gebhart/patrepeval huggingface dataset:
Deletion of African swine fever virus interferon inhibitors from the genome of a virulent isolate reduces virulence in domestic pigs and induces a protective response (2016)

African swine fever virus (ASFV) encodes multiple copies of MGF360 and MGF530/505 gene families. These genes have been implicated in the modulation of the type I interferon (IFN) response. We investigated the effect of modulating the IFN response on virus attenuation and induction of protective immunity by deleting genes MGF360 (MGF360-10L, 11L, 12L, 13L, 14L) and MGF530/505 (MGF530/505-1R, 2R and 3R) and interrupting genes (MGF360-9L and MGF530/505-4R) in the genome of the virulent ASFV isolate Benin 97/1. Replication of this deletion mutant, BeninΔMGF, in porcine macrophages in vitro was similar to that of the parental virulent virus Benin 97/1 and the natural attenuated isolate OURT88/3, which has a similar deletion of MGF360 and 530/505 genes. Levels of IFN-β mRNA in macrophages infected with virulent Benin 97/1 isolate were barely detectable but high levels were detected in macrophages infected with OURT88/3 and intermediate levels in macrophages infected with BeninΔMGF. The data confirms that these MGF360 and MGF530/505 genes have roles in suppressing induction of type I IFN. Immunisation and boost of pigs with BeninΔMGF showed that the virus was attenuated and all pigs (5/5) were protected against challenge with a lethal dose of virulent Benin 97/1. A short transient fever was observed at day 5 or 6 post-immunisation but no other clinical signs. Following immunisation and boost with the OURT88/3 isolate 3 of 4 pigs were protected against challenge. Differences were observed in the cellular and antibody responses in pigs immunised with BeninΔMGF compared to OURT88/3. Deletion of IFN modulators is a promising route for construction of rationally attenuated ASFV candidate vaccine strains.
Reliable Physical Unclonable Functions Using Data Retention Voltage of SRAM Cells (2015)

Physical unclonable functions (PUFs) are circuits that produce outputs determined by random physical variations from fabrication. The PUF studied in this paper utilizes the variation sensitivity of static random access memory (SRAM) data retention voltage (DRV), the minimum voltage at which each cell can retain state. Prior work shows that DRV can uniquely identify circuit instances with 28% greater success than SRAM power-up states that are used in PUFs [1]. However, DRV is highly sensitive to temperature, and until now this makes it unreliable and unsuitable for use in a PUF. In this paper, we enable DRV PUFs by proposing a DRV-based hash function that is insensitive to temperature. The new hash function, denoted DRV-based hashing (DH), is reliable across temperatures because it utilizes the temperature-insensitive ordering of DRVs across cells, instead of using the DRVs in absolute terms. To evaluate the security and performance of the DRV PUF, we use DRV measurements from commercially available SRAM chips, and use data from a novel DRV prediction algorithm. The prediction algorithm uses machine learning for fast and accurate simulation-free estimation of any cell's DRV, and the prediction error in comparison to circuit simulation has a standard deviation of 0.35 mV. We demonstrate the DRV PUF using two applications-secret key generation and identification. In secret key generation, we introduce a new circuit-level reliability knob as an alternative to error correcting codes. In the identification application, our approach is compared to prior work and shown to result in a smaller false-positive identification rate for any desired true-positive identification rate.
Peptides for Therapy and Diagnosis of Alzheimer's Disease (2012)

Alzheimer's disease (AD) is a progressive neurodegenerative disorder with devastating effects. The greatest risk factor to develop AD is age. Today, only symptomatic therapies are available. Additionally, AD can be diagnosed with certainty only post mortem, whereas the diagnosis "probable AD" can be established earliest when severe clinical symptoms appear. Specific neuropathological changes like neurofibrillary tangles and amyloid plaques define AD. Amyloid plaques are mainly composed of the amyloid-βpeptide (Aβ). Several lines of evidence suggest that the progressive concentration and subsequent aggregation and accumulation of Aβ play a fundamental role in the disease progress. Therefore, substances which bind to Aβ and influence aggregation thereof are of great interest. An enormous number of organic substances for therapeutic purposes are described. This review focuses on peptides developed for diagnosis and therapy of AD and discusses the pre- and disadvantages of peptide drugs.
A Mutation in PMP2 Causes Dominant Demyelinating Charcot-Marie-Tooth Neuropathy (2016)

