gebhart/patrepeval huggingface dataset:
Composition of the positive column of a helium glow discharge at intermediate pressures (1979)

The composition of the plasma on the axis of the positive column of a helium glow discharge is investigated. Four rate equations for the concentration of atomic and molecular ions and metastables can be written. For conditions of gas pressure between 5 and 40 Torr and currents between 10 mA and 200 mA, the equations can be simplified and solved. Rate coefficients for different processes were taken from afterglow measurements. Rates of excitation to the metastable level 23S and of step ionisation were calculated. The distribution at energies epsilon lower than the excitation energy epsilon 1 of level 23S is near maxwellian with a temperature Te, while for epsilon > epsilon 1 it decreases much faster. The relative number of atomic ions is maximal at the pressure p=5 Torr, increases with current and decreases with pressure. At the pressure p=5 Torr and currents i>or=100 mA practically all ions are atomic. The proportion of molecular ions decreases with current and increases with pressure. At the pressure p=40 Torr and currents i<or=40 mA practically all ions are molecular.
Binding of diamine oxidase activity to rat and guinea pig microvascular endothelial cells. Comparisons with lipoprotein lipase binding. (1985)

Microvascular endothelial cells from rat and guinea pig fat pads were shown to bind diamine oxidase (DAO) activity when incubated with soluble extracts of placenta (33 DAO U/mg of placenta) and a purified placental enzyme preparation (94 U/micrograms of protein). The extent of binding was dependent on the concentration of enzyme activity and tissue. Saturation of binding sites with 5,000 U of DAO/ml resulted in levels of bound activity (up to 11-13 U/mg of endothelial cells) in excess of that observed in all tissues except placenta. Scatchard plots suggested that there were at least two DAO binding sites (apparent Km 92 and 2,450 U/ml). Although the same cell preparations bound 125I-labeled lipoprotein lipase (LPL), the presence of LPL on the endothelial cell surface did not interfere with the binding of DAO activity except when cells were exposed to high concentrations of LPL. Alternatively, bound DAO activity was partially displaced (up to 33%) only with high concentrations (30 micrograms/ml) of LPL. DAO activity may thus be bound to at least two populations of sites, one of which may bind LPL. Both enzymes, however, were displaced by heparin (0.05-5 U/ml) and DAO binding was impaired by prior treatment of cells with proteolytic and glycosaminoglycandegrading enzymes. The demonstration of DAO binding to vascular endothelial cells provides a further example of the ability of these cells to bind enzymes at their surface and thereby act on biologically active substances in the circulation.
THE CONDENSATION OF CERTAIN γ-KETONIC ESTERS WITH AROMATIC ALDEHYDES (1932)

The condensation of methyl and ethyl α-phenyl-β-(para-substituted)benzoyl propionates with benzaldehyde and piperonal in the presence of sodium methylate, followed by acidification, has been found to produce cyclic compounds; the latter are shown to be lactols, six of which are described. The spontaneous ring closure is probably due to the highly branched chain. A mechanism for the reaction is proposed.On oxidation with chromic acid, α-diketones are formed; the latter contain the aryl group introduced as aldehyde. The lactols resemble triphenylcarbinol in several respects, forming a chloride, methyl ether, and acetate on appropriate treatment, all of which, on hydrolysis, regenerate the lactol. They also give colored solutions with concentrated sulphuric acid, from which the starting material is recovered on addition to water. From this work it is evident that in arylated γ-ketonic esters the hydrogen atom alpha to the ketone carbonyl group is more active in alkaline aldol condensations than the hydrogen in the alpha position to the carbalkoxy carbonyl group; the observation of others, that the conjugated system [Formula: see text] is more stable than [Formula: see text], has been confirmed.
Internet Economics: What Happens When Constituencies Collide? (1995)

This paper describes the emerging field of Internet Economics and some of the constituencies which are shaping it. It defines the motivating factors for looking at this area, reviews some recent research results, and explores areas of overlapping interest. The paper concludes with six recommendations for further work. different academic disciplines which have done work related to Internet economics: technology, economics, and policy. Each of these areas has important contributions to make to the field but there has been little consensus across disciplines (or even within disciplines) on which direction to take. Figure 1 shows a Venn diagram which tries to characterize the constituencies' current motivation to look at Internet economics.
Relaxin Promotes Prostate Cancer Progression (2007)

