gebhart/patrepeval huggingface dataset:
Rationale for development of immunotherapies that target mucoid Pseudomonas aeruginosa infection in cystic fibrosis patients. (1997)

Despite a complex sputum bacteriology, the progressive decline in pulmonary function that is the hallmark of the genetic disease cystic fibrosis (CF) is attributable to a single infecting pathogen, mucoid Pseudomonas aeruginosa. Therefore, active and passive immunotherapies that target this particular variant of the bacterium should be of value in attenuating infection and interfering with the decline in pulmonary function. The major surface antigen of mucoid P. aeruginosa is referred to as either mucoid exopolysaccharide (MEP) or alginate, a random polymer of D-mannuronic and L-guluronic acid residues linked beta 1-4. During chronic infection CF patients make antibodies to MEP that fail to mediate opsonic killing of bacteria in vitro. These antibodies can be elicited by vaccination in 35-40% of plasma donors given a preparation of MEP comprised of only the highest molecular-weight polymers; inclusion in human vaccines of smaller polymers normally produced by the bacterium fails to elicit opsonic antibodies, just like in infected CF patients. Opsonic, but not non-opsonic, antibodies to MEP protect animals against chronic endobronchial infection. CF patients do produce opsonic antibodies to mucoid P. aeruginosa that are in a planktonic or suspended state, but these antibodies are not directed at the MEP antigen and they fail to kill P. aeruginosa growing in a biofilm. This is the state that the bacteria grow in the lung. Therefore immunoglobulin G preparations with opsonic antibodies to MEP could provide CF patients with antibodies that they normally do not produce during chronic lung infection and may improve their clinical course.
Bleeding from endometrial and vaginal malignant tumors treated with activated recombinant factor VII. (2002)

The authors report two cases of successful employment of human recombinant activated factor VII in gynecological oncological patients (endometrial cancer and vaginal sarcoma) without pre-existing coagulopathy. They conclude that recombinant factor VIIa may be an important and effective drug in severe bleeding in gynecological oncology.
Cloning of β-Primeverosidase from Tea Leaves, a Key Enzyme in Tea Aroma Formation (2002)

A beta-primeverosidase from tea (Camellia sinensis) plants is a unique disaccharide-specific glycosidase, which hydrolyzes aroma precursors of beta-primeverosides (6-O-beta-D-xylopyranosyl-beta-D-glucopyranosides) to liberate various aroma compounds, and the enzyme is deeply concerned with the floral aroma formation in oolong tea and black tea during the manufacturing process. The beta-primeverosidase was purified from fresh leaves of a cultivar for green tea (C. sinensis var sinensis cv Yabukita), and its partial amino acid sequences were determined. The beta-primeverosidase cDNA has been isolated from a cDNA library of cv Yabukita using degenerate oligonucleotide primers. The cDNA insert encodes a polypeptide consisting of an N-terminal signal peptide of 28 amino acid residues and a 479-amino acid mature protein. The beta-primeverosidase protein sequence was 50% to 60% identical to beta-glucosidases from various plants and was classified in a family 1 glycosyl hydrolase. The mature form of the beta-primeverosidase expressed in Escherichia coli was able to hydrolyze beta-primeverosides to liberate a primeverose unit and aglycons, but did not act on 2-phenylethyl beta-D-glucopyranoside. These results indicate that the beta-primeverosidase selectively recognizes the beta-primeverosides as substrates and specifically hydrolyzes the beta-glycosidic bond between the disaccharide and the aglycons. The stereochemistry for enzymatic hydrolysis of 2-phenylethyl beta-primeveroside by the beta-primeverosidase was followed by (1)H-nuclear magnetic resonance spectroscopy, revealing that the enzyme hydrolyzes the beta-primeveroside by a retaining mechanism. The roles of the beta-primeverosidase in the defense mechanism in tea plants and the floral aroma formation during tea manufacturing process are also discussed.
Improving the Results of Ganglion Aspiration by the Use of Hyaluronidase (1997)

We present the results of a prospective randomized trial comparing the treatment of ganglia by aspiration under local anaesthetic and either instillation of steroid alone or with the prior use of hyaluronidase. Thirty-five patients were treated in each group and followed up for 2 years. The cure rate with the combined use of hyaluronidase and methylprednisolone was 89%, compared to 57% when treated by aspiration and instillation of methylprednisolone alone.
The neuroprotective effect of a nitric oxide inhibitor in a rat model of focal cerebral ischaemia (1992)

