gebhart/patrepeval huggingface dataset:
Processing Frequent 4D Land Seismic Data with Buried Sensors for CO2 Monitoring (2017)

Abstract In 2015, Saudi Aramco started a CO2 Water-Alternating-Gas (WAG) EOR pilot project in an onshore carbonate reservoir. To monitor lateral expansion of the CO2 plume, the area was instrumented with a hybrid surface/downhole permanent seismic monitoring system. This system consists of over 1000 buried seismic sensors at a depth of around 70 m, below the the depth of expected weathering layer to mitigate the time-lapse noise. Despite receiver burial, seismic data still suffers from numerous challenges including: significant amounts of high-amplitude coherent noise such as guided waves, mode conversions, and scattered energy; amplitude variations over space and time caused by source and receiver coupling; variability of wavelet shape and arrival times due to seasonal near-surface variations; and low signal-to-noise ratio (SNR). A novel processing workflow was designed for 4D processing of such data. The workflow involves five critical processes. First, the high-amplitude coherent noise is eliminated using FK-based techniques that are 4D compliant to preserve the reservoir changes between repeated seismic surveys. Second, a four-term joint surface-consistent amplitude-scaling algorithm resolves the amplitude variations. The algorithm allows both source and receiver terms to have different scalars for the same positions, but it restricts the other two terms to be position-invariant over different time-lapse surveys, as the window of analysis does not include the reservoir. This is to guarantee that the source and receiver terms are survey-dependent while the other two terms are survey-independent. Thus, the amplitude variability is linked to source and receiver positions over space and time. It also assures that the reservoir changes are not affected by changes in the overburden. Third, wavelet shape variations are addressed using a four-term joint surface-consistent spiking deconvolution algorithm that applies similar principle as the scaling algorithm. Fourth, the small variations in reflection times between different surveys (4D statics) caused by seasonal variations are corrected by a specialized surface-consistent residual statics algorithm using a common pilot derived from the base survey. Fifth, the pre-stack data is supergrouped to enhance the signal-to-noise ratio and repeatability. The processing workflow has been applied to frequent land 3D seismic data acquired over a CO2 WAG EOR pilot project in Saudi Arabia. As a result, we obtained very repeatable seismic images that may successfully detect small CO2-related changes in a stiff carbonate reservoir.
Predisposing factors for hypoglycemia in the intensive care unit* (2005)

Use of bicarbonate-based substitution fluid during continuous venovenous hemofiltration, a decrease of nutrition without adjustment for insulin infusion, a prior diagnosis of diabetes mellitus, sepsis, and need for inotropic support were found to be associated with hypoglycemia. Simultaneous use of insulin and octreotide may be associated with hypoglycemia.
Temperature Dependence of Jc for RE123 Superconductors (2009)

Most studies on the pinning properties and the relating vortex nature of the RE123 system have been performed at high temperatures around 77 K. However, the pinning characteristics of RE123 at low temperatures have not been well understood yet, while extensive applications using the crycooling system are also strongly expected. In the present study, the Jc-H-T properties have been studied Gd123 single crystal with low level Gd substitution for Ba and Y123 single crystals substituted by small amount of impurity ions, such as Sr and Co, which improve Jc properties accompanying huge peal effect in their Jc-H curves. It was found the increases in Fp as the temperature of the impurity doped Y123 samples decreased were much larger than that of the Gd123 sample, while the Gd123 sample exhibited higher Jc than of the Y123 samples above 77 K. The Jc performance of the Gd123 sample below 50 K was even lower than that of the undoped Y123 sample. This strongly indicates that the RE123 with RE/Ba substitution is not appropriate for low-temperature applications, such as high-field magnets, despite their good Jc performance at high temperatures e.g. 77 K.
Autoradiographic Localization and Quantification of Components of the Renin-Angiotensin System in Tissues (2003)

