gebhart/patrepeval huggingface dataset:
Platinum complexes of vitamin C. NMR studies on the solution chemistry of cis-platinum(diamine)(ascorbate) complexes (1987)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTPlatinum complexes of vitamin C. NMR studies on the solution chemistry of cis-platinum(diamine)(ascorbate) complexesL. Steven Hollis, Eric W. Stern, Alan R. Amundsen, Arthur V. Miller, and Sheryl L. DoranCite this: J. Am. Chem. Soc. 1987, 109, 12, 3596–3602Publication Date (Print):June 1, 1987Publication History Published online1 May 2002Published inissue 1 June 1987https://pubs.acs.org/doi/10.1021/ja00246a016https://doi.org/10.1021/ja00246a016research-articleACS PublicationsRequest reuse permissionsArticle Views253Altmetric-Citations37LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information Get e-Alerts
Global error minimization in image mosaicing using graph connectivity and its applications in microscopy (2012)

Several applications such as multiprojector displays and microscopy require the mosaicing of images (tiles) acquired by a camera as it traverses an unknown trajectory in 3D space. A homography relates the image coordinates of a point in each tile to those of a reference tile provided the 3D scene is planar. Our approach in such applications is to first perform pairwise alignment of the tiles that have imaged common regions in order to recover a homography relating the tile pair. We then find the global set of homographies relating each individual tile to a reference tile such that the homographies relating all tile pairs are kept as consistent as possible. Using these global homographies, one can generate a mosaic of the entire scene. We derive a general analytical solution for the global homographies by representing the pair-wise homographies on a connectivity graph. Our solution can accommodate imprecise prior information regarding the global homographies whenever such information is available. We also derive equations for the special case of translation estimation of an X-Y microscopy stage used in histology imaging and present examples of stitched microscopy slices of specimens obtained after radical prostatectomy or prostate biopsy. In addition, we demonstrate the superiority of our approach over tree-structured approaches for global error minimization.
Towards Building a MetaQuerier: Extracting and Matching Web Query Interfaces (2005)

We witness the rapid growth and thus the prevalence of databases on the Web. Our recent study in April 2004 estimated 450,000 online databases. On this deep Web, myriad databases provide dynamic query-based data access through their query interfaces, instead of static URL links. It is thus essential to integrate these query interfaces for integrating the deep Web. The overall goal of the MetaQuerier project aims at opening up the deep Web to users, by building a system to help users exploring and integrating deep Web sources. In particular, to start with, we focus on the integration of deep Web sources in the same domain, which is itself an important integration task. To automate this integration scenario, we need to solve two critical problems: extracting query interfaces and matching query interfaces. To solve the interface extraction problem, we introduce a parsing paradigm by hypothesizing the existence of hidden syntax which describes the layout and semantic of Web interfaces. Also, unlike traditional pairwise schema matching, we propose a holistic matching approach, which matches all schemas at the same time with the hypothesis of a hidden schema model. Therefore, our techniques explore, in essence, "data mining for information integration." That is, we mine the observable information to discover the underlying semantics.
High-Throughput Characterization of Protein-Protein Interactions by Reprogramming Yeast Mating (2017)

Abstract High-throughput methods for screening protein-protein interactions enable the rapid characterization of engineered binding proteins and interaction networks. While existing approaches are powerful, none allow quantitative library-on-library characterization of protein interactions in a modifiable extracellular environment. Here, we show that sexual agglutination of S. cerevisiae can be reprogrammed to link interaction strength with mating efficiency using synthetic agglutination (SynAg). Validation of SynAg with 89 previously characterized interactions shows a log-linear relationship between mating efficiency and protein binding strength for interactions with K D ’s ranging from below 500 pM to above 300 μM. Using induced chromosomal translocation to pair barcodes representing binding proteins, thousands of distinct interactions can be screened in a single pot. We demonstrate the ability to characterize protein interaction networks in a modifiable environment by introducing a soluble peptide that selectively disrupts a subset of interactions in a representative network by up to 800-fold. SynAg enables the high-throughput, quantitative characterization of protein-protein interaction networks in a fully-defined extracellular environment at a library-on-library scale. Significance Statement De novo engineering of protein binders often requires experimental screening to select functional variants from a design library. We have achieved high-throughput, quantitative characterization of protein-protein binding interactions without requiring purified recombinant proteins, by linking interaction strength with yeast mating. Using a next-generation sequencing output, we have characterized protein networks consisting of thousands of pairwise interactions in a single tube and have demonstrated the effect of changing the binding environment. This approach addresses an existing bottleneck in protein binder design by enabling the high-throughput and quantitative characterization of binding strength between designed protein libraries and multiple target proteins in a fully defined environment.
Analysis and Evaluation of the Image Preprocessing Process of a Six-Band Multispectral Camera Mounted on an Unmanned Aerial Vehicle for Winter Wheat Monitoring (2019)

