gebhart/patrepeval huggingface dataset:
Driving Mechanisms of Ionic Polymer Actuators Having Electric Double Layer Capacitor Structures (2012)

Two solid polymer electrolytes, composed of a polyether-segmented polyurethaneurea (PEUU) and either a lithium salt (lithium bis(trifluoromethanesulfonyl)amide: Li[NTf2]) or a nonvolatile ionic liquid (1-ethyl-3-methylimidazolium bis(trifluoromethanesulfonyl)amide: [C2mim][NTf2]), were prepared in order to utilize them as ionic polymer actuators. These salts were preferentially dissolved in the polyether phases. The ionic transport mechanism of the polyethers was discussed in terms of the diffusion coefficients and ionic transference numbers of the incorporated ions, which were estimated by means of pulsed-field gradient spin-echo (PGSE) NMR. There was a distinct difference in the ionic transport properties of each polymer electrolyte owing to the difference in the magnitude of interactions between the cations and the polyether. The anionic diffusion coefficient was much faster than that of the cation in the polyether/Li[NTf2] electrolyte, whereas the cation diffused faster than the anion in the polyether/[C2mim][NTf2] electrolyte. Ionic polymer actuators, which have a solid-state electric-double-layer-capacitor (EDLC) structure, were prepared using these polymer electrolyte membranes and ubiquitous carbon materials such as activated carbon and acetylene black. On the basis of the difference in the motional direction of each actuator against applied voltages, a simple model of the actuation mechanisms was proposed by taking the difference in ionic transport properties into consideration. This model discriminated the behavior of the actuators in terms of the products of transference numbers and ionic volumes. The experimentally observed behavior of the actuators was successfully explained by this model.
Matrix-associated heparan sulfate proteoglycan: core protein-specific monoclonal antibodies decorate the pericellular matrix of connective tissue cells and the stromal side of basement membranes. (1989)

Cultured human lung fibroblasts produce a large, nonhydrophobic heparan sulfate proteoglycan that accumulates in the extracellular matrix of the monolayer (Heremans, A., J. J. Cassiman, H. Van den Berghe, and G. David. 1988. J. Biol. Chem. 263: 4731-4739). A panel of four monoclonal antibodies, specific for four distinct epitopes on the 400-kD core protein of this extracellular matrix heparan sulfate proteoglycan, detects similar proteoglycans in human epithelial cell cultures. Immunohistochemistry of human tissues with the monoclonal antibodies reveals that these proteoglycans are concentrated at cell-matrix interfaces. Immunogold labeling of ultracryosections of human skin indicates that the proteoglycan epitopes are nonhomogeneously distributed over the width of the basement membrane. Immunochemical investigations and amino acid sequence analysis indicate that the proteoglycan from the fibroblast matrix shares several structural features with the large, low density heparan sulfate proteoglycan isolated from the Engelbreth-Holm-Swarm sarcoma. Thus, both epithelial cell sheets and individual mesenchymal cells accumulate a large heparan sulfate proteoglycan(s) at the interface with the interstitial matrix, where the proteoglycan may adopt a specific topological orientation with respect to this matrix.
The design of browsing and berrypicking techniques for the online search interface (1989)

First, a new model of searching in online and other information systems, called ‘berrypicking’, is discussed. This model, it is argued, is much closer to the real behavior of information searchers than the traditional model of information retrieval is, and, consequently, will guide our thinking better in the design of effective interfaces. Second, the research literature of manual information seeking behavior is drawn on for suggestions of capabilities that users might like to have in online systems. Third, based on the new model and the research on information seeking, suggestions are made for how new search capabilities could be incorporated into the design of search interfaces. Particular attention is given to the nature and types of browsing that can be facilitated.
Nucleotide sequence and fine structural analysis of the Corynebacterium glutamicum hom‐thrB operon (1988)

