gebhart/patrepeval huggingface dataset:
Multi-class support vector machines: a new approach (2003)

We propose a new approach for solving multiclass problems with support vector machines. We modify the existing technique to properly reduce the empirical error, therefore we will be ideally able to outperform the previously proposed scheme for multi-class SVMs. The proposed approach also provides solutions with a significant reduction in the number of support vectors, which is an important feature for fast systems.
Effect of starch- and lipid-based encapsulation on the culturability of two Bifidobacterium longum strains (2007)

This study indicates that encapsulation techniques may be useful in improving the culturability of bacteria, but the plate counts may yield insufficient data on the actual viability of the cells.
Highly enantioselective and diastereoselective Ireland-Claisen rearrangement of achiral allylic esters (1991)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTHighly enantioselective and diastereoselective Ireland-Claisen rearrangement of achiral allylic estersE. J. Corey and Duck Hyung LeeCite this: J. Am. Chem. Soc. 1991, 113, 10, 4026–4028Publication Date (Print):May 1, 1991Publication History Published online1 May 2002Published inissue 1 May 1991https://pubs.acs.org/doi/10.1021/ja00010a074https://doi.org/10.1021/ja00010a074research-articleACS PublicationsRequest reuse permissionsArticle Views2645Altmetric-Citations134LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information Get e-Alerts
Tolerability and safety of oral neratinib (HKI-272) in Japanese patients with advanced solid tumors (2009)

e14505 Background: Neratinib (HKI-272) is a potent irreversible pan-ErbB tyrosine kinase inhibitor. In non-Japanese pts, neratinib was found to have clinical activity against solid tumors and dose-limiting toxicity (DLT) of diarrhea. The maximum tolerated dose (MTD) was 320 mg daily and the recommended dose (RD) was 240 mg because of the diarrhea. In this phase 1 study, the MTD was determined and safety and preliminary efficacy were assessed in Japanese pts with advanced solid tumors. Methods: Pts (3- 6/cohort) received 80, 160, 240, or 320 mg oral neratinib. Each pt participated in only 1 dose group and received single doses of neratinib followed by 1 wk of observation; pts then received daily continuous administration at the same dose. DLTs were assessed from the first single dose to the end of 14 days of continuous treatment. Pharmacokinetics (PK) will be analysed via a noncompartmental method. Tumor measurements were made at screening and at the end of every 8 weeks (2 cycles) by RECIST. Results: Preliminary data for 21 pts as of 30 Oct 2008 are presented. Pts had a median age [range] of 61 yrs [39–78], were 62% male, and had all received ≥2 prior chemotherapy regimens. Tumor types at primary diagnosis were advanced colorectal (81%), breast (14%), and gastric (5%) cancer. Median duration of neratinib treatment [range] was 10 wks [3–29].Two patients at the 320-mg dose had DLTs of diarrhea plus anorexia. Therefore the MTD was determined to be 240 mg. Neratinib-related AEs, any grade in ≥25% of pts included diarrhea (95%), fatigue (67%), anorexia (43%), nausea (43%), abdominal pain (38%), decreased hemoglobin (38%), increased AST (33%), and rash (29%). Neratinib-related AEs, grade ≥3 in ≥1 pts were anorexia (3 pts) and diarrhea (2 pts). Two pts had partial response (PR), 8 pts had stable disease (SD) ≥8 wks, 2 had SD≥16 wks, 9 had progressive disease. The 2 pts with PR had ErbB-2+ advanced breast cancer. PK analysis is still ongoing. Conclusions: In Japanese pts, the MTD for neratinb was determined to be 240 mg and the RD will be confirmed as 240 mg. Neratinib is tolerable and demonstrates preliminary antitumor activity in pts with solid tumors. [Table: see text]
Instruction flow-based front-end throttling for power-aware high-performance processors (2001)

