gebhart/patrepeval huggingface dataset:
Development of a Concept Dictionary to Standardize Definitions and Classifications While Working With a Common Repository of Linked Administrative Data (2018)

IntroductionSupporting standardized approaches to common tasks is an important component of quality research using linked administrative data. Standard concept definitions and classifications are vital for ensuring accuracy and consistency in definitions between projects, and improving efficiency and quality. Other leading organizations have published online standard definitions of concepts and classifications.&#x0D; Objectives and ApproachWe developed a comprehensive concept dictionary using a standardized definition template of key components including data sources, codes, scale or range of values, validation details, limitations, SAS code and formats, related concepts, and MeSH terms. A web-based application (built on the Microsoft SharePoint platform) was developed to offer the latest web content authoring capabilities, and advanced search mechanisms enabling the user to search concepts by MeSH terms and key words. It also allowed for navigating concepts through category navigation including clickable categories and sub-categories. Entries will be reviewed annually to ensure the content remains up-to-date.&#x0D; ResultsTo date, ten concepts, with accompanying codes, have been published on the concept dictionary with another ten currently undergoing editorial review. These concepts span a variety of topics such as injuries, mental health and addictions-related outpatient services, and annual physical exams. New concepts written by content experts and reviewed by an editorial committee will be added on an on-going basis; thirty concepts are currently under development.&#x0D; Conclusion/ImplicationsDevelopment of a concept dictionary provides standardized definitions, algorithms and codes to ensure consistency and quality of research and analysis across multiple projects. Future aims include expansion of the internal organizational site to an external site through collaboration with key stakeholders.
Health Fitness Training Responses of Normotensive and Elevated Normotensive Children (1990)

Abstract The purpose of this study was to compare health fitness profiles of normotensive (blood pressure < 108/76) and elevated normotensive (blood pressure ≥ 108/76) children and to evaluate the health fitness training responses of children with higher and lower blood pressures to a regular program of exercise over an eight month period. The subjects were 386 fourth grade students (lower blood pressures = 305; higher blood pressures = 81). They were measured for height and weight and evaluated before and after an exercise intervention program for flexibility, muscular endurance, cardiovascular endurance, and body fat levels. The results show that children with higher blood pressures were fatter and had lower cardiovascular fitness levels before and after the intervention. They had health fitness profiles similar to hypertensive adults. Their rate of health fitness improvement, with training, was similar to children with lower blood pressures. Therefore, elevated normotensive children have an increased risk of cardiovascular disease but can change their risk profile with regular exercise.
A Micromechanics Based Constitutive Model For Brittle Failure at High Strain Rates (2011)

The micromechanical damage mechanics formulated by Ashby and Sammis, 1990, “The Damage Mechanics of Brittle Solids in Compression,” Pure Appl. Geophys., 133(3), pp. 489–521, and generalized by Deshpande and Evans 2008, “Inelastic Deformation and Energy Dissipation in Ceramics: A Mechanism-Based Constitutive Model,” J. Mech. Phys. Solids, 56(10), pp. 3077–3100. has been extended to allow for a more generalized stress state and to incorporate an experimentally motivated new crack growth (damage evolution) law that is valid over a wide range of loading rates. This law is sensitive to both the crack tip stress field and its time derivative. Incorporating this feature produces additional strain-rate sensitivity in the constitutive response. The model is also experimentally verified by predicting the failure strength of Dionysus-Pentelicon marble over strain rates ranging from ~10^(−6) to 10^3s^(−1). Model parameters determined from quasi-static experiments were used to predict the failure strength at higher loading rates. Agreement with experimental results was excellent.
Quantification of ordering at a solid-liquid interface using plasmon electron energy loss spectroscopy (2015)

We present an in situ electron energy loss spectroscopy (EELS) study of ordering of liquid Al at various Al-Al2O3 interfaces. This technique utilizes precise measurements of the shifts in bulk plasmon resonance and their sensitivity to the valence electron density. Plasmon EELS combined with high resolution transmission electron microscopy provides information regarding the chemical composition in liquid Al at Al-Al2O3 interfaces. Preferential oxygen segregation to the (0006) Al2O3 plane was verified, and the (101¯2) Al2O3 plane was found to contain the lowest amount of segregated species.
Theoretical and Experimental Investigations on the Reactions of Positively Charged Phenyl Radicals with Aromatic Amino Acids (2005)

