gebhart/patrepeval huggingface dataset:
Modulation of the lung inflammatory response to ozone by the estrous cycle (2019)

Emerging evidence suggests that sex differences exist in the control of lung innate immunity; however, the specific roles of sex hormones in the inflammatory response, and the mechanisms involved are unclear. Here, we investigated whether fluctuations in circulating hormone levels occurring in the mouse estrous cycle could affect the inflammatory response to air pollution exposure. For this, we exposed female mice (C57BL/6J, 8 weeks old) at different phases of the estrous cycle to 2 ppm of ozone or filtered air (FA) for 3 h. Following exposure, we collected lung tissue and bronchoalveolar lavage fluid (BAL), and performed lung function measurements to evaluate inflammatory responses and respiratory mechanics. We found a differential inflammatory response to ozone in females exposed in the luteal phase (metestrus, diestrus) versus the follicular phase (proestrus, estrus). Females exposed to ozone in the follicular phase had significantly higher expression of inflammatory genes, including Ccl2, Cxcl2, Ccl20, and Il6, compared to females exposed in the luteal phase (P < 0.05), and displayed differential activation of regulatory pathways. Exposure to ozone in the follicular phase also resulted in higher BAL neutrophilia, lipocalin levels, and airway resistance than exposure in the luteal phase (P < 0.05). Together, these results show that the effects of ozone exposure in the female lung are affected by the estrous cycle phase, and potentially hormonal status. Future studies investigating air pollution effects and inflammation in women should consider the menstrual cycle phase and/or circulating hormone levels.
Gaussian error models for object recognition (2002)

The probability of false positives and negatives is derived as a function of the number of model features, image features, and occlusion, under the assumption of 2D Gaussian noise and a particular method of evidence accumulation. No assumptions are made about prior distributions on the model space, nor is even the presence of the model assumed. The results are presented in the form of ROC (receiver-operating characteristic) curves, from which several results can be extracted. They demonstrate that the 2D Gaussian error model has better performance than that of the bounded uniform model for the same level of occlusion and clutter. They also directly indicate the optimal performance that can be achieved for a given clutter and occlusion rate and how to choose the thresholds to achieve the desired rates. These ROC curves are verified in the domain of simulated images.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
A Dual-Rate Kalman Filter for Continuous Glucose Monitoring (2006)

A dual-rate Kalman filter is developed for realtime continuous glucose monitoring. Frequent (5 minute) sampling of a noisy, continuous glucose sensor is used for estimation of glucose and its rate-of-change. Infrequent (8 hour intervals) reference glucose meter samples enable the sensor gain and its rate-of-change to be updated. The dual-rate Kalman filter formulation accounts for uncertainty in both the continuous glucose sensor and the reference glucose meter. The method is tested on simulated and experimental data, confirming its superiority to simple one-point calibration.
Automatic Video Object Segmentation Using Volume Growing and Hierarchical Clustering (2004)

We introduce an automatic segmentation framework that blends the advantages of color-, texture-, shape-, and motion-based segmentation methods in a computationally feasible way. A spatiotemporal data structure is first constructed for each group of video frames, in which each pixel is assigned a feature vector based on low-level visual information. Then, the smallest homogeneous components, so-called as volumes, are expanded from selected marker points using an adaptive, three-dimensional, centroid-linkage method. Self descriptors that characterize each volume and relational descriptors that capture the mutual properties between pairs of volumes are determined by evaluating the boundary, trajectory, and motion of the volumes. These descriptors are used to measure the similarity between volumes based on which volumes are further grouped into objects. A fine-to-coarse clustering algorithm yields a multiresolution object tree representation as an output of the segmentation.
Post-CNS-inflammation expression of CXCL12 promotes the endogenous myelin/neuronal repair capacity following spontaneous recovery from multiple sclerosis-like disease (2016)

