gebhart/patrepeval huggingface dataset:
Comparison of lysis-centrifugation with lysis-filtration and a conventional unvented bottle for blood cultures (1984)

Evaluation of a commercially available lysis-centrifugation blood culture system (Isolator, DuPont Co., Wilmington, Del.) and a lysis-filtration blood culture system for 3,111 cultures showed that both methods had comparable recoveries (73 and 68%, respectively) of significant aerobic and facultatively anaerobic isolates. The unvented conventional blood culture bottle had a recovery rate of 59%. Although the lysis-centrifugation and lysis-filtration systems had comparable recoveries of pathogens, the lysis-centrifugation system had the advantage of having colonies immediately available for further testing. The contamination rate with the lysis-centrifugation system was 3%, compared with 6% with the lysis-filtration system and 0.4% with brain heart infusion.
Problem of Boil - off in LNG Supply Chain (2013)

This paper examines the problem of evaporation of Liquefied Natural Gas (LNG) occurring at different places in the LNG supply chain. Evaporation losses in the LNG supply chain are one of the key factors for LNG safety, technical and economic assessment. LNG is stored and transported in tanks as a cryogenic liquid, i.e. as a liquid at a temperature below its boiling point at near atmospheric pressure. Due to heat entering the cryogenic tank during storage and transportation, a part of the LNG in the tank continuously evaporates creating a gas called Boil-Off Gas (BOG), which changes the quality of LNG over time. The general methods of handling and utilization of the Boil-Off Gas at different points in the LNG supply chain are presented. Attention is given to the issue of LNG energy content transferred during loading and unloading of LNG tankers, as well as to the Boil-Off Gas generated by evaporation of the cargo during maritime transport. The results presented in the paper have been derived from the scientifi research project 250 - 2502209 - 2366 „Management of Ship Power Systems under Fault Conditions and Failure“ supported by the Ministry of Science, Education and Sports of the Republic of Croatia.
Immunocytochemical study of the distribution of a 16-kDa galectin in the chicken retina. (1999)

The present study clearly supports the idea that the subcellular distribution of the 16-kDa galectin changes during the development of the chicken retina. Morphologic changes associated with developmentally regulated expression and subcellular compartmentalization of the retinal galectin suggest that this lectin may be involved in the modulation of several processes in the visual system. Its presence in the apical villi of Miller cells may be related by modulatory functions between retina and pigment epithelium, but its presence in the cytoplasm and nucleus of these glial cells suggests a potential immunomodulatory role and its involvement in different metabolic processes between Muller and the other retinal cells. Finally, although the presence of galectins inside mitochondria has not been described before, this localization gives rise to the idea that this lectin may be involved in the modulation of mitochondrial processes.
Accelerated Brain Gray Matter Loss in Fibromyalgia Patients: Premature Aging of the Brain? (2007)

Fibromyalgia is an intractable widespread pain disorder that is most frequently diagnosed in women. It has traditionally been classified as either a musculoskeletal disease or a psychological disorder. Accumulating evidence now suggests that fibromyalgia may be associated with CNS dysfunction. In this study, we investigate anatomical changes in the brain associated with fibromyalgia. Using voxel-based morphometric analysis of magnetic resonance brain images, we examined the brains of 10 female fibromyalgia patients and 10 healthy controls. We found that fibromyalgia patients had significantly less total gray matter volume and showed a 3.3 times greater age-associated decrease in gray matter than healthy controls. The longer the individuals had had fibromyalgia, the greater the gray matter loss, with each year of fibromyalgia being equivalent to 9.5 times the loss in normal aging. In addition, fibromyalgia patients demonstrated significantly less gray matter density than healthy controls in several brain regions, including the cingulate, insular and medial frontal cortices, and parahippocampal gyri. The neuroanatomical changes that we see in fibromyalgia patients contribute additional evidence of CNS involvement in fibromyalgia. In particular, fibromyalgia appears to be associated with an acceleration of age-related changes in the very substance of the brain. Moreover, the regions in which we demonstrate objective changes may be functionally linked to core features of the disorder including affective disturbances and chronic widespread pain.
Rethinking RFID (2010)

People now routinely carry radio frequency identification (RFID) tags - in passports, driver's licenses, credit cards, and other identifying cards - from which nearby RFID readers can access privacy-sensitive information. The problem is that people are often unaware of security and privacy risks associated with RFID, likely because the technology remains largely invisible and uncontrollable for the individual. To mitigate this problem, we introduce a collection of novel yet simple and inexpensive tag designs. Our tags provide reader awareness, where people get visual, audible, or tactile feedback as tags come into the range of RFID readers. Our tags also provide information control, where people can allow or disallow access to the information stored on the tag by how they touch, orient, move, press or illuminate the tag.
Current endoscopic techniques in the treatment of obesity (2012)

the development of new endoscopic techniques and improvement in existing designs, suggest an increasingly important role of the endoscopist in the treatment of obesity. We consider it important to individually select and use the endoscopic technique, depending on the desirable outcomes (efficacy, tolerance, safety, adverse effects and risks) and the experience of each hospital. We believe that these techniques should be applied by specifically trained endoscopists in specialized hospitals.
The diamond mesh, a phase-error- and loss-tolerant field-programmable MZI-based optical processor for optical neural networks (2020)

