gebhart/patrepeval huggingface dataset:
Modulation of Polar Lipid Profiles in Chlorella sp. in Response to Nutrient Limitation (2019)

We evaluate the effects of nutrient limitation on cellular composition of polar lipid classes/species in <i>Chlorella</i> sp. using modern polar lipidomic profiling methods (liquid chromatography⁻tandem mass spectrometry; LC-MS/MS). Total polar lipid concentration was highest in nutrient-replete (HN) cultures with a significant reduction in monogalactosyldiacylglycerol (MGDG), phosphatidylglycerol (PG), phosphatidylcholine (PC), and phosphatidylethanolamine (PE) class concentrations for nutrient-deplete (LN) cultures. Moreover, reductions in the abundance of MGDG relative to total polar lipids versus an increase in the relative abundance of digalactosyldiacylglycerol (DGDG) were recorded in LN cultures. In HN cultures, polar lipid species composition remained relatively constant throughout culture with high degrees of unsaturation associated with acyl moieties. Conversely, in LN cultures lipid species composition shifted towards greater saturation of acyl moieties. Multivariate analyses revealed that changes in the abundance of a number of species contributed to the dissimilarity between LN and HN cultures but with dominant effects from certain species, e.g., reduction in MGDG 34:7 (18:3/16:4). Results demonstrate that <i>Chlorella</i> sp. significantly alters its polar lipidome in response to nutrient limitation, and this is discussed in terms of physiological significance and polar lipids production for applied microalgal production systems.
A Spontaneous Translational Fusion ofBacillus cereusPlcR and PapR Activates Transcription of PlcR-Dependent Genes inBacillus anthracisvia Binding with a Specific Palindromic Sequence (2004)

Transformation of Bacillus anthracis with plasmid pUTE29-plcR-papR carrying the native Bacillus cereus plcR-papR gene cluster did not activate expression of B. anthracis hemolysin genes, even though these are expected to be responsive to activation by the global regulator PlcR. To further characterize the action of PlcR, we examined approximately 3,000 B. anthracis transformants containing pUTE29-plcR-papR and found a single hemolytic colony. The hemolytic strain contained a plasmid having a spontaneous plcR-papR intergenic region deletion. Transformation of the resulting plasmid pFP12, encoding a fused PlcR-PapR protein, into the nonhemolytic B. anthracis parental strain produced strong activation of B. anthracis hemolysins, including phosphatidylcholine-specific phospholipase C and sphingomyelinase. The fused PlcR-PapR protein present in a lysate of B. anthracis containing pFP12 bound strongly and specifically to the double-stranded palindrome 5'-TATGCATTATTTCATA-3' that matches the consensus PlcR-binding site. In contrast, native PlcR protein in a lysate from a B. anthracis strain expressing large amounts of this protein did not demonstrate binding with the palindrome. The results suggest that the activation of PlcR by binding of a PapR pentapeptide as normally occurs in Bacillus thuringiensis and B. cereus can be mimicked by tethering the peptide to PlcR in a translational fusion, thereby obviating the need for PapR secretion, extracellular processing, retrieval into the bacterium, and binding with PlcR.
Transpapillary iridium-192 wire in the treatment of malignant bile duct obstruction. (1988)

Twenty four patients with malignant bile duct obstruction were treated with intraluminal radiotherapy using iridium-192 wire inserted through an endoscopically placed nasobiliary catheter. Biliary drainage after treatment was maintained by an endoprosthesis. The median dose of intraluminal radiotherapy was 6000 cGy; two patients with cholangiocarcinoma were given a second course because of disease extension; four patients with pancreatic carcinoma received additional external irradiation (3000 cGy). There was one early death from a cerebrovascular accident (30 day mortality, 4.2%). Cholangitis (30%) was the major early complication and stent blockage (40%) the major late complication; there were no complications directly attributable to radiotherapy. The median survival for patients with pancreatic carcinoma was 250 days and for cholangiocarcinoma, 300 days. This method is technically feasible and may prove safer than the transhepatic technique. The ability of intraluminal irradiation to improve palliation or lengthen survival in patients with malignant bile duct obstruction remains uncertain. Assessment by a prospective, controlled trial is essential.
Use of Pressure-Measuring Insoles to Characterize Gait Parameters in Simulated Reduced-Gravity Conditions (2021)

