gebhart/patrepeval huggingface dataset:
Identification of individual and few layers of WS2 using Raman Spectroscopy (2013)

The Raman scattering of single- and few-layered WS2 is studied as a function of the number of S-W-S layers and the excitation wavelength in the visible range (488, 514 and 647 nm). For the three excitation wavelengths used in this study, the frequency of the A1g(Γ) phonon mode monotonically decreases with the number of layers. For single-layer WS2, the 514.5 nm laser excitation generates a second-order Raman resonance involving the longitudinal acoustic mode (LA(M)). This resonance results from a coupling between the electronic band structure and lattice vibrations. First-principles calculations were used to determine the electronic and phonon band structures of single-layer and bulk WS2. The reduced intensity of the 2LA mode was then computed, as a function of the laser wavelength, from the fourth-order Fermi golden rule. Our observations establish an unambiguous and nondestructive Raman fingerprint for identifying single- and few-layered WS2 films.
Engineering 'Golden' Fluorescence by Selective Pressure Incorporation of Non-canonical Amino Acids and Protein Analysis by Mass Spectrometry and Fluorescence (2018)

Fluorescent proteins are fundamental tools for the life sciences, in particular for fluorescence microscopy of living cells. While wild-type and engineered variants of the green fluorescent protein from Aequorea victoria (avGFP) as well as homologs from other species already cover large parts of the optical spectrum, a spectral gap remains in the near-infrared region, for which avGFP-based fluorophores are not available. Red-shifted fluorescent protein (FP) variants would substantially expand the toolkit for spectral unmixing of multiple molecular species, but the naturally occurring red-shifted FPs derived from corals or sea anemones have lower fluorescence quantum yield and inferior photo-stability compared to the avGFP variants. Further manipulation and possible expansion of the chromophore's conjugated system towards the far-red spectral region is also limited by the repertoire of 20 canonical amino acids prescribed by the genetic code. To overcome these limitations, synthetic biology can achieve further spectral red-shifting via insertion of non-canonical amino acids into the chromophore triad. We describe the application of SPI to engineer avGFP variants with novel spectral properties. Protein expression is performed in a tryptophan-auxotrophic E. coli strain and by supplementing growth media with suitable indole precursors. Inside the cells, these precursors are converted to the corresponding tryptophan analogs and incorporated into proteins by the ribosomal machinery in response to UGG codons. The replacement of Trp-66 in the enhanced "cyan" variant of avGFP (ECFP) by an electron-donating 4-aminotryptophan results in GdFP featuring a 108 nm Stokes shift and a strongly red-shifted emission maximum (574 nm), while being thermodynamically more stable than its predecessor ECFP. Residue-specific incorporation of the non-canonical amino acid is analyzed by mass spectrometry. The spectroscopic properties of GdFP are characterized by time-resolved fluorescence spectroscopy as one of the valuable applications of genetically encoded FPs in life sciences.
Technoeconomic Evaluation of Solid Oxide Fuel Cell Hydrogen-Electricity Co-Generation Concepts (2023)

This report evaluates the cost and performance of several types of Integrated Energy Systems (IES) based on solid oxide fuel cells (SOFCs) to generate power and solid oxide electrolysis cells (SOECs) to produce hydrogen. All cases feature carbon capture at rates exceeding 97 percent. The report also describes the development of optimized steady state process models for each system. These are used to calculate overall electricity and hydrogen production costs using a consistent methodology that facilitates comparisons of these cases to one another and to prior NETL cost and performance estimates. The SOFC and SOEC costs and performance are based on nth-of-a-kind systems and include research and development and learning associated with mass-scale commercial deployment of the technology over the next decade required for commercial utility-scale systems.
Tandem acoustic modeling in large-vocabulary recognition (2002)