Relaxin signaling plays a role in prostate cancer progression.
Caltech-UCSD Birds-200-2011 Dataset (2024)

CUB-200-2011 is an extended version of CUB-200 [7], a challenging dataset of 200 bird species. The extended version roughly doubles the number of images per category and adds new part localization annotations. All images are annotated with bounding boxes, part locations, and at- tribute labels. Images and annotations were filtered by mul- tiple users of Mechanical Turk. We introduce benchmarks and baseline experiments for multi-class categorization and part localization.
A major histocompatibility complex class I–dependent subset of memory phenotype CD8+ cells (2006)

Most memory phenotype (MP) CD44(hi) CD8(+) cells are resting interleukin (IL)-15-dependent cells characterized by high expression of the IL-2/IL-15 receptor beta (CD122). However, some MP CD8(+) cells have a CD122(lo) phenotype and are IL-15 independent. Here, evidence is presented that the CD122(lo) subset of MP CD8(+) cells is controlled largely by major histocompatibility complex (MHC) class I molecules. Many of these cells display surface markers typical of recently activated T cells (CD62L(lo), CD69(hi), CD43(hi), and CD127(lo)) and show a high rate of background proliferation. Cells with this phenotype are highly enriched in common gamma chain-deficient mice and absent from MHC-I(-/-) mice. Unlike CD122(hi) CD8(+) cells, CD122(lo) MP CD8(+) cells survive poorly after transfer to MHC-I(-/-) hosts and cease to proliferate. Although distinctly different from typical antigen-specific memory cells, CD122(lo) MP CD8(+) cells closely resemble the antigen-dependent memory CD8(+) cells found in chronic viral infections.
BRAF, a target in melanoma (2010)

The successful translation of therapies targeting signal-transduction pathways that are activated by oncogenes has provided a model for molecularly targeted therapy, and the identification of mutations in v-raf murine sarcoma viral oncogene homolog B1 (BRAF), a serine/threonine kinase, has turned the attention of the melanoma field toward this concept. The current review indicated that BRAF represents an important target in cancer, in part because it is present in 7% of all cancers and also because it represents the first intracellular signaling molecule that is activated by point mutations for which single-agent therapy appears to have efficacy. Therapy for advanced melanoma has progressed slowly over the past 3 decades, although significant advances have been made in other cancers with the application of cytotoxic chemotherapy and targeted therapies. However, in melanoma, cytotoxic chemotherapies have severe limits, chemotherapy does not convincingly improve on the natural history of metastatic disease and has no role in the adjuvant setting, and cytokine therapy may have a niche in both the adjuvant and metastatic settings but confers only a modest benefit to a small proportion of patients at the cost of severe toxicity. Thus, there are few other cancers in which completely novel therapies are so highly prioritized in clinical research. Understanding network of signal-transduction pathways and how that network may adapt to BRAF inhibition or mitogen-activated protein kinase kinase inhibition will point to the next generation of clinical trials investigating rational combination regimens. The current investigations in melanoma will create a set of hypotheses to be tested in each cancer that harbors BRAF mutations.
A comparison of the inhibition of porcine pancreatic elastase and human neutrophil elastase by alpha-crystallin (1994)

Bovine lens alpha-crystallin inhibited both porcine pancreatic elastase (PPE) and human neutrophil elastase (HNE), but not in the same manner. PPE was immediately inhibited with a stoichiometry of 10 moles of PPE inhibited per mole of alpha-crystallin. The inhibition was markedly decreased by the addition of even low levels of salts. The inhibition was transient, as PPE activity returned to normal with a t1/2 of 30 min even in low salt. HNE required a short preincubation to show maximum inhibition with a stoichiometry of approximately one mole of HNE inhibited per mole of alpha-crystallin. The inhibition of HNE was only slightly decreased by the addition of 0.1 M salt, and HNE activity returned slowly exhibiting a t1/2 of 30 hrs under these conditions. The inhibition of each enzyme by alpha-crystallin was evaluated by Dixon plots giving Ki values of 1.5 nM for PPE and 0.25 nM for HNE. DFP-trypsin was able to compete with PPE for binding to alpha-crystallin and cause the release of PPE already bound to alpha-crystallin. The inhibition of HNE, however, was unaffected by the addition of DFP-trypsin. A mixture of HNE and alpha-crystallin in 0.1 M NaCl was incubated at 25 degrees C for 6 hours. Aliquots showed a slow, continuous cleavage of the alpha-crystallin subunits by SDS-PAGE, but little or no increase in HNE activity.(ABSTRACT TRUNCATED AT 250 WORDS)
Induction of Systemic Resistance of Cucumber toColletotrichum orbiculareby Select Strains of Plant Growth-Promoting Rhizobacteria (1991)

