gebhart/patrepeval huggingface dataset:
Computerized fault tree construction for a train braking system (1997)

A new approach for fault tree automation is proposed which is a hybrid of the digraph and decision table methods, using the best features of both. The new method is based on the flexibility of the decision table method but incorporates a way of detecting, classifying and analysing control loops, similar to the use of operators in the digraph approach. As well as using operators to deal with control loops, a new operator is introduced that deals with electrical circuits. This means that when constructing the fault trees, difficulties of handling repeated events are eliminated and the size of the fault trees is significantly reduced. The method has been tested by its application to a braking system on a train. © 1997 John Wiley & Sons, Ltd.
Comparison of uptake, oxidation and lipid distribution of 17-iodoheptadecanoic acid, 15-(p-iodophenyl)pentadecanoic acid and 15-(p-iodophenyl)-3,3-dimethylpentadecanoic acid in normal canine myocardium. (1993)

The kinetics of 17-[123I]iodoheptadecanoic acid (IHDA), 15-(p-[125I]iodophenyl)pentadecanoic acid (pIPPA) and 15-(p-[131I]iodophenyl)-3,3-dimethylpentadecanoic acid (DMIPPA) were investigated in normal canine myocardium. After simultaneous intravenous injection, myocardial biopsy specimens and samples of arterial blood were taken over 80 min. IHDA showed the highest myocardial uptake (995 +/- 248 dpm/mg.mCi versus pIPPA: 785 +/- 197 dpm/mg.mCi, ns) and the largest size of oxidation (74% +/- 4% versus pIPPA: 65% +/- 5%, p < 0.05). Myocardial activity of IHDA decreased with a half-time value of 11.2 min (pIPPA: 13.2 min). Phospholipids were the main lipid fraction into which IHDA was incorporated, whereas pIPPA was predominantly incorporated into triacylglycerols. DMIPPA myocardial activity remained constant during the assay period and instead of being oxidized, DMIPPA was mainly incorporated into triacylglycerols (55% +/- 12%). The myocardium-to-blood ratios of DMIPPA were greater than 10:1. The ratios at peak for IHDA and pIPPA were 4.1:1 and 3.9:1, respectively (both p < 0.0001 versus DMIPPA). In conclusion, differences have been found in the myocardial uptake, oxidation and lipid distribution of IHDA, pIPPA and DMIPPA. DMIPPA is a promising tracer for fatty acid uptake studies with single-photon emission computerized tomography because of its prolonged retention and high myocardium-to-blood ratios.
A systematic approach to identify critical yield sensitive parametric parameters (2002)

Identifying and eliminating yield limiting factors is a critical requirement for achieving accelerated yield improvement rates. This paper presents a systematic methodology for identifying parametric yield sensitive parameters in a semiconductor process. The method decomposes the product yield into two major components: a non-random systematic yield Y/sub s/ and a random yield Y/sub r/. The systematic yield Y/sub s/ and all ET (Electrical Test) parameters are then used for the statistical correlation analysis. It divides data into groups and calculates statistics for all ET (Electrical Test) parameters. The critical yield sensitive parameters are identified based on the results of the correlation analysis and the analysis of the statistical significance of the data groups. Applications of the proposed analysis method to many manufacturing lines' data have been very successful in identifying and quantifying parametric yield sensitivity.
A new type of corona-discharge photoionization source for gas lasers (1984)

We present results of an experimental study aimed at characterizing a new type of corona-discharge photon source, which is particularly suitable to be used as preionizer in transversely excited gas lasers operating at high pulse repetition frequencies. Results of comparative tests carried out in CO2 laser gas mixtures between this photoionization source and a conventional bare spark source are also reported, showing the superiority of the proposed scheme.
Rotavirus Stability and Inactivation (1979)

SUMMARY The stability of the infectivity of Simian rotavirus, SA11, has been analysed and compared to the stability of reovirus type 1. SA11 infectivity was stable to freeze-thawing, sonication, incubation at 25 °C overnight or at 37 °C for 1 h and to treatment with acid, ether, chloroform and Genetron. In contrast to reovirus, the infectivity of SA11 was more rapidly inactivated by heating at 50 °C. SA11 infectivity was inactivated above pH 10.0 and by heating at 50 °C in 2 m-MgCl2, but was stabilized by heating in 2 m-MgSO4; reovirus 1 infectivity was enhanced by heating in MgCl2. Both SA11 and reovirus 1 were inactivated by freezing in MgCl2. These results show that rotaviruses and reoviruses can be distinguished by their patterns of inactivation by physical and chemical agents.
Efficacy of Adjuvant Chemotherapy in High-Risk Node-Negative Breast Cancer (1989)

