gebhart/patrepeval huggingface dataset:
Synthesis of high density aviation fuel with cyclopentanol derived from lignocellulose (2015)

For the first time, renewable high density aviation fuels were synthesized at high overall yield (95.6%) by the Guerbet reaction of cyclopentanol which can be derived from lignocellulose, followed by the hydrodeoxygenation (HDO). The solvent-free Guerbet reaction of cyclopentanol was carried out under the co-catalysis of solid bases and Raney metals. Among the investigated catalyst systems, the combinations of magnesium-aluminium hydrotalcite (MgAl-HT) and Raney Ni (or Raney Co) exhibited the best performances. Over them, high carbon yield (96.7%) of C10 and C15 oxygenates was achieved. The Guerbet reaction products were further hydrodeoxygenated to bi(cyclopentane) and tri(cyclopentane) over a series of Ni catalysts. These alkanes have high densities (0.86 g mL(-1) and 0.91 g mL(-1)) and can be used as high density aviation fuels or additives to bio-jet fuel. Among the investigated HDO catalysts, the 35 wt.% Ni-SiO2-DP prepared by deposition-precipitation method exhibited the highest activity.
Functional and Molecular Glycobiology (2023)

Functional and Molecular Glycobiology explains the chemistry of carbohydrates, and the biosynthesis and diversity of different types of glycans. It looks at the functional role of glycoconjugate compounds in normal cellular processes, in both disease and development. The book also describes how these compounds can be studied, analysed and manipulated for use in biotechnology. Functional and Molecular Glycobiology is a unique introduction to the field bridging the gap between introductory books and current research.
PSG Flow in High-Pressure Steam (1990)

Phosphosilicate glass (PSG) flow in high-pressure gas ambient is examined. PSG flow is enhanced with increasing pressure of steam ambient. Annealing temperature can be reduced by 80°C or the phosphorous concentration can be decreased by about 2 wt% by increasing the steam partial pressure from 0.95 kg/cm 2 to 8.5 kg/cm 2 from the viewpoint of planarization. The increase in pressure of dry N 2 or dry O 2 as ambient gas is not effective in enhancing PSG flow. The newly developed LSI (large scale integration) circuit process where a silicon nitride film underlies the PSG film is effective in preventing the oxidation of polysilicon and substrate during the flow in high-pressure steam. The FTIR result indicates that PSG films annealed in high-pressure steam absorb much less water than PSG films annealed in dry O 2 .
An Ultrasonic Standing-wave-actuated Nano-positioning Walking Robot: Piezoelectric-metal Composite Beam Modeling (2006)

This paper proposes a design for a precision positioning miniature walking robot using piezoelectric unimorph actuators. The theoretical working equations of a uniform piezoelectric unimorph beam are derived based on the linear piezoelectric relations, Hamilton’s principle, and Euler-Bernoulli beam equation. Themodal superposition method is used to determine the response of the forced transverse vibration of the beam under the effect of electrical signal inputs to the patterned piezoelectric element. Two standing waves corresponding to the third and fourth bending vibration modes are utilized to achieve the bi-directional walking mechanism for a miniature positioning robot. Design strategies and the fabrication method for the proposed walking robot are introduced. Preliminary performance tests of the robot prototype are carried out successfully, and the robot achieves speeds of 5.86 cm/sec and 3.37 cm/sec in forward and backward motion, respectively.
Production and Detection of Reactive Oxygen Species (ROS) in Cancers (2011)

