gebhart/patrepeval huggingface dataset:
Hemodynamic Changes in the Right Ventricle Induced by Variations of Cardiac Output: A Possible Mechanism for Arrhythmia Occurrence in the Outflow Tract (2019)

The rationale of this paper is to investigate right ventricular (RV) hemodynamics in relation to changes in cardiac output, and in particular to study exercise-induced stresses at the RV outflow tract (RVOT), which is a common site of ventricular arrhythmias in the athlete's heart. We hypothesize that the thin-walled RVOT is exposed to high wall shear stresses (WSS) during physiological states associated with high cardiac output such as exercise, and therefore, may be particularly prone to substrate formation leading to ventricular tachyarrhythmias. 3D Particle Tracking Velocimetry (3D-PTV), an optical imaging method, has been performed in a novel anatomically accurate compliant silicone right heart model derived from a high resolution MRI heart scan of a healthy male proband. RV and RVOT flow patterns at resting conditions were obtained from two healthy athletic male proband's hearts and two patients with arrhythmogenic right ventricular cardiomyopathy/dysplasia (ARVC/D) via phase contrast magnetic resonance imaging (PC-MRI). The healthy case was used as a reference for validating the in vitro flow patterns of the silicone model, while the diseased cases were used to generalize our findings and investigate possible changes in hemodynamic stresses with RV morphological remodelling. Our results showed that both healthy and diseased geometries consistently displayed an increased WSS in the RVOT relative to the rest of the RV. We found that increases in cardiac output may lead to increases of mean kinetic energy (MKE), laminar viscous dissipation and WSS at the RVOT. Furthermore, higher peak WSS magnitudes were found for the diseased cases. The identified high WSS regions may correlate with the common site of RVOT ventricular tachycardia in athletes and patients with ARVC/D. Our results imply that exercise, as well as anatomical and functional remodeling might alter RV wall shear stress both in magnitude and spatial distribution, leading to increased hemodynamic stresses in the RVOT.
Isolation of Nuclei for Use in Genome-Wide DNase Hypersensitivity Assays to Probe Chromatin Structure (2013)

DNase hypersensitivity (DHS) analysis coupled with high-throughput DNA sequencing (DNase-seq) has emerged as a powerful tool to analyze chromatin accessibility and identify regulatory sequences in genomic DNA on a global scale. In this method, intact nuclei are isolated from fresh tissue or cultured cells and then subjected to limited digestion using DNase I. The resulting short DNA fragments released by DNase digestion, which correspond to regions of open chromatin structure, are subsequently purified and identified by high throughput next generation DNA sequencing. This chapter describes methods used to isolate intact nuclei from mouse liver suitable for DNase-seq studies. The following chapter presents a detailed protocol for DNase I digestion of liver nuclei followed by the isolation of DNase-released fragments for sequencing and genome-wide mapping of DHS sites.
Colloidal Quantum Dot Photovoltaics: A Path Forward (2011)

Colloidal quantum dots (CQDs) offer a path toward high-efficiency photovoltaics based on low-cost materials and processes. Spectral tunability via the quantum size effect facilitates absorption of specific wavelengths from across the sun's broad spectrum. CQD materials' ease of processing derives from their synthesis, storage, and processing in solution. Rapid advances have brought colloidal quantum dot photovoltaic solar power conversion efficiencies of 6% in the latest reports. These achievements represent important first steps toward commercially compelling performance. Here we review advances in device architecture and materials science. We diagnose the principal phenomenon-electronic states within the CQD film band gap that limit both current and voltage in devices-that must be cured for CQD PV devices to fulfill their promise. We close with a prescription, expressed as bounds on the density and energy of electronic states within the CQD film band gap, that should allow device efficiencies to rise to those required for the future of the solar energy field.
The Problem of the Multiple Letter Canon of the New Testament (1986)

Abstract The purpose of this essay is to discuss the idea of canon as it guides our study of the New Testament Letter.1 Following the lead of Brevard Childs and James Sanders, it will be argued that the forces which selected and collected two corpora of letters, Pauline and non-Pauline, and then formed them into a single canonical unit, envisage a set of hermeneutical clues which should guide the Church's interpretation of the New Testament letters.2
Performance Analysis of FSO System with Spatial Diversity and Relays for\n M-QAM over Log-Normal Channel (2017)

