gebhart/patrepeval huggingface dataset:
Regulation of new fat cell formation in rats: the role of dietary fats. (1994)

Factors that stimulate formation of new adipocytes during development of obesity are yet to be identified. We examined whether diet acts directly on preadipocytes to stimulate replication and differentiation or indirectly by interacting with adipocytes to release or modify local growth factors. Male Sprague-Dawley rats were fed chow or diets high in starch (HST), saturated (HFS) or polyunsaturated (HFP) fats until 5-7 months of age. We found that, compared to other diets, HFS induced acceleration of replication of preadipocytes in primary culture (doubling time of retroperitoneal-derived preadipocytes: HFS 17 +/- 1 versus chow 32 +/- 6 and HFP 29 +/- 3 h, P < 0.05). HFS stimulated greater expansion of retroperitoneal fat than HFP even when caloric intake was equal and increased adipocyte number threefold. Preadipocyte pool size in inguinal and retroperitoneal fat pads changed relative to fat pad weight in rats fed all diets compared to chow, suggesting that the balance between the number of cells capable of replicating and those terminally differentiated was perturbed. Differentiation of preadipocytes and release of adipocyte growth factors in vitro were unaffected by diet. We concluded that dietary saturated fats induced expansion of adipose tissue mass more effectively than polyunsaturated fats and that this may, in part, be achieved by acceleration of preadipocyte replication.
Bitcoin System (2017)

Cryptocurrency systems are purely digital and decentralized systems that use cryptographic principles to confirm transactions. Bitcoin is the first and also the most widespread cryptocurrency. The aim of this article is to introduce Bitcoin system using a language understandable also to readers without computer science education. This article captures the Bitcoin system from three perspectives: internal structure, network and users. Emphasis is placed on brief and clear definitions (system components) and their mutual relationships. A new system view of the stated terms constitutes author's own contribution.
A Framework to Select Clinically Relevant Cancer Cell Lines for Investigation by Establishing Their Molecular Similarity with Primary Human Cancers (2011)

Experimental work on human cancer cell lines often does not translate to the clinic. We posit that this is because some cells undergo changes in vitro that no longer make them representative of human tumors. Here, we describe a novel alignment method named Spearman's rank correlation classification method (SRCCM) that measures similarity between cancer cell lines and human tumors via gene expression profiles, for the purpose of selecting lines that are biologically relevant. To show utility, we used SRCCM to assess similarity of 36 bladder cancer lines with 10 epithelial human tumor types (N = 1,630 samples) and with bladder tumors of different stages and grades (N = 144 samples). Although 34 of 36 lines aligned to bladder tumors rather than other histologies, only 16 of 28 had SRCCM assigned grades identical to that of their original source tumors. To evaluate the clinical relevance of this approach, we show that gene expression profiles of aligned cell lines stratify survival in an independent cohort of 87 bladder patients (HR = 3.41, log-rank P = 0.0077) whereas unaligned cell lines using original tumor grades did not. We repeated this process on 22 colorectal cell lines and found that gene expression profiles of 17 lines aligning to colorectal tumors and selected based on their similarity with 55 human tumors stratified survival in an independent cohort of 177 colorectal cancer patients (HR = 2.35, log-rank P = 0.0019). By selecting cell lines that reflect human tumors, our technique promises to improve the clinical translation of laboratory investigations in cancer.
Intravenous Iron Dextran as a Component of Anemia Management in Chronic Kidney Disease: A Report of Safety and Efficacy (2013)

Objective. We aimed to demonstrate safety and efficacy of intravenous (IV) low molecular weight iron dextran (LMWID) during treatment of anemic stage 3 and 4 chronic kidney disease (CKD) patients. Methods. Efficacy data was obtained by retrospective chart review of 150 consecutively enrolled patients. Patients were assigned per protocol to oral or IV iron, with IV iron given to those with lower iron stores and/or hemoglobin. Iron and darbepoetin were administered to achieve and maintain hemoglobin at 10-12 g/dL. Efficacy endpoints were mean hemoglobin and change in iron indices approximately 30 and 60 days after enrollment. Safety data was obtained by retrospective review of reported adverse drug events (ADEs) following 1699 infusions of LMWID (0.5-1.0 g). Results. Mean hemoglobin, iron saturation, and ferritin increased significantly from baseline to 60 days in patients assigned to LMWID (hemoglobin: 11.3 versus 9.4 g/dL; iron saturation: 24% versus 12.9%; ferritin: 294.7 versus 134.7 ng/mL; all P values < 0.0001). Iron stores and hemoglobin were maintained in the group assigned to oral iron. Of 1699 iron dextran infusions, three ADEs occurred. Conclusions. Treatment of anemia in CKD stages 3 and 4 with LMWID and darbepoetin is efficacious. The serious ADE rate was 0.06% per infusion.
Piezoelectricity and inhomogeneity in ceramics, polymers and bone (1983)

