gebhart/patrepeval huggingface dataset:
Cloning and Characterization of the Guinea Pig Eosinophil Eotaxin Receptor, C-C Chemokine Receptor-3: Blockade Using a Monoclonal Antibody In Vivo (1998)

Certain C-C chemokines, signaling via the eotaxin receptor C-C chemokine receptor-3 (CCR3), are thought to be central mediators of eosinophil accumulation in allergic inflammation. To investigate the role of CCR3 in vivo, we cloned the guinea pig eotaxin receptor (guinea pig CCR3) from a genomic DNA library. We isolated a single-exon open reading frame coding for a 358-amino acid chemokine receptor protein with 67 and 69% homology to human and murine CCR3, respectively. When expressed in stable transfectants, this receptor bound 125I-labeled guinea pig eotaxin, 125I-labeled human monocyte chemotactic protein-3, and 125I-labeled human RANTES. In chemotaxis assays, guinea pig CCR3 transfectants responded only to guinea pig eotaxin, with a maximal effect at 100 nM. mAbs were raised that bound selectively to both guinea pig CCR3 transfectants and guinea pig eosinophils. One of these mAbs, 2A8, blocked both ligand binding to transfectants and their chemotaxis in response to eotaxin. The Ab also inhibited chemotaxis and the elevation of cytosolic calcium in guinea pig eosinophils in response to eotaxin. F(ab')2 fragments of 2A8 were prepared that retained the ability to inhibit eosinophil calcium responses to eotaxin. Pretreatment of (111)In-labeled eosinophils in vitro with F(ab')2 2A8 selectively inhibited their accumulation in response to eotaxin in vivo. These data demonstrate that functional blockade of eosinophil chemokine receptors can be achieved in vivo and provide further support for the development of novel anti-inflammatory drugs targeting eosinophil recruitment through chemokine receptor antagonism.
AMG 102, A Fully Human Anti-Hepatocyte Growth Factor/Scatter Factor Neutralizing Antibody, Enhances the Efficacy of Temozolomide or Docetaxel in U-87 MG Cells and Xenografts (2007)

Abstract Purpose: Hepatocyte growth factor (HGF/SF) and its receptor c-Met have previously been shown to be up-regulated in multiple human cancers, including glioblastoma multiforme. To better understand if AMG 102, a fully human, anti-HGF/SF–neutralizing antibody, could be incorporated into current clinical practice, AMG 102 was tested preclinically in combination with temozolomide or docetaxel to determine if enhanced efficacy was observed compared with AMG 102 alone. Experimental Design: The effects of AMG 102 were tested for antiproliferative activity in combination with temozolomide or docetaxel on U-87 MG cells in vitro and for antitumor activity in a U-87 MG xenograft model in vivo. Apoptotic activity was also measured for AMG 102 and docetaxel combined in vitro. Results: Treatment with temozolomide combined with AMG 102 resulted in increased inhibition of cell growth in vitro compared with treatment with either single agent alone. In U-87 MG xenografts in vivo, AMG 102 combined with temozolomide or docetaxel significantly increased the inhibitory effect on tumor growth when compared with treatment with either agent alone (P &amp;lt; 0.0001 and P &amp;lt; 0.015, respectively). In vitro, docetaxel alone induced both caspase-3/7 activity as well as poly(ADP)ribose polymerase and caspase-7 cleavage in U-87 MG cells; these events were enhanced when used in combination with AMG 102. Importantly, there was no evidence of interference between AMG 102 and either temozolomide or docetaxel in vitro or in vivo. Conclusion: These studies support testing of AMG 102 in combination with temozolomide or docetaxel. Such combinations may represent promising, novel clinical therapeutic strategies for cancers that are dependent on the HGF/SF/SF:c-Met pathway in the oncology setting.
Catch-up Growth in Prepubertal Children Treated for Juvenile Hypothyroidism and Growth Hormone Deficiency can be Modelled with a Monomolecular Function (2020)

Modelling CUG of prepubertal children with JHT and GHD can be used for assessing the adequacy of CUG and the influence of clinical treatment modalities on its speed and magnitude.
Protein C Levels in Infancy and Early Childhood (1987)