The performance analysis of free space optical communication (FSO) systems\nusing relays and spatial diversity at the transmitter end is presented in this\npaper. The impact of atmospheric turbulence and attenuation caused by different\nweather conditions and geometric losses has also been taken into account. The\neffect of turbulence is modeled over a log-normal probability density function.\nWe present the exact closed form expressions of bit-error rate (BER) for M-ary\nquadrature amplitude modulation (M-QAM). The FSO system link performance is\ncompared for on-off keying, M-ary pulse amplitude modulation and M-QAM\nmodulation techniques. For relay based free space optical communication\nsystems, M-QAM is proved to be superior than other systems considering the same\nspectral efficiency for each system. A significant performance enhancement in\nterms of BER analysis and SNR gains is shown for multi-hop MISO FSO system.\n
Dosimetric accuracy of dynamic couch rotation during volumetric modulated arc therapy (DCR-VMAT) for primary brain tumours (2019)

Radiotherapy treatment plans using dynamic couch rotation during volumetric modulated arc therapy (DCR-VMAT) reduce the dose to organs at risk (OARs) compared to coplanar VMAT, while maintaining the dose to the planning target volume (PTV). This paper seeks to validate this finding with measurements. DCR-VMAT treatment plans were produced for five patients with primary brain tumours and delivered using a commercial linear accelerator (linac). Dosimetric accuracy was assessed using point dose and radiochromic film measurements. Linac-recorded mechanical errors were assessed by extracting deviations from log files for multi-leaf collimator (MLC), couch, and gantry positions every 20 ms. Dose distributions, reconstructed from every fifth log file sample, were calculated and used to determine deviations from the treatment plans. Median (range) treatment delivery times were 125 s (123-133 s) for DCR-VMAT, compared to 78 s (64-130 s) for coplanar VMAT. Absolute point doses were 0.8% (0.6%-1.7%) higher than prediction. For coronal and sagittal films, respectively, 99.2% (96.7%-100%) and 98.1% (92.9%-99.0%) of pixels above a 20% low dose threshold reported gamma <1 for 3% and 3 mm criteria. Log file analysis showed similar gantry rotation root-mean-square error (RMSE) for VMAT and DCR-VMAT. Couch rotation RMSE for DCR-VMAT was 0.091° (0.086-0.102°). For delivered dose reconstructions, 100% of pixels above a 5% low dose threshold reported gamma <1 for 2% and 2 mm criteria in all cases. DCR-VMAT, for the primary brain tumour cases studied, can be delivered accurately using a commercial linac.
In vivo imaging of cellular proliferation in colorectal cancer using positron emission tomography (2003)

(18)FLT PET correlates with cellular proliferation markers in both primary and metastatic CRC. This technique could provide a mechanism for in vivo grading of malignancy and early prediction of response to adjuvant chemotherapy.
Expression of bacterial mtlD in Saccharomyces cerevisiae results in mannitol synthesis and protects a glycerol-defective mutant from high-salt and oxidative stress (1997)

Polyols, or polyhydroxy alcohols, are produced by many fungi. Saccharomyces cerevisiae produces large amounts of glycerol, and several fungi that cause serious human infections produce D-arabinitol and mannitol. Glycerol functions as an intracellular osmolyte in S. cerevisiae, but the functions of D-arabinitol and mannitol in pathogenic fungi are not yet known. To investigate the functions of mannitol, we constructed a new mannitol biosynthetic pathway in S. cerevisiae. S. cerevisiae transformed with multicopy plasmids encoding the mannitol-1-phosphate dehydrogenase of Escherichia coli produced mannitol, whereas S. cerevisiae transformed with control plasmids did not. Although mannitol production had no obvious phenotypic effects in wild-type S. cerevisiae, it restored the ability of a glycerol-defective, osmosensitive osg1-1 mutant to grow in the presence of high NaCl concentrations. Moreover, osg1-1 mutants producing mannitol were more resistant to killing by oxidants produced by a cell-free H2O2-FeSO4-NaI system than were controls. These results indicate that mannitol can (i) function as an intracellular osmolyte in S. cerevisiae, (ii) substitute for glycerol as the principal intracellular osmolyte in S. cerevisiae, and (iii) protect S. cerevisiae from oxidative damage by scavenging toxic oxygen intermediates.
Life History of Sialis (Megaloptera: Sialidae) in a Lentic and Lotic Ecosystem in Central Texas (2006)

