gebhart/patrepeval huggingface dataset:
[Juvenile laryngeal papillomatosis--a case report]. (1991)

Juvenile papillomatosis of the larynx is a disease of viral origin and is a rare cause of hoarseness and stridor in childhood. Although the tumours are basically benign, they may present problems in therapy due to their localisation and marked tendency to recur. According to the present state of knowledge, a combination of laser coagulation and alpha-interferon therapy is the treatment of choice. It can be applied on a long-term basis effectively and with few side effects due to individualised dosage determination. We report on a girl patient of 2 1/2 years of age with recurrent juvenile papillomatosis of the larynx. Long-term alpha-interferon therapy was so far successful in preventing progress of the pattern of findings. Treatment is well tolerated after the most suitable dose has been found for a particular patient. No side effects were seen that would have compelled us to discontinue the treatment. We are planning to continue interferon therapy for at least 1 to 2 years with regular endoscopic control.
Characterization and Crystallization of Soluble Human Fcγ Receptor II (CD32) Isoforms Produced in Insect Cells (1999)

Fc gamma RII (CD32), the receptor for the Fc part of IgG, is responsible for the clearance of immunocomplexes by macrophages and plays a role in the regulation of antibody production by B cells. To investigate the process of immunocomplex binding in terms of stoichiometry and stability of the Fc gamma RII:IgG complex, we produced both Fc gamma RII isoforms (Fc gamma RIIa and Fc gamma RIIb) as soluble proteins in insect cells. The expressed proteins could be purified in high yields and were biologically active as judged by their ability to bind IgG. Thus, the minor glycosylation performed by the insect cells is not crucial for the binding of the usually highly glycosylated Fc gamma RII to IgG. The dissociation constant of the sFc gamma RIIa:IgG-hFc complex was determined by fluorescence titration (KD = 2.5 x 10(-)7 M). Complementary sFc gamma RIIa antagonizes immunocomplex binding to B cells. Here sFc gamma RIIa showed a comparable dissociation constant (KD = 1.7 x 10(-)7 M) which was almost 10-fold lower than the constant for Fc gamma RIIb. The stoichiometry of the FcRIIa:IgG-hFc complex was determined by equilibrium gel filtration and shows that IgG is able to bind alternatively one or two Fc gamma RII molecules in a noncooperative manner. Furthermore, in an ELISA-based assay the isotype specificity of various anti-Fc gamma RII monoclonal antibodies was measured as well as their ability to interfere with the IgG recognition through its receptors. To further investigate the molecular basis of the Fc gamma RII-ligand interaction, we crystallized Fc gamma RIIb. Trigonal crystals diffracted to 3 A and the structure solution is in progress.
Comparison of three radiolabelled peptide analogues for CCK-2 receptor scintigraphy in medullary thyroid carcinoma (2009)

(99m)Tc-demogastrin 2 scintigraphy appeared most promising as a diagnostic tool in patients with MTC. Further studies are required to evaluate its value in patient management. Direct comparisons of the compounds studied strongly suggests that (111)In-DOTA-CCK and (111)In-DOTA-MG11 have less potential as imaging agents than (99m)Tc-demogastrin 2. These DOTA-linked compounds are considered unlikely to be useful for radionuclide therapy because of low tumour uptake.
NY-ESO-1 Expression and Immunogenicity in Esophageal Cancer (2004)

The high expression frequency of NY-ESO-1 mRNA and protein indicates NY-ESO-1 as a feasible vaccine target in esophageal cancer.
Conclusion (2011)

The conclusion addresses the tensions between autonomy as the resistance against various forms of power and self-governance as the necessary limitations of individual power. The examples examined in the book—adolescent sexuality, the drug war, animal rights, and endurance athletes—provide snapshots of how the norm of autonomy works in contingent, shifting ways with rather than against power. The characterization of the subject as subjectification is not a surrender of the self to relationships of power but a call to be self-critical, attentive to the ways in which the self is always constructed with a given context and cognizant of the fact that these relationships could be changed. If we view autonomy not as the end of political life but as a means, we may cultivate different ways of relating to ourselves and others.
Prostate Cancer Markers (1982)