The complete nucleotide sequence of the Corynebacterium glutamicum hom-thrB operon has been determined and the structural genes and promoter region mapped. A polypeptide of Mr 46,136 is encoded by hom and a polypeptide of Mr 32,618 is encoded by thrB. Both predicted protein sequences show amino acid sequence homology to their counterparts in Escherichia coli and Bacillus subtilis. The promoter region has been mapped by S1-nuclease and deletion analysis. Located between -88, RNA start site and -219 (smallest deletion clone with complete activity) are sequence elements similar to those found in E. coli and B. subtilis promoters. Although there are no obvious attenuator-like structures in the 5'-untranslated region, there is a dyad-symmetry element, which may act as an operator.
Ring‐opening homo- and copolymerization of lactones. Part 1. Homo- and copolymerization of racemic β-butyrolactone with ɛ-caprolactone and δ-valerolactone by tetraisobutyldialuminoxane (TIBAO) catalyst (1998)

Copolymers of racemic β-butyrolactone (β-BL) with ε-caprolactone (ε-CL) (P(BL-co-CL)) and δ-valerolactone (δ-VL) (P(BL-co-VL)) were prepared by ring-opening polymerization reactions using the commercial aluminoxane catalyst tetraisobutyldialuminoxane (TIBAO). The yields, molecular weights, compositions and crystallinities were determined for both copolymers by gel permeation chromatography (GPC), nuclear magnetic resonance (1H NMR) spectroscopy and differential scanning calorimetry (DSC). A detailed study by 13C NMR spectroscopy has been made to determine monomer diad sequence distributions. These results and those of reactivity ratios indicate that the co-polymers may consist of compatible blocks of BL units and VL units of variable size. © 1998 SCI.
Demonstration of poly-N-acetyl lactosamine residues in ameboid and ramified microglial cells in rat brain by tomato lectin binding. (1994)

This study was designed to demonstrate the localization of poly-N-acetyl lactosamine residues in postnatal and adult rat brain, visualized by their specific binding to a lectin obtained from Lycopersicon esculentum (tomato). Lectin histochemistry was carried out on cryostat, paraffin, and vibratome sections and was examined by light microscopy. Selected vibratome sections were processed for electron microscopy. Our results showed that tomato lectin histochemistry was found in relation to blood vessels and glial cells in both postnatal and adult rat brain. Since tomato lectin-positive glial cells did not show GFAP immunoreactivity and displayed the same morphological features and overall distribution as nucleoside diphosphatase (NDPase)-positive cells, they were consequently identified as microglial cells. At the electron microscopic level, both ameboid and ramified microglial cells displayed intracytoplasmic and plasma membrane lectin reactivity. In postnatal brain, ameboid microglial cells always showed stronger binding of tomato lectin compared with ramified microglial cells in the adult brain. The putative significance of this decrease in poly-N-acetyl lactosamine from ameboid to ramified microglial cells and the possible role(s) of this sugar residue are discussed.
IgE isotype suppression in anti-epsilon-treated mice. (1982)

Two groups of CBA/J mice received a total of eight intraperitoneal (i.p.) injections of heavy-chain-specific rabbit anti-IgE or rabbit gammaglobulin within 48 hr of birth through day 38. A third group of animals was untreated. All mice were subsequently immunized with four i.p. injections of castor allergen plus aluminum hydroxide. Results indicate that anti-treatments severely suppressed murine serum IgE levels as compared with control mice. In addition anti-epsilon-treated mice were initially unable to produce detectable reaginic antibody upon immunization with castor bean allergens (CA). Upon further CA immunization, these animals did produce an IgE antibody response, but this was still lower than that detected in control immunized mice. Other immunoglobulin levels in the anti-epsilon-treated mice were not suppressed as compared with those in the control mice. These results suggest that neonatally administered anti-epsilon antisera selectively diminished total IgE levels as well as antigen-induced IgE antibodies in mice.
Perinatal white matter injury: The changing spectrum of pathology and emerging insights into pathogenetic mechanisms (2006)

