gebhart/patrepeval huggingface dataset:
Interaction between water and defective silica surfaces (2011)

We use the density functional theory method to study dry (1 × 1) α-quartz (0001) surfaces that have Frenkel-like defects such as oxygen vacancy and oxygen displacement. These defects have distinctively different effects on the water-silica interface depending on whether the adsorbent is a single water molecule, a cluster, or a thin film. The adsorption energies, bonding energies, and charge transfer or redistributions are analyzed, from which we find that the existence of a defect enhances the water molecule and cluster surface interaction by a large amount, but has little or even negative effect on water thin film-silica surface interaction. The origin of the weakening in film-surface systems is the collective hydrogen bonding that compromises the water-surface interaction in the process of optimizing the total energy. For clusters on surfaces, the lowest total energy states lower both the bonding energy and the adsorption energy.
Properties of aluminum films deposited by low energy and high density ion bias sputtering method using cusp magnetic field electrode (2002)

To improve both aluminum film properties and step coverage in contact and via holes, a low-energy and high-density ion bombardment bias sputtering method at medium substrate temperature (under 400 degrees C) using a cusp magnetic field electrode was developed. Properties of aluminum films deposited under different conditions are evaluated to determine the correct substrate bias voltage (-50 V) and bias current (20 mA/cm/sup 2/). By proper selection of processing parameters, aluminum films with high
Measurement of reduced and total mercaptamine in urine using liquid chromatography with ultraviolet detection (2008)

A simple liquid chromatographic method for the determination of reduced and total mercaptamine in human urine is described. The method is based on derivatization with 2-chloro-1-methylquinolinium tetrafluoroborate followed by ion-pairing reversed-phase liquid chromatography separation and ultraviolet-absorbance detection at 355 nm. Total mercaptamine was determined by reductive conversion of its oxidized fraction to the thiol form before the derivatization step. Baseline separation was achieved on an analytical Zorbax SB C(18) (5 microm, 150 x 4.6 mm) column with a mobile phase consisting of pH 2.0 0.05 mol L(-1) trichloroacetic acid buffer (component A) and acetonitrile (component B) pumped at 1.2 mL min(-1). Gradient elution was used: 0-3 min 12% B, 3-9 min 12-30% B, 9-12 min 30-12% B. The response of the detector was linear within the ranges studied, from 0.1 to 50 micromol L(-1) for reduced mercaptamine and from 0.4 to 400 micromol L(-1) for total mercaptamine. The imprecision ranges for reduced and total mercaptamine were within 1.45-11.71 and 0.73-10.61%, respectively. The analytical accuracy for determined compounds was from 98.79 to 109.77%. The lower limits of detection and quantitation were 0.05 and 0.1 micromol L(-1) of urine for reduced mercaptamine, and 0.2 and 0.4 micromol L(-1) of urine for total mercaptamine, respectively. This method can be used for routine clinical monitoring of the title thiol-drug and its reduced and oxidized fractions. Moreover, cysteine and cysteinylglycine can be measured concurrently, if needed.
Error performance evaluation for CRC coding schemes in downlink signalling of HSDPA (2004)

The paper analyses the error performances of different CRC coding schemes for transmitting UE-IDs (user equipment IDs) via the shared physical control channel in HSDPA (high speed downlink packet access). It is shown that there is no performance advantage in preventing the UE-ID from being transmitted explicitly, compared to the conventional CRC coding scheme, especially when the multi-user transmission structure is considered as a whole system for performance evaluation.
Proper complex random processes with applications to information theory (1993)

