gebhart/patrepeval huggingface dataset:
Expression of a mitogen-responsive gene encoding prostaglandin synthase is regulated by mRNA splicing. (1991)

Rous sarcoma virus was shown to induce in chicken embryo fibroblasts (CEF) a 4.1-kilobase mRNA (designated CEF-147) encoding a 603-amino acid protein. Analysis of the protein sequence showed that it shared 59% amino acid identity with sheep prostaglandin G/H synthase, the enzyme that catalyzes the rate-limiting steps in the production of prostaglandins. Significant differences, at both the protein and mRNA levels, existed between the src oncogene product-inducible prostaglandin synthase and the protein isolated and cloned from sheep seminal vesicle, suggesting that the src-inducible prostaglandin synthase may be a new form of the enzyme. A distinguishing feature of src-inducible prostaglandin synthase mRNA is its low abundance in nonproliferating chicken embryo fibroblasts and its relatively high abundance in src-transformed cells. Additionally, the majority of the src-inducible prostaglandin synthase RNA present in nonproliferating cells was found to be nonfunctional because of the presence of an unspliced intron that separated the signal peptide from the remainder of the protein. Upon mitogenic stimulation, this intron was removed, resulting in the induction of fully-spliced CEF-147 mRNA.
Light and electron microscopic immunohistochemical localization of N-acetylaspartylglutamate NAAG in the olivocerebellar pathway of the rat (1997)

The inferior olive (IO) is the sole contributor of climbing fibers (CF) to the Purkinje cells of the cerebellar cortex. Although the anatomy and the connectivity between the IO and the cerebellum have been well established, there is still controversy regarding the neurotransmitter systems mediating olivocerebellar projections. The excitatory amino acids, glutamate (Glu) and aspartate (Asp), have both been considered as neurotransmitter candidates of olivocerebellar projections in the rat. More recently N-acetylaspartylglutamate (NAAG) has also been proposed as a transmitter of cerebellar climbing fibers based on biochemical and electrophysiological data. The aim of the present study was to determine whether NAAG immunoreactivity is present in the IO and CF at the light and electron microscopic levels and to quantitate the amount of immunogold labeling in olivary neurons and climbing fiber terminals containing this dipeptide. A polyclonal antisera against NAAG was utilized with a peroxidase-labeled avidin-biotin procedure to demonstrate these immunoreactive neurons in the IO at the light microscopic level. Approximately 45% of olivary neurons display NAAG-like immunoreactivity, and their distribution is unevenly clustered throughout the inferior olive. Using postembedding immunogold electron microscopy in combination with quantitative procedures, we found the highest densities of gold particles in the axonal terminals synapsing on olivary neurons (101.0 particles/microns2), in CF terminals (96.3 particles/microns2), and in some mossy fiber terminals (101.0 particles/microns2). Approximately half of the climbing fiber terminals examined were unlabeled. Moderate labeling occurred in CF axons (70.8 particles/microns2), while IO neuronal perikarya were lightly but significantly labeled (41.6 particles/microns2). The localization of NAAG in the subset of cerebellar climbing fiber terminals provides anatomical support for the hypothesis that NAAG may serve as a neurotransmitter/neuromodulator candidate in the olivocerebellar pathway.
An application of neural net chips: handwritten digit recognition (1988)

A general-purpose, fully interconnected neural-net chip was used to perform computationally intensive tasks for handwritten digit recognition. The chip has nearly 3000 programmable connections, which can be set for template matching. The templates can be reprogrammed as needed during the recognition sequence. The recognition process proceeds in four major steps. First, the image is captured using a TV camera and a digital framegrab. This image is converted, using a digital computer, to either black or white pixels and scaled to fill a 16*16-pixel frame. Next, using the neural-net chip, the image is skeletonized, i.e. the image is thinned to a backbone one pixel wide. Then, the chip is programmed, and a feature map is created by template-matching stored primitive patterns on the chip with regions on the skeletonized image. Finally, recognition, based on the feature map, is achieved using any one of a variety of statistical and heuristic techniques on a digital computer. Best scores range between 90% and 99% correct classification, depending on the quality of the original handwritten digits.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Nanomedicine in cerebral palsy (2013)

