gebhart/patrepeval huggingface dataset:
A finite element analysis of novel vented dental abutment geometries for cement‐retained crown restorations (2016)

Recent literature indicates that the long-term success of dental implants is, in part, attributed to how dental crowns are attached to their associated implants. The commonly utilized method for crown attachment - cementation, has been criticized because of recent links between residual cement and peri-implant disease. Residual cement extrusion from crown-abutment margins post-crown seating is a growing concern. This study aimed at (1) identifying key abutment features, which would improve dental cement flow characteristics, and (2) understanding how these features would impact the mechanical stability of the abutment under functional loads. Computational fluid dynamic modeling was used to evaluate cement flow in novel abutment geometries. These models were then evaluated using 3D-printed surrogate models. Finite element analysis also provided an understanding of how the mechanical stability of these abutments was altered after key features were incorporated into the geometry. The findings demonstrated that the key features involved in improved venting of the abutment during crown seating were (1) addition of vents, (2) diameter of the vents, (3) location of the vents, (4) addition of a plastic screw insert, and (5) thickness of the abutment wall. This study culminated in a novel design for a vented abutment consisting of 8 vents located radially around the abutment neck-margin plus a plastic insert to guide the cement during seating and provide retrievability to the abutment system.Venting of the dental abutment has been shown to decrease the risk of undetected residual dental cement post-cement-retained crown seating. This article will utilize a finite element analysis approach toward optimizing dental abutment designs for improved dental cement venting. Features investigated include (1) addition of vents, (2) diameter of vents, (3) location of vents, (4) addition of plastic screw insert, and (5) thickness of abutment wall.
Thermal properties of organic and modified inorganic aerogels (1992)

Aerogels are open-cell foams that have already been shown to be among the best thermal insulating solid materials known. Improvements in the thermal insulating properties of aerogels are possible by synthesizing new organic varieties, by using additives within existing aerogel matrix, and by optimizing their nanostructures. We discuss these approaches and give some examples of aerogels which demonstrate the improvements.
Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform (2016)

Complex samples benefit from multidimensional measurements where higher resolution enables more complete characterization of biological and environmental systems. To address this challenge, we developed a drift tube-based ion mobility spectrometry-Orbitrap mass spectrometer (IMS-Orbitrap MS) platform. To circumvent the time scale disparity between the fast IMS separation and the much slower Orbitrap MS acquisition, we utilized a dual gate and pseudorandom sequences to multiplex the injection of ions and allow operation in signal averaging (SA), single multiplexing (SM), and double multiplexing (DM) IMS modes to optimize the signal-to-noise ratio of the measurements. For the SM measurements, a previously developed algorithm was used to reconstruct the IMS data. A new algorithm was developed for the DM analyses involving a two-step process that first recovers the SM data and then decodes the SM data. The algorithm also performs multiple refining procedures to minimize demultiplexing artifacts. The new IMS-Orbitrap MS platform was demonstrated by the analysis of proteomic and petroleum samples, where the integration of IMS and high mass resolution proved essential for accurate assignment of molecular formulas.
Dielectric Coagulometry: A New Approach To Estimate Venous Thrombosis Risk (2010)

We present dielectric coagulometry as a new technique to estimate the risk of venous thrombosis by measuring the permittivity change associated with the blood coagulation process. The method was first tested for a simple system of animal erythrocytes suspended in fibrinogen solution, where the coagulation rate was controlled by changing the amount of thrombin added to the suspension. Second, the method was applied to a more realistic system of human whole blood, and the inherent coagulation process was monitored without artificial acceleration by a coagulation initiator. The time dependence of the permittivity at a frequency around 1 MHz showed a distinct peak at a time that corresponds to the clotting time. Our theoretical modeling revealed that the evolution of heterogeneity and the sedimentation in the system cause the peak of the permittivity.
Partially coherent phase imaging with simultaneous source recovery (2014)

