gebhart/patrepeval huggingface dataset:
Automatic reassembly of document fragments via context based statistical models (2004)

Reassembly of fragmented objects from a collection of randomly mixed fragments is a common problem in classical forensics. We address the digital forensic equivalent, i.e., reassembly of document fragments, using statistical modelling tools applied in data compression. We propose a general process model for automatically analyzing a collection fragments to reconstruct the original document by placing the fragments in proper order. Probabilities are assigned to the likelihood that two given fragments are adjacent in the original using context modelling techniques in data compression. The problem of finding the optimal ordering is shown to be equivalent to finding a maximum weight Hamiltonian path in a complete graph. Heuristics are designed and explored and implementation results provided which demonstrate the validity of the proposed technique.
Holistic aggregates in a networked world (2005)

While traditional database systems optimize for performance on one-shot queries, emerging large-scale monitoring applications require continuous tracking of complex aggregates and data-distribution summaries over collections of physically-distributed streams. Thus, effective solutions have to be simultaneously space efficient (at each remote site), communication efficient (across the underlying communication network), and provide continuous, guaranteed-quality estimates. In this paper, we propose novel algorithmic solutions for the problem of continuously tracking complex holistic aggregates in such a distributed-streams setting --- our primary focus is on approximate quantile summaries, but our approach is more broadly applicable and can handle other holistic-aggregate functions (e.g., "heavy-hitters" queries). We present the first known distributed-tracking schemes for maintaining accurate quantile estimates with provable approximation guarantees, while simultaneously optimizing the storage space at each remote site as well as the communication cost across the network. In a nutshell, our algorithms employ a combination of local tracking at remote sites and simple prediction models for local site behavior in order to produce highly communication- and space-efficient solutions. We perform extensive experiments with real and synthetic data to explore the various tradeoffs and understand the role of prediction models in our schemes. The results clearly validate our approach, revealing significant savings over naive solutions as well as our analytical worst-case guarantees.
ChemInform Abstract: Recycling of Carbon Dioxide to Methanol and Derived Products — Closing the Loop (2015)

Abstract Review: 595 refs.
Ferroelectric properties of sol-gel derived Ca modified PbZr0.52Ti0.48O3 films (2005)

In this letter, we report the ferroelectric properties and leakage current characteristics of Ca modified PbZr0.52Ti0.48O3 (PCZT) films prepared by a sol-gel process. The PCZT film of thickness ∼1μm shows excellent ferroelectric properties in terms of large remnant polarization of ∼30μC∕cm2 (Ec∼200kV∕cm), high saturation polarization of about 51μC∕cm2 for an applied field of 915kV∕cm, fatigue free characteristics up to ⩾1010 switching cycles, and a low leakage current density of 5×10−8A∕cm2 at 100kV∕cm. X-ray diffraction, atomic force, and scanning electron microscope investigations indicate that PCZT films deposited on PbTiO3 layers exhibit a dense, well-crystallized microstructure having random orientations and a rather smooth surface morphology.
Recent Advances in Near-Field-Based Small Form Factor Optical Storage (2007)

A review of small form factor optical storage (media diameters less than 50 mm) is presented with emphasis on the development of near-field technology. The current efforts are summarized together with the commercially desired attributes. The results of the examination of gallium phosphide (GaP) and diamond solid immersion lenses in conjunction with evanescent coupling are presented. A polarization-based gap error signal (GES) technique for air-gap servocontrol is described. Results indicate that the method is relatively insensitive to contamination on the surface and can resolve 100-nm surface features. A 50-GB 120-mm read-only memory (ROM) disc was successfully read and the results indicate that a 10-GB 32-mm diameter RW/ROM optical disc based on 650-nm lasers should be feasible
Layer extraction from multiple images containing reflections and transparency (2002)

