gebhart/patrepeval huggingface dataset:
Molecular cloning and expression of human leukotriene-C4 synthase. (1994)

Leukotriene-C4 synthase (LTC4S; EC 2.5.1.37) catalyzes the committed step in the biosynthesis of the peptidoleukotrienes, which are important in the pathogenesis of asthma. Antibodies were generated to a synthetic peptide based on the partial amino acid sequence previously reported for human LTC4S [Nicholson, D.W., Ali, A., Vaillancourt, J.P., Calaycay, J.R., Mumford, R.A., Zamboni, R.J. & Ford-Hutchinson, A. W. (1993) Proc. Natl. Acad. Sci. USA 90, 2015-2019] and specifically bound detergent-solubilized LTC4S obtained from THP-1 cells, confirming that the published sequence is associated with enzyme activity. Inosine-containing oligonucleotides based on the partial protein sequence were used to isolate a 679-bp cDNA for LTC4S from THP-1 cells. The cDNA contains an open reading frame that encodes a 150-amino acid protein (M(r) = 16,568) that has a calculated pI value of 11.1. The deduced protein sequence is composed predominantly of hydrophobic amino acids; hydropathy analysis predicts three transmembrane domains connected by two hydrophilic loops. Analysis of the deduced sequence identified two potential protein kinase C phosphorylation sites and a potential N-linked glycosylation site. The amino acid sequence for human LTC4S is unique and shows no homology to other glutathione S-transferases. LTC4S was found to be most similar to 5-lipoxygenase activating protein (31% identity, 53% similarity), another protein involved in leukotriene biosynthesis. Active enzyme was expressed in bacterial, insect, and mammalian cells as shown by the biosynthesis of LTC4 in incubation mixtures containing LTA4 and reduced glutathione. The cloning and expression of human LTC4S provide the basis for a better understanding of this key enzyme in peptidoleukotriene biosynthesis.
Measured sound speeds and acoustic nonlinearity parameter in liquid water up to 523 K and 14 MPa (2016)

Sound speed in liquid water at temperatures between 275 and 523 K and pressures up to 14 MPa were experimentally determined using a high temperature/high pressure capable acoustic resonance cell. The measurements enabled the determination of the temperature and pressure dependence of sound speed and thus the parameter of acoustic nonlinearly, B/A, over this entire P-T space. Most of the sound speeds measured in this work were found to be within 0.4% of the IAPWS-IF97 formulation, an international standard for calculating sound speed in water as a function of temperature and pressure. The values for B/A determined at laboratory ambient pressure and at temperatures up to 356 K, were found to be in general agreement with values calculated from the IAPWS-IF97 formulation. Additionally, B/A at 293 K was found to be 4.6, in agreement with established literature values.
Mechanical Testing for Stretchable Electronics (2017)

Stretchable electronics have been a subject of increased research over the past decade (Lacour, S., et al., 2006, “Mechanisms of Reversible Stretchability of Thin Metal Films on Elastomeric Substrates,” Appl. Phys. Lett., 88(20), p. 204103; Lacour, S., et al., 2004, “Design and Performance of Thin Metal Film Interconnects for Skin-Like Electronic Circuits,” IEEE Electron Device Lett., 25(4), pp. 179–181; and Maghribi, M., et al., 2005, “Stretchable Micro-Electrode Array,” International IEEE-EMBS Conference on Microtechnologies in Medicine and Biology, pp. 80–83.). Although stretchable electronic devices are a relatively new area for the semiconductor/electronics industries, recent market research indicates that the market could be worth more than $900 million by 2023 (PR Newswire, 2015, “Stretchable Electronics Market Worth $911.37 Million by 2023,” PR Newswire, Albuquerque, NM.). This paper investigates mechanical testing methods designed to test the stretching capabilities of potential products across the electronics industry to help quantify and understand the mechanical integrity, response, and the reliability of these devices. Typically, the devices consist of stiff modules connected by stretchable traces (Loher, T., et al., 2006, “Stretchable Electronic Systems,” Electronics Packaging Technology Conference (EPTC '06), pp. 271–276.). They require electrical and mechanical connectivity between the modules to function. In some cases, these devices will be subject to biaxial and/or cyclic mechanical strain, especially for wearable applications. The ability to replicate these mechanical strains and understand their effect on the function of the devices is critical to meet performance, process, and reliability requirements. In this paper, methods for simulating biaxial and out-of-plane strains similar to what may occur in a wearable device on the human body are proposed. Electrical and/or optical monitoring (among other methods) can be used to determine cycles to failure depending on expected failure modes. Failure modes can include trace damage in stretchable regions, trace damage in functional component regions, or bulk stretchable material damage, among others. Three different methods of applying mechanical strain are described, including a stretchable air bladder method, membrane test method, and lateral expansion method.
Configurable Protocol Engine for Runtime-Configurable Communication Subsystems on Multiprocessor SoC (2006)