We randomly assigned 536 women who had undergone either a modified radical mastectomy or a total mastectomy with low axillary-node dissection for potentially curable breast carcinoma to receive adjuvant chemotherapy or no-treatment observation. The patients were considered at high risk for recurrence because they had either an estrogen-receptor-negative tumor of any size or an estrogen-receptor-positive tumor at least 3 cm in diameter with no histopathological evidence of axillary-node involvement. The chemotherapy consisted of six four-week cycles of cyclophosphamide (100 mg per square meter of body-surface area orally on days 1 through 14), methotrexate (40 mg per square meter intravenously on days 1 and 8), fluorouracil (600 mg per square meter intravenously on days 1 and 8), and prednisone (40 mg per square meter orally on days 1 through 14). Treatments were balanced with respect to patients' characteristics. The analysis included 406 eligible patients who were entered in the study before October 1, 1987. The overall disease-free survival among patients treated with the four-drug regimen was 84 percent, as compared with 69 percent for the control group, at a median follow-up of three years (P = 0.0001). A treatment benefit was also observed in premenopausal and postmenopausal patients as well as in patients with estrogen-receptor-positive or with estrogen-receptor-negative tumors. Severe or life-threatening hematologic toxicity was encountered in 33 percent of the treated patients, with one death. Our results indicate that adjuvant chemotherapy with six cycles of cyclophosphamide, methotrexate, fluorouracil, and prednisone is effective in improving three-year disease-free survival among high-risk patients with axillary-node-negative, operable breast cancer. An analysis of the effect of treatment on survival awaits a longer follow-up.
Operative choledochoscopy in common bile duct surgery. (1985)

Surgical exploration of the common bile duct for gallstones is a common operation but carries a high residual stone rate. Conventional techniques for exploring the bile ducts are blind procedures. The surgeon cannot see what he is doing. Also there has been no reliable method for a postexploratory check of the bile ducts before closure, usually around a T-tube. Operative choledochoscopy allows the surgeon to see stones in the duct, may aid the removal of stones and provides visual postexploratory checks that the common bile duct and the hepatic ducts are clear, that papilla is patent and that no stone is left behind before closure. A personal series of 150 patients had operative choledochoscopy using a flexible fibreoptic choledochoscope. If there was a clear indication on preoperative investigations that the ducts should be explored, an operative cholangiogram was omitted and the choledochoscope used as the exploring instrument. In 127 patients with a diagnosis of gallstone disease, choledochoscopy was used at the primary operation. In 12 patients choledochoscopy was used at a secondary operation for recurrent gallstone disease, and 11 patients had malignant obstruction of the biliary tract. In 70 of the 127 patients, gallstones were found and extracted using the choledochoscope. In 53 patients the ducts were clear, and in 4, other lesions were found: 3 papillomas and one polycystic disease. One hundred and six of the patients had the common bile duct closed primarily with no T-tube drainage. There was no increase in complications and no deaths associated with choledochoscopy or primary closure of the common bile duct. There was one case of recurrent stone in the common bile duct presenting six years later. This is a failure rate of 1.4 omicron (O amongst the 70 patients in whom stones were found. Choledochoscopy reduces the incidence of residual common bile duct stone.
Partitioning Model for Competitive Host−Guest Complexation in ESI-MS (2005)

Mathematical models based on equilibrium partitioning theory were developed to relate ion abundances produced by electrospray ionization mass spectrometry with solution concentrations of complexes resulting from competitive host-guest binding. Through modeling the possible equilibria in the electrospray droplets, including the partitioning between the droplet surface and interior that dictate what ions are generated by an electrospray, the factors responsible for distorting the distribution of ions from their solution concentrations were evaluated. Experiments with crown ether-alkali metal complexes confirm the validity of the models and yield a greater understanding of the behavior of host-guest complexes in ESI-MS, allowing for more accurate and less trouble-prone measurements of solution binding interactions.
Motion monitoring for cranial frameless stereotactic radiosurgery using video‐based three‐dimensional optical surface imaging (2011)

