gebhart/patrepeval huggingface dataset:
The Mid-South Clinical Data Research Network (2014)

The Mid-South Clinical Data Research Network (CDRN) encompasses three large health systems: (1) Vanderbilt Health System (VU) with electronic medical records for over 2 million patients, (2) the Vanderbilt Healthcare Affiliated Network (VHAN) which currently includes over 40 hospitals, hundreds of ambulatory practices, and over 3 million patients in the Mid-South, and (3) Greenway Medical Technologies, with access to 24 million patients nationally. Initial goals of the Mid-South CDRN include: (1) expansion of our VU data network to include the VHAN and Greenway systems, (2) developing data integration/interoperability across the three systems, (3) improving our current tools for extracting clinical data, (4) optimization of tools for collection of patient-reported data, and (5) expansion of clinical decision support. By 18 months, we anticipate our CDRN will robustly support projects in comparative effectiveness research, pragmatic clinical trials, and other key research areas and have the capacity to share data and health information technology tools nationally.
Correlations between antemortem hippocampal volume and postmortem neuropathology in AD subjects. (2005)

Antemortem measures of hippocampal volume have been used to distinguish subjects with and without probable Alzheimer disease (AD). However, relatively little information is available about how well such antemortem measures correlate with postmortem measures of disease in AD subjects. In this study, antemortem magnetic resonance scans were collected from 10 subjects with probable AD and 3 nondemented controls who later came to autopsy. Significant correlations were observed between antemortem hippocampal volumes and both dementia severity and the density of hippocampal neurofibrillary tangles at autopsy. Total cerebral volumes, in contrast, were significantly correlated with the density of hippocampal senile plaques. The data suggest that hippocampal volume assessed in living subjects with probable AD is both a good marker of dementia severity and of an underlying element of the AD disease process.
Thyratron replacement (2016)

Thyratrons in high-power, short-pulse accelerators have a limited lifetime, making it desirable to replace the thyratrons with solid-state devices. One possibility, thyristors, are being developed for this application; they have not, to date, demonstrated the reliability needed for installation in the short pulse, high peak power RF stations used in many pulsed electron accelerators. An alternate solid-state device, the insulated-gate bipolar transistor (IGBT), readily operates at the speed needed for accelerators, but commercial IGBTs cannot handle the voltage and current required. It is, however, possible to assemble these devices in arrays to reach the required performance levels without sacrificing their inherent speed. Diversified Technologies, Inc. (DTI) has patented and refined the technology required to build these arrays of series-parallel connected switches. Under a DOE contract, DTI is currently developing an affordable, reliable, form-fit-function replacement for the klystron modulator thyratrons at Stanford Linear Accelerator Center (SLAC).
State signal and fuzzy membership function of fault diagnosis in electrical equipment (2002)

It is an effective approach to combine state signal processing with fuzzy mathematics for recognizing fuzziness and randomness clearly. This paper shows how the fuzzy membership functions are obtained from results of signal processing of fault diagnosis in electrical equipment. Hence the properties of electrical equipment are revealed more thoroughly. Finally, this method is proved to be effective by an example.
Alternative surfaces for microcarrier culture of animal cells. (1981)

As part of an effort to broaden the applicability and efficiency of microcarrier cell culture various alternative new microcarriers were synthesized. The microcarriers were compared as substrates for the growth of several types of cells and with respect to binding of proteins from the culture medium. Cross-linked dextran has been found to be the most suitable material for a microcarrier matrix and was used as the matrix for the new microcarriers. One type of microcarrier was synthesized so that the charges necessary for cell attachment were present only in the surface layer of the microcarrier in the form of N,N,N-trimethyl-2-hydroxyaminopropyl groups. The resulting microcarriers had a very low capacity to bind proteins from the culture medium (e.g. albumin and IgG) and such proteins could be removed from the cultures more efficiently than when using previous microcarriers. A new principle was used for the development of the other type of microcarrier. A surface layer of cross-linked denatured collagen provided the surface for growth of cells. These microcarriers provided a "natural" substrate for cell growth and allowed improved attachment and spreading of cells with epithelial morphology. Harvesting cells from these microcarriers with proteolytic enzymes was more efficient than with previous microcarriers. The two alternative microcarriers should result in improved process efficiency and have a potential value in the preparation of live vaccines.
Invited paper: Prospects for metamaterials (2004)