According to the American Cancer Society, this year an estimated 57,000 new cases of prostate cancer (1979) will be diagnosed among American males (American Cancer Society, 1979). The Society also estimates that 20,000 lives will be lost to this form of cancer. One of the major reasons for this high mortality is that many cases are not detected until after metastases have occurred (Gittes and Chu, 1976). Therefore, markers that may serve as aids for early diagnosis of this disease and in monitoring the effectiveness of therapies have long been investigated. The purpose of this chapter is to review the prostate tumor markers that have been shown to be of significant value in diagnosis and treatment of this disease. It will include new information for old markers such as prostatic acid phosphatase, and data on new markers under investigation, such as prostate antigen. Other known markers that have been shown to be associated with cancer of the prostate are also described briefly.
2-D Protein Crystals as an Immobilization Matrix for Producing Reaction Zones in Dipstick-Style Immunoassays (1996)

In the present study, the applicability of crystalline bacterial cell-surface layers (S-layers) as novel immobilization matrices and reaction zones for dipstick-style immunoassays was investigated. For this purpose, S-layer-carrying cell-wall fragments from Bacillus sphaericus CCM 2120 were deposited on a microporous support, and the S-layer protein was cross-linked with glutaraldehyde. For developing appropriate test systems, either human IgG was directly linked to the carboxylic acid groups from the S-layer protein or it was immobilized using Protein A or, after biotinylation, using streptavidin. A clear correlation was obtained between the amount of anti-human IgG applied and the absorbance values in the immunoassays. S-layers with covalently bound recombinant major birch pollen allergen were used for quantitative and semiquantitative determination of an antibody raised against it. Using S-layers as an immobilization matrix in comparison to amorphous polymers has advantages in that the closed monolayers of functional macromolecules on their outermost surface allows for strong signals in immunoassays, almost completely eliminates background and prevents diffusion.
Refining the GIANT dynamic bandwidth allocation mechanism for XG-PON (2015)

XG-PON requires an effective dynamic bandwidth allocation (DBA) mechanism for upstream traffic to support quality of service for different classes of traffic. We propose X-GIANT, which extends GPON based GigaPON Access Network (GIANT) DBA, with validated optimisations to the originally proposed key parameters - service timers and assured vs non-assured ratio of medium priority traffic. We implement X-GIANT in a standard-compliant XG-PON module designed for the state-of-the-art ns-3 simulator, tune the above key parameters and show that mean-delay and throughput for different classes of traffic obey the XG-PON requirements and respect priorities at both light and heavy upstream loads. We also show that X-GIANT shows better mean-delay performance than Efficient Bandwidth Utilisation (EBU), a recently proposed, GIANT-derived, priority-based DBA mechanism for XG-PON, for all three classes of traffic simulated.
Choroidal neovascularization reduced by targeted drug delivery with cationic liposome-encapsulated paclitaxel or targeted photodynamic therapy with verteporfin encapsulated in cationic liposomes. (2013)

Systemic intravenous injection of paclitaxel (EndoTAG-1)- or succinyl-paclitaxel (LipoSPA)-loaded CL had a significant antiangiogenic effect in a CNV mouse model. PDT with CL-VTP was as effective as Visudyne in neovascular obliteration but induced less tissue damage. Our data suggest that systemic application of cationic liposome formulations may serve to treat ocular neovascular diseases. This approach may reduce the need for intraocular injections and may benefit patients with neovascular lesions irresponsive to anti-VEGF treatment.
An Exocyclic Methylene Group Acts As a Bioisostere of the 2′-Oxygen Atom in LNA (2010)