In situ radioligand binding with autoradiography allows localization and quantification of bound radiolabeled ligands in tissues. This is a very sensitive technique that enables the characterization of binding kinetics and ligand specificity and the quantification of the amount of radioligand bound in different structures within the tissue. This technique is complementary to the higher resolution of immunohistochemical localization of proteins or binding sites on fixed tissue sections and in situ hybridization histochemical localization of mRNA.
Introduction (2021)

Throughout its history, America's task has been the exhilarating one of forging community from multiplicity. From the beginning, the indigenous American population was augmented primarily by northern European settlers, black slaves, and later by immigrants from all the European nations. At the same time that the United States (US) is becoming ethnically more diverse, those who have historically been marginalized in US society are making broader claims for equality and power. With the opening of higher education to women, members of ethnic minorities, and those who could not have afforded it, issues of race, sex, and class have taken on a new urgency both as academic issues and in the day-to-day life of the university. In the final selection, &quot;An Interview About Sex and Date Rape,&quot; Camille Paglia argues that feminism's concern about date rape reflects a naive and unrealistic vision of male sexuality.
Female Urethral Diverticula (2004)

In 1672, the first vesicovaginal fistula (VVF) repair was reported in which quills were used toapproximate wound edges with silk threads (1). Since then, techniques utilizing abdominal,vaginal, and combined abdominal and vaginal approaches with and without tissue interpositionhave been described. This chapter will discuss the current concepts in evaluation and manage-ment of this potentially devastating condition.
Measuring and modeling of a three-dimensional tracer transport in a planted soil column (2013)

Water flow from soil to root is driven by the plant transpiration and an important component of the hydrological cycle. The model R-SWMS combines three-dimensional (3D) water flow and solute transport in soil with a detailed description of root structure in three dimensions [1,2]. This model offers the possibility to calculate root water and solute uptake and flow within the roots, which enables explicit studies with respect to the distribution of water and solutes around the roots as well as local processes at the root-soil interface. In this study, we compared measured data from a tracer experiment using Magnetic Resonance Imaging (MRI) with simulations in order to assess the distribution and magnitude of the water uptake of a young lupine plant. An aqueous solution of the Gadolinium-complex (Gd-DTPA2-) was chosen as a tracer, as it behaves conservatively and is ideally suited for MRI. Water flow in the soil towards the roots can thus be visualized by following the change in tracer concentrations over time. The data were obtained by MRI, providing high resolution 3D images of the tracer distribution and root architecture structures by using a spin echo pulse sequence, which is strongly T1- weighted to be tracer sensitive [3], and T2 –weighted for root imaging [4]. This experimental setup was simulated using the 3D high-resolution numerical model R-SWMS. The comparison between MRI data and the simulations showed extensive effects of root architecture parameters on solute spreading. Although the results of our study showed the strength of combining non-invasive measurements and 3D modeling of solute and water flow in soil-root systems, where the derivation of plant hydraulic parameters such as axial and radial root conductivities is possible, current limitations were found with respect to MRI measurements and process description.
A Quasi-Spherical Air Pressure Probe (2018)

This paper considers an air pressure probe, the head part of which is made in the form of a polyhedron inscribed into a sphere. Wind tunnel testing of the probe models is performed, a mathematical model and an algorithm are constructed to calculate all the altitude and airspeed parameters, and an error estimation is given.
Rapid extraction of fungal DNA for PCR amplification (1992)

Journal Article Rapid extraction of fungal DNA for PCR amplification Get access J.L. Cenis J.L. Cenis Department of Proteccion Vegetal, CIT-INIAApdo 8111, 28080 Madrid, Spain Search for other works by this author on: Oxford Academic PubMed Google Scholar Nucleic Acids Research, Volume 20, Issue 9, 11 May 1992, Page 2380, https://doi.org/10.1093/nar/20.9.2380 Published: 11 May 1992 Article history Accepted: 10 February 1992 Published: 11 May 1992
GcvR interacts with GcvA to inhibit activation of the Escherichia coli glycine cleavage operon (2001)

