gebhart/patrepeval huggingface dataset:
Structural Elucidation, Aggregation, and Dynamic Behaviour of N,N,N,N‐Copper(I) Schiff Base Complexes in Solid and in Solution: A Combined NMR, X‐ray Spectroscopic and Crystallographic Investigation (2021)

A series of Cu(I) complexes of bidentate or tetradentate Schiff base ligands bearing either 1-<i>H</i>-imidazole or pyridine moieties were synthesized. The complexes were studied by a combination of NMR and X-ray spectroscopic techniques. The differences between the imidazole- and pyridine-based ligands were examined by <sup>1</sup>H, <sup>13</sup>C and <sup>15</sup>N NMR spectroscopy. The magnitude of the <sup>15</sup>N<sub>imine</sub> coordination shifts was found to be strongly affected by the nature of the heterocycle in the complexes. These trends showed good correlation with the obtained Cu-N<sub>imine</sub> bond lengths from single-crystal X-ray diffraction measurements. Variable-temperature NMR experiments, in combination with diffusion ordered spectroscopy (DOSY) revealed that one of the complexes underwent a temperature-dependent interconversion between a monomer, a dimer and a higher aggregate. The complexes bearing tetradentate imidazole ligands were further studied using Cu K-edge XAS and VtC XES, where DFT-assisted assignment of spectral features suggested that these complexes may form polynuclear oligomers in solid state. Additionally, the Cu(II) analogue of one of the complexes was incorporated into a metal-organic framework (MOF) as a way to obtain discrete, mononuclear complexes in the solid state.
Inhibition of Neurogenic Precursor Proliferation by Antisense α Thyroid Hormone Receptor Oligonucleotides (1995)

Thyroid hormone 3,5,3'-triiodo-L-thyronine (T3) is required for normal brain development in vertebrates. T3 acts through two classes of nuclear receptors (TR alpha and TR beta) that have distinct developmental spatial and temporal distributions suggesting different functions during neuronal development. One possibility is that TR alpha, which is expressed early in embryogenesis, is involved in neuroblast proliferation. To test this hypothesis we used the embryonic chick optic lobe, as we found that T3 stimulates [3H]thymidine incorporation in this tissue both in vivo and in vitro during embryonic days 6-9. We applied oligonucleotides (ODNs) against TR alpha and TR beta to primary cultures of chick optic lobes. By employing a cationic lipid vector we could use very low ODN concentrations (< 150 nM). Antisense ODNs against TR alpha significantly inhibited [3H]thymidine incorporation, whereas antisense TR beta had no significant effect. However, both ODNs inhibited expression of TRs, as they blocked transcription from a T3-activated reporter gene. Random ODNs used as controls had no significant effect on [3H]thymidine incorporation or on T3-dependent transcription. These observations suggest that TR alpha is implicated in neuroblast proliferation and add credence to the hypothesis that the multiplicity of nuclear receptors allows for specific actions of T3 during development.
U6 is unsuitable for normalization of serum miRNA levels in patients with sepsis or liver fibrosis (2013)

MicroRNA (miRNA) levels in serum have recently emerged as potential novel biomarkers for various diseases. miRNAs are routinely measured by standard quantitative real-time PCR (qPCR); however, the high sensitivity of qPCR demands appropriate normalization to correct for nonbiological variation. Presently, RNU6B (U6) is used for data normalization of circulating miRNAs in many studies. However, it was suggested that serum levels of U6 themselves might differ between individuals. Therefore, no consensus has been reached on the best normalization strategy in 'circulating miRNA'. We analyzed U6 levels as well as levels of spiked-in SV40-RNA in sera of 44 healthy volunteers, 203 intensive care unit patients and 64 patients with liver fibrosis. Levels of U6 demonstrated a high variability in sera of healthy donors, patients with critical illness and liver fibrosis. This high variability could also be confirmed in sera of mice after the cecal ligation and puncture procedure. Most importantly, levels of circulating U6 were significantly upregulated in sera of patients with critical illness and sepsis compared with controls and correlated with established markers of inflammation. In patients with liver fibrosis, U6 levels were significantly downregulated. In contrast, levels of spiked-in SV40 displayed a significantly higher stability both in human cohorts (healthy, critical illness, liver fibrosis) and in mice. Thus, we conclude that U6 levels in the serum are dysregulated in a disease-specific manner. Therefore, U6 should not be used for data normalization of circulating miRNAs in inflammatory diseases and previous studies using this approach should be interpreted with caution. Further studies are warranted to identify specific regulatory processes of U6 levels in sepsis and liver fibrosis.
SiC Power Devices on QUASIC and SiCOI Smart-Cut<sup>®</sup> Substrates: First Demonstrations (2003)