In the tandem approach to modeling the acoustic signal, a neural-net preprocessor is first discriminatively trained to estimate posterior probabilities across a phone set. These are then used as feature inputs for a conventional hidden Markov model (HMM) based speech recognizer, which relearns the associations to subword units. We apply the tandem approach to the data provided for the first Speech in Noisy Environments (SPINE1) evaluation conducted by the Naval Research Laboratory (NRL) in August 2000. In our previous experience with the ETSI Aurora noisy digits (a small-vocabulary, high-noise task) the tandem approach achieved error-rate reductions of over 50% relative to the HMM baseline. For SPINE1, a larger task involving more spontaneous speech, we find that, when context-independent models are used, the tandem features continue to result in large reductions in word-error rates relative to those achieved by systems using standard MFC or PLP features. However, these improvements do not carry over to context-dependent models. This may be attributable to several factors which are discussed in the paper.
Layer-by-layer assembled films of nanoparticles: materials perspectives and photonics and biophotonics applications (2002)

The layer-by-layer assembly (LBL) of hybrid polyelectrolyte/nanoparticle thin films and the structural features of thin film prepared by it are discussed. The areas of applications, which are currently considered for LBL assemblies include photovoltaics, light-emitting diodes, high-density magnetic memory, non-linear optical switches, nanoscale interconnects, resist layer, sensors, gas separation membranes, optical filters, and others. This technique is quite simple and based on the sequential adsorption of alternating (mono)layers of oppositely charged inorganic colloids and polyelectrolytes and results in composite materials combining mechanical properties of polymers and unique physical characteristics of nanosized inorganic clusters. The nanoparticles are made prior to the assembly, and therefore, allow for the accurate control over their size and size distribution.
A 24-Week Open-Label Extension Study of Olanzapine-Fluoxetine Combination and Olanzapine Monotherapy in the Treatment of Bipolar Depression (2006)

The present findings suggest that long-term treatment with olanzapine-fluoxetine combination may be a useful option for the management of depressive symptoms and carries a low risk of mania emergence.
Highly Stretchable Conductor by Self-Assembling and Mechanical Sintering of a 2D Liquid Metal on a 3D Polydopamine-Modified Polyurethane Sponge (2019)

A highly stretchable conductor was fabricated through dip-coating a new liquid metal (LM) electric ink on a polydopamine (PDA)-modified three-dimensional (3D) polyurethane sponge (PUS) followed by mechanical sintering. The LM was first sonicated to nanodroplets to reduce the consumption of LM and then modified by 3-mercaptopropionic acid (LMNPS-MPA) to improve the interfacial adhesion between LM and PUS. The denser and even distribution of LMNPS-MPA self-assembling on PDA-treated PUS (PUS-PDA) was successfully prepared via hydrogen bonding interactions. Mechanical sintering of 3D PUS-PDA coated by a two-dimensional (2D) LM layer was then conducted to obtain a continuous conductive network. Comparing with those of the reported 3D conductors, the resulting PUS-PDA-LM composite conductor shows both high electrical conductivity (478 S cm<sup>-1</sup>) under a low LM consumption of 10 vol% and excellent conductivity stability with the relative resistance change, Δ<i>R</i>/<i>R</i><sub>0</sub>, of 2% at 50% strain under stretching deformation. The as-prepared PUS-PDA-LM composites were then successfully applied as flexible and stretchable light-emitting diode (LED) arrays with excellent conductivity and conductivity stability at different deformations. We believe that the 3D stretchable PUS-PDA-LM conductor has many potential applications in flexible sensors, flexible circuits, rollable displays, etc.
Arg506GIn Factor V Mutation (Factor V Leiden) in Patients with Ischaemic Cerebrovascular Disease and Survivors of Myocardial Infarction (1995)

The point mutation Arg506- > Gln of factor V was recently shown to be an important and relatively common genetic cause of venous thromboembolism. Using a DNA technique based on polymerase chain reaction, we surveyed the blood samples of 236 patients with ischaemic stroke or a transient ischaemic attack, 122 survivors of myocardial infarction and 137 control subjects for the presence of this mutation. Although the frequency of the factor V mutation in patients with arterial disease (4.5%) was not significantly different from that in healthy blood donors (2.9%), a carrier status for this mutant gene was associated with symptoms of migraine and relatively mild angiographic abnormalities among patients with cerebrovascular disease. A more extensive study addressing the occurrence and significance of the mutant factor V mutation in patients with vasospastic cerebrovascular diseases seems to be warranted.
The repeat region of cortactin is intrinsically disordered in solution (2017)