Cerebral palsy is a chronic childhood disorder that can have diverse etiologies. Injury to the developing brain that occurs either in utero or soon after birth can result in the motor, sensory, and cognitive deficits seen in cerebral palsy. Although the etiologies for cerebral palsy are variable, neuroinflammation plays a key role in the pathophysiology of the brain injury irrespective of the etiology. Currently, there is no effective cure for cerebral palsy. Nanomedicine offers a new frontier in the development of therapies for prevention and treatment of brain injury resulting in cerebral palsy. Nanomaterials such as dendrimers provide opportunities for the targeted delivery of multiple drugs that can mitigate several pathways involved in injury and can be delivered specifically to the cells that are responsible for neuroinflammation and injury. These materials also offer the opportunity to deliver agents that would promote repair and regeneration in the brain, resulting not only in attenuation of injury, but also enabling normal growth. In this review, the current advances in nanotechnology for treatment of brain injury are discussed with specific relevance to cerebral palsy. Future directions that would facilitate clinical translation in neonates and children are also addressed.
Optical paths and realization technologies (2002)

This paper explores the transport technologies that will enable a further leap forward in transport network evolution. It is demonstrated that optical path technologies such as WP (wavelength path) and VWP (virtual wavelength path) enhance not only the transmission capacity, but also cross-connect node throughput cost-effectively by capitalizing on the wavelength routing scheme. This results in significant transport network cost reduction. Optical path realization technologies focusing on optical path cross-connect systems are examined. Requirements for the optical path cross-connect system are elucidated and a new cross-connect system architecture is proposed. The architecture exploits PLC (planar lightwave circuit) and other commercially available technologies suitable for mass-production. It is proved that the architecture has various advantages such as highly modular-growth capability, low optical loss, and the maximum commonality for WP and VWP. The optical path technologies introduced in this paper will pave the way for a new transport network paradigm, a ubiquitous, bandwidth-abundant and affordable broadband ISDN.
A temperature-sensitive mutation in a herpes simplex virus type 1 gene required for viral DNA synthesis maps to coordinates 0.609 through 0.614 in UL (1988)

ts701 is a temperature-sensitive mutant of herpes simplex virus type 1 strain KOS induced by hydroxylamine mutagenesis (C.T. Chu, D. S. Parris, R. A. F. Dixon, F. E. Farber, and P. A. Schaffer, Virology 98:168-181, 1979). In the present study, the mutation rendering ts701 temperature sensitive was mapped to coordinates 0.609 through 0.614 in the UL region of the genome. At the nonpermissive temperature, ts701 (i) failed to induce the synthesis of viral DNA, (ii) exhibited a dramatically reduced ability to drive replication of a plasmid containing the herpes simplex virus origin of viral DNA synthesis, oriS, (iii) generated no viral polypeptides of the late (gamma 2) kinetic class, and (iv) produced virions with electron-translucent cores. Northern (RNA) blot hybridization demonstrated that two mRNAs--one of the beta kinetic class and one of the gamma kinetic class--hybridized to a 1.3-kilobase viral DNA fragment that rescued the mutation in ts701. Based on the phenotype and mapping of ts701, it is likely that its mutation lies in the gene specifying the 65,000-Mr DNA-binding protein (65KDBP) recently described by Marsden et al. (H.S. Marsden, M.E.M. Campbell, L. Haarr, M. C. Frame, D. S. Parris, M. Murphy, R. G. Hope, M. T. Muller, and C. M. Preston, J. Virol. 61:2428-2437, 1987).
Acrylic Platform from Renewable Resources via a Paradigm Shift in Lactide Polymerization (2016)

