gebhart/patrepeval huggingface dataset:
Quantification of dominant diffusion processes through plasma enhanced chemical vapor deposition-coated plastics by combining two complementary methods for porosity analysis (2020)

Abstract Thin plasma polymerized gas barrier coatings were applied on PET films using low-pressure microwave excited hexamethyldisiloxane plasma. Oxygen and water vapor transmission rates were determined for the same barrier coating of varying thickness and correlated with the coating porosity. The porosity was quantified on different scales with two complementary methods. A plasma etching process with subsequent high-resolution SEM imaging and an automated defect detection as well as an overall porosity measurement by means of cyclic voltammetry. This method combination can be used to assign and classify Knudsen diffusion and Knudsen diffusion for different coatings and defect distributions applied. Film growing process could be observed with correlating defect distributions and it could be determined that almost no macro defects with a radius r d &gt; 150 nm are present while growing process. With visually closed coatings, the entire oxygen and water vapor permeation could be attributed to Knudsen and solid body diffusion, although it is difficult to divide the proportions of these two processes.
HNK-1 sulfotransferase-dependent sulfation regulating laminin-binding glycans occurs in the post-phosphoryl moiety on α-dystroglycan (2013)

Dystroglycan (DG) is a cell surface glycoprotein that connects extracellular matrix molecules to the intracellular cytoskeleton, functioning as mechanical and signaling axes in various physiological events. Since the ligand-binding activity of DG strictly depends on O-mannosyl glycans attached to its extracellular α-DG subunit, aberrant glycosylation causes dystroglycanopathy, a subclass of congenital muscular dystrophy. Accumulating evidence shows that like-acetylglucosaminyltransferase (LARGE), a glycosyltransferase involved in the biosynthesis of a phosphodiester-linked modification on O-mannose, is essential for α-DG to gain the ligand-binding activity. We previously reported that human natural killer-1 sulfotransferase (HNK-1ST), which was originally reported as one of the enzymes responsible for HNK-1 glycoepitope, had an ability to suppress the glycosylation and the function of α-DG. In this study, we investigated how HNK-1ST regulates the glycosylation of α-DG using deletion and mutation analyses. We generated an α-DG mutant which has only one threonine residue capable of being modified by LARGE. Focusing on the single post-phosphoryl modification site, we found that HNK-1ST showed an almost complete inhibition of the LARGE-dependent modification and transferred a sulfate group to the phosphodiester-linked moiety on O-mannose. Furthermore, using an in vitro enzymatic assay system, we demonstrated that the sulfated α-DG by HNK-1ST is no longer glycosylated by LARGE. These results illustrate one possible glycosylation pathway where α-DG function is regulated by opposing actions of HNK-1ST and LARGE.
Understanding the New World Order of Private Equity (2010)

The Federal Reserve System?s Private Equity Merchant Banking Knowledge Center, formed at the Chicago Fed in 2000 after the passage of the Gramm?Leach?Bliley Act, sponsors an annual conference on new industry developments. This article summarizes the tenth annual conference, The New World Order of Private Equity, held on July 21?22, 2010.
Abstract 4455: Discovery of AMG 510, a first-in-human covalent inhibitor of KRASG12C for the treatment of solid tumors (2019)

