gebhart/patrepeval huggingface dataset:
Seed Source Variation in Growth Performance and Oil Yield of Jatropha curcas Linn. in Central India (2004)

Abstract Results of a seed source evaluation trial of Jatropha curcas Linn. laid out in 1996 at Jabalpur (M.P), a semi arid region of India are reported and discussed. Seeds collected from ten sources from central India representing the states Madhya Pradesh and Maharashtra viz. Gondia, Bichia, Balaghat, Niwas, Khandwa, Burhanpur, Nasik, Chindwara, Kundam and Jabalpur were evaluated for their growth performance from nursery stage (3 months) to field (two years). Variation in seed oil content of different sources were also studied and reported. Significant differences between the seed sources at age 27 months were observed for height, collar diameter, number of branches leaf area and field survival. Seeds collected from different sources also varied significantly in respect of seed and kernel weight and oil content in seed/kernel. The Chhindwara (M.P.) source performed the best and yielded a maximum oil of 39.12% from whole seed and 58.12% from kernel. The oil content ranged from 33.02 to 39.12% in whole seeds and 47.08 to 58.12% in kernel, across the seed sources. The performance of Kundam (M.P.), Jabalpur (M.P.), Bichia (M.P.), Niwas (M.P.) and Nasik (Maharashtra) sources were also found satisfactory for oil yield. Results indicate that genetic differences exist between the seed sources of J. curcas. The growth traits showed significant positive correlation with each other. Fair differences between phenotypic and genotypic coefficient of variability were observed. Heritability (broad sense) values were fairly good with regard to leaf area, height and collar diameter in comparison to survival percent. The relative performance of these sources was fairly consistent throughout the observation period.
Carbon nanotube based biomedical agents for heating, temperature sensoring and drug delivery (2008)

Due to their extraordinary physical and chemical properties carbon nanotubes reveal promising potential as biomedical agents for heating, temperature sensoring and drug delivery on the cellular level. Filling carbon nanotubes with tailored materials realises nanoscaled containers in which the active content is encapsulated by a protecting carbon shell. We describe different synthesis routes and show the structural and magnetic properties of carbon nanotubes. In particular, the filling with magnetic materials offers the potential for hyperthermia applications while the insertion of NMR active substances allows the usage as markers and sensors. The potential of carbon nanotubes for biomedical applications is highlighted by hyperthermia studies which prove their applicability for local in situ heating. In addition we have shown that a non-invasive temperature control by virtue of a carbon-wrapped nanoscaled thermometer and filling with anti-cancer drugs is possible.
Loss of expression of a new member of the DNAJ protein family confers resistance to chemotherapeutic agents used in the treatment of ovarian cancer. (2001)

Differential display-PCR between ovarian tumor cell lines and short-term cultures of normal ovarian epithelial cell brushings was used to isolate a differentially expressed transcript and its corresponding gene. The gene, which mapped to 13q14.1, has partial homology in the DNAJ domain to a number of proteins with a similar domain and was designated as methylation-controlled J protein (MCJ). MCJ has the highest similarity to a functionally undefined protein from Caenorhabditis elegans. MCJ is expressed as a 1.2-kb transcript in several adult tissues, with testis showing the highest level of expression. Expression of MCJ was absent in three of seven ovarian cancer cell lines. Similarly, expression analysis using semiquantitative reverse transcription-PCR indicated that 12 of 18 primary ovarian tumors examined had either a complete absence or lower levels of expression of this gene. 5-Aza-2'-deoxycytidine treatment of the OV202 cell line induced MCJ expression in a dose-dependent manner, implicating methylation in this induction. Loss of heterozygosity and methylation-specific PCR analysis revealed that the loss of MCJ expression in primary tumors and cell lines was attributable to deletion of one allele and methylation of the other. To assess the potential functional significance of MCJ down-regulation, the sensitivity of parental (MCJ-nonexpressing) and MCJ-transfected OV167 cells to antineoplastic agents was evaluated. MCJ expression was associated with enhanced sensitivity to paclitaxel, topotecan, and cisplatin, suggesting that MCJ loss may play a role in de novo chemoresistance in ovarian carcinoma. These observations raise the possibility that MCJ loss may: (a) have potential prognostic significance in ovarian cancer; and (b) contribute to the malignant phenotype by conferring resistance to the most commonly used chemotherapeutic agents for ovarian cancer.
ATP Synthase that Lacks F0a-Subunit (2004)