The large piezoelectric signals developed by poled ceramics, poled polymers and bone specimens on cantilever bending are shown to result from inhomogeneous piezoelectric coefficients and can all be described by a common model.
A survey of state-of-the-art in anonymity metrics (2008)

Anonymization enables organizations to protect their data and systems from a diverse set of attacks and preserve privacy; however, in the area of anonymized network data, few, if any, are able to precisely quantify how anonymized their information is for any particular dataset. Indeed, recent research indicates that many anonymization techniques leak some information. An ability to confidently measure this information leakage and any changes in anonymity levels plays a crucial role in facilitating the free-flow of cross-organizational network data sharing and promoting wider adoption of anonyimzation techniques. Fortunately, multiple methods of analyzing anonymity exist. Typical approaches use simple quantifications and probabilistic models; however, to the best of our knowledge, only one network data anonymization metric has been proposed. More importantly, no one-stop-shop paper exists that comprehensively surveys this area for other candidate measures; therefore, this paper explores the state-of-the-art of anonymity metrics. The objective is to provide a macro-level view of the systematic analysis of anonymity preservation, degradation, or elimination for data anonymization as well as network communciations anonymization.
Evaluation of Enzyme-Linked Immunoassay and Colloidal Gold-Immunochromatographic Assay Kit for Detection of Novel Coronavirus (SARS-Cov-2) Causing an Outbreak of Pneumonia (COVID-19) (2020)

Abstract BACKGROUND In December 2019, a novel coronavirus (SARS-CoV-2)–infected pneumonia (COVID-19) occurred in Wuhan, China. Travel-associated cases have also been reported in other countries. The number of cases has increased rapidly but laboratory diagnosis is limited. METHODS We collect two groups of cases diagnosed with COVID-19 for experiments. One group collected 63 samples for Enzyme-linked immunosorbent assay (ELISA) IgG and IgM antibodies. The other group collected 91 plasma samples for colloidal gold-immunochromatographic assay (GICA). RESULTS The sensitivity of the combined ELISA IgM and ELISA IgG detection was 55/63 ( 87.3%), The sensitivity of the combined GICA IgM and GICA IgG detection was 75/91 ( 82.4%), Both methods are negative for healthy controls, specificity of 100%. There is no significant difference between the sensitivity of between ELISA and GICA (IgM+ IgG). CONCLUSIONS ELISA and GICA for specific IgM and IgG antibodies are conventional serological assays, they are simple, fast, and safe, the results can be used for clinical reference, and the huge clinical diagnosis and treatment pressure can be greatly relieved.
The use of conglutinin in a quantitative assay for the presence of cell-bound C3bi and evidence that a single molecule of C3bi is capable of binding conglutinin. (1982)

We have developed a quantitative assay for cell surface C3bi using 125I-labeled conglutinin. Conglutinin was purified to homogeneity from bovine serum and radiolabeled with 125I Bolton Hunter reagent. Conditions of time, temperature, ionic strength, and cell concentration that optimized the binding of conglutinin to erythrocytes bearing C3bi were then determined. The interaction between conglutinin and C3bi under these conditions was highly specific, since EAC4b3b, EAC4b3d, EAC4b3b-beta IH, and EAC4b treated with serum did not bind radioconglutinin significance better with EA or EAC4b. Using this assay, was examined the kinetics of inactivation of both human and guinea pig C3b bound to erythrocytes and showed that, for both, maximum conglutinin binding occurred after EAC4b3b had been incubated with a source of beta 1H and C3INA for 10 to 20 min at 37 degrees C.l We showed a linear relationship between the number of molecules of C3bi per erythrocyte and the amount of conglutinin bound for both guinea pig and human C3bi. The affinity of conglutinin for cell-bound C3bi was shown to be independent of C3bi density on the erythrocyte surface, and the Kd for conglutinin binding to erythrocytes bearing human C3bi was determined to be 1.3 X 10(-8) M. The number of conglutinin binding sites per erythrocyte as calculated from Scatchard plots was equal to the number of C3bi molecules on the cell surface as determined by direct assay using 125I-labeled C3. Moreover, for both human and guinea pig C3bi, the plot of log (cell surface C3bi) vs log (conglutinin bound) had a slope of 1. These findings imply that a single molecule of C3bi is capable of binding a molecule of conglutinin under the conditions of our assay.
The Nature of Immune Complexes in Human Cancer Sera (1977)

