gebhart/patrepeval huggingface dataset:
Restoration of the Activity of Active-Site Mutants of the Hyperthermophilic β-Glycosidase from <i>Sulfolobus solfataricus</i>:  Dependence of the Mechanism on the Action of External Nucleophiles (1998)

The beta-glycosidase from the hyperthermophilic Archaeon Sulfolobus solfataricus hydrolyzes beta-glycosides following a retaining mechanism based upon the action of two amino acids: Glu387, which acts as the nucleophile of the reaction, and Glu206, which acts as the general acid/base catalyst. The activities of inactive mutants of the catalytic nucleophile Glu387Ala/Gly were restored by externally added nucleophiles. Sodium azide and sodium formate were used as external nucleophiles and the products of their reaction were characterized. Glu387Ala/Gly mutants were reactivated with 2, 4-DNP-beta-Glc substrate and the Glu387Gly mutant showed recovered activity, with the same nucleophiles, also on 2-NP-beta-Glc. The reaction catalyzed by the Glu387Gly mutant proceeded differently depending on the type of externally added nucleophile. Sodium azide restored the catalytic activity of the mutant by attacking the alpha-side of the anomeric carbon of the substrates, thereby yielding an inverting glycosidase. Sodium formate promoted the opposite behavior (retaining) in the mutant, producing 3-O-beta-linked disaccharide derivative of the substrates. A possible role of sodium formate as a biomimicking agent in replacing the natural nucleophile Glu387 is also discussed.
Potential of fungi isolated from the dumping sites mangrove rhizosphere soil to degrade polythene (2019)

Polythene is the most widely used plastic around the globe. Among the total plastic waste generated, polythene contributes the maximum share (64%). Various strategies/methods are being utilized to deal with the increasing rate of plastic waste, but among all the methods, bioremediation is regarded as the ecofriendly and widely accepted method. In the current investigation, we have attempted to discover the elite polythene deteriorating fungi (isolated from the rhizosphere soil of Avicennia marina). From 12 different eco-geographical locations along the West Coast of India, total 109 fungal isolates were recorded. The polythene deteriorating fungi were screened at varied pH (3.5, 7 and 9.5) based on changes in weight and tensile strength of the treated polythene at ambient temperature with continuous shaking for 60 days. BAYF5 isolate (pH 7) results in maximum reduction in weight (58.51 ± 8.14) whereas PNPF15 (pH 3.5) recorded highest reduction in tensile strength (94.44 ± 2.40). Surprisingly, we have also reported weight gain, with highest percent weight gain (28.41 ± 6.99) with MANGF13 at pH 9.5. To test the reproducibility of the results, the elite polythene degrading fungal isolates based on weight loss and reduction in tensile strength were only used for repetition experiment and the results based on the reduction in tensile strength were found only reproducible. Polythene biodegradation was further confirmed using Scanning Electron Microscopy (SEM) and Fourier Transform Infrared Spectroscopy (FTIR) analysis. The most efficient polythene deteriorating fungal isolates were identified as Aspergillus terreus strain MANGF1/WL and Aspergillus sydowii strain PNPF15/TS using both morphological keys and molecular tools.
Improving glandular coverage during prostate biopsy using a long-core needle: technical performance of an end-cutting needle (2002)

When set at a 33-mm stroke length, the BioPince needle increases the mean core length by 30%, with less fragmentation than a standard 18 mm needle. However, it has a significant failure rate for capture (27% needle replacement rate), slightly greater morbidity (pain and possibly fever) and shows no advantage in capsular coverage. Therefore, there are shortcomings with this end-cutting needle when used at 33 mm core length.
Acoustic method of through-tubing cement bond evaluation based on Mie resonances (2018)

