gebhart/patrepeval huggingface dataset:
A femtojoule calorimeter using micromechanical sensors (1994)

We describe a highly sensitive new type of calorimeter based on the deflection of a ‘‘bimetallic’’ micromechanical sensor as a function of temperature. The temperature changes can be due to ambient changes, giving a temperature sensor or, more importantly, due to the heat absorbed by a coating on the sensor, giving a heat sensor. As an example we show the results of using the sensor as a photothermal spectrometer. The small dimensions and low thermal mass of the sensor make it highly sensitive and we demonstrate a sensitivity of roughly 100 pW. By applying a simple model of the system the ultimate sensitivity is expected to be of the order of 10 pW. The thermal response time of the cantilever can also be determined, giving an estimate of the minimum detectable energy of the sensor. This we find to be 150 fJ and again from our model, expect a minimum value of the order of 20 fJ.
Changes in Outward K+ Currents in Response to Two Types of Sweeteners in Sweet Taste Transduction of Gerbil Taste Cells (1997)

Using the whole cell patch clamp technique, we measured changes in outward K+ currents of gerbil taste cells in response to different kinds of sweeteners. Outward K+ currents of the taste cell induced by depolarizing pulses were suppressed by sweet stimuli such as 10 mM Na-saccharin. The membrane-permeable analog of cAMP, cpt-cAMP, also decreased outward K+ currents. On the other hand, the K+ currents were enhanced by amino acid sweeteners such as 10 mM D-tryptophan. The outward K+ current was enhanced by external application of Ca(2+)-transporting ionophore, 5 microM ionomycin, and intracellular application of 5 microM inositol-1,4,5-trisphosphate (IP3). The outward K+ currents were no longer suppressed by 10 mM Na-saccharin containing 20 microM gurmarin, but were still enhanced by 10 mM D-tryptophan containing 20 microM gurmarin. These results suggest that sweet taste transduction for one group of sweeteners such as Na-saccharin in gerbils is concerned with an increase of the intracellular cAMP level, and that the transduction for the other group of sweeteners such as D-tryptophan is concerned with an increase of the intracellular IP3 level which releases Ca2+ from the internal stores.
Molecular evolution of the vertebrate immune system (1997)

Adaptive immunity is unique to the vertebrates, and the molecules involved (including immunoglobulins, T cell receptors and the major histocompatibility complex molecules) seem to have diversified very rapidly early in vertebrate history. Reconstruction of gene phylogenies has yielded insights into the evolutionary origin of a number of molecular systems, including the complement system and the major histocompatibility complex (MHC). These analyses have indicated that the C5 component of complement arose by gene duplication prior to the divergence of C3 and C4, which suggests that the alternative complement pathway was the first to evolve. In the case of the MHC, phylogenetic analysis supports the hypothesis that MHC class II molecules evolved before class I molecules. The fact that the MHC-linked proteasome components that specifically produce peptides for presentation by class I MHC appear to have originated before the separation of jawed and jawless vertebrates suggests that the MHC itself may have been present at this time. Immune system gene families have evolved by gene duplication, interlocus recombination and (in some cases) positive Darwinian selection favoring diversity at the amino acid level.
Designing the Magic Bullet? The Advancement of Immuno-PET into Clinical Use (2013)

The development of noninvasive imaging techniques using monoclonal antibodies (mAbs) is a quickly evolving field. Immuno-PET uses positron-emitting isotopes to track the localization of mAbs with excellent image quality. Procedures for labeling mAbs with (89)Zr or (124)I using good manufacturing procedures have been established, and therefore these radiopharmaceuticals are being investigated for clinical use. This short review will focus on immuno-PET with full mAbs using long-lived positron-emitting isotopes ((89)Zr and (124)I) over the past 5 y and discuss their progress into clinical use.
Glutathione S-transferase M1 gene polymorphism and susceptibility to endometriosis in a French population (1997)