A new polyacrylate, poly(methylidenelactide), with high thermal stability and derived from biobased resources is reported. This polymer is formed from the radical polymerization of a modified lactide derivative and represents one of the few examples of an acrylic from which the entire mass is bioderived and is made from a simplistic synthesis. Furthermore, poly(methylidenelactide) serves as a foundation for a platform of new acrylic structures, owing to pendant cyclic diesters that are susceptible to postpolymerization modification via simple transesterification chemistry. Several examples of unique acrylics made from poly(methylidenelactide) are synthesized and characterized.
Comparison between Candida albicans Agglutinin-Like Sequence Gene Expression Patterns in Human Clinical Specimens and Models of Vaginal Candidiasis (2005)

Expression of the eight genes in the Candida albicans agglutinin-like sequence (ALS) family was studied by reverse transcription-PCR of RNA isolated from clinical vaginal fluid specimens and vaginal candidiasis model systems. Although expression of all ALS genes was detected across the set of clinical specimens, ALS1, ALS2, ALS3, and ALS9 transcripts were detected most frequently, and expression of ALS4 and ALS5 was detected least frequently. Laboratory strain 3153A and two C. albicans strains isolated from the clinical specimens were studied using two models of vaginal candidiasis to determine how closely these models mimicked the clinical specimens at the level of gene expression. ALS gene expression patterns in a murine vaginitis model were identical to those from the clinical specimens. Expression of more ALS genes was detected in specimens collected 7 days after infection compared to those collected at 4 days. Similar patterns of ALS gene expression were observed when the three C. albicans strains were tested in the reconstituted human vaginal epithelium model. In this model, expression of ALS4, ALS5, ALS6, and ALS7 was least frequently detected. Negative or weakened signals for ALS4 expression were observed at early time points, suggesting that ALS4 expression, which was strong in the inoculum cells, was down-regulated upon contact of C. albicans with vaginal epithelial cells in this model. The data presented here support the conclusion of host-site-specific influences on ALS gene expression and validate the use of the experimental models for evaluating the phenotype of als/als mutant strains.
Influence of medium composition on 7-alkoxycoumarinO-dealkylase activities of rat hepatocytes in primary maintenance culture (1988)

1. The activities of 7-methoxycoumarin (7-MCOD), 7-ethoxycoumarin (7-ECOD) and 7-propoxycoumarin (7-PCOD) O-dealkylases decreased by 75-90% during culture of rat hepatocytes for 72 h. 2. The addition of dexamethasone (D) produced a stabilization or modest enhancement of 7-ECOD and 7-PCOD activities depending on the medium used; D was without effect on 7-MCOD activity. 3. The addition of nicotinamide (N) produced some stabilization of 7-ECOD and 7-PCOD activities but not of 7-MCOD activity. 4. The addition of D + N was associated with large increases in 7-ECOD and 7-PCOD activities, again with little effect on 7-MCOD activity. 5. Ethoxyresorufin O-dealkylase activity correlated with 7-ECOD/7-PCOD activities, whereas pentoxyresorufin O-dealkylase activity correlated with 7-MCOD activity. 6. It is concluded that D exerts a selective effect on certain forms of cytochrome P-450, but that more than one mechanism is probably implicated in this effect. 7. The magnitudes of induction of 7-ECOD activity by phenobarbitone and beta-naphthoflavone were blunted when cells were treated in culture when compared to treatment in vivo; the presence of D in the culture medium did not modify this phenomenon.
Steady‐state pharmacokinetics of oestradiol gel in post‐menopausal women: effects of application area and washing (1997)

A higher oestradiol absorption was achieved from a smaller application area. No marked differences were observed in the pharmacokinetics between 200 cm2 and 400 cm2 application areas, which are those recommended for this oestradiol gel preparation.
Isolation and characterization of Corynebacterium diphtheriae nontandem double lysogens hyperproducing CRM197 (1983)

Phage beta 197tox-, which codes for CRM197, a nontoxic protein immunochemically indistinguishable from diphtheria toxin, was UV induced from a culture of the C7(beta 197)tox- strain. A total of 191 C7(beta 197)tox- lysogens were isolated and selected according to the halo produced on TYE agar containing antidiphtheria toxin serum and were further characterized by Southern blots of their chromosomal DNA. Most of the isolates turned out to be monolysogens, but some tandem and nontandem double lysogens were also found. The nontandem double lysogens were stable and capable of giving high yields of CRM197, up to threefold higher than monolysogens. They are, therefore, suitable for large-scale industrial production.
Nanoparticle-based detection in cerebral spinal fluid of a soluble pathogenic biomarker for Alzheimer's disease (2005)

