gebhart/patrepeval huggingface dataset:
Untangling Peripheral Sympathetic Neurocircuits (2022)

The sympathetic nervous system plays a critical role in regulating many autonomic functions, including cardiac rhythm. The postganglionic neurons in the sympathetic chain ganglia are essential components that relay sympathetic signals to target tissues and disruption of their activity leads to poor health outcomes. Despite this importance, the neurocircuitry within sympathetic ganglia is poorly understood. Canonically, postganglionic sympathetic neurons are thought to simply be activated by monosynaptic inputs from preganglionic cholinergic neurons of the intermediolateral cell columns of the spinal cord. Early electrophysiological studies of sympathetic ganglia where the peripheral nerve trunks were electrically stimulated identified excitatory cholinergic synaptic events in addition to retrograde action potentials, leading some to speculate that excitatory collateral projections are present. However, this seemed unlikely since sympathetic postganglionic neurons were known to synthesize and release norepinephrine and expression of dual neurochemical phenotypes had not been well recognized. <i>In vitro</i> studies clearly established the capacity of cultured sympathetic neurons to express and release acetylcholine <i>and</i> norepinephrine throughout development and even in pathophysiological conditions. Given this insight, we believe that the canonical view of ganglionic transmission needs to be reevaluated and may provide a mechanistic understanding of autonomic imbalance in disease. Further studies likely will require genetic models manipulating neurochemical phenotypes within sympathetic ganglia to resolve the function of cholinergic collateral projections between postganglionic neurons. In this perspective article, we will discuss the evidence for collateral projections in sympathetic ganglia, determine if current laboratory techniques could address these questions, and discuss potential obstacles and caveats.
Benign Bilateral Testicular Enlargement (1974)

Detailed investigation was made of a pubertal patient with unusually large testes. No abnormality of adrenal or Leydig cell function was found. There was no evidence for autonomy of either pituitary or gonad. Testicular biopsy showed tubules of adult diameter with a paucity of mature germinal elements, spermatogonia with ballooned cytoplasm, and Sertoli cells with retracted apices. These findings suggest that this patient exhibits a previously unreported and apparently benign process affecting tubular development and giving rise to megatestes.
Introduction: Endoscopic endonasal skull base surgery (2014)

1Department of Neurosciences and Reproductive and Odonto­ stomatological Sciences, School of Medicine and Surgery, Universita degli Studi di Napoli Federico II, Naples, Italy; 2Departments of Neurological Surgery, Otolaryngology, and Neuroscience, Weill Cornell Medical College, NewYork­Presbyterian Hospital, New York, New York; 3Departments of Neu ro surgery and Pediatrics, University of Virginia, Charlottesville, Vir ginia; and 4Department of Neurosurgery, USC Pituitary Center, Los Angeles, California
Viscoelastic lyotropic liquid crystals formed in a bio-based trimeric surfactant system (2019)

Exploring the self-assembly of oligomeric surfactants is expected to bridge the gap between conventional and polymeric surfactants. Using the natural resource rosin as the starting material, a bio-based star-shaped trimeric quaternary ammonium surfactant (abbreviated tri-R-4-Phe) was synthesized. With three bulky dehydroabietic acid units in the hydrophobic group, tri-R-4-Phe has a molecular weight of 1684.9 and shows strong affinity towards both water and nonpolar organic compounds. In the presence of tri-R-4-Phe, C12EO3 was able to form lamellar lyotropic liquid crystals over a wide concentration range in water. The tri-R-4-Phe/C12EO3/water tertiary system was investigated by polarizing optical microscopy (POM), small angle X-ray scattering (SAXS) and rheological measurements. The investigated samples with different formulations all showed strong viscoelasticity, and the viscosity increased with the surfactant content. All samples showed interesting shear banding phenomena due to the shear induced mesoscale phase transition in tri-R-4-Phe/C12EO3/water systems. The present work reveals the unique behaviour of trimeric surfactant involved LLC systems and the result may be helpful in investigating delicate molecular self-assembly using natural resources.
Identification of a Two-Partner Secretion Locus of Enterotoxigenic Escherichia coli (2006)