Recent research activities on metamaterials, in particular left-handed materials, have not only demonstrated interesting physical phenomena but have also lead to the realisation of promising new types of high frequency components and devices. It is difficult but interesting to consider the prospects for these materials.
Ultrastructural studies in APP/PS1 mice expressing human ApoE isoforms: implications for Alzheimer's disease. (2012)

Alzheimer's disease is characterized in part by extracellular aggregation of the amyloid-β peptide in the form of diffuse and fibrillar plaques in the brain. Electron microscopy (EM) has made an important contribution in understanding of the structure of amyloid plaques in humans. Classical EM studies have revealed the architecture of the fibrillar core, characterized the progression of neuritic changes, and have identified the neurofibrillary tangles formed by paired helical filaments (PHF) in degenerating neurons. Clinical data has strongly correlated cognitive impairment in AD with the substantial synapse loss observed in these early ultrastructural studies. Animal models of AD-type brain amyloidosis have provided excellent opportunities to study amyloid and neuritic pathology in detail and establish the role of neurons and glia in plaque formation. Transgenic mice overexpressing mutant amyloid precursor protein (APP) alone with or without mutant presenilin 1 (PS1), have shown that brain amyloid plaque development and structure grossly recapitulate classical findings in humans. Transgenic APP/PS1 mice expressing human apolioprotein E isoforms also develop amyloid plaque deposition. However no ultrastructural data has been reported for these animals. Here we show results from detailed EM analysis of amyloid plaques in APP/PS1 mice expressing human isoforms of ApoE and compare these findings with EM data in other transgenic models and in human AD. Our results show that similar to other transgenic animals, APP/PS1 mice expressing human ApoE isoforms share all major cellular and subcellular degenerative features and highlight the identity of the cellular elements involved in Aβ deposition and neuronal degeneration.
Constitutive overexpression of cyclin D1 does not prevent inhibition of hormone-responsive human breast cancer cell growth by antiestrogens. (1998)

Cyclin D1 is a target for positive regulation by estrogens in growth-responsive cells, in which it mediates their mitogenic effects. Amplification and overexpression of the cyclin D1 gene (CCND1) might thus represent a genetic lesion inducing hormone-independent growth of transformed cells. Indeed, cyclin D1 overexpression has been found in up to 50% of primary breast cancers, and in about one-third of these cases, this is linked to amplification of the 11q13 chromosomal region, which also includes the CCND1 gene. These tumors are predominantly estrogen receptor-positive, and for this reason, these patients are often selected for adjuvant antiestrogen therapy. No information is available, however, as to whether cyclin D1 overexpression due to gene amplification might interfere with and reduce antiestrogen efficacy. This was investigated here by taking advantage of an experimental model that reproduces cyclin D1 overexpression resulting from increased CCND1 gene dosage in hormone-responsive human breast cancer cells. For this, MCF-7 cells stably transfected with a tet-inducible cyclin D1 expression vector were tested for their in vitro response to steroidal (ICI 182,780) and nonsteroidal (trans-4-hydroxytamoxifen) antiestrogens under condition of low (endogenous only) or high (exogenous) cyclin D1 levels. Results show that although cyclin D1 overexpression seems to interfere with the early cell cycle effects of antiestrogens, it does not prevent their cytostatic actions, so that growth of cyclin-overexpressing MCF-7 cells is still efficiently inhibited in vitro by these drugs.
Preliminary integrated economic and environmental analysis of polyhydroxyalkanoates (PHAs) biosynthesis (2016)

