gebhart/patrepeval huggingface dataset:
Glass Blowing on a Wafer Level (2007)

A fabrication process for the simultaneous shaping of arrays of glass shells on a wafer level is introduced in this paper. The process is based on etching cavities in silicon, followed by anodic bonding of a thin glass wafer to the etched silicon wafer. The bonded wafers are then heated inside a furnace at a temperature above the softening point of the glass, and due to the expansion of the trapped gas in the silicon cavities the glass is blown into three-dimensional spherical shells. An analytical model which can be used to predict the shape of the glass shells is described and demonstrated to match the experimental data. The ability to blow glass on a wafer level may enable novel capabilities including mass-production of microscopic spherical gas confinement chambers, microlenses, and complex microfluidic networks
Neuroleptic 2-chloro-11-(2-piperazineethoxy)-10,11-dihydrodibenzo[b,f]thiepins: Synthesis and pharmacology (1984)

A reaction of 8-chloro-10,11-dihydrodibenzo[ b,f ]thiepin-10-ol with 2-bromoethanol and boron trifluoride etherate produced the 2-bromoethyl ether II which was subjected to substitution reactions with 1-methylpiperazine, 1-(2-hydroxyethyl)piperazine, 1-(3-hydroxypropyl)piperazine and 1-ethoxycarbonylpiperazine to give the title piperazinoethoxy compounds IV-VII . Alkaline hydrolysis of the carbamate VII afforded the monosubstituted piperazine VIII . Compounds IV-VI are neuroleptics with an interesting activity profile: they are little toxic, have strong central depressant and antimorphine activity, mild cataleptic effects, they intensively increase the dopamine metabolism in the rat brain striatum and are almost free of the peripheral adrenolytic efficacy.
Line harmonics reduction in high-power systems using square-wave inverters-based dominant harmonic active filter (1999)

This paper presents a dominant harmonic active filter (DHAF) scheme using small-rated square-wave inverters for supply line harmonic current reduction for high-power nonlinear loads in the range of 10 MW and above to meet IEEE 519 harmonic standard. The active filter inverters are connected in series with the fifth and seventh L-C tuned filters, respectively. A synchronous reference frame-based controller which achieves harmonic isolation for the dominant fifth and seventh harmonic load currents in the presence of supply voltage harmonic distortion is presented. Impact of mistuned passive filters on the operation and rating of the square-wave active filter inverters is examined. Simulation results validate the proposed harmonic isolation controller under mistuned fifth and seventh L-C tuned filter conditions and supply voltage harmonic distortion. The proposed scheme is general and applicable for high-power 6- or 12-pulse rectifier loads. The use of small-rated square-wave inverters (approximately 2% of load kilovoltampere rating) increases the cost effectiveness of the DHAF system for high-power applications.
Antibodies Against Three Forms of Urokinase (2007)

Antibodies that bind to preselected regions of the urokinase molecule have been developed. These antibodies can be used to measure small quantities of each of three molecular forms of urokinase that could be contained in microsamples or conditioned media harvested from cultures of mammalian cells. Previously available antibodies and assay techniques do not yield both clear distinctions among, and measurements of, all three forms. Urokinase is a zymogen that is synthesized in a single-chain form, called ScuPA, which is composed of 411 amino acid residues (see figure). ScuPA has very little enzyme activity, but it can be activated in two ways: (1) by cleavage of the peptide bond lysine 158/isoleucine 159 and the loss of lysine 158 to obtain the high molecular-weight (HMW) form of the enzyme or (2) by cleavage of the bond lysine 135/lysine 136 to obtain the low-molecular-weight (LMW) form of the enzyme. The antibodies in question were produced in mice and rabbits by use of peptides as immunogens. The peptides were selected to obtain antibodies that bind to regions of ScuPA that include the lysine 158/isoleucine 159 and the lysine 135/lysine 136 bonds. The antibodies include monoclonal and polyclonal ones that yield indications as to whether either of these bonds is intact. The polyclonal antibodies include ones that preferentially bind to the HMW or LMW forms of the urokinase molecule. The monoclonal antibodies include ones that discriminate between the ScuPA and the HMW form. A combination of these molecular-specific antibodies will enable simultaneous assays of the ScuPA, HMW, and LMW forms in the same specimen of culture medium.
Localization of phytase in<i>Selenomonas ruminantium</i>and<i>Mitsuokella multiacidus</i>by transmission electron microscopy (2000)