Enterotoxigenic Escherichia coli (ETEC) remains a formidable cause of diarrheal illness worldwide. At present, there is no vaccine that provides broad-based protection against ETEC. A 'phoA-based self-cloning mutagenesis system, TnphoA.ts, employed to identify novel ETEC surface antigens, led to identification of an ETEC two-partner secretion locus (etpBAC) on the pCS1 virulence plasmid of prototype strain H10407. Cloning and expression of etpBAC in recombinant E. coli LMG194(pJY019) resulted in secretion of a high-molecular-weight (HMW) glycosylated exoprotein. This glycoprotein, EtpA, exhibits linear peptide sequence and predicted structural homologies with known HMW adhesins produced by other two-partner secretion loci. Antibodies directed against recombinant EtpA (anti-rEtpA.6H) recognized an HMW protein in culture supernatants of ETEC strains H10407 and LMG194(pJY019) but not in culture supernatant of strain H10407-P, which lacks the 92-kb pCS1 plasmid, or an isogenic etpA mutant. etpA mutants were deficient in adherence to intestinal epithelial cells in vitro, and anti-rEtpA.6H antibodies inhibited association of H10407 with target epithelial cells. Cloning and expression of etpB in recombinant E. coli were sufficient to confer adherence. Screening of multiple ETEC isolates for the etpBAC locus by colony hybridization and by EtpA immunoblotting suggested that EtpA is one of the most common antigens secreted by these pathogens. Together, these results indicate that the newly identified ETEC two-partner secretion locus directs the secretion of a high-molecular-weight glycosylated protein, EtpA, that in concert with the putative EtpB transporter participates in adherence of H10407 to epithelial cells, thereby expanding the repertoire of potential ETEC virulence proteins and vaccine candidates.
Learning Heuristics for the Superblock Instruction Scheduling Problem (2009)

Modern processors have multiple pipelined functional units and can issue more than one instruction per clock cycle. This places a burden on the compiler to schedule the instructions to take maximum advantage of the underlying hardware. Superblocks - a straight-line sequence of code with a single entry point and multiple possible exit points - are a commonly used scheduling region within compilers. Superblock scheduling is NP-complete, and is done suboptimally in production compilers using a greedy algorithm coupled with a heuristic. The heuristic is usually handcrafted, a potentially time-consuming process. In this paper, we show that supervised machine learning techniques can be used to semiautomate the construction of heuristics for superblock scheduling. In our approach, labeled training data were produced using an optimal superblock scheduler. A decision tree learning algorithm was then used to induce a heuristic from the training data. The automatically constructed decision tree heuristic was compared against the best previously proposed, handcrafted heuristics for superblock scheduling on the SPEC 2000 and MediaBench benchmark suites. On these benchmark suites, the decision tree heuristic reduced the number of superblocks that were not optimally scheduled by up to 38 percent, and led to improved performance on some architectural models and competitive performance on others.
Thioredoxin-Mimetic-Peptides Protect Cognitive Function after Mild Traumatic Brain Injury (mTBI) (2016)

Mild traumatic brain injury (mTBI) is recognized as a common injury among children, sportsmen, and elderly population. mTBI lacks visible objective structural brain damage but patients frequently suffer from long-lasting cognitive, behavioral and emotional difficulties associated with biochemical and cellular changes. Currently there is no effective treatment for patients with mTBI. The thioredoxin reductase/thioredoxin pathway (TrxR/Trx1) has both anti-inflammatory and anti-oxidative properties. If the system is compromised, Trx1 remains oxidized and triggers cell death via an ASK1-Trx1 signal transduction mechanism. We previously showed tri and tetra peptides which were derived from the canonical -CxxC-motif of the Trx1-active site, called thioredoxin mimetic (TXM) peptides, reversed inflammatory and oxidative stress damage mimicking Trx1 activity. Here, TXM-peptides were examined for protecting cognitive function following weight drop closed-head injury in a mouse model of mTBI. TXM-CB3 (AcCys-Pro-CysNH 2 ), TXM-CB13 (DY-70; AcCys-Met-Lys-CysNH 2 ) or AD4 (ACysNH 2 ) were administered at 50 mg/kg, 60 min after injury and cognitive performance was monitored by the novel-object-recognition and Y-maze tests. Behavioral deficits subsequent to mTBI injury were reversed by a single dose of TXM-CB3, TXM-CB13 and, to a lesser extent, by AD4. TXM-CB13 similar to TXM-CB3 and AD4 reversed oxidative stress-induced phosphorylation of mitogen-activated kinases, p38 MAPK and c-Jun N-terminal kinase, (JNK) in human neuronal SH-SY5Y cells. We conclude that significantly improved cognitive behavior post mTBI by the TXM-peptides could result from anti-apoptotic, and/or anti-inflammatory activities. Future preclinical studies are required to establish the TXM-peptides as potential therapeutic drugs for brain injuries.
Temperature Compensation of Oxygen Sensing Films Utilizing a Dynamic Dual Lifetime Calculation Technique (2014)