Charcot-Marie-Tooth disease (CMT) is a heterogeneous group of peripheral neuropathies with diverse genetic causes. In this study, we identified p.I43N mutation in PMP2 from a family exhibiting autosomal dominant demyelinating CMT neuropathy by whole exome sequencing and characterized the clinical features. The age at onset was the first to second decades and muscle atrophy started in the distal portion of the leg. Predominant fatty replacement in the anterior and lateral compartment was similar to that in CMT1A caused by PMP22 duplication. Sural nerve biopsy showed onion bulbs and degenerating fibers with various myelin abnormalities. The relevance of PMP2 mutation as a genetic cause of dominant CMT1 was assessed using transgenic mouse models. Transgenic mice expressing wild type or mutant (p.I43N) PMP2 exhibited abnormal motor function. Electrophysiological data revealed that both mice had reduced motor nerve conduction velocities (MNCV). Electron microscopy revealed that demyelinating fibers and internodal lengths were shortened in both transgenic mice. These data imply that overexpression of wild type as well as mutant PMP2 also causes the CMT1 phenotype, which has been documented in the PMP22. This report might expand the genetic and clinical features of CMT and a further mechanism study will enhance our understanding of PMP2-associated peripheral neuropathy.
Extending endurance of NROM memories to over 10 million program/erase cycles (2006)

We report on NROM (nitride read only) memory with enhanced endurance/retention. A novel “refresh” is introduced into the cycling algorithm to exclude parasitic electron trapping in the memory transistor. Negative gate pulses are applied when the drain voltage in the erase procedure reaches the threshold value. The memory stack is optimized to allow injection of holes from the substrate through the bottom oxide (BOX). More than 10 million program/erase (P/E) cycles with excellent retention are easily achieved.
Enhanced hematopoietic activity of a human granulocyte/macrophage colony-stimulating factor-interleukin 3 fusion protein. (1991)

Granulocyte/macrophage colony-stimulating factor-interleukin 3 (GM-CSF-IL-3) fusion proteins were generated by construction of a plasmid in which the coding regions of human GM-CSF and IL-3 cDNAs were connected by a synthetic linker sequence followed by subsequent expression in yeast. Both GM-CSF-IL-3 and IL-3-GM-CSF fusion proteins were purified to homogeneity and shown to bind to cell-surface receptors through either their GM-CSF or IL-3 domains. The fusion proteins exhibited enhanced receptor affinity, proliferative activity, and hematopoietic colony-stimulating activity compared with either IL-3 and/or GM-CSF alone. This suggests that GM-CSF-IL-3 fusion proteins may hold future promise as therapeutic agents.
Immunochemical Studies of Infectious Mononucleosis (1977)

Abstract. The major sialoglycopeptide released from bovine erythrocytes by papain has been purified and characterized. The glycopeptide contains 82% by weight carbohydrate in molar ratios of galactose ‐5. 5 :N‐acetylglucosamine ‐3. 6 :sialic acid ‐2. 6 :N‐acetylgalactosamine ‐1.0. The carbohydrate and amino acid composition is quite different from the glycoprotein extracted from bovine erythrocyte stroma with hot 75% ethanol. The glycopeptide is devoid of reactivity with Paul‐Bunnell heterophile antibody of infectious mononucleosis ‐ an activity expressed to high degree on the bovine erythrocyte and associated with glycoprotein. The glycopeptide does react, however, with another antibody found in infectious mononucleosis as well as most normal human sera tested.
Abstract 15100: A Decrease in Mitochondrial, but Not Cytosolic, Iron Protects Against Cardiac Ischemia-Reperfusion Damage Through a Reduction in ROS (2015)