The localization of phytase (myo-inositol-hexaphosphate phosphohydrolase) in the ruminal bacteria, Selenomonas ruminantium JY35 and Mitsuokella multiacidus 46/5(2), was determined with transmission electron microscopy. Phosphate produced from the enzymatic dephosphorylation of the calcium salt of phytic acid is precipitated as calcium phosphate. The calcium is then replaced with lead to produce electron-dense lead phosphate. This deposition of lead phosphate localized phytase in S. ruminantium JY35 and M. multiacidus 46/5(2) to the outer membrane, and confirmed intracellular expression of the enzyme in Escherichia coli pSrP.2, the recombinant clone which possesses the gene (phyA) encoding phytase (phyA) in S. ruminantium.
Demonstration of whispering-gallery-mode resonant enhancement of optical forces (2014)

We experimentally studied whispering-gallery-modes (WGMs) and demonstrated resonance enhancement of optical forces evanescently exerted on dielectric microspheres. We showed that the resonant light pressure can be used for optical sorting of microparticles with extraordinary uniform resonant properties that is unachievable by conventional sorting techniques.
Video compression using fax techniques (2002)

We have implemented approaches to compressing and decompressing a sequence of head-and-shoulders images that trade off the data rate, picture quality, computational complexity and latency. All these approaches are transform-free and pixel-based; some of them also involve no motion compensation and hence are free of block-based artifacts. We compare the magnitude of the intensity of each pixel site in the difference frame to a threshold. If the intensity at a pixel site is above the threshold, that pixel is a survivor; otherwise, that pixel is a casualty. We zero the intensity at each casualty pixel and leave the intensity intact at each surviving pixel. A bi-level frame is formed to represent the location map of the survivors and casualties. We gather the intensities at the surviving pixels into an intensity vector. The zeroed difference frame is therefore decomposed into a bi-level frame and an intensity vector. We modified the Group 3, Group 4 or JBIG facsimile standards to compress the bi-level frame and can achieve further compression by applying scalar quantization to each element of the intensity vector. Forming the difference frames by direct subtraction of the previous decompressed frame from the current input frame permits software-only realization of the compressor and decompressor on today's home and office computers for large (CIF or Q-NTSC) full-color formats at 30 frames per second for head-and-shoulders video at under 1.0 Mbps with PSNR>38 dB, assuming provision has been made for A/D converted camera output to be pipelined into the computer CPU in real time.
Semiconducting Perovskites (2-XC<sub>6</sub>H<sub>4</sub>C<sub>2</sub>H<sub>4</sub>NH<sub>3</sub>)<sub>2</sub>SnI<sub>4</sub> (X = F, Cl, Br):  Steric Interaction between the Organic and Inorganic Layers (2003)

Two new semiconducting hybrid perovskites based on 2-substituted phenethylammonium cations, (2-XC(6)H(4)C(2)H(4)NH(3))(2)SnI(4) (X = Br, Cl), are characterized and compared with the previously reported X = F compound, with a focus on the steric interaction between the organic and inorganic components. The crystal structure of (2-ClC(6)H(4)C(2)H(4)NH(3))(2)SnI(4) is solved in a disordered subcell [C2/m, a = 33.781(7) A, b = 6.178(1) A, c = 6.190(1) A, beta = 90.42(3)(o), and Z = 2]. The structure is similar to the known (2-FC(6)H(4)C(2)H(4)NH(3))(2)SnI(4) structure with regard to both the conformation of the organic cations and the bonding features of the inorganic sheet. The (2-BrC(6)H(4)C(2)H(4)NH(3))(2)SnI(4) system adopts a fully ordered monoclinic cell [P2(1)/c, a = 18.540(2) A, b = 8.3443(7) A, c = 8.7795(7) A, beta = 93.039(1)(o), and Z = 2]. The organic cation adopts the anti conformation, instead of the gauche conformation observed in the X = F and Cl compounds, apparently because of the need to accommodate the additional volume of the bromo group. The steric effect of the bromo group also impacts the perovskite sheet, causing notable distortions, such as a compressed Sn-I-Sn bond angle (148.7(o), as compared with the average values of 153.3 and 154.8(o) for the fluoro and chloro compounds, respectively). The optical absorption features a substantial blue shift (lowest exciton peak: 557 nm, 2.23 eV) relative to the spectra of the fluoro and chloro compounds (588 and 586 nm, respectively). Also presented are transport properties for thin-film field-effect transistors (TFTs) based on spin-coated films of the two hybrid semiconductors.
Activation of growth hormone releasing hormone (GHRH) receptor stimulates cardiac reverse remodeling after myocardial infarction (MI) (2011)