With advances to chemical sensing, methods for compensation of errors introduced by interfering analytes are needed. In this work, a dual lifetime calculation technique was developed to enable simultaneous monitoring of two luminescence decays. Utilizing a windowed time-domain luminescence approach, the response of two luminophores is separated temporally. The ability of the dual dynamic rapid lifetime determination (DDRLD) approach to determine the response of two luminophores simultaneously was investigated through mathematical modeling and experimental testing. Modeling results indicated that lifetime predictions will be most accurate when the ratio of the lifetimes from each luminophore is at least three and the ratio of intensities is near unity. <i>In vitro</i> experiments were performed using a porphyrin that is sensitive to both oxygen and temperature, combined with a temperature-sensitive inorganic phosphor used for compensation of the porphyrin response. In static experiments, the dual measurements were found to be highly accurate when compared to single-luminophore measurements-statistically equivalent for the long lifetime emission and an average difference of 2% for the short lifetimes. Real-time testing with dynamic windowing was successful in demonstrating dual lifetime measurements and temperature compensation of the oxygen sensitive dye. When comparing the actual oxygen and temperature values with predictions made using a dual calibration approach, an overall difference of less than 1% was obtained. Thus, this method enables rapid, accurate extraction of multiple lifetimes without requiring computationally intense curve fitting, providing a significant advancement toward multi-analyte sensing and imaging techniques.
Optical Computing: Some Hard Questions (1986)

Get PDF Email Share Share with Facebook Tweet This Post on reddit Share with LinkedIn Add to CiteULike Add to Mendeley Add to BibSonomy Get Citation Copy Citation Text H. JOHN CAULFIELD, "Optical Computing: Some Hard Questions," Optics News 12(4), 9-11 (1986) Export Citation BibTex Endnote (RIS) HTML Plain Text Citation alert Save article
Contrastive Value Learning: Implicit Models for Simple Offline RL (2022)

Model-based reinforcement learning (RL) methods are appealing in the offline setting because they allow an agent to reason about the consequences of actions without interacting with the environment. Prior methods learn a 1-step dynamics model, which predicts the next state given the current state and action. These models do not immediately tell the agent which actions to take, but must be integrated into a larger RL framework. Can we model the environment dynamics in a different way, such that the learned model does directly indicate the value of each action? In this paper, we propose Contrastive Value Learning (CVL), which learns an implicit, multi-step model of the environment dynamics. This model can be learned without access to reward functions, but nonetheless can be used to directly estimate the value of each action, without requiring any TD learning. Because this model represents the multi-step transitions implicitly, it avoids having to predict high-dimensional observations and thus scales to high-dimensional tasks. Our experiments demonstrate that CVL outperforms prior offline RL methods on complex continuous control benchmarks.
ORF7-encoded accessory protein 7a of feline infectious peritonitis virus as a counteragent against IFN-α-induced antiviral response (2013)