The covariance of complex random variables and processes, when defined consistently with the corresponding notion for real random variables, is shown to be determined by the usual complex covariance together with a quantity called the pseudo-covariance. A characterization of uncorrelatedness and wide-sense stationarity in terms of covariance and pseudo-covariance is given. Complex random variables and processes with a vanishing pseudo-covariance are called proper. It is shown that properness is preserved under affine transformations and that the complex-multivariate Gaussian density assumes a natural form only for proper random variables. The maximum-entropy theorem is generalized to the complex-multivariate case. The differential entropy of a complex random vector with a fixed correlation matrix is shown to be maximum if and only if the random vector is proper, Gaussian, and zero-mean. The notion of circular stationarity is introduced. For the class of proper complex random processes, a discrete Fourier transform correspondence is derived relating circular stationarity in the time domain to uncorrelatedness in the frequency domain. An application of the theory is presented.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Effect of diaphragmatic contraction on the action of the canine parasternal intercostals (2006)

The inspiratory intercostal muscles enhance the force generated by the diaphragm during lung expansion. However, whether the diaphragm also alters the force developed by the inspiratory intercostals is unknown. Two experiments were performed in dogs to answer the question. In the first experiment, external, cranially oriented forces were applied to the different rib pairs to assess the effect of diaphragmatic contraction on the coupling between the ribs and the lung. The fall in airway opening pressure (deltaPa(O)) produced by a given force on the ribs was invariably greater during phrenic nerve stimulation than with the diaphragm relaxed. The cranial rib displacement (Xr), however, was 40-50% smaller, thus indicating that the increase in deltaPa(O) was exclusively the result of the increase in diaphragmatic elastance. In the second experiment, the parasternal intercostal muscle in the fourth interspace was selectively activated, and the effects of diaphragmatic contraction on the deltaPa(O) and Xr caused by parasternal activation were compared with those observed during the application of external loads on the ribs. Stimulating the phrenic nerves increased the deltaPa(O) and reduced the Xr produced by the parasternal intercostal, and the magnitudes of the changes were identical to those observed during external rib loading. It is concluded, therefore, that the diaphragm has no significant synergistic or antagonistic effect on the force developed by the parasternal intercostals during breathing. This lack of effect is probably related to the constraint imposed on intercostal muscle length by the ribs and sternum.
Advances in X-Band and S-Band Linear Accelerators for Security, NDT, and Other Applications (2006)

At AS&E High Energy Systems Division, we designed several new advanced high energy electron beam and X-ray sources. Our primary focus has always been in building the world’s most portable commercial X-band accelerators. Today, our X-band systems frequently exceed performance of the similar S-band machines, while they are more portable compared to the latter. The new designs of the X-band accelerators in the most practical energy range from 1 MeV to 6 MeV have been tested delivering outstanding results. More than 100 linacs systems have been produced over HES history and history of its predecessor, SRC. The most compact linac for security is used by AS&E in a self-shielded, Shaped Energy ™ cargo screening system. We pioneered using the X-band linear accelerators for CT, producing high quality images of oil pipes and wood logs. An X-band linear accelerator head on a robotic arm has been used for electron beam radiation curing of an odd-shaped graphite composite part. We developed the broad-range 4 MeV to over 10 MeV energy-regulated X-band and S-band systems for medical and NDT applications. The regulated pulse length systems operating in a range from nanoseconds to microseconds have been built both in X-band and in S-band frequency range.
Measurement of Fetal Movements by Moving-Coil Transducer (1980)

A transducer for the detection of fetal movements is described. The transducer is based on a coil moving in a magnetic field. It produces a signal as a result of fetal movements which create changes on the matemal anterior abdomen. The transducer is not affected by slow movements, maternal respiration, and uterine contractions. The sensitivity of the transducer in comparison with other means of fetal movement assessment is discussed.
Growth pattern and bonding of copper clusters (2002)

Abstract Density functional theory calculations of copper cluster Cu n with n =2–10 are analyzed with respect to their molecular orbitals. It is shown that shell type orbitals of s , p , and d character govern the electronic structure growth and have an influence on the geometric structure. They appear as highest occupied molecular orbital, lowest unoccupied molecular orbital, or as orbitals energetically close to these. Their occurrence can explain the magic numbers of shell models. The bonding in such structures can be explained by an analysis of the critical points of the molecular electrostatic potential. Six types of critical points are observed and related to bonds, rings, cages, lone pairs, and their connections. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002
A comparison of hydroponic and soil-based screening methods to identify salt tolerance in the field in barley (2012)