Both cardiac myocytes and cardiac stem cells (CSCs) express the receptor of growth hormone releasing hormone (GHRH), activation of which improves injury responses after myocardial infarction (MI). Here we show that a GHRH-agonist (GHRH-A; JI-38) reverses ventricular remodeling and enhances functional recovery in the setting of chronic MI. This response is mediated entirely by activation of GHRH receptor (GHRHR), as demonstrated by the use of a highly selective GHRH antagonist (MIA-602). One month after MI, animals were randomly assigned to receive: placebo, GHRH-A (JI-38), rat recombinant GH, MIA-602, or a combination of GHRH-A and MIA-602, for a 4-wk period. We assessed cardiac performance and hemodynamics by using echocardiography and micromanometry derived pressure-volume loops. Morphometric measurements were carried out to determine MI size and capillary density, and the expression of GHRHR was assessed by immunofluorescence and quantitative RT-PCR. GHRH-A markedly improved cardiac function as shown by echocardiographic and hemodynamic parameters. MI size was substantially reduced, whereas myocyte and nonmyocyte mitosis was markedly increased by GHRH-A. These effects occurred without increases in circulating levels of growth hormone and insulin-like growth factor I and were, at least partially, nullified by GHRH antagonism, confirming a receptor-mediated mechanism. GHRH-A stimulated CSCs proliferation ex vivo, in a manner offset by MIA-602. Collectively, our findings reveal the importance of the GHRH signaling pathway within the heart. Therapy with GHRH-A although initiated 1 mo after MI substantially improved cardiac performance and reduced infarct size, suggesting a regenerative process. Therefore, activation of GHRHR provides a unique therapeutic approach to reverse remodeling after MI.
Structural characterization of a murine myeloid leukaemia inhibitory factor (1988)

A leukaemia inhibitory factor (LIF) which induces macrophage differentiation in M1 murine myeloid leukaemia cells and suppresses their proliferation in vitro has been isolated in sufficient quantities (30 micrograms) from Krebs ascites tumour cell conditioned medium to permit its partial characterization by amino acid sequence analysis. The combination of sensitive microbore column (1.0 and 2.1 mm internal diameter) HPLC technology and microsequence analysis has enabled the positive identification of 125 of the total 179 amino acid residues (70%) in the molecule. The amino acid sequence data reported here permitted the isolation of a partial cDNA clone encoding LIF [Gearing et al. (1987) EMBO J. 6, 3995-4002]. A candidate C-terminus of the LIF molecule predicted from the amino acid sequence was confirmed by subsequent isolation of a cDNA clone corresponding to the C-terminus of the protein. No strong similarity was revealed when the amino acid sequence of LIF was compared with other haemopoietic growth factors, in particular granulocyte-macrophage colony-stimulating factor, granulocyte colony-stimulating factor and tumour necrosis factor-alpha or interleukins. The protein sequence data reported here indicate three sites of post-translational modification (N-linked glycosylation).
Induction of plasmacytomas secreting antigen-specific monoclonal antibodies with a retrovirus expressing v-abl and c-myc. (1991)

