gebhart/patrepeval huggingface dataset:
Clinical outcomes for sirolimus‐eluting stent implantation and vascular brachytherapy for the treatment of in‐stent restenosis (2004)

The purpose of this study was to compare the mid-term clinical outcome of sirolimus-eluting stent (SES) implantation and vascular brachytherapy (VBT) for in-stent restenosis (ISR). We assessed the 9-month occurrence of major adverse cardiac events (MACE) in 44 consecutive patients with ISR treated with SES implantation and 43 consecutive patients treated with VBT in the period immediately prior. Baseline clinical and angiographic characteristics of the two groups were similar. During follow-up, three patients (7%) died in the VBT group and none in the SES group. The incidence of myocardial infarction was 2.3% in both groups. Target lesion revascularization was performed in 11.6% of the VBT patients and 16.3% of the SES patients (P = NS). The 9-month MACE-free survival was similar in both groups (79.1% VBT vs. 81.5% SES; P = 0.8 by log rank). The result of this nonrandomized study suggests that sirolimus-eluting stent implantation is at least as effective as vascular brachytherapy in the treatment of in-stent restenosis.
Magnetotransport fluctuations in regular semiconductor ballistic quantum dots (1996)

We present studies of the quantum-mechanical transport and the classical billiard transport through ballistic semiconductor quantum dots, where the transport is nonergodic or "regular." These are shown to have quite similar behavior if the classical motion is limited to a collimated set of trajectories. These results are shown to agree substantially with experiments performed on actual semiconductor quantum dots. The results suggest that transport in regular semiconductor quantum dots is clearly distinguished from the equivalent transport in ergodic dots. In particular, the fluctuation spectrum is not random, but highly oscillatory and correlated. The correlation functions for these fluctuations show regular and periodic oscillations that contain only a few, often harmonically related, frequencies. This is fully in keeping with the expectations of semiclassical descriptions of the fluctuations in the density of states of such structures.
VS1-5 How to Learn Transurethral Detaching Prostatectomy (TUDP) in Saline (2008)

Holmium laser enucleation of the prostate (HoLEP) is being performed more frequently as a transurethral treatment for benign prostatic hyperplasia, The surgical procedures can be divided into enucleation and morcellation, but unlike TUR-P, many studies have found that it takes 20 to 30 procedures to be proficient in HoLEP,
PAGE4 is a cytoplasmic protein that is expressed in normal prostate and in prostate cancers. (2002)

PAGE4 is an X chromosome-linked cancer-testis antigen that was identified by expressed sequence tags database mining and a functional genomic approach. PAGE4 is preferentially expressed in normal male and female reproductive tissues and also in a variety of cancers including prostate. In the present study, we have used in situ hybridization to show that PAGE4 mRNA is expressed only in the epithelial cells of normal and prostate-cancer specimens. Analysis of the protein product encoded by the PAGE4 mRNA reveals that it encodes a Mr 16,000 protein and is detected in tissue extracts from both normal prostate and prostate cancer. Cell fractionation analysis of PAGE4 protein indicates that PAGE4 is localized in the cytoplasm of the cell. Furthermore, cDNA microarray analysis indicates that the expression of lipoprotein lipase, a gene frequently deleted in prostate cancer, is down-regulated in a cell line that expresses PAGE4.
What is the optimum way to extract information from optical images at the standard quantum limit and beyond ? (2006)

The problem of extracting a given piece of information from an image with the maximum sensitivity is solved in the general case. Implementations using image intensity processing techniques and homodyne measurements are given.
Gradient Heating Effect Modulated by Hydrophobic/Hydrophilic Carbon Nanotube Network Structures for Ultrafast Solar Steam Generation (2021)