Without presence of tubing, cement bonds behind casing has proven able to be evaluated by acoustic methods such as sonic cement bond logging, the ultrasonic pulse-echo method, and the pitch-catch method. However, there is no reported acoustic method effective to estimating cement bonds through tubing. Through-tubing cement bond evaluation becomes a challenge because of the unwanted strong interference of tubing. Here, we propose a novel acoustic method for through-tubing cement bond evaluation based on low-frequency Mie resonances excited by cylindrical wavefronts. Physically, the phenomenal Mie and the companied anti-resonances can be explained by the coupling Duffing model. This model shows that the change of cement impedance can be characterized by the response change of Mie resonances. The amplitude of Mie resonances at low frequencies has an appreciable response even though there exists tubing. Then, the response is qualitatively captured by the change of the electrical input power fed to the cylindrical transducer, based on the principle of acoustic Purcell effect. Therefore, by measuring the electrical input power or terminal resistance, cement bonds can be evaluated through tubing. Last but not least, our proposed method has the capability of not only evaluating cement bonds but also estimating the quantity of casings and the eccentering of tubing based on the azimuthal profile of Mie resonances.
Abbott's fluorescence polarization immunoassay for cyclosporine and metabolites compared with the Sandoz "Sandimmune" RIA. (1988)

A new procedure for measuring cyclosporine in plasma has been introduced by Abbott Laboratories, involving their TDx instrumentation and fluorescence polarization immunoassay. Radioimmunoassay (RIA) and high-performance liquid chromatography are currently the conventional methods for measuring cyclosporine in plasma and whole blood. In an effort to find a method that will decrease the radioactive hazard, the reagent and supply cost, and the labor requirements associated with RIA procedures, we used specimens from transplantation patients to compare the Abbott assay with the Sandoz Sandimmune assay. We believe that the Abbott assay offers some advantages over the Sandimmune RIA procedure, providing a reliable but simpler and less hazardous technology.
Multifrequency electrical impedance imaging: preliminary<i>in vivo</i>experience in breast (2000)

We have deployed a recently completed spectroscopic electrical impedance tomography (EITS) imaging system in a small series of women (13 participants accrued to date) in order to investigate the feasibility of delivering EITS breast examinations on a routine basis. Hardware is driven with sinusoidally varying spatial patterns of applied voltage delivered to 16 electrodes over the 10 kHz to 1 MHz spectral range using a radially translating interface which couples the electrodes to the breast through direct contact. Imaging examinations have consisted of the acquisition of multi-channel measurements at ten frequencies on both breasts. Participants lie prone on an examination table with the breast to be imaged pendant in the electrode array that is located below the table. Examinations were comfortable and easy to deliver (about 10 minutes per breast including electrode-positioning time). Although localized near-surface electrode artefacts are evident in the acquired images, several findings have emerged. Permittivity images have generally been more informative than their conductivity counterparts, except in the case of fluid-filled cysts. Specifically, the mammographically normal breast appears to have characteristic absolute EITS permittivity and conductivity images that emerge across subjects. Structural features in the EITS images have correlated with limited clinical information available on participants with benign and malignant abnormality, cysts and scarring from previous lumpectomy and follow-up radiation therapy. Several cases from this preliminary experience are described.
Redox Regulation of Multidrug Resistance in Cancer Chemotherapy: Molecular Mechanisms and Therapeutic Opportunities (2008)

The development of multidrug resistance to cancer chemotherapy is a major obstacle to the effective treatment of human malignancies. It has been established that membrane proteins, notably multidrug resistance (MDR), multidrug resistance protein (MRP), and breast cancer resistance protein (BCRP) of the ATP binding cassette (ABC) transporter family encoding efflux pumps, play important roles in the development of multidrug resistance. Overexpression of these transporters has been observed frequently in many types of human malignancies and correlated with poor responses to chemotherapeutic agents. Evidence has accumulated showing that redox signals are activated in response to drug treatments that affect the expression and activity of these transporters by multiple mechanisms, including (a) conformational changes in the transporters, (b) regulation of the biosynthesis cofactors required for the transporter's function, (c) regulation of the expression of transporters at transcriptional, posttranscriptional, and epigenetic levels, and (d) amplification of the copy number of genes encoding these transporters. This review describes various specific factors and their relevant signaling pathways that are involved in the regulation. Finally, the roles of redox signaling in the maintenance and evolution of cancer stem cells and their implications in the development of intrinsic and acquired multidrug resistance in cancer chemotherapy are discussed.
A Broadside Scanning Substrate Integrated Waveguide Periodic Phase-Reversal Leaky-Wave Antenna (2015)