Protein C antigen levels were measured in the plasma of healthy full term infants by electroimmunoassay. During the first three months of life (on day four, at one month, two months and three months of age) protein C antigen levels were compared in breast-fed and bottle-fed infants. None of the two groups of infants received vitamin K at birth. Only at the age of three months there was a significant difference between the groups. Unexpectedly infants, who were breast-fed, had a higher protein C level at three months of age. Levels were also measured in 15 healthy children between one and three years of age. The antigen levels increase with age to reach adult values at about three years of age.
Geiger-mode Avalanche Photodiode Focal Plane Arrays for 3D LIDAR Imaging (2011)

We describe FPAs based on planar-geometry Geiger-mode avalanche photodiodes designed for single-photon 3D LIDAR imaging systems. We compare new 32×128×50µm format FPAs with 32×32×100µm FPAs for dark count rate, crosstalk performance, and overall pixel yield.
Adsorption of Hydrocarbons on Mesoporous SBA-15 and PHTS Materials (2005)

Plugged hexagonal templated silica (PHTS) materials are synthesized using a high TEOS/EO(20)PO(70)EO(20) ratio in the SBA-15 synthesis. This generates internal microporous nanocapsules or plugs in part of the channels, which could be inferred from the two-step desorption branch. These materials exhibit a tunable amount of open and plugged pores and a very high micropore volume (up to 0.24 mL/g) and are more stable than the conventional micellar templated structures known so far. In this study the adsorption properties of PHTS are investigated and compared to those of its plug-free analogue SBA-15. For this purpose nitrogen, n-hexane, n-heptane, c-hexane, 3-methylpentane, 1-hexene, and water were adsorbed on SBA-15 and PHTSs with a different ratio of open and plugged mesopores. The adsorption of n-hexane, c-hexane, n-heptane, and 3-methylpentane on SBA-15 and PHTS-A demonstrated that the presence of the plugs had an effect on the uptake of adsorbate in the low relative pressure region, the position of the capillary condensation step, and the total adsorbed amount of adsorbate. The results showed that n-heptane and 3-methylpentane cannot access part of the micropore system of SBA-15 and PHTS-A. Adsorption of c-hexane and n-hexane on PHTS-A indicated that not only the kinetic diameter but also the shape of the molecule is an important factor for being able to be adsorbed into the micropores or past the plugs. Moreover, these two adsorbates were the most efficient in filling up the available pore volume. From the adsorption of n-hexane on PHTSs with a different ratio of open and plugged pores, it was concluded that the size of the plugs differed, which depends on the synthesis conditions. Water adsorption isotherms proved SBA-15 and PHTS-B to be more hydrophobic than PHTS-A. n-Hexane, 1-hexene, and toluene were adsorbed on SBA-15 and the PHTSs to investigate the influence of the polarity of the adsorbate. The isotherms showed higher uptakes for polar adsorbates on more hydrophobic materials and vice versa.
Induction of transforming growth factor‐β1 by basic fibroblast growth factor in rat C6 glioma cells and astrocytes is mediated by MEK/ERK signaling and AP‐1 activation (2007)

Basic fibroblast growth factor (bFGF) and transforming growth factor-beta1 (TGF-beta1) play an important role in proliferation, differentiation, and survival of malignant gliomas and in normal glial cell biology. Because of these critical roles, potential interactions between these key growth factors were investigated. We previously demonstrated that bFGF potently stimulates TGF-beta1 release from rat glioma cells. The purpose of the present study was to elucidate the mechanism(s) of this regulatory effect, establish its functional importance, and examine whether it extends to nontransformed rat hypothalamic astrocytes (RHA). The results revealed that RHA express the high-affinity FGF(1-4) receptors, and similarly to glioma cells, bFGF stimulated TGF-beta1 release in an isoform-specific manner. A mediatory role for ERK signaling in bFGF-induced TGF-beta release was suggested by the fact that MEK1 inhibition prevented this effect. Additionally, bFGF enhanced MEK1/2 phosphorylation and ERK activation/nuclear translocation, which culminated in increased activity of AP-1-mediated gene transcription. bFGF markedly induced TGF-beta1 mRNA levels in an isoform-specific manner, an effect that was dependent on MEK/ERK/AP-1 signaling. Functionally, bFGF-induced proliferation of glioma cells was attenuated by MEK/ERK inhibition or immunoneutralization of TGF-beta1, suggesting that this pathway may have important implications for brain tumor progression.
Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure. (1992)