Article Share on Instruction flow-based front-end throttling for power-aware high-performance processors Authors: Amirali Baniasadi Electrical and Computer Engineering, Northwestern University Electrical and Computer Engineering, Northwestern UniversityView Profile , Andreas Moshovos Electrical and Computer Engineering, University of Toronto Electrical and Computer Engineering, University of TorontoView Profile Authors Info & Claims ISLPED '01: Proceedings of the 2001 international symposium on Low power electronics and designAugust 2001Pages 16–21https://doi.org/10.1145/383082.383088Published:06 August 2001Publication History 55citation320DownloadsMetricsTotal Citations55Total Downloads320Last 12 Months14Last 6 weeks5 Get Citation AlertsNew Citation Alert added!This alert has been successfully added and will be sent to:You will be notified whenever a record that you have chosen has been cited.To manage your alert preferences, click on the button below.Manage my AlertsNew Citation Alert!Please log in to your account Save to BinderSave to BinderCreate a New BinderNameCancelCreateExport CitationPublisher SiteGet Access
Protective T cell immunity in mice following protein-TLR7/8 agonist-conjugate immunization requires aggregation, type I IFN, and multiple DC subsets (2011)

The success of a non-live vaccine requires improved formulation and adjuvant selection to generate robust T cell immunity following immunization. Here, using protein linked to a TLR7/8 agonist (conjugate vaccine), we investigated the functional properties of vaccine formulation, the cytokines, and the DC subsets required to induce protective multifunctional T cell immunity in vivo. The conjugate vaccine required aggregation of the protein to elicit potent Th1 CD4+ and CD8+ T cell responses. Remarkably, the conjugate vaccine, through aggregation of the protein and activation of TLR7 in vivo, led to an influx of migratory DCs to the LN and increased antigen uptake by several resident and migratory DC subsets, with the latter effect strongly influenced by vaccine-induced type I IFN. Ex vivo migratory CD8-DEC205+CD103-CD326- langerin-negative dermal DCs were as potent in cross-presenting antigen to naive CD8+ T cells as CD11c+CD8+ DCs. Moreover, these cells also influenced Th1 CD4+ T cell priming. In summary, we propose a model in which broad-based T cell-mediated responses upon vaccination can be maximized by codelivery of aggregated protein and TLR7/8 agonist, which together promote optimal antigen acquisition and presentation by multiple DC subsets in the context of critical proinflammatory cytokines.
Pharmacodynamic and Pharmacokinetic Characterization of Interactions between Levetiracetam and Numerous Antiepileptic Drugs in the Mouse Maximal Electroshock Seizure Model: An Isobolographic Analysis (2006)

These preclinical data would suggest that LEV in combination with TPM is associated with beneficial anticonvulsant pharmacodynamic interactions. Similar, but less profound effects were seen with OXC and CBZ.
MurA (MurZ), the enzyme that catalyzes the first committed step in peptidoglycan biosynthesis, is essential in Escherichia coli (1995)

The Escherichia coli gene murZ was recently shown to encode UDP-N-acetylglucosamine enolpyruvyl transferase, which catalyzes the first committed step of peptidoglycan biosynthesis (J. L. Marquardt, D. A. Siegele, R. Kolter, and C. T. Walsh, J. Bacteriol. 174:5748-5752, 1992). The map position of murZ (69.3 min) differed from that determined for murA (90 min), a gene which had been previously proposed to encode the same activity (P.S. Venkateswaran and H. C. Wu, J. Bacteriol. 110:935-944, 1972). Here we describe the construction of a chromosomal deletion of murZ and a plasmid containing murZ under arabinose control. Growth of cells containing the murZ deletion was dependent on the expression of murZ from the plasmid. We conclude that murZ is an essential gene and encodes the sole UDP-N-acetylglucosamine enolpyruvyl transferase of E. coli. To simplify the nomenclature, we recommend that murA be used to designate the gene at 69.3 min that encodes this activity and that the designation murZ be abandoned.
Filtering spoofed traffic at source end for defending against DoS / DDoS attacks (2008)

Tackling the challenge of distinguishing legitimate traffic from attack would aid in the detection of denial of service (DoS) / distributed DoS (DDoS) attacks. Spoofing of source address would further harden the detection of such attacks. In this paper, we propose a flow based scheme to detect the DoS attacks that adapts itself to the changes trends of the current traffic. The proposed system weeds out most of the spurious traffic at the source end, thus avoiding clogging of the target and the network. The proposed scheme distinguishes itself from other source end defenses, which use statistics to gather profiles. Information entropy, a measure to find correlation among traffic flows, is then used. Information entropy is used to deduce the current state of the dynamic network. Since the volume of the traffic at the source end would be moderate, it would be difficult to find the suspicious traffic at the source end. We found that the parameters we considered were good in identifying such traffic. We experimented our scheme using network simulator with network traffic traces and found the results were promising and presented them.
Kinetic and Reaction Mechanism of CO2 Sorption on Li4SiO4:  Study of the Particle Size Effect (2007)