Recent data showed that glutamate toxicity in primary cortical cultures is mediated by nitric oxide. In order to investigate the effect of inhibition of NO synthase on focal cerebral ischaemia in rats, we studied the histological consequences of a middle cerebral artery (MCA) occlusion after post-operative treatment with NG-nitro-L-arginine methyl ester, an inhibitor of nitric oxide synthase. We found a significant reduction of cortical (-43%) and striatal (-25%) necrotic volumes induced by MCA occlusion, indicating that NO synthesis plays an important role in the neurotoxic cascade leading to neuronal damage after focal cerebral ischaemia in rats.
A Hierarchical Multi-classifier Framework for Landform Segmentation Using Multi-spectral Satellite Images - A Case Study over the Indian Subcontinent (2010)

There is an increasing need for automatically segmenting the regions of different landforms from a multispectral satellite image. The problem of Landform classification using data only from a 3-band optical sensor (IRS-series), in the absence of DEM (Digital Elevation Model) data, is complex due to overlapping and confusing spectral reflectance from several different landform classes. We propose a hierarchical method for landform classification for identifying a wide variety of landforms occurring over parts of the Indian subcontinent. At the first stage, the image is classified into one of three broad categories: Desertic, Coastal or Fluvial, using decision fusion of three SVMs (Support Vector Machine). In the second stage, the image is then segmented into different regions of landforms, specifically belonging to the class (category) identified at stage 1. To show the improvement in accuracy of our classification method, the results are compared with two other methods of classification.
Fluorescent methylation-specific polymerase chain reaction for DNA-based detection of prostate cancer in bodily fluids. (2000)

Promoter hypermethylation of the glutathione S-transferase P1 gene (GSTP1) is the most frequent DNA alteration in prostatic carcinoma. Because this epigenetic DNA alteration can be reliably detected by methylation-specific PCR (MSP), we applied this new technique for molecular detection of prostate cancer in various human bodily fluids. We investigated GSTP1 promoter hypermethylation in DNA isolated from plasma, serum, ejaculate, and urine after prostate massage and from prostate carcinoma tissues from 33 patients with prostate cancer and 26 control patients with benign prostatic hyperplasia (BPH). Fluorescently labeled MSP products were analyzed on an automated gene sequencer. Whereas GSTP1 promoter hypermethylation was not detectable by MSP in prostate tissue and bodily fluids from patients with BPH, we found it in 94% of tumors (16 of 17), 72% of plasma or serum samples (23 of 32), 50% of ejaculate (4 of 8) and 36% of urine (4 of 11) from patients with prostate cancer. Additionally, MSP identified circulating tumor cells in 30% (10 of 33) of prostate cancer patients. Analysis of GSTP1 promoter hypermethylation by MSP thus provides a specific tool for molecular diagnosis of prostate cancer in bodily fluids.
Inhibitory effect of glucagon-like peptide-1 on small bowel motility. Fasting but not fed motility inhibited via nitric oxide independently of insulin and somatostatin. (1998)

Effects of glucagon-like peptide-1 (GLP-1)(7-36)amide on fasted and fed motility in the rat small intestine were investigated in relation to its dependence on nitric oxide (NO), insulin, and somatostatin. Small bowel electromyography was performed using bipolar electrodes implanted 15, 25, and 35 cm distal to pylorus, and transit was studied with a radioactive marker. In the fasted state, GLP-1 (5-20 pmol kg-1min-1), reaching physiological plasma levels, prolonged the migrating myoelectric complex (MMC) cycle length along with slowed transit. This effect was antagonized by exendin(9-39)amide. The NO synthase inhibitor Nomega-nitro- L-arginine (L-NNA) also blocked the response to GLP-1, whereas L-arginine restored the response. Insulin (80-200 pmol kg-1min-1) induced irregular spiking, whereas somatostatin (100-500 pmol kg-1min-1) increased the MMC cycle length, independently of NO. In the fed state, GLP-1 (20-40 pmol kg-1min-1) reduced motility, an inhibition unaffected by L-NNA, whereas motility was stimulated by exendin(9-39)amide. Infusion of GLP-1 (20-100 pmol kg-1min-1) did not affect plasma insulin, but somatostatin was increased. In conclusion, GLP-1 seems to inhibit small bowel motility directly via the GLP-1 receptor. Inhibition of fasting motility is dependent of NO and not mediated via insulin or somatostatin, whereas inhibition of fed motility is independent of NO.
EFFECT OF PHYSICAL PROPERTIES OF FOOD PARTICLES ON THE DEGREE OF GRAININESS PERCEIVED IN THE MOUTH (1999)