Prior researchers have observed the effect of simulated reduced-gravity exercise. However, the extent to which lower-body positive-pressure treadmill (LBPPT) walking alters kinematic gait characteristics is not well understood. The purpose of the study was to investigate the effect of LBPPT walking on selected gait parameters in simulated reduced-gravity conditions. Twenty-nine college-aged volunteers participated in this cross-sectional study. Participants wore pressure-measuring insoles (Medilogic GmBH, Schönefeld, Germany) and completed three 3.5-min walking trials on the LBPPT (AlterG, Inc., Fremont, CA, USA) at 100% (normal gravity) as well as reduced-gravity conditions of 40% and 20% body weight (BW). The resulting insole data were analyzed to calculate center of pressure (COP) variables: COP path length and width and stance time. The results showed that 100% BW condition was significantly different from both the 40% and 20% BW conditions, <i>p</i> < 0.05. There were no significant differences observed between the 40% and 20% BW conditions for COP path length and width. Conversely, stance time significantly differed between the 40% and 20% BW conditions. The findings of this study may prove beneficial for clinicians as they develop rehabilitation strategies to effectively unload the individual's body weight to perform safe exercises.
Sketch Arm, Custom Closets Rapid Prototyping System (2013)

We introduce Sketch Arm, a brand new tool for custom closets rapid prototyping that allows end users to sketch a completely customized design proposal regardless of their technological training. Supported in current multi-touch hardware technology, the application is conceived as a highly interactive system, and it can also assist the user with the prototype creation tasks by autonomously generating desirable layouts. Incorporating a simulated annealing algorithm enables this automatic generation of layouts by optimizing the closet inner space. Throughout this paper, we present the main features and capabilities of Sketch Arm. We demonstrate that our system is able to synthesize suitable closet layouts, creating several design proposals for different user profiles.
Synthesis and Characterization of Poly(5,8-quinoxaline ethynylene)s (2011)

A majority of conjugated organic polymers are electron-rich materials, with far fewer electron-poor (i.e., electron accepting) analogues. Here we report the synthesis and preliminary characterization of new class of electron-poor poly(arylene ethynylene)s (PAEs) that contain 5,8-quinoxaline ethynylene repeat units. While various PAE copolymers consisting of alternating electron-rich and electron-poor units display lower bandgaps than poly(phenylene ethynylene)s, the poly(5,8-quinoxaline ethynylene) (PQE) reported in this study has a higher electron affinity and lower bandgap (2.25 eV) than many of these donor–acceptor materials. In comparison to poly(5,8-quinoxaline)s (PQs), which do not have an ethynylene linkage between the quinoxalines, the PQE has a red-shifted absorption spectrum that is consistent with a more highly conjugated and planar backbone. In addition, the PQE has a lower electrochemical reduction potential than both a corresponding PQ and a donor–acceptor alternating PAE copolymer that contains the quinoxaline unit as the electron-poor component.
Fusion of spheroplasts and genetic recombination of Zymomonas mobilis. (1985)

Spheroplasts of Zymomonas mobilis (Z-6) were prepared by cultivating it in a hypertonic medium containing penicillin G or glycine at 30°C for more than 6 hr. The reversion of Spheroplasts to a bacillary form was observed at frequencies of 10-2 to 10-3 when Spheroplasts were incubated on hypertonic solid agar plates overlaid with soft agar. Spheroplast fusion was attempted with polyethylene glycol 6000 by crossing two mutants lacking the ability to ferment sugars. Fusants were selected, and obtained at high frequencies. The properties of a stable fusant are discussed.
Non-invasive digital etching of van der Waals semiconductors (2023)