We show for the first time that it is possible to obtain LNA-like (Locked Nucleic Acid 1) binding affinity and biological activity with carbocyclic LNA (cLNA) analogs by replacing the 2'-oxygen atom in LNA with an exocyclic methylene group. Synthesis of the methylene-cLNA nucleoside was accomplished by an intramolecular cyclization reaction between a radical at the 2'-position and a propynyl group at the C-4' position. Only methylene-cLNA modified oligonucleotides showed similar thermal stability and mismatch discrimination properties for complementary nucleic acids as LNA. In contrast, the close structurally related methyl-cLNA analogs showed diminished hybridization properties. Analysis of crystal structures of cLNA modified self-complementary DNA decamer duplexes revealed that the methylene group participates in a tight interaction with a 2'-deoxyribose residue of the 5'-terminal G of a neighboring duplex, resulting in the formation of a CH...O type hydrogen bond. This indicates that the methylene group retains a negative polarization at the edge of the minor groove in the absence of a hydrophilic 2'-substituent and provides a rationale for the superior thermal stability of this modification. In animal experiments, methylene-cLNA antisense oligonucleotides (ASOs) showed similar in vivo activity but reduced toxicity as compared to LNA ASOs. Our work highlights the interchangeable role of oxygen and unsaturated moieties in nucleic acid structure and emphasizes greater use of this bioisostere to improve the properties of nucleic acids for therapeutic and diagnostic applications.
Spectral shaping for peak detection equalization (1990)

The authors describe an analytic approach to equalizer design for the peak-detection method based on equalizing the readback signal to a specific target signal whose choice depends upon the recording density. Suitable target signals are specified in the time and the frequency domain. The spectral shaping of the equalized channel is specified in terms of minimum bandwidth dibit or transition-response signals. The specification allows the use of computer-aided methods to determine the equalizer parameters. The application of the method to disk-drive systems in which the readback signal varies with radial position is also discussed.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Regulation of Absorption and ABC1-Mediated Efflux of Cholesterol by RXR Heterodimers (2000)

Several nuclear hormone receptors involved in lipid metabolism form obligate heterodimers with retinoid X receptors (RXRs) and are activated by RXR agonists such as rexinoids. Animals treated with rexinoids exhibited marked changes in cholesterol balance, including inhibition of cholesterol absorption and repressed bile acid synthesis. Studies with receptor-selective agonists revealed that oxysterol receptors (LXRs) and the bile acid receptor (FXR) are the RXR heterodimeric partners that mediate these effects by regulating expression of the reverse cholesterol transporter, ABC1, and the rate-limiting enzyme of bile acid synthesis, CYP7A1, respectively. Thus, these RXR heterodimers serve as key regulators of cholesterol homeostasis by governing reverse cholesterol transport from peripheral tissues, bile acid synthesis in liver, and cholesterol absorption in intestine.
The Rotary Motor of Bacterial Flagella (2003)

Flagellated bacteria, such as Escherichia coli, swim by rotating thin helical filaments, each driven at its base by a reversible rotary motor, powered by an ion flux. A motor is about 45 nm in diameter and is assembled from about 20 different kinds of parts. It develops maximum torque at stall but can spin several hundred Hz. Its direction of rotation is controlled by a sensory system that enables cells to accumulate in regions deemed more favorable. We know a great deal about motor structure, genetics, assembly, and function, but we do not really understand how it works. We need more crystal structures. All of this is reviewed, but the emphasis is on function.
A high-gain 60GHz power amplifier with 20dBm output power in 90nm CMOS (2010)

A fully integrated 60 GHz power amplifier using a standard 90 nm CMOS process is presented. The power amplifier consists of six 2-stage power amplifiers, three 2-way Wilkinson power splitters for parallel amplification, and three 2-way Wilkinson power combiners to combine the output power. The power amplifier achieves again of +20 dB, a P <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">1dB</sub> of +18 dBm and a P <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">sat</sub> of +20 dBm with 1.2 V supply.
Hypothermia effects microsensor measurement of tissue pH (2002)

pH monitoring during heart surgery requires temperature-correction of the sensor calibration constants to accurately measure tissue pH during hypothermic cardiac arrest. Polynomial regressions derived from sensor calibrations at different temperatures accurately described the relationship between pH and voltage output of the sensor. The error without temperature-correcting the sensor was as large as 0.3 pH units during in vivo measurements.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Synthesis and Dilute-Solution Behavior of Model Star-Branched Polymers (1978)