The Escherichia coli glycine cleavage enzyme system, encoded by the gcvTHP operon, catalyses the oxidative cleavage of glycine to CO(2), NH(3) and a one-carbon methylene group. Transcription of the gcv operon is positively regulated by GcvA and negatively regulated by GcvA and GcvR. Using a LexA-based system for analysing protein heterodimerization, it is shown that GcvR interacts directly with GcvA in vivo to repress gcvTHP expression. Several mutations in either gcvA or gcvR that result in a loss of gcv repression also result in a loss of GcvA/GcvR heterodimerization. Finally, it is shown that the C-terminal half of GcvA is involved in its interaction with GcvR, whilst the entire GcvR protein appears to be necessary for heterodimerization.
Human Monoclonal Antibodies to Rho(D) (1987)

B lymphocytes from Rh negative donors with serum anti-D antibodies were isolated and fused with the mouse-human heteromyeloma, SBC-H20, to produce hybridomas secreting IgM or IgG1 human monoclonal antibodies to D antigen. The IgM antibody in hybridoma supernatant agglutinates all normal D positive cells at the immediate spin phase of reactivity. Using concentrated IgM hybridoma supernatant of approximately 50 micrograms/ml, Du cells were also agglutinated. The IgG1 antibody reacts by indirect hemagglutination with all D and Du cells. Against Rh mosaics, different reactivity was noted for each antibody. Furthermore, D positive cells precoated with the IgG1 antibody inhibit the IgM direct hemagglutination, suggesting that the antibodies identify closely associated epitopes. These human monoclonal antibodies will be useful diagnostic reagents and, ultimately, should be useful in the prevention of Rh hemolytic disease of the newborn.
Caspase-dependent Inactivation of Proteasome Function during Programmed Cell Death in Drosophila and Man (2004)

The caspase family of cysteine proteases plays a conserved role in the coordinate demolition of cellular structures during programmed cell death from nematodes to man. Because cells undergoing programmed cell death in nematodes, flies, and mammals all share common features, this suggests that caspases target a common set of cellular structures in each of these organisms. However, although many substrates for mammalian caspases have been identified, few substrates for these proteases have been identified in invertebrates. To search for similarities between the repertoires of proteins targeted for proteolysis by caspases in flies and mammals, we have performed proteomics-based screens in Drosophila and human cell lines undergoing apoptosis. Here we show that several subunits of the proteasome undergo caspase-dependent proteolysis in both organisms and that this results in diminished activity of this multicatalytic protease complex. These data suggest that caspase-dependent proteolysis decreases protein turnover by the proteasome and that this is a conserved event in programmed cell death from Drosophila to mammals.
Promising Materials for Protective Coatings. Vinyl Ethers of Polyunsaturated Fatty Alcohols (1958)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTPromising Materials for Protective Coatings. Vinyl Ethers of Polyunsaturated Fatty AlcoholsH. M. Teeter, L. E. Gast, and J. C. CowanCite this: Ind. Eng. Chem. 1958, 50, 11, 1703–1704Publication Date (Print):November 1, 1958Publication History Published online1 May 2002Published inissue 1 November 1958https://pubs.acs.org/doi/10.1021/ie50587a053https://doi.org/10.1021/ie50587a053research-articleACS PublicationsRequest reuse permissionsArticle Views50Altmetric-Citations19LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access options Get e-Alerts
A wearable AIEgen-based lateral flow test strip for rapid detection of SARS-CoV-2 RBD protein and N protein (2022)

Accurate and rapid detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is significant for early tracing, isolation, and treatment of infected individuals, which will efficiently prevent large-scale transmission of coronavirus disease 2019 (COVID-19). Here, two kinds of test strips for receptor binding domain (RBD) and N antigens of SARS-CoV-2 are established with high sensitivity and specificity, in which AIE luminogens (AIEgens) are utilized as reporters. Because of the high brightness and resistance to quenching in aqueous solution, the limit of detection can be as low as 6.9 ng/mL for RBD protein and 7.2 ng/mL for N protein. As an antigen collector, an N95 mask equipped with a test strip with an excellent enrichment effect would efficiently simplify the sampling procedures. Compared with a test strip based on Au nanoparticles or fluorescein isothiocyanate (FITC), the AIEgen-based test strip shows high anti-interference capacity in complex biosamples. Therefore, an AIEgen-based test strip assay could be built as a promising platform for emergency use during the pandemic.
EGGNet, a generalizable geometric deep learning framework for protein complex pose scoring (2023)