Lithium orthosilicate (Li4SiO4) was synthesized by three different techniques: the solid-state reaction, precipitation, and sol−gel (using a microwave oven) methods. The better results were obtained by the two first methods. In the third case, pure Li4SiO4 could not be obtained, because the microwaves produced the lithium sublimation. The samples were characterized by X-ray diffraction, scanning electron microscopy, N2 adsorption, and thermogravimetric analysis under a flux of CO2. Different particles sizes were obtained as a function of the method of synthesis, and the CO2 sorption analyses gave different results. The particle size modified the stability of the Li4SiO4 during the CO2 sorption/desorption cycles, due to lithium sublimation, as Li2O. Conversely, the isothermal study allowed measuring the kinetic parameters for the chemisorption and diffusion processes, as a function of the particle size. As could be expected, the activation energies obtained, for the small particles, were smaller than those obtained for the large particles. These results were explained in terms of reactivity, for the chemisorption process, and in terms of geometry, for the diffusion process.
Bimolecular Electron Transfers That Follow a Sandros−Boltzmann Dependence on Free Energy (2011)

Rate constants (k) for exergonic and endergonic electron-transfer reactions of equilibrating radical cations (A(•+) + B ⇌ A + B(•+)) in acetonitrile could be fit well by a simple Sandros-Boltzmann (SB) function of the reaction free energy (ΔG) having a plateau with a limiting rate constant k(lim) in the exergonic region, followed, near the thermoneutral point, by a steep drop in log k vs ΔG with a slope of 1/RT. Similar behavior was observed for another charge shift reaction, the electron-transfer quenching of excited pyrylium cations (P(+)*) by neutral donors (P(+)* + D → P(•) + D(•+)). In this case, SB dependence was observed when the logarithm of the quenching constant (log k(q)) was plotted vs ΔG + s, where the shift term, s, equals +0.08 eV and ΔG is the free energy change for the net reaction (E(redox) - E(excit)). The shift term is attributed to partial desolvation of the radical cation in the product encounter pair (P(•)/D(•+)), which raises its free energy relative to the free species. Remarkably, electron-transfer quenching of neutral reactants (A* + D → A(•-) + D(•+)) using excited cyanoaromatic acceptors and aromatic hydrocarbon donors was also found to follow an SB dependence of log k(q) on ΔG, with a positive s, +0.06 eV. This positive shift contrasts with the long-accepted prediction of a negative value, -0.06 eV, for the free energy of an A(•-)/D(•+) encounter pair relative to the free radical ions. That prediction incorporated only a Coulombic stabilization of the A(•-)/D(•+) encounter pair relative to the free radical ions. In contrast, the results presented here show that the positive value of s indicates a decrease in solvent stabilization of the A(•-)/D(•+) encounter pair, which outweighs Coulombic stabilization in acetonitrile. These quenching reactions are proposed to proceed via rapidly interconverting encounter pairs with an exciplex as intermediate, A*/D ⇌ exciplex ⇌ A(•-)/D(•+). Weak exciplex fluorescence was observed in each case. For several reactions in the endergonic region, rate constants for the reversible formation and decay of the exciplexes were determined using time-correlated single-photon counting. The quenching constants derived from the transient kinetics agreed well with those from the conventional Stern-Volmer plots. For excited-state electron-transfer processes, caution is required in correlating quenching constants vs reaction free energies when ΔG exceeds ∼+0.1 eV. Beyond this point, additional exciplex deactivation pathways-fluorescence, intersystem crossing, and nonradiative decay-are likely to dominate, resulting in a change in mechanism.
Charge-Transfer Excitations Steer the Davydov Splitting and Mediate Singlet Exciton Fission in Pentacene (2013)