This paper presents a configurable protocol engine (CPE) to implement runtime-configurable communication subsystems, which are able to adapt their protocol stacks to varying service requirements. The communication subsystems with CPE are designed and implemented using a UML-based design methodology and automated design flow. CPE has been applied to implementing wireless protocol stacks on multiprocessor system-on-chip (SoC) platforms. As a design case study, we present the implementation of a WSN-to-WLAN bridge on a multiprocessor SoC on FPGA. Experiences with CPE proved its feasibility in rapid implementation of communication subsystems with very decent performance
Development Progress of a 70% Efficient Hybrid SOFC-I.C. Engine Hybrid System for Stationary Applications up to 1 MW (2023)

Flexible and dispatchable, high-efficiency power generation supplied with carbon-neutral renewable fuels is needed to help enable defossilization of the electric grid. Pressurized, hybrid SOFC systems fueled with hydrogen, biogas, or renewable natural gas can generate clean power at ultra-high efficiency. In this summary, we provide an update on the development progress of a full-scale, hybrid system that targets low cost (<1000 $/kW) and ultra-high efficiency (70%-LHV) distributed power generation for applications up to 1 MW. The system features pressurized, metal-supported SOFC technology from Ceres Power which is integrated with a modified diesel engine which converts the residual chemical exergy in the anode tail-gas from the SOFC to drive auxiliaries and produce net additional power. Updates on critical hardware advancements around pressurized multi-stack, 30 kW fuel cell modules, low-speed high efficiency rotating equipment, and ultra-high efficiency power electronics are provided. A techno-economic outlook for such power generation systems in various stationary applications.
Nanoparticle-Assisted Scanning Focusing X-Ray Therapy with Needle Beam X Rays (2016)

In this work, we show a new therapeutic approach using 40–120 keV X rays to deliver a radiation dose at the isocenter located many centimeters below the skin surface several hundred times greater than at the skin and how this dose enhancement can be augmented with nanomaterials to create several thousand-fold total dose enhancement effect. This novel approach employs a needle X-ray beam directed at the isocenter centimeters deep in the body while continuously scanning the beam to cover a large solid angle without overlapping at the skin. A Monte Carlo method was developed to simulate an X-ray dose delivered to the isocenter filled with X-ray absorbing and catalytic nanoparticles in a water phantom. An experimental apparatus consisting of a moving plastic phantom irradiated with a stationary 1 mm needle X-ray beam was built to test the theoretical predictions. X-ray films were used to characterize the dose profiles of the scanning X-ray apparatus. Through this work, it was determined that the X-ray dose delivered to the isocenter in a treatment voxel (t-voxel) underneath a 5 cm deep high-density polyethylene (HDPE) phantom was 295 ± 48 times greater than the surface dose. This measured value was in good agreement with the theoretical predicted value of 339-fold. Adding X-ray-absorbing nanoparticles, catalytic nanoparticles or both into the t-voxel can further augment the dose enhancement. For example, we predicted that adding 1 weight percentage (wp) of gold into water could increase the effective dose delivered to the target by onefold. Dose enhancement using 1 mm X-ray beam could reach about 1,600-fold in the t-voxel when 7.5 wp of 88 nm diameter silica-covered gold nanoparticles were added, which we showed in a previously published study can create a dose enhancement of 5.5 ± 0.46-fold without scanning focusing enhancement. Based on the experimental data from that study, mixing 0.02 wp 2.5 nm diameter small tetrakis hydroxymethyl phosphonium chloride (THPC)-coated gold nanoparticles, which created chemical enhancement, with the 7.5 wp 88 nm diameter silica-covered gold nanoparticles, could further double the dose effect at the isocenter, resulting in a total dose enhancement effect of 3,245 ± 600-fold. These results indicate that the three-dimensional scanning focusing method using a needle beam of X rays can deliver a dose several hundred times greater at a deeply embeded target located well below the skin surface. Total dose effect can be enhanced to several thousand-fold by augmenting the scanning focusing effect with X-ray-absorbing and catalytic nanoparticles in the t-voxel.
Vector Kirchhoff migration of first‐order downgoing multiples from VSP data (2007)