Changes in chromatin structure have frequently been correlated with changes in transcription. However, the cause-and-effect relationship between chromatin structure and transcription has been hard to determine. In addition, identifying the proteins that regulate chromatin structure has been difficult. Recent evidence suggests that a functionally related set of yeast transcriptional activators (SNF2/SWI2, SNF5, SNF6, SWI1, and SWI3), required for transcription of a diverse set of genes, may affect chromatin structure. We now present genetic and molecular evidence that at least two of these transcriptional activators, SNF2/SWI2 and SNF5, function by antagonizing repression mediated by nucleosomes. First, the transcriptional defects in strains lacking these SNF genes are suppressed by a deletion of one of the two sets of genes encoding histones H2A and H2B, (hta1-htb1) delta. Second, at one affected promoter (SUC2), chromatin structure is altered in snf2/swi2 and snf5 mutants, and this chromatin defect is suppressed by (hta1-htb1) delta. Finally, analysis of chromatin structure at a mutant SUC2 promoter, in which the TATA box has been destroyed, demonstrates that the differences in SUC2 chromatin structure between SNF5+ and snf5 mutant strains are not simply an effect of different levels of SUC2 transcription. Thus, these results strongly suggest that SNF2/SWI2 and SNF5 cause changes in chromatin structure and that these changes allow transcriptional activation.
The sensitivity of single objective optimization algorithm control parameter values under different computational constraints (2011)

When solving a single objective optimization problem, a user desires an accurate solution, but may be computationally constrained in terms of the number of objective function evaluations (OFEs) that can be afforded. The OFE budget is application specific, varying depending on the time, computing resources, and the nature of the optimization problem. Control parameter value sensitivity to this OFE budget constraint is investigated for the particle swarm- and differential evolution optimization algorithms. The algorithms are tuned to selected testing problems under different OFE budget constraints, and then their performance is assessed at different OFE budgets from what they were tuned for. The results give evidence that combinations of optimization algorithm control parameter values which perform well for high OFE budgets do not perform well for low OFE budgets and vice versa. This indicates that when selecting control parameter values for these two algorithms, not only should the optimization problem characteristics be taken into account, but also the computational constraints.
A new acid fromcalea urticaefolia seed oil:trans‐3,cis‐9,cis‐12‐octadecatrienoic acid (1965)

Abstract A major constituent fatty acid (31.2%) from Calea urticaefolia (Mill.) DC. seed oil is the previously unknown trans ‐3, cis ‐9, cis ‐12‐octadecatrienoic acid. The oil also contains 2.2% of an unidentified acid and others with gas‐liquid chromatographic characteristics that correspond to the conventional fatty acids: myristic, 0.1%; palmitic, 9.3%; stearic, 2.9%; oleic, 5.3%; and linoleic, 48.9%.
Imagery and the Teaching of Singing (1996)

Abstract This chapter focuses on the role of imagery in the teaching of singing. Technical imagery is mostly of value if it is associated with already established, repeatable functional freedom. After the singer has learned to coordinate breath management and proper laryngeal and resonatory responses, an image may be useful in unifying those functions. The superimposition of imagery on the student beforehand may bring more confusion than assistance. Imagery should not be part of the first steps in teaching the technical coordination of the singing instrument. Singing, with its initially complex elements of vocal timbres, text, and the whole ambiance of performance, is highly personal. The singer will very quickly develop personal, functional imagery. Attempting to superimpose one's own physical imaging on another person is generally less than successful. Especially in the early phases of voice teaching, technical imaging should be used with caution.
Dynamics of Semidilute Polyelectrolyte Solutions (1994)

We apply dynamic scaling to both unentangled and entangled semidilute polyelectrolyte solutions. The unentangled semidilute regime can span three to four decades of polymer concentration in low-salt solutions. In this range we predict such phenomena as a concentration independent self-diffusion coefficient, relaxation time that is a decreasing function of concentration $c$, and explain the empirical Fuoss law for the viscosity $\ensuremath{\eta}\ensuremath{\sim}{c}^{\frac{1}{2}}$. In the low-salt entangled regime we predict the concentration independent relaxation time and the viscosity $\ensuremath{\eta}\ensuremath{\sim}{c}^{\frac{3}{2}}$ that are observed experimentally.
Fluorescence In Situ Hybridization (FISH) Using a Subtelomeric 11q Probe as a New Diagnostic Tool for Congenital Thrombocytopenia Caused by Deletions in 11q. (2004)