The OSI system is capable of detecting 0.1 +/- 0.1 mm 1D spatial displacement of a phantom in near real time and useful in head-motion monitoring. This new frameless SRS procedure using the mask-less head-fixation system provides immobilization similar to that of conventional frame-based SRS. Head-motion monitoring using near-real-time surface imaging provides adequate accuracy and is necessary for frameless SRS in case of unexpected head motion that exceeds a set tolerance.
Detection of malaria in Malaysia by nested polymerase chain reaction amplification of dried blood spots on filter papers (1996)

A modified nested polymerase chain reaction (PCR) method for detection of Plasmodium falciparum, P. vivax and P. malariae was combined with a simple blood collection and deoxyribonucleic acid (DNA) extraction method and evaluated in Malaysia. Finger-prick blood samples from 46 hospital patients and 120 individuals living in malaria endemic areas were spotted on filter papers and dried. The simple Chelex method was used to prepare DNA templates for the nested PCR assay. Higher malaria prevalence rates for both clinical (78.2%) and field samples (30.8%) were obtained with the nested PCR method than by microscopy (76.1% and 27.5%, respectively). Nested PCR was more sensitive than microscopy in detecting mixed P. falciparum and P. vivax infections, detected 5 more malaria samples than microscopy on the first round of microscopical examination, and detected malaria in 3 microscopically negative samples. Nested PCR failed to detect parasite DNA in 2 microscopically positive samples, an overall sensitivity of 97.4% compared to microscopy. The nested PCR method, when coupled with simple dried blood spot sampling, is a useful tool for collecting accurate malaria epidemiological data, particularly in remote regions of the world.
Developing nitrosocarborane chemistry (2016)

The new nitrosocarboranes [1-NO-2-R-1,2-closo-C2B10H10] [R = CH2Cl (1), CH3OCH2 (2) p-MeC6H4 (3), SiMe3 (4) and SiMe2tBu (5)] and [1-NO-7-Ph-1,7-closo-C2B10H10] (6) were synthesised by reaction of the appropriate lithiocarborane in diethyl ether with NOCl in petroleum ether followed by quenching the reaction with aqueous NaHCO3. These bright-blue compounds were characterised spectroscopically and, in several cases, crystallographically including structural determinations of 2 and 6 using crystals grown in situ on the diffractometer from liquid samples. In all cases the nitroso group bonds to the carborane as a 1e substituent (bent C–N–O sequence) and has little or no influence on <δ11B>, the weighted average 11B chemical shift, relative to that in the parent (monosubstituted) carborane. Mono- and dinitroso derivatives of 1,1′-bis(m-carborane), compounds 7 and 8 respectively, were similarly synthesised but attempts to prepare the mononitroso 1,1′-bis(o-carborane) by the same protocol led only to the hydroxylamine species [1-(1′-1′,2′-closo-C2B10H11)-2-N(H)OH-1,2-closo-C2B10H10] (9); the desired compound [1-(1′-1′,2′-closo-C2B10H11)-2-NO-1,2-closo-C2B10H10] (10) was only realised by switching to a non-aqueous work-up. The involvement of water in effecting the net reduction of the NO function in 10 to N(H)OH in 9 was confirmed by a series of experiments involving [1-N(H)OH-2-Ph-1,2-closo-C2B10H10] (11), [1-(1′-2′-D-1′,2′-closo-C2B10H10)-2-D-1,2-closo-C2B10H10] (12) and [1-(1′-2′-D-1′,2′-closo-C2B10H10)-2-N(H)OH-1,2-closo-C2B10H10] (13). It is suggested that during aqueous work-up a water molecule, H-bonded to the acidic C2′H of 10, is "delivered" to the adjacent C2NO unit. The ability of the NO group in nitrosocarboranes to undergo Diels-Alder cycloaddition reactions with cyclic 1,3-dienes was established via the syntheses of [1-(NOC10H14)-1,2-closo-C2B10H11] (14) and [1-(NOC6H8)-2-Ph-1,2-closo-C2B10H10] (15). This strategy was then utilised to prepare derivatives of the elusive dinitroso compounds of [1,2-closo-C2B10H12] and 1,1′-bis(o-carborane) leading to the sterically-crowded products [1,2-(NOC6H8)2-1,2-closo-C2B10H10] (16, prepared as meso and racemic diastereoisomers), [1-{1′-2′-(NOC6H8)-1′,2′-closo-C2B10H10}-2-(NOC6H8)-1,2-closo-C2B10H10] (17) and [1-(1′-1′,2′-closo-C2B10H11)-2-(NOC6H8)-1,2-closo-C2B10H10] (18).
The Role of Growth Factors and Cytokines in the Tumorigenesis and Immunobiology of Malignant Mesothelioma (1995)

