gebhart/patrepeval huggingface dataset:
Enhanced Vadose Zone Nitrogen Removal by Poplar During Dormancy (2015)

A pilot-scale, engineered poplar tree vadose zone system was utilized to determine effluent nitrate (NO3(-)) and ammonium concentrations resulting from intermittent dosing of a synthetic wastewater onto sandy soils at 4.5°C. The synthetic wastewater replicated that of an industrial food processor that irrigates onto sandy soils even during dormancy which can leave groundwater vulnerable to NO3(-) contamination. Data from a 21-day experiment was used to assess various Hydrus model parameterizations that simulated the impact of dormant roots. Bromide tracer data indicated that roots impacted the hydraulic properties of the packed sand by increasing effective dispersion, water content and residence time. The simulated effluent NO3(-) concentration on day 21 was 1.2 mg-N L(-1) in the rooted treatments compared to a measured value of 1.0 ± 0.72 mg-N L(-1). For the non-rooted treatment, the simulated NO3(-) concentration was 4.7 mg-N L(-1) compared to 5.1 ± 3.5 mg-N L(-1) measured on day 21. The model predicted a substantial "root benefit" toward protecting groundwater through increased denitrification in rooted treatments during a 21-day simulation with 8% of dosed nitrogen converted to N2 compared to 3.3% converted in the non-rooted test cells. Simulations at the 90-day timescale provided similar results, indicating increased denitrification in rooted treatments.
Delineation of human thymocyte differentiation pathways utilizing double-staining techniques with monoclonal antibodies. (1981)

Three new techniques have been introduced for the phenotypic analysis of human thymocytes and T cells. Monoclonal antibodies of different subclasses (i.e. IgG1 and IgG2) were used in various combinations and labelled with subclass-specific second layers conjugated to different fluorochromes. Tissue sections were studied with combinations of monoclonal and conventional reagents, and anti-mouse Ig-coated macrobead columns were used to separate antibody-tagged cells. With the help of these simple techniques, four stage of thymocyte differentiation (prothymocyte, cortical, intermediate and medullary cell types) can be described in detail and the microanatomical relation of T cell subsets with other cell types studied.
Experimental Study on the Effect of Injection Parameters on Proppant Transport in Rough Vertical Hydraulic Fractures (2018)

Abstract The understanding of proppant flow through fractures is critical in evaluating the hydraulic fracturing performance. As a continuation of our experimental efforts devoted to understanding how proppant flows in rough vertical fractures, in this paper, we examine the effect of injection parameters on the proppant transport in rough vertical fractures. The effects of polymer concentration, injection rate, proppant concentration, and type of proppant were investigated in detail. Experimental results show that a sufficiently high polymer concentration is needed to enable effective proppant flow in rough fractures. In general, the relative coverage of proppants increased dramatically as the polymer concentration increased, implying that the higher viscosity of fracturing fluid could enhance the slurry's ability to place more proppant vertically into the fracture and help to maintain a better conductivity after fracturing treatment. A sufficiently high injection rate of the slurry is also needed to enable effective proppant flow in rough fractures. At certain low injection rate, the proppants carried by a low polymer solution might not exhibit a tree-like settling pattern, diminishing the effect of roughness effect on the proppant transport. This means that even in rough fractures, the tree-like settling pattern of the proppants did not necessarily occur for sure; the injection rate should be properly selected to enable such phenomenon. With other condition being kept constant, a higher proppant loading led to a higher final relative coverage of the proppants in the rough fractures. But if the injection rate used for delivering the proppants is not sufficiently high, we may encounter injectivity issues; in our lab experiments, this caused the choking of the pump. The heavier proppant (ceramic proppants) in the rough fracture models tended to suppress the tree-like settling pattern that was experienced by the lighter proppant (silica sands). This is attributed to the larger density of the ceramic proppants, leading to a larger settling velocity. In order to maximize the spreading of a given proppant over a rough fracture model, we should determine the proper values of all the essential injection parameters (including polymer solution, injection rate, proppant concentration) by striking a good balance among them. The conclusions obtained in this study shed light on how to optimize slurry injection parameters to achieve an optimal proppant-filling ratio during hydraulic fracturing.
Complex Role of Fibrinogen A α-Chain in Fibrin Crosslinking and Gel Formation (1975)