The recently developed ultrasensitive bio-barcode assay was used to measure the concentration of amyloid-beta-derived diffusible ligands (ADDLs), a potential soluble pathogenic Alzheimer's disease (AD) marker, in the cerebrospinal fluid (CSF) of 30 individuals. ADDL concentrations for the subjects diagnosed with AD were consistently higher than the levels in the CSF taken from nondemented age-matched controls. Studies of ADDLs or for any other potential pathogenic AD markers in CSF have not been possible because of their low concentration in CSF (<1 pM). This study is a step toward a diagnostic tool, based on soluble pathogenic markers for the debilitating disease.
A formula for the determination of error values for Hermitian codes (2002)

A formula for the determination of error values for a Hermitian code is given. The formula can be seen as a generalization of Forneys' formula that applies in the decoding of Reed-Solomon codes.
Hover widgets (2006)

We present Hover Widgets, a new technique for increasing the capabilities of pen-based interfaces. Hover Widgets are implemented by using the pen movements above the display surface, in the tracking state. Short gestures while hovering, followed by a pen down, access the Hover Widgets, which can be used to activate localized interface widgets. By using the tracking state movements, Hover Widgets create a new command layer which is clearly distinct from the input layer of a pen interface. In a formal experiment Hover Widgets were found to be faster than a more traditional command activation technique, and also reduced errors due to divided attention.
Characteristic Infrared Bands of Monosubstituted Amides (1956)

Infrared spectra of various monosubstituted amides and the corresponding deuterated compounds have been measured in the gaseous, liquid, and crystalline states and in solutions. From the experimental results, the bands characteristic of the amide structure have been determined. Furthermore, from the comparison with the spectra of related substances and by the application of the product rule, the assignments of these characteristic bands have been made. The observed change of frequencies of these characteristic bands with change of state confirms this assignment.
Effect of Molecular Weight on the Mechanical and Electrical Properties of Block Copolymer Electrolytes (2007)

The relationship between ionic conductivity, morphology, and rheological properties of polystyrene-block-poly(ethylene oxide) copolymers (SEO) doped with a lithium salt, Li[N(SO2CF3)2], is elucidated. We focus on lamellar samples with poly(ethylene oxide) (PEO) volume fractions, φ, ranging from 0.38 to 0.55, and PEO block molecular weights, MPEO, ranging from 16 to 98 kg/mol. The low-frequency storage modulus (G‘) at 90 °C increases with increasing MPEO from about 4 × 105 to 5 × 107 Pa. Surprisingly, the conductivity of the SEO/salt mixtures with the molar ratio of Li to ethylene oxide moieties of 0.02 σ, also increases with increasing MPEO, from 6.2 × 10-5 to 3.6 × 10-4 S/cm at 90 °C. We compare σ with the conductivity of pure PEO/salt mixtures, σPEO, and find that σ/[φσPEO] of our highest molecular weight sample is close to 0.67, the theoretical upper limit for transport through randomly oriented lamellar grains.
Metabolites of cannabidiol identified in human urine (1990)

1. Urine from a dystonic patient treated with cannabidiol (CBD) was examined by g.l.c.-mass spectrometry for CBD metabolites. Metabolites were identified as their trimethylsilyl (TMS), [2H9]TMS, and methyl ester/TMS derivatives and as the TMS derivatives of the product of lithium aluminium deuteride reduction. 2. Thirty-three metabolites were identified in addition to unmetabolized CBD, and a further four metabolites were partially characterized. 3. The major metabolic route was hydroxylation and oxidation at C-7 followed by further hydroxylation in the pentyl and propenyl groups to give 1"-, 2"-, 3"-, 4"- and 10-hydroxy derivatives of CBD-7-oic acid. Other metabolites, mainly acids, were formed by beta-oxidation and related biotransformations from the pentyl side-chain and these were also hydroxylated at C-6 or C-7. The major oxidized metabolite was CBD-7-oic acid containing a hydroxyethyl side-chain. 4. Two 8,9-dihydroxy compounds, presumably derived from the corresponding epoxide were identified. 5. Also present were several cyclized cannabinoids including delta-6- and delta-1-tetrahydrocannabinol and cannabinol. 6. This is the first metabolic study of CBD in humans; most observed metabolic routes were typical of those found for CBD and related cannabinoids in other species.
Absolute, On-Line Monitoring of Molar Mass during Polymerization Reactions (1998)