Introduction: Iron can catalyze the formation of reactive oxygen species (ROS) and promote tissue damage. While some studies suggested benefits with iron chelation therapy in ischemic heart disease (IHD), several others failed to show any benefits. Mitochondria are a major site of iron utilization and ROS production, and mitochondrial iron accumulation has been associated with increased oxidative stress. We therefore hypothesized that mitochondrial iron plays a causative role in ischemia/reperfusion (I/R) damage, and a decrease in mitochondrial iron (as opposed to cytoplasmic iron) would be sufficient to protect against I/R injury. Results: We observed an increase in cardiac mitochondrial iron in mice after I/R injury. Using two iron chelators with distinct mitochondrial permeability, i.e., 2,2’-bipyridyl (BPD, a mitochondria-accessible iron chelator) and deferoxamine (DFO, an iron chelator that does not modulate mitochondrial iron), we demonstrated that mice pretreated with BPD but not DFO were protected against I/R injury. Similar results were obtained in vitro . Since these two iron chelators also modulate iron in other subcellular compartments, we used transgenic (TG) mice with cardiomyocyte-specific overexpression of the mitochondrial iron export protein ATP-binding cassette (ABC)-B8 to confirm that modulation of mitochondrial iron alone is sufficient to confer protection. ABCB8 TG mice had significantly lower mitochondrial iron (but normal cytosolic iron) in the heart compared to nontransgenic (NTG) littermates at baseline, but exhibited normal cardiac function. After I/R, ABCB8 TG mice displayed significantly less apoptosis and lower levels of markers of ROS and better preserved cardiac function than NTG littermates, suggesting that a reduction in mitochondrial iron protects against I/R injury, most likely through a reduction in ROS. Conclusions: Our findings demonstrate that selective reduction in mitochondrial iron is sufficient to protect against I/R injury. Thus, targeting mitochondrial iron with selective iron chelators may provide a novel approach for the treatment of IHD.
Synthesis of (S,S)- and (R,R)-2-alkyl-2,5-diazabicyclo[2.2.1]heptanes (1990)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSynthesis of (S,S)- and (R,R)-2-alkyl-2,5-diazabicyclo[2.2.1]heptanesTamim F. Braish and Darrell E. FoxCite this: J. Org. Chem. 1990, 55, 5, 1684–1687Publication Date (Print):March 1, 1990Publication History Published online1 May 2002Published inissue 1 March 1990https://pubs.acs.org/doi/10.1021/jo00292a054https://doi.org/10.1021/jo00292a054research-articleACS PublicationsRequest reuse permissionsArticle Views990Altmetric-Citations36LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Mesoporous Metal Nitride Materials Prepared from Bulk Oxides (2012)

The preparation of metal nitride materials structured on the nano or mesoscale is challenging due to the need for high sintering temperatures and/or long reaction times. Here, we present a new and simple process for preparing mesoporous transition metal nitrides without the use of nanopatterning or other templating. Mesoporous VN , TiN , CrN , Ta 3 N 5 , TaN , NbN , WN , MoN , and Mo 2 N are obtained by the ammonolysis of bulk ternary oxides containing Zn . The products were characterized by Rietveld refinement of powder X‐ray diffraction ( PXRD ) patterns, scanning electron microscopy ( SEM ), and nitrogen adsorption/desorption analysis. Our results demonstrate that the pore sizes of these materials range from 10 to 50 nm. By varying the precursor stoichiometry, the transition metal, and processing conditions, many different mesoporous morphologies are obtained. These materials show high surface area and good electrical conductivity.
Effects of Extracellular pH on the Metabolic Pathways in Sulfur-Deprived, H2-Producing Chlamydomonas reinhardtii Cultures (2003)