International audience
Antibody association with HER-2/neu–targeted vaccine enhances CD8+ T cell responses in mice through Fc-mediated activation of DCs (2008)

The pathogenic nature of cancer is attributed, at least in part, to the ability of tumors cells to induce systemic and local mechanisms of immune tolerance. However, we previously reported that tumor-free survival in up to 100% of tolerized HER-2/neu transgenic mice can be achieved by administration of neu-specific mAb concurrently with a HER-2/neu-expressing, GM-CSF-secreting whole cell vaccine. In this report, we show that one mechanism of improved antitumor activity induced by the combination of these 2 neu-targeted interventions was enhanced Fc-mediated activation of APCs. Specifically, in vivo studies demonstrated localization of radiolabeled neu-specific mAb at the vaccine site. Subsequently, increased accumulation of neu-specific mAb at the vaccine-draining lymph node correlated with increased vaccine cell uptake by DCs in vivo. This led to enhancement of CD8(+) neu-specific T cell function in terms of proliferation, cytokine production, and central memory development. Thus, the administration of a neu-specific mAb with a neu-targeted GM-CSF-secreting tumor vaccine enhanced induction of neu-specific CD8(+) T cells through Fc-mediated activation of DCs. This multimodality attack on the same tumor antigen may have the potential to overcome tolerance to self antigens and weaken the immunosuppressive networks within the tumor microenvironment.
Seed quality of high protein corn lines in low input and conventional farming systems (2008)

Seed quality is a major issue for crop establishment especially in low input farming systems, where varieties often grow under more stressful conditions than in conventional farming systems. Corn (Zea mays L.) seed for organic (low input) production will eventually need to be grown organically, thus research is needed to ensure excellent seed quality in organic corn seed production. The objective of this study was to compare seed quality and composition differences between a group of high protein corn genotypes grown under low input and conventional farming systems, and to compare the relative seed quality of these genotypes to two well known inbreds, B73 or Mo17. Twenty high protein breeding genotypes were planted during two growing seasons in conventional and organic nurseries near Ames, Iowa, to produce seeds for laboratory tests. The germination, saturated cold, accelerated aging, and soak test percentages of seeds produced organically were 5 to 11% lower than for seeds produced conventionally. Protein, measured by near-infrared reflectance, was unaffected by the production location, but the oil content of seeds produced organically was significantly higher (between 0.2 and 0.3% higher) than in the conventional system. Location by genotype interactions for most tests were non significant both years, indicating that genotypes selected for high seed quality in a conventional system will also have high seed quality when grown in a low input, organic system.
Mild Metal-Free Sequential Dual Oxidative Amination of C(sp3)–H bonds: Efficient Synthesis of Imidazo[1,5-a]pyridines (2013)

A metal-free sequential dual oxidative amination of C(sp3)–H bonds under ambient conditions was the first developed, affording imidazo[1,5-a]pyridines in good to excellent yields. The reaction was involved in two oxidative C–N couplings and one oxidative dehydrogenation process with six hydrogen atoms removed.
Synthesis of (-)-Oleocanthal (2006)