This paper presents the performance analysis of a phase error- and loss-tolerant multiport field-programmable MZI-based structure for optical neural networks (ONNs). Compared to the triangular (Reck) mesh, our proposed diamond mesh makes use of a larger number of MZIs, leading to a symmetric topology and adding additional degrees of freedom for the weight matrix optimization in the backpropagation process. Furthermore, the additional MZIs enable the diamond mesh to optimally eliminate the excess light intensity that degrades the performance of the ONNs through the tapered out waveguides. Our results show that the diamond topology is more robust to the inevitable imperfections in practice, i.e., insertion loss of the constituent MZIs and the phase errors. This robustness allows for better classification accuracy in the presence of experimental imperfections. The practical performance and the scalability of the two structures implementing different sizes of optical neural networks are analytically compared. The obtained results confirm that the diamond mesh is more error- and loss-tolerant in classifying the data samples in different sizes of ONNs.
Adapting Web Services for Multiple Devices: A Model-Driven, Aspect-Oriented Approach (2009)

Mobile devices have become an essential element in our daily lives, even for connecting to the Internet. Web Services have become extremely important when offering services through the Internet. However, current Web Services are very inflexible as regards their invocation from different types of device, especially if we consider the need for them to be adaptable when being invoked from a mobile device. In this paper, we will propose several alternatives for the creation of flexible web services which can be invoked from different types of device, and compare the different proposed approaches. Aspect-Oriented Programming and Model-Driven Development have been used in all proposals to reduce the impact of service adaption, not only for the service developer, but also to maintain the correct code structure.
Influence of Biofilm Formation by<i>Gardnerella vaginalis</i>and Other Anaerobes on Bacterial Vaginosis (2015)

Bacterial vaginosis (BV) is the worldwide leading vaginal disorder among women of reproductive age. BV is characterized by the replacement of beneficial lactobacilli and the augmentation of anaerobic bacteria. Gardnerella vaginalis is a predominant bacterial species, but BV is also associated with other numerous anaerobes, such as Atopobium vaginae, Mobiluncus mulieris, Prevotella bivia, Fusobacterium nucleatum, and Peptoniphilus species. Currently, the role of G. vaginalis in the etiology of BV remains a matter of controversy. However, it is known that, in patients with BV, a biofilm is usually formed on the vaginal epithelium and that G. vaginalis is typically the predominant species. So, the current paradigm is that the establishment of a biofilm plays a key role in the pathogenesis of BV. This review provides background on the influence of biofilm formation by G. vaginalis and other anaerobes, from the time of their initial adhesion until biofilm formation, in the polymicrobial etiology of BV and discusses the commensal and synergic interactions established between them to understand the phenotypic shift of G. vaginalis biofilm formation to BV establishment.
Complete cDNA sequence of human preceruloplasmin. (1986)

A cDNA for human ceruloplasmin (EC 1.16.3.1) was identified in a human liver cDNA library by screening with two mixtures of synthetic oligodeoxyribonucleotides that were complementary to two regions of ceruloplasmin mRNA as predicted from the amino acid sequence of plasma ceruloplasmin. The resulting clone (phCP1) contained DNA coding for amino acid residues 202-1046 of the protein, followed by a stop codon, a 3' untranslated region of 123 base pairs, and a poly(A) tail. To isolate cDNAs encoding the 5' end of ceruloplasmin mRNA, a cDNA library was constructed in lambda gt10. The cDNA for this library was synthesized by reverse transcription of human liver poly(A)+ RNA, using random oligonucleotides as primers. When this cDNA library was screened by using a 5' fragment of phCP1 as a hybridization probe, several positive clones were identified. One of these clones (lambda hCP1) contained DNA coding for a probable signal peptide of 19 amino acid residues followed by DNA coding for residues 1-380 of plasma ceruloplasmin. Blot hybridization analysis showed that ceruloplasmin mRNA from human liver and the human hepatoma cell line HepG2 is 3700 nucleotides in size. Liver contained an additional mRNA species that is like ceruloplasmin mRNA and is 4500 nucleotides in size. Comparison of the complete nucleotide sequences of human ceruloplasmin cDNA and human clotting factor VIII cDNA showed regions of sequence homology, suggesting that these two proteins have evolved from a common ancestor.
The Influence of the Surrounding Groundwater by Groundwater Discharge from the Subway Tunnel at Suyeong District, Busan City (2012)