Perinatal brain injury in survivors of premature birth has a unique and unexplained predilection for periventricular cerebral white matter. Periventricular white-matter injury (PWMI) is now the most common cause of brain injury in preterm infants and the leading cause of chronic neurological morbidity. The spectrum of chronic PWMI includes focal cystic necrotic lesions (periventricular leukomalacia; PVL) and diffuses myelination disturbances. Recent neuroimaging studies support that the incidence of PVL is declining, whereas focal or diffuse noncystic injury is emerging as the predominant lesion. Factors that predispose to PVL during prematurity include hypoxia, ischemia, and maternal-fetal infection. In a significant number of infants, PWMI appears to be initiated by perturbations in cerebral blood flow that reflect anatomic and physiological immaturity of the vasculature. Ischemic cerebral white matter is susceptible to pronounced free radical-mediated injury that particularly targets immature stages of the oligodendrocyte lineage. Emerging experimental data supports that pronounced ischemia in the periventricular white matter is necessary, but not sufficient to generate PWMI. The developmental predilection for PWMI to occur during prematurity appears to be related to both the timing of appearance and regional distribution of susceptible oligodendrocyte progenitors. Injury to oligodendrocyte progenitors may contribute to the pathogenesis of PWMI by disrupting the maturation of myelin-forming oligodendrocytes. Chemical mediators that may contribute to white-matter injury include reactive oxygen species glutamate, cytokines, and adenosine. As our understanding of the pathogenesis of PWMI improves, it is anticipated that new strategies for directly preventing brain injury in premature infants will develop.
Chiral Host. Attempted Synthesis Using McMurry Reaction as a Final Ring Closure Method (1989)

Using the low valent titanium induced carbonyl-carbonyl coupling reaction, it was attempted to synthesize sterically hindered 17-membered cyclic chiral host 2. The semifinal dialdehyde 12 was obtained through 11 step reactions beginning from p-tert-butylphenol and dibenzofuran. When dialdehyde 12 was treated with only intermolecularly coupled dimer 14 was obtained instead of intramolecularly coupled cyclic alkene 2. The mechanistic consideration leading to 14 was discussed and the cation binding properties of dimer 14 and dicarboxylic intermediate 13 was reported, which implies the significance of the principle of preorganization of host's binding sites prior to complexation.
<title>Laser dental decay prevention: does it have a future?</title> (1997)

Previous studies have recorded the reduction of caries-like lesions or demineralization in extracted human teeth that have been irradiated using CO<SUB>2</SUB>, Nd:YAG and Argon lasers, with CO<SUB>2</SUB> or Argon showing up to 40 - 50% reduction. By adding a chemical inhibitor, such as DAC or fluoride to lasing procedures, the demineralization can be reduced 60 - 80%. Studies have demonstrated the laser safety for Argon and CO<SUB>2</SUB> laser in these procedures. Clinical trials are being initiated to evaluate acid resistance of enamel exposed to laser radiation. This presentation will review prior results and present our current findings.
Abstract 380: Optimization of novel therapeutic paradigms for ovarian cancer using molecular imaging (2012)

Abstract Ovarian cancer is the fifth leading cause of cancer death among American woman. Platinum-based chemotherapy, such as cisplatin, represents the standard of care for ovarian cancer. However, toxicicity and acquired resistance to cisplatin have been proven challenging in the treatment of cancer patients. Here, we evaluate the efficacy of targeted inhibition of Akt in combination with cisplatin in an ovarian endometrioid adenocarcinoma (OEA) mouse model wherein Wnt and PI3K signaling pathways are disrupted thus recapitulating the human disease. In cell culture and mouse xenograft models, inhibition of Akt activity in combination with cisplatin is more potent at inducing apoptosis compared to either agent alone. To further explore this finding in living animals, we incorporate a bioluminescence apoptosis reporter into the existing OEA mouse model, to enable monitoring of apoptosis dynamically and non-invasively in real time. Our results demonstrate that Akt inhibitors augment the efficacy of cisplatin by inducing apoptosis more efficiently in our newly developed transgenic OEA model. Magnetic resonance (MR) imaging was also accomplished to determine tumor burden and normalize changes in bioluminescence. Our results show that inhibition of Akt sensitizes OEA to apoptosis in response to cisplatin thus resulting in reducing tumor burden. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 380. doi:1538-7445.AM2012-380
Talin1 Promotes Tumor Invasion and Metastasis via Focal Adhesion Signaling and Anoikis Resistance (2010)