ABSTRACT Nineteen food materials were pulverized and passed through standard sieves to prepare samples with different particle sizes (23–500 μm). Each sample was tested for physical properties, and sensory evaluation tests were conducted to obtain the graininess threshold value and the degree of graininess discrimination. The graininess threshold value tended to decrease and the degree of graininess discrimination tended to increase with increasing degree of circularity, with decreasing solubility, with decreasing water absorption rate‐ particle size coefficient, and with increasing WK 2 /K 1 . The degree of graininess discrimination tended to increase with increasing particle size and increasing WK 2 . With a multiple‐regression analysis, the graininess threshold value was expressed by six physical properties, and the degree of graininess discrimination was expressed by eight physical properties, each with high contribution rates.
Studies of Binary Complexes of Metal Ions with 2, 2-Bipyridyl by Potentiometry (2015)

In biological systems transition metal ions exists in the form of different metal ligand complexes therefore investigations on the stability of metal complexes in relation with various structural features are important. Such type of study will help for understanding the driving forces leading to the formation of such complexes in the biological systems. Here we have reported systematic potentiometric studies on the formation of metal ligand complexes of transition metal ions with 2, 2-bipyridyl ligand in aqueous solution at 27 0 C temperature in the presence of electrolyte 1N NaNO 3 . The protonation constant and metal ligand stability constants were determined using Irving Rossotti titration technique. Data obtained from titrations were analysed by SCOGS computer programs. The protonation constant values obtained by half integral method and point wise method are in agreement.
Gold Coating of Silver Nanoprisms (2012)

Abstract Core–shell Ag@Au nanoprisms are prepared through a surfactant‐free seed‐mediated approach by taking advantage of the anisotropic structure of silver nanoprisms as seeds. The gold coating on the silver nanoprism surface is achieved by using hydroxylamine as a mild reducing agent, and the final fully gold‐coated prism structures are confirmed by microscopic and spectroscopic characterization. The resulting Ag@Au core–shell structure preserves the optical signatures of nanoprisms and offers versatile functionality and particularly better stability against oxidation than the bare silver nanoprism. The surface plasmon resonances of the core–shell Ag@Au nanoprisms can be tuned throughout the visible and near‐IR range as a function of the Au shell thickness. Such tailorable optical features and surfactant‐free gold shells have great potential applications in biosensing and bioimaging.
Expression of Bcl‐2 Family Proteins in Advanced Laryngeal Squamous Cell Carcinoma: Correlation With Response to Chemotherapy and Organ Preservation (2002)

The findings indicate that laryngeal cancer cells typically produce high levels of only one of the apoptosis protective proteins, Bcl-2 or Bcl-X(L). Prospective studies of larger numbers of patients are under way to determine whether Bcl-X(L) expression will be a useful marker predicting larynx preservation.
Organophosphates dysregulate dopamine signaling, glutamatergic neurotransmission, and induce neuronal injury markers in striatum (2011)

The neurological effects of organophosphate (OP) pesticides, commonly used on foods and in households, are an important public health concern. Furthermore, subclinical exposure to combinations of organophosphates is implicated in Gulf War illness. Here, we characterized the effects of the broadly used insecticide chlorpyrifos (CPF) on dopamine and glutamatergic neurotransmission effectors in corticostriatal motor/reward circuitry. CPF potentiated protein kinase A (PKA)-dependent phosphorylation of the striatal protein dopamine- and cAMP-regulated phosphoprotein of M(r) 32 kDa (DARPP-32) and the glutamate receptor 1 (GluR1) subunit of α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors in mouse brain slices. It also increased GluR1 phosphorylation by PKA when administered systemically. This correlated with enhanced glutamate release from cortical projections in rat striatum. Similar effects were induced by the sarin congener, diisopropyl fluorophosphate, alone or in combination with the putative neuroprotectant, pyridostigmine bromide and the pesticide N,N-diethyl-meta-toluamide (DEET). This combination, meant to mimic the neurotoxicant exposure encountered by veterans of the 1991 Persian Gulf War, also induced hyperphosphorylation of the neurofibrillary tangle-associated protein tau. Diisopropyl fluorophosphate and pyrodostigmine bromide, alone or in combination, also increased the aberrant activity of the protein kinase, Cdk5, as indicated by conversion of its activating cofactor p35 to p25. Thus, consistent with recent findings in humans and animals, organophosphate exposure causes dysregulation in the motor/reward circuitry and invokes mechanisms associated with neurological disorders and neurodegeneration.
Distinct spatial and temporal expression patterns of K+ channel mRNAs from different subfamilies (1992)