A broadside-scanning half-mode substrate integrated waveguide periodic leaky-wave antenna architecture with antipodal tapered slots is presented. The antenna builds upon a previously proposed architecture by introducing a periodic phase-reversal of radiating elements. This enables the antenna to operate with a comparatively low substrate permittivity while maintaining grating-lobe-free scanning from reverse to forward endfire.
Investigation of CoNiCr thin films deposited on (1991)

Co/sub 62.5/ Ni/sub 30/Cr/sub 7.5/ thin films were sputtered onto
Isolation and Variation in Virulence of Single-Spore Isolates of <i>Plasmodiophora brassicae</i> from Canada (2008)

Clubroot of crucifers, caused by Plasmodiophora brassicae, is emerging as an important disease of canola (Brassica napus) in Alberta, Canada. Populations of the pathogen often consist of a mixture of different pathotypes. Therefore, a simple and efficient method to isolate single resting spores of P. brassicae was developed, based on serial dilution of spore suspensions. The virulence of 24 single-spore isolates, representing five populations of the pathogen from Alberta, Ontario, and British Columbia, was characterized on the differentials of Williams and Somé et al. Symptoms were rated 6 weeks after inoculation and Fisher's least significant difference (P < 0.05) was used to differentiate resistant from susceptible host reactions. The pathotype composition of P. brassicae in Canada appeared more diverse when single-spore isolates were examined rather than populations of the pathogen. In Alberta, at least three and possibly four pathotypes were identified among the 14 isolates tested, whereas a maximum of only two pathotypes had been reported previously when populations of the pathogen were examined. Pathotype 3 or P<sub>2</sub>, as classified on the differentials of Williams and Somé et al., respectively, was found to be predominant in the province. The occurrence of other pathotypes at lower frequencies suggests that caution should be used in any breeding strategy, because rare pathotypes of P. brassicae may quickly become predominant if susceptible host genotypes are continuously grown.
Immunohistochemical Analysis of Proliferating Cells in a Sterile Labyrinthitis Animal Model (1998)

Abstract Inflammatory reactions within the cochlea lead to the formation of fibrotic tissue and bone. To determine which cells are involved in the proliferation of the inflammatory response within the cochlea, sterile labyrinthitis was created by inoculating keyhole limpet hemocyanin (KLH) into the scala tympani of systemically sensitized animals. Cellular proliferation was assessed immunohistochemically using the monoclonal antibody Ki‐67. Proliferating cells were identified among inflammatory cells and fibroblasts within the matrix, as well as in endosteal cells lining the scala tympani. Inflammatory and potential osteoprogenitor cells were labeled as late as 6 weeks after inoculation, suggesting the absence of a strong immunosuppressive mechanism. Endosteal cells may proliferate and secrete the extracellular matrix used by the inflammatory cells to move within the cochlear scalae. They may also participate in the ossification of the inflammatory matrix.
User identity and Access Management trends in IT infrastructure- an overview (2015)

Nowadays, people around the world completely depend and mostly use the Internet to maintain communication, contact with family, friends and with people around the world, access and exchange information, and enjoy multimedia communication. As the use of internet increase then users those who use internet and Access the information using internet in the organization or outside organization also increase. User Data security is very tedious and important part of IT system and its user lifecycle control system. Because of this the reason user data security is always consider while designing security systems for an organization. Modern approaches are to maintain the track of users and records of user access, Identity management systems and Access Management Systems are used. Identity management system help to provide a super-set of user provisioning systems that provide easy management of user credentials and their identity information to users and others those who need that information. Similarly Access Management Systems provide strong authentication and authorization solution using SSO, WebSEAL, and policy-based approach to identify who can access the resource at what level. The new research and approaches provide such a new functions base on organization policies that help to re-engine the access of user base on security procedures to the resources which are available. This paper provides an overview of the Identity Management Systems Access Management System and Federated Identity Manager that how they are use to manage the user security and also the challenges or risks in implementing a Secure system.
Visualizing Focus of Attention in Mixed Reality Community Space (2001)

Mixed Reality Community Space is a space where users can share a mixed reality environment with each other. In this space, users can share the information of real and virtual worlds together. However the mutual attention among the users are often lost because of the HMDs they are using. The attention is important for natural conversation discourse in the Mixed Reality Community Space as well as in an ordinary real space. In this paper, we propose a new technique to support the attention sharing in the Mixed Reality Community Space by visualizing the attention among the users. Key words: mixed reality, attention visualization, attention sharing,, eye-contact, HMD 1.
The role of superoxide and hydroxyl radicals in phospholipid peroxidation catalysed by iron salts (1982)