The Aα-chain of fibrinogen has several important functions. Its NH2-terminus is the primary proteolytic site for thrombin and most coagulant enzymes. The fragile COOH-terminus, highly susceptible to plasmin proteolysis, renders fibrinogen heterogeneous in plasma. Another important role of the COOH-terminal region is in providing the primary sites of crosslinking of the α-chains of fibrin by factor XIHa, which makes the covalently crosslinked network resistant to proteolysis and increases the elastic modulus of the gel. Degradation of isolated α-polymer and α-chain monomer with cyanogen bromide (CNBr) lias revealed α- single peptide of molecular weight 2,400 which is involved in crosslinking. A core CNBr fragment of approximate m.w. 30,000 is not involved. No other peptide fragments have been detected which participate in α-chain crosslinking. Treatment of fibrinogen at low concentrations with thrombin and small amounts of plasmin results in gels which transiently develop much higher elasticity than in the absence of plasmin. Fibrinogenolysis proceeds to first give proteolysis near the CCOH-termmus of Aα-chains. Assuming that this is true also of fibrinolysis, we see that either splitting of a peptide bond near the COOH-terminus of α-chain or formation of additional isopeptide bonds in this region, may strengthen the structure of fibrin gel. Supported by Grants HL 14228 and HL 06350 from the National Institutes of Health, U.S.A.
Relationship of prevalence of non‐insulin‐dependent diabetes mellitus to Amerindian admixture in the Mexican Americans of San Antonio, Texas (1986)

A genetic and epidemiological survey of non-insulin-dependent diabetes mellitus (NIDDM) was conducted among the Mexican Americans residing in three socioeconomically distinct areas of San Antonio, Texas: a low socioeconomic (SES) traditional area (barrio), a middle SES, ethnically balanced area (transitional), and a high SES, predominantly Anglo area (suburb). Seventeen polymorphic markers were used to relate the prevalences of NIDDM with the extent of Amerindian ancestry of 1,237 Mexican Americans of these three residential areas. While only the RH and haptoglobin loci showed evidence of association with NIDDM, an admixture analysis of the combined allele frequency data revealed a pattern of decreasing NIDDM prevalence with increasing socioeconomic status (as approximated by neighborhood of residence) and a parallel decrease in Amerindian ancestry. The rank-order correlation between NIDDM prevalence and Amerindian admixture is 0.943 (P less than .001) for the crude prevalence rate and 0.829 (P less than .02) for the age-adjusted rate. Nested gene diversity analysis revealed that the heterogeneity of allele frequencies is more pronounced when individuals were classified by their NIDDM disease status as compared to the classification by neighborhood. Estimation of Amerindian ancestry of each individual did not reveal any significant change in the shape of the distributions of individual admixture proportions in diabetics as compared to the controls. Nevertheless, the results suggest that genetic factors partially explain the differences in NIDDM prevalence observed between the Mexican American and Anglo populations in the southwestern United States.
Malignant Pleural Mesothelioma (2012)

Mesothelioma is a rare cancer that is estimated to occur in approximately 2500 people in the United States every year. These NCCN Clinical Practice Guidelines in Oncology (NCCN Guidelines) focus on malignant pleural mesothelioma (MPM), which is the most common type; mesothelioma can also occur in other sites (e.g., peritoneum, pericardium, tunica vaginalis testis). The disease is difficult to treat;
Chronotype and Social Jetlag: A (Self-) Critical Review (2019)

The Munich ChronoType Questionnaire (MCTQ) has now been available for more than 15 years and its original publication has been cited 1240 times (Google Scholar, May 2019). Additionally, its online version, which was available until July 2017, produced almost 300,000 entries from all over the world (MCTQ database). The MCTQ has gone through several versions, has been translated into 13 languages, and has been validated against other more objective measures of daily timing in several independent studies. Besides being used as a method to correlate circadian features of human biology with other factors-ranging from health issues to geographical factors-the MCTQ gave rise to the quantification of old wisdoms, like "teenagers are late", and has produced new concepts, like social jetlag. Some like the MCTQ's simplicity and some view it critically. Therefore, it is time to present a self-critical view on the MCTQ, to address some misunderstandings, and give some definitions of the MCTQ-derived chronotype and the concept of social jetlag.
Design of a high‐Q H0 photonic crystal nanocavity for cavity QED (2010)