Abstract The RAS gene family encodes the small GTPase proteins NRAS, HRAS, and KRAS, which play an essential role in cellular growth and proliferation. KRAS is one of the most frequently mutated oncogenes in human cancer, with KRAS p.G12D, p.G12V, and p.G12C constituting the major mutational subtypes across lung, colon, and pancreatic cancers. Despite more than three decades of research, indirect approaches targeting KRAS mutant cancers have largely failed to show clinical benefit, and direct approaches have been stymied by the apparently ‘undruggable’ nature of KRAS. Cysteine-12 of KRASG12C has recently emerged as a unique vulnerability in KRAS-mutant cancers, and a small number of cysteine-reactive inhibitory tool molecules have been disclosed. We here report independent efforts to identify cysteine-reactive molecules capable of selectively inhibiting KRASG12C. Through iterative screening and structural biology efforts, we identified a novel Cys12-reactive inhibitor scaffold that derived its potency from occupancy of a previously unknown cryptic pocket induced by side-chain motion of the His95 residue of KRAS. Employing a scaffold-hopping approach, we leveraged knowledge of this cryptic pocket to design a series of N-aryl quinazolin-2(1H)-one-based inhibitors that demonstrated significantly enhanced potency relative to prior tool compounds. Extensive optimization of these leads led to the identification of a highly potent, selective, and well-tolerated inhibitor of KRASG12C, which was nominated for clinical development as AMG 510. In preclinical tumor models, AMG 510 rapidly and irreversibly binds to KRASG12C, providing durable suppression of the mitogen-activated protein kinase (MAPK) signaling pathway. Dosed orally (once daily) as a single agent, AMG 510 is capable of inducing tumor regression in mouse models of KRASG12C cancer. AMG 510 is, to the best of our knowledge, the first direct KRASG12C therapeutic to reach human clinical testing and is currently in a Phase I clinical trial evaluating safety, tolerability, PK, and efficacy in subjects with solid tumors bearing the KRAS p.G12C mutation (NCT03600883). Citation Format: Brian A. Lanman, Jian Jeffrey Chen, Longbin Liu, Patricia Lopez, Alexander J. Pickrell, Anthony B. Reed, Hui-Ling Wang, Pragathi Achanta, Jude Canon, Daniel A. Erlanson, Raymond V. Fucini, Joon Won Jeong, Christopher Mohr, Anne Y. Saiki, Victor J. Cee, J. Russell Lipford, Karen Rex, Laurie P. Volak. Discovery of AMG 510, a first-in-human covalent inhibitor of KRASG12C for the treatment of solid tumors [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 4455.
Cyclometalated and Alkoxyphenyl-Substituted Palladium Imidazolin-2-ylidene Complexes. Synthetic, Structural, and Catalytic Studies (2007)

Some new N,N‘-bis(aryl)imidazolinium salts (3a−h), in which the N-aryl groups have one unsubstituted ortho position and alkyl (Me, Pri) or alkoxy (OMe, OPri) substitution at the other ortho and/or para positions, have been prepared. They were used for the synthesis of N-heterocyclic carbene complexes of palladium in which the N-heterocyclic carbene is attached to cyclometalated or electron-rich aromatic rings (4, 5, 11d,e). The reaction of Pd(tmed)(CH3)2 with the N-heterocyclic carbene generated from 3b and base gave the dimethyl complex 6, which quantitatively eliminated ethane to form the Pd(0) complex 7. The latter was converted to a new type of “pincer” complex (8) by facile cyclometalation of both aromatic groups of the N-heterocyclic carbene ligand. The activities of the new complexes 4 and 9d,e in the Heck reaction of aryl halides were compared. At higher temperatures the complexes 9d,e show low activity in the coupling of aryl chlorides.
Teleradiologie: Einsatz eines Multimedia-PC für den Zugriff auf elektronische Patientenakten und Telekonsultationen (1996)

A PC-platform is presented using internet technology on Ethernet (local) or ISDN (external) for access to digital hospital infrastructures comprising electronic multimedia patient records integrating information systems of all clinical departments. In addition, a videoconferencing system is implemented for teleconsulting, and a document camera allows transmission of analogue data. In combination with the multimedia-PC. Ethernet as well as ISDN offer satisfying performance for transmission of medical data including images. In 20 cases, visualisation of the electronic patient record, an average CT with report and 58 GIFF Images', or transfer of an ACR-NEMA file from CT, took seconds (Ethernet) or up to 3.5 minutes (ISDN - 58 CT images and report).
Characterization of a cloned human dihydrotestosterone/androstanediol UDP-glucuronosyltransferase and its comparison to other steroid isoforms (1993)