To perform on-line monitoring of the absolute weight-averaged mass, Mw, of the polymers produced in a polymerization reaction, refractometer (RI), ultraviolet absorbance (UV), and time-dependent static light scattering (TDSLS) detectors were placed in series, and a diluted stream of reactant solution was made to flow through them. The technique allows rapid determination of time-dependent reaction “signatures” and end-product masses. Hence the effects of changing reaction conditions such as reactant concentrations, temperature, and initiators can be quickly assessed. Such a technique is expected to be of wide utility in characterizing polymerization reactions, both on the laboratory scale, where new polymers are synthesized and conditions optimized, as well as on the industrial scale, where on-line quality control can be performed. For stepwise reactions, the RI and TDSLS detectors are sufficient for determination of Mw, whereas for free radical reactions, the polymer concentration must be measured in order to obtain the traditionally defined Mw (i.e. without monomer taken into consideration). The latter was achieved for poly(vinyl pyrrolidinone) polymerization by measuring the monomer concentration with the UV detector. As a further measure of characterization, a single capillary viscometer was also placed in series with the other instruments. This allowed the reduced viscosity to be monitored simultaneously.
Faceted Search (2009)

We live in an information age that requires us, more than ever, to represent, access, and use information. Over the last several decades, we have developed a modern science and technology for information retrieval, relentlessly pursuing the vision of a memex that Vannevar Bush proposed in his seminal article, As We May Think. Faceted search plays a key role in this program. Faceted search addresses weaknesses of conventional search approaches and has emerged as a foundation for interactive information retrieval. User studies demonstrate that faceted search provides more effective information-seeking support to users than best-first search. Indeed, faceted search has become increasingly prevalent in online information access systems, particularly for e-commerce and site search. In this lecture, we explore the history, theory, and practice of faceted search. Although we cannot hope to be exhaustive, our aim is to provide sufficient depth and breadth to offer a useful resource to both researchers and practitioners. Because faceted search is an area of interest to computer scientists, information scientists, interface designers, and usability researchers, we do not assume that the reader is a specialist in any of these fields. Rather, we offer a self-contained treatment of the topic, with an extensive bibliography for those who would like to pursue particular aspects in more depth. Table of Contents: I. Key Concepts / Introduction: What Are Facets? / Information Retrieval / Faceted Information Retrieval / II. Research and Practice / Academic Research / Commercial Applications / III. Practical Concerns / Back-End Concerns / Front-End Concerns / Conclusion / Glossary
Pre-mRNA splicing and human disease (2003)

The precision and complexity of intron removal during pre-mRNA splicing still amazes even 26 years after the discovery that the coding information of metazoan genes is interrupted by introns (Berget et al. 1977; Chow et al. 1977). Adding to this amazement is the recent realization that most human genes express more than one mRNA by alternative splicing, a process by which functionally diverse protein isoforms can be expressed according to different regulatory programs. Given that the vast majority of human genes contain introns and that most pre-mRNAs undergo alternative splicing, it is not surprising that disruption of normal splicing patterns can cause or modify human disease. The purpose of this review is to highlight the different mechanisms by which disruption of pre-mRNA splicing play a role in human disease. Several excellent reviews provide detailed information on splicing and the regulation of splicing (Burge et al. 1999; Hastings and Krainer 2001; Black 2003). The potential role of splicing as a modifier of human disease has also recently been reviewed (NissimRafinia and Kerem 2002).