Malignant mesothelioma (MM) is an asbestos-associated cancer that is increasing in incidence worldwide and is refractory to conventional therapy. MM cells are potent sources of a number of cytokines, some of which have recently been shown to be directly involved in the aggressive growth and spread of MM tumors. Emerging data also suggest involvement of MM-derived cytokines in systemic paraneoplastic syndromes including immunosuppression, thrombocytosis, cachexia, amyloidosis, and hypoglycemia. Additional characterization of the expression of cytokines and cytokine receptors in situ in MM tumors may provide a more complete picture of the autocrine and paracrine processes which occur in MM. Improved therapy of MM, particularly cytokine-based approaches, is likely to benefit from further elucidation of the patterns and regulation of cytokine expression associated with MM tumors.
Irradiation Testing of High-Power-Density Vibropacked Annular Fuel (2007)

This paper describes an irradiation test of high-power-density internally and externally cooled annular fuel samples in the 5-MW Massachusetts Institute of Technology (MIT) research reactor MITR-II. The design of the irradiation facility is briefly reviewed, with an emphasis on the thermal-hydraulic behavior of the irradiation capsules. The irradiation test is described, including the thermal history of the two irradiated samples. A discussion of the observed asymmetrical temperature profiles is provided. Results of preliminary postirradiation examination consisting of collimated gamma scans of the irradiation capsules to confirm burnup estimates and estimate fission gas release (FGR) are also presented. It is concluded that the vibropacked fuel samples’ FGR is below 1%, and that is within the predictable range by a specially equipped FRAPCON model.
The NICE-SUGAR (Normoglycaemia in Intensive Care Evaluation and Survival Using Glucose Algorithm Regulation) Study: statistical analysis plan (2009)

We have developed a pre-determined statistical analysis plan for the NICE-SUGAR Study. This plan will be followed to avoid analysis bias arising from prior knowledge of the study findings.
Cellular drug action profile paradigm applied to XK469 (2002)

The cellular paradigm presented here defines the cellular action profile of new anticancer agents that complements our discovery and development paradigm. The main elements of this profile include a concentration clonogenicity response relationship on proliferating and plateau phase cells, flow cytometry studies assessing progression delay and apoptosis, macromolecular synthesis inhibition, and DNA damage assessment by the comet assay; other specific assessments then derive from these findings such as topoisomerase assays. XK469 is a new anticancer agent derived from the herbicide Assure that is the inactive parent compound of a family of quinoxaline analogs found to have anticancer activity in vivo. We have applied the described cellular action profile paradigm to XK469 to define a novel action at the cellular level. XK469 is a G2M phase-specific, antiproliferative agent whose activity is related to the 7-position of the chlorine ion in the benzene ring and expressed through a unique cellular action profile resulting in the irreversible increase in cyclin B1 (possibly by specific inhibition of its ubiquitination) and leading, in the absence of apoptosis, to the final mitotic arrest of HCT-116 cells in prophase with subsequent loss of clonogenicity.
Robots that Learn to Communicate: A Developmental Approach to Personally and Physically Situated Human-Robot Conversations (2010)

This paper summarizes the online machine learning method LCore, which enables robots to learn to communicate with users from scratch through verbal and behavioral interaction in the physical world. LCore combines speech, visual, and tactile information obtained through the interaction, and enables robots to learn beliefs regarding speech units, words, the concepts of objects, motions, grammar, and pragmatic and communicative capabilities. The overall belief system is represented by a dynamic graphical model in an integrated way. Experimental results show that through a small, practical number of learning episodes with a user, the robot was eventually able to understand even fragmental and ambiguous utterances, respond to them with confirmation questions and/or actions, generate directive utterances, and answer questions, appropriately for the given situation. This paper discusses the importance of a developmental approach to realize personally and physically situated human-robot conversations.
The Transmembrane Domain of the Alzheimer's β-Secretase (BACE1) Determines Its Late Golgi Localization and Access to β-Amyloid Precursor Protein (APP) Substrate (2001)