A human cDNA, UDPGTh-3, encoding a dihydrotestosterone/5 alpha-androstane-3 alpha,17 beta-diol UDP- glucuronosyltransferase (transferase) has been isolated and characterized. The nucleotide sequence of UDPGTh-3 encodes a 530 amino acid protein with a typical membrane insertion-signal peptide, a membrane-anchoring domain, and three potential asparagine-linked glycosylation sites. Alignment shows that this encoded isozyme is 96% identical to an apparent estriol-metabolizing isoform, HLUG4 [Coffman, B. L., et al., (1990) Arch. Biochem. Biophys. 281, 170-175]. The udpgth-3 isozyme is 78% identical to two other steroid isoforms, HLUG25 (udpgth-1) [Jackson, M. R., et al. (1987) Biochem. J. 242, 581-588; Ritter, J. K., et. al. (1992) Biochemistry 31, 3409-3414] and udpgth-2 [Ritter, J. K., et al. (1990) J. Biol. Chem. 265, 7900-7906]. udpgth-2 and udpgth-1 metabolized parallel substrates (stereospecific estriols, 3,4-catechol estrogens, and the bile salt hyodeoxycholate), except that udpgth-2 was 100-fold more effective than udpgth-1. The mRNA encoding udpgth-3 is 2.4 kb in size and is present in liver, prostate, and testis; the mRNA encoding udpgth-2 is located in liver and kidney, whereas that for udpgth-1 is liver-specific. Each of the liver mRNA species encoding udpgth-3, udpgth-2, or udpgth-1 was induced 2.5-3-fold by phenobarbital treatment of the Erythrocebus patas monkey. In 16 human liver mRNA samples, the message encoding udpgth-3 was generally uniformly expressed and that for udpgth-1 exhibited wide variations in its level, whereas that for udpgth-2 was barely detectable in nine samples and not detectable in the others. Three samples contained no message for either isoform. Substrate turnover by udpgth-3 is ranked as follows: phenolphthalein > 5 alpha-androstane-3 alpha,17 beta-diol > 5 alpha- dihydrotestosterone = 4-hydroxybiphenyl > phenolsulfonphthalein (phenol red) > phenolphthalin. Genes encoding udpgth-3, udpgth-2, and udpgth-1 mapped to human chromosome 4 with genomic DNA from human/mouse and human/hamster somatic cell hybrids; the genes encoding udpgth-1 and udpgth-2 mapped specifically to band 4q28. udpgth-3 exhibited similar Km values both for 5 alpha-dihydrotestosterone (10 microM) and for its metabolite, 5 alpha-androstane-3 alpha,-17 beta-diol (12.5 microM).(ABSTRACT TRUNCATED AT 400 WORDS)
Estimation of myocardium deformation by simultaneous use of tagged and untagged gated cardiac MRI (2009)

In this manuscript we describe a method to estimate myocardium deformation that simultaneously uses both tagged and untagged cardiac-gated MRI image sequences. We show that this approach is more accurate and robust than traditional methods that usually use only tagged cardiac-gated MRI data. Estimation of the deformation field is based on a deformable mesh model (DMM) that incorporates a myocardium surface model. The DMM is well suited for motion tracking and analysis of organs undergoing non-rigid deformation. Previously, we successfully utilized a DMM for heart motion tracking in cardiac SPECT and tagged MRI. Promising preliminary results are presented.
Osteopontin (Eta-1) and Fibroblast Growth Factor-2 Cross-Talk in Angiogenesis (2003)

The cytokine/extracellular matrix protein osteopontin (OPN/Eta-1) is an important component of cellular immunity and inflammation. It also acts as a survival, cell-adhesive, and chemotactic factor for endothelial cells. Here, subtractive suppression hybridization showed that serum-deprived murine aortic endothelial (MAE) cells transfected with the angiogenic fibroblast growth factor-2 (FGF2) overexpress OPN compared with parental cells. This was confirmed by Northern blotting and Western blot analysis of the conditioned media in different clones of endothelial cells overexpressing FGF2 and in endothelial cells treated with the recombinant growth factor. In vivo, FGF2 caused OPN expression in newly formed endothelium of the chick embryo chorioallantoic membrane (CAM) and of murine s.c. Matrigel plug implants. Recombinant OPN (rOPN), the fusion protein GST-OPN, and the deletion mutant GST-DeltaRGD-OPN were angiogenic in the CAM assay. Angiogenesis was also triggered by OPN-transfected MAE cells grafted onto the CAM. OPN-driven neovascularization was independent from endothelial alpha(v)beta(3) integrin engagement and was always paralleled by the appearance of a massive mononuclear cell infiltrate. Accordingly, rOPN, GST-OPN, GST-DeltaRGD-OPN, and the conditioned medium of OPN-overexpressing MAE cells were chemotactic for isolated human monocytes. Also, rOPN triggered a proangiogenic phenotype in human monocytes by inducing the expression of the angiogenic cytokines TNF-alpha and IL-8. OPN-mediated recruitment of proangiogenic monocytes may represent a mechanism of amplification of FGF2-induced neovascularization during inflammation, wound healing, and tumor growth.
Laboratory studies of radionuclide distributions between selected ground waters and geologic media. Progress report, October 1--December 31, 1978 (1979)