Iron(II) salts in aqueous solution, or iron(III) salts in the presence of an O.-2 generating system, can activate dioxygen to produce hydroxyl radicals. These are detected indirectly by their ability to degrade deoxyribose with the formation of thiobarbituric acid-reactive (TBA) products. Iron salts also catalyse the peroxidation of phospholipids resulting in the formation of TBA-reactive products. Hydroxyl radicals were responsible for the degradation of deoxyribose but not for the observed peroxidation of phospholipid. The function of O.-2 in both deoxyribose degradation and phospholipid peroxidation seems to be that of reducing iron(III) into iron(II).
Phase 1b/2 study of tivozanib in patients with advanced inoperable hepatocellular carcinoma. (2018)

364 Background: Sorafenib has been the only FDA-approved medication for inoperable HCC (iHCC) as first line. Agents with better tolerability and potential to improve progression-free-survival (PFS) are needed. Tivozanib (TIVO) is an inhibitor of vascular endothelial growth factor (VEGF) tyrosine kinase, inhibiting angiogenesis critical in HCC. Methods: This is a phase 1b/2 study with HCC patients (pts) having a measurable disease, Child-Pugh class A, and no prior systemic therapy. Phase 1b portion followed a modified 3 + 3 design; phase 2 portion was a two-stage, single arm, un-blinded study. Adverse events were categorized based on CTCAE, and tumor imaging was assessed per RECIST. Results: At 3 centers with IRB approval, 21 eligible pts were enrolled. In phase 1b, 8 pts were enrolled at a starting dose of 1mg once daily q21days with one week off. Upon escalation to 1.5mg, two pts had dose limiting toxicities (DLTs, grade 3 mucositis and hypertension) and came off study without completing the DLT period. The dose of TIVO was de-escalated to 1 mg, and the accrual of remaining patients to phase 2 portion occurred at 1 mg. In a total of 19 pts, median follow up was 16.9 months (mo). The primary endpoint of median PFS was 5.5 mo. Partial response (PR) was seen in 4/19 (21%) and stable disease (SD) in 8/19 (42%): disease control rate was 63%. Overall survival (OS) at 6 and 12 mo was 58% and 25%. Median OS was 7.5 mo. Three pts have remained on TIVO for > 2 years. Viral loads of hepatitis B and C remained stable during the study. Adverse events (AEs) related to TIVO included grade 3 fatigue (15.7%), decreased appetite (5.3%), pulmonary embolism (5.3%), hand-foot syndrome (5.3%), elevated LFT (10.5%), and grade 4 hypertension (5.3%). Conclusions: TIVO is tolerable at 1 mg in iHCC. In few pts, TIVO had deep and durable responses. Biomarker driven studies of TIVO in the context of immunotherapy are warranted. Acknowledgment: We appreciate support from NCCN. Clinical trial information: NCT01835223.
Glucose determinations in plasma and serum: potential error related to increased hematocrit. (1982)

This study reports the effect of increased hematocrit (packed cell volume) on the rate of decrease in plasma glucose during 6 h in blood specimens from seven newborns (cord blood) and heparin-treated blood specimens from eight adults. Mean hematocrits ranged frm 0.43 to 0.75 for the adults and from 0.51 to 0.81 for the infants. The decrease in glucose was related to time and to hematocrit. For example, in adults with a mean hematocrit of 0.43, glucose decreased from 890 +/- 40 mg/L to 570 +/- 30 mg/L (mean +/- SEM) at 6 h, whereas in adults with a mean hematocrit of 0.75, glucose decreased from 890 +/- 40 to 200 +/- 30 mg/L. In infants with a mean hematocrit of 0.51, glucose decreased from 1010 +/- 20 to 480 +/- 70 mg/L at 6 h; infants with a mean hematocrit of 0.81 had blood glucose decrease from 1010 +/- 20 to 50 +/- 30 mg/L. These results indicate that the incidence of hypoglycemia in infants with polycythemia may be overestimated, and emphasize the need for prompt handling of blood samples collected from newborns for glucose determinations.
Effect of Surface Roughness on Hemolysis in a Centrifugal Blood Pump (1996)

