gebhart/patrepeval huggingface dataset:
High-Quality n-Type Ge/SiGe Multilayers for THz Quantum Cascade Lasers (2019)

The exploitation of intersubband transitions in Ge/SiGe quantum cascade devices could pave the way towards the integration of THz light emitters into the silicon-based technology. Aiming at the realization of a Ge/SiGe Quantum Cascade Laser (QCL), we investigate optical and structural properties of n-type Ge/SiGe coupled quantum well systems. The samples have been investigated by means of X-ray diffraction, scanning transmission electron microscopy, atom probe tomography and Fourier Transform Infrared absorption spectroscopy to assess the growth capability with respect to QCL design requirements, carefully identified by means of modelling based on the non-equilibrium Green function formalism.
Oxidized LDL–Induced Microvascular Dysfunction (1995)

Human LDLs oxidized with Cu2+ are known to promote leukocyte-endothelial cell adhesion (LECA) and albumin leakage in postcapillary venules. The objective of this study was to compare the ability of LDL oxidized with Cu2+ (Cu-LDL), phospholipase A2 plus lipoxygenase (PLA2-LDL), horseradish peroxidase plus H2O2 (HRP-LDL), or -OCl (-OCl-LDL) to promote (1)neutrophil-endothelial cell adhesion (NECA) in vitro and (2)LECA and albumin leakage in rat mesenteric venules. In vitro adhesion assays revealed that only Cu-LDL elicited a dose-dependent NECA response, whereas PLA2-LDL but not normal (N-LDL), HRP-LDL, or -OCl-LDL increased NECA at the highest concentration studied (670 micrograms/mL). The magnitude of the NECA responses elicited by the different forms of oxidized LDL was related to the degree of lipid peroxidation but unrelated to the level of protein oxidation. Local intra-arterial infusion of Cu-LDL, PLA2-LDL, or -OCl-LDL but not N-LDL elicited significant increases in leukocyte adherence and emigration, mast cell degranulation, and albumin leakage in rat mesenteric venules. The LECA induced by all forms of oxidized LDL was not accompanied by significant alterations of venular shear rate.
Active graphene plasmonics for terahertz device applications (2014)

This paper reviews recent advances in graphene active plasmonics for terahertz (THz) device applications. Two-dimensional plasmons in graphene exhibit unique optoelectronic properties and mediate extraordinary light–matter interactions. It has been discovered theoretically that when the population of Dirac fermionic carriers in graphene are inverted by optical or electrical pumping, the excitation of graphene plasmons by the THz photons results in propagating surface plasmon polaritons with giant gain in a wide THz range. Furthermore, when graphene is patterned into a micro- or nanoribbon array by grating metallization, the structure acts as an active THz plasmonic amplifier, providing a superradiant plasmonic lasing with a giant gain at the plasmon modes in a wide THz frequency range. These new findings can lead to the creation of new types of plasmonic THz emitters and lasers operating even at room temperature.
The Many Proofs and Applications of Perron’s Theorem (2000)

This paper chronicles the wide dispersal of Perron's 1907 result on positive matrices into many fields of science. The many proofs given during the last 93 years are categorized and critiqued (including Perron's original two proofs), and a more natural proof is presented. This simple-to-understand result of Perron provides a unequaled vehicle for taking students on a tour of many applied areas with some depth.
Targeted analysis of protein citrullination using chemical modification and tandem mass spectrometry (2009)