Many natural images contain reflections and transparency, i.e., they contain mixtures of reflected and transmitted light. When viewed from a moving camera, these appear as the superposition of component layer images moving relative to each other. The problem of multiple motion recovery has been previously studied by a number of researchers. However no one has yet demonstrated how to accurately recover the component images themselves. In this paper we develop an optimal approach to recovering layer images and their associated motions from an arbitrary number of composite images. We develop two different techniques for estimating the component layer images given known motion estimates. The first approach uses constrained least squares to recover the layer images. The second approach iteratively refines lower and upper bounds on the layer images using two novel compositing operations, namely minimum- and maximum-composites of aligned images. We combine these layer extraction techniques with a dominant motion estimator and a subsequent motion refinement stage. This results in a completely automated system that recovers transparent images and motions from a collection of input images.
High Sensitivity Performance Monitoring and Impairment Compensation VIA Two-Photon Absorption in a Photon-Counting Silicon Avalanche Photodiode (2002)

Perfomance monitorng and realtime compensation of ultra low power 10 Gb/s signals at 1.5 μm is investigated using two-photon absorption in a photon-counting silicon avalanche photodiode. We analyze distortions from dispersion, PMD, and OSNR.
Patient‐individual local SAR determination: In vivo measurements and numerical validation (2011)

Tissue heating during magnetic resonance measurements is a potential hazard at high-field MRI, and particularly, in the framework of parallel radiofrequency transmission. The heating is directly related to the radiofrequency energy absorbed during an magnetic resonance examination, that is, the specific absorption rate (SAR). SAR is a pivotal parameter in MRI safety regulations, requiring reliable estimation methods. Currently used methods are usually based on models which are neither patient-specific nor taken into account patient position and posture, which typically leads to the need for large safety margins. In this work, a novel approach is presented, which measures local SAR in a patient-specific manner. Using a specific formulation of Maxwell's equations, the local SAR is estimated via postprocessing of the complex transmit sensitivity of the radiofrequency antenna involved. The approximations involved in the proposed method are investigated. The presented approach yields a sufficiently accurate and patient-specific local SAR measurement of the brain within a scan time of less than 5 min.
Highly transparent and writable wood all-cellulose hybrid nanostructured paper (2013)

Paper, as an inexpensive substrate for flexible electronics and energy devices, has garnered great attention because of its abundance, biodegradability, renewability and sustainability. However, the intrinsic opacity and higher roughness of regular paper greatly restricts further applications. One promising method is to use cellulose nanofibers (CNs) to fabricate nanopaper with a high optical transmittance and excellent smoothness, but there are still some challenges facing nanopaper substrates, such as high-energy consumption to extract nanofibers and the time-consuming process to prepare nanopaper. We design a bilayer hybrid paper using unbeaten wood fibers and CNs with a papermaking technique, which achieves a high optical transmittance and superior smoothness while remaining less expensive than nanopaper and useful as a writable surface. The first transparent paper touchscreen with an excellent anti-glare effect in bright environments is demonstrated using our novel transparent and conductive hybrid paper as the flexible electrode.
Optically pumped cerium-doped LiSrAlF.sub.6 and LiCaAlF.sub.6 (1996)

Ce.sup.3+ -doped LiSrAlF.sub.6 crystals are pumped by ultraviolet light which is polarized along the c axis of the crystals to effectively energize the laser system. In one embodiment, the polarized fourth harmonic light output from a conventional Nd:YAG laser operating at 266 nm is arranged to pump Ce:LiSrAlF.sub.6 with the pump light polarized along the c axis of the crystal. The Ce:LiSrAlF.sub.6 crystal may be placed in a laser cavity for generating tunable coherent ultraviolet radiation in the range of 280-320 nm. Additionally, Ce-doped crystals possessing the LiSrAlF.sub.6 type of chemical formula, e.g. Ce-doped LiCaAlF.sub.6 and LiSrGaF.sub.6, can be used. Alternative pump sources include an ultraviolet-capable krypton or argon laser, or ultraviolet emitting flashlamps. The polarization of the pump light will impact operation. The laser system will operate efficiently when light in the 280-320 nm gain region is injected or recirculated in the system such that the beam is also polarized along the c axis of the crystal. The Ce:LiSrAlF.sub.6 laser system can be configured to generate ultrashort pulses, and it may be used to pump other devices, such as an optical parametric oscillator.
Effective Small Interfering RNA Therapy to Treat CLCN7-dependent Autosomal Dominant Osteopetrosis Type 2 (2015)