Unmanned aerial vehicle (UAV)-based multispectral sensors have great potential in crop monitoring due to their high flexibility, high spatial resolution, and ease of operation. Image preprocessing, however, is a prerequisite to make full use of the acquired high-quality data in practical applications. Most crop monitoring studies have focused on specific procedures or applications, and there has been little attempt to examine the accuracy of the data preprocessing steps. This study focuses on the preprocessing process of a six-band multispectral camera (Mini-MCA6) mounted on UAVs. First, we have quantified and analyzed the components of sensor error, including noise, vignetting, and lens distortion. Next, different methods of spectral band registration and radiometric correction were evaluated. Then, an appropriate image preprocessing process was proposed. Finally, the applicability and potential for crop monitoring were assessed in terms of accuracy by measurement of the leaf area index (LAI) and the leaf biomass inversion under variable growth conditions during five critical growth stages of winter wheat. The results show that noise and vignetting could be effectively removed via use of correction coefficients in image processing. The widely used Brown model was suitable for lens distortion correction of a Mini-MCA6. Band registration based on ground control points (GCPs) (Root-Mean-Square Error, RMSE = 1.02 pixels) was superior to that using PixelWrench2 (PW2) software (RMSE = 1.82 pixels). For radiometric correction, the accuracy of the empirical linear correction (ELC) method was significantly higher than that of light intensity sensor correction (ILSC) method. The multispectral images that were processed using optimal correction methods were demonstrated to be reliable for estimating LAI and leaf biomass. This study provides a feasible and semi-automatic image preprocessing process for a UAV-based Mini-MCA6, which also serves as a reference for other array-type multispectral sensors. Moreover, the high-quality data generated in this study may stimulate increased interest in remote high-efficiency monitoring of crop growth status.
Process for Assembly and Transformation into Saccharomyces cerevisiae of a Synthetic Yeast Artificial Chromosome Containing a Multigene Cassette to Express Enzymes That Enhance Xylose Utilization Designed for an Automated Platform (2015)

A yeast artificial chromosome (YAC) containing a multigene cassette for expression of enzymes that enhance xylose utilization (xylose isomerase [XI] and xylulokinase [XKS]) was constructed and transformed into Saccharomyces cerevisiae to demonstrate feasibility as a stable protein expression system in yeast and to design an assembly process suitable for an automated platform. Expression of XI and XKS from the YAC was confirmed by Western blot and PCR analyses. The recombinant and wild-type strains showed similar growth on plates containing hexose sugars, but only recombinant grew on D-xylose and L-arabinose plates. In glucose fermentation, doubling time (4.6 h) and ethanol yield (0.44 g ethanol/g glucose) of recombinant were comparable to wild type (4.9 h and 0.44 g/g). In whole-corn hydrolysate, ethanol yield (0.55 g ethanol/g [glucose + xylose]) and xylose utilization (38%) for recombinant were higher than for wild type (0.47 g/g and 12%). In hydrolysate from spent coffee grounds, yield was 0.46 g ethanol/g (glucose + xylose), and xylose utilization was 93% for recombinant. These results indicate introducing a YAC expressing XI and XKS enhanced xylose utilization without affecting integrity of the host strain, and the process provides a potential platform for automated synthesis of a YAC for expression of multiple optimized genes to improve yeast strains.
A Case of Nonneurologic Gaucherʼs Disease that Biochemically Resembles the Neurologic Types (1991)