We studied the life history and feeding habits of two coexisting and closely related sister species of Sialis (Sialis itasca Ross and Sialis velata Ross) from a reservoir and river in central Texas. Measurement of larval head capsules and emergence showed the two species to have 10 larval instars, and the seasonal distribution of immature and adult life stages showed synchronous, seasonal, univoltine life histories with a single cohort. Life history dynamics were somewhat faster in the river, probably due to higher temperatures during the larval growth periods. Larvae exhibited a more rapid larval development rate and earlier prepupal and adult emergence patterns relative to those reported from more northern latitudes. However, a univoltine life cycle appears to represent the norm for Sialis in geographic locations where water temperatures are not limiting to growth and suggests that evolutionary/genetic constraints play a greater role in regulating life history in these insects than environmental factors. Analysis of larval diets showed prey consumed by members of both populations consisted of ostracods, oligochaetes and chironomids.
Conception des oursins à base de nanofils de ZnO pour des applications en photovoltaïques (2016)

International audience
ChemInform Abstract: Triflic Anhydride Mediated Synthesis of Imidazo[1,5‐a]azines. (2013)

Abstract A wide range of imidazo[1,5‐a]azines is constructed using a mild cyclodehydration/aromatization reaction triggered by the use of triflic anhydride and 2‐methoxypyridine.
Enhanced AMVP mechanism based adaptive motion search range decision algorithm for fast HEVC coding (2014)

This paper presents an enhanced AMVP mechanism and an adaptive motion search range algorithm to reduce the coding complexity of the high efficiency video coding (HEVC) standard. The performance of motion estimation highly depended on the selection of advanced motion vector prediction (AMVP) mechanism. With this point of view, we firstly design a new selection algorithm to increase the accuracy of AMVP. After getting an accurate motion vector predictor (MVP), we analyze the relationship of motion vector difference (MD) between MVP and motion vector (MV) to design an adaptive motion search range algorithm. Experimental results show that the proposed algorithms can not only decrease the coding complexity but also keep the coding performance.
Hydroxyapatite coating on damaged tooth surfaces by immersion (2009)

Hydroxyapatite (HAp) was coated on scratched areas of a human tooth and HAp disks by the immersion method in a HAp colloidal solution (< or =20 microm of average diameter dispersed in DI water). The surface morphologies of the scratched area after immersion for 1-3 months were investigated showing that the damaged surfaces were remarkably recovered. Then, the mechanical property and chemical stability of the HAp coating layers on both specimens were determined via the Vickers hardness test and concentration measurement of extracted Ca2+ ions, respectively, after strong acidic treatment. The cellular behavior of mouse calvaria-derived pre-osteoblastic cells (MC3T3-E1) was also examined on the HAp layers regenerated on micro-scratched HAp disks for the purpose of their potential applications on maxillofacial bone conservation and reconstruction for prosthetic dentistry, and artificial disk preparation of a vertebral column. The notable loss of Ca2+ ions under a highly acidic condition was not observed in the layers coated by HAp adsorption, indicating that the coating surface was well adhered with the original surfaces of the respective specimen. Moreover, the HAp adsorption did not adversely affect the adhesion, growth and proliferation of MC3T3-E1 cells on the coated HAp layers for up to 21 days. These results suggest that the HAp coating on the scratched areas of the tooth would be effectively applicable for the development of long-term prevention of micro-cleavage and tooth health supporters to reduce discoloration and further maxillofacial and orthopedic applications.
Risperidone for Treatment-Refractory Major Depressive Disorder (2007)

Risperidone augmentation produced a statistically significant mean reduction in depression symptoms, substantially increased remission and response, and improved other patient- and clinician-rated measures. ClinicalTrials.gov registration number: NCT00095134.
Staphylococcus aureus alpha-toxin permeabilizes the basolateral membrane of a Cl(-)-secreting epithelium (1992)