The type I IFN-mediated immune response is the first line of antiviral defence. Coronaviruses, like many other viruses, have evolved mechanisms to evade this innate response, ensuring their survival. Several coronavirus accessory genes play a central role in these pathways, but for feline coronaviruses this has never to our knowledge been studied. As it has been demonstrated previously that ORF7 is essential for efficient replication in vitro and virulence in vivo of feline infectious peritonitis virus (FIPV), the role of this ORF in the evasion of the IFN-α antiviral response was investigated. Deletion of ORF7 from FIPV strain 79-1146 (FIPV-Δ7) rendered the virus more susceptible to IFN-α treatment. Given that ORF7 encodes two proteins, 7a and 7b, it was further explored which of these proteins is active in this mechanism. Providing 7a protein in trans rescued the mutant FIPV-Δ7 from IFN sensitivity, which was not achieved by addition of 7b protein. Nevertheless, addition of protein 7a to FIPV-Δ3Δ7, a FIPV mutant deleted in both ORF3 and ORF7, could no longer increase the replication capacity of this mutant in the presence of IFN. These results indicate that FIPV 7a protein is a type I IFN antagonist and protects the virus from the antiviral state induced by IFN, but it needs the presence of ORF3-encoded proteins to exert its antagonistic function.
Determination of Manganese in Whole Blood by Cathodic Stripping Voltammetry with Indium Tin Oxide (2017)

Abstract Manganese (Mn) is a required trace metal in the body. In recent years however, it has garnered significant attention as a developmental neurotoxin in children with chronic exposure. It has been linked to complications such as memory loss with negatively associated IQ scores, attention deficit hyperactivity disorder (ADHD), and in extreme cases, the development of a Parkinson's disease analogue‐manganism. Cathodic stripping voltammetry (CSV) has proven to be a suitable method for electroanalytical determination of Mn. We have established Mn CSV using indium tin oxide (ITO) as the working electrode for the determination of Mn in bovine whole blood after an acid digestion. Reliable, accurate, and precise results were obtained, as only 9 % variation in the digested blood was observed. The CSV results were compared with graphite‐furnace atomic absorption spectroscopy (GF‐AAS) and inductively coupled plasma‐ mass spectrometry (ICP‐MS) and favorable agreement across the methods was observed. Due to ITO's excellent positive potential window and stability under harsh environments, this method could be applied to other oxide‐forming transition metals detectable by CSV.
mGluR6 Transcripts in Non-neuronal Tissues (2011)

To study mGluR6 expression, the authors investigated two transgenic mouse lines that express enhanced green fluorescent protein (GFP) under control of mGluR6 promoter. In retina, GFP was expressed exclusively in all ON bipolar cell types, either uniformly across all cells of this class (line 5) or in a mosaic (patchy) fashion (line 1). In brain, GFP was found in certain cortical areas, superior colliculus, axons of the corpus callosum, accessory olfactory bulb, and cells of the subcommissural organ. Outside the nervous system, GFP was seen in the corneal endothelium, testis, the kidney's medulla, collecting ducts and parietal layer that surround the glomeruli, and B lymphocytes. Furthermore, RT-PCR showed that most tissues that expressed GFP in the transgenic mouse also transcribed two splice variants of mGluR6 in the wild-type mouse. The alternate variant was lacking exon 8, predicting a protein product of 545 amino acids that lacks the 7-transmembrane domains of the receptor. In cornea, immunostaining for mGluR6 gave strong staining in the endothelium, and this was stronger in wild-type than in mGluR6-null mice. Furthermore, calcium imaging with Fura-2 showed that application of L-AP4, an agonist for group III metabotropic glutamate receptors including mGluR6, elevated calcium in endothelial cells.
Sex-based Association of CYP11B2 (-344 C/T) Polymorphism in Indian Type 2 Diabetic Patients (2015)

CYP11B2 gene association studies have been conducted extensively in subjects who suffer from hypertension and come from Caucasian, Asian
Exploratory studies on incineration of carbaryl waste (2009)

A hazardous waste stream, generated during the manufacture of carbaryl (1-naphthyl-n-methylcarbamate), an insecticide, was explored for assessing its suitability for incineration. The physico-chemical characteristics such as proximate analysis (moisture, volatile matter, fixed carbon and ash), ultimate analysis (carbon, hydrogen, nitrogen, sulphur and oxygen), calorific value and the heavy metal content of the waste indicated that carbaryl waste was suitable for incineration. The incineration experiments were conducted in a bench-scale (25 mm ID, 450 mm long) quartz reactor at various operating temperatures (800 to 1200 degrees C) at a fixed gas-phase residence time of two seconds. Results of the experiments showed that carbaryl waste could be effectively incinerated at a temperature of 1200 degrees C with a gas-phase residence time of two seconds. The destruction and removal efficiency (DE) at these operating conditions was > 99.99% for carbaryl, which was monitored as a principal organic hazardous compound (POHC). The ash generated at these operating conditions was subjected to the Toxicity Characteristic Leaching Procedure (TCLP) and was found to be non-toxic in nature.
Properties of ITO Films Deposited on Plastic Substrate by RF Superimposed DC Magnetron Sputtering Method (2007)