Abstract The occurrence of polymers branched in a random fashion is common. Chain transfer reactions can cause short- and long-chain branching in polymerizations such as the high-pressure polymerization of ethylene. Branching can also be introduced intentionally by the use of a polyfunctional monomer in end-linking polymerizations. Similar branching can be produced in addition polymerizations by the use of a small amount of difunctional monomer, e.g. , divinylbenzene. There also has been much interest in graft polymerization by which long chain branches can be introduced onto a backbone, which is often a different polymer from the branches. The properties of branched polymers can be quite different from those of linear polymers of the same molecular weight. For example, bulk viscosities as well as concentrated and dilute solution viscosities can be lower for branched polymers than for a linear material of equivalent molecular weight. As an example, the melt processing behavior of polymers can be manipulated by alterations in the average molecular weight, molecular weight distribution, and the frequency and length of long branches in the molecules. Thus, there is an obvious need to correlate and characterize the type and degree of branching in a polymer with its effect on the physical properties in solution or melt. In all of the above examples of branching, there is a mixture of branched and unbranched material. The unbranched and branched polymers can have a wide molecular weight distribution, as can the branches themselves. Also, the frequency of branches and the segment lengths between branch points can vary. Hence, the physical properties of such materials represent an average of the properties of all the different species present.
Protection of Chickens from Infectious Bronchitis by In Ovo and Intramuscular Vaccination with a DNA Vaccine Expressing the S1 Glycoprotein (2003)

We have constructed a DNA vaccine (pDKArkS1-DPI) expressing the S1 glycoprotein (Arkansas DPI) of infectious bronchitis virus (IBV) to examine protective immunity after in ovo and intramuscular DNA immunization. Birds receiving in ovo DNA followed by live virus vaccination at 2 wk of age were 100% protected from clinical disease. Birds receiving only live virus vaccine or only in ovo DNA vaccination were < or = 80% protected. IBV was detected up to 10 days postchallenge in unvaccinated control groups, whereas birds receiving in ovo DNA and live virus vaccination cleared IBV from tracheal samples before day 5 postchallenge. Transcription of the S1 gene was confirmed in lung tissue after in ovo vaccination by an antisense riboprobe, and the S1 protein was detected by immunohistology in the heart and bursa. In a separate experiment, birds were injected intramuscularly with either 50, 100, or 150 microg of the DNA vaccine at 1 day of age and then again with either 100, 200, or 300 microg of the DNA vaccine, respectively, at 14 days of age. At 10 days postchallenge, no clinical signs were observed and no challenge virus was reisolated from the birds vaccinated with 150 microg and 300 microg of DNA. Between DNA-vaccinated birds and nonvaccinated control birds, no statistical differences were observed for IBV-specific serum antibodies as detected by enzyme-linked immunosorbent assay or the virus neutralization test. These data indicate that DNA vaccination with the S1 gene either in ovo or intramuscularly can provide birds with some protection against clinical disease after homologous IBV challenge.
Single Nucleotide Polymorphism Analysis of aTrichoderma reeseiHyper-Cellulolytic Mutant Developed in Japan (2013)

The ascomycete Trichoderma reesei is known as one of the most prolific producers of plant biomass-degrading enzymes. While several mutant strains have been developed by mutagenesis to improve enzyme productivity for a variety of industrial applications, little is known about the mechanical basis of these improvements. A genomic sequence comparison of mutant and wild-type strains was undertaken to provide new insights in this regard. We identified a number of single-nucleotide polymorphisms (SNPs) after sequencing the genome of a hyper-cellulolytic T. reesei strain, PC-3-7, with a next-generation sequencer. Of these, the SNP detected in cre1, the carbon catabolite repressor gene, was found to be responsible for increased cellulase production. Further comparative genomic analysis enabled the identification of an SNP that correlated well with high cellulase production in a T. reesei mutant. These results provide a better understanding of the genetic changes induced by classical mutagenesis and how they correlate with desirable phenotypes in filamentous fungi.
Activation of Type II Cells into Regenerative Stem Cell Antigen-1+ Cells during Alveolar Repair (2014)