Talin1 is a focal adhesion complex protein that regulates integrin interactions with ECM. This study investigated the significance of talin1 in prostate cancer progression to metastasis in vitro and in vivo. Talin1 overexpression enhanced prostate cancer cell adhesion, migration, and invasion by activating survival signals and conferring resistance to anoikis. ShRNA-mediated talin1 loss led to a significant suppression of prostate cancer cell migration and transendothelial invasion in vitro and a significant inhibition of prostate cancer metastasis in vivo. Talin1-regulated cell survival signals via phosphorylation of focal adhesion complex proteins, such as focal adhesion kinase and Src, and downstream activation of AKT. Targeting AKT activation led to a significant reduction of talin1-mediated prostate cancer cell invasion. Furthermore, talin1 immunoreactivity directly correlated with prostate tumor progression to metastasis in the transgenic adenocarcinoma mouse prostate mouse model. Talin1 profiling in human prostate specimens revealed a significantly higher expression of cytoplasmic talin1 in metastatic tissue compared with primary prostate tumors (P < 0.0001). These findings suggest (a) a therapeutic significance of disrupting talin1 signaling/focal adhesion interactions in targeting metastatic prostate cancer and (b) a potential value for talin1 as a marker of tumor progression to metastasis.
Direct Observation of Xe and Kr Adsorption in a Xe-Selective Microporous Metal–Organic Framework (2015)

The cryogenic separation of noble gases is energy-intensive and expensive, especially when low concentrations are involved. Metal-organic frameworks (MOFs) containing polarizing groups within their pore spaces are predicted to be efficient Xe/Kr solid-state adsorbents, but no experimental insights into the nature of the Xe-network interaction are available to date. Here we report a new microporous MOF (designated SBMOF-2) that is selective toward Xe over Kr under ambient conditions, with a Xe/Kr selectivity of about 10 and a Xe capacity of 27.07 wt % at 298 K. Single-crystal diffraction results show that the Xe selectivity may be attributed to the specific geometry of the pores, forming cages built with phenyl rings and enriched with polar -OH groups, both of which serve as strong adsorption sites for polarizable Xe gas. The Xe/Kr separation in SBMOF-2 was investigated with experimental and computational breakthrough methods. These experiments showed that Kr broke through the column first, followed by Xe, which confirmed that SBMOF-2 has a real practical potential for separating Xe from Kr. Calculations showed that the capacity and adsorption selectivity of SBMOF-2 are comparable to those of the best-performing unmodified MOFs such as NiMOF-74 or Co formate.
Nature of polarization in wide-bandgap semiconductor detectors under high-flux irradiation: Application to semi-insulatingCd1−xZnxTe (2008)

In this paper, we theoretically investigate the mechanism of polarization in wide-bandgap semiconductor radiation detectors under high-flux x-ray irradiation. Our general mathematical model of the defect structure within the bandgap is a system of balance laws based on carrier transport and defect transition rates, coupled together with the Poisson equation for the electric potential. The dynamical system is self-consistently evolved in time using a high-resolution wave propagation numerical algorithm. Through simulation, we identify and present a sequence of dynamics that determines a critical flux of photons above which polarization effects dominate. Using the experience gained through numerical simulation of the full set of equations, we derive a reduced system of conservation laws that describe the dominant dynamics. A multiple scale perturbation analysis of the reduced system is shown to yield an analytical dependence of the maximum sustainable flux on key material, detector, and operating parameters. The predicted dependencies are validated for $16\ifmmode\times\else\texttimes\fi{}16\phantom{\rule{0.3em}{0ex}}\text{pixel}$ CdZnTe monolithic detector arrays subjected to a high-flux $120\phantom{\rule{0.3em}{0ex}}\mathrm{kVp}$ x-ray source.
A Single Injection of an Adeno-Associated Virus Vector into Nuclei with Divergent Connections Results in Widespread Vector Distribution in the Brain and Global Correction of a Neurogenetic Disease (2007)

Neurogenetic disorders typically affect cells throughout the brain. Adeno-associated virus (AAV) vector-mediated transfer of a normal cDNA can correct the metabolic defects at the site of injection, but treatment of the entire brain requires widespread delivery of the normal gene and/or protein. Current methods require multiple injections for widespread distribution. However, some AAV vectors can be transported along neuronal pathways associated with the injected region. Thus, targeting widely dispersed systems in the CNS might be a pathway for gene dispersal from a limited number of sites. We tested this hypothesis in the ventral tegmental area (VTA), a region with numerous efferent and afferent projections. A single 1 mul injection resulted in transport of the vector genome to projection sites in distal parts of the brain. When compared with injections into the striatum, the VTA injection resulted in higher enzyme levels in more regions of the brain. The AAV-9 serotype vector was the most widely disseminated, but AAV-Rh.10 and AAV-1 were also transported after VTA injection. The effect on global lesions of a neurogenetic disease was tested in the mouse model of MPS VII (mucopolysaccharidosis VII), a lysosomal storage disorder. Widespread distribution of the vector genome after AAV-9 VTA injection resulted in even further distribution of the enzyme product, by secretion and uptake by surrounding cells, and complete correction of the storage lesions throughout the entire brain. This unprecedented level of correction from a single injection into the developed brain provides a potential strategy to correct a large volume of brain while minimizing the number of injections.
Recognition of pneumolysin by Toll-like receptor 4 confers resistance to pneumococcal infection (2003)