Apical membrane ion channels control the rate of transepithelial electrolyte transport in many epithelia. One way to study such channels in their native location, the apical membrane, is to eliminate the resistance of the basolateral membrane to ion flow. Then the opening and closing of apical channels can be measured as a transepithelial current, free from the influence of basolateral membrane transport processes. To develop a method that would permeabilize an epithelial basolateral membrane to ions and nucleotides, we examined the effect of Staphylococcus aureus alpha-toxin on the Cl(-)-secreting T84 epithelial cell line. alpha-Toxin permeabilized the basolateral, but not the apical membrane to Cl-, adenosine 3',5'-cyclic monophosphate (cAMP), and GTP. However, the integrity of signal-transduction pathways, the regulation of apical membrane Cl- channels, and the transepithelial resistance remained intact. In the course of examining the effect of ATP, we found that the basolateral membrane contained purinergic receptors that both stimulated Cl- secretion on their own and, at high concentrations, inhibited cAMP-induced Cl- secretion. These effects of extracellular ATP were eliminated after prolonged exposure to ATP, suggesting receptor downregulation. In addition, depletion of intracellular ATP following permeabilization prevented cAMP-dependent regulation of apical Cl- channels. We conclude that alpha-toxin may prove to be a useful tool for studying the regulation and properties of apical membrane ion channels.
Peroxidase Activity of Myoglobin Is Enhanced by Chemical Mutation of Heme-Propionates (1999)

Peroxidase activity of a myoglobin reconstituted with a chemically modified heme 1 is reported. The heme 1 bearing a total of eight carboxylates bound to the terminal of propionate side chains is incorporated into apomyoglobin from horse heart to obtain a new reconstituted myoglobin, rMb(1), with a unique binding domain structure. The UV−vis, CD, and NMR spectra of rMb(1) are comparable with those of native myoglobin, nMb. The mixing of rMb(1) with hydrogen peroxide yields a peroxidase compound II-like species, rMb(1)-II, since the spectrum of rMb(1)-II is identical with that observed for nMb. Stoichiometric oxidation of several small molecules by rMb(1)-II, demonstrates the significant reactivity. (i) The oxidation of cationic substrate such as [Ru(NH3)6]2+ by rMb(1)-II is faster than that observed for oxoferryl species of nMb, nMb-II. (ii) Anionic substrates such as ferrocyanide are unsuitable for the oxidation by rMb(1)-II. (iii) Oxidations of catechol, hydroquinone, and guaiacol are dramatically enhanced by rMb(1)-II (14−32-fold) compared to those observed for nMb-II. Thus, the chemical modification of heme-propionates can alter substrate specificity. Steady-state kinetic measurements indicate that both the reactivity and substrate affinity toward guaiacol oxidation by rMb(1) are improved, so that the specificity, kcat/Km, is 13-fold higher than that in nMb. This result strongly suggests that the artificially modified heme-propionates may increase the accessibility of neutral aromatic substrates to the heme active site. The present work demonstrates that the chemical mutation of prosthetic group is a new strategy to create proteins with engineered function.
uv gas laser studies. Semiannual technical report. [Electron-beam excited high-pressure Xe] (1973)

Temporal narrowing of the optical pulse in an E-beam excited high-pressure xenon laser substantiates the evidence of laser oscillations in molecular xenon reported earlier. Using a hole coupled output mirror, an energy of 0.1J was measured in a calorimeter; this corresponds to a peak power of 10 MW demonstrating that a high-power laser in the vacuum ultraviolet has been achieved.
Polarized radiation thermometry of silicon wafers near room temperature (2004)

Silicon semiconductor wafers near room temperature are semitransparent at a wavelength more than 1.1 /spl mu/m, which makes radiation thermometry near room temperature difficult. We have measured apparent radiances of silicon wafers with oxide film (SiO/sub 2/) near room temperature from the view point of spectral, directional and polarized properties, and obtained in turn apparent polarized emissivities and transmissivities of the wafers. Based on the experimental results, we have proposed radiation thermometry of silicon wafers near room temperature.
Narrow-row soybean and a cereal rye cover crop suppress glyphosate-resistant horseweed (Conyza canadensis) (2022)