Sera from 517 patients with various types of malignancies were assayed for immune complexes (ICs) by the Raji cell radioimmune assay. The incidence of immune complexes in these patients ranged from 16 to 52% as compared to 19% in normal controls. Increases in tumor mass and metastatic disease were associated with high levels of circulating ICs. Immunization of melanoma patients with BCG and tumor-cell vaccine produced an increase in levels of ICs. Cancer sera contained complexes of intermediate size. Tumor antigens and IgG, presumably in the form of complexes, were identified by immunofluorescence and radiolabeled antibody techniques on the surface of Raji cells incubated in ICs-containing cancer sera.
Delay lines based on a suspended thin film of X-cut lithium niobate (2017)

We report on the fabrication, experimental characterization, and theoretical modeling of delay lines fabricated on a lithium niobate X-cut thin film substrate. We demonstrate the feasibility of fabricating delay lines on lithium niobate suspended thin films to take advantage of the high electromechanical coupling of Lamb waves in this material. Specifically, we design the delay lines with an orientation of 30° with respect to the Y axis to maximize the coupling coefficient for the propagation of the S <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">0</sub> mode. We show a maximum delay of 1.35 μs. Furthermore, the practically zero stress exhibited by the thin film point to the fact that larger delays could be easily achieved. The propagation loss measured is around 12 dB/cm, or equivalently, 7.5 dB/μs.
Efficient fluids simulation and rendering on GPU (2013)

Interactive fluids simulation and rendering have been the pursuit for VR research. There are high demands for physically plausible fluids in virtual environments. In this paper, we present an efficient GPU-based simulation and rendering framework for large scale SPH fluids. A robust particle classification algorithm is introduced to classify particles into either active or inactive. And the proposed algorithm effectively reduces the computational burden in inactive areas where many particles with stable properties and low local pressure cluster together. At the same time the computation in active areas is fully carried out to preserve the realistic behaviour of fluids. Our time performance tests have shown that our algorithm has high capability in producing time efficiency fluid simulations. When integrated with the parallel HPMC method, we are able to put all the simulation and rendering on GPU, and produce plausible and interactive fluids for large scale virtual environments.
<i>ShadowOui</i>: a new visual environment for X-ray optics and synchrotron beamline simulations (2016)

A new computer environment to perform simulations on synchrotron experiments has been designed. It performs ray-tracing simulations using the popular ray-tracing code SHADOW. With this new application one can define, in a very easy and elegant way, one or several optical systems (beamlines) and perform calculations of the propagation of the X-ray beam through it. Many complementary tools and supplementary calculations improve and extend the functionality of SHADOW to deal with complex optical system optimization, including compound optical elements, iterative calculations, some sample simulations, and implementing corrections for wave optics via a hybrid model.
Continuous speech recognition using segmental neural nets (1991)

We present the concept of a "Segmental Neural Net" (SNN) for phonetic modeling in continuous speech recognition. The SNN takes as input all the frames of a phonetic segment and gives as output an estimate of the probability of each of the phonemes, given the input segment. By taking into account all the frames of a phonetic segment simultaneously, the SNN overcomes the well-known conditional-independence limitation of hidden Markov models (HMM). However, the problem of automatic segmentation with neural nets is a formidable computing task compared to HMMs. Therefore, to take advantage of the training and decoding speed of HMMs, we have developed a novel hybrid SNN/HMM system that combines the advantages of both types of approaches. In this hybrid system, use is made of the N-best paradigm to generate likely phonetic segmentations, which are then scored by the SNN. The HMM and SNN scores are then combined to optimize performance. In this manner, the recognition accuracy is guaranteed to be no worse than the HMM system alone.
The NK Cell Response to Mouse Cytomegalovirus Infection Affects the Level and Kinetics of the Early CD8<sup>+</sup>T-Cell Response (2011)