These data link CXCL12 expression in the DG and CC of EAE-recovering mice to the promotion of neuro/oligodendrogenesis generating CXCR4(+) CXCL12(+) neuronal and oligodendrocyte progenitor cells endowed with intrinsic neuro/oligondendroglial differentiation potential. These findings highlight the post-CNS-inflammation role of CXCL12 in augmenting the endogenous myelin/neuronal repair capacity in MS-like disease, likely via CXCL12/CXCR4 autocrine signaling.
Radiobiological issues in proton therapy (2017)

The relative biological effectiveness (RBE) for particle therapy is a complex function of particle type, radiation dose, linear energy transfer (LET), cell type, endpoint, etc. In the clinical practice of proton therapy, the RBE is assumed to have a fixed value of 1.1. This assumption, along with the effects of physical uncertainties, may mean that the biologically effective dose distributions received by the patient may be significantly different from what is seen on treatment plans. This may contribute to unforeseen toxicities and/or failure to control the disease. Variability of Proton RBE: It has been shown experimentally that proton RBE varies significantly along the beam path, especially near the end of the particle range. While there is now an increasing acceptance that proton RBE is variable, there is an ongoing debate about whether to change the current clinical practice. Clinical Evidence: A rationale against the change is the uncertainty in the models of variable RBE. Secondly, so far there is no clear clinical evidence of the harm of assuming proton RBE to be 1.1. It is conceivable, however, that the evidence is masked partially by physical uncertainties. It is, therefore, plausible that reduction in uncertainties and their incorporation in the estimation of dose actually delivered may isolate and reveal the variability of RBE in clinical practice. Nevertheless, clinical evidence of RBE variability is slowly emerging as more patients are treated with protons and their response data are analyzed. Modelling and Incorporation of RBE in the Optimization of Proton Therapy: The improvement in the knowledge of RBE could lead to better understanding of outcomes of proton therapy and in the improvement of models to predict RBE. Prospectively, the incorporation of such models in the optimization of intensity-modulated proton therapy could lead to improvements in the therapeutic ratio of proton therapy.
Characterization of monoclonal antibodies specific for the Lewis a human blood group determinant. (1983)

Four hybridoma cell lines were derived from the spleen cells of mice immunized with the neutral glycolipids of human meconium. The antibodies secreted by these lines were specific for the Lewis a antigen of the human Lewis blood group system as determined by solid phase immunoassay using synthetic carbohydrate antigens and by plate binding assay and thin layer chromatography-autoradiography using natural glycolipid antigens. Coating protein A-bearing Staphylococcus aureus with one of the antibodies yielded a stable reagent that produced rapid agglutination of Lewis a positive human erythrocytes. The fine structural specificity of these antibodies was assessed by competition radioimmunoassay using synthetic structural analogs of Lewis a conjugated to bovine serum albumin. One antibody was specific for the Lewis a trisaccharide (Gal beta 1 leads to 3(Fuc alpha 1 leads to 4) beta GlcNAc), while a second recognized the entire Lea (1 leads to 3) beta Gal tetrasaccharide. The third and fourth were directed at topography largely provided by only the alpha Fuc and beta GlcNAc units. These monoclonal antibodies not only represent potentially useful reagents for detecting the Lewis a antigen but also provide a system for studying precise relationships between anticarbohydrate antibody structure and binding specificity.
Carbon-13 magnetic resonance spectra of diamagnetic cyano complexes (1979)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTCarbon-13 magnetic resonance spectra of diamagnetic cyano complexesJoseph J. Pesek and W. Roy MasonCite this: Inorg. Chem. 1979, 18, 4, 924–928Publication Date (Print):April 1, 1979Publication History Published online1 May 2002Published inissue 1 April 1979https://pubs.acs.org/doi/10.1021/ic50194a006https://doi.org/10.1021/ic50194a006research-articleACS PublicationsRequest reuse permissionsArticle Views174Altmetric-Citations63LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Intranasal Challenge of Mice with Herpes Simplex Vims: An Experimental Model for Evaluation of the Efficacy of Antiviral Drugs (1976)