Abstract Alternative strategies are needed for management of glyphosate-resistant (GR) horseweed in soybean. Integrating a cereal rye cover crop with soybean planted in narrow rows may improve control and reduce herbicide selection pressure for herbicide-resistant horseweed biotypes. Four site-years of experiments were conducted in Michigan to determine whether fall-planted cereal rye terminated with glyphosate 1 wk prior to (early termination) or 1 wk after (planting green) planting in combination with narrow-row soybean improved GR horseweed management. At postemergence (POST) herbicide application, horseweed biomass was reduced by 71% to 90% when soybean was planted into cereal rye, regardless of termination time, compared with no cover across all row widths. Planting green or narrow-row soybean suppressed horseweed through soybean harvest. When glyphosate was applied POST (noneffective), horseweed biomass was 36% to 46% lower when planting green compared with early terminated cereal rye and no cover. Similarly, planting soybean in 19- and 38-cm rows reduced horseweed biomass by 48% and 28%, respectively, compared with 76-cm rows. Cereal rye did not affect soybean yield pooled over 3 of 4 site-years; however, narrow row soybean yielded 11% to 18% higher than 76-cm rows. Soybean yield was 11% higher when an effective POST herbicide was applied. In conclusion, fall-seeded cereal rye or narrow-row soybean suppressed horseweed compared with no cover and 76-cm rows; however, the effects of early termination did not last throughout the growing season in most cases. Delaying cover crop termination by planting green reduced horseweed biomass and density through soybean harvest, but reduced yield in 1 site-year due to an increased incidence of white mold. These cultural practices have a positive influence on suppressing horseweed that should be part of an overall horseweed management strategy; however, the use of an effective POST herbicide is still needed for complete season-long horseweed management.
Antigen-Specific Regulation of Myeloma Cell Differentiation in Vivo by Carrier-Specific T Cell Factors and Macrophages (1978)

Abstract Previous studies demonstrated that: i) the TNP-binding myeloma MOPC-315 differentiated during in vivo growth in diffusion chambers (DC) implanted i.p. into normal BALB/c mice, and ii) the myeloma cell differentiation was regulatable by carrier-specific presentation of TNP to MOPC-315 cells in carrier-primed mice. In those studies, promotion and suppression of MOPC-315 differentiation occurred in the presence of carrier-specific helper and suppressor activities, respectively. In the present studies, we demonstrate that carrierspecific regulation of MOPC-315 differentiation can be adoptively transferred to normal mice with carrierprimed T lymphocytes. In addition, the induced regulation of MOPC-315 differentiation is abrogated when macrophages are not present with MOPC-315 cells in the DC. These studies establish the immunologic basis of myeloma cell regulation and suggest that soluble, carrierspecific helper and suppressor factors of T cell origin regulate MOPC-315 differentiation directly or in collaboration with macrophages.
High risk of breast cancer in women with biallelic pathogenic variants in CHEK2 (2020)

These data suggest that biallelic CHEK2 PV carriers have a higher risk for breast cancer, are more likely to be diagnosed younger, and to have multiple primary breast cancers compared to monoallelic carriers. Biallelic carriers also appear to have a higher risk of cancer overall. Therefore, more aggressive management may be appropriate for women with biallelic PVs in CHEK2 compared with current recommendations for monoallelic carriers.
Design and preparation of polymeric scaffolds for tissue engineering (2006)

Polymeric scaffolds for tissue engineering can be prepared with a multitude of different techniques. Many diverse approaches have recently been under development. The adaptation of conventional preparation methods, such as electrospinning, induced phase separation of polymer solutions or porogen leaching, which were developed originally for other research areas, are described. In addition, the utilization of novel fabrication techniques, such as rapid prototyping or solid free-form procedures, with their many different methods to generate or to embody scaffold structures or the usage of self-assembly systems that mimic the properties of the extracellular matrix are also described. These methods are reviewed and evaluated with specific regard to their utility in the area of tissue engineering.
Practical Relay Attack on Contactless Transactions by Using NFC Mobile Phones (2012)

Contactless technology is widely used in security sensitive applications, including identification, payment and access-control systems. Near Field Communication (NFC) is a short-range contactless technology allowing mobile devices to act primarily as either a reader or a token. Relay attacks exploit the assumption that a contactless token within communication range is in close proximity, by placing a proxy-token in range of a contactless reader and relaying communication over a greater distance to a proxy-reader communicating with the authentic token. It has been theorised that NFC-enabled mobile phones could be used as a generic relay attack platform without any additional hardware, but this has not been successfully demonstrated in practice. We present the first generic practical implementation of a contactless relay attack by using only NFC-enabled mobile phones, requiring only suitable mobile software applications. This implementation reduces the complexity of relay attacks and therefore has potential security implications for current contactless systems.