Natural killer (NK) cells and CD8(+) T cells play a prominent role in the clearance of mouse cytomegalovirus (MCMV) infection. The role of NK cells in modulating the CD8(+) T-cell response to MCMV infection is still the subject of intensive research. For analyzing the impact of NK cells on mounting of a CD8(+) T-cell response and the contribution of these cells to virus control during the first days postinfection (p.i.), we used C57BL/6 mice in which NK cells are specifically activated through the Ly49H receptor engaged by the MCMV-encoded ligand m157. Our results indicate that the requirement for CD8(+) T cells in early MCMV control inversely correlates with the engagement of Ly49H. While depletion of CD8(+) T cells has only a minor effect on the early control of wild-type MCMV, CD8(+) T cells are essential in the control of Δm157 virus. The frequencies of virus epitope-specific CD8(+) T cells and their activation status were higher in mice infected with Δm157 virus. In addition, these mice showed elevated levels of alpha interferon (IFN-α) and several other proinflammatory cytokines as early as 1.5 days p.i. Although the numbers of conventional dendritic cells (cDCs) were reduced later during infection, particularly in Δm157-infected mice, they were not significantly affected at the peak of the cytokine response. Altogether, we concluded that increased antigen load, preservation of early cDCs' function, and higher levels of innate cytokines collectively account for an enhanced CD8(+) T-cell response in C57BL/6 mice infected with a virus unable to activate NK cells via the Ly49H-m157 interaction.
Fed‐batch microbioreactor platform for scale down and analysis of a plasmid DNA production process (2012)

The rising costs of bioprocess research and development emphasize the need for high-throughput, low-cost alternatives to bench-scale bioreactors for process development. In particular, there is a need for platforms that can go beyond simple batch growth of the organism of interest to include more advanced monitoring, control, and operation schemes such as fed-batch or continuous. We have developed a 1-mL microbioreactor capable of monitoring and control of dissolved oxygen, pH, and temperature. Optical density can also be measured online for continuous monitoring of cell growth. To test our microbioreactor platform, we used production of a plasmid DNA vaccine vector (pVAX1-GFP) in Escherichia coli via a fed-batch temperature-inducible process as a model system. We demonstrated that our platform can accurately predict growth, glycerol and acetate concentrations, as well as plasmid copy number and quality obtained in a bench-scale bioreactor. The predictive abilities of the micro-scale system were robust over a range of feed rates as long as key process parameters, such as dissolved oxygen, were kept constant across scales. We have highlighted plasmid DNA production as a potential application for our microbioreactor, but the device has broad utility for microbial process development in other industries as well.
Mitigation of acute kidney injury by cell-cycle inhibitors that suppress both CDK4/6 and OCT2 functions (2015)

Acute kidney injury (AKI) is a potentially fatal syndrome characterized by a rapid decline in kidney function caused by ischemic or toxic injury to renal tubular cells. The widely used chemotherapy drug cisplatin accumulates preferentially in the renal tubular cells and is a frequent cause of drug-induced AKI. During the development of AKI the quiescent tubular cells reenter the cell cycle. Strategies that block cell-cycle progression ameliorate kidney injury, possibly by averting cell division in the presence of extensive DNA damage. However, the early signaling events that lead to cell-cycle activation during AKI are not known. In the current study, using mouse models of cisplatin nephrotoxicity, we show that the G1/S-regulating cyclin-dependent kinase 4/6 (CDK4/6) pathway is activated in parallel with renal cell-cycle entry but before the development of AKI. Targeted inhibition of CDK4/6 pathway by small-molecule inhibitors palbociclib (PD-0332991) and ribociclib (LEE011) resulted in inhibition of cell-cycle progression, amelioration of kidney injury, and improved overall survival. Of additional significance, these compounds were found to be potent inhibitors of organic cation transporter 2 (OCT2), which contributes to the cellular accumulation of cisplatin and subsequent kidney injury. The unique cell-cycle and OCT2-targeting activities of palbociclib and LEE011, combined with their potential for clinical translation, support their further exploration as therapeutic candidates for prevention of AKI.
High affinity histamine binding site is the H<sub>3</sub> receptor: Characterization and autoradiographic localization in rat brain (1991)