The Los Alamos Scientific Laboratory contribution to the Waste Isolation Safety Assessment Program, Task 4, for the first quarter of FY-79 mostly involved uranium, plutonium, and americium batch sorption studies needed to extend or complete the data bases for argillite, tuff, and granite. Initial efforts have been made to develop the equipment and procedures for performing migration rate studies on crushed, consolidated, and fractured rock, and for performing measurements under controlled atmosphere conditions. Several additional analytical procedures to be utilized for chemical characterization have been developed, and several additional ethylene glycol surface area measurements have been completed.
Affinity labeling of the catalytic subunit of cyclic AMP-dependent protein kinase by N alpha-tosyl-L-lysine chloromethyl ketone. (1979)

The catalytic subunit of cyclic AMP-dependent protein kinase (from rabbit skeletal muscle; ATP:protein phosphotransferase, EC 2.7.1.37) was found to be irreversibly inactivated by chloromethyl ketone derivatives of lysine and phenylalanine, chemical reagents originally designed for labeling the active sites of the proteolytic enzymes trypsin and chymotrypsin. This inactivation was shown to occur at pH 7.5 and 22 degrees C, conditions under which chemically related alkylating reagents such as chloroacetamide and chloroacetic acid (which do not possess the amino acid side chain) fail to inactivate the enzyme. In the case of the chloromethyl ketone derivative of N alpha-tosyl-L-lysine, the enzyme could be protected by its nucleotide substrate (MgATP), by one of its protein substrates (histone H2b), and by its regulatory subunit which, upon binding, shields the active site of the catalytic subunit. Differential labeling experiments, together with kinetic studies of the rates of modification of the sulfhydryl groups in the enzyme before and after inactivation with the chloromethyl ketone, suggest that the loss of activity is associated with one (kinetically characterized) sulfhydryl group present either at the active site of the enzyme or at a site intimately associated with it. The general implications of these results regarding the interpretation of affinity labeling experiments carried out in complex mixtures of proteins or under in vivo conditions are discussed.
Susceptibility to dengue hemorrhagic fever in vietnam: evidence of an association with variation in the vitamin d receptor and Fc gamma receptor IIa genes. (2002)

Dengue is an increasingly important cause of morbidity and mortality in the tropics, with more than a billion people at risk each year. Immunologic enhancement is thought to contribute to disease pathogenesis. Only a very small proportion of infected individuals develop life-threatening dengue hemorrhagic fever (DHF). In a large case-control study with 400 DHF patients and 300 matched controls, we have assessed five polymorphic non-HLA host genetic factors that might influence susceptibility to DHF. The less frequent t allele of a variant at position 352 of the vitamin D receptor (VDR) gene was associated with resistance to severe dengue (P = 0.03). Homozygotes for the arginine variant at position 131 of the Fc gammaRIIA gene, who have less capacity to opsonize IgG2 antibodies, may also be protected from DHF (one-tailed P = 0.03). No associations were found with polymorphisms in the mannose binding lectin, interleukin-1 (IL-4), and IL-1 receptor antagonist genes. Further studies to confirm these associations are warranted.
Ursodeoxycholic acid: Effects on hepatic unfolded protein response, apoptosis and oxidative stress in morbidly obese patients (2017)

Our data suggest that UDCA treatment has ambivalent effects in NAFLD patients. While increased SAF-scores and elevated CHOP levels may be disadvantageous in the UDCA treated cohort, UDCA's cytoprotective properties potentially changed the apoptotic threshold as reflected by absent induction of pro-apoptotic triggers. UDCA treatment failed to improve the oxidative stress status in NAFLD patients.
Equalization techniques for high-density magnetic recording (1998)

The advent of digital computers spurred the development of magnetic tape and disk-drive storage systems capable of storing large amounts of digital information. Since the early development of such systems in the 1950s, we have experienced a phenomenal growth in the use of digital storage systems and an equally large increase in storage capacity and storage density. Over the past four decades, the major factor contributing to the large increases in storage density and capacity has been the continuous technological improvements in the design and development magnetic media and heads. As the storage densities increase, signal processing becomes an important tool in the reconstruction of the digital information in the readback process. We present a tutorial treatment of signal-processing techniques for combating intersymbol interference inherent in high-density digital magnetic recording systems. We focus primarily on magnetic disk systems. We observed that the optimum detector for the ISI-corrupted signal is a maximum-likelihood sequence detector (MLSD) that can be efficiently implemented by means of the Viterbi algorithm.
Numerical simulation of dynamics of brushless dc motors for aerospace and other applications. Volume 2: User's guide to computer EMA model (1979)