ABL-MYC, a recombinant murine retrovirus that expresses v-abl and c-myc, rapidly induces transplantable mono- or oligoclonal plasmacytomas in BALB/c mice. To determine if the targets for transformation of this retrovirus are antigen-committed B lymphocytes and to explore this system as an alternative technique for producing antigen-specific monoclonal antibodies, plasmacytomas were induced in mice that had been immunized with two different types of immunogens, hen egg white lysozyme and sheep red blood cells. The majority of these plasmacytomas secreted immunogen-specific antibodies. Plasmacytomas induced in unimmunized mice did not react with hen egg white lysozyme or sheep red blood cells. The specific antibodies were comparable in concentration, specificity, and affinity to monoclonal antibodies obtained with conventional hybridoma technology, but, in addition to IgGs and IgMs, they included specific IgA antibodies, which are rare among splenic-derived hybridomas. Our results demonstrate that a principal target for ABL-MYC is an antigen-committed B lymphocyte. In addition this procedure provides an alternative method for the production of monoclonal antibodies, without a requirement for hetero-caryon formation by cell fusion techniques.
Controlled Microwave-Assisted Growth of Silica Nanoparticles under Acid Catalysis (2012)

In this work, we demonstrate the controlled synthesis of silica nanoparticles as small as 30 nm (±5 nm) and as large as 250 nm (±30 nm) in minutes using surfactant free, microwave-assisted synthetic techniques. Proper choice of solvent, silicic acid precursor, catalyst, and microwave irradiation time were the variables used to control nanoparticle size and, ultimately, overcome the previously reported shortcomings of using microwaves for silica nanoparticle synthesis. In these reactions acetone, a low-tan δ solvent, mediates the condensation reaction, while selective absorption of pulsed microwave radiation by the precursor promotes nanoparticle growth. Dynamic light scattering data, scanning electron micrographs, and transmission electron micrographs of the reaction products show that the size, shape, and granularity of the silica nanoparticles are highly dependent on reaction conditions. These microwave methods have utility for mass production of silica nanoparticles or other nanoparticles by flow-through microwave synthetic methods for industrial applications, as well as a facile method for encapsulating or embedding materials with silica for improved functionality and stability.
Simultaneous two-photon excitation of distinct labels for dual-color fluorescence crosscorrelation analysis (2000)

Confocal fluorescence correlation spectroscopy as a time-averaging fluctuation analysis combining maximum sensitivity with high statistical confidence has proved to be a very versatile and powerful tool for detection and temporal investigation of biomolecules at ultralow concentrations on surfaces, in solutions, and in living cells. To probe the interaction of different molecular species for a detailed understanding of biologically relevant mechanisms, crosscorrelation studies on dual or multiple fluorophore assays with spectrally distinct excitation and emission are particularly promising. Despite the considerable improvement of detection specificity provided by fluorescence crosscorrelation analysis, few applications have so far been reported, presumably because of the practical challenges of properly aligning and controlling the stability of the experimental setup. In this work, we demonstrate that two-photon excitation combined with dual-color fluorescence correlation spectroscopy can be the key to simplifying simultaneous investigations of multiple fluorescent species significantly on a single-molecule scale. Two-photon excitation allows accession of common fluorophores of largely distinct emission by the same excitation wavelength, because differences in selection rules and vibronic coupling can induce considerable shifts between the one-photon and two-photon excitation spectra. The concept of dual-color two-photon fluorescence crosscorrelation analysis is introduced and experimentally demonstrated with an established assay probing the selective cleavage of dual-labeled DNA substrates by restriction endonuclease EcoRI.
Bayesian spectrum analysis for laser vibrometry processing (2000)

Laser vibration sensing provides a sensitive non-contact means of measuring vibrations of objects. These measurements are used in industrial quality control and wear monitoring as well as the analysis of the vibrational characteristics of objects. In laser vibrometry, the surface motion is monitored by heterodyne laser Doppler velocimetry, and the received heterodyne signal is sampled to produce a time-series which is processed to obtain a vibrational spectrum of the object under test. Laser vibrometry data has been processed with a traditional FM discriminator approach and by spectrogram and time-frequency distribution processing techniques. The latter techniques have demonstrated improved performance over the FM discriminator method, but do not take full advantage of the prior knowledge one has about the signal of interest. We consider here a statistical signal processing approach to laser vibrometry data. In this approach the quantities of interest are the frequencies of vibration, while the phase and quadrature amplitudes are considered nuisance parameters. Because of the optimal use of prior knowledge about the laser vibrometry signal, the frequencies can be determined with much greater precision and greater noise immunity than using Fourier- or time-frequency-based approaches. Furthermore, the statistical approach is known to have superior performance when the data extends over a small number of vibrational periods. We illustrate the method with data from a fiber-optic laser Doppler velocimeter. Our results show that while the choice of processing method for determining the instantaneous velocity is relatively unimportant, the Bayesian method exhibits superior performance in determining the vibrational frequency.
Antibody-Dependent Enhancement: A Challenge for Developing a Safe Dengue Vaccine (2020)

