gebhart/patrepeval huggingface dataset:
HyPar: Towards Hybrid Parallelism for Deep Learning Accelerator Array (2019)

With the rise of artificial intelligence in recent years, Deep Neural Networks (DNNs) have been widely used in many domains. To achieve high performance and energy efficiency, hardware acceleration (especially inference) of DNNs is intensively studied both in academia and industry. However, we still face two challenges: large DNN models and datasets, which incur frequent off-chip memory accesses; and the training of DNNs, which is not well-explored in recent accelerator designs. To truly provide high throughput and energy efficient acceleration for the training of deep and large models, we inevitably need to use multiple accelerators to explore the coarse-grain parallelism, compared to the fine-grain parallelism inside a layer considered in most of the existing architectures. It poses the key research question to seek the best organization of computation and dataflow among accelerators. In this paper, inspired by recent work in machine learning systems, we propose a solution HyPar to determine layer-wise parallelism for deep neural network training with an array of DNN accelerators. HyPar partitions the feature map tensors (input and output), the kernel tensors, the gradient tensors, and the error tensors for the DNN accelerators. A partition constitutes the choice of parallelism for weighted layers. The optimization target is to search a partition that minimizes the total communication during training a complete DNN. To solve this problem, we propose a communication model to explain the source and amount of communications. Then, we use a hierarchical layer-wise dynamic programming method to search for the partition for each layer.
MA-FEC: a QoS-based adaptive FEC for multicast communication in wireless networks (2002)

Wireless channels are highly affected by unpredictable factors such as cochannel interference, adjacent channel interference, propagation path loss, shadowing and multipath fading. The unreliability of media degrades the transmission quality seriously. Forward error correction (FEC) schemes are frequently used in wireless environments to reduce the high bit error rate of the channel. In this paper, we propose an adaptive FEC scheme for multicast communication in wireless networks based on dynamic variation of coding parameters as a function of the channel bit error rate, desired QoS in terms of reliability, number of receivers and efficiency in terms of bandwidth use. Reed-Solomon erasure codes are used throughout this study because of their appropriate characteristics in terms of powerful coding and implementation simplicity. We make a numerical analysis of a set of Reed-Solomon erasure codes. The observations made throughout this numerical analysis are the basic principals of our adaptive FEC scheme. Numerical results show that our adaptive scheme provides the best trade-off between transmission overhead and guaranteed QoS.
Epitaxial BiFeO <sub>3</sub> Multiferroic Thin Film Heterostructures (2003)

Enhancement of polarization and related properties in heteroepitaxially constrained thin films of the ferroelectromagnet, BiFeO3, is reported. Structure analysis indicates that the crystal structure of film is monoclinic in contrast to bulk, which is rhombohedral. The films display a room-temperature spontaneous polarization (50 to 60 microcoulombs per square centimeter) almost an order of magnitude higher than that of the bulk (6.1 microcoulombs per square centimeter). The observed enhancement is corroborated by first-principles calculations and found to originate from a high sensitivity of the polarization to small changes in lattice parameters. The films also exhibit enhanced thickness-dependent magnetism compared with the bulk. These enhanced and combined functional responses in thin film form present an opportunity to create and implement thin film devices that actively couple the magnetic and ferroelectric order parameters.
A 60 GHz Low Phase Variation Variable Gain Amplifier in 65 nm CMOS (2014)

This letter presents a 57-66 GHz low phase variation variable gain amplifier (VGA) in standard RF 65 nm CMOS process with a chip area of 0.25 mm <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> . The phase compensation is achieved by using the different trends of phase between current-steering and splitting-cascade topologies. This VGA achieves the phase variation lower than 7° with 33 dB gain control range (GCR). The 3 dB bandwidth is from 50 to 70 GHz with 21 dB peak gain.
OCTET (2013)

