gebhart/patrepeval huggingface dataset:
Sustainable Polymerizations in Recoverable Microemulsions (2010)

Free radical and atom-transfer radical polymerizations were conducted in monomer/ionic liquid microemulsions. After the polymerization and isolation of the resultant polymers, the mixture of the catalyst and ionic liquids (surfactant and continuous phase) can be recovered and reused, thereby dramatically improving the environmental sustainability of such chemical processing. The addition of monomer to recovered ionic liquid mixtures regenerates transparent, stable microemulsions that are ready for the next polymerization cycle upon addition of initiator. The method combines the advantages of IL recycling and microemulsion polymerization and minimizes environmental disposable effects from surfactants and heavy metal ions.
The Kaposi's Sarcoma-Associated Herpesvirus Latency-Associated Nuclear Antigen 1 N Terminus Is Essential for Chromosome Association, DNA Replication, and Episome Persistence (2003)

To persist in latently infected, proliferating cells, Kaposi's sarcoma-associated herpesvirus (KSHV) episomes must replicate and efficiently segregate to progeny nuclei. Episome persistence in uninfected cells requires latency-associated nuclear antigen 1 (LANA1) in trans and cis-acting KSHV terminal repeat (TR) DNA. The LANA1 C terminus binds TR DNA, and LANA1 mediates TR-associated DNA replication in transient assays. LANA1 also concentrates at sites of KSHV TR DNA episomes along mitotic chromosomes, consistent with a tethering role to efficiently segregate episomes to progeny nuclei. LANA1 amino acids 5 to 22 constitute a chromosome association region (Piolot et al., J. Virol. 75:3948-3959, 2001). We now investigate LANA1 residues 5 to 22 with scanning alanine substitutions. Mutations targeting LANA1 5GMR7, 8LRS10, and 11GRS13 eliminated chromosome association, DNA replication, and episome persistence. LANA1 mutated at 14TG15 retained the ability to associate with chromosomes but was partially deficient in DNA replication and episome persistence. These results provide genetic support for a key role of the LANA1 N terminus in chromosome association, LANA1-mediated DNA replication, and episome persistence.
Measuring optical freeform surfaces using a coupled reference data method (2007)

Flat optical freeform surfaces usually possess non-rotational symmetry with a small curvature and lack of strong features for surface alignment. Due to the lack of strong features and small curvature, it is difficult to align the design and measured surfaces for characterizing the surface quality of flat optical freeform surfaces with sub-micrometre form accuracy. The traditional least squares method (LSM) generally produces large errors as there is a lack of strong features as reference for the alignment of the design and measured surfaces. This paper proposes a novel and practical method named the coupled reference data method (CRDM) to evaluate flat optical freeform surfaces with high efficiency and precision in the nanometre scale. The method couples reference data to the workpiece of the freeform surface designed model and the concerning reference features are machined together with the workpiece. By aligning the reference data, the proposed CRDM carries out fast surface matching. This makes good preparation for the next matching optimization which is conducted by the least-squares and minimax zone method. After the precise surface matching, the flat optical freeform surface can be evaluated by 3D form error topography and parameters. As compared with a traditional freeform measurement method such as LSM, it is interesting to note that the accuracy and the stability of the measurement can be significantly enhanced by the CRDM.
Electromagnetic visualization technique for non-metallic inclusions in a melt (1999)

The detection of inclusions in hot melts is of great importance to the manufacturing process as every aspect of quality is affected by the presence of second phases. However, the major dilemma is how to quantitatively determine the level of inclusions. In this paper, we present a theoretical model and preliminary experimental results of a Lorentz-force-based detection system to monitor small inclusions of micron size. The developed technique potentially has a better resolution performance than other on-line methods. The application area includes hot melts of metals and other highly conductive non-transparent fluids. Low-temperature modelling with liquid gallium was used to prove the measurement concept.
Stamping surface-enhanced Raman spectroscopy for label-free, multiplexed, molecular sensing and imaging (2014)