In a rotary motor F1F0-ATP synthase, F0 works as a proton motor; the oligomer ring of F0c-subunits (c-ring) rotates relative to the F0ab2 domain as protons pass through F0 down the gradient. F0ab2 must exert dual functions during rotation, that is, sliding the c-ring (motor drive) while keeping the association with the c-ring (anchor rail). Here we have isolated thermophilic F1F0(-a) which lacks F0a. F1F0(-a) has no proton transport activity, and F0(-a) does not work as a proton channel. Interestingly, ATPase activity of F1F0(-a) is greatly suppressed, even though its F1 sector is intact. Most likely, F0b2 associates with the c-ring as an anchor rail in the intact F1F0; without F0a, this association prevents rotation of the c-ring (and hence the gamma-subunit), which disables ATP hydrolysis at F1. Functional F1F0 is easily reconstituted from purified F0a and F1F0(-a), and thus F0a can bind to its proper location on F1F0(-a) without a large rearrangement of other-subunits.
FoLT PCR: a simple PCR protocol for amplifying DNA directly from whole blood. (1993)

FoLT (formamide low temperature) PCR is a protocol for amplifying DNA directly from whole blood without any preparative steps. Up to 10% (vol/vol) whole blood can be added directly into the tube containing the PCR mixture. There is no need for transfers, centrifugations, pre-boiling or any preparative step. It involves the use of formamide (18% vol/vol) as well as reduced incubation temperatures (cycles of 85 degrees, 40 degrees, 60 degrees C). The type of anticoagulant used was critical: sodium heparin or EDTA being superior to lithium or fluoride heparin. Our studies indicate that FoLT PCR probably works by reducing the amount of protein coagulation and allowing more DNA template to be accessible for amplification. The sensitivity of FoLT PCR is such that a single copy gene from 5.5 nucleated cells in 1 microliter of whole blood can be detected.
A Southwest Oncology Group phase II trial of recombinant tumor necrosis factor in metastatic breast cancer (1991)

New approaches are needed in the treatment of advanced breast cancer. In vitro studies have shown that recombinant tumor necrosis factor (TNF) is a growth inhibitor for the MCF-7, ZR-75-1, and BT-20 human breast cancer cell lines. Based on these considerations, the Southwest Oncology Group performed a Phase II trial of recombinant TNF (Genentech) (150 micrograms/m2) given by 30-minute intravenous infusion on days 1 to 5 of every other week for 8 weeks. Patients with metastatic breast cancer who had received one prior chemotherapy regimen for advanced disease were eligible. Of the 22 patients who were entered, 3 were ineligible. Nineteen patients who had a performance status of 2 or less could be examined (median age, 53 years). One possible fatal toxic reaction has been seen in a patient who had intracranial bleeding caused by a previously undiagnosed brain metastasis; no other treatment-related deaths have occurred. Toxicity has included nausea, vomiting, fever, chills, myalgia, and fatigue. No Grade 4 toxicity has been observed. Grade 3 toxic reactions have included hypotension (two patients), diarrhea (one patient), transient leukopenia (two patients), and reversible elevations of liver function test values (two patients). No objective responses have been observed. Twelve of 19 patients have died (median survival time, 8.5 months). Recombinant TNF is inactive as a single agent in patients with previously treated metastatic breast cancer.
The First Enantioselective Synthesis of (2R,2‘R)-threo-(+)-Methylphenidate Hydrochloride (1999)