The multi-domain protein, cortactin, contains a 37-residue repeating motif that binds to actin filaments. This cortactin repeat region comprises 6½ similar copies of the motif and binds actin filaments. To better understand this region of cortactin, and its fold, we conducted extensive biophysical analysis. Size exclusion chromatography with multi-angle light scattering (SEC-MALS) reveals that neither constructs of the cortactin repeats alone or together with the adjacent helical region homo-oligomerize. Using circular dichroism (CD) we find that in solution the cortactin repeats resemble a coil-like intrinsically disordered protein. Small-angle X-ray scattering (SAXS) also indicates that the cortactin repeats are intrinsically unfolded, and the experimentally observed radius of gyration (R <sub>g</sub>) is coincidental to that calculated by the program Flexible-Meccano for an unfolded peptide of this length. Finally, hydrogen-deuterium exchange mass spectrometry (HDX-MS) indicates that the domain contains limited hydrophobic core regions. These experiments therefore provide evidence that in solution the cortactin repeat region of cortactin is intrinsically disordered.
Active probing of cloud multiple scattering, optical depth, vertical thickness, and liquid water content using wide-angle imaging lidar (2002)

At most optical wavelengths, laser light in a cloud lidar experiment is not absorbed but merely scattered out of the beam, eventually escaping the cloud via multiple scattering. There is much information available in this light scattered far from the input beam, information ignored by traditional 'on-beam' lidar. Monitoring these off-beam returns in a fully space- and time-resolved manner is the essence of our unique instrument, Wide Angle Imaging Lidar (WAIL). In effect, WAIL produces wide-field (60-degree full-angle) 'movies' of the scattering process and records the cloud's radiative Green functions. A direct data product of WAIL is the distribution of photon path lengths resulting from multiple scattering in the cloud. Following insights from diffusion theory, we can use the measured Green functions to infer the physical thickness and optical depth of the cloud layer, and, from there, estimate the volume-averaged liquid water content. WAIL is notable in that it is applicable to optically thick clouds, a regime in which traditional lidar is reduced to ceilometry. Here we present recent WAIL data on various clouds and discuss the extension of WAIL to full diurnal monitoring by means of an ultra-narrow magneto-optic atomic line filter for daytime measurements.
Phosphorylation of the Carboxyl Terminus of Inner Centromere Protein (INCENP) by the Aurora B Kinase Stimulates Aurora B Kinase Activity (2002)

How the events of mitosis are coordinated is not well understood. Intriguing mitotic regulators include the chromosomal passenger proteins. Loss of either of the passengers inner centromere protein (INCENP) or the Aurora B kinase results in chromosome segregation defects and failures in cytokinesis. Furthermore, INCENP and Aurora B have identical localization patterns during mitosis and directly bind each other in vitro. These results led to the hypothesis that INCENP is a direct substrate of Aurora B. Here we show that the Caenorhabditis elegans Aurora B kinase AIR-2 specifically phosphorylated the C. elegans INCENP ICP-1 at two adjacent serines within the carboxyl terminus. Furthermore, the full length and a carboxyl-terminal fragment of ICP-1 stimulated AIR-2 kinase activity. This increase in AIR-2 activity required that AIR-2 phosphorylate ICP-1 because mutation of both serines in the AIR-2 phosphorylation site of ICP-1 abolished the potentiation of AIR-2 kinase activity by ICP-1. Thus, ICP-1 is directly phosphorylated by AIR-2 and functions in a positive feedback loop that regulates AIR-2 kinase activity. Since the Aurora B phosphorylation site within INCENP and the functions of INCENP and Aurora B have been conserved among eukaryotes, the feedback loop we have identified is also likely to be evolutionarily conserved.
Functional alpha7 nicotinic receptors are expressed on immature granule cells of the postnatal dentate gyrus (2014)