Reactive oxygen species include a number of molecules that damage DNA and RNA and oxidize proteins and lipids (lipid peroxydation). These reactive molecules contain an oxygen and include H(2;)O(2;) (hydrogen peroxide), NO (nitric oxide), O(2;)(-) (oxide anion), peroxynitrite (ONOO(-)), hydrochlorous acid (HOCl), and hydroxyl radical (OH(-)). Oxidative species are produced not only under pathological situations (cancers, ischemic/reperfusion, neurologic and cardiovascular pathologies, infectious diseases, inflammatory diseases, autoimmune diseases , etc…) but also during physiological (non-pathological) situations such as cellular metabolism. Indeed, ROS play important roles in many cellular signaling pathways (proliferation, cell activation, migration etc..). ROS can be detrimental (it is then referred to as "oxidative and nitrosative stress") when produced in high amounts in the intracellular compartments and cells generally respond to ROS by upregulating antioxidants such as superoxide dismutase (SOD) and catalase (CAT), glutathione peroxidase (GPx) and glutathione (GSH) that protects them by converting dangerous free radicals to harmless molecules (i.e. water). Vitamins C and E have also been described as ROS scavengers (antioxidants). Free radicals are beneficial in low amounts. Macrophage and neutrophils-mediated immune responses involve the production and release of NO, which inhibits viruses, pathogens and tumor proliferation. NO also reacts with other ROS and thus, also has a role as a detoxifier (ROS scavenger). Finally NO acts on vessels to regulate blood flow which is important for the adaptation of muscle to prolonged exercise. Several publications have also demonstrated that ROS are involved in insulin sensitivity. Numerous methods to evaluate ROS production are available. In this article we propose several simple, fast, and affordable assays; these assays have been validated by many publications and are routinely used to detect ROS or its effects in mammalian cells. While some of these assays detect multiple ROS, others detect only a single ROS.
Coaxial electrospinning of WO<sub>3</sub>nanotubes functionalized with bio-inspired Pd catalysts and their superior hydrogen sensing performance (2015)

Macroporous WO3 nanotubes (NTs) functionalized with nanoscale catalysts were fabricated using coaxial electrospinning combined with sacrificial templating and protein-encapsulated catalysts. The macroporous thin-walled nanotubular structures were obtained by introducing colloidal polystyrene (PS) particles to a shell solution of W precursor and poly(vinylpyrrolidone). After coaxial electrospinning with a core liquid of mineral oil and subsequent calcination, open pores with an average diameter of 173 nm were formed on the surface of WO3 NTs due to decomposition of the PS colloids. In addition, catalytic Pd nanoparticles (NPs) were synthesized using bio-inspired protein cages, i.e., apoferritin, and uniformly dispersed within the shell solution and subsequently on the WO3 NTs. The resulting Pd functionalized macroporous WO3 NTs were demonstrated to be high performance hydrogen (H2) sensors. In particular, Pd-functionalized macroporous WO3 NTs exhibited a very high H2 response (Rair/Rgas) of 17.6 at 500 ppm with a short response time. Furthermore, the NTs were shown to be highly selective for H2 compared to other gases such as carbon monoxide (CO), ammonia (NH3), and methane (CH4). The results demonstrate a new synthetic method to prepare highly porous nanotubular structures with well-dispersed nanoscale catalysts, which can provide improved microstructures for chemical sensing.
Papain‐Catalyzed Chemoenzymatic Synthesis of Telechelic Polypeptides Using Bis(Leucine Ethyl Ester) Initiator (2016)

In order to construct unique polypeptide architectures, a novel telechelic-type initiator with two leucine ethyl ester units is designed for chemoenzymatic polymerization. Glycine or alanine ethyl ester is chemoenzymatically polymerized using papain in the presence of the initiator, and the propagation occurs at each leucine ethyl ester unit to produce the telechelic polypeptide. The formation of the telechelic polypeptides is confirmed by (1) H NMR and MALDI-TOF mass spectroscopies. It is revealed by AFM observation that long nanofibrils are formed from the telechelic polyalanine, whereas a conventional linear polyalanine with a similar degree of polymerization shows granule-like structures. The telechelic polyglycine and polyalanine show the crystalline structures of Polyglycine II and antiparallel β-sheet, respectively. It is demonstrated that this method to synthesize telechelic-type polypeptides potentially opens up a pathway to construct novel hierarchical structures by self-assembly.
Survival of Patients With Stage B2 Colon Carcinoma (1989)

