SPRINT, a prototype single photon tomograph, has been designed primarily for high-resolution brain imaging in humans with I-123-labeled compounds such as iodoamphetamine, hydroxyiodopropyldiamine (HIPDM), and iodobenzene (IBZ). SPRINT uses a ring of stationary, discrete Nal detectors, and fan-beam sampling is accomplished with a rotating eight-slit aperture ring that acquires a complete projection set in 1/8 revolution. In-plane and cross-plane resolutions are 8mm and 10mm FWHM, respectively, measured on axis. Sensitivity with an 18% energy window is 1000 cprs per microCi/cc for Tc-99m in a 20 cm diameter phantom. A detailed evaluation of system performance has been completed, and preliminary human brain blood flow images have been obtained using HIPDM.
Macular and optic disc edema and retinal vascular leakage in familial amyloid polyneuropathy with a transthyretin Val30Met mutation: a case report (2014)

To the best of our knowledge, this is the first report of a rare ocular manifestation of familial amyloid polyneuropathy which represents a new therapeutic challenge. Intravitreal injection of sustained release dexamethasone implant and panretinal photocoagulation may be an effective eye-saving therapeutic approach.
Spraying modes in coaxial jet electrospray with outer driving liquid (2005)

Coaxial jet electrospray is a technique to generate microencapsules, which uses electric forces to create a coaxial microjet from two immiscible liquids. Compound droplets with narrow size distribution are produced after the jet breaks up. In this paper, the spraying modes are investigated experimentally with proper flow rates of the inner and outer liquids. Ethanol/glycerol/tween mixture (outer liquid) and cooking oil (inner liquid) are fed into the gap between outer and inner capillaries and the inner capillary, respectively. The spraying modes presented in our experiments are “dripping mode,” “dripping mode in spindle,” “cone-jet mode,” “pulse mode in cone,” and “multijets mode” sequentially, as the applied voltage increases. The region of stable cone-jet mode extends with decrease of the outer liquid flow rate and increase of the inner one. It is found that the spray phenomena are mainly determined by properties of the outer liquid, which is viscous and electric conductive enough. A rudimentary physical model is developed, in which both the viscosity and liquid interface tension are taken into account.
New Results in Chaotic Time-Reversed Electromagnetics: High Frequency One-Recording-Channel Time-Reversal Mirror (2007)

We experimentally demonstrate a new electromagnetic one-recording--channel time-reversal mirror that can operate at high frequencies and high bandwidths. The experiments are carried out in a 1 m 3 ray-chaotic enclosure using two simple antennas. The input is a 7.0 GHz signal that is amplitude modulated with a 60 ns long pulse. The time-reversal focused signal has a peak-signal-to-noise ratio of about 9 dB, and is very sensitive to small perturbations to the ray-chaotic enclosure. The results are consistent with expectations for single-recording-channel time-reversal mirrors, and establish a new platform for study of fundamental issues in time-domain wave chaos, as well as novel applications.
Configurable and scalable high throughput turbo decoder architecture for multiple 4G wireless standards (2008)

In this paper, we propose a novel multi-code turbo decoder architecture for 4G wireless systems. To support various 4G standards, a configurable multi-mode MAP (maximum a posteriori) decoder is designed for both binary and duo-binary turbo codes with small resource overhead (less than 10%) compared to the single-mode architecture. To achieve high data rates in 4G, we present a parallel turbo decoder architecture with scalable parallelism tailored to the given throughput requirements. High-level parallelism is achieved by employing contention-free interleavers. Multi-banked memory structure and routing network among memories and MAP decoders are designed to operate at full speed with parallel interleavers. We designed a very low-complexity recursive on-line address generator supporting multiple interleaving patterns, which avoids the interleaver address memory. Design trade-offs in terms of area and power efficiency are explored to find the optimal architectures. A 711 Mbps data rate is feasible with 32 Radix-4 MAP decoders running at 200 MHz clock rate.
Kernel Optimization for Blind Motion Deblurring with Image Edge Prior (2012)

Image motion deblurring with unknown blur kernel is an ill‐posed problem. This paper proposes a blind motion deblurring approach that solves blur kernel and the latent image robustly. For kernel optimization, an edge mask is used as an image prior to improve kernel update, then an edge selection mask is adopted to improve image update. In addition, an alternative iterative method is introduced to perform kernel optimization under a multiscale scheme. Moreover, for image restoration, a total‐variation‐(TV‐) based algorithm is proposed to recover the latent image via nonblind deconvolution. Experimental results demonstrate that our method obtains accurate blur kernel and achieves better deblurring results than previous works.
Induced Systemic Resistance by Fluorescent <i>Pseudomonas</i> spp. (2007)