Abstract High‐ Q design for a zero‐cell photonic crystal nanocavity with a small mode volume is demonstrated and the aptitude for cavity QED experiments is investigated. The optimization of displacements of hexagonal‐lattice air holes in the Γ‐M direction, in addition to the Γ‐K direction, results in a cavity quality factor Q of 2.8 × 10 5 sustaining the small modal volume of 0.23( λ 0 / n ) 3 . This high‐ Q cavity design is applicable to Si and GaAs semiconductor materials. We define a figure of merit of cavities representing spectral clarity of polariton doublet for cavity QED experiments and show the proposed H0 cavity's advantage over an L3 type cavity used so far. (© 2011 WILEY‐VCH Verlag GmbH &amp; Co. KGaA, Weinheim)
Adjustable compensation of polarization mode dispersion using a high-birefringence nonlinearly chirped fiber Bragg grating (1999)

We demonstrate an adjustable polarization-mode-dispersion (PMD) compensator. The device uses a nonlinearly chirped fiber Bragg grating written into a high-birefringence photosensitive fiber. By mechanically stretching the grating, the device generates a time delay between different polarizations that is adjustable from 100 to 320 ps and is tunable over 2.3 nm. We demonstrate tunable PMD compensation of a 10-Gb/s signal that has an initial delay between the two polarization states of 127 or 302 ps.
ChemInform Abstract: An Efficient Method for the Preparation of Chiral Synthons Starting from Racemic Compounds by Way of Asymmetric Synthesis. (1992)

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
Role of Noncoding RNAs in the Pathogenesis of Abdominal Aortic Aneurysm (2019)

Abdominal aortic aneurysm (AAA) is a local dilatation of the abdominal aortic vessel wall and is among the most challenging cardiovascular diseases as without urgent surgical intervention, ruptured AAA has a mortality rate of >80%. Most patients present acutely after aneurysm rupture or dissection from a previously asymptomatic condition and are managed by either surgery or endovascular repair. Patients usually are old and have other concurrent diseases and conditions, such as diabetes mellitus, obesity, and hypercholesterolemia making surgical intervention more difficult. Collectively, these issues have driven the search for alternative methods of diagnosing, monitoring, and treating AAA using therapeutics and less invasive approaches. Noncoding RNAs-short noncoding RNAs (microRNAs) and long-noncoding RNAs-are emerging as new fundamental regulators of gene expression. Researchers and clinicians are aiming at targeting these microRNAs and long noncoding RNAs and exploit their potential as clinical biomarkers and new therapeutic targets for AAAs. While the role of miRNAs in AAA is established, studies on long-noncoding RNAs are only beginning to emerge, suggesting their important yet unexplored role in vascular physiology and disease. Here, we review the role of noncoding RNAs and their target genes focusing on their role in AAA. We also discuss the animal models used for mechanistic understanding of AAA. Furthermore, we discuss the potential role of microRNAs and long noncoding RNAs as clinical biomarkers and therapeutics.
Stent deployment with distal vascular protection for the culprit vein graft stenosis in a patient with an acute infarct and cardiogenic shock (2002)

A case of emergency stent deployment to a critical vein graft lesion in a patient with an acute myocardial infarction and cardiogenic shock is described. An Angioguard vascular protection device was used, retrieving a large amount of atheromatous debris. Use of filter-type protection devices to prevent distal atheroembolism may be lifesaving in such patients.
Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo (2014)