An experimental model of herpetic infection based on intranasal challenge of 12-day-old mice with herpes simplex virus (type 1) has been developed for assessment of the efficacy of a variety of antiviral compounds with clinical potential: cytosine arabinoside, adenine arabinoside, iododeoxyuridine, ribavirin, chloriteoxidized oxyamylose, polyriboinosinic-polyribocytidylic acid, and interferon. The model employed is reminiscent of herpetic encephalitis in humans in both the portal of entry (nasopharyngeal cavity) and the mode of transmission (nerve route) of the virus to the target organ (brain). The mortality rate from viral infection was significantly reduced (greater than or equal to 30%) by the following treatment regimens: cytosine arabinoside, adenine arabinoside, iododeoxyuridine, and ribavirin, administered daily for seven consecutive days starting immediately after inoculation of virus, at dosage levels of 4-20 mg/kg, 20-100mg/kg, 100mg/kg, and 20-100 mg/kg, respectively; and chlorite-oxidized oxyamylose, polyriboinosinic-polyribocytidylic acid, and mouse interferon, administered 24 hr before viral challenge, as single doses of 100-500 mg/kg, 20mg/kg, and 10(7)-10(8) international reference units/kg respectively. Similar doses of polyriboinosinic-polyribocytidylic acid and mouse interferon administered after inoculation of virus did not alter the final mortality rate.
Effect of incision direction on radial keratotomy outcome (1991)

The goal of maximizing radial keratotomy results by using optical-zone-directed (centrally directed) incisions rather than limbus-directed (peripherally directed) incisions is evaluated in this prospective study. Five patients had bilateral radial keratotomy, with optical-zone-directed incisions in one eye and limbus-directed incisions in the other. The order of surgery and eye was randomly assigned. Patients were evaluated preoperatively, at one week, and at one month. There were no significant differences preoperatively between the two groups of eyes in spherical equivalent or keratometry. At one week postoperatively, however, there were significant group differences in spherical equivalent changes (P less than .010). Eyes with limbus-directed incisions were -2.2 diopters (D) myopic, on average, while eyes with optical-zone-directed incisions were near emmetropic, with a mean spherical equivalent of 0.10 D. Because of these results, we stopped randomizing cases at this point. The difference in surgical effect was still significant at three months (P less than .01); eyes with limbus-directed incisions had an average of 3.5 D less surgical effect than eyes with optical-zone-directed incisions.
Development of functional resins by modification of ion-exchange resins and their application to analytical chemistry (1987)

Abstract
Hole Mobility in Porphyrin- and Porphyrin-Fullerene Electropolymers (2012)

Charge transport within films of several new types of electropolymerized porphyrin and porphyrin-fullerene dyad polymers was studied in order to obtain information on the suitability of these organic semiconductors for applications in solar energy conversion, sensor devices, etc. The films, prepared by electropolymerization on a conductive substrate, were immersed in acetonitrile and studied using chronocoulometric and cyclic voltammetric electrochemical methods. The charge diffusion coefficients were found to be dependent upon the electrolytic medium. Electrolyte anion size plays a significant role in determining the rate of migration of charge through the polymers, demonstrating that migration of positive charge is accompanied by migration of negative counterions. Bulkier anions markedly decrease the charge diffusion coefficient. This strong dependence suggests that anion mobility is the rate-limiting process for diffusional charge transport within the porphyrin polymer films and that the largest rates obtained are lower limits to the intrinsic cation mobility. With electrolytes containing the relatively small perchlorate anion, charge diffusion coefficients of the porphyrin polymers were similar to those reported for polyaniline under acidic conditions. The charge diffusion coefficient for a zinc porphyrin polymer was found to decrease 2 orders of magnitude in the presence of pyridine, suggesting that metal-containing porphyrins polymer films may have sensor applications. Cation (hole) mobilities previously reported in the literature for porphyrin-containing polymers with chemical structures quite different from those investigated here were much smaller than those found for the polymers in this study, but further investigation suggests that the differences are due to choice of electrode size and material.
Bao: Learning to Steer Query Optimizers (2020)