We report stamping surface-enhanced Raman spectroscopy (S-SERS) for label-free, multiplexed, molecular sensing and large-area, high-resolution molecular imaging on a flexible, nonplasmonic surface without solution-phase molecule transfer. In this technique, a polydimethylsiloxane (PDMS) thin film and nanoporous gold disk SERS substrate play the roles as molecule carrier and Raman signal enhancer, respectively. After stamping the SERS substrate onto the PDMS film, SERS measurements can be directly taken from the "sandwiched" target molecules. The performance of S-SERS is evaluated by the detection of Rhodamine 6G, urea, and its mixture with acetaminophen, in a physiologically relevant concentration range, along with the corresponding SERS spectroscopic maps. S-SERS features simple sample preparation, low cost, and high reproducibility, which could lead to SERS-based sensing and imaging for point-of-care and forensics applications.
Epitaxial graphene surface preparation for atomic layer deposition of Al2O3 (2011)

Atomic layer deposition was employed to deposit relatively thick (∼30 nm) aluminum oxide (Al2O3) using trimethylaluminum and triply-distilled H2O precursors onto epitaxial graphene grown on the Si-face of silicon carbide. Ex situ surface conditioning by a simple wet chemistry treatment was used to render the otherwise chemically inert graphene surface more amenable to dielectric deposition. The obtained films show excellent morphology and uniformity over large (∼64 mm2) areas (i.e., the entire sample area), as determined by atomic force microscopy and scanning electron microscopy. X-ray photoelectron spectroscopy revealed a nearly stoichiometric film with reduced impurity content. Moreover, from capacitance-voltage measurements a dielectric constant of ∼7.6 was extracted and a positive Dirac voltage shift of ∼1.0 V was observed. The graphene mobility, as determined by van der Pauw Hall measurements, was not affected by the sequence of surface pretreatment and dielectric deposition.
Method of distributing liquefaction catalysts in solid carbonaceous material (1984)

A method of dispersing a liquefaction catalyst within coal or other carbonaceous solids involves providing a suspension in oil of microcapsules containing the catalyst. An aqueous solution of a catalytic metal salt is emulsified in the water-immiscible oil and the resulting minute droplets microencapsulated in polymeric shells by interfacial polycondensation. The catalyst is subsequently blended and dispersed throughout the powdered carbonaceous material to be liquefied. At liquefaction temperatures the polymeric microcapsules are destroyed and the catalyst converted to minute crystallites in intimate contact with the carbonaceous material. 2 tables.
The quadruple-ridged flared horn: A flexible, multi-octave reflector feed spanning f/0,3 to f/2.5 (2013)

In this paper, we present four quadruple-ridged flared horn designs achieving 6:1 frequency bandwidth with good match and near-constant beamwidth in E- and D-planes. Nominal 10 dB beamwidths of the designs range from 32 to 115 degrees. Such design flexibility makes the quad-ridge horn a very attractive reflector antenna feed candidate, especially for next generation radio telescopes.
Multiresolution broadcast for digital HDTV using joint source/channel coding (1993)

The use of multiresolution (MR) joint source-channel coding in the context of digital terrestrial broadcasting of high-definition television (HDTV) is shown to be an efficient alternative to single-resolution techniques, which suffer from a sharp threshold effect in the fringes of the broadcast area. It is shown how matched multiresolution source and channel coding can provide a stepwise graceful degradation and improve the behavior, in terms of coverage and robustness of the transmission scheme, over systems not specifically designed for broadcast situations. The alternative available for multiresolution transmission through embedded modulation and error correction codes are examined. It is also shown how multiresolution trellis-coded modulation (TCM) can be used to increase coverage range. Coding results and simulations of noisy transmission are presented, and tradeoffs are discussed.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">></ETX>
Automating and optimizing data transfers for many-core coprocessors (2014)

Orchestrating data transfers between CPUs and a coprocessor manually is cumbersome, particularly for multi-dimensional arrays and other data structures with multi-level pointers, which are common in scientific computations. This work describes a system that includes both compile-time and runtime solutions for this problem, with the overarching goal of improving programmer productivity while maintaining performance.
Individual olfactory perception reveals meaningful nonolfactory genetic information (2015)