Success in breeding crops for yield and other quantitative traits depends on the use of methods to evaluate genotypes accurately under field conditions. Although many screening criteria have been suggested to distinguish between genotypes for their salt tolerance under controlled environmental conditions, there is a need to test these criteria in the field. In this study, the salt tolerance, ion concentrations, and accumulation of compatible solutes of genotypes of barley with a range of putative salt tolerance were investigated using three growing conditions (hydroponics, soil in pots, and natural saline field). Initially, 60 genotypes of barley were screened for their salt tolerance and uptake of Na(+), Cl(-), and K(+) at 150 mM NaCl and, based on this, a subset of 15 genotypes was selected for testing in pots and in the field. Expression of salt tolerance in saline solution culture was not a reliable indicator of the differences in salt tolerance between barley plants that were evident in saline soil-based comparisons. Significant correlations were observed in the rankings of genotypes on the basis of their grain yield production at a moderately saline field site and their relative shoot growth in pots at EC(e) 7.2 [Spearman's rank correlation (rs)=0.79] and EC(e) 15.3 (rs=0.82) and the crucial parameter of leaf Na(+) (rs=0.72) and Cl(-) (rs=0.82) concentrations at EC(e) 7.2 dS m(-1). This work has established screening procedures that correlated well with grain yield at sites with moderate levels of soil salinity. This study also showed that both salt exclusion and osmotic tolerance are involved in salt tolerance and that the relative importance of these traits may differ with the severity of the salt stress. In soil, ion exclusion tended to be more important at low to moderate levels of stress but osmotic stress became more important at higher stress levels. Salt exclusion coupled with a synthesis of organic solutes were shown to be important components of salt tolerance in the tolerant genotypes and further field tests of these plants under stress conditions will help to verify their potential utility in crop-improvement programmes.
Comparison of Spectral Similarity Measures for Compound Identification (2011)

Linear and nonlinear error models were considered for compound identification using Gaussian noise. As for linear error models, additive Gaussian models were constructed and multiplicative Gaussian models were used for nonlinear error models. For each error model, three similarity measures, cosine correlation, Pearson's correlation, and Spearman's rank correlation, were implemented to compare their performance of compound identification. Furthermore, the effect of zero intensities was investigated by calculating the correlation using two schemes, OR-zero and ALL-zero methods. The simulation studies showed that the rank-based correlation, Spearman's correlation, was more robust than other correlations to all the noises and ALL-zero method provides more information than OR-zero for compound identification.
Bombyx mori silk proteins. Characterization of large polypeptides (1975)

Proteins taken directly from the Bombyx mori silk gland have been separated and identified as either fibroin or sericin on the basis of their location within the gland and their amino acid composition. Molecular weights of these polypeptides have been determined by sodium dodecyl sulfate polyacrylamide gel electrophoresis, and by agarose-guanidine chromatography. Fibroin consists of approximately equimolar amounts of two large (350,000) polypeptide chains. These may be the products of distinct fibroin alleles present in hybrid silkworm strains. Sericin, on the other hand, is composed of at least the three largest polypeptides (130,000-220,000) present in a mixture of proteins ranging in size from about 20,000 to 220,000.
Identification of the Periplasmic Cobalamin-Binding Protein BtuF of<i>Escherichia coli</i> (2002)