Parallel programming is essential for reaping the benefits of parallel hardware, but it is notoriously difficult to develop and debug reliable, scalable software systems. One key challenge is that modern languages and systems provide poor support for ensuring concurrency correctness properties - atomicity, sequential consistency, and multithreaded determinism - because all existing approaches are impractical. Dynamic, software-based approaches slow programs by up to an order of magnitude because capturing and controlling cross-thread dependences (i.e., conflicting accesses to shared memory) requires synchronization at virtually every access to potentially shared memory. This paper introduces a new software-based concurrency control mechanism called OCTET that soundly captures cross-thread dependences and can be used to build dynamic analyses for concurrency correctness. OCTET achieves low overheads by tracking the locality state of each potentially shared object. Non-conflicting accesses conform to the locality state and require no synchronization; only conflicting accesses require a state change and heavyweight synchronization. This optimistic tradeoff leads to significant efficiency gains in capturing cross-thread dependences: a prototype implementation of OCTET in a high-performance Java virtual machine slows real-world concurrent programs by only 26% on average. A dependence recorder, suitable for record & replay, built on top of OCTET adds an additional 5% overhead on average. These results suggest that OCTET can provide a foundation for developing low-overhead analyses that check and enforce concurrency correctness.
Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro (2010)

We propose that most reported examples of non-canonical splicing in metazoans arise through template switching by reverse transcriptase during cDNA preparation. We further show that the products of template switching can vary between reverse transcriptases, providing a simple diagnostic for identifying many of these experimental artifacts.
Deployment of a fiber Bragg grating-based measurement system in a structural health monitoring application (2001)

The development and maturation of fiber optic sensor technology has been an increasingly important component of the structural health monitoring field. A strain sensor system has been developed to provide high-resolution, low-noise sets of useful data which can be analyzed and processed with a number of existing damage detection techniques. Recent research at the Naval Research Laboratory has also begun in combining vibration-based damage detection with statistical methods, and some preliminary results are included.
Regulation of bone matrix protein expression and induction of differentiation of human osteoblasts and human bone marrow stromal cells by bone morphogenetic protein-2 (1997)

We have examined the effects of BMP-2 on the expression of bone matrix proteins in both human bone marrow stromal cells (HBMSC) and human osteoblasts (HOB) and their proliferation and mineralization. Both HBMSC and HOB express BMP-2/-4 type I and type II receptors. Treatment of these two cell types with BMP-2 for 4 weeks in the presence of beta-glycerophosphate and ascorbic acid results in mineralization of their matrix. BMP-2 increases the mRNA level and activities of alkaline phosphatase and elevates the mRNA levels and protein synthesis of osteopontin, bone sialoprotein, osteocalcin, and alpha 1(I) collagen in both cell types. Whereas the mRNA level of decorin is increased, the mRNA concentration of biglycan is not altered by BMP-2. No effect on osteonectin is observed. The effect of BMP-2 on bone matrix protein expression is dose dependent from 25 to 100 ng/ml and is evident after 1-7 days treatment. In the presence of BMP-2, proliferation of HBMSC and HOB is decreased under either serum-free condition or in the presence of serum. Thus, BMP-2 has profound effects on the proliferation, expression of most of the bone matrix proteins and the mineralization of both relatively immature human bone marrow stromal preosteoblasts and mature human osteoblasts.
A Cochlear-Implant Processor for Encoding Music and Lowering Stimulation Power (2008)

Cochlear implants (CIs), or bionic ears, restore hearing in profoundly deaf (greater than -90 dB hearing loss) patients. They function by transforming frequency patterns in sound into corresponding spatial electrode-stimulation patterns for the auditory nerve. Over the past 20 years, improvements in sound-processing strategies, in the number of electrodes and channels, and in the rate of stimulation have yielded improved sentence and word recognition scores in patients. Next- generation implants will be fully implanted inside the patient's body. Consequently, power consumption requirements for signal processing will be very stringent.
Multidimensional proteomics of human serum using parallel chromatography of native constituents and microplate technology (2005)