We propose a new method for phase retrieval that uses partially coherent illumination created by any arbitrary source shape in Köhler geometry. Using a stack of defocused intensity images, we recover not only the phase and amplitude of the sample, but also an estimate of the unknown source shape, which describes the spatial coherence of the illumination. Our algorithm uses a Kalman filtering approach which is fast, accurate and robust to noise. The method is experimentally simple and flexible, so should find use in optical, electron, X-ray and other phase imaging systems which employ partially coherent light. We provide an experimental demonstration in an optical microscope with various condenser apertures.
Conceptual Integration Studies of Localized Active Flow Control on the Wing of a Commercial Aircraft (2023)

View Video Presentation: https://doi.org/10.2514/6.2023-0657.vid A study of conceptual integration and performance of localized active flow control technology onto wings of short-to-medium-range project passenger airplanes is summarized. Using predicted aerodynamic performance improvement opportunities on a computational fluid dynamics reference aircraft, this paper presents the estimated performance opportunities for conceptual implementation of studied wing localized active flow control technology for low-speed (takeoff and landing) application on a Project Research Aircraft configuration. Using conceptual active flow control systems and structural integration weight penalties for studied concepts, potential relevant net performance benefits can be obtained with reliable active flow control in takeoff and landing. The conceptual integration study identifies potential localized wing active flow control application opportunities for high-lift conditions using energy sources available on modern aircraft. Material benefits are estimated for takeoff and landing configurations for selected localized wing active flow control applications. The study concluded that substantial low-speed Maximum Lift and Lift/Drag related performance improvements may be possible with localized wing high-lift active flow control systems powered by auxiliary power unit, engine bleed, or electrical compressors - with due consideration of integration and weight impacts as well as availability requirements of such systems.
<title>Class and channel condition-based scheduler for EDGE/GPRS</title> (2001)

The efficient management of the radio resource of a 3-G system is important from an operator's perspective. This, however, cannot be the only concern when quality of service (QoS) negotiations have been made for various users and the operator has to uphold these. This leads to a fairness objective that the operator has to keep in mind. In this paper we outline a scheme to perform packet-level scheduling and resource allocation at the wireless node that takes into account the notions of both efficiency and fairness and presents a means to explore the trade-off between these two notions. As a part of this scheme we see the scheduling problem as deciding not just the packet transmission schedule but also the power allocation, the modulation and coding scheme allocation and the spreading code determination since the latter three directly influence the radio resources consumed. Using a utility maximization formulation based on the data-rates that the mobiles can transmit at, we decide on the weights for a weighted proportionally fair allocation based scheduling algorithm. We also show how one can adapt the weights and the algorithm for a time-varying channel. We conclude with a simulation based performance analysis for infinitely-backlogged sources and TCP sources on an EDGE system.
RFID Authentication, Efficient Proactive Information Security within Computational Security (2009)

We consider repeated communication sessions between a RFID Tag (e.g., Radio Frequency Identification, RFID Tag) and a RFID Verifier. A proactive information theoretic security scheme is proposed. The scheme is based on the assumption that the information exchanged during at least one of every n successive communication sessions is not exposed to an adversary. The Tag and the Verifier maintain a vector of n entries that is repeatedly refreshed by pairwise xoring entries, with a new vector of n entries that is randomly chosen by the Tag and sent to the Verifier as a part of each communication session. The general case in which the adversary does not listen in k > 0 sessions among any n successive communication sessions is also considered. A lower bound of n(k+1) for the number of random numbers used during any n successive communication sessions is proven. In other words, we prove that an algorithm must use at least n(k+1) new random numbers during any n successive communication sessions. Then a randomized scheme that uses only O(n log n) new random numbers is presented. A computational secure scheme which is based on the information theoretic secure scheme is used to ensure that even in the case that the adversary listens in all the information exchanges, the communication between the Tag and the Verifier is secure.
Attenuation correction of PET cardiac data with low‐dose average CT in PET/CT (2006)