This study carried out several kinds of investigations such as geology, hydrogeology, groundwater level and quality, surface-water quality, and the quantity and quality of groundwater discharge from the subway to identify the causes of groundwater contamination around the subway tunnel at Suyeong District in Busan City. Geostatistical analyses were also conducted to understand the characteristics of groundwater level and quality distributions. There are Kwanganri Beach and Suyeong River in the study area, which are basically influenced by seawater. The total quantities of groundwater utilization and groundwater discharge from the subway tunnel in Suyeong District are 2,282,000 <TEX>$m^3$</TEX>/year, which is 2.4 times larger than the sustainable development yield of groundwater. The lowest groundwater level around the subway tunnel is about 32 m below the mean sea-level. The large drawdown of groundwater led to the inflow of seawater and salinized river water toward the subway tunnel, and therefore the quality of groundwater didn't satisfy the criteria of potable, domestic, agricultural and industrial uses. Distribution maps of groundwater level and qualities produced by kriging were very useful for determining the causes of groundwater contamination in the study area. The distribution maps of electrical conductivity, chloride and sulfate showed the extent of seawater intrusion and the forceful infiltration of the salinized Suyeong River. This study revealed that seawater and salinized river water infiltrated into the inland groundwater and contaminated the groundwater around the subway tunnel, because the groundwater level was seriously drawdowned by groundwater discharge from the subway tunnel. The countermeasure for the minimization of groundwater discharge from the subway tunnel is necessary to prevent the groundwater obstacles such as groundwater depletion, groundwater-quality deterioration, and land subsidence.
One-Dimensional Transport with Inflow and Storage (OTIS): A Solute Transport Model for Streams and Rivers (1998)

OTIS is a mathematical simulation model used to characterize the fate and transport of water-borne solutes in streams and rivers. The governing equation underlying the model is the advection-dispersion equation with additional terms to account for transient storage, lateral inflow, first-order decay, and sorption. This equation and the associated equations describing transient storage and sorption are solved using a Crank-Nicolson finite-difference solution. OTIS may be used in conjunction with data from field-scale tracer experiments to quantify the hydrologic parameters affecting solute transport. This application typically involves a trial-and-error approach wherein parameter estimates are adjusted to obtain an acceptable match between simulated and observed tracer concentrations. Additional applications include analyses of nonconservative solutes that are subject to sorption processes or first-order decay. OTIS-P, a modified version of OTIS, couples the solution of the governing equation with a nonlinear regression package. OTIS-P determines an optimal set of parameter estimates that minimize the squared differences between the simulated and observed concentrations, thereby automating the parameter estimation process. This report details the development and application of OTIS and OTIS-P. Sections of the report describe model theory, input/output specifications, sample applications, and installation instructions.
Intrahepatic Recurrence After Resection of Hepatocellular Carcinoma Complicating Cirrhosis (1991)

To determine whether a careful evaluation of tumor extension by preoperative computed tomography scan after intra-arterial injection of ultrafluid lipiodol and by intraoperative ultrasound examination reduced the recurrence rate of hepatocellular carcinoma after resection, a series of 47 cirrhotic patients with a single tumor operated on from 1984 was studied. Alphafetoprotein level was less than 100 ng/mL in 26 patients (55%), size of the tumor was less than 5 cm in 28 patients (59%), and capsule was present in 30 patients (63%). The resection was performed with free margin measuring 1 cm or more. The overall cumulative survival rates at 3 and 5 years were 35% and 17%, respectively. Intrahepatic recurrence was observed in 28 patients (60%), located less than 2 cm from the resection margin in only four patients. The cumulative intrahepatic recurrence rate at 3 years was 81% and was significantly higher in patients with tumor greater than or equal to 5 cm and in patients with preoperative alphafetoprotein level of greater than or equal to 100 ng/mL. In this series the cumulative intrahepatic recurrence rate at 5 years was 100%. This high recurrence rate after resection, even with careful evaluation of tumor extension, indicates that liver transplantation might be envisaged for the treatment of cirrhotic patients with resectable hepatocellular carcinoma.
Novel imaging system for measuring microscale curvatures at high temperatures (2000)