In about 70% of patients affected by autosomal dominant osteopetrosis type 2 (ADO2), osteoclast activity is reduced by heterozygous mutations of the CLCN7 gene, encoding the ClC-7 chloride/hydrogen antiporter. CLCN7(G215R)-, CLCN7(R767W)-, and CLCN7(R286W)-specific siRNAs silenced transfected mutant mRNA/EGFP in HEK293 cells, in RAW264.7 cells and in human osteoclasts, with no change of CLCN7(WT) mRNA and no effect of scrambled siRNA on the mutant transcripts. Osteoclasts from Clcn7(G213R) ADO2 mice showed reduced bone resorption, a condition rescued by Clcn7(G213R)-specific siRNA. Treatment of ADO2 mice with Clcn7(G213R)-specific siRNA induced increase of bone resorption variables and decrease of trabecular bone mass, leading to an overall improvement of the osteopetrotic bone phenotype. Treatment did not induce overt adverse effects and was effective also with siRNAs specific for other mutants. These results demonstrate that a siRNA-based experimental treatment of ADO2 is feasible, and underscore a translational impact for future strategy to cure this therapeutically neglected form of osteopetrosis.
Microfluidic engineering of exosomes: editing cellular messages for precision therapeutics (2018)

Study of extracellular vesicles (EVs), particularly exosomes, holds significant promise; however, it is technically challenging to define these small and molecularly diverse nanovesicles. With intrinsic molecular payload and biodegradability, molecular engineering of exosomes opens new avenues for mediating cellular responses and developing novel nano-delivery systems in precision therapeutics. Microfluidic lab-on-chip technology is playing pivotal roles in this emerging field. In this review, we have examined scientific advancements of microfluidic technology for engineering exosomes and assessed future applications and perspectives in developing precision therapeutics; this can serve the community via identification of potential new research areas or technologies that are urgently needed in precision therapeutics.
A new binary iterative LDPC decoding algorithm (2008)

We introduce a new binary message-passing decoding method for low-density parity-check (LDPC) codes. The proposed decoding principle does not require the degree information of variable nodes and can be applied to both timeinvariant and time-variant decoding algorithms. We present the extrinsic error probability analysis and decoding threshold optimization for the new decoding method in both time-invariant and time-variant decoding scenarios. Both theoretical analysis and numerical results show that the proposed method provides the same performance as the existing methods for both time-invariant and time-variant decoding, while the proposed new method facilitates efficient circuit implementations of the LDPC decoder since it does not require the degree information.
AlInAsSb/GaSb staircase avalanche photodiode (2016)

Over 30 years ago, Capasso and co-workers [IEEE Trans. Electron Devices 30, 381 (1982)] proposed the staircase avalanche photodetector (APD) as a solid-state analog of the photomultiplier tube. In this structure, electron multiplication occurs deterministically at steps in the conduction band profile, which function as the dynodes of a photomultiplier tube, leading to low excess multiplication noise. Unlike traditional APDs, the origin of staircase gain is band engineering rather than large applied electric fields. Unfortunately, the materials available at the time, principally AlxGa1−xAs/GaAs, did not offer sufficiently large conduction band offsets and energy separations between the direct and indirect valleys to realize the full potential of the staircase gain mechanism. Here, we report a true staircase APD operation using alloys of a rather underexplored material, AlxIn1−xAsySb1−y, lattice-matched to GaSb. Single step “staircase” devices exhibited a constant gain of ∼2×, over a broad range of applied bias, operating temperature, and excitation wavelengths/intensities, consistent with Monte Carlo calculations.
RGMP-ROS: A real-time ROS architecture of hybrid RTOS and GPOS on multi-core processor (2014)