Release of Abeta peptides from beta-amyloid precursor protein (APP) requires sequential cleavage by two endopeptidases, beta- and gamma-secretases. beta-Secretase was recently identified as a novel membrane-bound aspartyl protease, named BACE1, Asp2, or memapsin 2. Employing confocal microscopy and subcellular fractionation, we have found that BACE1 is largely situated in the distal Golgi membrane with a minor presence in the endoplasmic reticulum, endosomes, and plasma membrane in human neuroblastoma SHEP cells and in mouse Neuro-2a cell lines expressing either endogenous mouse BACE1 or additional exogenous human BACE1. The major cellular beta-secretase activity is located in the late Golgi apparatus, consistent with its cellular localization. Furthermore, we demonstrate that the single transmembrane domain of BACE1 alone determines the retention of BACE1 to the Golgi compartments, through examination of recombinant proteins of various BACE1 fragments fused to a reporter green fluorescence protein. In addition, we show that the transmembrane domain of BACE1 is required for the access of BACE1 enzymatic activity to the cellular APP substrate and hence for the optimal generation of the C-terminal fragment of APP (CTF99). The results suggest a molecular and cell biological mechanism for the regulation of beta-secretase activity in vivo.
Different Cross-Reactivities of IgM Responses in Dengue, Zika and Tick-Borne Encephalitis Virus Infections (2021)

Flaviviruses circulate worldwide and cause a number of medically relevant human diseases, such as dengue, Zika, yellow fever, and tick-borne encephalitis (TBE). Serology plays an important role in the diagnosis of flavivirus infections, but can be impeded by antigenic cross-reactivities among flaviviruses. Therefore, serological diagnosis of a recent infection can be insufficiently specific, especially in areas where flaviviruses co-circulate and/or vaccination coverage against certain flaviviruses is high. In this study, we developed a new IgM assay format, which is well suited for the specific diagnosis of TBE, Zika and dengue virus infections. In the case of TBE and Zika, the IgM response proved to be highly specific for the infecting virus. In contrast, primary dengue virus infections induced substantial amounts of cross-reactive IgM antibodies, which is most likely explained by structural peculiarities of dengue virus particles. Despite the presence of cross-reactive IgM, the standardized nature and the quantitative read-out of the assay even allowed the serotype-specific diagnosis of recent dengue virus infections in most instances.
Nonviral and Viral Gene Transfer Into Different Subsets of Human Dendritic Cells Yield Comparable Efficiency of Transfection (2002)

Among the many promising cancer immunotherapeutic strategies, dendritic cells (DC) have become of particular interest. This study aims to optimize a clinical grade protocol for culture and transfection of human DC. Monocytes and CD34(+) hematopoietic stem cells (HSC) from same donor were differentiated under serum-free conditions and analyzed for their susceptibility to several recently described nonviral transfection methods as compared with established virally mediated gene transfer. Nonviral gene transfer methods studied were square-wave electroporation, lipofection, and particle-mediated transfer of plasmid DNA or in vitro transcribed mRNA. We conclude that DNA is not suitable for transduction of DC using nonviral methods. In contrast, mRNA and square-wave electroporation reproducibly yields 60% and 50% transfected monocyte- and CD34(+)-derived DC, respectively, measured at protein level, without affecting the cell viability. Thus, the transfection efficiency of this method is comparable with the 40-90% transgene expression obtained using retroviral (RV) or adenoviral (AdV) vectors in CD34(+)- and monocyte-derived DC, respectively. In monocyte-derived DC, however, the amount of protein expressed per-cell basis was higher after AdV (MOI = 1000) compared with mRNA electroporation-mediated transfer. This is the first study directly demonstrating side-by-side that mRNA electroporation into DC of different origin indeed results in a comparable number of transduced cells as when using virus-mediated gene transfer.
Induction of Immunological Tolerance by Oral Anti-CD3 (2011)

In recent years, our knowledge about immunoregulation and autoimmunity has significantly advanced, but nontoxic and more effective treatments for different inflammatory and autoimmune diseases are still lacking. Oral tolerance is of unique immunologic importance because it is a continuous natural immunologic event driven by exogenous antigen and is an attractive approach for treatment of these conditions. Parenteral administration of anti-CD3 monoclonal antibody is an approved therapy for transplantation in humans and is effective in autoimmune diabetes. Orally administered anti-CD3 monoclonal antibody is biologically active in the gut and suppresses experimental models of autoimmune diseases. Orally delivered antibody does not have side effects including cytokine release syndromes, thus oral anti-CD3 antibody is clinically applicable for chronic therapy. Here we review findings that identify a novel and powerful immunologic approach that is widely applicable for the treatment of human autoimmune conditions.