Query optimization remains one of the most challenging problems in data management systems. Recent efforts to apply machine learning techniques to query optimization challenges have been promising, but have shown few practical gains due to substantive training overhead, inability to adapt to changes, and poor tail performance. Motivated by these difficulties and drawing upon a long history of research in multi-armed bandits, we introduce Bao (the BAndit Optimizer). Bao takes advantage of the wisdom built into existing query optimizers by providing per-query optimization hints. Bao combines modern tree convolutional neural networks with Thompson sampling, a decades-old and well-studied reinforcement learning algorithm. As a result, Bao automatically learns from its mistakes and adapts to changes in query workloads, data, and schema. Experimentally, we demonstrate that Bao can quickly (an order of magnitude faster than previous approaches) learn strategies that improve end-to-end query execution performance, including tail latency. In cloud environments, we show that Bao can offer both reduced costs and better performance compared with a sophisticated commercial system.
The Heavy Duty Geogrid Wall (1988)

The geogrid reinforced soil retaining wall was a key component in reconstructing a small hydroelectric plant situated at the center of Cascade Dam in Michigan. It was necessary that the road along the crest support a heavy crane as it brought in a new generator. The crest was widened and strengthened by building the reinforced soil wall on the side slope of the embankment. The geosynthetic reinforcement would provide a flexible face and allow for lateral displacement under temporary, very high surcharge loading. The wall was constructed in 1 ft layers, with the geogrid placed at each lift, backed by a slit film woven geotextile. Each lift was compacted with hand operated equipment. An extensive instrumentation program indicates that the wall performed well within anticipated limits. After nine months, the geogrid showed no apparent strength loss from construction damage, weather exposure or aging.
Calcium Oxide as a Solid Base Catalyst for Ecofriendly Production of Biodiesel (2007)

Much attention has been drawn to “Biodiesel” as a renewable liquid fuel, but the production using alkali hydroxide resolving in the reactant is always accompanied by environmentally malign effluents. This problem is evitable by using calcium oxide as the solid base catalyst. The strong basic property under the reacting condition of including a trace amount of moisture enhanced the catalytic activity for the chemical reaction to produce biodiesel. For preparing the practical catalyst, calcium oxide was anchored onto silica. The composite powder can be formed into macro-porous pellet by controlling the densification, which may further enhance the catalytic effectiveness factor.
Presence of Activated T-Cells With a T8+ M1+ Leu 7+ Surface Phenotype in Invaded Lymph Nodes From Patients With Solid Tumors23 (1986)

The lymphocyte surface phenotype of lymph nodes from patients with larynx or urinary bladder carcinoma was investigated by using a panel of monoclonal antibodies. The phenotype pattern of lymphocytes from lymph nodes invaded by malignant cells (as assessed by histopathology) was different from that of the cells from noninvaded or normal control nodes. Although the proportion of natural killer cells or macrophages was similar in the 3 groups of lymph nodes, invaded lymph nodes contained a higher proportion of T-cells and a lower B-cell percentage. Furthermore, cells from invaded nodes comprised 15-20% of T3+ T8+ cells that coexpressed the M1 marker and, to some extent, also the Leu 7 marker. A large proportion of cells with multiple markers were activated, as shown by the expression of Tac and HLA-DR antigens. In 2 patients activated T8+ cells expressing also M1 and Leu 7 markers infiltrated the tumor site. The presence of these activated cells both in involved nodes and tumor mass may indicate that they originate in response to cancer.
Gastrointestinal morphology and absorption of monosaccharides in fowls conditioned to different types and levels of dietary fibre (1992)