Cells of Escherichia coli take up vitamin B(12) (cyano-cobalamin [CN-Cbl]) and iron chelates by use of sequential active transport processes. Transport of CN-Cbl across the outer membrane and its accumulation in the periplasm is mediated by the TonB-dependent transporter BtuB. Transport across the cytoplasmic membrane (CM) requires the BtuC and BtuD proteins, which are most related in sequence to the transmembrane and ATP-binding cassette proteins of periplasmic permeases for iron-siderophore transport. Unlike the genetic organization of most periplasmic permeases, a candidate gene for a periplasmic Cbl-binding protein is not linked to the btuCED operon. The open reading frame termed yadT in the E. coli genomic sequence is related in sequence to the periplasmic binding proteins for iron-siderophore complexes and was previously implicated in CN-Cbl uptake in Salmonella. The E. coli yadT product, renamed BtuF, is shown here to participate in CN-Cbl uptake. BtuF protein, expressed with a C-terminal His(6) tag, was shown to be translocated to the periplasm concomitant with removal of a signal sequence. CN-Cbl-binding assays using radiolabeled substrate or isothermal titration calorimetry showed that purified BtuF binds CN-Cbl with a binding constant of around 15 nM. A null mutation in btuF, but not in the flanking genes pfs and yadS, strongly decreased CN-Cbl utilization and transport into the cytoplasm. The growth response to CN-Cbl of the btuF mutant was much stronger than the slight impairment previously described for btuC, btuD, or btuF mutants. Hence, null mutations in btuC and btuD were constructed and revealed that the btuC mutant had a strong impairment similar to that of the btuF mutant, whereas the btuD defect was less pronounced. All mutants with defective transport across the CM gave rise to frequent suppressor variants which were able to respond at lower levels of CN-Cbl but were still defective in transport across the CM. These results finally establish the identity of the periplasmic binding protein for Cbl uptake, which is one of few cases where the components of a periplasmic permease are genetically separated.
Inferring Temperature From Optical Radiation Measurements (1986)

The methodology for inferring temperature from optical radiation exitent from an opaque surface is described. Beginning with the measurement equation, the output of the radiation thermometer is related to radiant flux reaching the detector. Characteristics of blackbody radiators are reviewed, and the effects of surface emissivity, reflected irradiances, and the atmosphere are presented. Applications to a reheat furnace and a direct-fired process heater illustrate the practical importance of these effects and point out the need for a firm understanding of the physics of thermal radiation to properly interpret radiation thermometer observations.
Purification of <i>Enterocytozoon bieneusi</i> Spores from Stool Specimens by Gradient and Cell Sorting Techniques (2004)

A three-step method for the purification of Enterocytozoon bieneusi spores from stool specimens was developed. The primary process of purification of the spores from bacterial contaminants involved Percoll gradient centrifugation followed by additional separation using cesium chloride density gradient centrifugation. The cesium chloride-isolated spores were further purified using a flow cytometer with cell sorting capabilities. Sorting was performed without the use of antibodies, fluorochromes, or dyes, leaving the sorted spores in their native state, which appears to be less destructive for spores. When quantified by flow cytometry using tubes with known numbers of highly fluorescent polystyrene beads, the sorted material showed a slight decrease in light scatter characteristics compared with the slightly larger Encephalitozoon species spores. Although the overall recovery of the E. bieneusi spores was low, calcofluor and Gram chromotrope staining, indirect immunofluorescence assay, and transmission electron microscopy revealed that the sorted material was highly purified and contained large numbers of E. bieneusi spores and relatively few bacteria and other debris. The sorted material appeared to be sufficiently pure and could be used for in vitro culture and for the development of a variety of diagnostic reagents as well as in studying the genome of E. bieneusi and host-parasite interactions.
Contributions of the horizontal and vertical components of particle velocity in 3D pressure wavefield reconstruction on dense receiver grids using generalized matching pursuit (2012)

Multichannel 3D reconstruction and deghosting techniques based on multicomponent streamer measurements of the pressure wavefield and its associated gradients were recently introduced in literature. In particular, the Generalized Matching Pursuit (GMP) technique was applied to multicomponent 3D synthetic data bringing significant improvements to address the aliasing arising from sparse crossline sampling. In this abstract, we present an example of real data acquired by an experimental 3D towed multicomponent cable array and show the performance of GMP applied to the multicomponent measurements. The real data examples illustrate that GMP reconstructs and deghosts the pressure wavefield onto a 2D receiver grid uniformly sampled at 6.25 m in both, the inline and the crossline directions, starting from a very limited number of crossline samples at realistic spacings (i.e., 75 m). We analyze the contribution of each component to the overall crossline reconstruction. We show that the crossline component of particle velocity is the key enabler for GMP to produce a very effective and robust reconstruction of the three-dimensional wavefield backscattered by the subsurface for each recorded seismic shot.
Demonstration of an N7 integrated fab process for metal oxide EUV photoresist (2016)