ABSTRACT Fluorescent Pseudomonas spp. have been studied for decades for their plant growth-promoting effects through effective suppression of soilborne plant diseases. The modes of action that play a role in disease suppression by these bacteria include siderophore-mediated competition for iron, antibiosis, production of lytic enzymes, and induced systemic resistance (ISR). The involvement of ISR is typically studied in systems in which the Pseudomonas bacteria and the pathogen are inoculated and remain spatially separated on the plant, e.g., the bacteria on the root and the pathogen on the leaf, or by use of split root systems. Since no direct interactions are possible between the two populations, suppression of disease development has to be plant-mediated. In this review, bacterial traits involved in Pseudomonas-mediated ISR will be discussed.
Convalescence of Indian economy through green growth (2021)

Green economy being universal can bring transformative changes to our economy by adopting environment friendly sustainable measures. To achieve this, government priorities has to be shifted and a right balance has to be maintained between our national priorities and our responsibilities towards the larger humanity, of which we are a part. This could be a real challenge to the developing and developed nations but it needs to be resolved urgently by transforming the economy to the green frontier. This paper highlights about the present status of green economy in the Indian context and the initiatives taken to sustain the ecosystem in consilience with economic growth. By addressing the significance of green economy this paper points out certain policies that need to be adopted in order to bridge the aperture between economy and environment so that twain could prosper.
Onion-like multilayered polymer capsules synthesized by a bioinspired inside-out technique (2017)

Diverse structures in nature, such as the spinal disc and the onion have many concentric layers, and are created starting from the core and proceeding outwards. Here, we demonstrate an inside-out technique for creating multilayered polymer capsules. First, an initiator-loaded gel core is placed in a solution of monomer 1. The initiator diffuses outward and induces polymerization, leading to a shell of polymer 1. Thereafter, the core-shell structure is loaded with fresh initiator and placed in monomer 2, which causes a concentric shell of polymer 2 to form around the first shell. This process can be repeated to form multiple layers, each of a distinct polymer, and of controlled layer thickness. We show that these multilayered capsules can exhibit remarkable mechanical resilience as well as stimuli-responsive properties. The release of solutes from these capsules can be tailored to follow specific profiles depending on the chemistry and order of adjacent layers.Multiple concentric layers are present in a variety of structures present in nature, including the onion. Here, the authors show an inside-out strategy to synthesize multilayered polymer capsules, with different layers having specific composition and thereby specific responses to stimuli such as pH and temperature.
Catalytic activity of Cu nanoparticles supported on Fe<sub>3</sub>O<sub>4</sub>–polyethylene glycol nanocomposites for the synthesis of substituted imidazoles (2014)

In the present study, we carried out chemical synthesis and characterization for a Fe3O4–polyethylene glycol–Cu nanocomposite (Fe3O4–PEG–Cu). Firstly, poly(ethylene glycol) was functionalized using cyanuric chloride (PEG-Cl4). Then PEG-Cl4 was linked with Fe3O4 nanoparticles via formation of covalent bonds (Fe3O4–PEG). The Cu nanoparticles were supported by reducing copper ammonia complexes with hydrazine hydrate on the surface of this nanocomposite. Nanoparticles have been characterized by FT-IR, XRD, SEM, EDAX, TGA-DTA, AAS and VSM techniques. The catalytic activity of the Fe3O4–PEG–Cu catalyst was evaluated for the synthesis of highly substituted imidazoles. This new catalyst was found to be a highly active and green catalyst for the synthesis of 2,4,5-trisubstituted imidazoles and 1,2,4,5-substituted imidazoles. The synthesized catalysts displayed magnetic properties, which allowed their fast separation from the reaction medium using a simple magnet.
Myocardial fibrosis in nonhuman primate with pressure overload hypertrophy. (1989)