The emerging interface solar-thermal water evaporation has been widely studied to solve fresh water shortage because of its high solar-thermal conversion efficiency, environmental friendliness, and low cost. However, traditional water evaporation systems inevitably lose heat to the environment, which not only greatly affects the water evaporation rate but also hinders their practical applications. In this work, an interface solar-thermal water evaporation system with enhanced heat localization, which is combined by a hydrophobic carbon nanotube (CNT) film (heating layer) and hydrophilic polyvinyl alcohol (PVA)/CNT foam (evaporating layer), is demonstrated. Under solar irradiation, the temperature of the hydrophobic CNT film is higher than that of the hydrophilic PVA/CNT foam due to the differences in wettability, so the thermal energy in the CNT film can be continuously transferred to the PVA/CNT foam evaporator, forming a gradient heating effect and greatly increasing the water evaporation rate. As a result, the water evaporation rate can reach 4.2 kg m<sup>-2</sup> h<sup>-1</sup> under a solar illumination of 1 kW m<sup>-2</sup>, which is among the highest water evaporation rate levels. More importantly, this water evaporation system structure is simple, can be easily scaled up, and has gradient applicability to other photothermal materials, which provides a route to improve the interfacial solar steam evaporation rate.
Location of the interchain disulfide bonds of the fourth component of human complement (C4): evidence based on the liberation of fragments secondary to thiol-disulfide interchange reactions. (1986)

Treatment of human C4 with chemical denaturants and heat produces rapid, autolytic peptide bond cleavage of the alpha-chain. These alpha-chain fragments are linked to the parent C4 molecule through disulfide bonds. On more prolonged heating, however, there is liberation of several peptides, including the beta-chain, the gamma-chain, and a C-terminal alpha-chain fragment. This reaction is inhibited by iodoacetamide. By using a fluorescent thiol reagent and 14C-iodoacetamide, the thiol group present on each peptide was analyzed. The results suggest that the thiol residue exposed by cleavage of the thioester bond induces thiol-disulfide interchange reactions to liberate the peptides. Based on the identification of fragments liberated, the kinetics of their appearance, their sulfhydryl content, and the reported primary structure of human C4, a model of the interchain disulfide bonds is proposed in which the amino terminal portion of the alpha-chain is disulfide-linked to both the beta- and gamma-chains, whereas the carboxyl terminal portion of the alpha-chain is disulfide-linked to only the gamma-chain.
Front Cover: (C7H11N2)2MBr4 (M=Cu, Zn): X‐Ray Sensitive 0D Hybrid Metal Halides with Tunable Broadband Emission (Eur. J. Inorg. Chem. 10/2022) (2022)

The Front Cover shows a single crystal of a novel hybrid organic-inorganic halide material (DMAP)2ZnBr4. (DMAP)2ZnBr4 and its relative (DMAP)2CuBr4 feature a zero-dimensional (0D) pseudo-layered crystal structure with highly segregated molecular organic and inorganic layers. Solution-grown crystals of these compounds show significant response to soft 8 keV X-ray photons, suggesting a potential use as X-ray detectors. Furthermore, (DMAP)2ZnBr4 exhibits tunable-color photoluminescence, with emission colors varying from blue to green depending on excitation wavelength. More information can be found in the Research Article by B. Saparov and co-workers.
Temperature-dependent molecular motions of cholesterol esters: a carbon-13 nuclear magnetic resonance study (1982)