Endometriosis is a multifactorial disease with possible genetic predisposition and involvement of environmental factors in its pathogenesis. The genetic polymorphism of glutathione S-transferase M1 (GSTM1) gene, which codes for glutathione S-transferase 1, class mu foreign compound conjugating enzyme of phase II detoxification system, was studied by polymerase chain reaction from the blood spots in patients with different stages of endometriosis (n = 50) and in controls (n = 72) of French origin. A total of 86.0% of patients appeared to lack GSTM1 enzyme activity due to the presence of an extended deletion (GSTM1 0/0 genotype), compared with 45.8% in a control group (P < 0.0001), which was consistent with the frequency of GSTM1 deletion in French population. Moreover, the distribution of GSTM1-active genotypes was significantly different in patients and controls (P < 0.0001), as no patient with GSTM1A/B genotype, which is correlated with the highest activity of GSTM1 enzyme, has been found so far (18.1% in a control group). The unusually high frequency of homozygotes for the GSTM1 gene deletion among patients with endometriosis suggests a possible contribution of environmental toxins in the pathogenesis of this disease due to the absence or low activity of GSTM1 enzyme.
Influences of Treatment Temperature and Water Content on Capacity and Rechargeability of V[sub 2]O[sub 5] Xerogel Films (2003)

xerogel films prepared with spray deposition have been investigated for their lithium battery applications. The influences of spray deposition and postannealing temperatures on the water content, structure, and electrochemical performance of the films have been studied. Water contents of the films depend on the deposition and postannealing temperatures. One film sprayed at 150°C and annealed at 190°C exhibited a large discharge capacity and the longest cycling life. By contrast, the films sprayed or annealed at high temperatures (>250°C) showed poor electrochemical performance. The film deposited at a substrate temperature of 420°C demonstrated structural features and electrochemical behavior of orthorhombic X-ray diffraction patterns of the films treated at different temperatures reveal that removal of too much water at high temperatures results in crystallization or a small interlayer spacing, which may restrict the diffusion of lithium ions inside films. solid-state nuclear magnetic resonance spectra show that the films annealed at low temperatures (i.e., 120°C or room temperature) have broad peaks and significant downfield isotropic chemical shifts, suggesting that the interlayered water produces a distorted square-pyramidal ligand field that may favor lithium intercalation and electron transfer within the matrix of the films. © 2003 The Electrochemical Society. All rights reserved.
The MspA porin promotes growth and increases antibiotic susceptibility of both Mycobacterium bovis BCG and Mycobacterium tuberculosis (2004)

Porins mediate the diffusion of hydrophilic solutes across the outer membrane of mycobacteria, but the efficiency of this pathway is very low compared to Gram-negative bacteria. To examine the importance of porins in slow-growing mycobacteria, the major porin MspA of Mycobacterium smegmatis was expressed in Mycobacterium tuberculosis and Mycobacterium bovis. Approximately 20 and 35 MspA molecules per microm(2) cell wall were observed in M. tuberculosis and M. bovis BCG, respectively, by electron microscopy and quantitative immunoblot experiments. Surface accessibility of MspA in M. tuberculosis was demonstrated by flow cytometry. Glucose uptake was twofold faster, indicating that the outer membrane permeability of M. bovis BCG to small and hydrophilic solutes was increased by MspA. This significantly accelerated the growth of M. bovis BCG, identifying very slow nutrient uptake as one of the determinants of slow growth in mycobacteria. The susceptibility of both M. bovis BCG and M. tuberculosis to zwitterionic beta-lactam antibiotics was substantially enhanced by MspA, decreasing the minimal inhibitory concentration up to 16-fold. Furthermore, M. tuberculosis became significantly more susceptible to isoniazid, ethambutol and streptomycin. Fluorescence with the nucleic acid binding dye SYTO 9 was 10-fold increased upon expression of mspA. These results indicated that MspA not only enhanced the efficiency of the porin pathway, but also that of pathways mediating access to large and/or hydrophobic agents. This study provides the first experimental evidence that porins are important for drug susceptibility of M. tuberculosis.
Dendritic Cells Generated Either from CD34+ Progenitor Cells or from Monocytes Differ in Their Ability to Activate Antigen-Specific CD8+ T Cells (1999)