Being biodegradable and renewable, polyhydroxyalkanoates (PHAs), a green polymer, attract much attentions as potential alternative for conventional plastics due to increased concern towards environmental issue and resource depletion. However, PHAs not only have suffered some economic disadvantages on the market, and its environmental-friendliness has also been questioned as well. Therefore, there is a growing demand to improve both economic and environmental performances of PHAs production, especially at earlier stage of the process where there are plenty of opportunities and the modification cost is cheap. Therefore, a preliminary integrated assessment is introduced to provide a rapid evaluation for PHAs biosynthesis at R&D stage by coupling material cost analysis together with life-cycle assessment. Using fuzzy approach multi-objective optimization, crude glycerol is the most optimum substrate for biopolymer productions from Cupriavidus necator. The insight from sensitivity analysis has showed that the integrated assessment is sensitive to fluctuation in price and yield of substrate, while maintaining its robustness as similar result is obtained when using different multi-objective optimization tools. Providing some novel insights on PHAs biosynthesis like performance and site selection influencing factor, the integrated assessment can be used to facilitate screening for large-scale production of PHAs.
Analysis of wave modes in slab waveguide with truncated parabolic index (1974)

The exact wave equation for a lenslike dielectric medium derived from Maxwell's equations contains the term of gradient of permittivity ε. The purpose of this correspondence is to clarify the effect of the <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">\bigtriangledown \epsilon</tex> term on the propagation constants of the modes. We find that the propagation constants of the lower order modes suffer significant modification by taking the <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">\bigtriangledown \epsilon</tex> term into account, while for the higher order modes the effects are small enough to be disregarded.
A low-complexity echo canceller performing the channel phase acquisition (1986)

An algorithm with low complexity (multiplication free) is presented for the purpose of echo cancellation at a data rate of up to 4800 bit/s. It is derived from the sign algorithm, and takes into account only the component of the error that is not corrupted by the far-end data signal.
Dissolution of Plutonium Metal in 8-10 M Nitric Acid (2012)

The H-Canyon facility will be used to dissolve Pu metal for subsequent purification and conversion to plutonium dioxide (PuO{sub 2}) using Phase II of HB-Line. To support the new mission, the development of a Pu metal dissolution flowsheet which utilizes concentrated (8-10 M) nitric acid (HNO{sub 3}) solutions containing potassium fluoride (KF) is required. Dissolution of Pu metal in concentrated HNO{sub 3} is desired to eliminate the need to adjust the solution acidity prior to purification by anion exchange. The preferred flowsheet would use 8-10 M HNO{sub 3}, 0.015-0.07 M KF, and 0.5-1.0 g/L Gd to dissolve the Pu up to 6.75 g/L. An alternate flowsheet would use 8-10 M HNO{sub 3}, 0.1-0.2 M KF, and 1-2 g/L B to dissolve the Pu. The targeted average Pu metal dissolution rate is 20 mg/min-cm{sup 2}, which is sufficient to dissolve a 'standard' 2250-g Pu metal button in 24 h. Plutonium metal dissolution rate measurements showed that if Gd is used as the nuclear poison, the optimum dissolution conditions occur in 10 M HNO{sub 3}, 0.04-0.05 M KF, and 0.5-1.0 g/L Gd at 112 to 116 C (boiling). These conditions will result in an estimated Pu metal dissolution rate of {approx}11-15 mg/min-cm{sup 2} and will result in dissolution times of 36-48 h for standard buttons. The recommended minimum and maximum KF concentrations are 0.03 M and 0.07 M, respectively. The maximum KF concentration is dictated by a potential room-temperature Pu-Gd-F precipitation issue at low Pu concentrations. The purpose of the experimental work described in this report was two-fold. Initially a series of screening experiments was performed to measure the dissolution rate of Pu metal as functions of the HNO{sub 3}, KF, and Gd or B concentrations. The objective of the screening tests was to propose optimized conditions for subsequent flowsheet demonstration tests. Based on the rate measurements, this study found that optimal dissolution conditions in solutions containing 0.5-1.0 g/L Gd occurred in 8-10 M HNO{sub 3} with 0.04-0.05 M KF at 112 to 116 C (boiling). The testing also showed that solutions containing 8-10 M HNO{sub 3}, 0.1-0.2 M KF, and 1-2 g/L B achieved acceptable dissolution rates in the same temperature range. To confirm that conditions identified by the dissolution rate measurements for solutions containing Gd or B can be used to dissolve Pu metal up to 6.75 g/L in the presence of Fe, demonstration experiments were performed using concentrations in the optimal ranges. In two of the demonstration experiments using Gd and in one experiment using B, the offgas generation during the dissolution was measured and samples were analyzed for H{sub 2}. The experimental methods used to perform the dissolution rate measurements and flowsheet demonstrations and a discussion of the results are presented.
Fuzzy-rule-embedded Reduction Image Construction Method for Image Enlargement with High Magnification (2014)