Systemic findings such as hepatosplenomegaly and typical Gaucher storage cells in a bone marrow aspirate led to the clinical diagnosis of Gaucher's disease in the seven-year old patient described in this report. On the basis of the lack of neurologic involvement the child was classified as having the Type 1, nonneurologic form of Gaucher's disease. After splenectomy glucocerebrosidase was extracted from her spleen for biochemical analysis. As expected, a marked deficiency of glucocerebrosidase activity was evident in the splenic extract, however her enzyme displayed anomalous behavior compared to other identical splenic preparations from documented Type 1 Gaucher's disease patients in that it failed to reconstitute with the acidic lipid phosphatidylserine. Using the polymerase chain reaction (PCR)-based color complementation assay and restriction endonuclease analysis, we compared the mutation genotype of this child with that of five other classical Type 1 patients. This analysis revealed that our patient alone was homoallelic for a T----C transition at position 1448 in the glucocerebrosidase cDNA that results in a 444Leu----Pro substitution in the glucocerebrosidase protein. The latter mutation genotype is normally associated with the neurologic phenotype, namely, the Types 2 and 3 forms of the disease. The relevance of the nature of polarity in clinical and biochemical analyses is discussed with regard to the phenotypic classification and the future clinical course of disease in the child.
Mechanism of Low Temperature Inactivation of a Heat-Resistant Bacterial Protease in Milk (1978)

The heat-resistant protease MC60 underwent a conformational transition at 55 C which resulted in loss of enzyme activity. Under certain conditions, this loss was irreversible. In the absence of sufficient substrate, the transition rendered the altered protease susceptible to autolysis. Heating high concentrations of enzyme in milk resulted in loss of enzyme activity by the formation of an enzymecasein aggregate and by autolysis. Experiments with radioactively-labeled protease showed that low concentrations of enzyme in milk were inactivated only by aggregation with casein micelles. Aggregation and autolysis in milk were prevented by high concentrations of sodium chloride or urea, and aggregation was reversed with 6 M urea at elevated temperatures. The possibility of inactivating heat-resistant enzymes at low temperatures (55 C) may be applicable to other food systems.
Cloning and Expression of a Novel Murine Anti-human Fas Antibody (2000)

Agonistic anti-human Fas antibodies that can induce apoptosis are thought to have therapeutic effects for various diseases resulting from an abnormality of the Fas/FasL system. However, some anti-Fas antibodies show toxicity, and it is difficult to investigate their therapeutic and toxicological effect using animals because of their species specificity. We previously obtained a murine anti-human Fas mAb, HFE7A. HFE7A reacted with both human and murine Fas, and mitigated lymphadenopathy without any sign of hepatotoxicity in MRLgld/gld mice. It is suggested that humanized HFE7A would be a therapeutic treatment for various diseases resulting from an abnormality of the Fas/FasL system. Here we isolated the cDNAs that code for the heavy and light chains of HFE7A and identified the corresponding nucleotide sequences. The recombinant HFE7A was indistinguishable in binding and apoptosis-inducing activity to that from a hybridoma cell line. These data provide essential information for the humanization and clinical application of the humanized HFE7A.
Slice-Based Prostate Segmentation in 3D US Images Using Continuity Constraint (2005)

In the diagnosis and therapy of prostate cancer, it is critical to measure the volume of the prostate and locate its boundary. Three-dimensional transrectal ultrasound (3D TRUS) imaging has been demonstrated to be a useful technique to perform such a task. Due to image speckle as well as low contrast in ultrasound images, segmentation of the prostate in 3D US images is challenging. In this paper, we report on the development of an improved slice-based 3D prostate segmentation method. First, we imposed a continuity constraint for the end points of the prostate boundaries in a cross-sectional plane so that a smooth prostate boundary in 2D is obtained. Then, in each 2D slice, we inserted the end points into the vertex list of the initial contour to obtain a new contour, which forces the evolving contour to be driven to the boundary of the prostate. Evaluation demonstrated that our method could segment the prostate in 3D TRUS images more quickly and accurately.
Inhibition of Cancer Cell Growth by Ruthenium(II) Arene Complexes (2001)