Ninety-four strains of plant growth-promoting rhizobacteria (PGPR) were screened for induction of systemic resistance using a model system of cucumber and anthracnose, caused by Colletotrichum orbiculare. Compared with a nonbacterized, challenged control, treatment of cucumber seeds with six PGPR strains resulted in a significant reduction in lesion size after challenge-inoculation with C. orbiculare. Four of the six PGPR strains that induced resistance in cucumber produced HCN in vitro. Antagonism in vitro toward Pythium ultimum, Rhizoctonia solani, and C. orbiculare on three media generally was absent with five PGPR strains and weak with one strain. Rifampicin-resistant mutants of the PGPR strains colonized roots at mean population densities of log 6.5 to 8.3 cfu g(-1) of root at 7 days after planting and log 4.1 to 6.1 cfu g(-1) at 21 days after planting. None of the strains was recovered from surface-disinfested petioles on the day of challenge with C. orbiculare. Roots from plants bacterized with PGPR strains showed less necrosis than the nonbacterized, challenged control. The results support the conclusion that some PGPR strains applied to seed can induce systemic resistance to C. orbiculare
Cooperative MIMO in wireless networks: recent developments and challenges (2013)

Cooperative multiple-input multiple-output (CMIMO) is a form of cooperative communications. CMIMO emulates the functionality of multi-antenna systems by grouping wireless devices to operate as virtual multi-antenna nodes. Its main objectives are to boost network throughput, conserve energy, and improve network coverage. In this article, we discuss recent applications of CMIMO in contemporary wireless networks, including wireless sensor, mobile ad hoc, wireless LAN, cognitive, and cellular networks. We first review CMIMO techniques at the physical layer. We then focus on state-of-the-art approaches for realizing CMIMO at the network layer, and classify these approaches based on their objectives and application scenarios, and how they exploit CMIMO gains. We highlight several open issues that present challenges to practical deployment of CMIMO.
Validation of Interobserver Agreement in Lung Cancer Assessment: Hematoxylin-Eosin Diagnostic Reproducibility for Non–Small Cell Lung Cancer: The 2004 World Health Organization Classification and Therapeutically Relevant Subsets (2012)

These data define the baseline diagnostic agreement for hematoxylin-eosin diagnosis of non-small cell lung carcinoma, allowing future studies to test for improved diagnostic agreement with reflex ancillary tests.
Identification and Characterization of the Fifth Membrane-type Matrix Metalloproteinase MT5-MMP (1999)

A new member of the membrane-type matrix metalloproteinase (MT-MMP) subfamily tentatively named MT5-MMP was isolated from mouse brain cDNA library. It is predicted to contain (i) a candidate signal sequence, (ii) a propeptide region with the highly conserved PRCGVPD sequence, (iii) a potential furin recognition motif RRRRNKR, (iv) a zinc-binding catalytic domain, (v) a hemopexin-like domain, (vi) a 24-residue hydrophobic domain as a potential transmembrane domain, and (vii) a short cytosolic domain. Reverse transcriptase-polymerase chain reaction analysis of its transcripts indicates that MT5-MMP is expressed in a brain-specific manner consistent with the origin of its EST clone from cerebellum. It is also highly expressed during embryonic development at stages day 11 and 15. Like other MT-MMPs, MT5-MMP specifically activates progelatinase A when co-expressed in Madin-Darby canine kidney cells. Its ability to activate progelatinase A is dependent on its proteolytic activity since a mutation converting Glu to Ala in the zinc binding motif HE255LGH renders MT5-MMP inactive against progelatinase A. In contrast to other MT-MMPs, MT5-MMP tends to shed from cell surface as soluble proteinases, thus offering flexibility as both a cell bound and soluble proteinase for extracellular matrix remodeling processes. Taken together, these properties serve to distinguish MT5-MMP as a versatile MT-MMP playing an important role in extracellular matrix remodeling events in the brain and during embryonic development.
Longitudinal Assessment of Air Conduction Audiograms in a Phase III Clinical Trial of Difluoromethylornithine and Sulindac for Prevention of Sporadic Colorectal Adenomas (2008)