We proposed a low-dose average computer tomography (ACT) for attenuation correction (AC) of the PET cardiac data in PET/CT. The ACT was obtained from a cine CT scan of over one breath cycle per couch position while the patient was free breathing. We applied this technique on four patients who underwent tumor imaging with 18F-FDG in PET/CT, whose PET data showed high uptake of 18F-FDG in the heart and whose CT and PET data had misregistration. All four patients did not have known myocardiac infarction or ischemia. The patients were injected with 555-740 MBq of 18F-FDG and scanned 1 h after injection. The helical CT (HCT) data were acquired in 16 s for the coverage of 100 cm. The PET acquisition was 3 min per bed of 15 cm. The duration of cine CT acquisition per 2 cm was 5.9 s. We used a fast gantry rotation cycle time of 0.5 s to minimize motion induced reconstruction artifacts in the cine CT images, which were averaged to become the ACT images for AC of the PET data. The radiation dose was about 5 mGy for 5.9 s cine duration. The selection of 5.9 s was based on our analysis of the respiratory signals of 600 patients; 87% of the patients had average breath cycles of less than 6 s and 90% had standard deviations of less than 1 s in the period of breath cycle. In all four patient studies, registrations between the CT and the PET data were improved. An increase of average uptake in the anterior and the lateral walls up to 48% and a decrease of average uptake in the septal and the inferior walls up to 16% with ACT were observed. We also compared ACT and conventional slow scan CT (SSCT) of 4 s duration in one patient study and found ACT was better than SSCT in depicting average respiratory motion and the SSCT images showed motion-induced reconstruction artifacts. In conclusion, low-dose ACT improved registration of the CT and the PET data in the heart region in our study of four patients. ACT was superior than SSCT for depicting average respiration motion in a patient study.
Screening and evolution of a novel protist xylose isomerase from the termite Reticulitermes speratus for efficient xylose fermentation in Saccharomyces cerevisiae (2017)

A novel XI gene conferring superior xylose utilization in <i>S. cerevisiae</i> was successfully isolated from the protists in the termite hindgut. Isolation of this XI gene and identification of the point mutation described in this study might contribute to improving the productivity of industrial bioethanol.
A method for the accelerated simulation of micro-embossed topographies in thermoplastic polymers (2010)

Users of hot micro-embossing often wish to simulate numerically the topographies produced by the process. We have previously demonstrated a fast simulation technique that encapsulates the embossed layer's viscoelastic properties using the response of its surface topography to a mechanical impulse applied at a single location. The simulated topography is the convolution of this impulse response with an iteratively found stamp–polymer contact-pressure distribution. Here, we show how the simulation speed can be radically increased by abstracting feature-rich embossing-stamp designs. The stamp is divided into a grid of regions, each characterized by feature shape, pitch and areal density. The simulation finds a contact-pressure distribution at the resolution of the grid, from which the completeness of pattern replication is predicted. For a 25 mm square device design containing microfluidic features down to 5 µm diameter, simulation can be completed within 10 s, as opposed to the 104 s expected if each stamp feature were represented individually. We verify the accuracy of our simulation procedure by comparison with embossing experiments. We also describe a way of abstracting designs at multiple levels of spatial resolution, further accelerating the simulation of patterns whose detail is contained in a small proportion of their area.
Surface-Enhanced Raman Scattering of Rat Tissues (2009)

Surface-enhanced Raman scattering (SERS) is proven to be a powerful tool for investigation of biological structures. In this study, tissues obtained from different rat organs are examined using SERS. The tissue samples are crushed with a pestle after sudden freezing in liquid nitrogen and mixed with a concentrated colloidal silver nanoparticle suspension. The reproducibility of SERS spectra acquired from several tissue samples from different organs is demonstrated. The collected spectra are comparatively evaluated based on the physiological function of the organ from which the tissue is obtained. The spectra from the tissues show significant differences and indicate that they can be used for tissue characterization and differentiation. The identification of the origins of the bands on the spectra is also attempted. This study suggests that SERS can be used to monitor the changes at the molecular level during metabolic changes in an organ or tissue as a result of a disease or another cause.
Repression of Activator-Mediated Transcription by Herpes Simplex Virus ICP4 via a Mechanism Involving Interactions with the Basal Transcription Factors TATA-Binding Protein and TFIIB (1995)