Carbon-13 NMR spectroscopy at 50.3 MHz has been used to study four long-chain cholesterol esters with a double bond in the omega-9 position: cholesteryl oleate, C18:1, omega-9; cholesteryl linoleate, C18:2, omega-6,9; cholesteryl erucate, C22:1, omega-9; cholesteryl nervonate, C24:1, omega-9. The linoleate and oleate esters exhibit two metastable liquid-crystalline phases (cholesteric and smectic), whereas the longer chain esters form a stable smectic phase but no cholesteric phase [Ginsburg, G. S., & Small, D. M. (1981) Biochim. Biophys. Acta 664, 98-107]. Line widths (nu 1/2), spin--lattice relaxation times (T1), and nuclear Overhauser enhancements (NOE) were measured for all well-resolved resonances from ring and fatty acyl (FA) carbons at different temperatures in the isotropic liquid of each ester. T1 and NOE values of FA resonances were constant between the FA-2 carbon and olefinic region of each acyl chain and increased markedly for carbons near the chain terminus. FA carbon motions are thus restricted and/or highly correlated in the region between the ring and the olefinic carbons, suggesting that strong interactions occur between cholesterol ester molecules in this region of the FA chain. These results also suggest that the FA chains are approximately extended in the isotropic liquid. Steroid ring methine C-6 and C-3 nu 1/2's increased differentially on cooling to the liquid leads to liquid crystal transition temperature (Tm) of each ester, indicative of increasingly anisotropic ring rotations. The rotational anisotropy was quantitated by using a prolate ellipsoid model for the cholesterol ester molecule for which two correlation times (corresponding to rotations about the long and short molecular axes) were calculated from the C-3 and C-6 nu 1/2 values. The C-3/C-6 nu 1/2 ratio was directly proportional to the anisotropy of the ring motions as measured by the ratio of the two correlation times. At any given temperature relative to Tm, the C-3 and C-6 nu 1/2's and the C-3/C-6 nu 1/2 ratios were larger for cholesterol esters which have a cholesteric phase than for esters which have no cholesteric phase, showing that steroid ring motions were more restricted and more anisotropic prior to the formation of a cholesteric phase. Cholesteryl erucate and cholesteryl nervonate have longer regions of FA chain interactions which result in greater chain cooperativity, apparently preventing the preordering of steroid rings to the degree necessary for formation of a cholesteric phase. Thus, these esters form the smectic phase directly from the isotropic liquid. These results are applied to the cholesterol ester transition in plasma low-density lipoproteins.
Ecosystem carbon storage does not vary with mean annual temperature in Hawaiian tropical montane wet forests (2014)

Theory and experiment agree that climate warming will increase carbon fluxes between terrestrial ecosystems and the atmosphere. The effect of this increased exchange on terrestrial carbon storage is less predictable, with important implications for potential feedbacks to the climate system. We quantified how increased mean annual temperature (MAT) affects ecosystem carbon storage in above- and belowground live biomass and detritus across a well-constrained 5.2 °C MAT gradient in tropical montane wet forests on the Island of Hawaii. This gradient does not systematically vary in biotic or abiotic factors other than MAT (i.e. dominant vegetation, substrate type and age, soil water balance, and disturbance history), allowing us to isolate the impact of MAT on ecosystem carbon storage. Live biomass carbon did not vary predictably as a function of MAT, while detrital carbon declined by ~14 Mg of carbon ha(-1) for each 1 °C rise in temperature - a trend driven entirely by coarse woody debris and litter. The largest detrital pool, soil organic carbon, was the most stable with MAT and averaged 48% of total ecosystem carbon across the MAT gradient. Total ecosystem carbon did not vary significantly with MAT, and the distribution of ecosystem carbon between live biomass and detritus remained relatively constant across the MAT gradient at ~44% and ~56%, respectively. These findings suggest that in the absence of alterations to precipitation or disturbance regimes, the size and distribution of carbon pools in tropical montane wet forests will be less sensitive to rising MAT than predicted by ecosystem models. This article also provides needed detail on how individual carbon pools and ecosystem-level carbon storage will respond to future warming.
Biochemical characterization of domain-specific glycoproteins of the rat hepatocyte plasma membrane. (1985)

Seven integral proteins (CE 9, HA 21, HA 116, HA 16, HA 4, HA 201, and HA 301) were isolated from rat hepatocyte plasma membranes by immunoaffinity chromatography on monoclonal antibody-Sepharose. Six of the proteins (all but HA 16) exhibit domain-specific localizations (either bile canalicular or sinusoidal/lateral) about the hepatocyte surface. We identified three of these protein antigens as leucine aminopeptidase (HA 201), dipeptidyl peptidase IV (HA 301), and the asialoglycoprotein receptor (HA 116). We also developed 125I-lectin blotting procedures that, when used in conjunction with chemical and glycosidase treatments, permitted a comparison of the types of oligosaccharides present on the seven proteins. All seven are sialoglycoproteins, based upon the effects of prior neuraminidase and periodate-aniline-cyanoborohydride treatments of blots on labeling by 125I-wheat germ agglutinin. 125I-labeled Ricinus communis agglutinin I and 125I-peanut agglutinin blotting of the desialylated proteins revealed few if any conventional O-linked oligosaccharides, suggesting that the sialyl residues represent termini of N-linked complex-type oligosaccharides. Depending upon the protein, we estimated the presence of 2-26 N-linked oligosaccharides/polypeptide chain from the Mr reductions accompanying chemical or enzymatic deglycosylation. Three of these mature plasma membrane proteins (HA 21, HA 116, and HA 4) have both high mannose-type and complex-type oligosaccharides on every copy of their polypeptide chains. The labeling of these three proteins by 125I-concanavalin A was sensitive to treatment with endoglycosidase H, and each exhibited a quantitative reduction in Mr after the treatment, as assessed independently by 125I-wheat germ agglutinin blotting. At this level of analysis, we were unable to discern differences in the types of oligosaccharides present on these seven glycoproteins that correlate with their patterns of expression within the plasma membrane domains of this polarized epithelial cell.
Motorized fractional flow reserve pullback: Accuracy and reproducibility (2020)