ADVERTISEMENT RETURN TO ISSUEPREVNoteNEXTThe First Enantioselective Synthesis of (2R,2'R)-threo-(+)-Methylphenidate HydrochlorideMahavir Prashad, Hong-Yong Kim, Yansong Lu, Yugang Liu, Denis Har, Oljan Repic, Thomas J. Blacklock, and Peter GiannousisView Author Information Process Research & Development, Chemical & Analytical Development, Novartis Institute for Biomedical Research, 59 Route 10, East Hanover, New Jersey 07936 Cite this: J. Org. Chem. 1999, 64, 5, 1750–1753Publication Date (Web):January 28, 1999Publication History Received26 October 1998Published online28 January 1999Published inissue 1 March 1999https://pubs.acs.org/doi/10.1021/jo9821473https://doi.org/10.1021/jo9821473brief-reportACS PublicationsCopyright © 1999 American Chemical SocietyRequest reuse permissionsArticle Views1504Altmetric-Citations42LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose SUBJECTS:Alcohols,Aldol reactions,Organic compounds,Oxidation,Piperidines Get e-Alerts
Targeting FLT3 Kinase in Acute Myelogenous Leukemia: Progress, Perils, and Prospects (2004)

Activating mutations of the FLT3 receptor tyrosine kinase are the most common recurring genetic abnormality in acute myelogenous leukemia (AM). Inhibition of FLT3 kinase activity by small molecule inhibitors has been proposed as a novel therapeutic approach AML. The pre-clinical and clinical development of candidate FLT3 inhibitors will be reviewed.
Development of Surrogate Reservoir Model (SRM) for fast track analysis of a complex reservoir (2009)

Reservoir simulation is the industry standard for reservoir management that is used in all phases of field development. As the main source of information, prediction and decision-making, the Full Field Models (FFM) is regularly updated to include the latest measurements and interpretations. A typical FFM consists of large number of grid blocks and usually takes hours for each run. This makes comprehensive analysis of the solution space and incorporation of the FFM in smart fields impractical. Surrogate Reservoir Models (SRMs) are introduced as a bridge to make Real-Time Reservoir Management possible. SRMs are replicas of FFM that can run in fractions of a second. They accurately mimic the capabilities of FFM and are used for automatic history matching, real-time optimisation, real-time decision-making and quantification of uncertainties. This paper presents the development of SRM using the state of the art Artificial Intelligence and Data Mining (AI&DM) techniques. An example application to giant oil field in the Middle East and the accuracy of SRM predictions are presented. SRM is used in order to identify the wells that are prime candidate for rate relaxation with the objective of higher oil production without an increase in water cut. After 30 months of production all SRM predictions were proved accurate. [Received: July 6, 2008; Accepted: November 4, 2008]
Investigations of Incorporating Source Directivity Into Room Acoustics Computer Models to Improve Auralizations (2008)

Room acoustics computer modeling and auralizations are useful tools when designing or modifying acoustically sensitive spaces. In this dissertation, the input parameter of source directivity has been studied in great detail to determine, first, its effect in room acoustics computer models and, second, how to better incorporate the directional source characteristics to improve auralizations. The room acoustics computer model was initially validated in terms of accurately incorporating the input source directivity. The next study demonstrated that using directional sources over an omnidirectional source in room acoustics computer models produces significant differences both in terms of calculated room acoustics parameters and auralizations. A recently proposed technique for creating auralizations using multichannel anechoic recordings has been examined with numerous subjective studies, applied to both solo instruments and an orchestra. Through these studies, this process was shown to be effective in terms of improving the realism and source width of the auralizations in a number of cases and also modeling different source orientations. In addition, this approach was applied to modeling an entire orchestra with individual sources, in three different configurations, for the first time. This method shows great promise as a new technique for auralizing both solo instruments and an entire orchestra. [Copies may be obtained from Michelle Vigeant, michelle.vigeant@gmail.com]
Lenalidomide and high-dose dexamethasone compared with dexamethasone as initial therapy for multiple myeloma: a randomized Southwest Oncology Group trial (S0232) (2010)