Abstract The capability to finely tailor material thickness with simultaneous atomic precision and non-invasivity would be useful for constructing quantum platforms and post-Moore microelectronics. However, it remains challenging to attain synchronized controls over tailoring selectivity and precision. Here we report a protocol that allows for non-invasive and atomically digital etching of van der Waals transition-metal dichalcogenides through selective alloying via low-temperature thermal diffusion and subsequent wet etching. The mechanism of selective alloying between sacrifice metal atoms and defective or pristine dichalcogenides is analyzed with high-resolution scanning transmission electron microscopy. Also, the non-invasive nature and atomic level precision of our etching technique are corroborated by consistent spectral, crystallographic and electrical characterization measurements. The low-temperature charge mobility of as-etched MoS 2 reaches up to 1200 cm 2 V -1 s -1 , comparable to that of exfoliated pristine counterparts. The entire protocol represents a highly precise and non-invasive tailoring route for material manipulation.
Flavanones and Related Compounds. II. The Colored Reduction Products of Polyhydroxyflavanones (1946)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTFlavanones and Related Compounds. II. The Colored Reduction Products of PolyhydroxyflavanonesT. A. Geissman and R. O. ClintonCite this: J. Am. Chem. Soc. 1946, 68, 4, 700–706Publication Date (Print):April 1, 1946Publication History Published online1 May 2002Published inissue 1 April 1946https://pubs.acs.org/doi/10.1021/ja01208a052https://doi.org/10.1021/ja01208a052research-articleACS PublicationsRequest reuse permissionsArticle Views145Altmetric-Citations14LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
A high pulse repetition frequency ultrasound system for theex vivomeasurement of mechanical properties of crystalline lenses with laser-induced microbubbles interrogated by acoustic radiation force (2012)

A high pulse repetition frequency ultrasound system for an ex vivo measurement of mechanical properties of an animal crystalline lens was developed and validated. We measured the bulk displacement of laser-induced microbubbles created at different positions within the lens using nanosecond laser pulses. An impulsive acoustic radiation force was applied to the microbubble, and spatio-temporal measurements of the microbubble displacement were assessed using a custom-made high pulse repetition frequency ultrasound system consisting of two 25 MHz focused ultrasound transducers. One of these transducers was used to emit a train of ultrasound pulses and another transducer was used to receive the ultrasound echoes reflected from the microbubble. The developed system was operating at 1 MHz pulse repetition frequency. Based on the measured motion of the microbubble, Young's moduli of surrounding tissue were reconstructed and the values were compared with those measured using the indentation test. Measured values of Young's moduli of four bovine lenses ranged from 2.6 ± 0.1 to 26 ± 1.4 kPa, and there was good agreement between the two methods. Therefore, our studies, utilizing the high pulse repetition frequency ultrasound system, suggest that the developed approach can be used to assess the mechanical properties of ex vivo crystalline lenses. Furthermore, the potential of the presented approach for in vivo measurements is discussed.
Deposit information in gasoline engines: Part I. Base oil effects in sequence VE deposits (1994)

Base oil effects on sludge and deposit formation in the ASTM Sequence VE were studied with blends made using the same American Petroleum Institute (API) SG performance package and the same viscosity improver. One percent of the dispersant was removed from the formulation to accentuate base oil effects. Nine tests on six different 100N base oils were run. Sequence VE test lubricant drain analyses show differences in insolubles, viscosity, and particle size with base stock variations. The most significant base oil factors which can be used to predict Sequence VE sludge ratings are the base oil saturate content, polar content, and volatility. While all oils studied passed the Sequence VE API SG engine varnish and piston varnish requirements, higher levels of poly-nuclear aromatics (PNA`s) are shown to increase the severity of these ratings.
Mining Robotics : 3D Perception of a Roadheader for the Automation of Cutting Operation (1992)

International audience
Efficient Utilization of SIMD Extensions (2005)