Abstract Neonatal thrombocytopenia occurs in about 1% of all newborns. Inherited forms like 11q- or Jacobsen syndrome are rare. However, they may remain undetected with karyotyping because the deleted regions in 11q often involve small subtelomeric regions. Here we report on the detection of deletions in 11q in two newborns with normal routine karyotypes who were shown to carry subtelomeric deletions in 11q by means of fluorescence in situ hybridization (FISH) using a subtelomeric 11q probe (Abbott, Diagnostics, Wiesbaden, Germany). Both children showed thrombocytopenia (18.000/μl and 26.000/μl, respectively) and dysmegakaryopoiesis (absence of normal megakaryocytes and presence of micromegakaryocytes) associated with facial dysmorphism, cardiac defects and psychomotoric retardation. In the second case, the mother and the grandmother also showed mild thrombocytopenia. In both patients, FISH analyses on peripheral blood and bone marrow showed the loss of the telomere-associated region of 11q distal of the MLL gene. In the first patient, the deletion of 11q resulted from an unbalanced complex rearrangement with duplication of 11p. As the source of this chromosomal aberration, a paternal pericentric inversion of chromosome 11 was identified. The partial monosomy 11q and the partial trisomy 11p in the first patient were confirmed by comparative genomic hybridization (CGH) analysis. Array/matrix CGH assisted in determining the breakpoints at 11p15.1 and 11q24.1. No structural aberrations of 11q were found in the mother of the second patient, but further investigations are under way. These findings give further evidence that small subtelomeric deletions of 11q and probably mutations of genes located therein cause thrombocytopenia. Since it can be very difficult to detect these deletions by karyotyping, FISH using a subtelomeric 11q probe seems to be an extremely useful new diagnostic tool. This new method should be applied in children with congenital thrombocytopenia, in particular if they have additional complex dysmorphic features.
Novel Single Photon Emitters Based on Color Centers in Diamond (2011)

Single photon emitters are core components of quantum technologies. In this work new family of emitters based on chromium impurities in diamond is presented. The emitters can be fabricated by ion implantation of chromium into bulk diamond or incorporated during the growth of diamond nanocrystals. The remarkable photo‐physical properties of these emitters include room temperature operation, narrow photoluminescence (PL) in the near infra red and ultra bright, fully polarized photon emission with count rate of 3.2×106 counts/s. These photo physical properties make the Cr centers ideal for quantum information processing, metrology, and cellular bio markers applications.
ROLE OF CHRONIC INFLAMMATION IN THE PROMOTION OF PROSTATIC HYPERPLASIA IN RATS (1998)

Immunoinflammatory stimulators might play a role in the prostatic epithelial cell growth and proliferation processes, most probably by modulation of the cytokine system.
Bildung tricyclischer Thietan‐Derivate durch intramolekulare(2+2)‐Cycloaddition (1987)

Formation of Thietane Derivatives via Intramolecular (2+2) Cycloaddition On irradiation, the two 4‐vinyl‐1,3‐thiazole‐5(4 H )‐thiones 1a, b , synthesized from thiobenzoic acid and the corresponding 3‐amino‐2 H ‐azirines 2a , b , undergo an intramolecular (2+2)‐cycloaddition reaction of the CS and CC bonds to give the tricyclic thietane derivatives 3a , b .
Cancer cell-expressed SLAMF7 is not required for CD47-mediated phagocytosis (2019)

CD47 is a prominent new target in cancer immunotherapy, with antagonistic antibodies currently being evaluated in clinical trials. For effective evaluation of this strategy it is crucial to identify which patients are suited for CD47-targeted therapy. In this respect, expression of the pro-phagocytic signal SLAMF7 on both macrophages and cancer cells was recently reported to be a requisite for CD47 antibody-mediated phagocytosis. Here, we demonstrate that in fact SLAMF7 expression on cancer cells is not required and does not impact on CD47 antibody therapy. Moreover, SLAMF7 also does not impact on phagocytosis induction by CD20 antibody rituximab nor associates with overall survival of Diffuse Large B-Cell Lymphoma patients. In contrast, expression of CD47 negatively impacts on overall and progression free survival. In conclusion, cancer cell expression of SLAMF7 is not required for phagocytosis and, in contrast to CD47 expression, should not be used as selection criterion for CD47-targeted therapy.
Depth dependent modification of optical constants arising from H+ implantation in n-type 4H-SiC measured using coherent acoustic phonons (2016)