This paper proposes a fuzzy-rule-embedded reduction image construction method for image enlargement. A fuzzy rule is generated by considering distribution of pixel value around a target pixel. The generated rule is embedded into the target pixel in a reduction image. The embedded fuzzy rule is used in a fuzzy inference to generate a highly magnified image from the reduction image. Experimental results, which scale factors are three and four, show that the proposed method realizes high-quality image enlargement in terms of both objective and subjective evaluations in comparison with conventional methods.
Expression of a stress‐induced hemoglobin affects NO levels produced by alfalfa root cultures under hypoxic stress (2003)

Transgenic alfalfa root cultures expressing sense and antisense barley hemoglobin transcripts were examined under varying levels of atmospheric oxygen. Root cultures overexpressing the hemoglobin gene (Hb+) maintained root growth when placed under 3% oxygen, whereas control cultures or cultures underexpressing hemoglobin (Hb-) experienced 30-70% declines in growth under the same conditions. ATP levels and ATP/ADP ratios for Hb+ lines did not significantly differ in 40 and 3% oxygen, whereas the ATP levels and ATP/ADP ratios in control and Hb- lines were significantly lower under 3% oxygen. Large increases in the production of nitric oxide (NO) were measured in root cultures grown under hypoxic conditions compared to aerobic conditions. The amount of NO accumulated in an Hb- line was 2.5-fold higher than that in the Hb+ line. Treatment of transgenic root lines under 40% oxygen with NO resulted in significant declines in the ATP levels and ATP/ADP ratio of an Hb- line and the control line, with no significant change in an Hb+ line. The root cell structure of an Hb- line showed evidence of cell breakdown under hypoxic growth, whereas an Hb+ line had no evidence of cell breakdown under similar growth conditions. These results lead us to hypothesize that NO is involved in the response of plants to hypoxia and that hemoglobin modulates the levels of NO in the hypoxic cell.
Cyclic Peptide Inhibitors of Staphylococcal Virulence Prepared by Fmoc-Based Thiolactone Peptide Synthesis (2008)

Virulence factor production in Staphylococcus aureus is largely under the control of the accessory gene regulator (agr) quorum sensing system. There are four agr groups, all of which exhibit bacterial interference: each agr type synthesizes a cyclic autoinducing peptide (AIP) with a distinct sequence that activates its cognate AgrC receptor and inhibits activation of others. To better understand inhibitory AIP-AgrC interactions, we aimed to identify the minimal molecular determinants required to inhibit both non-cognate and cognate receptors. This minimization of the AIP pharmacophore also may have therapeutic relevance as the use of native AIPs to block virulence of non-cognate agr strains can prevent the establishment of an infection in vivo. We synthesized and evaluated the inhibitory activities of 10 AIP derivatives based on a truncated AIP analogue that inhibits all four agr types. To carry out the rapid, parallel synthesis of these peptides, we employed a new linker for Fmoc-based thioester peptide synthesis. Our results identify key structural elements that are necessary for AgrC inhibition and reveal key differences between non-cognate and cognate inhibitory requirements.
User-Oriented Evaluation Methods for Interactive Web Search Interfaces (2007)

Although significant efforts have been devoted to the study and evaluation of information retrieval systems from an algorithmic perspective, far less work has been performed on the evaluation of these systems from the user's perspective. This is certainly the case for Web information retrieval, where the major search engines continue to utilise interfaces that have not changed substantially since their introduction. One of the challenges in developing new Web search interfaces is the evaluation of these systems in comparison to one another, as well as in comparison to the popular Web search engines. In this paper, we highlight some of the methods used in the literature for evaluating Web search systems, and present a summary of the methods that we have found to be effective in dealing with the challenges of evaluating intelligent and interactive Web search interfaces.
Separation and Recovery of Tetramethyl Ammonium Hydroxide with Mesoporous Silica Having a Hexagonal Structure (MCM-41) (2012)