This paper targets automatic performance tuning of numerical kernels in the presence of multilayered memory hierarchies and single-instruction, multiple-data (SIMD) parallelism. The studied SIMD instruction set extensions include Intel's SSE family, AMD's 3DNow!, Motorola's AltiVec, and IBM's BlueGene/L SIMD instructions. FFTW, ATLAS, and SPIRAL demonstrate that near-optimal performance of numerical kernels across a variety of modern computers featuring deep memory hierarchies can be achieved only by means of automatic performance tuning. These software packages generate and optimize ANSI C code and feed it into the target machine's general-purpose C compiler to maintain portability. The scalar C code produced by performance tuning systems poses a severe challenge for vectorizing compilers. The particular code structure hampers automatic vectorization and, thus, inhibits satisfactory performance on processors featuring short vector extensions. This paper describes special-purpose compiler technology that supports automatic performance tuning on machines with vector instructions. The work described includes: 1) symbolic vectorization of digital signal processing transforms; 2) straight-line code vectorization for numerical kernels; and 3) compiler back ends for straight-line code with vector instructions. Methods from all three areas were combined with FFTW, SPIRAL, and ATLAS to optimize both for memory hierarchy and vector instructions. Experiments show that the presented methods lead to substantial speedups (up to 1.8 for two-way and 3.3 for four-way vector extensions) over the best scalar C codes generated by the original systems as well as roughly matching the performance of hand-tuned vendor libraries.
Anti‐immunoglobulins induce death by apoptosis in WEHI‐231 B lymphoma cells (1990)

Anti-membrane immunoglobulin (anti-mIg) antibodies exert inhibitory effects in immature B lymphocytes such as WEHI-231 cells. We show here that anti-mIg treatment causes DNA fragmentation (apoptosis) in these cells. We also report that co-treatment with the protein kinase C activator phorbol 12-myristate 13-acetate prevents apoptosis induced by anti-mIg. These results are in agreement with our initial proposal that sensitivity to the toxic effects of anti-mIg reflects, at least partially, altered signal transduction in immature B lymphocytes. Variations in signal transduction pathways during B lymphocyte ontogeny may, therefore, play a critical role in determining whether B cells should be activated or inhibited via their mIg.
Myocardial extracellular volume fraction quantified by cardiovascular magnetic resonance is increased in hypertension and associated with left ventricular remodelling (2016)

Objectives
To determine whether extracellular volume fraction (ECV) quantification by cardiac magnetic resonance (CMR) can demonstrate left ventricle (LV) abnormalities and relationship between ECV and LV remodeling in hypertension (HTN) patients
Asymmetric synthesis of unusual α-amino acids (2003)

The synthesis of enantiomerically pure non-proteinogenic bis and cyclic amino acids 3a,b and achiral amino acid 3c using chiral NiII complex 1 and α,α′-dibromo-o-xylene as a bifunctional agent of alkylation is presented.
Mutations Conferring Resistance to a Hepatitis C Virus (HCV) RNA-Dependent RNA Polymerase Inhibitor Alone or in Combination with an HCV Serine Protease Inhibitor In Vitro (2005)

Compounds A-782759 (an N-1-aza-4-hydroxyquinolone benzothiadiazine) and BILN-2061 are specific anti-hepatitis C virus (HCV) agents that inhibit the RNA-dependent RNA polymerase and the NS3 serine protease, respectively. Both compounds display potent activity against HCV replicons in tissue culture. In order to characterize the development of resistance to these anti-HCV agents, HCV subgenomic 1b-N replicon cells were cultured with A-782759 alone or in combination with BILN-2061 at concentrations 10 times above their corresponding 50% inhibitory concentrations in the presence of neomycin. Single substitutions in the NS5B polymerase gene (H95Q, N411S, M414L, M414T, or Y448H) resulted in substantial decreases in susceptibility to A-782759. Similarly, replicons containing mutations in the NS5B polymerase gene (M414L or M414T), together with single mutations in the NS3 protease gene (A156V or D168V), conferred high levels of resistance to both A-782759 and BILN-2061. However, the A-782759-resistant mutants remained susceptible to nucleoside and two other classes of nonnucleoside NS5B polymerase inhibitors, as well as interferon. In addition, we found that the frequency of replicons resistant to both compounds was significantly lower than the frequency of resistance to the single compound. Furthermore, the dually resistant mutants displayed significantly reduced replication capacities compared to the wild-type replicon. These findings provide strategic guidance for the future treatment of HCV infection.
BRAF mutation and PD-L1 expression in melanoma: Comparison between multiple PD-L1 IHC clones and BRAF mutation evalutated by FDA-approved kits versus NGS. (2017)