The Gastrointestinal Tumor Study Group, a multispecialty collaborative clinical research program, executed two studies of surgically resected colon carcinoma, including patients with serosal penetration but no positive regional lymph nodes (stage B2). In the first study, 232 patients with stage B2 disease were operated on and survival was unaffected by therapy. In the stage B2 group, survival was 78% at five years, and is estimated to be 64% ten years after surgery. A second study, begun in 1979, compared survival and recurrence data on patients who underwent surgical resection and were treated postoperatively with fluorouracil and hepatic irradiation vs those who were observed. Hematologic toxicity of the regimen and accumulation of data from the first study caused the termination of randomization of patients with stage B2 disease with continued registration to observation only. One hundred twenty-four untreated patients with stage B2 carcinoma had a five-year survival rate of 77%, confirming the relatively high survival of this group of patients who are treated with surgery alone. Our patients' five-year survival of 78% corresponds favorably to the 87% survival rate anticipated in an age-, sex-, and race-matched cohort of Americans not specifically diagnosed as having cancer. Adjuvant trials, in seeking improved survival, should recognize that our review of 356 patients implies a considerably higher-than-anticipated five-year survival for the patient with stage B2 disease who undergoes surgical resection.(ABSTRACT TRUNCATED AT 250 WORDS)
Feature selection in the pattern classification problem of digital chest radiograph segmentation (1995)

In pattern classification problems, the choice of variables to include in the feature vector is a difficult one. The authors have investigated the use of stepwise discriminant analysis as a feature selection step in the problem of segmenting digital chest radiographs. In this problem, locally calculated features are used to classify pixels into one of several anatomic classes. The feature selection step was used to choose a subset of features which gave performance equivalent to the entire set of candidate features, while utilizing less computational resources. The impact of using the reduced/selected feature set on classifier performance is evaluated for two classifiers: a linear discriminator and a neural network. The results from the reduced/selected feature set were compared to that of the full feature set as well as a randomly selected reduced feature set. The results of the different feature sets were also compared after applying an additional postprocessing step which used a rule-based spatial information heuristic to improve the classification results. This work shows that, in the authors' pattern classification problem, using a feature selection step reduced the number of features used, reduced the processing time requirements, and gave results comparable to the full set of features.
Highly efficient Cas9-mediated gene drive for population modification of the malaria vector mosquito <i>Anopheles stephensi</i> (2015)

Genetic engineering technologies can be used both to create transgenic mosquitoes carrying antipathogen effector genes targeting human malaria parasites and to generate gene-drive systems capable of introgressing the genes throughout wild vector populations. We developed a highly effective autonomous Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-associated protein 9 (Cas9)-mediated gene-drive system in the Asian malaria vector Anopheles stephensi, adapted from the mutagenic chain reaction (MCR). This specific system results in progeny of males and females derived from transgenic males exhibiting a high frequency of germ-line gene conversion consistent with homology-directed repair (HDR). This system copies an ∼ 17-kb construct from its site of insertion to its homologous chromosome in a faithful, site-specific manner. Dual anti-Plasmodium falciparum effector genes, a marker gene, and the autonomous gene-drive components are introgressed into ∼ 99.5% of the progeny following outcrosses of transgenic lines to wild-type mosquitoes. The effector genes remain transcriptionally inducible upon blood feeding. In contrast to the efficient conversion in individuals expressing Cas9 only in the germ line, males and females derived from transgenic females, which are expected to have drive component molecules in the egg, produce progeny with a high frequency of mutations in the targeted genome sequence, resulting in near-Mendelian inheritance ratios of the transgene. Such mutant alleles result presumably from nonhomologous end-joining (NHEJ) events before the segregation of somatic and germ-line lineages early in development. These data support the design of this system to be active strictly within the germ line. Strains based on this technology could sustain control and elimination as part of the malaria eradication agenda.
ANN based designing and cost determination system for induction motor (2005)