Different types of K+ channels play important roles in many aspects of excitability. The isolation of cDNA clones from Drosophila, Aplysia, Xenopus, and mammals points to a large multigene family with several distinct members encoding K+ channels with unique electrophysiological and pharmacological properties. Given the pivotal role K+ channels play in the fine tuning of electrical properties of excitable tissues, we studied the spatial and temporal basis of K+ channel diversity. We report the isolation of two putative K+ channels that define two new subfamilies based upon amino acid sequence similarities with other known K+ channels. Northern blot and in situ hybridization studies revealed differences in the spatial and temporal expression patterns for these two new clones along with mRNAs from other K+ channel subfamilies. Two of the K+ channels studied are predominantly expressed in the brain. One of the "brain-specific" K+ channels is first expressed after about 2 weeks of postnatal cerebellar development and remains at levels about 10-fold higher in the cerebellum than in the rest of the brain.
A strategy to convert propane to aromatics (BTX) using TiNp4 grafted at the periphery of ZSM-5 by surface organometallic chemistry (2019)

The direct conversion of propane into aromatics (BTX) using modified ZSM-5 was achieved with a strategy of "catalysis by design". In contrast to the classical mode of action of classical aromatization catalysts which are purely based on acidity, we have designed the catalyst associating two functions: One function (Ti-hydride) was selected to activate the C-H bond of propane by σ-bond metathesis to further obtain olefin by β-H elimination and the other function (Brønsted acid) being responsible for the oligomerization, cyclization, and aromatization. This bifunctional catalyst was obtained by selectively grafting a bulky organometallic complex of tetrakis(neopentyl)titanium (TiNp4) at the external surface (external silanol ([triple bond, length as m-dash]Si-OH) group) of [H-ZSM-5300] to obtain [Ti/ZSM-5] catalyst 1. This metal was chosen to activate the C-H bond of paraffin at the periphery of the ZSM-5 while maintaining the Brønsted acid properties of the internal [H-ZSM-5] for oligomerization, cyclization, and aromatization. Catalyst 2 [Ti-H/ZSM-5] was obtained after treatment under H2 at 550 °C of freshly prepared catalyst 1 ([Ti/ZSM-5]) and catalyst 1 was thoroughly characterized by ICP analysis, DRIFT, XRD, N2-physisorption, multinuclear solid-state NMR, XPS and HR-TEM analysis including STEM imaging. The conversion of propane to aromatics was studied in a dynamic flow reactor. With the pristine [H-ZSM-5300] catalyst, the conversion of propane is very low. However, with [Ti-H/ZSM-5] catalyst 2 under the same reaction conditions, the conversion of propane remains significant during 60 h of the reaction (ca. 22%). Furthermore, the [Ti-H/ZSM-5] catalyst shows a good and stable selectivity (55%) for aromatics (BTX) of time on stream. With 2, it was found that the Ti remains at the periphery of the [H-ZSM-5] even after reaction time.
Location, function, and nucleotide sequence of a promoter for bacteriophage T3 RNA polymerase. (1981)

The major promoters for bacteriophage T3 RNA polymerase on the T3 genome have been mapped by DNA.RNA filter hybridization. One promoter is located in a 300-base-pair Hpa I restriction fragment near the genetic "left" end of T3 DNA. The sequence in the vicinity of the major initiation site of transcription in this region has been determined. A part of the (-)strand sequence is 5' T-A-T-T-T-A-C-C-C-T-C-A-C-T-A-A-A-G-+1 G-G-A-A-U 3'. Comparison of this sequence with the prototype 23-base-pair promoter sequence for bacteriophage T7 RNA polymerase shows a striking pattern of homology and divergence. Between positions -9 and +4, the sequences are virtually identical, whereas between positions -17 and -10, the sequences are quite different. It is postulated that these sequence subsets may perform different functions in transcription initiation by the phage RNA polymerases.
Percutaneous gastrojejunostomy with a modified Cope loop catheter. (1990)