Migrating Vertical Seismic Profile (VSP) downgoing multiple arrivals can provide a much wider image zone than does the conventional migration of primary reflections. Many methods have been developed to migrate the downgoing multiples. Although most VSP data is recorded using three component downhole receivers, most all of the developed methods migrate only a single scalar component of the multiples. We present a new methodology to perform three‐component (3C) vector migration for the 1st order free‐surface related multiples which are usually the dominant wavemode in VSP data. We first vertically up‐extend the velocity model above, and symmetric about, the free surface. The borehole receivers are then projected to their virtual positions above the free surface. We can therefore treat the 1st order free‐surface related multiples as primary reflections recorded by the virtual receivers. This concept is usually referred to as the free‐surface mirror symmetry principle. Then, using the up‐extended velocity model and the virtual receiver positions, we perform a vector summation of the Kirchhoff pre‐stack depth migration for all three downhole receiver components (x, y, z) for the 1st order free‐surface related multiples. Test results for both synthetic modeling and field data suggest that our method can accurately produce a much wider seismic image zone than conventional VSP migration which uses only primary upcoming reflections. The image quality is also enhanced by the migration of all three vector components instead of a single scalar component as is done by conventional VSP migration methods.
Tissue-engineered models of human tumors for cancer research (2015)

While tissue models are just emerging as a new tool for cancer drug discovery, they are already demonstrating potential for recapitulating, in vitro, the native behavior of human tumors. Still, numerous challenges need to be addressed before we can have platforms with a predictive power appropriate for the pharmaceutical industry. Some of the key needs include the incorporation of the vascular compartment, immune system components, and mechanical signals that regulate tumor development and function.
Digitally controlled integrated DC-DC converters with fast transient response (2009)

Fast load transient response and high power conversion efficiency in DC-DC converters have conflicting requirements on the size of the inductor. In this paper, an integrated point-of-load (POL) DC-DC converter with an smaller auxiliary output stage added in parallel to the main output switching stage to help reduce the output voltage deviation during load transient is investigated. The transistor sizing of the auxiliary output stage in relation to the main output stage is studied through analysis and simulation of a 12 V to 1 V, 3 W, buck converter. The auxiliary output stage performs well with transistors occupying as little as 5% the area of the main output stage.
Dome speaker with cut-out portions in the voice coil bobbin (1986)

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Synthesis and behavior of bulk iron nitride soft magnets via high-pressure spark plasma sintering (2021)

Abstract In this study, dense bulk iron nitrides (Fe x N) were synthesized for the first time ever using spark plasma sintering (SPS) of Fe x N powders. The Fe 4 N phase of iron nitride in particular has significant potential to serve as a new soft magnetic material in both transformer and inductor cores and electrical machines. The density of SPSed Fe x N increased with SPS temperature and pressure. The microstructure of the consolidated bulk Fe x N was characterized with X-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM), and superconducting quantum interference device (SQUID) magnetometry. XRD revealed a primary phase of Fe 4 N with secondary phases of Fe 3 N and metallic iron. Finite element analysis (FEA) was also applied to investigate and explain localized heating and temperature distribution during SPS. The effects of processing on interface bonding formation and phase evolution were investigated and discussed in detail to provide insight into fundamental phenomena and microstructural evolution in SPSed Fe x N. Graphic abstract
Elliptical-core two mode fiber sensors and devices incorporating photoinduced refractive index gratings (1991)