Dendritic cells (DC) can be generated in vitro from monocytes (M-DC) or from CD34+ hemopoietic progenitor cells (CD34-DC) but their precursors are not equivalent cells, prompting a comparison of the functional capacities of these APC. Both types of DCs established from the same individuals using the same cytokines displayed a comparable phenotype of mature DC (CD1a+, CD83+, CD86+, CD4+, HLA-DR++, CD14-, CD15- ) and were equally potent stimulators of allogeneic T cell proliferation, being both more powerful than immature M-DCs. An autologous panel of APCs produced in HLA-A2+ individuals, including CD34-DC, M-DC, monocytes, and EBV-lymphoid cell line was comparatively evaluated for presentation of the Erb-B2 peptide E75 to a CTL line. After short exposures (5 h) to E75-loaded APCs, similar levels of intracellular IFN-gamma were induced in Ag-specific CD8+ T cells regardless of APC type. In sustained cultures (4-14 days), more Ag-specific T cells were obtained when peptide was presented on CD34-DC (p < 0.05) rather than on M-DC, EBV-lymphoid cell lines, or monocytes, and these effects were dose-dependent. Activated T cells expressed 4-1BB, and the presence of 4-1BB-Ig fusion protein partially blocked Ag-specific CD8+ cell activation after CD34-DC or M-DC presentation. Our results show that 34-DC have a preferential capacity to activate CD8+ T cells and that this property is not strictly correlated to their ability to induce allogeneic T cell proliferation but due to mechanisms that remain to be defined.
High-Resolution Ultrasound Elastography of Articular Cartilage in Vitro (2006)

Articular cartilage is comprised of three histologic zones that exhibit different Young's moduli. In addition, with age and disease the moduli can be altered. Therefore,diagnosis of joint diseases can be accomplished by detecting biomechanical properties of articular cartilage. In this report we investigate the feasibility of ultrasound elastography of bovine articular cartilage (n=5) employing instantaneous static compression using high-resolution (55MHz) ultrasound elastography in vitro as a potential arthroscopic technique. Elastograms were computed using cross-correlation technique and a gradient operator. The elastograms revealed near-zero strains within the samples, except at the articular surface and the interface between zones 1 and 2. The boundary conditions associated with the loading technique implemented herein that have to allow for a large acoustic window during imaging represent a fundamental challenge toward imparting local strains to the articular cartilage. Despite the complex boundary conditions, the feasibility of imaging strain within the cartilage during a sustained compression using elastographic techniques was demonstrated.
Development and implementation of a therapeutic hypothermia protocol (2009)

Two randomized controlled trials published in 2002 demonstrated that mild hypothermia induced after resuscitation from cardiac arrest decreased mortality and improved neurologic outcomes. Although therapeutic hypothermia is relatively easy to implement, side effects and special nursing considerations are associated with this therapy. This article discusses the process of developing and implementing a therapeutic hypothermia protocol. Patients resuscitated after cardiac arrest are cooled to 32 degrees C-34 degrees C for 12-24 hrs. Discussion highlights include patient selection, physiologic effects of hypothermia, routes of induction, nursing implications, protocol development and implementation, and review of current literature related to this topic. An established hypothermia protocol, order set, and education program can be successfully implemented in any institution providing standardized care of post-cardiac arrest patients.
Arquitectura orientada a servicios web para el desarrollo de instituciones de educación superior en Colombia (2003)

Tres grandes desafios que enfrenta la educacion superior colombiana en el presente milenio son: pertinencia, calidad e internacionalizacion. Indudablemente, estos tres requerimientos, tienen un soporte fundamental en las modernas Tecnologias de la Informacion, las Comunicaciones y la Gestion del Conocimiento (TICs & GC). En este documento, se muestra una arquitectura con varios niveles logicos plenamente orientada a servicios Web, en donde es posible realizar procesos de modernizacion al interior de las Instituciones de Educacion Superior colombianas, para asumir los retos planteados, mediante el uso intensivo de las tecnologias mencionadas.
Sensitive disk resonator photonic biosensor (2001)