The Southwest Oncology Group conducted a randomized trial comparing lenalidomide (LEN) plus dexamethasone (DEX; n = 97) to placebo (PLC) plus DEX (n = 95) in newly diagnosed myeloma. Three 35-day induction cycles applied DEX 40 mg/day on days 1 to 4, 9 to 12, and 17 to 20 together with LEN 25 mg/day for 28 days or PLC. Monthly maintenance used DEX 40 mg/day on days 1 to 4 and 15 to 18 along with LEN 25 mg/day for 21 days or PLC. Crossover from PLC-DEX to LEN-DEX was encouraged on progression. One-year progression-free survival, overall response rate, and very good partial response rate were superior with LEN-DEX (78% vs 52%, P = .002; 78% vs 48%, P < .001; 63% vs 16%, P < .001), whereas 1-year overall survival was similar (94% vs 88%; P = .25). Toxicities were more pronounced with LEN-DEX (neutropenia grade 3 or 4: 21% vs 5%, P < .001; thromboembolic events despite aspirin prophylaxis: 23.5% [initial LEN-DEX or crossover] vs 5%; P < .001). This trial was registered at www.clinicaltrials.gov as #NCT00064038.
Identification, cloning and sequence analysis of the poly(3-hydroxyalkanoic acid) synthase gene of the Gram-positive bacteriumRhodococcus ruber (1992)

The first polyhydroxy acid (PHA) synthase gene (phbCRr) of a Gram-positive bacterium was cloned from a genomic library of Rhodococcus ruber in the broad-host-range plasmid vector pRK404. The hybrid plasmid harboring phbCRr allowed the expression of polyhydroxybutyric acid (PHB) synthase activity and restored ability of PHB synthesis in a PHB-negative mutant of Alcaligenes eutrophus. Nucleotide sequence analysis of phbCRr revealed an open reading frame of 1686 bp starting with the rare codon TTG and encoding a protein of relative molecular mass 61371. The deduced amino acid sequence of phbCRr exhibited homologies to the primary structures of the PHA synthesis of A. eutrophus and Pseudomas oleovorans. Preparation of PHA granules by discontinuous density gradient centrifugation of crude cellular extracts revealed four major bands in an SDS polyacrylamide gel. A Mr 61 000 protein was identified as the PHA syntase of R. ruber by N-terminal amino acid sequence determination.
Antineoplastic Agents; I. Three Spirostanol Glycosides from Rhizomes ofDioscorea collettiivar.hypoglauca (1996)

By activity-guided fractionation, three known steroidal saponins, prosapogenin A of dioscin, dioscin and gracillin, were isolated from the total saponin fraction of Dioscorea coiletti var. hypoglauca as active compounds causing morphological abnormality of Pyricularia oryzae mycelia. The compounds also exhibited cytotoxic activity against the cancer cell line K562 in vitro. The structures of the compounds were elucidated on the basis of chemical evidence and IR, FAB-MS, 1H-NMR, 13C-NMR, and two-dimensional NMR (2D-NMR) analysis.
Purification, characterization, and cDNA cloning of an NADPH-cytochrome P450 reductase from mung bean. (1993)