Results of experiments performed using germanium-doped, elliptical core, two-mode optical fibers whose sensitivity to strain was spatially varied through the use of chirped, refractive-index gratings permanently induced into the core using Argon-ion laser light are presented. This type of distributed sensor falls into the class of eighted-fiber sensors which, through a variety of means, weight the strain sensitivity of a fiber according to a specified spatial profile. We describe results of a weighted-fiber vibration mode filter which successfully enhances the particular vibration mode whose spatial profile corresponds to the profile of the grating chirp. We report on the high temperature survivability of such grating-based sensors and discuss the possibility of multiplexing more than one sensor within a single fiber.
Efficient and Stable Solid‐State Dye‐Sensitized Solar Cells Based on a High‐Molar‐Extinction‐Coefficient Sensitizer (2009)

The high-molar-extinction-coefficient heteroleptic ruthenium dye, cis-Ru (4,4'-bis(5-octylthieno[3,2-b] thiophen-2-yl)-2,2'-bipyridine) (4,4'-dicarboxyl-2,2'-bipyridine) (NCS)(2), exhibits an AM 1.5 solar (100 mW cm(-2))-to-electric power-conversion efficiency of 4.6% in a solid-state dye-sensitized solar cell (SSDSC) with 2,2', 7,7'-tetrakis-(N,N-di-p-methoxyphenylamine)9,9'-spirobifluorene (spiro-MeOTAD) as the organic hole-transporting material. These SSDSC devices exhibit good durability during accelerated tests under visible-light soaking for 1000 h at 60 degrees C. This demonstration elucidates a class of photovoltaic devices with potential for stable and low-cost power generation. The electron recombination dynamics and charge collection that take place at the dye-sensitized heterojunction are studied by means of impedance and transient photovoltage decay techniques.
Synergistic Effects of Antioxidants on the Oxidative Stability of Soybean Oil‐ and Poultry Fat‐Based Biodiesel (2009)

Abstract Biodiesel is an alternative fuel composed of saturated and unsaturated methyl ester fatty acids that is very prone to oxidation attack. Exposure to air, heat, light, and metallic contaminants can lead to autoxidation, and the degradation of fuel properties such as kinematic viscosity and total acid number. This study examines the effectiveness of blends of primary antioxidants from combinations of butylated hydroxyanisole (BHA), propyl gallate (PG), pyrogallol (PY) and tert ‐butyl hydroquinone (TBHQ) to increase oxidative stability. Results indicate that binary antioxidant formulations: TBHQ:BHA, TBHQ:PG and TBHQ:PY were most effective at 2:1, 1:1, 2:1 weight ratio, respectively in both distilled soybean oil‐ (DSBO) and distilled poultry fat‐ (DPF) based biodiesel. Antioxidant activity increased as the loadings were increased. The synergisms of the antioxidant pairs were different with different biodiesel types, suggesting a dependence on the fatty acid methyl ester (FAME) composition. The best synergistic effect was observed with the TBHQ:BHA blends while the best stabilization factors (SF) were achieved by using the TBHQ:PY blends. Quantification of antioxidant content in stored biodiesel with TBHQ:PY blend demonstrates that the main factor of synergy is the regeneration of PY by TBHQ.
<i>Chlamydia</i> Protease-like Activity Factor (CPAF): Characterization of Proteolysis Activity in Vitro and Development of a Nanomolar Affinity CPAF Zymogen-Derived Inhibitor (2011)

During infection of epithelial cells, the obligate intracellular pathogen Chlamydia trachomatis secretes the serine protease Chlamydia protease-like activity factor (CPAF) into the host cytosol to regulate a range of host cellular processes through targeted proteolysis. Here we report the development of an in vitro assay for the enzyme and the discovery of a cell-permeable CPAF zymogen-based peptide inhibitor with nanomolar inhibitory affinity. Treating C. trachomatis-infected HeLa cells with this inhibitor prevented CPAF cleavage of the intermediate filament vimentin and led to the loss of vimentin cage surrounding the intracellular vacuole. Because Chlamydia is a genetically intractable organism, this inhibitor may serve as a tool for understanding the role of CPAF in pathogenesis.
Engineering an anti-CD52 antibody for enhanced deamidation stability. (2019)