Inpria has developed a directly patternable metal oxide hard-mask as a robust, high-resolution photoresist for EUV lithography. In this paper we demonstrate the full integration of a baseline Inpria resist into an imec N7 BEOL block mask process module. We examine in detail both the lithography and etch patterning results. By leveraging the high differential etch resistance of metal oxide photoresists, we explore opportunities for process simplification and cost reduction. We review the imaging results from the imec N7 block mask patterns and its process windows as well as routes to maximize the process latitude, underlayer integration, etch transfer, cross sections, etch equipment integration from cross metal contamination standpoint and selective resist strip process. Finally, initial results from a higher sensitivity Inpria resist are also reported. A dose to size of 19 mJ/cm<sup>2</sup> was achieved to print pillars as small as 21nm.
What Is a Biosensor? (2019)

A biosensor should respond selectively, continuously, rapidly, specifically, and ideally without added reagent, and then different criteria must also be considered. The abundant literature that can be related to the keyword Biosensor proves without doubt that the field is attractive. It is an interdisciplinary area for which sharp limits cannot be defined easily. The concept of biosensor has evolved; for some authors it is a self-contained analytical device that responds selectively and reversibly to the concentration or activity of chemical species in biological samples. A first chemical or physical signal consecutive to molecular recognition by the bioactive layer is converted by the transducer into a second signal, generally electrical, with a transduction mode that can be electrochemical, thermal, optical, or based on mass variation. The biosensing element must be either intimately connected to or integrated within a physicochemical transducer. Numerous attempts to find a universal transducer that matches any kind of reaction have been reported.
Macro/Nano-Gel Composite as an Injectable and Bioactive Bulking Material for the Treatment of Urinary Incontinence (2014)

Many women around the world are suffering from urinary incontinence, defined as the unintentional leakage of urine by external abnormal pressure. Although various kinds of materials have been utilized to treat this disease, therapies that are more effective are still needed for the treatment of urinary incontinence. Here, we present a macro/nanogel composed of in situ forming gelatin-based macrogels and self-assembled heparin-based nanogels, which can serve as an injectable and bioactive bulking material for the treatment of urinary incontinence. The hybrid hydrogels were prepared via enzymatic reaction in the presence of horseradish peroxidase and hydrogen peroxide. Incorporating a growth factor (GF)-loaded heparin nanogel into a gelatin gel matrix enabled the hybrid gel matrix to release GF continuously up to 28 days. Moreover, we demonstrated that the hydrogel composites stimulated the regeneration of the urethral muscle tissue surrounding the urethral wall and promoted the recovery of their biological function when injected in vivo. Thus, the macro/nanohydrogels may provide an advanced therapeutic technique for the treatment of urinary incontinence as well as an application for regenerative medicine.
A Novel Scrambler Design for Enhancing Secrecy Transmission Based On Polar Code (2017)

Scrambling is a way of enhancing physical layer security presented in many papers. However, few of these papers have mentioned the scrambling effect on the polar coding secrecy. In this letter, we introduce a new scrambling module combined with a polar coding system, in which pre-assigned key is unnecessary. The presented scrambling module combines linear and nonlinear structure. The presented linear structure increases the branch number in a low-complexity way to enhance algorithm diffusion power, and the nonlinear part can resist the differential attack and reduces the mutual information between its input and output. With the proposed module, the bit channels, which are good for Bob and Eve, can also be applied to transmit secret message, making transmission rate of the secret massage configurable. Simulation results show that our method can guarantee the secrecy transmission between Alice and Bob.
Convenient Access to Substituted Acridines by a Buchwald—Hartwig Amination. (2004)

Abstract For Abstract see ChemInform Abstract in Full Text.