Protein citrullination originates from enzymatic deimination of polypeptide-bound arginine and is involved in various biological processes during health and disease. However, tools required for a detailed and targeted proteomic analysis of citrullinated proteins in situ, including their citrullination sites, are limited. A widely used technique for detection of citrullinated proteins relies on antibody staining after specific derivatization of citrulline residues by 2,3-butanedione and antipyrine. We have recently reported on the details of this reaction. Here, we show that this chemical modification can be utilized to specifically detect and identify citrullinated peptides and their citrullination sites by liquid chromatography/tandem mass spectrometry (LC/MS/MS) analysis. Using model compounds, we demonstrate that in collision-induced dissociation (CID) a specific, modification-derived fragment ion appears as the dominating signal at m/z 201.1 in the MS/MS spectra. When applying electron transfer dissociation (ETD), however, the chemical modification of citrulline remained intact and extensive sequence coverage allowed identification of peptides and their citrullination sites. Therefore, LC/MS/MS analysis with alternating CID and ETD has been performed, using CID for specific, signature ion-based detection of derivatized citrullinated peptides and ETD for sequence determination. The usefulness of this targeted analysis was demonstrated by identifying citrullination sites in myelin basic protein deiminated in vitro. Combining antibody-based enrichment of chemically modified citrulline-containing peptides with specific mass spectrometric detection will increase the potential of such a targeted analysis of protein citrullination in the future.
Pseudorandom Testing of RAM for Pattern-Sensitive Faults (1990)

This paper deals with detection of patternsensitive faults in Random-Access Memories (RAM) using pseudorandom M-sequences. Two types of neighborhood around each cell
Automatic thesaurus construction using Bayesian networks (1995)

Article Free Access Share on Automatic thesaurus construction using Bayesian networks Authors: Young C. Park Computer Science Department, Korea Advanced Institute of Science and Technology, Taejon, Korea Computer Science Department, Korea Advanced Institute of Science and Technology, Taejon, KoreaView Profile , Young S. Han Computer Science Department, Korea Advanced Institute of Science and Technology, Taejon, Korea Computer Science Department, Korea Advanced Institute of Science and Technology, Taejon, KoreaView Profile , Key-Sun Choi Computer Science Department, Korea Advanced Institute of Science and Technology, Taejon, Korea Computer Science Department, Korea Advanced Institute of Science and Technology, Taejon, KoreaView Profile Authors Info & Claims CIKM '95: Proceedings of the fourth international conference on Information and knowledge managementDecember 1995 Pages 212–217https://doi.org/10.1145/221270.221571Online:02 December 1995Publication History 13citation652DownloadsMetricsTotal Citations13Total Downloads652Last 12 Months3Last 6 weeks1 Get Citation AlertsNew Citation Alert added!This alert has been successfully added and will be sent to:You will be notified whenever a record that you have chosen has been cited.To manage your alert preferences, click on the button below.Manage my AlertsNew Citation Alert!Please log in to your account Save to BinderSave to BinderCreate a New BinderNameCancelCreateExport CitationPublisher SiteeReaderPDF
Water Quality Improvement through Bioretention: Lead, Copper, and Zinc Removal (2003)

Intensive automobile use, weathering of building materials, and atmospheric deposition contribute lead, copper, zinc, and other heavy metals to urban and roadway runoff. Bioretention is a low-impact-development best management practice that has the potential to improve stormwater quality from developed areas. The practice represents a soil, sand, organic matter, and vegetation-based storage and infiltration facility used in parking lots and on individual lots to treat runoff. Investigations using pilot-plant laboratory bioretention systems and two existing bioretention facilities documented their effectiveness at removing low levels of lead, copper, and zinc from synthetic stormwater runoff. Removal rates of these metals (based on concentration and total mass) were excellent, reaching close to 100% for all metals under most conditions, with effluent copper and lead levels mostly less than 5 microg/L and zinc less than 25 microg/L. Somewhat less removal was noted for shallow bioretention depths. Runoff pH, duration, intensity, and pollutant concentrations were varied, and all had minimal effect on removal. The two field investigations generally supported the laboratory studies. Overall, excellent removal of dissolved heavy metals can be expected through bioretention infiltration. Although the accumulation of metals is a concern, buildup problems are not anticipated for more than 15 years because of the low metal concentrations expected in runoff.
Two-dimensional thermal modelling with specular reflections in an experimental annealing furnace (2016)