e21050 Background: BRAF mutation and PD-L1 expression appear independent in melanoma. We have established that PD-L1 clones 22C3 and 28.8 show almost identical results. In this study we correlated between BRAF mutation and PD-L1 expression as detected by 22C3/28.8 and SP142 in melanoma clinical samples. Methods: Melanoma samples were tested for PD-L1 expression and BRAF mutation. IHC testing for PD-L1 22C3 or 28.8 were tested using FDA-approved kits as recommended. Testing with SP142 (Spring Biosciences; LDT) was performed using standard techniques. BRAF testing in combination with SP142 PD-L1 testing was performed using next generation sequencing covering exons 11 and 15. Samples tested with 22C3 and 28.8 clones were tested using FDA-cleared BRAF kits (Cobas, Therascreen) testing V600 only. Results: 68 samples were tested for PD-L1 expression with clone 22C3, 67 with 28.8, and 56 with SP142. There was no overall statistical difference between the three clones in PD-L1 expression (P = 0.41). For combined 22C3 and 28.8, 61 of 135 cases (45%) had PD-L1 expression and 31 (23%) had BRAF mutation detected using FDA kits (V600). There was no statistical correlation between PD-L1 expression and BRAF mutation in this group (P = 0.9) at any cut-off. In cases tested with SP142 clone, BRAF mutation was detected in 31 cases (55%) by NGS, higher than using the FDA kit (P &lt; 0.0001). In V600 mutations by NGS, 14 cases (25%) were positive, similar FDA kits. In SP142 cases, PD-L1 was positive in 45% of cases. There was no correlation between BRAF mutation and PD-L1 using SP142 expression as a continuous variable (P = 0.59) or cut-off points of 5% or 50%. When cut-off of 20% was used, significant inverse correlation with BRAF mutation (P = 0.004) was identified and was maintained if V600 codon only was evaluated. Conclusions: There is no correlation between BRAF mutation and PD-L1 expression as detected using clones 22C3 and 28.8. With SP142, a negative correlation between PD-L1 expression and BRAF mutation is identified with a 20% cut-off. The rate of BRAF mutations practically doubles when NGS is used and exons 11 and 15 are included in the testing, in contrast to FDA approved testing.
Comparative performance of spectral subtraction and HMM-based speech enhancement strategies with application to hearing and design (2002)

We have investigated effectiveness of several HMM-based speech enhancement strategies in the hearing aid context and compared their performance to a traditional method based on spectral subtraction (also called Wiener filtering). The performance of the various systems has been evaluated using several types of noise likely to be encountered by hearing impaired listeners. Both the objective and subjective evaluations demonstrate consistent superiority of the HMM-based enhancement methods over the spectral subtraction method. The superiority is more evident for sentences contaminated by nonstationary noises at low input SNRs.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Urine Proteomics for Noninvasive Monitoring of Biomarkers in Bronchopulmonary Dysplasia (2022)

In addition to validating numerous proteins, previously found in invasively collected blood, tracheal aspirate, and bronchoalveolar lavage, that have been implicated in BPD pathophysiology, urine proteomics also suggested novel potential therapeutic targets. Ease of access to urine could allow for sequential proteomic evaluations for longitudinal monitoring of disease progression and impact of therapeutic intervention in future studies.