Deamidation evaluation and mitigation is an important aspect of therapeutic antibody developability assessment. We investigated the structure and function of the Asn-Gly deamidation in a human anti-CD52 IgG1 antibody light chain complementarity-determining region 1, and risk mitigation through protein engineering. Antigen binding affinity was found to decrease about 400-fold when Asn<sup>33</sup> was replaced with an Asp residue to mimic the deamidation product, suggesting significant impacts on antibody function. Other variants made at Asn<sup>33</sup> (N33H, N33Q, N33H, N33R) were also found to result in significant loss of antigen binding affinity. The co-crystal structure of the antigen-binding fragment bound to a CD52 peptide mimetic was solved at 2.2Å (PDB code 6OBD), which revealed that Asn<sup>33</sup> directly interacts with the CD52 phosphate group via a hydrogen bond. Gly<sup>34</sup>, but sits away from the binding interface, rendering it more amendable to mutagenesis without affecting affinity. Saturation mutants at Gly<sup>34</sup> were prepared and subjected to forced deamidation by incubation at elevated pH and temperature. Three mutants (G34R, G34K and G34Q) showed increased resistance to deamidation by LC-MS peptide mapping, while maintaining high binding affinity to CD52 antigen measured by Biacore. A complement -dependent cytotoxicity assay indicated that these mutants function by triggering antibody effector function. This study illustrates the importance of structure-based design and extensive mutagenesis to mitigate antibody developability issues.
Improved stabilization of a 13 µm femtosecond optical frequency comb by use of a spectrally tailored continuum from a nonlinear fiber grating (2006)

We report significant enhancement (+24 dB) of the optical beat note between a 657 nm cw laser and the second-harmonic generation of the tailored continuum at 1314 nm generated with a femtosecond Cr:forsterite laser and a nonlinear fiber Bragg grating. The same continuum is used to stabilize the carrier-envelope offset frequency of the Cr:forsterite femtosecond laser and permits improved optical stabilization of the frequency comb from 1.0 to 2.2 microm. Using a common optical reference at 657 nm, a relative fractional frequency instability of 2.0 x 10(-15) is achieved between the repetition rates of Cr:forsterite and Ti:sapphire laser systems in 10 s averaging time. The fractional frequency offset between the optically stabilized frequency combs of the Cr:forsterite and Ti:sapphire lasers is +/-(0.024 +/- 6.1) x 10(-17).
Continuous-wave, fourfold upconversion laser (1993)

We report a new Er3+:LiYF4 cryogenic upconversion laser pumped by a fourfold upconversion process. Excitation at 1.5 μm results in laser emission at 701.5 nm on a transition with an upper state at nearly four times the pump photon energy. Mechanisms and the concept of cooperative upconversion enhancement are examined.
Characterization of microRNA in bovine in vitro culture media associated with embryo quality and development (2015)

Dairy cattle fertility has declined over time due to factors including reduced fertilization and early embryonic loss. To counter fertility problems and better study preimplantation embryonic development, in vitro production systems have been developed. These systems largely assess embryos based on their morphology, which is not a strong indicator of developmental potential. Currently, no biomarkers can be used to noninvasively survey an embryo's potential in terms of its development and ability to establish a pregnancy. Thus, the objective of this study was to characterize and identify microRNA (miRNA) in culture media of embryos of differing developmental competence for future development as noninvasive biomarkers of embryo quality. The MiRNA sequencing of media conditioned by blastocyst and degenerate (those that failed to develop from the morula to blastocyst stage) embryos, revealed 11 differentially expressed miRNA; all were higher in concentration in degenerate conditioned media. Differential expression of mature microRNA (miR)-24, miR-191, and miR-148a was further validated using quantitative real-time PCR. Functional analysis of miR-24 revealed that addition of a mimic miRNA to culture media of morulae embryos resulted in a 27.3% decrease in development to the blastocyst stage. Furthermore, expression of miR-24 was 44.29-fold higher in blastocysts cultured with a miR-24 mimic compared with control blastocysts. Interestingly, the expression of CDKN1b, a target gene of miR-24 was repressed in embryos grown in the presence of the miRNA mimic. Mimic supplementation experiments suggest that miRNA are taken up by the embryo and that extracellular miRNA affect embryonic development. Overall, identification of a rich extracellular milieu in conditioned media sets the framework for future studies to determine the long-term predictive ability of embryo-based miRNA biomarkers on pregnancy outcome.