An artificial neural network based computer-aided designing system together with the manufacturing cost estimation system for industrial induction motors is presented. The aim is to contribute to the understanding of the new system. Based on the actual design data for various types of induction motors, the cascaded artificial neural networks have been trained to calculate the output of the fundamental data and parameters. After the training, the dimensions and the basic parameters have been estimated quite accurately from the specification of the individual induction motor on the cascaded three artificial neural networks. The manufacturing cost of the individual motor has also been predicted precisely by using the neural network at the last stage of design. The proposed neural network based designing system including the cost estimation system is quite efficient in reducing the manpower of the designing process and also in enabling optimal design in a restricted time period without the knowledge of experts.
Studies on Mechanisms for Lysine Production by Pyruvate Kinase-Deficient Mutants of<i>Brevibacterium flavurn</i> (1984)

Methionine-insensitive revertants with normal homoserine dehydrogenase (HD) derived from Brevibacterium flavum mutant No. 1-231, a lysine producer with S-(2-aminoethyl)-l-cysteine (AEC) resistance, methionine sensitivity, a low HD level and a pyruvate kinase (PK) defect, were still AEC-resistant and PK-deficient similar to No. 1-231. But they did not produce more lysine than the original strain, No. 15-8, from which strain No. 1-231 was derived. A high lysine producing mutant, No. 22, which was derived from strain No. 1-231, selected by sensitivity to β-fluoropyruvate (FP), and was defective in HD, produced more lysine than HD-defective mutants which were derived by two-step mutation from strain No. 1-231, selected by homoserine auxotrophy. Strain No. 22 did not show FP sensitivity under the conditions tested. Among various lysine-biosynthetic enzymes examined, it had a higher level of aspartate-β-semialdehyde dehydrogenase than did its parent and the latter HD-defective mutants. Strain No. 22 produced 50 g/liter of lysine as the HC1 salt when cultured for 72 hr in a medium containing soybean-meal hydrolysate, methionine and 100 g/liter of glucose.
The low-density-lipoprotein receptor-related protein (LRP) is processed by furin in vivo and in vitro (1996)

The low-density-lipoprotein receptor-related protein (LRP) is a multifunctional receptor involved in the clearance of a large number of diverse ligands, including proteases, protease-inhibitor complexes and lipoproteins. The mature receptor is composed of a 515 kDa and a 85 kDa subunit generated by proteolytic cleavage from a 600 kDa precursor polypeptide in a trans-Golgi compartment. Proteolytic processing occurs C-terminal to the tetrabasic amino acid sequence RHRR, a consensus recognition site for precursor processing endoproteases or convertases. In this study we have identified furin, a subtilisin-type protease, to be necessary for efficient processing of LRP in cells. Furin-deficient RPE.40 cells exhibited an impaired processing of endogenous LRP and of a recombinant soluble form of the receptor containing the processing site. The processing defect in RPE.40 cells could be complemented by expression of furin from a transfected cDNA in cultured cells and by purified furin in vitro. The impaired maturation of LRP in RPE.40 cells did not affect its intracellular transport, and correlated with a slight but consistent reduction in the endocytosis of LRP-specific ligands. These data suggest that proteolytic processing of LRP by furin is not necessary for intracellular trafficking but might be required for normal receptor activity.
Computation of the continuous-time PAR of an OFDM signal with BPSK subcarriers (2001)

A procedure for computing the continuous-time peak-to-average power ratio (PAR) of an orthogonal frequency-division multiplexing (OFDM) signal, with binary phase-shift keying (BPSK) subcarriers, is developed. It is shown that the instantaneous envelope power function (EPF) can be transformed into a linear sum of Chebyshev polynomials. Consequently, the roots of the derivative of EPF can be obtained by solving a polynomial. Using the procedure to evaluate the difference between the continuous-time and discrete-time PAR, it is shown that an oversampling factor of four is accurate.
Inhibitory effect of zonisamide on human carbonic anhydrase in vitro. (1993)