Inhibition of the growth of the human ovarian cancer cell line A2780 by organometallic ruthenium(II) complexes of the type [(eta(6)-arene)Ru(X)(Y)(Z)], where arene is benzene or substituted benzene, X, Y, and Z are halide, acetonitrile, or isonicotinamide, or X,Y is ethylenediamine (en) or N-ethylethylenediamine, has been investigated. The X-ray crystal structures of the complexes [(eta(6)-p-cymene)Ru(en)Cl]PF(6) (5), [(eta(6)-p-cymene)RuCl(2)(isonicotinamide)] (7), and [(eta(6)-biphenyl)Ru(en)Cl]PF(6) (9) are reported. They have "piano stool" geometries with eta(6) coordination of the arene ligand. Complexes with X,Y as a chelated en ligand and Z as a monofunctional leaving group had the highest activity. Complexes 5, 6 (the iodo analogue of 5), 9, and 10 (ethylethylenediamine analogue of 9) were as active as carboplatin. Hydrolysis of the reactive Ru-Cl bond in complex 5 was detected by HPLC but was suppressed by the addition of chloride ions. Complex 5 binds strongly and selectively to G bases on DNA oligonucleotides to form monofunctional adducts. No inhibition of topoisomerase I or II by complexes 5, 6, or 9 was detected. These chelated Ru(II) arene complexes have potential as novel metal-based anticancer agents with a mechanism of action different from that of the Ru(III) complex currently on clinical trial.
Therapeutic Efficacy of Vectored PGT121 Gene Delivery in HIV-1-Infected Humanized Mice (2018)

Broadly neutralizing antibodies (bNAbs) are being explored for HIV-1 prevention and cure strategies. However, administration of purified bNAbs poses challenges in resource-poor settings, where the HIV-1 disease burden is greatest. <i>In vivo</i> vector-based production of bNAbs represents an alternative strategy. We investigated adenovirus serotype 5 (Ad5) and adeno-associated virus serotype 1 (AAV1) vectors to deliver the HIV-1-specific bNAb PGT121 in wild-type and immunocompromised C57BL/6 mice as well as in HIV-1-infected bone marrow-liver-thymus (BLT) humanized mice. Ad5.PGT121 and AAV1.PGT121 produced functional antibody <i>in vivo</i> Ad5.PGT121 produced PGT121 rapidly within 6 h, whereas AAV1.PGT121 produced detectable PGT121 in serum by 72 h. Serum PGT121 levels were rapidly reduced by the generation of anti-PGT121 antibodies in immunocompetent mice but were durably maintained in immunocompromised mice. In HIV-1-infected BLT humanized mice, Ad5.PGT121 resulted in a greater reduction of viral loads than did AAV1.PGT121. Ad5.PGT121 also led to more-sustained virologic control than purified PGT121 IgG. Ad5.PGT121 afforded more rapid, robust, and durable antiviral efficacy than AAV1.PGT121 and purified PGT121 IgG in HIV-1-infected humanized mice. Further evaluation of vector delivery of HIV-1 bNAbs is warranted, although approaches to prevent the generation of antiantibody responses may also be required.<b>IMPORTANCE</b> Broadly neutralizing antibodies (bNAbs) are being explored for HIV-1 prevention and cure strategies, but delivery of purified antibodies may prove challenging. We investigated adenovirus serotype 5 (Ad5) and adeno-associated virus serotype 1 (AAV1) vectors to deliver the HIV-1-specific bNAb PGT121. Ad5.PGT121 afforded more rapid, robust, and durable antiviral efficacy than AAV1.PGT121 and purified PGT121 IgG in HIV-1-infected humanized mice.
The Discovery of Potent, Selective, and Reversible Inhibitors of the House Dust Mite Peptidase Allergen Der p 1: An Innovative Approach to the Treatment of Allergic Asthma (2014)