A phase III clinical trial assessed the recurrence of adenomatous polyps after treatment for 36 months with difluoromethylornithine (DFMO) plus sulindac or matched placebos. Temporary hearing loss is a known toxicity of treatment with DFMO, thus a comprehensive approach was developed to analyze serial air conduction audiograms. The generalized estimating equation method estimated the mean difference between treatment arms with regard to change in air conduction pure tone thresholds while accounting for within-subject correlation due to repeated measurements at frequencies. Based on 290 subjects, there was an average difference of 0.50 dB between subjects treated with DFMO plus sulindac compared with those treated with placebo (95% confidence interval, -0.64 to 1.63 dB; P = 0.39), adjusted for baseline values, age, and frequencies. In the normal speech range of 500 to 3,000 Hz, an estimated difference of 0.99 dB (-0.17 to 2.14 dB; P = 0.09) was detected. Dose intensity did not add information to models. There were 14 of 151 (9.3%) in the DFMO plus sulindac group and 4 of 139 (2.9%) in the placebo group who experienced at least 15 dB hearing reduction from baseline in 2 or more consecutive frequencies across the entire range tested (P = 0.02). Follow-up air conduction done at least 6 months after end of treatment showed an adjusted mean difference in hearing thresholds of 1.08 dB (-0.81 to 2.96 dB; P = 0.26) between treatment arms. There was no significant difference in the proportion of subjects in the DFMO plus sulindac group who experienced clinically significant hearing loss compared with the placebo group. The estimated attributable risk of ototoxicity from exposure to the drug is 8.4% (95% confidence interval, -2.0% to 18.8%; P = 0.12). There is a <2 dB difference in mean threshold for patients treated with DFMO plus sulindac compared with those treated with placebo.
POSTHARVEST EFFECTS ON THE QUALITY OF HORTICULTURAL PRODUCTS: USING 1-MCP TO UNDERSTAND THE EFFECTS OF ETHYLENE ON RIPENING AND SENESCENCE PROCESSES (2008)

ISHS XXVII International Horticultural Congress - IHC2006: International Symposium on The Role of Postharvest Technology in the Globalisation of Horticulture POSTHARVEST EFFECTS ON THE QUALITY OF HORTICULTURAL PRODUCTS: USING 1-MCP TO UNDERSTAND THE EFFECTS OF ETHYLENE ON RIPENING AND SENESCENCE PROCESSES
Assessment of Apoptosis by Immunohistochemistry to Active Caspase-3, Active Caspase-7, or Cleaved PARP in Monolayer Cells and Spheroid and Subcutaneous Xenografts of Human Carcinoma (2008)

Immunohistochemistry to active caspase-3, recently recommended for apoptosis detection, is inappropriate to detect apoptosis involving caspase-7. Cleavage of poly-ADP-ribose polymerase 1 (PARP-1), a major substrate of both caspases, is a valuable marker of apoptosis. Apoptosis evaluation induced in vitro either by paclitaxel or by photodynamic treatment (PDT) with Foscan in HT29 or KB monolayer cells and HT29 spheroids yielded a close percentage of labeled cells whatever the antibody used, whereas in control specimens, cleaved PARP (c-PARP) immunostaining failed to detect apoptosis as efficiently as active caspase-3 or -7 immunostaining. Studies in MDA-MB231 monolayer cells and HT29 xenografts either subjected or not subjected to Foscan-PDT resulted in a significant higher number of active caspase-3-labeled cells, although immunofluorescence analysis showed c-PARP and active caspase-3 perfectly colocalized in tumors. A restricted expression of c-PARP was obvious in the greater part of caspase-3 expressing cells from control tumor, whereas photosensitized tumors showed a higher number of cells expressing large fluorescent spots from both active caspase-3 and c-PARP. These results support the assumption that c-PARP expression was dependent on treatment-induced apoptosis. The absence of caspase-7 activation in some caspase-3-expressing cells undergoing Foscan-PDT shows the relevance of using antibodies that can discriminate caspase-dependent apoptotic pathways.
Dendronized Linear Polymers via “Click Chemistry” (2004)

Dendronized linear polymers are prepared from dendritic azides and poly(vinylacetylene) using "click chemistry." The Cu(I)-catalyzed Huisgen [2 + 3] cycloaddition is quantitative up to the third generation.
Formation of Toxic Oligomeric α-Synuclein Species in Living Cells (2008)