A versatile, multidimensional, and non-denaturing proteome separation procedure using microplate technology is presented, yielding a digitized image of proteome composition. In the first dimension, the sample under study is separated into 96 fractions by size exclusion chromatography (SEC). In the second dimension, the fractions of the first dimension are transferred by the liquid-handling device CyBi-Well (CyBio AG, Jena, Germany) to 96 parallel anion exchange chromatography columns. In this way the proteins are conserved in their native states and are distributed in 2400 liquid fractions with high recovery rates and sufficient reproducibility. The resulting fractions are subjected to protein quantitation and identification. Spectrophotometrical and immunological methods and enzyme activity measurements are used for quantitation. To identify proteins, the fractions are subjected to MALDI-MS, and their tryptic digests to both MALDI- and LC-ESI-MS/MS. All preparation steps except the first are applied in parallel to sets of multiples of 96 samples. The procedure may be refined by adding more separation steps and may be adapted to various protein amounts and to various proteomes. Moreover, the method offers the opportunity to investigate functional protein complexes. The method was applied to separate the normal human serum proteome. Within 255 fractions exhibiting the highest protein concentrations, 742 proteins were identified by LC-ESI-MS/MS peptide sequence tags.
The Comparison of Absorption Characteristics between High Absorbent Polymers and Cellulose (1990)

This experiment was carried out to improve the quality of high absorbent polymer which has excellent absorptivity and water retention compared to pulp and absorption sheet, through absorption characteristics-absorptive power, water retention, absorption rate, gel strength, pH, particle size, and moisture content. - of six polymers, namely, anionic polyacrylamide, cationic polyacrylamide, polyacrylic, acid polyvinyle alcohol 500, and 1500, and a-cellulose. and to examine the possibility of substitution of amide groups for carboxyl group and/or hydroxyl group which were commercial high absorbent polymer by comparing the absorption characteristics of the polymers. Polyacrylamide has high absorptive power and water retention, but has low gel strength and poor absorption rate. The rest of polymers were similiar to -cellulose in every respect. Thus, polyacrylamides could be replaced with polyacrylic acid and polyvinyl alcohol which are presently a high absorbent polymers. In comparing the absorption characteristics and the absorptive power of the polymers-anionic polyacrylamide, cationic polyacrylamide, polyacrylic acid, polyvinyle alcohol. a-cellulose-the absorptive power was in inverse proportion to the gel strength and absorption rates, affected by the particle size and pH change.
12.4: A 1080 Line, Single Panel LCOS Rear Projection System with a Rotating Drum (2004)

Abstract A high‐resolution, rear projection system has been developed. This system includes a 1080 line LCOS imager and an optical engine based on a rotating drum. The system provides 800:1 contrast at the screen, a color gamut larger than ITU Rec. 709 colorimetry for HDTV and 500 nits at the screen from a 120W UHP lamp.
To FUSE or not to FUSE: performance of user-space file systems (2017)

Traditionally, file systems were implemented as part of OS kernels. However, as complexity of file systems grew, many new file systems began being developed in user space. Nowadays, user-space file systems are often used to prototype and evaluate new approaches to file system design. Low performance is considered the main disadvantage of user-space file systems but the extent of this problem has never been explored systematically. As a result, the topic of user-space file systems remains rather controversial: while some consider user-space file systems a toy not to be used in production, others develop full-fledged production file systems in user space. In this paper we analyze the design and implementation of the most widely known user-space file system framework--FUSE--and characterize its performance for a wide range of workloads. We instrumented FUSE to extract useful statistics and traces, which helped us analyze its performance bottlenecks and present our analysis results. Our experiments indicate that depending on the workload and hardware used, performance degradation caused by FUSE can be completely imperceptible or as high as -83% even when optimized; and relative CPU utilization can increase by 31%.
Car-to-Cloud Communication Traffic Analysis Based on the Common Vehicle Information Model (2017)