A distributed-parameter model of the temperature in an experimental annealing device is developed. In particular, the two-dimensional spatial-temporal temperature evolution in a thin steel strip along its length and width is modelled during the heat-up process assuming temperature uniformity along the thickness. The model captures heat flows caused by thermal radiation in the considered partially specular enclosure, thermal conduction, internal forced convection, boundary heat flows, and in-domain heat sinks. Parameter identification is carried out based on the step response of the system measured by thermocouples and a temporarily installed infrared camera. For model verification, the simulated evolution of the temperature field in the specimen is compared with measurements. The relative accuracy of the proposed model is better than 4.4% of the maximum measured temperature.
Suitability of hepatocyte cell lines HepG2, AML12 and THLE-2 for investigation of insulin signalling and hepatokine gene expression (2018)

Immortal hepatocyte cell lines are widely used to elucidate insulin-dependent signalling pathways and regulation of hepatic metabolism, although the often tumorigenic origin might not represent the metabolic state of healthy hepatocytes. We aimed to investigate if murine cell line AML12 and human cell line THLE-2, which are derived from healthy liver cells, are comparable to hepatoma cell line HepG2 for studying acute insulin signalling and expression of gluconeogenic enzymes and hepatokines. Insulin responsiveness of AML12 and THLE-2 cells was impaired when cells were cultured in the recommended growth medium, but comparable with HepG2 cells by using insulin-deficient medium. THLE-2 cells showed low abundance of insulin receptor, while protein levels in HepG2 and AML12 were comparable. AML12 and THLE-2 cells showed only low or non-detectable transcript levels of <i>G6PC</i> and <i>PCK1</i> Expression of <i>ANGPTL4</i> was regulated similarly in HepG2 and AML12 cells upon peroxisome proliferator-activated receptor δ activation but only HepG2 cells resemble the <i>in vivo</i> regulation of hepatic <i>ANGPTL4</i> by cAMP. Composition of the culture medium and protein expression levels of key signalling proteins should be considered when AML12 and THLE-2 are used to study insulin signalling. With regard to gluconeogenesis and hepatokine expression, HepG2 cells appear to be closer to the <i>in vivo</i> situation despite the tumorigenic origin.
Inhibiting IL-2 Signaling and the Regulatory T-Cell Pathway Using Computationally Designed Novel Peptides (2016)

Abstract Regulatory T-cells (TREG) are the gateway to immune function and typically regulate immune cell activation. Cytokines, including interleukin-2 (IL-2), induce T-cell differentiation and promote a regulatory phenotype. Once activated via the IL-2 receptor (IL-2R), a cascade of events in T-cells initiate signal transducer and activator of transcription 5 (STAT5) and Forkhead box P3 (FOXP3) activation which appear to function as important regulators of this immunologic pathway and promote the development and function of TREG cells. In non-Hodgkin lymphoma (NHL), we have found that intratumoral TREG cells are increased in number and suppress immune function. In previous work, we have found that TREG cells inhibit T-cell proliferation, suppress cytokine production and limit effector cell cytotoxicity. We have also shown that increased serum levels of soluble sIL-2Rα is a prognostic factor in NHL and that sIL-2Rα can bind to IL-2 and promote its signaling thereby increasing TREG cell numbers. In this study, we developed a strategy to inhibit the binding of IL-2 to sIL-2Rα with the goal of suppressing the induction of FOXP3 and decreasing TREG cell numbers. To do this, we developed peptides designed to disrupt the interaction between IL2 and sILRα. In collaboration with CMDBioscienceSM, we developed and analyzed 22 peptide compounds derived by structure-based computational design. Initially, we screened each peptide at increasing concentrations using an ELISA assay to test the inhibition of IL-2/IL-2Rα binding by the solubilized peptide. Candidate peptides were then further tested using upregulation of pSTAT5 and FOXP3 in T-cells measured by flow cytometry as a measure of inhibition of IL-2 signaling. The peptides were developed according to different design hypotheses and grouped into different families; the screening ELISA results indicated 4 promising peptides that inhibited IL2/IL2Rα binding (up to 100% inhibition; max peptide concentration of 100uM). These peptides were then used to determine their effect on STAT5 and FOXP3 expression. A lead candidate peptide consistently reduced the expression of FOXP3 and STAT5 expression compared to cells not exposed to peptide. Use of the peptide to disrupt IL-2 signaling inhibited the development of cells with a TREG phenotype. We conclude that structure-based peptide design can be used to identify novel peptide inhibitors that block IL-2/IL-2Rα signaling and inhibit STAT5 and FOXP3 upregulation. These peptides could be used as new therapeutic agents to limit immune suppression by TREG cells and promote a more effective anti-tumor immune response in NHL. Disclosures No relevant conflicts of interest to declare.
Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut (2023)