This DOI is not currently attached to any metadata records. DOIs can’t actually ever be deleted (they’re persistent), but sometimes our members create DOIs in error. We do have a process to approximate deletion which we follow only in rare cases where the DOI has been genuinely created in error, and most crucially, if the DOI has never been published anywhere online or in print and never otherwise distributed to or communicated with anyone (authors, readers, reviewers, etc.
Incidence of vertical phoria on postural control during binocular vision: what perspective for prevention to nonspecific chronic pain management? (2015)

Vertical heterophoria (VH) is the latent vertical misalignment of the eyes when the retinal images are dissociated, vertical orthophoria (VO) when there is no misalignment. Studies on postural control, during binocular vision in upright stance, reported that healthy subjects with small VH vs. VO are less stable, but the experimental cancellation of VH with an appropriate prism improves postural stability. The same behavior was recorded in nonspecific chronic back pain subjects, all with VH. It was hypothesized that, without refraction problems, VH indicates a perturbation of the somaesthetic cues required in the sensorimotor loops involved in postural control and the capacity of the CNS to optimally integrate these cues, suggesting prevention possibilities. Sensorimotor conflict can induce pain and modify sensory perception in some healthy subjects; some nonspecific pain or chronic pain could result from such prolonged conflict in which VH could be a sign, with new theoretical and clinical implications.
Remarkable effects of a pentafluorophenyl group on the stereoselective reactions of a chiral iron acyl complex (1988)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTRemarkable effects of a pentafluorophenyl group on the stereoselective reactions of a chiral iron acyl complexIwao. Ojima and Hyok Boong. KwonCite this: J. Am. Chem. Soc. 1988, 110, 17, 5617–5621Publication Date (Print):August 1, 1988Publication History Published online1 May 2002Published inissue 1 August 1988https://pubs.acs.org/doi/10.1021/ja00225a004https://doi.org/10.1021/ja00225a004research-articleACS PublicationsRequest reuse permissionsArticle Views198Altmetric-Citations37LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Designed α-sheet peptides suppress amyloid formation in Staphylococcus aureus biofilms (2017)

Nosocomial infections affect hundreds of millions of patients worldwide each year, and ~60% of these infections are associated with biofilm formation on an implanted medical device. Biofilms are dense communities of microorganisms in which cells associate with surfaces and each other using a self-produced extracellular matrix composed of proteins, polysaccharides, and genetic material. Proteins in the extracellular matrix take on a variety of forms, but here we focus on functional amyloid structures. Amyloids have long been associated with protein misfolding and neurodegenerative diseases, but recent research has demonstrated that numerous bacterial species utilize the amyloid fold to fortify the biofilm matrix and resist disassembly. Consequently, these functional amyloids, in particular the soluble oligomeric intermediates formed during amyloidogenesis, represent targets to destabilize the extracellular matrix and interrupt biofilm formation. Our previous studies suggested that these amyloidogenic intermediates adopt a non-standard structure, termed "α-sheet", as they aggregate into soluble oligomeric species. This led to the design of complementary α-sheet peptides as anti-α-sheet inhibitors; these designs inhibit amyloidogenesis in three unrelated mammalian disease-associated systems through preferential binding of soluble oligomers. Here we show that these anti-α-sheet peptides inhibit amyloid formation in <i>Staphylococcus aureus</i> biofilms. Furthermore, they inhibit aggregation of pure, synthetic phenol soluble modulin α1, a major component of <i>Staphylococcus aureus</i> functional amyloids. As it aggregates phenol soluble modulin α1 adopts α-helix then α-sheet and finally forms β-sheet fibrils. The binding of the designed peptide inhibitors coincides with the formation of α-sheet.