Each person expresses a potentially unique subset of ∼ 400 different olfactory receptor subtypes. Given that the receptors we express partially determine the odors we smell, it follows that each person may have a unique nose; to capture this, we devised a sensitive test of olfactory perception we termed the "olfactory fingerprint." Olfactory fingerprints relied on matrices of perceived odorant similarity derived from descriptors applied to the odorants. We initially fingerprinted 89 individuals using 28 odors and 54 descriptors. We found that each person had a unique olfactory fingerprint (P < 10(-10)), which was odor specific but descriptor independent. We could identify individuals from this pool using randomly selected sets of 7 odors and 11 descriptors alone. Extrapolating from this data, we determined that using 34 odors and 35 descriptors we could individually identify each of the 7 billion people on earth. Olfactory perception, however, fluctuates over time, calling into question our proposed perceptual readout of presumably stable genetic makeup. To test whether fingerprints remain informative despite this temporal fluctuation, building on the linkage between olfactory receptors and HLA, we hypothesized that olfactory perception may relate to HLA. We obtained olfactory fingerprints and HLA typing for 130 individuals, and found that olfactory fingerprint matching using only four odorants was significantly related to HLA matching (P < 10(-4)), such that olfactory fingerprints can save 32% of HLA tests in a population screen (P < 10(-6)). In conclusion, a precise measure of olfactory perception reveals meaningful nonolfactory genetic information.
Synthesis and Characterization of Self-Healing Poly (Carbonate Urethane) Carbon-Nanotube Composites (2011)

Synthesis of high molar mass polycarbonate polyurethanes using a novel polyol is described. The resulting elastomers demonstrate excellent mechanical properties as well as the capability to re-heal after rupture without the addition of additives or imbedded healing agents. The self-healing functionality is shown to greatly improve with the addition of up to 1% single and multi-walled carbon nanotubes. The interface of the carbon nanotubes and self-healing polymer are probed using Raman techniques and provide an insight into how the self-healing actions are improved with the addition of carbon nanotubes.\nSynthesis of polycarbonate polyurethanes and carbon nanotube composites using a novel casting method is described and compared to the more traditional solution casting method. The dispersion of the carbon nanotubes is evaluated as well as the effect of effective dispersion on the composites through tensile testing, rheometry and hardness testing. Although complete agglomeration avoidance could not be achieved, significant size decrease was observed. Over 200% improvement in tensile strength is shown with conventional solution casting method which is further improved by the described novel solution casting method.\nContact angle measurements on our novel self-healing poly (carbonate urethane) and CNTs composites show that surface energies are drastically changed when CNTs are used. The most revealing finding is that f×svp increases in CNT composite materials from ~30% of the surface energy on average for the samples tested, to ~80%. We have shown that surface free energies increase most likely as a result of exposing hydrogen bonding sites typically found within the bulk in polyurethanes. Our polyurethane differs from traditional polyurethanes in that it has both novel soft segments made from a novel polycarbonate polyol discussed in chapter 2 and relatively soft ¡§hard¡¦ segments resulting from the use of H12MDI, all leading to increased ability to hydrogen bond within the material. The availability of the hydrogen bonding sites is demonstrated by FTIR absorbance bands for associated and unassociated hydrogen bonding sites, which do not seem to be accessible to a large until the PCPU¡¦s surface is disrupted. Once disrupted, the exposed hydrogen bonding sites are able to bond with other bonding sites of adjacent ruptured surfaces. This would explain why our material is non-blocking, e.g. won¡¦t stick to itself, until the surface is ruptured. It would also explain why any two ruptured surfaces of our material will reheal, even if they were not attached previously.
<title>Motion-compensated partition coding</title> (1996)

This paper deals with the coding of the partition information resulting from the segmentation of video sequences. Motion compensation of partition sequences is described as an efficient inter-frame mode of coding. It involves the prediction of the partition, the computation of the partition compensation error, the simplification of the error and its transmission. The major issues and processing steps of a general motion compensation loop for partitions are presented and discussed.
Importance of cellulase cocktails favoring hydrolysis of cellulose (2017)