An innovative system was designed to optically measure the curvature of microelectromechanical system at high temperatures. The system takes advantage of the limited numerical aperture of the imaging system to detect the curvature of cantilever beams. Images of the beam are used to determine beam curvature at high temperatures of up to 850 °C by analyzing the apparent change in beam length as seen by the camera during an experimental trial. The system is designed to operate at very high temperatures, which is difficult in conventional microscale curvature measurement techniques such as scanning electron microscopy or stylus profilometry due to excess heating of peripheral equipment. The system can measure curvatures as small as 300 m−1, which corresponds to tip deflections of 1.5 μm for a 100 μm beam. The resolution of the system is limited by the image resolution of the charge-coupled device camera, and increases at large curvatures. The maximum curvature that can be measured by the system is limited by the increase in system resolution, and is estimated to be 4500 m−1, corresponding to 22 μm deflection for a 100 μm beam. The apparatus was demonstrated to measure the thermally induced curvature of multilayered thin-film cantilever beams. The beams bend at high temperatures due to mismatch in thermal expansion coefficients between the layers. One innovative application of such curvature measurement is the determination of thermophysical properties of thin films at elevated temperatures. This article presents the experimental setup and operational theory of apparatus, as well as curvature measurements obtained by the system. The thermal expansion coefficient of polycrystalline silicon, determined from the curvature measurements, are also discussed.
Elastic and thermodynamic behaviour at the phase transitions of some hexa-ammine metal (II) complexes (1983)

Measurements of sound velocity and thermal expansion for some hexa-ammine metal (II) salts are presented over temperature regions spanning their phase transitions. Some evidence is found that the combination of elastic constants (C11+2C12+4C44) decreases as the phase transition in Ni(NH3)6Cl2 is approached from above. All phase transitions investigated are shown to be discontinuous with an associated volume change. Model calculations for the entropy increment associated with the phase transitions in the halide salts are also reported. The calculations are based on a removal of pseudo-isotropic reorientations of H3 groups at Tc, and give results that are in reasonable agreement with experimental data.
<i>Science Signaling</i> Podcast: 02 December 2008 (2008)

Sam Lee and Pat Ongusaha discuss their research on the mechanisms by which ultraviolet B radiation induces cell death.
Human Hepatocyte Culture (2006)

Primary culture of human hepatocytes is an in vitro model widely used to investigate numerous aspects of liver physiology and pathology. The technique used to isolate human hepatocytes is based on two-step collagenase perfusion. Originally performed in situ for obtaining hepatocytes from the adult rat, this technique has been adapted to the ex vivo treatment of human liver from organ donors or from lobectomy resection for medical purposes. This chapter describes experimental protocols for the isolation of hepatocytes from human liver tissue and for the preparation of short- and long-term cultures in which cells retain a differentiated phenotype for at least 1 mo. The various aspects emphasized here include the conditions for obtaining tissue, quality control of tissue for efficient perfusion, collagenase perfusion parameters, solutions for perfusion and culture media, cell substrate, cell plating, specific equipment, and safety conditions.
Flexible sheet-shaped waveguide for body-centric wireless communications (2010)

There have been growing interests in body-centric wireless communications. As a new candidate to support on-body propagation, this paper proposes to wear a smart suit, a subsidiary waveguide which wireless devices couple to. Our proposal waveguide is called as a free access mat which limits the arrival domain of radio systems to the area around itself. Wireless devices couple to it and the electromagnetic wave transmits through it. Data and power transmission is therefore possible through it. This paper presents experimental study of free access mat using flexible conductive textile which provides with conformity to wearable devices. This paper shows that flexible free access mat is applicable to body-centric wireless communications.
Magnetic Tuning of the Electrochemical Reactivity through Controlled Surface Orientation of Catalytic Nanowires (2006)

Nanowires have received considerable attention owing to their broad potential applications. We report here on the application of nanowires for magnetic control of the electrochemical reactivity and demonstrate how one can modulate the electrocatalytic activity by orienting catalytic nanowires at different angles. Unlike early "on/off" magnetic switching studies based on functionalized magnetic spheres, the present magnetoswitchable protocol relies on modulating the electrochemical reactivity without removing the magnetic material from the surface. Such behavior is attributed to the reversible blocking of the redox processes and to changes in the tortuosity-dependent flux rate. The nanowire-based magnetoswitchable protocol may be extremely useful for adjusting the electrochemical reactivity, such as for tuning the power output of fuel cells (rather than switching the power on/off).
Single attosecond pulse generation in the multicycle-driver regime by adding a weak second-harmonic field (2006)

We present a method of producing single attosecond pulses by high-harmonic generation with multicycle driver laser pulses. This can be achieved by tailoring the driving pulse so that attosecond pulses are produced only every full cycle of the oscillating laser field rather than every half-cycle. It is shown by classical and quantum-mechanical model calculations that even a minor addition (1%) of phase-locked second-harmonic light to the 800 nm fundamental driver pulse for high-harmonic generation leads to a major (15%) difference in the maximum kinetic energies of the recombining electrons in adjacent half-cycles.