A description and user's guide of the computer program developed to simulate the dynamics of an electromechanical actuator for aerospace applications are presented. The effects of the stator phase currents on the permanent magnets of the rotor are examined. The voltage and current waveforms present in the power conditioner network during the motoring, regenerative braking, and plugging modes of operation are presented and discussed.
Effect of sex and age on serum biochemical reference ranges in C57BL/6J mice. (2004)

The C57BL/6J mouse strain is widely used as a common genomic background for many gene-modified murine models. However, few data on its clinical biochemistry are available. Therefore, we conducted a study to provide new protocols for serum biochemical screening and developed the reference range for a set of 13 analytes that pertain to lipoprotein metabolism, electrolyte balance, and data reflecting function of the heart, liver, kidneys, and pancreas. Male and female mice were studied, and blood samples were obtained at six and 20 weeks of age. Of 13 parameters studied, 12 were affected by age and sex. Briefly, male mice had higher triglycerides, cholesterol, high-density lipoprotein cholesterol, glucose, and amylase values. With age, mice of both sexes developed higher triglycerides and glucose concentrations, as well as aspartate and alanine transaminase activities. A significant difference between mice and humans was noted for amylase activity, which is extremely high in this healthy mouse strain. Therefore, we suggest that caution should be taken when data are interpreted to indicate gastrointestinal disease in murine models. The reference values for murine clinical biochemical analytes obtained during the study reported here should be useful for characterizing the biochemical phenotype of experimental mice.
The Deep Space Atomic Clock Mission (2012)

The Deep Space Atomic Clock (DSAC) mission will demonstrate the space flight performance of a small, low-mass, high-stability mercury-ion atomic clock with long term stability and accuracy on par with that of the Deep Space Network. The timing stability introduced by DSAC allows for a 1-Way radiometric tracking paradigm for deep space navigation, with benefits including increased tracking via utilization of the DSN's Multiple Spacecraft Per Aperture (MSPA) capability and full ground station-spacecraft view periods, more accurate radio occultation signals, decreased single-frequency measurement noise, and the possibility for fully autonomous on-board navigation. Specific examples of navigation and radio science benefits to deep space missions are highlighted through simulations of Mars orbiter and Europa flyby missions. Additionally, this paper provides an overview of the mercury-ion trap technology behind DSAC, details of and options for the upcoming 2015/2016 space demonstration, and expected on-orbit clock performance.
Harmonics Produced by Variable-speed Fan Systems (1994)

The characteristics of electric power harmonics generated by four successive designs of a 41 cm diameter, variable-speed fan system used for ventilation of agricultural buildings were investigated. Harmonic analyzers were programmed to calculate harmonic frequencies of the 2nd through the 63rd orders at several motor control voltages during tests of each fan design. Alterations to the fan system included changes to the motor, the impeller, and the controller. Motors used in this study were single-phase 0.25 kW and 0.20 kW. The 230 Vac fan motor produced greater total harmonic distortion with a triac-based controller in the circuit to reduce motor voltage when compared with no controller. The third harmonic was the greatest contributor to total harmonic distortion of current and voltage. The magnitudes of even order harmonics were negligible, and odd harmonics decreased with increasing order. Fan static pressure had relatively little effect (less than 10%) on harmonic levels. Heavier motor loading and smaller motor capacitors tended to lower the generation of harmonics from the fan system. Comparisons of harmonic generation were made between triac and transformer-based controllers. Also, voltage harmonics before and after a triac-based controller were evaluated.
Calorimetric and Computational Study of 2- and 3-Acetyl-1-methylpyrrole Isomers (2010)

This work reports the enthalpies of formation in the condensed and gas phases of 2-acetyl-1-methylpyrrole and 3-acetyl-1-methylpyrrole, derived from the standard (p(o) = 0.1 MPa) molar enthalpies of combustion, in oxygen, Delta(c)H(m)(o), measured by static bomb combustion calorimetry and the standard molar enthalpies of vaporization, Delta(l)(g)H(m)(o), at T = 298.15 K, obtained by high-temperature Calvet microcalorimetry. The theoretically estimated gas-phase enthalpies of formation were calculated from high-level ab initio molecular orbital calculations at the G3(MP2)//B3LYP level; the computed values compare very well with the experimental results obtained in this work and show that the 2-acetyl-1-methylpyrrole is thermodynamically more stable than the 3-isomer. Furthermore, this composite method was also applied in the calculation of bond dissociation enthalpies, gas-phase basicities, proton and electron affinities, and adiabatic ionization enthalpies.