Blocking the bioactivity of allergens is conceptually attractive as a small-molecule therapy for allergic diseases but has not been attempted previously. Group 1 allergens of house dust mites (HDM) are meaningful targets in this quest because they are globally prevalent and clinically important triggers of allergic asthma. Group 1 HDM allergens are cysteine peptidases whose proteolytic activity triggers essential steps in the allergy cascade. Using the HDM allergen Der p 1 as an archetype for structure-based drug discovery, we have identified a series of novel, reversible inhibitors. Potency and selectivity were manipulated by optimizing drug interactions with enzyme binding pockets, while variation of terminal groups conferred the physicochemical and pharmacokinetic attributes required for inhaled delivery. Studies in animals challenged with the gamut of HDM allergens showed an attenuation of allergic responses by targeting just a single component, namely, Der p 1. Our findings suggest that these inhibitors may be used as novel therapies for allergic asthma.
Temporal task footprinting (2010)

This paper introduces a new representation for describing routine tasks, called temporal task footprints. Routines are characterized by their temporal regularity or rhythm. Temporal pattern analysis (T-patterns) can be used to isolate frequent recurrent patterns in routine tasks that appear repeatedly in the same temporal configuration. Using tf-idf statistics, each task can then be defined in terms of its temporal task footprint, a ranked list of temporal patterns along with their typical frequencies. Experimental evaluations using data of 29 days observing and logging 10 subjects showed that temporal task footprints of application windows, email and document usage outperform decision tree and SVMs in recognizing the subjects' tasks.
Scattering-initiated parametric noise in optical parametric chirped-pulse amplification (2015)

We experimentally study a new kind of parametric noise that is initiated from signal scattering and enhanced through optical parametric amplification. Such scattering-initiated parametric noise behaves similarly to parametric super-fluorescence in the spatial domain, yet is typically much stronger. In the time domain it inherits the chirp of signal pulses and can be well compressed. We demonstrate that scattering-initiated parametric noise has little influence on the pulse contrast but can degrade the energy conversion efficiency substantially.
Multi-Purpose Structure (2003)

The multi-purpose structure is a new proposal (International Patent ApplicationPCT/IL01/01157), enabling a simple and easy way to change the roof covering according to climateconditions, solar radiation, cover cleaning etc. For example in winter crop protection, the structurewith PE covering, may be used as a greenhouse and changing the covering to screen net as ascreen-house during the summer. In order to check the feasibility of the proposed structures aprototype structure was designed and erected. The feasibility study showed a cheap and simplesolution to erect multipurpose structure, which has a simple and easy method of cover replacementas required.
Smart pixel imaging with computational-imaging arrays (2014)

Smart pixel imaging with computational-imaging arrays (SPICA) transfers image plane coding typically realized in the optical architecture to the digital domain of the focal plane array, thereby minimizing signal-to-noise losses associated with static filters or apertures and inherent diffraction concerns. MIT Lincoln Laboratory has been developing digitalpixel focal plane array (DFPA) devices for many years. In this work, we leverage legacy designs modified with new features to realize a computational imaging array (CIA) with advanced pixel-processing capabilities. We briefly review the use of DFPAs for on-chip background removal and image plane filtering. We focus on two digital readout integrated circuits (DROICS) as CIAs for two-dimensional (2D) transient target tracking and three-dimensional (3D) transient target estimation using per-pixel coded-apertures or flutter shutters. This paper describes two DROICs – a SWIR pixelprocessing imager (SWIR-PPI) and a Visible CIA (VISCIA). SWIR-PPI is a DROIC with a 1 kHz global frame rate with a maximum per-pixel shuttering rate of 100 MHz, such that each pixel can be modulated by a time-varying, pseudorandom, and duo-binary signal (+1,-1,0). Combining per-pixel time-domain coding and processing enables 3D (x,y,t) target estimation with limited loss of spatial resolution. We evaluate structured and pseudo-random encoding strategies and employ linear inversion and non-linear inversion using total-variation minimization to estimate a 3D data cube from a single 2D temporally-encoded measurement. The VISCIA DROIC, while low-resolution, has a 6 kHz global frame rate and simultaneously encodes eight periodic or aperiodic transient target signatures at a maximum rate of 50 MHz using eight 8-bit counters. By transferring pixel-based image plane coding to the DROIC and utilizing sophisticated processing, our CIAs enable on-chip temporal super-resolution.