We describe a photonic device based on a high-finesse, whispering-gallery-mode disk resonator that can be used for the detection of biological pathogens. This device operates by means of monitoring the change in transfer characteristics of the disk resonator when biological materials fall onto its active area. High sensitivity is achieved because the light wave interacts many times with each pathogen as a consequence of the resonant recirculation of light within the disk structure. Specificity of the detected substance can be achieved when a layer of antibodies or other binding material is deposited onto the active area of the resonator. Formulas are presented that allow the sensitivity of the device to be quantified and that show that, under optimum conditions, as few as 100 molecules can be detected.
Distributed space-time filtering for cooperative wireless networks (2004)

Significant performance gains can be leveraged in wireless networks by allowing the different nodes to cooperate. Cooperative transmission strategies attempt to realize the performance gains possible in multi-input multi-output (MIMO) fading channels by modeling the cooperating nodes as virtual antennas. However, in contrast to the point-to-point MIMO scenario, efficient cooperative schemes must address the distributed implementation challenge. For example, individual cooperating nodes may not be aware of their partners. We formulate the problem of maximizing the diversity advantage subject to the constraint of unknown message state information at the cooperating transmitter(s). We argue that our formulation can be used to model different relevant scenarios in wireless networks (e.g., fault tolerant applications, energy efficient sensor networks). In this setting, we propose a novel space-time filtering (STF) approach that achieves the optimal tradeoff between diversity advantage and receiver complexity. We further compare this approach with existing space-time coding approaches, highlighting the benefits of STF in the distributed implementation setting. Our arguments are supported by simulation results that demonstrate the performance gains possible with the proposed scheme in certain representative scenarios.
Leukaemia inhibitory factor receptor and gp130 in the human Fallopian tube and endometrium before and after mifepristone treatment and in the human preimplantation embryo (2007)

Leukaemia inhibitory factor (LIF) is a cytokine, which is associated with reproductive processes such as embryo development and implantation. The objectives of this study were to detect the presence of LIF receptor (LIFR) and glycoprotein 130 (gp 130) in the human Fallopian tube, endometrium and preimplantation embryo and to study the effect of mifepristone on the expression of LIFR and gp130 in the Fallopian tube. Twenty-two healthy fertile women received a single dose of 200 mg mifepristone or placebo immediately after ovulation (LH + 2). Biopsies were obtained from the Fallopian tubes during laparoscopic sterilization once between days LH + 4 and LH + 6 and from endometrium once between days LH + 6 and LH + 8. Preimplantation embryos were received from couples undergoing in vitro fertilization treatment. Immunohistochemistry was used to detect the presence of LIFR and gp130 in the Fallopian tube, endometrium and preimplantation embryo. Real-time PCR was used to study LIFR and gp130 expression in the Fallopian tube and endometrium. LIFR and gp130 were localized in the Fallopian tube, preimplantation embryo and endometrium. LIFR was more abundant in the Fallopian tube than in the endometrium. In the blastocyst, the staining of gp130 was mainly localized in the inner cell mass, whereas LIFR was expressed in all cells. The presence of LIFR and gp130 in the Fallopian tube and preimplantation embryo indicates a role for LIF in communication between the embryo and the Fallopian tube. Mifepristone did not affect the expression of LIFR and gp130 in the Fallopian tube, nor in the endometrium suggesting that progesterone might not be directly involved in the regulation of LIFR or gp130.
Genes and their organization in the replication origin region of the bacterial chromosome (1992)

Genes and their organization are conserved in the replication origin region of the bacterial chromosome. To determine the extent of the conserved region in Gram-positive and Gram-negative bacteria, which diverged 1.2 billion years ago, we have further sequenced the region upstream from the dnaA genes in Bacillus subtilis and Pseudomonas putida. Fifteen open reading frames (ORFs) and 11 ORFs were identified in the 13.6 kb and the 9.8 kb fragments in B. subtilis and P. putida, respectively. Eight consecutive P. putida genes, except for one small ORF (homologous to gene 9K of Escherichia coli) in between, are homologous in sequence and relative locations to genes in B. subtilis. Altogether, 12 genes and their organization are conserved in B. subtilis and P. putida in the origin region. We found that the conserved region terminated on one side after the orf290 in P. putida (orf282 in B. subtilis). In the B. subtilis chromosome, five additional ORFs were found in between the conserved genes, suggesting that they are added after Gram-positive bacteria were diverged from the Gram-negative bacteria. One of the ORFs is a duplicate of the conserved gene. The third non-translatable region containing multiple repeats of DnaA-box (second in the case of P. putida) was found flanking gidA in both organisms. This result shows clearly that E. coli oriC and flanking genes gidA and gidB have been translocated by the inversion of some 40 kb fragment.
Region-based Template Matching for Decoder-Side Motion Vector Derivation (2018)