The molecular bases of how host genetic variation impacts the gut microbiome remain largely unknown. Here we used a genetically diverse mouse population and applied systems genetics strategies to identify interactions between host and microbe phenotypes including microbial functions, using faecal metagenomics, small intestinal transcripts and caecal lipids that influence microbe-host dynamics. Quantitative trait locus (QTL) mapping identified murine genomic regions associated with variations in bacterial taxa; bacterial functions including motility, sporulation and lipopolysaccharide production and levels of bacterial- and host-derived lipids. We found overlapping QTL for the abundance of Akkermansia muciniphila and caecal levels of ornithine lipids. Follow-up in vitro and in vivo studies revealed that A. muciniphila is a major source of these lipids in the gut, provided evidence that ornithine lipids have immunomodulatory effects and identified intestinal transcripts co-regulated with these traits including Atf3, which encodes for a transcription factor that plays vital roles in modulating metabolism and immunity. Collectively, these results suggest that ornithine lipids are potentially important for A. muciniphila-host interactions and support the role of host genetics as a determinant of responses to gut microbes.
Evaluation of a Triage Checklist for Mild COVID-19 Outpatients in Predicting Subsequent Emergency Department Visits and Hospitalization during the Isolation Period: A Single-Center Retrospective Study (2022)

Managing mild illness in COVID-19 and predicting progression to severe disease are concerning issues. Here, we investigated the outcomes of Japanese patients with mild COVID-19, and identified triage risk factors for further hospitalization and emergency department (ED) visits at a single tertiary hospital. A triage checklist with 30 factors was used. Patients recommended for isolation were followed up for 10 days for subsequent ED visits or hospital admission. Overall, 338 patients (median age, 44.0; 45% women) visited the clinic 5.0 days (median) after symptom onset. Thirty-six patients were immediately hospitalized following triage; others were isolated. In total, 72 non-hospitalized patients visited the ED during their isolation, and 30 were hospitalized after evaluation for oxygen desaturation. The median ED visit and hospitalization durations after symptom onset were 5.0 and 8.0 days, respectively. The checklist factors associated with hospitalization during isolation were age > 50 years, body mass index > 25 kg/m2, hypertension, tachycardia with pulse rate > 100/min or blood pressure > 135 mmHg at triage, and >3-day delay in hospital visit after symptom onset. No patients died. Altogether, 80% of patients with mild COVID-19 could be safely isolated at home. Age, BMI, underlying hypertension, date after symptom onset, tachycardia, and systolic blood pressure at triage might be related to later hospitalization.
Innovations of modern Chinese history studies since reform and opening-up (2009)

This paper reviews new developments in the study of modern Chinese history since 1979, especially key questions in modern Chinese history, together with innovations in content, structure and research methods. These new developments reflect the broadening of academic exchanges with foreign countries, the initiation of reforms, the influence of the modernization process, and far-reaching innovations in the discipline of modern Chinese history studies since the reform and opening-up of China.
A System for Denial-of-Service Attack Detection Based on Multivariate Correlation Analysis (2013)