We examined the relative potencies of zonisamide (CAS 68291-97-4) to acetazolamide in inhibiting carbonic anhydrases in human erythrocytes and purified human carbonic anhydrase I and II in vitro and found them to be about 1/150, 1/8 and 1/188, respectively. The IC50 values of zonisamide and acetazolamide for the inhibition of erythrocyte enzymes were close to those of purified carbonic anhydrase II. This result indicates that zonisamide actually differs from acetazolamide in their actions on the physiological events which are coupled with CO2 hydration in vivo.
Total Internal Reflection Fluorescence Microscopy (2019)

The goal in fluorescence microscopy is to detect the signal of fluorescently labeled molecules with great sensitivity and minimal background noise. In epifluorescence microscopy, it is difficult to observe weak signals along the optical axis, owing to the overpowering signal from the out-of-focus particles. Confocal microscopy uses a small pinhole to produce thin optical sections ( 500 nm), but the pinhole rejects some of the in-focus photons as well. Total internal reflection fluorescence microscopy (TIRFM) is a wide-field illumination technique that illuminates only the molecules near the glass coverslip. It has become widely used in biological imaging because it has a significantly reduced background and high temporal resolution capability. TIRFM has been used to study proteins in vitro as well as signaling cascades by hormones and neurotransmitters, intracellular cargo transport, actin dynamics near the plasma membrane, and focal adhesions in living cells. Because TIRF illumination is restricted to the glass-water interface and does not penetrate the specimen, it is well suited for studying the interaction of molecules within or near the cell membrane in living cells.
Absolute marine gravimetry with matter-wave interferometry (2018)

Measuring gravity from an aircraft or a ship is essential in geodesy, geophysics, mineral and hydrocarbon exploration, and navigation. Today, only relative sensors are available for onboard gravimetry. This is a major drawback because of the calibration and drift estimation procedures which lead to important operational constraints. Atom interferometry is a promising technology to obtain onboard absolute gravimeter. But, despite high performances obtained in static condition, no precise measurements were reported in dynamic. Here, we present absolute gravity measurements from a ship with a sensor based on atom interferometry. Despite rough sea conditions, we obtained precision below 10<sup>-5</sup> m s<sup>-2</sup>. The atom gravimeter was also compared with a commercial spring gravimeter and showed better performances. This demonstration opens the way to the next generation of inertial sensors (accelerometer, gyroscope) based on atom interferometry which should provide high-precision absolute measurements from a moving platform.
A Mathematical Derivation of Power Penetration Depth for<i>Thin</i>Lossy Materials (1992)

Microwaves propagating through a medium of finite thickness d consist of backward as well as forward moving components as a result of internal reflections at the material boundaries. In many practical applications, e.g., when estimating the proportion of energy absorbed by a water-like dielectric material during food processing, it is usually assumed that the backward components are so small as to be negligible. In this work we use mathematical analysis to show firstly that serious errors could result from a neglect of the backward components when d is less than (500 , the nominal skin-depth of the material. Secondly it is found that the coefficients of reflection, absorption and transmission of energy all exhibit strong oscillatory behaviors in the thickness domain, a feature the implications of which we believe have never been fully appreciated. Thirdly, the current definition of the skin-depth, or its associated power penetration depth, is found to give rise to non-unique results when one tries to apply it to describe a material which is thinner than 2 (L. In the case of the power penetration depth, by considering power absorption instead of decay within the material, a definition applicable to materials of any thickness can be derived. This is equivalent to the older definition in the limit as thickness tends to infinity.
A Synthesized Framework for Formal Verification of Computing Systems (2003)

Design process of computing systems gradually evolved to a level that encompasses formal verification techniques. However, the integration of formal verification techniques into a methodical design procedure has many inherent miscomprehensions and problems. The paper explicates the discrepancy between the real system implementation and the abstracted model that is actually used in the formal verification procedure. Particular attention is paid to the seamless integration of all phases of the verification procedure that encompasses definition of the specification language and denotation and execution of conformance relation between the abstracted model and its intended behavior. The concealed obstacles are exposed, computationally expensive steps identified and possible improvements proposed.