To test a possible influence of dietary fibre on intestinal sugar uptake, rates of absorption of 10 mM-D-[U-14C] glucose and 10 mM-D-[U-14C] xylose were measured in either jejunum or (distal) caecum, by in vivo lumen perfusion, in immature female fowls preconditioned to a standard diet containing (g/kg) either 0, 100, 200 or 400 added dried grass, 200 powdered cellulose, or 200 grass with a polysaccharidase enzyme supplement. When birds were killed after perfusion, dimensions of (unperfused) parts of their alimentary tracts were determined, and recoveries of 14C radioactivity in some body tissues were compared with measured activities absorbed. On average, absorption of glucose was 1.9 and 1.2 times faster than xylose in jejunum and caecum respectively, although these differences varied with dietary treatment and order of perfusion. Increasing grass in the diet caused significant changes in xylose absorption rate in both jejunum and caecum, but only when it was perfused before glucose. With any one sugar and intestinal segment, mean rates of absorption were correlated positively with corresponding mean rates of fluid loss from perfusate. Although their influence on sugar absorption was not well defined, the dietary fibre treatments had more pronounced effects on gross dimensions of parts of the alimentary tract and, hence, potentially on total rates of absorption. Compared with the basal diet, addition of 100, 200 or 400 g grass/kg or 200 g cellulose/kg caused significant increases in small intestine length while 200 g grass/kg with supplementary enzyme did not, and combined caecal length increased with the 400 g grass/kg and the supplementary enzyme treatments. Absorbed 14C activity was recovered in plasma after jejunal perfusions but not caecal ones, whereas it was recovered in liver and in the flushed perfused segment after both types of perfusion. Since there was overlap in absorption rates between jejunum and caecum, this result suggests that the liver may be able to distinguish and treat differently compounds absorbed in the two regions.
Urinary Clearance of Cranberry Flavonol Glycosides in Humans (2016)

Cranberry is reported to have health benefits, including prevention of urinary tract infections and other chronic diseases, due to the high content of polyphenols, including flavonols and flavan-3-ols. The aim of this study was to determine the clearance of flavonol glycosides and flavan-3-ols and/or their metabolites in human urine. Ten healthy women volunteers ingested 240 mL of cranberry juice containing flavonol glycosides. Urine samples were collected at 0, 90, 225, and 360 min postingestion. While flavan-3-ols were not detected, five flavonol glycosides common in cranberry were identified. Quercetin-3-galactoside, the most abundant cranberry flavonol, exhibited the highest peak urine concentration (C<sub>max</sub>) of 1315 pg/mg creatinine, followed by quercetin-3-rhamnoside, quercetin-3-arabinoside, myricetin-3-arabinoside, and myricetin-3-galactoside. Quercetin-3-arabinoside showed delayed clearance, C<sub>max</sub> at 237 min (T<sub>max</sub>), relative to other flavonols (90-151 min). Both aglycone and the conjugated sugar moiety structure mediate the flavonol's bioavailability. Interindividual variation for bioavailability and clearance is also apparent. Metabolites, e.g. glucoronides, were not detected.
Polycystin-1 Regulates Extracellular Signal-Regulated Kinase-Dependent Phosphorylation of Tuberin To Control Cell Size through mTOR and Its Downstream Effectors S6K and 4EBP1 (2009)

Autosomal dominant polycystic kidney disease (ADPKD) is a common genetic disease characterized by bilateral renal cyst formation. Both hyperproliferation and hypertrophy have been previously observed in ADPKD kidneys. Polycystin-1 (PC-1), a large orphan receptor encoded by the PKD1 gene and mutated in 85% of all cases, is able to inhibit proliferation and apoptosis. Here we show that overexpression of PC-1 in renal epithelial cells inhibits cell growth (size) in a cell cycle-independent manner due to the downregulation of mTOR, S6K1, and 4EBP1. Upregulation of the same pathway leads to increased cell size, as found in mouse embryonic fibroblasts derived from Pkd1-/- mice. We show that PC-1 controls the mTOR pathway in a Tsc2-dependent manner, by inhibiting the extracellular signal-regulated kinase (ERK)-mediated phosphorylation of tuberin in Ser664. We provide a detailed molecular mechanism by which PC-1 can inhibit the mTOR pathway and regulate cell size.
All-silicon bistable micromechanical fibre switches (1998)

A fibre optical 1 × 2 switch based on Si-micromechanics for singlemode fibres is presented. For bistable operation, the input fibre is switched and fixed in a V-groove clamp using thermal actuators. The power consumption during switching is 1.5 W for several 10 ms, the insertion loss achieved so far is 5 dB and the cross talk is below –60 dB.