We report here the isolation and deduced amino acid sequence of the flavoprotein, NADPH-cytochrome P450 (cytochrome c) reductase (EC 1.6.2.4), associated with the microsomal fraction of etiolated mung bean seedlings (Vigna radiata var. Berken). An 1150-fold purification of the plant reductase was achieved, and SDS/PAGE showed a predominant protein band with an apparent molecular mass of approximately 82 kDa. The purified plant NADPH-P450 reductase gave a positive reaction as a glycoprotein, exhibited a typical flavoprotein visible absorbance spectrum, and contained almost equimolar quantities of FAD and FMN per mole of enzyme. Specific antibodies revealed the presence of unique epitopes distinguishing the plant and mammalian flavoproteins as demonstrated by Western blot analyses and inhibition studies. Peptide fragments from the purified plant NADPH-P450 reductase were sequenced, and degenerate primers were used in PCR amplification reactions. Overlapping cDNA clones were sequenced, and the deduced amino acid sequence of the mung bean NADPH-P450 reductase was compared with equivalent enzymes from mammalian species. Although common flavin and NADPH-binding sites are recognizable, there is only approximately 38% amino acid sequence identity. Surprisingly, the purified mung bean NADPH-P450 reductase can substitute for purified rat NADPH-P450 reductase in the reconstitution of the mammalian P450-catalyzed 17 alpha-hydroxylation of pregnenolone or progesterone.
Single Conical Nanopores Displaying pH-Tunable Rectifying Characteristics. Manipulating Ionic Transport With Zwitterionic Polymer Brushes (2009)

In this work we describe for the first time the integration of "smart" polymer brushes into single conical nanopores to obtain a new highly functional signal-responsive chemical nanodevice. The responsive brushes were constituted of zwitterionic monomers whose charge is regulated via pH changes in the environmental conditions. The pH-dependent chemical equilibrium of the monomer units provides a fine-tuning of the ionic transport though the nanopore by simply presetting the pH of the electrolyte solution. Our results demonstrate that this strategy enables a higher degree of control over the rectification properties when compared to the nanochannels modified with charged monolayer assemblies. We envision that these results will create completely new avenues to build-up "smart" nanodevices using responsive polymer brushes integrated into single conical nanopores.
The effect of electromagnetic stimulation on the parameters of muscular strength (2014)

A new way to develop muscular strength using electromagnetic stimulation (ES) of muscles during their voluntary contractions has been described. The experiment involved 18 healthy men divided into the control group (CG) and the experimental group (EG) with equal parameters of muscular strength. In performing training exercises (the foot plantar flexion), the m. gastrocnemius of the subjects of the EG was exposed to ES (1.8 T, 5 Hz). The subjects of the CG performing the same exercises did not receive ES. The power torque of the foot plantar flexion in the EG significantly increased (24%) after 10 days of training. The power torque of the foot plantar flexion in the control subjects did not significantly change. We suppose that the increase in the muscular strength in the subjects of the EG was due to the activation of high-threshold motor units effected by ES.
Morphogenesis of the Bacillus anthracis Spore (2006)

Bacillus spp. and Clostridium spp. form a specialized cell type, called a spore, during a multistep differentiation process that is initiated in response to starvation. Spores are protected by a morphologically complex protein coat. The Bacillus anthracis coat is of particular interest because the spore is the infective particle of anthrax. We determined the roles of several B. anthracis orthologues of Bacillus subtilis coat protein genes in spore assembly and virulence. One of these, cotE, has a striking function in B. anthracis: it guides the assembly of the exosporium, an outer structure encasing B. anthracis but not B. subtilis spores. However, CotE has only a modest role in coat protein assembly, in contrast to the B. subtilis orthologue. cotE mutant spores are fully virulent in animal models, indicating that the exosporium is dispensable for infection, at least in the context of a cotE mutation. This has implications for both the pathophysiology of the disease and next-generation therapeutics. CotH, which directs the assembly of an important subset of coat proteins in B. subtilis, also directs coat protein deposition in B. anthracis. Additionally, however, in B. anthracis, CotH effects germination; in its absence, more spores germinate than in the wild type. We also found that SpoIVA has a critical role in directing the assembly of the coat and exosporium to an area around the forespore. This function is very similar to that of the B. subtilis orthologue, which directs the assembly of the coat to the forespore. These results show that while B. anthracis and B. subtilis rely on a core of conserved morphogenetic proteins to guide coat formation, these proteins may also be important for species-specific differences in coat morphology. We further hypothesize that variations in conserved morphogenetic coat proteins may play roles in taxonomic variation among species.