Separation and recovery of tetramethyl ammonium hydroxide (TMAH) was investigated using several types of MCM-41 (mesoporous silica having hexagonal structure) adsorbents. The MCM-41s were prepared by hydrothermal synthesis with structure-directing agents with different alkyl chains. The prepared MCM-41s were characterized with X-ray diffraction, transmission electron microscope, nitrogen gas adsorption, and zeta potential, and then used for adsorption of TMAH. The adsorption of TMAH with MCM-41s increased with pH up to pH ≈ 10 and then decreased as the MCM-41 dissolved. The adsorption of TMAH progressed via the Langmuir mechanism. The maximum adsorption corresponded to the pore diameter and the pore volume of the MCM-41s. MCM-41 also possesses selectivity for TMAH against phenol. The chromatographic operation was conducted using granulated MCM-41 to avoid excessive pressure-drop through the packed column and quantitative adsorption-elution processing of TMAH could be achieved.
A Nondestructive Fiber-Based Imaging System to Assess Tissue-Engineered Vascular Grafts (2012)

The clinical need for alternatives to autologous vein and artery grafts for small-diameter vascular reconstruction have led researches to a tissue-engineering approach. Bioengineered vascular grafts provide a mechanically robust conduit for blood flow while implanted autologous cells remodel the construct to form a fully functional vessel [1]. A typical tissue-engineering approach involves fabricating a vascular scaffold from natural or synthetic materials, seeding the lumen of a vessel with endothelial cells (EC) and the vessel wall with smooth muscle cells or fibroblasts to mimic the functional properties of a native vessel. The cell-seeded vascular scaffold is then preconditioned in vitro using a pulsatile bioreactor to mimic in vivo conditions to enhance vessel maturation before implantation (Fig. 1).
Coordinating DNA replication initiation with cell growth: differential roles for DnaA and SeqA proteins. (1996)

We describe here the development of a new approach to the analysis of Escherichia coli replication control. Cells were grown at low growth rates, in which case the bacterial cell cycle approximates that of eukaryotic cells with G1, S, and G2 phases: cell division is followed sequentially by a gap period without DNA replication, replication of the single chromosome, another gap period, and finally the next cell division. Flow cytometry of such slowly growing cells reveals the timing of replication initiation as a function of cell mass. The data show that initiation is normally coupled to cell physiology extremely tightly: the distribution of individual cell masses at the time of initiation in wild-type cells is very narrow, with a coefficient of variation of less than 9%. Furthermore, a comparison between wild-type and seqA mutant cells shows that initiation occurs at a 10-20% lower mass in the seqA mutant, providing direct evidence that SeqA is a bona fide negative regulator of replication initiation. In dnaA (Ts) mutants the opposite is found: the mass at initiation is dramatically increased and the variability in cell mass at initiation is much higher than that for wild-type cells. In contrast to wild-type and dnaA(Ts) cells, seqA mutant cells frequently go through two initiation events per cell division cycle, and all the origins present in each cell are not initiated in synchrony. The implications for the complex interplay amongst growth, cell division, and DNA replication are discussed.
Synergistic Effect of Hybrid PbS Quantum Dots/2D‐WSe2 Toward High Performance and Broadband Phototransistors (2016)

The transitionmetal dichalcogenides‐based phototransistors have demonstrated high transport mobility but are limited to poor photoresponse, which greatly blocks their applications in optoelectronic fields. Here, light sensitive PbS colloidal quantum dots (QDs) combined with 2D WSe 2 to develop hybrid QDs/2D‐WSe 2 phototransistors for high performance and broadband photodetection are utilized. The device shows a responsivity up to 2 × 10 5 A W –1 , which is orders of magnitude higher than the counterpart of individual material‐based devices. The detection spectra of hybrid devices can be extended to near infrared similar to QDs' response. The high performance of hybrid 0D‐2D phototransistor is ascribed to the synergistic function of photogating effect. PbS QDs can efficiently absorb the input illumination and 2D WSe 2 supports a transport expressway for injected photocarriers. The hybrid phototransistors obtain a specific detectivity over 10 13 Jones in both ON and OFF state in contrast to the depleted working state (OFF) for other reported QDs/2D phototransistors. The present device construction strategy, photogating enhanced performance, and robust device working conditions contain high potential for future optoelectronic devices.