Recently, the open-source robot operating system (ROS) has been growing rapidly in the robotics community. However, the ROS runs on Linux, which does not provide timing guarantees for robot motion. This paper present a hybrid real-time ROS architecture on multi-core processor “RGMP-ROS”, which consists of two parts including the non-real-time subsystem “GPOS (General Operating system)” and the real-time one “RTOS (Real-time Operating system)”. The GPOS is comprised of non-real-time ROS nodes running in Linux, while the RTOS only contains real-time ROS nodes running in Nuttx. To get higher operational efficiency, the RGMP-ROS system is executed by a dual-core processor, one CPU for GPOS and the other for RTOS. The RGMP-ROS has used in the controller of a 6-DOF modular manipulator, and its effectiveness and efficiency are demonstrated by software testing and experiments. The main contributions of the present work lie in the realization of real-time ROS architecture and the application of multi-core processor in the hybrid control of an industrial robot.
Prevalence of Shigella Enterotoxin 1 among Shigella Clinical Isolates of Diverse Serotypes (1995)

Shigella enterotoxin 1 (ShET1) is a novel, iron-dependent, toxin encoded by chromosomal genes (set1). To determine the prevalence of this enterotoxin, 172 Shigella clinical isolates (and 10 enteroinvasive Escherichia coli [EIEC]) from distant areas worldwide, representing all 4 groups and 45 serotypes of Shigella, were screened for set1 by DNA colony hybridization and polymerase chain reaction amplification. set1 was present in all 22 Shigella flexneri 2a strains tested but was rare in isolates of other Shigella serotypes (3.3%, 5/150) and not found in EIEC (0/10). That ShET1 is found almost exclusively in S. flexneri 2a may help explain the epidemiologic predominance of this serotype in the developing world.
A data-driven model for monocular face tracking (2002)

This paper describes a two-stage system for 3D tracking of pose and deformation of the human face in monocular image sequences without the use of special markers. The first stage of the system learns the space of all possible facial deformations by applying principal component analysis on real stereo tracking data. The resulting model approximates any generic shape as a linear combination of shape basis vectors. The second stage of the system uses this low-complexity deformable model for simultaneous tracking of pose and deformation of the face from a single image sequence. This stage is known as model-based monocular tracking. There are three main contributions of this paper. First we demonstrate that a data-driven approach for model construction is suitable for tracking non rigid objects and offers an elegant and practical alternative to the task of manual construction of models using 3D scanners or CAD modelers. Second, we show that such a method exhibits good tracking accuracy (errors less than 5 mm) and robustness characteristics. Third, we demonstrate that our system exhibits very promising generalization properties in enabling tracking of multiple persons with the same 3D model.
In vivo characteristics of premixed calcium phosphate cements when implanted in subcutaneous tissues and periodontal bone defects (2010)

Previous studies showed that water-free, premixed calcium phosphate cements (Pre-CPCs) exhibited longer hardening times and lower strengths than conventional CPCs, but were stable in the package. The materials hardened only after being delivered to a wet environment and formed hydroxyapatite as the only product. Pre-CPCs also demonstrated good washout resistance and excellent biocompatibility when implanted in subcutaneous tissues in rats. The present study evaluated characteristics of Pre-CPCs when implanted in subcutaneous tissues (Study I) and used for repairing surgically created two-wall periodontal defects (Study II). Pre-CPC pastes were prepared by combining CPC powders that consisted of CPC-1: Ca(4)(PO(4))(2)O and CaHPO(4), CPC-2: α-Ca(3)(PO(4))(2) and CaCO(3) or CPC-3: DCPA and Ca(OH)(2) with a glycerol at powder-to-liquid mass ratios of 3.5, 2.5, and 2.5, respectively. In each cement mixture, the Ca to P molar ratio was 1.67. The glycerol contained Na(2)HPO(4) (30 mass %) and hydroxypropyl methylcellulose (0.55 %) to accelerate cement hardening and improve washout resistance, respectively. In Study I, the test materials were implanted subcutaneously in rats. Four weeks after the operation, the animals were sacrificed and histopathological observations were performed. The results showed that all of the implanted materials exhibited very slight or negligible inflammatory reactions in tissues contacted with the implants. In Study II, the mandibular premolar teeth of mature beagle dogs were extracted. One month later, two-wall periodontal bone defects were surgically created adjacent to the teeth of the mandibular bone. The defects were filled with the Pre-CPC pastes and the flaps replaced in the preoperative position. The dogs were sacrificed at 1, 3 and 6 months after surgery and sections of filled defects resected. Results showed that one month after surgery, the implanted Pre-CPC-1 paste was partially replaced by bone and was converted to bone at 6 months. The pockets filled with Pre-CPC-2 were completely covered by newly formed bone in 1 month. The Pre-CPC-2 was partially replaced by trabecular bone in 1 month and was completely replaced by bone in 6 months. Examination of 1 month and 3 month samples indicated that Pre-CPC-2 resorbed and was replaced by bone more rapidly than Pre-CPC 1. Both Pre-CPC pastes were highly osteoconductive. When implanted in periodontal defects, Pre-CPC-2 was replaced by bone more rapidly than Pre-CPC-1.
Prostate cancer risk stratification via non-destructive 3D pathology with annotation-free gland segmentation and analysis (2021)