The chemical behavior of positively charged phenyl radicals 3-dehydro-N-phenylpyridinium (a), N-(3-dehydro-5-chlorophenyl)pyridinium (b), and N-(3-dehydrophenyl)pyridinium (c) toward L-tyrosine, phenylalanine, and tryptophan was investigated in the gas phase both theoretically by performing molecular orbital calculations and experimentally by using FT/ICR mass spectrometry. All radicals react with phenylalanine and tryptophan nearly at the collision rate. The overall reactivity of the radicals toward tyrosine follows the order a > b > c, which is consistent with the electron affinity (EA) ordering of the radicals. The higher the electrophilicity (or EA) of the radical, the greater the reactivity. As expected, all radicals abstract a hydrogen atom from all of the amino acids. However, the most electrophilic radical a was also found to react with these amino acids via NH2 abstraction. A new reaction observed between radicals a-c and aromatic amino acids is the addition of the radical to the aromatic ring of the amino acid followed by Calpha-Cbeta bond cleavage, which leads to side-chain abstraction by the radical.
Update on egg allergy in children (2015)

Egg allergy is one of the most common food allergies in children and has a wide spectrum of clinical presentation including anaphylaxis. Many studies suggested egg-specific IgE cutoff values (diagnostic decision point) and skin prick test size that predict a clinical allergic reaction without oral food challenges. Some patients may react to all forms of egg including raw egg, but many egg-allergic patients tolerate baked egg products. A few studies reported that a high concentration of ovomucoid-specific IgE antibody indicates a high risk of reacting to heated egg white. Recently it has been suggested that regular ingestion of baked egg products may hasten tolerance development. Egg allergy may be more persistent than previously thought. The treatment of egg allergy still relies on dietary avoidance of egg-containing foods until tolerance has developed. In recent years there has been increasing success in clinical trials of egg oral immunotherapy, and oral immunotherapy can be a promising treatment modality for providing protection from reactions caused by accidental egg exposure. However, concerns regarding the safety and long-term efficacy still preclude the general use of oral immunotherapy in clinical practice. In this article, the recent literature regarding egg allergens, clinical presentation, diagnosis, management and natural history of egg allergy will be reviewed.
A Polymer-Based Capacitive Sensing Array for Normal and Shear Force Measurement (2010)

In this work, we present the development of a polymer-based capacitive sensing array. The proposed device is capable of measuring normal and shear forces, and can be easily realized by using micromachining techniques and flexible printed circuit board (FPCB) technologies. The sensing array consists of a polydimethlysiloxane (PDMS) structure and a FPCB. Each shear sensing element comprises four capacitive sensing cells arranged in a 2 × 2 array, and each capacitive sensing cell has two sensing electrodes and a common floating electrode. The sensing electrodes as well as the metal interconnect for signal scanning are implemented on the FPCB, while the floating electrodes are patterned on the PDMS structure. This design can effectively reduce the complexity of the capacitive structures, and thus makes the device highly manufacturable. The characteristics of the devices with different dimensions were measured and discussed. A scanning circuit was also designed and implemented. The measured maximum sensitivity is 1.67%/mN. The minimum resolvable force is 26 mN measured by the scanning circuit. The capacitance distributions induced by normal and shear forces were also successfully captured by the sensing array.
Critically appraised topic on adverse food reactions of companion animals (4): can we diagnose adverse food reactions in dogs and cats with in vivo or in vitro tests? (2017)

Testing for serum food-specific IgE and IgG showed low repeatability and, in dogs, a highly variable accuracy. In cats, the accuracy of testing for food-specific IgE was low. Lymphocyte proliferation tests were more frequently positive and more accurate in animals with AFR, but, as they are more difficult to perform, they remain currently a research tool. All other reported tests were only evaluated by individual studies with small numbers of animals. Negative patch test reactions have a very high negative predictability in dogs and could enable a choice of ingredients for the elimination diet in selected patients. Gastroscopic and colonoscopic testing as well as food-specific fecal IgE or food-specific serum IgG measurements appear less useful. Currently, the best diagnostic procedure to identify AFRs in small animals remains an elimination diet with subsequent provocation trials.
Instantaneous frequency and amplitude modulation of EEG in the hippocampus reveals state dependent temporal structure (2008)

EEG and LFP activity reflect the dynamic and organized interactions of neural ensembles; therefore, it may be possible to use the features of brain rhythms to determine the computational state of a neuronal network. When neuronal networks are activated, physical principles predict that the frequency content of the field potential should reflect the network state, per se, and ergo the state transition. A novel way for characterizing brain states is by quantifying the temporal structure of AM and FM activity (change in amplitude and frequency over time) for brain rhythms of interest. The concept of AM and FM, in the quantitative sense, is virtually unexplored in systems neuroscience. This is not surprising considering estimation of FM activity requires fine temporal and precise estimation of instantaneous frequency. For AM activity, the absolute value of the Hilbert transform is sufficient. Here, we outline a practical pole tracking algorithm which uses a Kalman filter for univariate AR processes to estimate instantaneous frequency. We demonstrate the filter performance using simulated chirp and real EEG/LFP data recorded from the rat hippocampus; and show that AM/FM activity in EEG/LFP is temporally structured and dependent on behavioral and cognitive state. This algorithm has the potential to be a practical tool for characterizing fundamental structure in electrophysiology data and classifying computational states in the brain.
Optimum measurement condition for V ( x ) method using the line-focus-beam ultrasonic-material-characterization system (2021)