(-)-Oleocanthal, an irritant found in extra virgin olive oil, is an anti-inflammatory agent similar in potency to ibuprofen and an anti-oxidant similar in potency to α-tocopherol. The absolute configuration was established by total synthesis of both enantiomers from Δ-ribose (12 steps, 7% overall). Both enantiomers have similar potency.
Recent advances in solid-state lasers (1984)

Get PDF Email Share Share with Facebook Tweet This Post on reddit Share with LinkedIn Add to CiteULike Add to Mendeley Add to BibSonomy Get Citation Copy Citation Text P. F. Moulton, "Recent advances in solid-state lasers," in Conference on Lasers and Electro-Optics, D. Hodges, W. Silfvast, G. Bjorklund, and E. Hinkley, eds., OSA Technical Digest (Optica Publishing Group, 1984), paper WA2. Export Citation BibTex Endnote (RIS) HTML Plain Text Citation alert Save article
Review Molecular mechanisms of autoimmunity triggered by microbial (2005)

Autoimmunity can be triggered by microbial infection. In this context, the discovery of Toll-like receptors (TLRs) provides new insights and research perspectives. TLRs induce innate and adaptive antimicrobial immune responses upon exposure to common pathogen-associated molecules, including lipopeptides, lipopolysaccharides, and nucleic acids. They also have the potential, however, to trigger autoimmune disease, as has been revealed by an increasing number of experimental reports. This review summarizes important facts about TLR biology, available data on their role in autoimmunity, and potential consequences for the management of patients with autoimmune disease.
Molecular Basis for Selectivity of High Affinity Peptide Antagonists for the Gastrin-releasing Peptide Receptor (2001)

Few gastrointestinal hormones/neurotransmitters have high affinity peptide receptor antagonists, and little is known about the molecular basis of their selectivity or affinity. The receptor mediating the action of the mammalian bombesin (Bn) peptide, gastrin-releasing peptide receptor (GRPR), is an exception, because numerous classes of peptide antagonists are described. To investigate the molecular basis for their high affinity for the GRPR, two classes of peptide antagonists, a statine analogue, JMV594 ([d-Phe(6),Stat(13)]Bn(6-14)), and a pseudopeptide analogue, JMV641 (d-Phe-Gln-Trp-Ala-Val-Gly-His-Leupsi(CHOH-CH(2))-(CH(2))(2)-CH(3)), were studied. Each had high affinity for the GRPR and >3,000-fold selectivity for GRPR over the closely related neuromedin B receptor (NMBR). To investigate the basis for this, we used a chimeric receptor approach to make both GRPR loss of affinity and NMBR gain of affinity chimeras and a site-directed mutagenesis approach. Chimeric or mutated receptors were transiently expressed in Balb/c 3T3. Only substitution of the fourth extracellular (EC) domain of the GRPR by the comparable NMBR domain markedly decreased the affinity for both antagonists. Substituting the fourth EC domain of NMBR into the GRPR resulted in a 300-fold gain in affinity for JMV594 and an 11-fold gain for JMV641. Each of the 11 amino acid differences between the GRPR and NMBR in this domain were exchanged. The substitutions of Thr(297) in GRPR by Pro from the comparable position in NMBR, Phe(302) by Met, and Ser(305) by Thr decreased the affinity of each antagonist. Simultaneous replacement of Thr(297), Phe(302), and Ser(305) in GRPR by the three comparable NMBR amino acids caused a 500-fold decrease in affinity for both antagonists. Replacing the comparable three amino acids in NMBR by those from GRPR caused a gain in affinity for each antagonist. Receptor modeling showed that each of these three amino acids faced inward and was within 5 A of the putative binding pocket. These results demonstrate that differences in the fourth EC domain of the mammalian Bn receptors are responsible for the selectivity of these two peptide antagonists. They demonstrate that Thr(297), Phe(302), and Ser(305) of the fourth EC domain of GRPR are the critical residues for determining GRPR selectivity and suggest that both receptor-ligand cation-pi interactions and hydrogen bonding are important for their high affinity interaction.
Evaluation of long-term home monitoring of blood glucose concentrations in cats with diabetes mellitus: 26 cases (1999–2002) (2004)