Silicon carbide (SiC) is a promising material for new generation electronics including high power/high temperature devices and advanced optical applications such as room temperature spintronics and quantum computing. Both types of applications require the control of defects particularly those created by ion bombardment. In this work, modification of optical constants of 4H-SiC due to hydrogen implantation at 180 keV and at fluences ranging from 1014 to 1016 cm−2 is reported. The depth dependence of the modified optical constants was extracted from coherent acoustic phonon spectra. Implanted spectra show a strong dependence of the 4H-SiC complex refractive index depth profile on H+ fluence. These studies provide basic insight into the dependence of optical properties of 4H silicon carbide on defect densities created by ion implantation, which is of relevance to the fabrication of SiC-based photonic and optoelectronic devices.
Industrial Yogurt Manufacture: Monitoring of Fermentation Process and Improvement of Final Product Quality (2007)

Lactic acid fermentation during the production of skim milk and whole fat set-style yogurt was continuously monitored by measuring pH. The modified Gompertz model was successfully applied to describe the pH decline and viscosity development during the fermentation process. The viscosity and incubation time data were also fitted to linear models against ln(pH). The investigation of the yogurt quality improvement practices included 2 different heat treatments (80 degrees C for 30 min and 95 degrees C for 10 min), 3 milk protein fortifying agents (skim milk powder, whey powder, and milk protein concentrate) added at 2.0%, and 4 hydrocolloids (kappa-carrageenan, xanthan, guar gum, and pectin) added at 0.01% to whole fat and skim yogurts. Heat treatment significantly affected viscosity and acetaldehyde development without influencing incubation time and acidity. The addition of whey powder shortened the incubation time but had a detrimental effect on consistency, firmness, and overall acceptance of yogurts. On the other hand, addition of skim milk powder improved the textural quality and decreased the vulnerability of yogurts to syneresis. Anionic stabilizers (kappa-carrageenan and pectin) had a poor effect on the texture and palatability of yogurts. However, neutral gums (xanthan and guar gum) improved texture and prevented the wheying-off defect. Skim milk yogurts exhibited longer incubation times and higher viscosities, whereas they were rated higher during sensory evaluation than whole fat yogurts.
ChemInform Abstract: Advanced in situ Spectroscopic Techniques and Their Applications in Environmental Biogeochemistry: Introduction to the Special Section (2011)

Abstract Review: 96 refs.
Mycobacterium tuberculosisSigM Positively Regulates Esx Secreted Protein and Nonribosomal Peptide Synthetase Genes and Down Regulates Virulence-Associated Surface Lipid Synthesis (2006)

The Mycobacterium tuberculosis genome encodes 12 alternative sigma factors, several of which regulate stress responses and are required for virulence in animal models of acute infection. In this work we investigated M. tuberculosis SigM, a member of the extracytoplasmic function subfamily of alternative sigma factors. This sigma factor is expressed at low levels in vitro and does not appear to function in stress response regulation. Instead, SigM positively regulates genes required for the synthesis of surface or secreted molecules. Among these are genes encoding two pairs of Esx secreted proteins, a multisubunit nonribosomal peptide synthetase operon, and genes encoding two members of the proline-proline-glutamate (PPE) family of proteins. Genes up regulated in a sigM mutant strain include a different PPE gene, as well as several genes involved in surface lipid synthesis. Among these are genes involved in synthesis of phthiocerol dimycocerosate (PDIM), a surface lipid critical for virulence during acute infection, and the kasA-kasB operon, which is required for mycolic acid synthesis. Analysis of surface lipids showed that PDIM synthesis is increased in a sigM-disrupted strain and is undetectable in a sigM overexpression strain. These findings demonstrate that SigM positively and negatively regulates cell surface and secreted molecules that are likely to function in host-pathogen interactions.