Abstract Prostate cancer treatment planning is largely dependent upon examination of core-needle biopsies. In current clinical practice, the microscopic architecture of the prostate glands is what forms the basis for prognostic grading by pathologists. Interpretation of these convoluted 3D glandular structures via visual inspection of a limited number of 2D histology sections is often unreliable, which contributes to the under- and over-treatment of patients. To improve risk assessment and treatment decisions, we have developed a workflow for non-destructive 3D pathology and computational analysis of whole prostate biopsies labeled with a rapid and inexpensive fluorescent analog of standard H&E staining. Our analysis is based on interpretable glandular features, and is facilitated by the development of image-translation-assisted segmentation in 3D (ITAS3D). ITAS3D is a generalizable deep-learning-based strategy that enables tissue microstructures to be volumetrically segmented in an annotation-free and objective (biomarker-based) manner without requiring real immunolabeling. To provide evidence of the translational value of a computational 3D pathology approach, we analyzed ex vivo biopsies ( n = 300) extracted from archived radical-prostatectomy specimens ( N = 50), and found that 3D glandular features are superior to corresponding 2D features for risk stratification of low-to intermediate-risk PCa patients based on their clinical biochemical recurrence (BCR) outcomes. Significance We present an end-to-end pipeline for computational 3D pathology of whole prostate biopsies, showing that non-destructive pathology has the potential to enable superior prognostic stratification for guiding critical oncology decisions.
Central-Monitor Software Module (2005)

One of the software modules of the emergency-vehicle traffic-light-preemption system of the two preceding articles performs numerous functions for the central monitoring subsystem. This module monitors the states of all units (vehicle transponders and intersection controllers): It provides real-time access to the phases of traffic and pedestrian lights, and maps the positions and states of all emergency vehicles. Most of this module is used for installation and configuration of units as they are added to the system. The module logs all activity in the system, thereby providing information that can be analyzed to minimize response times and optimize response strategies. The module can be used from any location within communication range of the system; with proper configuration, it can also be used via the Internet. It can be integrated into call-response centers, where it can be used for alerting emergency vehicles and managing their responses to specific incidents. A variety of utility subprograms provide access to any or all units for purposes of monitoring, testing, and modification. Included are sniffer utility subprograms that monitor incoming and outgoing data for accuracy and timeliness, and that quickly and autonomously shut off malfunctioning vehicle or intersection units.
Evidence and Effects of Ion Transfer at Active‐Material/Electrode Interfaces in Solution‐Fabricated Light‐Emitting Electrochemical Cells (2021)

Abstract The light‐emitting electrochemical cell (LEC) allows for energy‐ and cost‐efficient printing and coating fabrication of its entire device structure, including both electrodes and the single‐layer active material. This attractive fabrication opportunity is enabled by the electrochemical action of mobile ions in the active material. However, a related and up to now overlooked issue is that such solution‐fabricated LECs commonly comprise electrode/active‐material interfaces that are open for transfer of the mobile ions, and it is herein demonstrated that a majority of the mobile anions in a common spray‐coated active material can transfer into a spray‐coated poly(3,4‐ethylenedioxythiophene):poly(styrene‐sulfonate) (PEDOT:PSS) positive electrode during LEC operation. Since it is well established that the mobile ion concentration in the active material has a profound influence on the LEC performance, this significant ion transfer is an important factor that should be considered in the design of low‐cost LEC devices that deliver high performance.