This novel application of the BiFC assay to the study of the molecular basis of neurodegenerative disorders enabled the direct visualization of alpha-synuclein oligomeric species in living cells and its modulation by Hsp70, constituting a novel important tool in the search for therapeutics for synucleinopathies.
Molecular cloning and expression of a D1 dopamine receptor linked to adenylyl cyclase activation. (1990)

In order to clone the D1 dopamine receptor linked to adenylyl cyclase activation, the polymerase chain reaction was used with highly degenerate primers to selectively amplify a cDNA sequence from NS20Y neuroblastoma cell mRNA. This amplification produced a cDNA fragment exhibiting considerable sequence homology to guanine nucleotide-binding (G)-protein-coupled receptors that have been cloned previously. To characterize this cDNA further, a full-length clone was isolated from a rat striatal library by using the cDNA fragment as a probe. Sequence analysis of this cDNA clone indicated that it is indeed a member of the G-protein-coupled receptor family and exhibits greatest homology with the previously cloned catecholamine receptors. Northern blot analysis of various neural tissues revealed a transcript of approximately 4 kb that was predominantly located in the striatum with lesser amounts in the cortex and retina. In contrast, no mRNA was detected in the cerebellum, hippocampus, olfactory bulb, mesencephalon, or pituitary. In situ hybridization analysis also revealed a high abundance of mRNA in the striatum as well as in the olfactory tubercle. To establish the identity of this cDNA, we performed transient expression experiments in COS-7 cells. [3H]SCH-23390, a D1-selective radioligand, exhibited specific, saturable binding only in cells that were transfected with this cDNA. Competition binding analysis with a variety of dopaminergic ligands demonstrated a D1 dopaminergic pharmacology. In addition, dopamine as well as other D1-selective agonists stimulated cAMP accumulation in transfected COS-7 cells. We conclude that we have cloned a cDNA encoding the D1 dopamine receptor linked to the activation of adenylyl cyclase activity.
MONET: multiwavelength optical networking (1996)

This paper presents an overview of the multiwavelength optical networking (MONET) program and summarizes its vision. The program objective is to advance, demonstrate, and integrate network architecture and economics, advanced multiwavelength technology, and network management and control to achieve high capacity, reconfigurable, high performance, reliable multiwavelength optical networks, with scalability to national scale, for both commercial and specialized government applications. The paper describes the major research thrusts of the program including network elements, networking demonstration plans, network control and management, and architecture and economics.
Measurement of human mixed muscle protein fractional synthesis rate depends on the choice of amino acid tracer (2007)

The goal of this study was to discover whether using different tracers affects the measured rate of muscle protein synthesis in human muscle. We therefore measured the mixed muscle protein fractional synthesis rate (FSR) in the quadriceps of older adults during basal, postabsorptive conditions and mixed meal feeding (70 mg protein x kg fat-free mass(-1) x h(-1) x 2.5 h) by simultaneous intravenous infusions of [5,5,5-(2)H(3)]leucine and either [ring-(13)C(6)]phenylalanine or [ring-(2)H(5)]phenylalanine and analysis of muscle tissue samples by gas chromatography-mass spectrometry. Both the basal FSR and the FSR during feeding were approximately 20% greater (P < 0.001) when calculated from the leucine labeling in muscle tissue fluid and proteins (fasted: 0.063 +/- 0.005%/h; fed: 0.080 +/- 0.007%/h) than when calculated from the phenylalanine enrichment data (0.051 +/- 0.004 and 0.066 +/- 0.005%/h, respectively). The feeding-induced increase in the FSR ( approximately 20%; P = 0.011) was not different with leucine and phenylalanine tracers (P = 0.69). Furthermore, the difference between the leucine- and phenylalanine-derived FSRs was independent of the phenylalanine isotopomer used (P = 0.92). We conclude that when using stable isotope-labeled tracers and the classic precursor product model to measure the rate of muscle protein synthesis, absolute rates of muscle protein FSR differ significantly depending on the tracer amino acid used; however, the anabolic response to feeding is independent of the tracer used. Thus different precursor amino acid tracers cannot be used interchangeably for the evaluation of muscle protein synthesis, and data from studies using different tracer amino acids can be compared qualitatively but not quantitatively.