Characteristics of pressure overload hypertrophy are known to include an accumulation of collagen (or fibrosis) and a biochemical remodeling of fibrillar type I and III collagens. The corresponding structural nature of myocardial fibrosis is less clear. This light morphologic study was undertaken to address this issue in the hypertrophied left ventricle of the nonhuman primate with experimental hypertension. For this purpose, the picrosirius red technique and polarization microscopy were used to examine the myocardium during the evolutionary, early, and late phases of established hypertrophy corresponding to 4, 35, and 88 weeks of experimental hypertension. Evidence of increased thin perimysial fiber formation, together with collagen fiber disruption and edema at 4 weeks of hypertrophy, was found when the chamber volume to left ventricular mass ratio was reduced. After 35 weeks, when this ratio was again normal, a greater number of intermuscular spaces contained both thick and thin perimysial fibers. In addition to this interstitial fibrosis, a reactive fibrosis consisting of a meshwork of thick and thin perimysial fibers was seen extending over muscle fibers. Finally, at 88 weeks, this fibrous meshwork had encircled muscle and there now was evidence of cell necrosis. The accompanying replacement fibrosis consisted of yet another distinctive orthogonal grid of thick and thin collagen fibers. Thus, a continuum of fibrillar collagen remodeling was seen in pressure overload hypertrophy in the nonhuman primate myocardium. Structurally distinct patterns of myocardial fibrosis were recognized based on the alignment of perimysial fibers with muscle that may explain the cellular remodeling and altered mechanical behavior of the concentrically hypertrophied myocardium.
INTRODUCTION (2005)

The 45th Annual Preconference of the Rare Books and Manuscripts Section of the Association of College and Research Libraries was titled “Ebb & Flow: The Migration of Collections to American Libraries.” From June 21–June 24, 2004, on the campus of Yale University, speakers addressed a variety of topics around this theme. Plenary speakers addressed the migration of books to North America during the colonial period, the development of university library collections in the nineteenth century, the epic collecting of J. Pierpont Morgan, and the post-World War II antiquarian book trade. Alice Prochaska, Yale University librarian, opened the conference with . . .
Autosomal dominant HMSN with proximal involvement: new Brazilian cases (2009)

We report four Brazilian siblings with Autosomal Dominant Hereditary Motor Sensory Neuropathy with Proximal Dominant Involvement (HMSN-P), a rare form of HMSN, that was characterized by proximal dominant muscle weakness and atrophy onset after the age of 30 years, fasciculation, arreflexia and sensory disturbances with autosomal dominant inheritance. Electrophysiological study and sural nerve biopsy were in the accordance with axonal sensory motor polyneuropathy and laboratorial analysis disclosed serum lipids and muscle enzymes abnormalities. Our report is the first done by a group outside Japan, where the disease initially seemed to be restricted and stressed the phenotypic variability from the original report.
Fabry disease: Characterization of ?-galactosidase A double mutations and the D313Y plasma enzyme pseudodeficiency allele (2003)

Fabry disease, an X-linked inborn error of glycosphingolipid catabolism, results from mutations in the gene encoding the lysosomal exoglycohydrolase, alpha-galactosidase A (alpha-Gal A; GLA). In two unrelated classically affected males, two alpha-Gal A missense mutations were identified: R112C + D313Y (c.334C>T + c.937G>T) and C172G + D313Y (c.514T>G + c.937G>T). The D313Y lesion was previously identified in classically affected males as the single mutation [Eng et al., 1993] or in cis with another missense mutation, D313Y + G411D (c.937G>T + c.1232G>A) [Guffon et al., 1998]. To determine whether the D313Y mutation was a deleterious mutation or a coding region sequence variant, the frequency of D313Y in normal X-chromosomes, as well as its enzymatic activity and subcellular localization in COS-7 cells was determined. D313Y occurred in 0.45% of 883 normal X-chromosomes, while the R112C, C172G, and G411D missense mutations were not detected in over 500 normal X-chromosomes. Expression of D313Y in COS-7 cells resulted in approximately 60% of wild-type enzymatic activity and showed lysosomal localization, while R112C, C172G, G411D, and the double-mutated constructs had markedly reduced or no detectable activity and were all retained in the endoplasmic reticulum. The expressed D313Y enzyme was stable at lysosomal pH (pH 4.6), while at neutral pH (pH 7.4), it had decreased activity. A molecular homology model of human alpha-Gal A, based on the X-ray crystal structure of chicken alpha-galactosidase B (alpha-Gal B; alpha-N-acetylgalactosaminidase) was generated [Garman et al., 2002], which provided evidence that D313Y did not markedly disrupt the alpha-Gal A enzyme structure. Thus, D313Y is a rare exonic variant with about 60% of wild-type activity in vitro and reduced activity at neutral pH, resulting in low plasma alpha-Gal A activity.