Although connectivity services have been introduced already today in many of the most recent car models, the potential of vehicles serving as highly mobile sensor platform in the Internet of Things (IoT) has not been sufficiently exploited yet. The European AutoMat project has therefore defined an open Common Vehicle Information Model (CVIM) in combination with a cross-industry, cloud-based big data marketplace. Thereby, vehicle sensor data can be leveraged for the design of entirely new services even beyond traffic-related applications (such as localized weather forecasts). This paper focuses on the prediction of the achievable data rate making use of an analytical model based on empirical measurements. For an in-depth analysis, the CVIM has been integrated in a vehicle traffic simulator to produce CVIM-complaint data streams as a result of the individual behavior of each vehicle (speed, brake activity, steering activity, etc.). In a next step, a simulation of vehicle traffic in a realistically modeled, large-area street network has been used in combination with a cellular Long Term Evolution (LTE) network to determine the cumulated amount of data produced within each network cell. As a result, a new car-to-cloud communication traffic model has been derived, which quantifies the data rate of aggregated car-to-cloud data producible by vehicles depending on the current traffic situations (free flow and traffic jam). The results provide a reference for network planning and resource scheduling for car-to-cloud type services in the context of smart cities.
Design of a 10-bit 40 MS/s pipelined ADC using 1.5-bit with current-mode reference shifting (2011)

This paper presents a 1.5-bit MDAC circuit to be used in pipeline ADCs which employs a switched-current source to perform the reference shifting of the MDAC (the 1.5-bit digital-to-analog function). In the proposed circuit, the two single-ended reference voltage sources that are traditionally used (V REFP and V REFN ), are replaced by a switched-current source. To evaluate and compare the performance of the proposed circuit, two 10-bit 40 MS/s ADCs, one using the traditional switched-capacitor (SC) MDAC and the other using the proposed MDAC, are designed. Simulation results show that the performance of the ADC with the proposed MDAC is enhanced since the power needed for the current sources is smaller than the power supplied by the reference voltage sources. Moreover, the proposed circuit does not require any reference voltage buffer, which can be difficult to design with relatively low power dissipation.
The Enfranchisement of the Urban Poor in Late-Victorian Britain (2006)

Abstract This chapter highlights Colin Matthew's first published article as one of his most influential pieces. In his celebrated 1976 essay on the role of franchise extension in the rise of the Labour Party, Colin, writing with Ross McKibbin and John Kay, argued that the then little studied fourth Reform Act of 1918 had, by enfranchising the 30 per cent or so of adult men previously beyond the political pale, provided the impetus for the growth of Labour and the replacement of the Liberals as the party of the left. The authors argued that the bulk of the missing 30 per cent before 1918 were working class. They showed that in the pre-1918 system urban, industrial boroughs had the lowest proportion of their male population registered to vote, and prosperous county towns the highest. The ‘Franchise Factor’ article looked forward into the twentieth-century. Colin Matthew, at least, was much influenced in writing it by the then prevalent view of the steady emergence of class as the basis of political allegiance during the course of the twentieth-century.
Chemokines and Transplant Immunobiology (2002)

The importance of showing up at the right place at the right time is instilled in leukocytes, just as it is in each one of us, by our parents. The fact that leukocyte infiltration of a newly established allograft typically presages the development of acute rejection is the downside of having an
Verification of a Deep Learning-Based Tree Species Identification Model Using Images of Broadleaf and Coniferous Tree Leaves (2022)

The objective of this study was to verify the accuracy of tree species identification using deep learning with leaf images of broadleaf and coniferous trees in outdoor photographs. For each of 12 broadleaf and eight coniferous tree species, we acquired 300 photographs of leaves and used those to produce 72,000 256 × 256-pixel images. We used Caffe as the deep learning framework and AlexNet and GoogLeNet as the deep learning algorithms. We constructed four learning models that combined two learning patterns: one for individual classification of 20 species and the other for two-group classification (broadleaf vs. coniferous trees), with and without data augmentation, respectively. The performance of the proposed model was evaluated according to the MCC and F-score. Both classification models exhibited very high accuracy for all learning patterns; the highest MCC was 0.997 for GoogLeNet with data augmentation. The classification accuracy was higher for broadleaf trees when the model was trained using broadleaf only; for coniferous trees, the classification accuracy was higher when the model was trained using both tree types simultaneously than when it was trained using coniferous trees only.
Bioavailability and biodegradation of weathered diesel fuel in aquifer material under denitrifying conditions (1998)