In 2019, the United States Food and Drug Administration accorded restricted approval to Sanofi Pasteur's Dengvaxia, a live attenuated vaccine (LAV) for dengue fever, a mosquito-borne viral disease, caused by four antigenically distinct dengue virus serotypes (DENV 1-4). The reason for this limited approval is the concern that this vaccine sensitized some of the dengue-naïve recipients to severe dengue fever. Recent knowledge about the nature of the immune response elicited by DENV viruses suggests that all LAVs have inherent capacity to predominantly elicit antibodies (Abs) against the pre-membrane (prM) and fusion loop epitope (FLE) of DENV. These antibodies are generally cross-reactive among DENV serotypes carrying a higher risk of promoting Antibody-Dependent Enhancement (ADE). ADE is a phenomenon in which suboptimal neutralizing or non-neutralizing cross-reactive antibodies bind to virus and facilitate Fcγ receptor mediated enhanced entry into host cells, followed by its replication, and thus increasing the cellular viral load. On the other hand, antibody responses directed against the host-cell receptor binding domain of DENV envelope domain-III (EDIII), exhibit a higher degree of type-specificity with lower potential of ADE. The challenges associated with whole DENV-based vaccine strategies necessitate re-focusing our attention toward the designed dengue vaccine candidates, capable of inducing predominantly type-specific immune responses. If the designed vaccines elicited predominantly EDIII-directed serotype specific antibodies in the absence of prM and FLE antibodies, this could avoid the ADE phenomenon largely associated with the prM and FLE antibodies. The generation of type-specific antibodies to each of the four DENV serotypes by the designed vaccines could avoid the immune evasion mechanisms of DENVs. For the enhanced vaccine safety, all dengue vaccine candidates should be assessed for the extent of type-specific (minimal ADE) vs. cross-reactive (ADE promoting) neutralizing antibodies. The type-specific EDIII antibodies may be more directly related to protection from disease in the absence of ADE promoted by the cross-reactive antibodies.
Design of a Multi-Dopamine-Modified Polymer Ligand Optimally Suited for Interfacing Magnetic Nanoparticles with Biological Systems (2014)

We have designed a set of multifunctional and multicoordinating polymer ligands that are optimally suited for surface functionalizing iron oxide and potentially other magnetic nanoparticles (NPs) and promoting their integration into biological systems. The amphiphilic polymers are prepared by coupling (via nucleophilic addition) several amine-terminated dopamine anchoring groups, poly(ethylene glycol) moieties, and reactive groups onto a poly(isobutylene-alt-maleic anhydride) (PIMA) chain. This design greatly benefits from the highly efficient and reagent-free one-step reaction of maleic anhydride groups with amine-containing molecules. The availability of several dopamine groups in the same ligand greatly enhances the ligand affinity, via multiple coordination, to the magnetic NPs, while the hydrophilic and reactive groups promote colloidal stability in buffer media and allow subsequent conjugation with target biomolecules. Iron oxide nanoparticles ligand exchanged with these polymer ligands have a compact hydrodynamic size and exhibit enhanced long-term colloidal stability over the pH range of 4-12 and in the presence of excess electrolytes. Nanoparticles ligated with terminally reactive polymers have been easily coupled to target dyes and tested in live cell imaging with no measurable cytotoxicity. Finally, the resulting hydrophilic nanoparticles exhibit large and size-dependent r2 relaxivity values.
Harmonic mode-locked fiber laser with semiconductor saturable absorber and amplitude modulation (2003)

Summary from only given. We have developed a fiber laser passively mode-locked with a semiconductor saturable absorber mirror (SESAM) that uses amplitude modulation to produce an equally spaced pulse train. The important aspect of this study is that active pulse synchronization was achieved without changing the pulse shape generated passively. We have found that harmonic suppression and time ordering are significantly improved for optimal amplitude modulation.