Depolymerization of lignocellulosic biomass is catalyzed by groups of enzymes whose action is influenced by substrate features and the composition of cellulase preparation. Cellulases contain a mixture of variety of enzymes, whose proportions dictate the saccharification of biomass. In the current study, four cellulase preparation varying in their composition were used to hydrolyze two types of alkali-treated biomass (aqueous ammonia-treated rice straw and sodium hydroxide-treated rice straw) to study the effect on catalytic rate, saccharification yields, and sugar release profile. We found that substrate features affected the extent of saccharification but had minimal effect on the sugar release pattern. In addition, complete hydrolysis to glucose was observed with enzyme preparation having at least a cellobiase units (CBU)/carboxymethyl cellulose (CMC) ratio (>0.15), while a modified enzyme ratio can be used for oligosaccharide synthesis. Thus, cellulase preparation with defined ratios of the three main enzymes can improve the saccharification which is of utmost importance in defining the success of lignocellulose-based economies.
B218 Weld Filler Wire Characterization for Al-Li Alloy 2195 (2000)

NASA Marshall Space Flight Center, Lockheed Martin Space Systems- Michoud Operations, and McCook Metals have developed an aluminum-copper weld filler wire for fusion welding aluminum lithium alloy 2195. The aluminum-copper based weld filler wire has been identified as B218, a McCook Metals designation. B218 is the result of six years of weld filler wire development funded by NASA, Lockheed Martin, and McCook Metals. The filler wire chemistry was developed to produce enhanced 2195 weld and repair weld mechanical properties over the 4043 aluminum-silicon weld filler wire, which is currently used to weld 2195 on the Super Lightweight External Tank for the NASA Space Shuttle Program. An initial characterization was performed consisting of a repair weld evaluation using B218 and 4043 weld filler wires. The testing involved room temperature and cryogenic repair weld tensile testing along with fracture toughness testing. From the testing, B218 weld filler wire produce enhanced repair weld tensile strength, ductility, and fracture properties over 4043. B218 weld filler wire has proved to be a superior weld filler wire for welding aluminum lithium alloy 2195 over 4043.
Ultrasonic Transducer for High Resolution Imaging (2019)

In recent years, there has been a growing interest in piezoelectric micromachined ultrasonic transducers (PMUTs) as an alternative to conventional transducers for ultrasound imaging. These transducers offer many advantages in terms of cost, size, and efficiency. This is a summary of two recent publications in the field.
Quasi-phase matching and characterization of high-order harmonic generation in hollow waveguides using counterpropagating light (2008)

We review recent experimental and theoretical work on the use of counterpropagating light to enhance high-order harmonic generation through all-optical quasi-phase matching. Also presented is a new technique for measuring the coherence of high harmonics in the nonlinear medium. This information is crucial for understanding the process of harmonic generation over extended distances, as well as for effective enhancement using quasi-phase matching techniques.
A Live-Attenuated Chimeric Porcine Circovirus Type 2 (PCV2) Vaccine Is Transmitted to Contact Pigs but Is Not Upregulated by Concurrent Infection with Porcine Parvovirus (PPV) and Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) and Is Efficacious in a PCV2b-PRRSV-PPV Challenge Model (2011)

The live chimeric porcine circovirus type 2 (PCV2) vaccine with the capsid gene of the emerging subtype 2b cloned in the genomic backbone of the nonpathogenic PCV1 is attenuated in vivo and induces protective immunity against PCV2. To further determine the safety and efficacy of this experimental vaccine, we tested for evidence of pig-to-pig transmission by commingling nonvaccinated and vaccinated pigs, determined potential upregulation by simultaneous vaccination and infection with porcine parvovirus (PPV) and porcine reproductive and respiratory syndrome virus (PRRSV), and determined vaccine efficacy by challenging pigs 4 weeks after vaccination with PCV2b, PRRSV, and PPV. Forty-six 21-day-old, PCV2-naïve pigs were randomly assigned to one of six groups. Twenty-nine of 46 pigs were challenged with PCV2b, PRRSV, and PPV at day 28, 8/46 remained nonvaccinated and nonchallenged and served as negative controls, and 9/46 remained nonchallenged and served as vaccination controls. All animals were necropsied at day 49. PCV1-PCV2 viremia was detected in nonvaccinated contact pigs commingled with vaccinated pigs, indicating pig-to-pig transmission; however, PCV1-PCV2 DNA levels remained low in all vaccinated and contact pigs regardless of concurrent infection. Finally, vaccination 28 days before challenge resulted in significantly (P < 0.05) decreased amounts of PCV2 in tissues and sera and significantly (P < 0.05) reduced macroscopic and microscopic lesions. The results of this study indicate that the experimental live-attenuated chimeric PCV2 vaccine, although transmissible to contact pigs, remains attenuated in pigs concurrently infected with PRRSV and PPV and induces protective immunity against PCV2b when it is administered 28 days before PCV2 exposure.
Equal phase slope metamaterial transmission lines (2012)