A motorized FFR pullback was accurate to assess the distribution of epicardial resistance in patients with intermediate coronary artery disease. The reproducibility of the FFR pullback was high. Further studies are required to determine the potential usefulness of a hyperemic FFR pullback strategy for decision making and treatment planning.
Development of US national laser damage standard: 2020 status (2020)

This paper gives the annual report on the progress of developing a US National Standard. Effort in this past year has been on derivation of test details [1] and an initial test plan to validate the test. This initial test is a major lesson learned in the development of the ISO standard tests, namely it will allow for the experimental validation of key assumptions in the test procedure. Among these key assumptions to be validated are that the exposure sequence is properly described by a Poisson sequence and the role of spot size on counting rate accuracy. Our results and the impact of these results on the test procedure will be given. The next steps in the development of the standard will be discussed.
Détection et exaltation de la luminescence de molécules biologiques individuelles en solution (2002)

La Spectroscopie de Correlation de Fluorescence (FCS) est une technique d'analyse statistique des fluctuations de luminescence produites par des molecules fluorescentes diffusant librement dans un volume de collection de quelque μm 3 . Une limitation fondamentale de la technique provient de l'ouverture numerique limitee des systemes optiques conventionnels qui ne collectent qu'une faible partie des photons emis. Nous presentons des resultats relatifs a l'augmentation du nombre de photons collectes en utilisant le concept du controle de l'emission spontanee par des structures photoniques de type miroir dielectrique.
Verapamil Increases the Bactericidal Activity of Bedaquiline against Mycobacterium tuberculosis in a Mouse Model (2014)

Bedaquiline is a newly approved drug for the treatment of multidrug-resistant tuberculosis, but there are concerns about its safety in humans. We found that the coadministration of verapamil with subinhibitory doses of bedaquiline gave the same bactericidal effect in mice as did the full human bioequivalent bedaquiline dosing. Adding verapamil to bedaquiline monotherapy also protected against the development of resistant mutants in vivo. The adjunctive use of verapamil may permit use of lower doses of bedaquiline to be used and thereby reduce its dose-related toxicities in tuberculosis patients.
Biocompatibility assessment of up-and down-converting nanoparticles: implications of interferences with in vitro assays (2018)

The safety assessment of nanoparticles (NPs) is crucial during their design and development for biomedicine. One of the prerequisite steps during this evaluation is in vitro testing that employs cell-based assays not always validated and well-adapted for NPs. Interferences with in vitro assays may arise due to the nano-related optical, oxidative, fluorescent, surface and catalytic properties of NPs. Thus, proper validation of each assay system has to be performed for each NP type. This study aimed to evaluate the applicability of the most common in vitro cytotoxicity assays for the safety assessment of up- and down-converting lanthanide-doped NPs. Conventional cell viability tests and fluorescence-based assays for oxidative stress response were selected to determine the biological effects of up- and down-converting NPs to human brain cells. Comparison with known silver and iron oxide NPs was made for verification purposes. Both the plate reader and flow cytometric measurements were examined. The obtained results indicated that both types of Ln-doped NPs interfered to a much lesser extent than metallic NPs. In addition, the great potential of both up- and down-converting NPs for biomedicine was manifested due to their biocompatibility and low toxicity.
Evaluation and control of device damage in high density plasma etching (1994)