Quantum-chemical calculations are combined to a model Frenkel-Holstein Hamiltonian to assess the nature of the lowest electronic excitations in the pentacene crystal. We show that an admixture of charge-transfer excitations into the lowest singlet excited states form the origin of the Davydov splitting and mediate instantaneous singlet exciton fission by direct optical excitation of coherently coupled single and double exciton states, in agreement with recent experiments.
Domain Name System Security Extensions (1997)

The Domain Name System (DNS) has become a critical operational part of the Internet infrastructure yet it has no strong security mechanisms to assure data integrity or authentication. Extensions to the DNS are described that provide these services to security aware resolvers or applications through the use of cryptographic digital signatures. These digital signatures are included in secured zones as resource records. Security can still be provided even through non-security aware DNS servers in many cases.
Acceptor specificity and tissue distribution of three human α‐3‐fucosyltransferases (1990)

Based on the capacity to transfer alpha-L-fucose onto type-1 and type-2 synthetic blood group H and sialylated acceptors, a comparison of the alpha-3-fucosyltransferase activities of different human tissues is shown. Three distinct acceptor specificity patterns are described: (I) myeloid alpha-3-fucosyltransferase pattern, in which leukocytes and brain enzymes transfer fucose actively onto H type-2 acceptor and poorly onto sialylated N-acetyllactosamine: (II) plasma alpha-3-fucosyltransferase (EC 2.4.1.152), in which plasma and hepatocyte enzymes transfer, in addition, onto the sialylated N-acetyllactosamine; (III) Lewis alpha-3 4-fucosyltransferase (EC 2.4.1.65), in which gall-bladder kidney and milk enzymes transfer, in addition, onto type-1 acceptors. The small amount (less than 10%) of alpha-3-fucosyltransferase activity found in the plasma of an alpha-3-fucosyltransferase-deficient individual had a myeloid-type acceptor pattern, suggesting that this small proportion of the plasma enzyme is derived from leukocytes. In addition to the three acceptor specificity patterns, these enzyme activities can be differentiated by their optimum pH: 8.0-8.7 for the enzymes from myeloid cells and brain. 7.2-8.0 for liver enzymes and 6.0-7.2 for gallbladder enzymes. Milk samples had two alpha-3-fucosyltransferase activities, the Lewis or alpha-3/4-fucosyltransferase under control of the Lewis gene and an alpha-3-fucosyltransferase with plasma acceptor pattern which was independent of the control of the Lewis gene. The apparent affinity for GDP-fucose of the myeloid-like enzyme was weaker than those of the plasma and Lewis-like enzymes. The apparent affinities for H type 2 and sialylated N-acetyllactosamine were stronger for exocrine secretions as compared to the plasma and myeloid enzymes. The plasma type of alpha-3-fucosyltransferase activity was more sensitive to N-ethylmaleimide and heat inactivation than the samples with myeloid-like alpha-3-fucosyltransferase activity.
Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase (2003)

The expression of activation-induced cytidine deaminase (AID) is prerequisite to a "trifecta" of key molecular events in B cells: class-switch recombination and somatic hypermutation in humans and mice and gene conversion in chickens. Although this critically important enzyme shares common sequence motifs with apolipoprotein B mRNA-editing enzyme, and exhibits deaminase activity on free deoxycytidine in solution, it has not been shown to act on either RNA or DNA. Recent mutagenesis data in Escherichia coli suggest that AID may deaminate dC on DNA, but its putative biochemical activities on either DNA or RNA remained a mystery. Here, we show that AID catalyzes deamination of dC residues on single-stranded DNA in vitro but not on double-stranded DNA, RNA-DNA hybrids, or RNA. Remarkably, it has no measurable deaminase activity on single-stranded DNA unless pretreated with RNase to remove inhibitory RNA bound to AID. AID catalyzes dC --> dU deamination activity most avidly on double-stranded DNA substrates containing a small "transcription-like" single-stranded DNA bubble, suggesting a targeting mechanism for this enigmatic enzyme during somatic hypermutation.
Socio-Economic and Psychological Impacts of Covid-19: A Case Study of Quarantined Village Ziarat Talash in Dir Lower, Pakistan (2020)