Abstract Computational prediction of molecule-protein interactions has been key for developing new molecules to interact with a target protein for therapeutics development. Past work includes two independent streams of approaches: (1) predicting protein-protein interactions (PPI) between naturally occurring proteins and (2) predicting the binding affinities between proteins and small molecule ligands (aka drug target interaction, or DTI). Studying the two problems in isolation has limited the ability of these computational models to generalize across the PPI and DTI tasks, both of which ultimately involve non-covalent interactions with a protein target. In this work, we developed an Equivariant Graph of Graphs neural Network (EGGNet), a geometric deep learning framework for molecule-protein binding predictions that can handle three types of molecules for interacting with a target protein: (1) small molecules, (2) synthetic peptides and (3) natural proteins. EGGNet leverages a graph of graphs (GoGs) representation constructed from the molecule structures at atomic-resolution and utilizes a multi-resolution equivariant graph neural network (GNN) to learn from such representations. In addition, EGGNet leverages the underlying biophysics and makes use of both atom- and residue-level interactions, which improve EGGNet’s ability to rank candidate poses from blind docking. EGGNet achieves competitive performance on both a public proteinsmall molecule binding affinity prediction task (80.2% top-1 success rate on CASF-2016) and an synthetic protein interface prediction task (88.4% AUPR). We envision that the proposed geometric deep learning framework can generalize to many other protein interaction prediction problems, such as binding site prediction and molecular docking, helping accelerate protein engineering and structure-based drug development.
Polyfunctional Energetic Nitrates Derived from Tris(hydroxymethyl)aminomethane (Tris) (2017)

A variety of new energetic compounds were synthesized with the tris(hydroxymethyl)aminomethane (Tris) moiety as a building block. The new nitrates were fully characterized, with use of multinuclear NMR spectroscopy, vibrational analysis, mass spectrometry, differential scanning calorimetry, and elemental analysis. The structure of each compound was confirmed by single‐crystal X‐ray diffraction. The energies of formation were calculated with the Gaussian program package, and the detonation parameters were predicted by using the EXPLO5 computer code. Because of the positive oxygen balance ( Ω CO ) of the presented compounds, their performance data as oxidizers were compared to the common oxidizer ammonium perchlorate.
Acute Pyelonephritis in Pregnancy (2005)

The incidence of pyelonephritis has remained low in the era of routine prenatal screening for asymptomatic bacteriuria. First-trimester pyelonephritis accounts for over 1 in 5 antepartum cases. Gram-positive uropathogens are found more commonly as pregnancy progresses. Maternal complications continue, but poor obstetrical outcomes are rare.
Lentiviral–Vector Mediated Expression of Murine IL–1 Receptor Antagonist Reduces the Severity of Endotoxin–Induced Uveitis (2006)

Uveitis is a sight threatening inflammatory disorder that remains a significant cause of visual loss. We investigated lentiviral gene delivery of IL-1ra or IL-10 to ameliorate murine endotoxininduced uveitis (EIU). An HIV-1-based vector containing the mIL-1ra or mIL-10 cDNA demonstrated high expression of biologically active cytokine. Following administration of Lenti.GFP into the anterior chamber, transgene expression was observed in corneal endothelial cells, trabecular meshwork and iris cells. To treat EIU, mice were injected with Lenti.IL-1ra, Lenti.IL-10 or a combination of these. EIU was induced 14 days after vector administration and mice were culled 12 h following disease induction. Lenti.IL-1ra or Lenti.IL10 treated eyes showed significantly lower mean inflammatory cell counts in the anterior and posterior chambers compared with controls. The aqueous total protein content was also significantly lower in treated eyes, demonstrating better preservation of the blood-ocular barrier. Furthermore, the treated eyes showed less in vivo fluorescein leakage from inner retinal vessels compared with controls. The combination of both IL-1ra and IL-10 had no additive effect. Thus, lentiviral gene delivery of IL-1ra or IL-10 significantly reduces the severity of experimental uveitis, suggesting that lentiviral mediated expression of immunomodulatory genes in the anterior chamber offers an opportunity to treat uveitis.
Intel HEXL (2021)