Infected-cell polypeptide 4 (ICP4) of herpes simplex virus is both a transcriptional activator and a repressor. It has been previously demonstrated that both SP1-activated transcription and USF-activated transcription are repressed by ICP4 without affecting basal transcription (B. Gu, R. Rivera-Gonzalez, C. A. Smith, and N. A. DeLuca, Proc. Natl. Acad. Sci. USA 90:9528-9532, 1993; R. Rivera-Gonzalez, A. N. Imbalzano, B. Gu, and N.A. DeLuca, Virology 202:550-564, 1994). In this study, it was found that ICP4 repressed the activation function of two other activators, VP16 and ICP4 itself, in vitro. ICP4 inhibited transcription by interfering with the formation of transcription initiation complexes without affecting transcription elongation. Repression of activator function required that an ICP4 DNA binding site was present in one orientation within approximately 45 bp 3' to the TATA box. DNA binding by ICP4 was necessary but not sufficient for repression. ICP4 has been shown to form tripartite complexes cooperatively with the TATA box-binding protein and TFIIB on DNA containing an ICP4 binding site and a TATA box (C. A. Smith, P. Bates, R. Rivera-Gonzalez, B. Gu, and N. DeLuca, J. Virol. 67:4676-4687, 1993). A region of ICP4 that enables the molecule to form tripartite complexes was also required in addition to the DNA binding domain for efficient repression. Moreover, repression was observed only when the ICP4 binding site was in a position that resulted in the formation of tripartite complexes. Together, the data suggest that ICP4 represses transcription by binding to DNA in a precise way so that it may interact with the basal transcription complex and inhibit some general step involved in the function of activators. The steps or interactions involved in transcriptional activation that are inhibited by ICP4 are discussed.
Boundary-Layer-Ingesting Inlet Flow Control (2006)

An experimental study was conducted to provide the first demonstration of an active flow control system for a flush-mounted inlet with significant boundary-layer-ingestion in transonic flow conditions. The effectiveness of the flow control in reducing the circumferential distortion at the engine fan-face location was assessed using a 2.5%-scale model of a boundary-layer-ingesting offset diffusing inlet. The inlet was flush mounted to the tunnel wall and ingested a large boundary layer with a boundary-layer-to-inlet height ratio of 35%. Different jet distribution patterns and jet mass flow rates were used in the inlet to control distortion. A vane configuration was also tested. Finally a hybrid vane/jet configuration was tested leveraging strengths of both types of devices. Measurements were made of the onset boundary layer, the duct surface static pressures, and the mass flow rates through the duct and the flow control actuators. The distortion and pressure recovery were measured at the aerodynamic interface plane. The data show that control jets and vanes reduce circumferential distortion to acceptable levels. The point-design vane configuration produced higher distortion levels at off-design settings. The hybrid vane/jet flow control configuration reduced the off-design distortion levels to acceptable ones and used less than 0.5% of the inlet mass flow to supply the jets.
Detection and quantification of Hepatobacter penaei bacteria (NHPB) by new PCR and quantitative PCR assays (2018)

Necrotizing hepatopancreatitis (NHP) is a bacterial disease caused by a Gram-negative bacterium classified as Hepatobacter penaei. H. penaei affects cultured penaeid shrimp in several countries from the western hemisphere, including the USA, and most Central and South American countries that farm shrimp. The current PCR and quantitative PCR (qPCR) assays based on the amplification of the 16S rRNA gene developed at the University of Arizona Aquaculture Pathology Laboratory (UAZ-APL) are the only techniques recommended in the World Organisation for Animal Health (OIE) manual for H. penaei detection. Although these techniques are quite sensitive and specific to H. penaei detection in shrimp, in recent years, rare non-specific amplifications have been observed in the end-point PCR when screening for H. penaei in Artemia cyst samples submitted to the UAZ-APL. To avoid these non-specific amplifications, new end-point PCR and qPCR assays were developed based on the H. penaei flagella gene, flgE. Unlike the current OIE methods, the new H. penaei PCR assay did not provide any non-specific amplification, and the qPCR assay had a detection limit of 100 copies and a log-linear range up to 108 copies. Because the previous PCR-based assay using the 16S rRNA was showing non-specific amplification, the new non-specific product of around 400 bp was sequenced to determine its identity. A phylogenetic analysis revealed 2 clusters of H. penaei: Ecuador and Central-North America. This information will enable us to determine the genetic diversity and possible origin of H. penaei and emphasizes the need to evaluate H. penaei PCR detection methods to avoid inaccurate detection of H. penaei.
Simultaneous wireless power transfer and communication to chip-scale devices (2017)