Interconnected systems, such as Web servers, database servers, cloud computing servers and so on, are now under threads from network attackers. As one of most common and aggressive means, denial-of-service (DoS) attacks cause serious impact on these computing systems. In this paper, we present a DoS attack detection system that uses multivariate correlation analysis (MCA) for accurate network traffic characterization by extracting the geometrical correlations between network traffic features. Our MCA-based DoS attack detection system employs the principle of anomaly based detection in attack recognition. This makes our solution capable of detecting known and unknown DoS attacks effectively by learning the patterns of legitimate network traffic only. Furthermore, a triangle-area-based technique is proposed to enhance and to speed up the process of MCA. The effectiveness of our proposed detection system is evaluated using KDD Cup 99 data set, and the influences of both non-normalized data and normalized data on the performance of the proposed detection system are examined. The results show that our system outperforms two other previously developed state-of-the-art approaches in terms of detection accuracy.
Small Charged Rings. III. Heterocyclic Ring Expansion through Aziridinium Salts1-3 (1963)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSmall Charged Rings. III. Heterocyclic Ring Expansion through Aziridinium Salts1-3Nelson J. Leonard, Klaus Jann, Joseph V. Paukstelis, and C. K. SteinhardtCite this: J. Org. Chem. 1963, 28, 6, 1499–1506Publication Date (Print):June 1, 1963Publication History Published online1 May 2002Published inissue 1 June 1963https://pubs.acs.org/doi/10.1021/jo01041a015https://doi.org/10.1021/jo01041a015research-articleACS PublicationsRequest reuse permissionsArticle Views218Altmetric-Citations36LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Abstract 3477: Maximizing the outcome of CD226 stimulation through targeting beyond TIGIT signaling with combination and multi-specific approaches for cancer immunotherapy (2023)

Abstract The CD226 (DNAM-1) axis has emerged as an important immune-modulatory pathway that regulates T cell and NK cell effector functions in the solid tumor microenvironment. Three inhibitory receptors, TIGIT, CD96, and PVRIG, inhibit the activating receptor CD226 by competing for shared ligands (CD112 and CD155) expressed on tumor cells and myeloid cells. Blocking the TIGIT receptor with monoclonal antibodies is a major focus of current clinical development efforts. However, the effectiveness of targeting TIGIT alone in a clinical setting has yet to be demonstrated. We hypothesize that blocking TIGIT alone may not lead to an optimal clinical outcome since immuno-stimulatory interaction between the ligands CD112 and CD155 with CD226 can be competed by inhibitory receptors CD96 and PVRIG in addition to TIGIT. It is therefore interesting to investigate whether all these checkpoints play critical roles in the tumor environment and if inhibiting one or more may be necessary to achieve the maximum CD226 activation in both innate and adaptive immune cells. To address that, we have conducted single-cell analysis and demonstrated high expression levels and co-expression of the three inhibitory receptors on T cell subsets and NK cells in the tumor microenvironment for multiple tumor types. Thus, simultaneous blockade of two or more of these receptors might be required for full CD226 activation and T and NK cell-mediated anti-tumor immunity. We envision developing blocking antibodies to these receptors in the CD226 axis toward potential combinations or multi-specific antibody therapies against solid tumors. Antibodies against all three checkpoints, i.e., TIGIT, CD96, and PVRIG, were selected based on receptor binding and their ability to block the receptor interaction with their ligands. We have demonstrated the functionality of the antibodies against these three targets and explored the best approach to alleviate the suppressive regulation of CD226 signaling. Detailed characterizations of these antibodies have been performed, and multi-specific antibodies have been generated and evaluated. Through this effort, we aim to define and develop the best therapeutic strategy for unleashing the CD226 axis for T and NK cell-mediated anti-tumor immunity. Citation Format: Tom Li Stephen, Qian Zhang, Byung-Kwon Lee, Chao Kong, Rain Sun, Jia Wu, Jie Cui, Hillary Shah, Wenhua Xu, Yun-Yueh Lu, Joshua Whitener, Emily Jackson, Jinping Gan, Francisco Adrian, Liang Schweizer. Maximizing the outcome of CD226 stimulation through targeting beyond TIGIT signaling with combination and multi-specific approaches for cancer immunotherapy [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023; Part 1 (Regular and Invited Abstracts); 2023 Apr 14-19; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2023;83(7_Suppl):Abstract nr 3477.
Cellular proteins involved in rotavirus infection (1999)

Full text is available to authenticated members of The University of Auckland only.