Streptococcus pneumoniae is one of the leading causes of invasive bacterial disease worldwide. Fragments of the cell wall and the cytolytic toxin pneumolysin have been shown to contribute substantially to inflammatory damage, although the interactions between pneumococcal components and host-cell structures have not been elucidated completely. Results of a previous study indicated that cell-wall components of pneumococci are recognized by Toll-like receptor (TLR)2 but suggested that pneumolysin induces inflammatory events independently of this receptor. In this study we tested the hypothesis that pneumolysin interacts with surface proteins of the TLR family other than TLR2. We found that pneumolysin stimulates tumor necrosis factor-alpha and IL-6 release in wild-type macrophages but not in macrophages from mice with a targeted deletion of the cytoplasmic TLR-adapter molecule myeloid differentiation factor 88, suggesting the involvement of the TLRs in pneumolysin recognition. Purified pneumolysin synergistically activated macrophage responses together with preparations of pneumococcal cell walls or staphylococcal peptidoglycan, which are known to activate TLR2. Furthermore, when compared with wild-type macrophages, macrophages from mice that carry a spontaneous mutation in TLR4 (P712H) were hyporesponsive to both pneumolysin alone and the combination of pneumolysin with pneumococcal cell walls. Finally, these TLR4-mutant mice were significantly more susceptible to lethal infection after intranasal colonization with pneumolysin-positive pneumococci than were control mice. We conclude that the interaction of pneumolysin with TLR4 is critically involved in the innate immune response to pneumococcus.
Injectable Dispersed Systems (2005)

Introduction. Basic Principles. Physicochemical Principles. Biopharmaceutical Principles. Characterization and Analysis. In Vitro/In Vivo Release. Dosage Forms. Emulsions. Suspensions. Liposomes. Microspheres. Sterile Production and Control. Parenteral Technology. Stability and Packaging. Quality Assurance and Regulatory Considerations
Human thymic epithelial cells function as accessory cells for autologous mature thymocyte activation. (1987)

Using human thymocytes and autologous thymic epithelial (TE) cells grown in vitro in long-term culture, we have found TE cells can function as accessory cells for mitogen-induced mature thymocyte activation. Tritiated thymidine incorporation, blast formation, and protein synthesis were all induced in accessory cell-depleted thymocytes by autologous TE cells in the presence of suboptimal concentrations of PHA. After 3 days of mitogen stimulation of thymocyte-TE cell cocultures in vitro, thymocyte blasts bound to TE cells and 77 +/- 4% (mean +/- SEM) of TE cells acquired expression of major histocompatibility complex (MHC) class II (DR) antigen. TE accessory cell function for thymocyte activation was dependent on the number of TE cells added to thymocyte cultures, was not dependent on TE cell division, but did require TE cell protein synthesis. In thymocyte separation experiments, the predominant cell type responding to PHA in the presence of TE cells was T6- mature (stage III) thymocytes. Thus, human TE cells are capable of providing signals that lead to mature thymocyte activation.
Antimalarial and Antiplasmodial Activities of Norneolignans. Syntheses and SAR (2005)

A systematic change of the substituents and side chain of the norneolignan hinokiresinol afforded a 10 fold improvement of the IC(50) value toward inhibition of the growth of Plasmodium falciparum. The more potent compounds controlled the parasitemia in mice infected with Plasmodium berghei.
Paraoxonase-2 Reduces Oxidative Stress in Vascular Cells and Decreases Endoplasmic Reticulum Stress–Induced Caspase Activation (2007)

We suggest that PON2 represents an endogenous defense mechanism against vascular oxidative stress and unfolded protein response-induced cell death, thereby contributing to the prevention of atherosclerosis.