Morphogenesis occurs in 3D space over time and is guided by coordinated gene expression programs. Here we use postembryonic development in Arabidopsis plants to investigate the genetic control of growth. We demonstrate that gene expression driving the production of the growth-stimulating hormone gibberellic acid and downstream growth factors is first induced within the radicle tip of the embryo. The center of cell expansion is, however, spatially displaced from the center of gene expression. Because the rapidly growing cells have very different geometry from that of those at the tip, we hypothesized that mechanical factors may contribute to this growth displacement. To this end we developed 3D finite-element method models of growing custom-designed digital embryos at cellular resolution. We used this framework to conceptualize how cell size, shape, and topology influence tissue growth and to explore the interplay of geometrical and genetic inputs into growth distribution. Our simulations showed that mechanical constraints are sufficient to explain the disconnect between the experimentally observed spatiotemporal patterns of gene expression and early postembryonic growth. The center of cell expansion is the position where genetic and mechanical facilitators of growth converge. We have thus uncovered a mechanism whereby 3D cellular geometry helps direct where genetically specified growth takes place.
β‐Adrenoceptor stimulation and neutrophil accumulation in mouse airways (2004)

This study characterised the effect of beta-adrenoceptor stimulation on endotoxin-induced accumulation of neutrophilic granulocytes in mouse airways, where the cytokines interleukin (IL)-6 and macrophage inflammatory protein (MIP)-2 are involed as mediators. The beta2-adrenoceptor agonist salbutamol (0.025-250 fMol) was administered intranasally in mice 24 h prior to administration of endotoxin (10 microg) intranasally. Bronchoalveolar lavage (BAL) fluid and venous blood, respectively, was harvested (6 or 24 h) after administration of endotoxin. Salbutamol substantially decreased the number of neutrophils in BAL fluid from endotoxin-exposed (6 and 24 h) mice and this effect was dose dependent (24 h). Pretreatment with the beta-adrenoceptor antagonist propranolol attenuated the inhibitory effect of salbutamol on BAL neutrophils (6 and 24 h), an attenuation that was not due to any unspecific effect of propranolol. Salbutamol also substantially decreased IL-6, but not MIP-2 in BAL fluid (6 h). In contrast to BAL fluid, salbutamol caused a moderate increase in blood neutrophils (24 h). In conclusion, as indicated in mouse airways in vivo, beta-adrenoceptor stimulation prior to endotoxin exposure inhibits the induced accumulation of neutrophils at a time point much later than that anticipated from its bronchodilatory effect. Even though the detailed molecular mechanisms behind this sustained "anti-inflammatory" effect remain unknown, it seems likely that this effect is in part due to a decrease in the local concentration of interleukin-6.
Conversions de fréquence ultra large bande par mélange à quatre ondes intermodal en cascade dans les fibres multimodes (2017)

International audience
Goblet cell fine structure (1966)

Abstract Although the role of the goblet cell in mucous secretion has been known since 1837, the actual process by which mucous is formed by the cell still is open to question. There is a known proliferation of the Golgi membranes during the early formation of mucous within peripheral Golgi vacuoles. However, there also is a concomitant proliferation of rough‐surfaced endoplasmic reticulum which contains an electron dense material within the lamellae. It is suggested that the endoplasmic reticulum synthesizes a protein moiety which is transported to the Golgi apparatus. There the protein is combined with acid mucopolysaccharides and glycoproteins, that are synthesized by the Golgi apparatus, to form the mucous droplets visible in the electron microscope. Examination of intestinal goblet cells of man, rat, and guinea pig, after stimulation of the cells to evacuate their mucous, also reveals a basic fine structure that clearly is distinguishable from the fine structure of columnar absorbing cells.
Shear Strengthening of Reinforced Concrete Beam with High-Performance Fiber-Reinforced Cementitious Composite Jacketing (2014)

The possibility of using thin high-performance jackets aimed at improving the structural and shear capacity of existing reinforced concrete members is investigated in this paper. The jackets are made of high-performance fiber-reinforced concrete, with a steel mesh fabric sometimes added (diameter of the wires = 2 mm [0.078 in.]; wire spacing = 25.4 mm [1 in.]; and ultimate strength of steel = 550 N/mm2 [79.8 ksi]). Two different high-performance cementitious composites are investigated: a self-leveling concrete suitable for casting thin members, and a thixotropic concrete requiring no molds during casting operations. To assess the effectiveness of the proposed solutions, different jackets were used to reinforce short, simply supported reinforced concrete beams (2.85 m [9.35 ft] long) lacking stirrups. The beams were tested up to failure in four-point bending, and the numerous test results, including a close comparison with the reference un-strengthened beam, are presented and discussed. The experimental results demonstrate the effectiveness of the technique proposed. All strengthened beams reached their theoretical bending capacity, whereas the unreinforced beam failed in shear.
Intracranial Implantation with Subsequent 3D <em>In Vivo</em> Bioluminescent Imaging of Murine Gliomas (2011)