Abstract Optimum measurement condition of the V ( x ) method proposed as a fast scanning technique of the line-focus-beam ultrasonic material characterization system was theoretically investigated to realize more accurate measurement. Through numerical calculation, it was clarified that the appropriate defocus position z m with higher sensitivity used in the V ( x ) measurement depended on the waveform attenuation of V ( z ) curves. It was also clarified that the measurement error caused by the focal distance change due to temperature change in the water coupler could be reduced by choosing the lower defocus position as z m . A method for measuring the surface profile of the specimen by applying the V ( x ) method with z m &gt; 0 was proposed in order to correct measurement error due to warpage of specimen surface.
Prostanoids are not involved in postocclusive reactive hyperaemia in human skin (2015)

Several mediators contribute to postocclusive reactive hyperaemia (PORH) in the skin, including sensory nerves and endothelium-derived hyperpolarizing factors. The main objective of this study was to investigate the specific involvement of prostanoids in human skin PORH. We tested the effect of the inhibition of cyclo-oxygenases (COX) by 4 mm ketoprofen, infused through microdialysis fibers inserted into the healthy volunteers forearm skin, following 5 min brachial artery occlusion. Skin microvascular blood flux was recorded using two-dimensional Laser Speckle Contrast Imaging. Maximal cutaneous vascular conductance (CVCmax ) was obtained following the perfusion of 29 mm sodium nitroprusside. A systematic review of the effects of COX inhibitors on skin peak PORH was also performed. We observed no significant difference between ketoprofen and placebo for the PORH peak (78 ± 8 and 71 ± 19% CVCmax , respectively) and area under the curve (2951 ± 721 and 2490 ± 936% CVCmax .s). A meta-analysis showed a substantial heterogeneity between studies, with overall a neutral effect of COX inhibition on peak PORH. Cyclo-oxygenase inhibition does not alter skin PORH, suggesting no involvement of prostanoids in cutaneous postocclusive vasodilatation in healthy humans.
Modeling and simulation of crossing magnetic nanoparticles through Blood Brain Barrier (BBB) (2014)

Crossing the Blood Brain Barrier (BBB), despite its tight junctions, is of the great importance in a plethora of medical applications. As a result, this work is dedicated to molecular dynamics (MD) simulation of crossing through the BBB particularly under the effect of magnetic force. For this purpose, two cases of a coated gold nanocparticle with insulin and uncoated gold nanoparticle have been considered; there, the dominant governing parameters in each case are changed to identify the optimized condition for crossing nanoparticles. These parameters are of biological (ligand-receptor binding affinity), biophysical (membrane surface receptor density ratio and non-specific interaction parameter) or geometrical (size of components) origin. The most important part of this study is MD simulation of nanoparticles under the effect of magnetic field and the result shows that for crossing through BBB what force profile must be provided by the magnetic field.
Easy Ambient Sonic-Spray Ionization-Membrane Interface Mass Spectrometry for Direct Analysis of Solution Constituents (2008)

Using a cellulose dialysis membrane and aqueous solutions of common drugs as a proof-of-principle example, we demonstrate that solid but permeable and flexible membranes can be used as interfaces for the direct analysis of solution constituents via easy ambient sonic-spray ionization mass spectrometry. This new combination of MS techniques, herein termed EASI-MIMS, promotes droplet pick up of the analyte from the external surface of the membrane from where the analyte has selectively permeated for proper mass spectrometry characterization and quantitation. Possible application of EASI-MIMS such as the environmental analyses of effluents, on-line monitoring of fermentation and biotransformations and on-line pharmacokinetic blood analysis are discussed.
Identification of the Photoreceptor Transcriptional Co-Repressor SAMD11 as Novel Cause of Autosomal Recessive Retinitis Pigmentosa (2016)

Retinitis pigmentosa (RP), the most frequent form of inherited retinal dystrophy is characterized by progressive photoreceptor degeneration. Many genes have been implicated in RP development, but several others remain to be identified. Using a combination of homozygosity mapping, whole-exome and targeted next-generation sequencing, we found a novel homozygous nonsense mutation in SAMD11 in five individuals diagnosed with adult-onset RP from two unrelated consanguineous Spanish families. SAMD11 is ortholog to the mouse major retinal SAM domain (mr-s) protein that is implicated in CRX-mediated transcriptional regulation in the retina. Accordingly, protein-protein network analysis revealed a significant interaction of SAMD11 with CRX. Immunoblotting analysis confirmed strong expression of SAMD11 in human retina. Immunolocalization studies revealed SAMD11 was detected in the three nuclear layers of the human retina and interestingly differential expression between cone and rod photoreceptors was observed. Our study strongly implicates SAMD11 as novel cause of RP playing an important role in the pathogenesis of human degeneration of photoreceptors.
The correlation between the percent of CD3- CD56+ cells and NK precursor function. (2006)