Various techniques for percutaneous gastrojejunostomies have been reported [1 -5]. This report describes our method of using a modified catheter placed through a long peel-away sheath. The peel-away sheath is mounted on a van Andel dilator that allows easy single-step track dilatation and placement of a feeding catheter with a proximal Cope loop for retention.
Classification of leukemia diseased cells (2016)

In this paper, the characteristics of leukemia diseased cells, diseased cells existing classification methods were studied and analyzed, in order to solve classification categories leukemia diseased cells more characteristic dimensions of the problem of high, finite automata and kernel methods, and experimental verification the advantages of this method.
Glycolysis and methylaminoisobutyrate uptake in rat-1 cells transfected with ras or myc oncogenes. (1985)

A high rate of aerobic glycolysis was catalyzed by rat-1 cells transfected with a ras oncogene (ras cells); rat-1 cells and rat-1 cells transfected with myc oncogene (myc cells) showed a low rate of glycolysis that was increased after exposure of the cells to type B transforming growth factor (TGF-beta). The uptake of radioactive methylaminoisobutyric acid or L-methionine via system A of amino acid transport also was accelerated after exposure of these cells to TGF-beta, with the myc cells being most sensitive and the ras cells least sensitive. Methionine was found to be a potent inhibitor of glycolysis in ras cells as well as in rat-1 or myc cells that were exposed to TGF-beta. We propose a relationship between the product of the ras oncogene (p21) and the protein(s) induced by exposure to TGF-beta.
VEGF induces S1P 1 receptors in endothelial cells: Implications for cross-talk between sphingolipid and growth factor receptors (2003)

Sphingosine 1-phosphate (S1P) is a platelet-derived sphingolipid that binds to S1P1 (EDG-1) receptors and activates the endothelial isoform of NO synthase (eNOS). S1P and the polypeptide growth factor vascular endothelial growth factor (VEGF) act independently to modulate angiogenesis and activate eNOS. In these studies, we explored the cross-talk between S1P and VEGF signaling pathways. When cultured bovine aortic endothelial cells were treated with VEGF (10 ng/ml), the expression of S1P1 protein and mRNA increased by approximately 4-fold. S1P1 up-regulation by VEGF was seen within 30 min of VEGF addition and reached a maximum after 1.5 h. By contrast, expression of neither bradykinin B2 receptors nor the scaffolding protein caveolin-1 was altered by VEGF treatment. The EC50 for VEGF-promoted induction of S1P1 expression was approximately 2 ng/ml, within its physiological concentration range. S1P1 induction by VEGF was attenuated by the tyrosine kinase inhibitor genistein and by the PKC inhibitor calphostin C. Preincubation of bovine aortic endothelial cells with VEGF (10 ng/ml for 90 min) markedly enhanced subsequent S1P-dependent eNOS activation. VEGF pretreatment of cultured endothelial cells also markedly potentiated S1P-promoted eNOS phosphorylation at Ser-1179, as well as S1P-mediated activation of kinase Akt. In isolated rat arteries, VEGF pretreatment markedly potentiated S1P-mediated vasorelaxation and eNOS Ser-1179 phosphorylation. Taken together, these data indicate that VEGF specifically induces expression of S1P1 receptors, associated with enhanced intracellular signaling responses to S1P and the potentiation of S1P-mediated vasorelaxation. We suggest that VEGF acts to sensitize the vascular endothelium to the effects of lipid mediators by promoting the induction of S1P1 receptors, representing a potentially important point of cross-talk between receptor-regulated eNOS signaling pathways in the vasculature.
Synthesis and antitumor activity of dihydro-5-azacytidine, a hydrolytically stable analog of 5-azacytidine (1977)

<P>Abstract copyright UK Data Service and data collection copyright owner.</P>The NOP National Political Surveys were designed principally to ascertain public opinion on political parties, leaders and government, and to record voting intention. In addition, the majority of the surveys included data of topical interest and of social importance.<br>