Abstract During the in situ bioremediation of a diesel fuel-contaminated aquifer in Menziken, Switzerland, aquifer material containing weathered diesel fuel (WDF) and indigenous microorganisms was excavated. This material was used to identify factors limiting WDF biodegradation under denitrifying conditions. Incubations of this material for 360 to 390 d under denitrifying conditions resulted in degradation of 23% of the WDF with concomitant consumption of NO 3− and production of inorganic carbon. The biodegradation of WDF and the rate of NO 3− consumption was stimulated by agitation of the microcosms. Biodegradation was not stimulated by the addition of a biosurfactant (rhamnolipids) or a synthetic surfactant (Triton X-100) at concentrations above their critical micelle concentrations. The rhamnolipids were biodegraded preferentially to WDF, whereas Triton X-100 was not degraded. Both surfactants reduced the surface tension of the growth medium from 72 to &lt;35 dynes/cm and enhanced the apparent aqueous solubility of the model hydrocarbon n-hexadecane by four orders of magnitude. Solvent-extracted WDF, added at a concentration equal to that already present in the aquifer material, was also biodegraded by the microcosms, but not at a higher rate than the WDF already present in the material. The results show that the denitrifying biodegradation of WDF is not necessarily limited by bioavailability but rather by the inherent recalcitrance of WDF.
Photosynthetic Response of Soybean Leaf to Wide Light-Fluctuation in Maize-Soybean Intercropping System (2017)

In maize-soybean intercropping system, soybean plants will be affected by the wide light-fluctuation, which resulted from the shading by maize plants, as the shading of maize the light is not enough for soybean in the early morning and late afternoon, but at noon, the light is strong as the maize shading disappeared. The objective of this study is to evaluate the photosynthetic response of soybean leaf to the wide light-fluctuation. The data of diurnal variation of photosynthetic characters showed that the photosynthetic rate of intercropped soybean was weaker than that of monocropped soybean. The chlorophyll content, ratio of chlorophyll a/b, and AQE (apparent quantum efficiency) were increased and <i>R</i><sub>d</sub> (dark respiration rate) was decreased for the more efficient interception and absorption of light and carbon gain in intercropping. δ<sub>Ro</sub> (The efficiency/probability with which an electron from the intersystem electron carriers was transferred to reduce end electron acceptors at the PSI acceptor side) and φ<sub>Ro</sub> (the quantum yield for the reduction of the end electron acceptors at the PSI acceptor side) in intercropped soybean leaf were lower compared to those in monocropped one, which showed that the acceptor side of PSI might be inhibited, and also it was the main reason that soybean plants showed a low photosynthetic capacity in intercropping. ψ<sub>Eo</sub> (the efficiency/probability with an electron moves further than Q<sub>A</sub><sup>-</sup>) in monocropping and intercropping decreased 5.8, and 35.7%, respectively, while φ<sub>Eo</sub> (quantum yield for electron transport) decreased 27.7 and 45.3% under the high radiation at noon, which suggested that the acceptor side of PSII was inhibited, while the NPQ became higher. These were beneficial to dissipate excess excitation energy in time, and protect the photosynthetic apparatus against photo-damage. The higher performance index on the absorption basis (PI<sub>ABS</sub>) and lower δ<sub>Ro</sub>, φ<sub>Ro</sub>, ψ<sub>Eo</sub>, and φ<sub>Eo</sub> of intercropped soybeans compared to monocropping under high radiation indicated that the electron transfer of intercropped soybean was inhibited more seriously and intercropped soybean adjusted the electron transport between PSII to PSI to adapt the light-fluctuation. Higher NPQ capacity of intercropped soybeans played a key role in keeping the leaf with a better physiological flexibility under the high radiation.