Owner compliance with long-term home monitoring appeared to be satisfactory, and home monitoring did not affect the frequency of reevaluation of patients by veterinarians.
Tracking performance of the RLS algorithm applied to an antenna array in a realistic fading environment (2002)

In this paper, frequency domain techniques are used to derive the tracking properties of the recursive least squares (RLS) algorithm applied to an adaptive antenna array in a mobile fading environment, expanding the use of such frequency domain approaches for nonstationary RLS tracking to the interference canceling problem that characterizes the use of antenna arrays in mobile wireless communications. The analysis focuses on the effect of the exponential weighting of the correlation estimation filter and its effect on the estimations of the time variant autocorrelation matrix and cross-correlation vector. Specifically, the case of a flat Rayleigh fading desired signal applied to an array in the presence of static interferers is considered with an AR2 fading process approximating the Jakes' fading model. The result is a mean square error (MSE) performance metric parameterized by the fading bandwidth and the RLS exponential weighting factor, allowing optimal parameter selection. The analytic results are verified and demonstrated with a simulation example.
X-Ray Reflection, A New Tool for Investigating Layered Structures and Interfaces (1991)

Abstract At grazing incidence all X-ray techniques become surface sensitive. Far below the angle of total reflection the X-rays penetrate only 20 to 70 Å into condensed matter. X-ray reflectivity measurements give the density and the thickness of layers on substrates and the roughness of external and internal interfaces. The diffuse scattering in the vicinity of the specular reflection gives, besides the interface roughness, also the height-height correlation of the surface. From the angular dependence of the fluorescence intensity, emitted as a consequence of X-ray absorption, the depth profile of the absorbing species can be deduced. Artificial periodic multilayers give rise to Bragg reflexes and to standing X-ray wave fields, the angular dependence of which give the distribution of atomic species in the periodic stack. A number of examples illustrate the possibilities of the technique.
Effect of destruction of the posterior pituitary on the diuresis from left atrial receptors. (1975)

1. In anaesthetized dogs, stimulation of atrial receptors after destruction of the pituitary gland results in a diuresis. This response was not abolished by the administration of bretylium tosylate and was also observed in a surgically denervated kidney. 2. The diuresis is qualitatively similar to that observed in anaesthetized dogs with intact pituitary glands. 3. It is concluded that the diuresis which results from stimulation of the left atrial receptors is mediated by a blood-borne agent which is not the antidiuretic hormone.
Synthesis of latex particles with surface amino groups (2000)

Monodisperse latex particles with surface amino groups were prepared by a two-step emulsion polymerization. In the first step, the seeds were synthesized by batch emulsion polymerization of styrene; and in the second step, two different amino-functionalized monomers [aminoethylmethacrylate hydrochloride (AEMH) and vinylbenzylamine hydrochloride (VBAH)], two different initiator systems (K2S2O8 and K2S2O8/Na2S2O5) and mixtures of emulsifiers sodium dodecylsulfate (SDS) and Tween 21 were used to synthesize the final latexes. To characterize the final latexes, conversions were obtained gravimetrically and particle size distributions and average particle diameters were determined by transmission electron microscopy (TEM) and photon correlation spectroscopy (PCS). The amount of amino groups was determined by the SPDP (N-succinimidyl 3-(2-pyridyldithio)propionate) method. The influence of the different conditions used to synthesize the latexes on the colloidal stability of the particles was evaluated by measuring the diameters of the final latexes dispersed in solutions at different pHs and ionic strengths. The most stable latexes were obtained using the smallest seed, VBAH monomer, and the K2S2O8/Na2S2O5 initiator system. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 4230–4237, 2000
Primary amine-functionalized mesoporous phenolic resin as an effective and stable solid base catalyst for Knoevenagel reactions in water (2020)