The effects of polysilicon etch plasma conditions on metal–oxide–semiconductor (MOS) capacitor breakdown and n-channel MOS transistor (NMOS) performance have been investigated. A high density electron cyclotron resonance (ECR) plasma source with multipolar magnetic confinement was integrated into a full NMOS process flow. The polysilicon etch plasma process parameters for designed experiments were microwave power, overetch time, rf bias, and plasma radial uniformity. MOS capacitor leakage currents increase with longer polysilicon edge lengths on gate oxide, higher ion density, and higher ion energy during the polysilicon overetch step. Lower NMOS transistor transconductance and higher threshold voltages correlate with longer overetch times and high microwave power and rf bias during the overetch step. Device performance degradation increases with decreasing channel length, and the exposure of the source and drain oxide edges to a high density flux is thought to be the main cause for observed degradation. A high rate, selective, and low damage polysilicon etch process can be obtained using a high density (≳1011 cm−3) and moderate ion energy (&amp;lt;30 eV) ECR discharge, with moderate power and zero applied rf bias during the overetch step.
Identification and characterization of a novel extracellular matrix protein nephronectin that is associated with integrin α8β1 in the embryonic kidney (2001)

The epithelial-mesenchymal interactions required for kidney organogenesis are disrupted in mice lacking the integrin alpha8beta1. None of this integrin's known ligands, however, appears to account for this phenotype. To identify a more relevant ligand, a soluble integrin alpha8beta1 heterodimer fused to alkaline phosphatase (AP) has been used to probe blots and cDNA libraries. In newborn mouse kidney extracts, alpha8beta1-AP detects a novel ligand of 70-90 kD. This protein, named nephronectin, is an extracellular matrix protein with five EGF-like repeats, a mucin region containing a RGD sequence, and a COOH-terminal MAM domain. Integrin alpha8beta1 and several additional RGD-binding integrins bind nephronectin. Nephronectin mRNA is expressed in the ureteric bud epithelium, whereas alpha8beta1 is expressed in the metanephric mesenchyme. Nephronectin is localized in the extracellular matrix in the same distribution as the ligand detected by alpha8beta1-AP and forms a complex with alpha8beta1 in vivo. Thus, these results strongly suggest that nephronectin is a relevant ligand mediating alpha8beta1 function in the kidney. Nephronectin is expressed at numerous sites outside the kidney, so it may also have wider roles in development. The approaches used here should be generally useful for characterizing the interactions of novel extracellular matrix proteins identified through genomic sequencing projects.
A monoclonal antibody directed against the catalytic site of Bacillus anthracis adenylyl cyclase identifies a novel mammalian brain catalytic subunit (1992)

A brain adenylyl cyclase was shown to contain an epitope closely related to that specified by a conserved sequence containing a nucleotide-binding consensus sequence GXXXXGKS and located in the catalytic sites of bacterial, calmodulin-dependent adenylyl cyclases [Goyard, S., Orlando, C., Sabatier, J.-M., Labruyere, E., d'Alayer, J., Fontan, G., van Rietschoten, J., Mock, M., Danchin, A., Ullmann, A., & Monneron, A. (1989) Biochemistry 28, 1964-1967]. A monoclonal antibody, mab 164, produced against a peptide corresponding to this conserved sequence specifically inhibited the Bordetella pertussis adenylyl cyclase. It also specifically inhibited rat and rabbit brain synaptosomal adenylyl cyclases. The extent of inhibition depended upon the type of enzyme purification, reaching 90% for the calmodulin-sensitive species of enzyme and 20-35% for the forskolin-agarose-retained species. The extent of inhibition in a given fraction also depended upon the effector present. mab 164 reacted on Western blots of forskolin-agarose-retained fractions with a 175-kDa component and did not recognize the Gs alpha stimulatory subunit. Consequently, the 175-kDa protein was considered as a good candidate for an adenylyl cyclase catalyst. The adenylyl cyclase activity contained in forskolin-agarose-retained fractions was further purified on calmodulin-Sepharose. On Western blots of such fractions, mab 164 reacted with a 140-kDa protein, a component that appeared to derive from the 175-kDa protein enriched in the previous step. The kcat of this 140-kDa presumptive adenylyl cyclase was estimated to be of the order of 600 s-1.(ABSTRACT TRUNCATED AT 250 WORDS)