Modern implementations of homomorphic encryption (HE) rely heavily on polynomial arithmetic over a finite field. This is particularly true of the BGV, BFV, and CKKS HE schemes. Two of the biggest performance bottlenecks in HE primitives and applications are polynomial modular multiplication and the forward and inverse number-theoretic transform (NTT). Here, we introduce Intel® Homomorphic Encryption Acceleration Library (Intel® HEXL), a C++ library which provides optimized implementations of polynomial arithmetic for Intel® processors. Intel HEXL takes advantage of the recent Intel® Advanced Vector Extensions 512 (Intel® AVX512) instruction set to provide state-of-the-art implementations of the NTT and modular multiplication, measuring up to 7.2x single-threaded speedup over a native C++ baseline. Intel HEXL is available open-source at https://github.com/intel/hexl under the Apache 2.0 license and has been adopted by the Microsoft SEAL and PALISADE homomorphic encryption libraries
Autonomous navigation for urban service mobile robots (2010)

We present to the robotic community a fully autonomous navigation solution for mobile robots operating in urban pedestrian areas. We introduce our robots and the experimental zone, overview the architecture of the navigation framework, and present the results after 3.5km of autonomous navigation. We expose the main lessons learnt by the scientific team and identify the issues to improve future works.
Users' guides to the medical literature. III. How to use an article about a diagnostic test. B. What are the results and will they help me in caring for my patients? The Evidence-Based Medicine Working Group (1994)

<h3>CLINICAL SCENARIO</h3> You are back where we put you in the previous article<sup>1</sup>on diagnostic tests in this series on how to use the medical literature: in the library studying an article that will guide you in interpreting ventilation-perfusion (V/Q) lung scans. Using the criteria in Table 1, you have decided that the Prospective Investigation of Pulmonary Diagnosis (PIOPED) study<sup>2</sup>will provide you with valid information. Just then, another physician comes looking for an article to help with the interpretation of V/Q scanning. Her patient is a 28-year-old man whose acute onset of shortness of breath and vague chest pain began shortly after completing a 10-hour auto trip. He experienced several episodes of similar discomfort in the past, but none this severe, and is very apprehensive about his symptoms. After a normal physical examination, electrocardiogram and chest radiograph, and blood gas measurements that show a Pco<sub>2</sub>of
Reasoning with Limited Resources: Active Logics Expressed as Labeled Deductive Systems (2005)

Reasoning with limited computational resources (such as time or memory) is an important problem, in particular in knowledge-intensive embedded systems. Classical logic is usually considered inappropriate for this purpose as no guarantees regarding deadlines can be made. One of the moreinteresting approaches to address this problem is built around the concept of active logics. Although a step in the right direction, active logics are just a preliminary attempt towards finding an acceptable solution. Our work is based on the assumption that Labeled Deductive Systems offer appropriate metamathematical methodology to study the problem. As a first step, we have reformulated a pair of active logics systems, namely the memory model and its formalized simplification, the step logic, as Labeled Deductive Systems. This paper presents our motivation behind this project, followed by an overview of the investigations on meta-reasoning relevant to this work, and introduces in some reasonable detail the MM system.
Biological evaluation of Wratizolin penetration from ointments to the skin. (1983)

The degree of Wratizolin penetration to the skin from ointments prepared in 6 different media was determined. Experiments were carried out in mice and guinea pigs using: a) method determining the decrement of cytotoxic and antibacterial activity of the tested ointment contacted with the skin, b) biological tests to check the presence-of the drug in tissue extracts. Absorption of Wratizolin appeared dependent upon the kind of base ointment. The preparation penetrated well when suspended in polyethylene glycol base ointment (PEG).