The number and function of human natural killer (NK) cells are generally assessed to monitor the baseline of immune function, the effect of treatment, the progress of malignancy or metastases and diseases. NK cells recognise and kill target cells in the absence of prior sensitisation and are able to defend the host from infection or prevent the progression of a disease. Human NK cells express CD16 and CD56 which are (massively) being used as a major hallmark for the NK cell. The purpose of this study was to identify the unique subsets of peripheral blood mononuclear cells (PBMC) (%CD3-CD56+ cells) by flow cytometry and to determine whether there is any correlation with functionally mature progeny of (NKp) precursor after five days of culture. The correlation was analysed using samples obtained from 120 Caucasian patients. 20-30ml of whole blood was collected in sterile tube containing preservative free sodium heparin and a similar sample was obtained after five days. Maturation of NKp required the continuous presence of recombinant interleukin 2 (rIL-2), or interleukin 15 (rIL-15) and functional maturity of NK cells was determined by their ability to lyse target cells from the K562 cell line. The NK precursor frequency was measured by limiting dilution analysis (LDA), which The NKpf assay was set up with a range of cell dilutions from 40,000 to 625 per 100ml/well in 96 well culture plates. At the end of the culture period the K562 cell line labelled with Europium (Eu-K562) was added and Eu release measured in culture supernatants using time-resolved fluorometry. The PBMC were set up in parallel cultures under various conditions . On day five cells were collected from culture plates and adjusted to 1x10 cells/ml and then mixed. The mixture was incubated and anti CD3 and anti CD56 were added. NK cells were enumerated in 120 patients by double staining with a combination of anti-CD3- and anti-CD56+. The results of these Immunophenotyping studies by flow cytometry showed no correlation between the NKpf (natural killer precursor frequency) and the percent of CD3-CD56+ cells expressed after five days confirming that CD56 was inadequate as a unique marker for functional NK cells.
Synthesis of 6-Methylindole-4,7-quinone and Anti-tumor Activities of Its Related Indolequinones (2006)

We synthesized 6-methylindole-4,5-quinone (1b) in order to clarify the structure of natural product, 5-methylindole-4,5-quinone (1a) isolated from Drupella fragum.The synthesis features the construction of the indole ring based on an electrocyclic reaction of a 3-alkenyl-2-propargylpyrrole intermediate.Two synthetic methylindolequinones and their related compounds were examined in human lung cancer cell line NCI-H460 and human breast cancer cell line MDA-MB-231.It is well known that many synthetic methodologies of the indole ring have been provided by the construction of a pyrrole ring from the benzene ring.On the other hand, there are not so many reports of indole synthesis by the construction of a benzene ring from pyrrole. 1 We are interested in the development of a new indole synthesis through a benzo-annulation based on an application of an allene-mediated electrocyclic reaction 2 using the pyrrole [b]-bond.
Purification, crystallization and X-ray diffraction analysis of a recombinant Fab that recognizes a human blood-group antigen (2004)

The NNA7 Fab fragment recognizes the human glycopeptide N blood-group antigen and has a high affinity for N-type glycophorin A (GPA). To provide insight into how antibodies recognize glycopeptide antigens, soluble Fab fragments were expressed in Escherichia coli, purified and crystallized using the hanging-drop vapor-diffusion method at 293 K. The best crystals were obtained from solutions of PEG monomethyl ether 5000 containing 4-8 mM yttrium chloride (YCl3). This rare-earth ion, which could be substituted with various lanthanides, changed the habit of crystals from multinucleated rods with a diffraction limit of 4.25 A resolution to a diamond-shaped morphology that grew as single crystals and diffracted X-rays to 1.75 A resolution. Data were collected that indicated that the crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 57.9, b = 77.1, c = 118.1 A and one Fab fragment per asymmetric unit. A molecular-replacement solution has been obtained and 86% of the molecule was fitted by use of an automated refinement procedure (ARP).
The science of programming dense linear algebra libraries (2007)

This tutorial focuses on how techniques from computer science allow high-performance programming to be elevated from an art that is practiced by the high priests of high performance to a science that exposes a systematic methodology that is accessible to the masses and naturally supports the multicore revolution of architecture design that has arrived.