The binding of the histamine autoreceptor (H3) agonist [3H]-N alpha-methyl-histamine ([3H]-N-MeHA) was examined in 25 micron thick rat forebrain sections. The specific binding was saturable and of high affinity: Scatchard analysis indicated a Kd of 2 nM and a Bmax of 25 +/- 3 fmol/section. Under similar conditions, [3H]-histamine [( 3H]-HA) bound with a Kd of 8 nM and a Bmax of 20 +/- 2 fmol/section. Competition studies indicated that both ligands bound an identical site which had the pharmacological characteristics of the H3 binding site. The high affinity binding of [3H-N-MeHA was sensitive to the presence of 5'-guanylyl-imidodiphosphate, indicating that the binding site is likely coupled to a G-protein. Autoradiographic studies indicated the [3H]-N-MeHA binding to be greatest in the nucleus accumbens, striatum, substantia nigra pars reticulata, and certain cortical areas. Striatal quinolinic acid lesions greatly reduced binding in both the striatum and ipsilateral substantia nigra, while 6-hydroxydopamine lesions of the nigrostriatal dopamine system were without effect on binding. Therefore, most of the H3 binding sites in the basal ganglia are on striatonigral projection neurons. Cortical quinolinic acid lesions greatly reduced H3 binding in cortex, indicating that the binding in cortex, as in striatum, is largely on intrinsic neurons, rather than on afferents such as histamine nerve terminals.
Determining the Mark–Houwink parameters of nitrile rubber: a chromatographic investigation of the NBR microstructure (2013)

The microstructure of acrylonitrile–butadiene rubber (NBR) was shown to be dependent on the polymerization conditions. The NBR investigated in the current study was obtained via radical copolymerization under azeotropic conditions (AN/BD = 38/62) in organic solution in the presence of either a conventional chain transfer agent or a reversible addition fragmentation chain transfer (RAFT) agent. The variation in the polymer microstructure was proven to originate from different radical environments during the polymerizations with initial radical initiator concentrations in the polymerizations studied ranging from 1.0 mM to 34.1 mM. The variation of the polymer microstructure was evidenced by triple SEC measurements, making use of the simultaneous determination of molecular weights with two independent methods, namely on-line viscometry and on-line light scattering. It is additionally evidenced that the microstructure shows a gradual variation during the course of a polymerization, a behaviour observed when the polymerizations were performed in the presence of an elevated initial radical initiator concentration. Furthermore, experimental evidence for the variation of the NBR microstructure during RAFT polymerizations is provided. At low conversions, a rather uniform polymer is obtained. With increasing conversion, a loss of the controlled character is observed and the microstructures approach those of nitrile rubber obtained by conventionally controlled free radical copolymerizations employing mercaptane transfer agents. Despite the differences in the polymer microstructure, it is possible to report a single set of MHKS parameters for the prepared NBR with azeotropic composition. A linear regression of the Mark–Houwink plots of the samples polymerized under different conditions gives values of K = (49.5 ± 5.5) × 10−5 dL g−1 and α = 0.689 ± 0.010 with a low error margin for SEC separation in THF at 25 °C. Weight average molecular weights of the investigated NBR samples were in the range of 40 000 to 155 000 g mol−1. The molecular weights of the copolymers determined via universal calibration with the MHKS parameters presented in the current study show a good agreement with molecular weights obtained from light scattering, underpinning the veracity of the obtained parameters.
Optical excitation of nanoelectromechanical oscillators (2005)

We report a method of optical excitation of nanomechanical cantilever-type oscillators. The periodic driving signal with a controlled modulation amplitude was provided by a 415 nm diode laser, wherein the laser spot was located at some distance away from the clamped end of the cantilever. The measured resonant response of the cantilever was obtained at distances in excess of 160μm with varying oscillator dimensions. The effectiveness of the driving mode is studied for different combinations of materials, namely Si–SiO2 and Si3N4–SiO2. These observations were considered within the theoretical framework of the mechanism of heat transfer. We show that measurable amplitudes of vibrations can be obtained at temperature changes much less than 1°.