In this paper, a region-based template matching method is proposed for decoder-side motion vector derivation. The proposed method is based on a template matching search algorithm, where the search window is partitioned into five regions and the index of the region to be searched is transmitted to the decoder. The final prediction signal is a linear combination of the blocks found through template matching from the given region. For a specific set of region sizes, the proposed inter method achieves an average Bjontegaard Delta bit rate gain of -3.15% for a random access configuration with 132% decoder and 201% encoder run-time respectively. The region sizes can be varied such that different trade-offs between coding gain and complexity can be obtained.
Measuring the outputs of crime reduction projects (2003)

This article argues that measures for project accountability and cost effectiveness generated by the Home Office's Policing and Crime Reduction Unit are ill-suited to capture the full complexity of project work over time. A new research tool is proposed - a Calendar of Action. This tool has the advantage of being more dynamic and it allows the recording of both quantitative and qualitative data. Its principal aims are to aid the modelling of project impact, the process of evaluation and the measurement of the intensity of action.
Lack of Interleukin-6/Glycoprotein 130/Signal Transducers and Activators of Transcription-3 Signaling in Hepatocytes Predisposes to Liver Steatosis and Injury in Mice (2009)

During CDE treatment mice lacking IL-6 and gp130-STAT signaling in hepatocytes are prone to hepatic metabolic changes and inflammation. This ultimately leads to progressive steatohepatitis with signs of liver remodeling. Thus, the presented model allows one to further dissect the role of IL-6/gp130-type signaling in hepatocytes during fatty liver degeneration to define new therapeutic targets in metabolic liver diseases.
A novel self-terminated Prins strategy for the synthesis of tetrahydropyran-4-one derivatives and their behaviour in Fisher indole synthesis (2016)

A novel self-terminated Prins strategy has been developed for the synthesis of 2-substituted tetrahydropyran-4-one derivatives through a condensation of 3-(phenylthio)but-3-en-1-ol with carbonyl compounds in the presence of 5 mol% of Sc(OTf)<sub>3</sub> under mild conditions.
B cell‐stimulating activity of lymphoid cell membrane fractions* (1988)

We had previously found that a mutagenized subline of the mouse thymoma EL4 very efficiently stimulates B cells via direct cell-cell contact, thereby inducing the responsiveness of B cells to cytokines. In the present study, we investigated whether this effect could also be mediated by plasma membranes of EL4 (and other) cells. By equilibrium centrifugation of cell homogenates, four cell membrane fractions of different densities were obtained. These were tested for (a) stimulation of B cell proliferation in conjunction with EL4 supernatant as source of cytokines, and (b) enhancement of B cell proliferation at suboptimal concentration of lipopolysaccharide. It turned out that all membrane fractions from a variety of T lineage cells (mutant EL4, parent EL4, BW5147, P198 thymomas, normal T cells) and B lineage cells (BCL1 lymphoma, X63Ag8 cytoplasma, normal B cells) exhibited similar B cell stimulating activity in both assays. Interleukin 1 activity was not detected in the membrane fractions. Heat treatment abolished all activity showing that protein at least was involved. Either protease treatment or extraction with detergent abolished the activity of subcellular fractions rich in intracellular membranes but not that of fractions most enriched in surface membranes. Finally, erythrocyte membranes also displayed B cell-stimulating activity sensitive to protease and detergent extraction. In contrast, and in confirmation of a previous study, liver cell membrane was inhibitory in the B cell proliferation assay with lipopolysaccharide. In conclusion, the effects of cell membranes did not reflect the unique activity of intact mutant EL4 cells. However, with respect to our data it is conceivable that membrane proteins with relatively nonspecific activity and wide distribution among lymphoid cells could play a role in T cell help together with molecules specialized in cell adhesion and cell triggering.