The alveolar epithelium is composed of two cell types: type I cells comprise 95% of the gas exchange surface area, whereas type II cells secrete surfactant, while retaining the ability to convert into type I cells to induce alveolar repair. Using lineage-tracing analyses in the mouse model of Pseudomonas aeruginosa-induced lung injury, we identified a population of stem cell antigen (Sca)-1-expressing type II cells with progenitor cell properties that mediate alveolar repair. These cells were shown to be distinct from previously reported Sca-1-expressing bronchioalveolar stem cells. Microarray and Wnt reporter studies showed that surfactant protein (Sp)-C(+)Sca-1(+) cells expressed Wnt signaling pathway genes, and inhibiting Wnt/β-catenin signaling prevented the regenerative function of Sp-C(+)Sca-1(+) cells in vitro. Thus, P. aeruginosa-mediated lung injury induces the generation of a Sca-1(+) subset of type II cells. The progenitor phenotype of the Sp-C(+)Sca-1(+) cells that mediates alveolar epithelial repair might involve Wnt signaling.
An Automata-Theoretic Approach to Automatic Program Verification (1986)

peer reviewed
Isolation of a cDNA clone for human X-linked 3-phosphoglycerate kinase by use of a mixture of synthetic oligodeoxyribonucleotides as a detection probe. (1983)

We have obtained a cDNA clone encoding most of human X-linked 3-phosphoglycerate kinase (PGK; ATP:3-phospho-D-glycerate 1-phosphotransferase, EC 2.7.2.3). Total mRNA was prepared from human adenocarcinoma-derived cell line LS174T and used for cDNA preparation. Double-stranded cDNA was inserted, after tailing with oligo(dC), into the plasmid vector pBR327 and cloned in Escherichia coli K-12. Transformants were screened by colony hybridization with a mixture of 32P-labeled oligodeoxyribonucleotides. A pool of hexadecamers complementary to all 32 possible sequences encoding amino acids 291-296 of X-linked PGK was used for the initial screen. One clone among 2,500 gave a strong positive signal. Plasmid DNA from this clone was purified and characterized by hybridization first to the hexadecamer probe mixture and then to an undecamer probe consisting of a mixture of four sequences. The cloned fragment hybridizes preferentially to DNA from human cells with five X chromosomes. DNA sequence analysis has established that the 1.2-kilobase-pair fragment encodes PGK from amino acid 121 through the COOH terminus.
A Compact Two-armed Slave Manipulator for Minimally Invasive Surgery of the Throat (2006)

This paper presents the design, simulation and evaluation of a two-armed compact slave robot being designed for minimally invasive surgery of the throat. This robot has two robotic surgical arms equipped with novel distal dexterity units that use novel miniature snake-like devices. The hybrid kinematic structure of this slave robot includes closed and serial kinematic chains and snake-like devices. Jacobian formulation and redundancy resolution are presented together with a suturing simulation that evaluates the joint motions for a circular suture. The results demonstrate the capability of this robot to perform suturing inside a deep and confined surgical field such as the throat
A folate receptor-targeted lipoplex delivering interleukin-15 gene for colon cancer immunotherapy (2016)

Interleukin-15 has been implicated as a promising cytokine for cancer immunotherapy, while folate receptor α (FRα) has been shown to be a potentially useful target for colon cancer therapy. Herein, we developed F-PLP/pIL15, a FRα-targeted lipoplex loading recombinant interleukin-15 plasmid (pIL15) and studied its antitumor effects in vivo using a CT26 colon cancer mouse model. Compared with control (normal saline) treatment, F-PLP/pIL15 significantly suppressed tumor growth in regard to tumor weight (P < 0.001) and reduced tumor nodule formation (P < 0.001). Moreover, when compared to other lipoplex-treated mice, F-PLP/pIL15-treated mice showed higher levels of IL15 secreted in the serum (P < 0.001) and ascites (P < 0.01). These results suggested that the targeted delivery of IL15 gene might be associated with its in vivo antitumor effects, which include inducing tumor cell apoptosis, inhibiting tumor proliferation and promoting the activation of immune cells such as T cells and natural killer cells. Furthermore, hematoxylin and eosin staining of vital organs following F-PLP/pIL15 treatment showed no detectable toxicity, thus indicating that intraperitoneal administration may be a viable route of delivery. Overall, these results suggest that F-PLP/pIL15 may serve as a potential targeting preparation for colon cancer therapy.