Neurogenesis occurs throughout life in the subgranular zone of the dentate gyrus, and postnatal-born granule cells migrate into the granule cell layer and extend axons to their target areas. The α7*nicotinic receptor has been implicated in neuronal maturation during development of the brain and is abundant in interneurons of the hippocampal formation of the adult brain. Signalling through these same receptors is believed also to promote maturation and integration of adult-born granule cells in the hippocampal formation. We therefore aimed to determine whether functional α7*nicotinic receptors are expressed in developing granule cells of the postnatal dentate gyrus. For these experiments we used 2-3 week-old Wistar rats, and 2-9 week old transgenic mice in which GABAergic interneurons were marked by expression of green fluorescent protein. Immunohistochemistry indicated the presence of α7*nicotinic receptor subunits around granule cells close around the subgranular zone which correlated with the distribution of developmental markers for immature granule cells. Whole-cell patch clamp recording showed that a proportion of granule cells responded to puffed ACh in the presence of atropine, and that these cells possessed electrophysiological properties found in immature granule cells. The nicotinic responses were potentiated by an allosteric α7*nicotinic receptor modulator, which were blocked by a specific α7*nicotinic receptor antagonist and were not affected by ionotropic glutamate or GABA receptor antagonists. These results suggest the presence of functional somato-dendritic α7*nicotinic receptors on immature granule cells of the postnatal dentate gyrus, consistent with studies implicating α7*nicotinic receptors in dendritic maturation of dentate gyrus neurons in adult brain.
Ig Knock-In Mice Producing Anti-Carbohydrate Antibodies: Breakthrough of B Cells Producing Low Affinity Anti-Self Antibodies (2008)

Natural Abs specific for the carbohydrate Ag Galalpha1-3Galbeta1-4GlcNAc-R (alphaGal) play an important role in providing protective host immunity to various pathogens; yet little is known about how production of these or other anti-carbohydrate natural Abs is regulated. In this study, we describe the generation of Ig knock-in mice carrying functionally rearranged H chain and L chain variable region genes isolated from a B cell hybridoma producing alphaGal-specific IgM Ab that make it possible to examine the development of B cells producing anti-carbohydrate natural Abs in the presence or absence of alphaGal as a self-Ag. Knock-in mice on a alphaGal-deficient background spontaneously developed alphaGal-specific IgM Abs of a sufficiently high titer to mediate rejection of alphaGal expressing cardiac transplants. In the spleen of these mice, B cells expressing alphaGal-specific IgM are located in the marginal zone. In knock-in mice that express alphaGal, B cells expressing the knocked in BCR undergo negative selection via receptor editing. Interestingly, production of low affinity alphaGal-specific Ab was observed in mice that express alphaGal that carry two copies of the knocked in H chain. We suggest that in these mice, receptor editing functioned to lower the affinity for self-Ag below a threshold that would result in overt pathology, while allowing development of low affinity anti-self Abs.
Glycosaminoglycan structures required for strong binding to midkine, a heparin-binding growth factor (2002)

Midkine (MK), a heparin-binding growth factor, binds strongly to oversulfated structures in chondroitin sulfates (CSs) and heparan sulfate. To elucidate the carbohydrate structure actually involved in the strong binding, dissected brains from 13-day mouse embryos were incubated with [14C]-glucosamine. The labeled glycosaminoglycans were fractionated by MK-agarose affinity chromatography to a weakly binding fraction, which was eluted by 0.5 M NaCl, and a strongly binding fraction, which was eluted by higher NaCl concentrations. Among the unsaturated disaccharides released from the strongly binding fraction by chondroitinase ABC, DeltaDi-diSE with 4,6-disulfated N-acetylgalactosamine accounted for 32.3%, whereas its content was lower in the weakly binding fraction. Artificial CS-E structure was formed using N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase purified from squid or recombinant human enzyme. Analysis of the products and their interaction with MK revealed that E units without 3-O-sulfation of glucuronic acid are sufficient for strong binding, provided that they are present as a dense cluster. Among the sulfated disaccharides released by heparitinase digestion, the trisulfated one, DeltaDiHS-triS, was the most abundant in the strongly binding fraction and was lower in the weakly binding fraction. Together with results of previous studies, we concluded that the multivalent trisulfated heparin-like unit is another structure involved in strong binding to MK.
Patients’ Views on Surgeons’ Financial Conflicts of Interest (2013)

Most patients are not worried about possible financial relationships between their surgeon and industry. They clearly distinguish financial relationships that benefit current or future patients from those that benefit the surgeon or device manufacturer. They favor disclosure with professional oversight as a method of managing financial relationships between surgeons and manufacturers.
Do We Need Heparin Coating for Extracorporeal Membrane Oxygenation? New Concepts and Controversial Positions About Coating Surfaces of Extracorporeal Circuits (2014)