A methodology is presented here for designing a family of various length metamaterial transmission lines (MTM-TL), all having equal phase and phase slopes. These MTM lines are designed from different combinations of single CRLH unit cells that are the same physical length, but have different phase and phase slopes associated with each. By correctly combining the phase and phase slopes of each of these unit cells together, a MTM-TL line of various lengths can be achieved with a desired phase response. The results presented here will show various MTM-TL lengths can be designed with the same phase and phase slope as a conventional microstrip TL of fixed length. The significance of these results indicate the possibility for engineering MTM-TLs that can occupy a smaller footprint than conventional TLs with increased phase bandwidth for tightly fitting phase shifting networks.
Characterization of human cellular gamma-glutamyl hydrolase. (1998)

A previously identified cDNA encoding a human gamma-glutamyl hydrolase was expressed in a baculovirus system. The expressed protein had molecular mass of 37 kDa. Treatment of the protein with PNGase F produced a protein of molecular mass of 30 kDa, indicating that the protein contained asparagine-linked glycosylation. Sequence analysis of the expressed protein indicated that a 24-amino-acid signal peptide had been removed. A polyclonal antibody to the expressed enzyme was used in Western blot analysis of partially purified lysates of HL-60 promyeloid leukemia cells and MCF-7 breast cancer cells. The HL-60 and MCF-7 enzymes appeared as two closely spaced bands with a molecular mass of 37 kDa. Treatment of the HL-60 enzyme with PNGase F produced a protein with a molecular mass of 30 kDa. The activities of the expressed enzyme and the enzyme from HL-60 cells were similar on methotrexate polyglutamates. Methotrexate-gamma-Glu is a poor substrate for the human enzyme relative to methotrexate gamma-Glu2-5. During hydrolysis of methotrexate-gamma-Glu4, all possible pterin-containing cleavage products (methotrexate and methotrexate-gamma-Glu1-3) appear. The results demonstrated that the human enzyme cleaves both the ultimate and penultimate gamma-linkages of methotrexate polyglutamates. Glutamate was released as either glutamic acid or gamma-Glu2. Longer chain species of gamma-Glun>2 were not observed. Inhibition by iodoacetic acid suggested that both the expressed enzyme and the HL-60 enzyme may contain a catalytically essential cysteine. These results indicate that the identified cDNA encodes the intracellular gamma-glutamyl hydrolase found in a variety of human tumor cells and that the baculovirus-expressed enzyme is a suitable model for further structural and enzymatic studies.
Expression analysis of the endogenous Zscan4 locus and its coding proteins in mouse ES cells and preimplantation embryos (2016)

Mouse Zinc finger and SCAN domain containing 4 (Zscan4) is encoded in multiple copies of Zscan4 genes, which are expressed in late two-cell stage preimplantation embryos and in 1-5% of the embryonic stem (ES) cell population at a given time. Due to the highly identical nucleotide sequences of multiple copies of Zscan4 paralogs and pseudogenes in the mouse Zscan4 genomic cluster, previous analyses have been done using exogenous transgenes under the regulation of Zscan4c promoter. In this manuscript, we generated knock-in mouse ES cell lines and mouse lines, in which the expression of endogenous Zscan4c, one of the Zscan4 genes, can be specifically monitored with a green fluorescent protein variant, Emerald. Interestingly, we found that only ∼30% of Zscan4-immunopositive ES cells were Emerald positive, suggesting that even when the Zscan4 locus is active, not all Zscan4 genes are expressed synchronously. We also carried out mass spectrometry of protein complexes associated with endogenous Zscan4 proteins. Taken together, our genetic engineering at an endogenous Zscan4c gene provides the first clue for the expression and function of each gene copy of Zscan4 locus in a physiological context.