A primary amine functionalized ordered mesoporous phenolic resin (NH2-MPR) was obtained by an evaporation-induced self-assembly method. The as-prepared NH2-MPR material possessed large surface area and ordered two-dimensional hexagonal mesoporous structure. Also, the amine groups were well-dispersed in the mesoporous channels. It can act as an efficient solid base to promote Knoevenagel condensation of various aldehydes with ethyl cyanoacetate in water with high conversion and selectivity. This excellent performance was attributed ordered mesopores and hydrophobic pore surface, which resulted in the decreased the interference of water solvent and the increased active sites accessibility. Noted that it was comparable with homogenous base catalysts in the water-medium Knoevenagel condensation reaction, and it can be reused for at least five times without significant reduction in the catalytic efficiency.
Age‐related variations in the microstructure of human tibial cancellous bone (2002)

A thorough understanding of the microstructure of cancellous bone is crucial for diagnosis, prophylaxis, and treatment of age-related skeletal diseases. Until now, little has been known about age-related variations in the microstructure of peripheral cancellous bone. This study quantified age-related changes in the three-dimensional (3D) microstructure of human tibial cancellous bone. One hundred and sixty cylindrical cancellous bone specimens were produced from 40 normal proximal tibiae from 40 donors, aged 16-85 years. These specimens were micro-computed tomography (micro-CT) scanned, and microstructural properties were determined. The specimens were then tested in compression to obtain Young's modulus. The degree of anisotropy, mean marrow space volume, and bone surface-to-volume ratio increased significantly with age. Bone volume fraction, mean trabecular volume, and bone surface density decreased significantly with age. Connectivity did not have a general relationship with age. Bone volume fraction together with anisotropy best predicted Young's modulus. Age-related changes in the microstructural properties had the same trends for both medial and lateral condyles of the tibia. The observed increase of anisotropy and constant connectivity suggest a bone remodeling mechanism that may reorient trabecular volume orientation in aging tibial cancellous bone. The aging trabeculae align more strongly to the primary direction--parallel to the tibial longitudinal loading axis.
Rapid spread of a symbiotic virus in a major crop pest following wide-scale adoption of Bt-cotton in China (2021)

Abstract Bacillus thuringiensis (Bt) crops have been widely planted and the effects of Bt-crops on populations of the target and non-target insect pests were well studied. However, the effects of Bt-crops exposure on microorganisms that interact with crop pests haven’t previously been quantified. Here, we use laboratory and field data to show that infection of Helicoverpa armigera with a symbiotic densovirus (HaDV2) is associated with its enhanced growth and resistance to Bt-cotton. Moreover, field monitoring showed a much higher incidence of cotton bollworm infection with HaDV2 in regions cultivated with Bt-cotton than in regions without it, with the rate of densovirus infection increasing with increasing use of Bt-cotton. RNA-seq suggested resistance to both baculovirus and Cry1Ac were enhanced via the immune-related pathways. These suggest that the exposure to Bt-crops has selected for beneficial interactions between the target pest and a symbiotic microorganism that enhances its performance on Bt-crops under field conditions.
TULSN: Siamese Network for Trajectory-user Linking (2020)

Trajectory-user linking (TUL), whereby a trajectory is linked to its owner in location-based social networks, is a fundamental and critical task in spatio-temporal data mining. It plays a key role in personalized recommendation, anomaly detection, and semantic trajectory mining. Existing methods for TUL are either rule-based methods, which link trajectories and users based on conventional trajectory similarities, or learning-based methods, which learn a classification model to map trajectories to their owners. However, rule-based methods ignore the semantic information in the trajectory sequence, and learning-based methods require retraining the model each time a new user is added. In this paper, we propose a Siamese network-based model for trajectory-user linking (TULSN), which uses a Siamese network to capture semantic information in the trajectory, and instead of retraining the model, it requires only a few labeled trajectories per user to identify the user category of the trajectory. The experimental results show that the TULSN outperforms existing baselines and state-of-the-art methods on real-world datasets.