Sustained photoproduction of H(2) by the green alga, Chlamydomonas reinhardtii, can be obtained by incubating cells in sulfur-deprived medium [Ghirardi et al. (2000b) Trends Biotechnol. 18: 506; Melis et al. (2000) Plant Physiol. 122: 127]. The current work focuses on (a) the effects of different initial extracellular pHs on the inactivation of photosystem II (PSII) and O(2)-sensitive H(2)-production activity in sulfur-deprived algal cells and (b) the relationships among H(2)-production, photosynthetic, aerobic and anaerobic metabolisms under different pH regimens. The maximum rate and yield of H(2) production occur when the pH at the start of the sulfur deprivation period is 7.7 and decrease when the initial pH is lowered to 6.5 or increased to 8.2. The pH profile of hydrogen photoproduction correlates with that of the residual PSII activity (optimum pH 7.3-7.9), but not with the pH profiles of photosynthetic electron transport through photosystem I or of starch and protein degradation. In vitro hydrogenase activity over this pH range is much higher than the actual in situ rates of H(2) production, indicating that hydrogenase activity per se is not limiting. Starch and protein catabolisms generate formate, acetate and ethanol; contribute some reductant for H(2) photoproduction, as indicated by 3-(3,4-dichlorophenyl)-1,1-dimethylurea and 2,5-dibromo-6-isopropyl-3-methyl-1,4-benzoquinone inhibition results; and are the primary sources of reductant for respiratory processes that remove photosynthetically generated O(2). Carbon balances demonstrate that alternative metabolic pathways predominate at different pHs, and these depend on whether residual photosynthetic activity is present or not.
Communications and High-Precision Positioning (CHP2): Hardware Architecture, Implementation, and Validation (2023)

Spectral congestion and modern consumer applications motivate radio technologies that efficiently cooperate with nearby users and provide several services simultaneously. We designed and implemented a joint positioning-communications system that simultaneously enables network communications, timing synchronization, and localization to a variety of airborne and ground-based platforms. This Communications and High-Precision Positioning (CHP2) system simultaneously performs communications and precise ranging (<10 cm) with a narrow band waveform (10 MHz) at a carrier frequency of 915 MHz (US ISM) or 783 MHz (EU Licensed). The ranging capability may be extended to estimate the relative position and orientation by leveraging the spatial diversity of the multiple-input, multiple-output (MIMO) platforms. CHP2 also digitally synchronizes distributed platforms with sub-nanosecond precision without support from external systems (GNSS, GPS, etc.). This performance is enabled by leveraging precise time-of-arrival (ToA) estimation techniques, a network synchronization algorithm, and the intrinsic cooperation in the joint processing chain that executes these tasks simultaneously. In this manuscript, we describe the CHP2 system architecture, hardware implementation, and in-lab and over-the-air experimental validation.
Optimization criteria for coplanar-grid detectors (1999)

The coplanar-grid charge-sensing technique is a powerful method to achieve excellent spectroscopic performance with large-volume, CdZnTe-based, gamma-ray detectors despite the poor charge transport characteristics of the CdZnTe material. Critical to the success of the technique are the charge induction characteristics of the sensing-grid electrodes as governed by the detector geometry and the grid design. In this paper we demonstrate through numerical calculations of the detector response that the criteria for optimizing the grid design depend on the particular method in which the coplanar-grid technique is implemented. We present the fundamental design criteria in terms of the desired charge induction on the grid electrodes for the commonly used coplanar-grid implementations.
Electrical osteogenesis by low direct current (1983)

Abstract A constant direct current cathode was employed in the medullary canal of the rabbit tibia to investigate electrical osteogenesis at low current levels. Currents of 0.015 or 0.075 μA were delivered to the bone and the biological response was compared with contralateral controls receiving 20 μA. This investigation was performed to determine if electrical osteogenesis occurs at current levels below the previously studied range of 1–100 μA with stainless steel electrodes. New bone formed by 0.015 μA cathodes was statistically comparable with that found around inactive cathodes from an earlier pertinent study. The osteogenic response to 0.075 μA cathodes was significantly elevated above that to inactive ones, thus substantiating electrical osteogenesis for currents below 1 μA. However, it is evident that this does not demonstrate a further stimulatory range but that currents near 0.075 μA probably approach the lower significant limit for electrically induced bone growth with stainless steel electrodes.
A low-power memristive neuromorphic circuit utilizing a global/local training mechanism (2011)