This paper reports a 2.48 GHz tri-coil and rectifier design implemented in a system that demonstrates simultaneous wireless power transfer and communication to a 0.1 mm by 0.1 mm coil. The tri-coil link and rectifier successfully rectified and demodulated a 20 dBm amplitude-shift keyed (ASK) RF signal modulated at a rate of 1 Mb/s. Additionally, a 5.7 GHz tri-coil link was fabricated to validate the frequency scalability of this technology platform for other unlicensed bands and was measured in a customized experimental testbed to account for the effects of lateral misalignment between coils. The 5.7 GHz tri-coil design had a measured peak RF power transfer efficiency of −29 dB with a vertical separation of 1 mm, which is ten times the load coil diameter.
Enhanced Vibration Energy Harvesting Through Multilayer Textured Pb(Mg1/3Nb2/3)O3–PbZrO3–PbTiO3 Piezoelectric Ceramics (2014)

Abstract High-performance low-cost multilayer textured Pb(Mg
CLAC Binds to Amyloid β Peptides through the Positively Charged Amino Acid Cluster within the Collagenous Domain 1 and Inhibits Formation of Amyloid Fibrils (2004)

CLAC (collagenous Alzheimer amyloid plaque component) is a proteolytic fragment derived from a novel membrane-bound collagen, CLAC-P/collagen type XXV, that deposits in senile plaques associated with amyloid beta peptides (Abeta) in the brains of patients with Alzheimer's disease. We previously showed that CLAC binds to the fibrillized form of Abeta in vitro, although the mechanism and the subdomains that mediate interaction of CLAC with Abeta as well as the effect of binding of CLAC on amyloid fibril formation remain unknown. Here we show that the collagenous domain 1 of CLAC, which is rich in positively charged amino acid residues, mediates its interaction with Abeta and that this binding is mediated by an electrostatic interaction and requires formation of the triple helix structure of CLAC. The soluble form of CLAC purified from the media of cells transfected with CLAC-P inhibited fibrillization of Abeta in vitro, especially in its elongation phase. These results suggest the anti-amyloidogenic roles of CLAC in the pathophysiology of Alzheimer's disease.
Precise control of the size and noise of solid-state nanopores using high electric fields (2012)

We present a methodology for preparing silicon nitride nanopores that provides in situ control of size with sub-nanometer precision while simultaneously reducing electrical noise by up to three orders of magnitude through the cyclic application of high electric fields in an aqueous environment. Over 90% of nanopores treated with this technique display desirable noise characteristics and readily exhibit translocation of double-stranded DNA molecules. Furthermore, previously used nanopores with degraded electrical properties can be rejuvenated and used for further single-molecule experiments.
Frequency-Coded Chemical Sensors (2007)

We have developed a new method to intelligently sample analytes and introduce the analytes to sensors. The method automatically adjusts sampling duration according to the sensors' response to the analytes and converts the amplitude of the sensor output to a frequency output, giving us another opportunity to reduce noise in the signal. It also addresses some of the common sensor issues such as response time, saturation, chemical dynamic range, and sensor protection, saving precious detection time, protecting sensors, and enabling sensitive sensors built for low-concentration detection to be used for high-concentration detection as well. We have put together a system using a tuning fork chemical sensor as a sample sensor to demonstrate the feasibility and benefits of the new sensing technique.