The mouse glioma 261 (GL261) is recognized as an in vivo model system that recapitulates many of the features of human glioblastoma multiforme (GBM). The cell line was originally induced by intracranial injection of 3-methyl-cholantrene into a C57BL/6 syngeneic mouse strain (1); therefore, immunologically competent C57BL/6 mice can be used. While we use GL261, the following protocol can be used for the implantation and monitoring of any intracranial mouse tumor model. GL261 cells were engineered to stably express firefly luciferase (GL261-luc). We also created the brighter GL261-luc2 cell line by stable transfection of the luc2 gene expressed from the CMV promoter. C57BL/6-cBrd/cBrd/Cr mice (albino variant of C57BL/6) from the National Cancer Institute, Frederick, MD were used to eliminate the light attenuation caused by black skin and fur. With the use of albino C57BL/6 mice; in vivo imaging using the IVIS Spectrum in vivo imaging system is possible from the day of implantation (Caliper Life Sciences, Hopkinton, MA). The GL261-luc and GL261-luc2 cell lines showed the same in vivo behavior as the parental GL261 cells. Some of the shared histological features present in human GBMs and this mouse model include: tumor necrosis, pseudopalisades, neovascularization, invasion, hypercellularity, and inflammation (1). Prior to implantation animals were anesthetized by an intraperitoneal injection of ketamine (50 mg/kg), xylazine (5 mg/kg) and buprenorphine (0.05 mg/kg), placed in a stereotactic apparatus and an incision was made with a scalpel over the cranial midline. A burrhole was made 0.1 mm posterior to the bregma and 2.3mm to the right of the midline. A needle was inserted to a depth of 3mm and withdrawn 0.4 mm to a depth of 2.6 mm. Two μl of GL261-luc or GL261-luc2 cells (10(7) cells/ml) were infused over the course of 3 minutes. The burrhole was closed with bonewax and the incision was sutured. Following stereotactic implantation the bioluminescent cells are detectable from the day of implantation and the tumor can be analyzed using the 3D image reconstruction feature of the IVIS Spectrum instrument. Animals receive a subcutaneous injection of 150 μg luciferin /kg body weight 20 min prior to imaging. Tumor burden is quantified using mean tumor bioluminescence over time. Tumor-bearing mice were observed daily to assess morbidity and were euthanized when one or more of the following symptoms are present: lethargy, failure to ambulate, hunched posture, failure to groom, anorexia resulting in >10% loss of weight. Tumors were evident in all of the animals on necropsy.
Induction of Ethylene Biosynthesis in Nicotiana tabacum by a Trichoderma viride Xylanase Is Correlated to the Accumulation of 1-Aminocyclopropane-1-Carboxylic Acid (ACC) Synthase and ACC Oxidase Transcripts (1994)

Xylanase (EIX) from the fungus Trichoderma viride elicits ethylene biosynthesis in leaf tissues of Nicotiana tabacum cv Xanthi but not in cv Hicks. The increase in ethylene biosynthesis is accompanied by an accumulation of 1-aminocyclopropane-1-carboxylic acid (ACC), an increase in extractable ACC synthase activity, and increases in ACC synthase and ACC oxidase transcripts. Priming of increases in ACC synthase and ACC oxidase transcripts. Priming of leaves with ethylene (120 microL/L, 14 h) sensitizes the tissue, resulting in an enhanced response to EIX and increases in both the in vivo ACC oxidase activity and ACC oxidase transcript level. EIX and ethylene independently induce ACC oxidase. Inhibition of ethylene biosynthesis by aminoethoxyvinylglycine is not accompanied by a reduction in ACC oxidase transcript level, indicating that ethylene biosynthesis is not required. In contrast to the differential induction of ethylene biosynthesis by EIX in Xanthi versus Hicks cultivars, both cultivars respond to a chemical stress (induced by CuSO4) by enhancing ethylene production. This induction is accompanied by an increase in ACC synthase transcript but not in that of ACC oxidase.