The global outbreak of coronavirus is conclusively attributed to the direct contacts and social interactions of individuals with one another. Because of the fatal nature of the virus and man being the major host for the virus, scientists have embarked upon/ intimidated people to practice social distancing so that the further spreading of the virus may be stopped. Such social distancing, including self-isolation, restriction of movement, lockdown, and quarantine has brought enormous social disruption in the lives of people. This paper aims to explore the social, psychological, and economic impacts of social distancing on the lives of the inhabitants in a quarantined village Ziarat Talash in District Dir Lower, Khyber Pakhtunkhwa Province of Pakistan. For this purpose, 08 potential respondents in the mentioned village were purposively selected and their views were taken through in-depth interviewing. The collected data was analysed and the interviews were clubbed into three major themes including social, psychological, and economic impacts of self-isolation and quarantined life in the targeted locale of the study. It is concluded that self-isolation and social distancing through quarantine has seriously disrupted the social, economic, and psychological aspects of the inhabitants in the area.
Genome‐wide DNA methylation patterns in pancreatic ductal adenocarcinoma reveal epigenetic deregulation of SLIT‐ROBO, ITGA2 and MET signaling (2014)

The importance of epigenetic modifications such as DNA methylation in tumorigenesis is increasingly being appreciated. To define the genome-wide pattern of DNA methylation in pancreatic ductal adenocarcinomas (PDAC), we captured the methylation profiles of 167 untreated resected PDACs and compared them to a panel of 29 adjacent nontransformed pancreata using high-density arrays. A total of 11,634 CpG sites associated with 3,522 genes were significantly differentially methylated (DM) in PDAC and were capable of segregating PDAC from non-malignant pancreas, regardless of tumor cellularity. As expected, PDAC hypermethylation was most prevalent in the 5' region of genes (including the proximal promoter, 5'UTR and CpG islands). Approximately 33% DM genes showed significant inverse correlation with mRNA expression levels. Pathway analysis revealed an enrichment of aberrantly methylated genes involved in key molecular mechanisms important to PDAC: TGF-β, WNT, integrin signaling, cell adhesion, stellate cell activation and axon guidance. Given the recent discovery that SLIT-ROBO mutations play a clinically important role in PDAC, the role of epigenetic perturbation of axon guidance was pursued in more detail. Bisulfite amplicon deep sequencing and qRT-PCR expression analyses confirmed recurrent perturbation of axon guidance pathway genes SLIT2, SLIT3, ROBO1, ROBO3, ITGA2 and MET and suggests epigenetic suppression of SLIT-ROBO signaling and up-regulation of MET and ITGA2 expression. Hypomethylation of MET and ITGA2 correlated with high gene expression, which was associated with poor survival. These data suggest that aberrant methylation plays an important role in pancreatic carcinogenesis affecting core signaling pathways with potential implications for the disease pathophysiology and therapy.
Brain and muscle nicotinic acetylcholine receptors are different but homologous proteins. (1985)

An alpha-bungarotoxin-binding protein was purified from chick optic lobe and brain by an improved method. Previous and present observations justify its designation as a brain nicotinic acetylcholine receptor (AcChoR). It contains subunits whose apparent molecular weights are somewhat larger than those of subunits of peripheral AcChoRs. The size of the optic lobe AcChoR complex is greater than that of the peripheral receptor when estimated from its sedimentation behavior. Brain AcChoR subunits can be specifically precipitated by a monoclonal antibody directed against chick muscle AcChoR. Amino-terminal amino acid sequence analysis was performed on AcChoR preparations and isolated subunits from the optic lobe and from the rest of the chick brain. The sequences obtained demonstrate that, at least for the lowest molecular weight component, the AcChoRs from different brain areas are identical and they are highly homologous to muscle AcChoR. It is concluded that the brain alpha-bungarotoxin-binding protein is indeed a nicotinic AcChoR and is encoded by a set of genes that is different from, but strongly related to, that for the muscle AcChoR.
On the efficiency of RF-Pilot-based nonlinearity compensation for CO-OFDM (2011)

We investigate the efficiency of RF-pilot based phase noise compensation for mitigation of nonlinear impairments in CO-OFDM transmission. We show that the efficiency scales with the effective dispersion difference between the nonlinear regions.