As conventional CMOS technology approaches fundamental scaling limits novel nanotechnologies offer great promise for VLSI integration at nanometer scales. The memristor, or memory resistor, is a novel nanoelectronic device that holds great promise for continued scaling for emerging applications. Memristor behavior is very similar to that of the synapses necessary for realizing a neural network. In this research, we have considered circuits that leverage memristance in the realization of an artificial synapse that can be used to implement neuromorphic computing hardware. A charge sharing based neural network is described which consists of a hybrid of conventional CMOS technology and novel memristors. Results demonstrate that the circuit can be implemented with energy consumption on the order of tens of femto-joules. Furthermore, a training circuit is presented for implementing supervised learning in hardware with low area overhead.
Synthesis and evaluation of tylosin-related macrolides modified at the aldehyde function: a new series of orally effective antibiotics (1988)

Modification of the aldehyde group in tylosin and related macrolide antibiotics dramatically enhanced the oral efficacy of the derivatives against experimental infections caused by susceptible bacteria in laboratory animals. A large number and wide variety of aldehyde-modified macrolide derivatives were prepared, utilizing the Mitsunobu reaction and other chemical transformations. Evaluation of in vitro and in vivo antimicrobial activity indicated that derivatives of demycarosyltylosin (desmycosin) combined the broadest spectrum of antimicrobial activity with the best efficacy and bioavailability after oral administration.
MODTRAN3: An update and recent validations against airborne high resolution interferometer measurements (1995)

MODTRAN, the Moderate Resolution Atmospheric Radiance and Transmittance Model, encompasses all the capabilities of LOWTRAN 7, the widely used 20 cm(exp -1) resolution radiance code, but incorporates a much more sensitive molecular band model with 2 cm(exp -1) resolution. MODTRAN contains many important elements that other band model based radiative transfer codes do not incorporate. It shares with FASCODE: spherical geometry, single and multiple scattering default atmospheric profile descriptors (gases, aerosols, clouds, fogs, and rain), and molecular continua (H2O, CO2, O3, O2, N2). In addition, it can calculate the solar/lunar direct and scattered radiation. MODTRAN3 was released to the general public in November 1994. It has several important features that the previous version, MODTRAN2, does not have. Chloro-fluorocarbon (CFC) and related heavy molecules (whose spectroscopic properties first appear on the HITRAN92 data base as temperature-dependent cross sections) have been incorporated into pseudo-band models, with provision for using both default and user supplied profiles. The addition of SO2 and O2 in the UV, along with upgraded ozone Chappuis bands in the visible is also part of MODTRAN3. An improved multiple scattering algorithm, the DIScrete Ordinate Radiative Transfer (DISORT) has also been incorporated into MODTRAN3. MODTRAN is very fast: simple timing runs of MODTRAN3 vs. FASCOD3 show an improvement of more than a factor of 100 for a typical 500 cm(exp -1) spectral interval and comparable vertical layering. Speed is an important consideration in heating/cooling rates calculations, where a large number of radiative transfer calculations are needed. The MODTRAN3 used in this study is based on HITRAN92, but as mentioned, above, it will be upgraded to HITRAN94 upon its release at the end of 1994. MODTRAN has been adopted by: some researchers in the AVIRIS program as one radiative transfer code to derive surface reflectance from AVIRIS measurements. The accuracy of the code is very important because any errors in the radiative transfer calculation will directly translate into errors in the derived surface reflectance. In this paper, the new solar irradiance calculated by Kurucz, which is adopted in MODTRAN3, will be presented. Recent validations of MODTRAN3 with airborne high resolution interferometer measurements over ocean will be discussed. Good agreeement between model calculations and measurements was achieved.