Surface roughness of a blood pump is an important factor for blood cell damage. This study investigated the effect of surface roughness pertaining to hemolysis in a centrifugal pump. In vitro hemolysis tests were performed under cardiopulmonary bypass (CPB; 5 L/min, 350 mmHg) and left ventricular assist device (LVAD; 5 L/min, 100 mmHg) conditions using the pivot bearing supported Gyro centrifugal pump (C1E3). Seven types of pumps with impellers and housings with different surface roughness were prepared as follows: vapor polish (VP) housing and VP impeller; VP housing and sandpaper (SP) impeller; VP housing and fine sandblasting (FSB) impeller; VP housing and coarse sandblasting (CSB) impeller; SP housing and VP impeller; FSB housing and VP impeller; and CSB housing and VP impeller. The results revealed that 1) the effect of surface roughness on hemolysis was significantly larger with CPB than LVAD; 2) surface roughness, regardless of the impeller or housing, had little effect on hemolysis with LVAD; and 3) during CPB, the surface roughness of the pump housing had a larger effect on hemolysis than did that of the impeller. In conclusion, from a hemolytic point of view, it is likely that an extremely smooth pump housing is required for an impeller centrifugal pump for CPB. However, it is likely that a smooth surface is not as essential for this impeller centrifugal pump as for an LVAD.
International Practices in Forensic Speaker Comparison (2011)

The results of the first international survey on forensic speaker comparison practices are presented in this paper. Thirty-six experts from 13 countries and 5 continents responded to a series of questions concerning their practices in casework. Despite the responses revealing a range of differences, there is nevertheless a reasonably strong convergence with respect to the importance assigned to particular speech features, methodology and choice of framework for expressing conclusions. Practices and preferences revealed by the survey are discussed in the context of constraints imposed by the institutions and jurisdictions within which the participants are situated, and in relation to contemporary trends and developments within forensic speech science.
Cognitive Enhancement and Motivation Enhancement: An Empirical Comparison of Intuitive Judgments (2015)

In an empirical study, we compared how lay people judge motivation enhancement as opposed to cognitive enhancement. We found alienation is not seen as a danger associated with either form of enhanc...
Comparative proteome analysis of abdominal adipose tissues between fat and lean broilers (2016)

Our results have provided further information for understanding the basic genetics control of growth and development of broiler adipose tissue.
Glutathione ethyl ester reverses the deleterious effects of fentanyl on ventilation and arterial blood-gas chemistry while prolonging fentanyl-induced analgesia (2021)

There is an urgent need to develop novel compounds that prevent the deleterious effects of opioids such as fentanyl on minute ventilation while, if possible, preserving the analgesic actions of the opioids. We report that L-glutathione ethyl ester (GSHee) may be such a novel compound. In this study, we measured tail flick latency (TFL), arterial blood gas (ABG) chemistry, Alveolar-arterial gradient, and ventilatory parameters by whole body plethysmography to determine the responses elicited by bolus injections of fentanyl (75 μg/kg, IV) in male adult Sprague-Dawley rats that had received a bolus injection of GSHee (100 μmol/kg, IV) 15 min previously. GSHee given alone had minimal effects on TFL, ABG chemistry and A-a gradient whereas it elicited changes in some ventilatory parameters such as an increase in breathing frequency. In vehicle-treated rats, fentanyl elicited (1) an increase in TFL, (2) decreases in pH, pO<sub>2</sub> and sO<sub>2</sub> and increases in pCO<sub>2</sub> (all indicative of ventilatory depression), (3) an increase in Alveolar-arterial gradient (indicative of a mismatch in ventilation-perfusion in the lungs), and (4) changes in ventilatory parameters such as a reduction in tidal volume, that were indicative of pronounced ventilatory depression. In GSHee-pretreated rats, fentanyl elicited a more prolonged analgesia, relatively minor changes in ABG chemistry and Alveolar-arterial gradient, and a substantially milder depression of ventilation. GSHee may represent an effective member of a novel class of thiolester drugs that are able to prevent the ventilatory depressant effects elicited by powerful opioids such as fentanyl and their deleterious effects on gas-exchange in the lungs without compromising opioid analgesia.