Blood contact with surfaces of the extracorporeal circuit provokes the activation of the coagulation system. To improve biocompatibility of the extracorporeal circuit without increasing the risk of bleeding, coatings of artificial surfaces were designed; many of them involve the use of heparin. Data in the literature show that heparin-induced thrombocytopenia is a major issue in the extracorporeal membrane oxygenation scenario, and no relevant benefits have been shown comparing heparin and no-heparin coating.
Reversible and Multisensitive Quantum Dot Gels (2011)

Functional fluorescent semiconductor quantum dot (QD) based gels prepared via immobilizing QDs in organic matrices have shown promising properties, but the compatibility of QDs and organic matrix is not good, and the interactions of the ligands on the surface of QDs with organic matrix are weak, which lead to poor dispersion of QDs in the formed gel and decrease of photoluminescence after gelation in some cases. In this work, we report a hyperbranched macromolecule that can not only act as an excellent ligand to stabilize QD but also act as a good gelator that can gel QD solution to form a reversible and multiresponsive fluorescent gel. This hyperbranched macromolecule-capped QD is stable, and the sol–gel switching can be easily realized via heating and ultrasonicating. Most important, the formed QD gel shows stronger fluorescence than that of the corresponding solution. This novel QD-hyperbranched macromolecule inorganic/organic hybrid network shows great promise in fields such as imaging, sensors, drug release, and nanoscience.
Overview of Immunological Studies on A-bomb Survivors (1991)

Among the peripheral blood lymphocytes, T-cells and B-cells significantly decreased in number with age. Radiation exposure resulted in further significant decrease of T-cell count (but not B cells) in the elderly. T-cell response to PHA and allo-antigens also decreased with dose in the elderly group. In contrast, NK cell number and function increased with age while a significant dose effect was not observed.
Salinity Effect in Cloud Point Phenomena by Nonionic Surfactants Used in Enhanced Oil Recovery Tests (2013)

The cloud point phenomenon for solutions of polyoxyethylene (POE)-type nonionic surfactants (B, C, D, and E) in different salt concentrations was investigated. The cloud point temperature, T c , increased with elongation of the POE chain. This demonstrated that the solvophilicity of the surfactants comes from POE chain. Thus, the cloud point decreased with increase of salt concentration. Surfactants D and E were the only ones that showed cloud point temperatures above the average temperature of oil wells (~70°C), even at high concentrations of salt, and surfactant E was most suitable for enhanced oil recovery operations.
Randomized, double-blind, parallel groups, placebo-controlled study of efficacy and safety of Rynatan in the treatment of allergic rhinitis using an acute model. (1990)

We conducted a randomized, double-blind, parallel groups, placebo-controlled acute study of Rynatan (8 mg chlorpheniramine tannate, 25 mg pyrilamine tannate, 25 mg phenylephrine tannate) in 104 volunteers with allergic rhinitis. Subjects reported to City Park on a Saturday morning during the height of the grass pollen season in late spring and remained in the park for eight hours that day and on the following day. Cards were completed hourly to evaluate symptoms of allergic rhinitis and adverse experiences caused by therapy. The first three cards completed on Saturday morning were used to demonstrate that each subject had had at least minimal symptoms of allergic rhinitis and to determine baseline symptoms. Rynatan or placebo was given at noon and 7:30 PM that day and at 8:30 AM the next day. Subjects completed symptom cards hourly until 4:30 PM on Saturday, three cards that evening, and eight cards hourly the next day until 4:30 PM. The group receiving Rynatan had significantly more allergic rhinitis symptom relief than the placebo group (P = .003). More subjects in the Rynatan group (34/52) reported global symptom improvement than did subjects in the placebo group (18/52, P = .002). There were no significant severe adverse experiences and no statistically significant differences between treatment groups in incidence or severity of drowsiness, dizziness, jitteriness, headache, or nausea. We conclude that Rynatan is safe and effective in treating acute symptoms of allergic rhinitis in otherwise healthy adult subjects.