gebhart/patrepeval huggingface dataset:
Lubricant Additives (2009)

Cost, environmental, and performance issues coupled with legislative changes, new engine oil requirements, and technology development for exploration of space and the oceans are changing the lubrication additive market. Reflecting how the need for new applications drives the development of new lubricant additives, Lubricant Additives: Chemistry and
Human IgG4: a structural perspective (2015)

IgG4, the least represented human IgG subclass in serum, is an intriguing antibody with unique biological properties, such as the ability to undergo Fab-arm exchange and limit immune complex formation. The lack of effector functions, such as antibody-dependent cell-mediated cytotoxicity and complement-dependent cytotoxicity, is desirable for therapeutic purposes. IgG4 plays a protective role in allergy by acting as a blocking antibody, and inhibiting mast cell degranulation, but a deleterious role in malignant melanoma, by impeding IgG1-mediated anti-tumor immunity. These findings highlight the importance of understanding the interaction between IgG4 and Fcγ receptors. Despite a wealth of structural information for the IgG1 subclass, including complexes with Fcγ receptors, and structures for intact antibodies, high-resolution crystal structures were not reported for IgG4-Fc until recently. Here, we highlight some of the biological properties of human IgG4, and review the recent crystal structures of IgG4-Fc. We discuss the unexpected conformations adopted by functionally important Cγ2 domain loops, and speculate about potential implications for the interaction between IgG4 and FcγRs.
Conventional and High-Speed Intravital Multiphoton Laser Scanning Microscopy of Microvasculature, Lymphatics, and Leukocyte–Endothelial Interactions (2002)

The ability to determine various functions of genes in an intact host will be an important advance in the postgenomic era. Intravital imaging of gene regulation and the physiological effect of the gene products can play a powerful role in this pursuit. Intravital epifluorescence microscopy has provided powerful insight into gene expression, tissue pH, tissue pO2, angiogenesis, blood vessel permeability, leukocyte-endothelial (L-E) interaction, molecular diffusion, convection and binding, and barriers to the delivery of molecular and cellular medicine. Multiphoton laser scanning microscopy (MPLSM) has recently been applied in vivo to overcome three drawbacks associated with traditional epifluorescence microscopy: (i) limited depth of imaging due to scattering of excitation and emission light; (ii) projection of three-dimensional structures onto a two-dimensional plane; and (iii) phototoxicity. Here, we use MPLSM for the first time to obtain high-resolution images of deep tissue lymphatic vessels and show an increased accuracy in quantifying lymphatic size. We also demonstrate the use of MPLSM to perform accurate calculations of the volume density of angiogenic vessels and discuss how this technique may be used to assess the potential of antiangiogenic treatments. Finally, high-speed MPLSM, applied for the first time in vivo, is used to compare L-E interactions in normal tissue and a rhabdomyosarcoma tumor. Our work demonstrates the potential of MPLSM to noninvasively monitor physiology and pathophysiology both at the tissue and cellular level. Future applications will include the use of MPLSM in combination with fluorescent reporters to give novel insight into the regulation and function of genes.
Phosphorylation State-Specific Antibodies (2003)

Over the past four decades, studies directed toward the elucidation of mechanisms involved in the hormonal regulation of metabolism have burgeoned into the field we now know as cellular signal transduction. Both then and now, the role of protein phosphorylation has been central to these investigations, and most physiological processes appear to be subject to phosphorylation-dependent modulation. Detection and quantitation of changes in the state of phosphorylation of specific proteins is of great utility in the quest to establish the function of a given protein and the consequences of its reversible phosphorylation. Two methods commonly used to measure protein phosphorylation and dephosphorylation in cell preparations employ prelabeling with ♪32P or back phosphorylation (see Chapters l-3). These methods continue to be very effective and have advantages for many test systems, but they do have several practical and theoretical limitations (Nestler and Greengard, 1984; Chapters 1–3, this volume). Based in large part on the successful use of short synthetic peptides to produce epitope-targeted antibodies (Lerner, 1982; Sutcliffe et al., 19831, an immunochemical approach became an attractive alternative for detecting changes in the state of phosphorylation of specific proteins at a specific site. The use of phosphorylation state-specific antibodies takes advantage of the sensitivity and selectivity afforded by immunochemical methodology, combined with relatively simple preparation and potentially broad applications.
Gonadotropin and Thyrotropinα- andβ-Subunit Gene Expression in Normal and Neoplastic Tissues Characterized Using Specific Messenger Ribonucleic Acid Hybridization Probes* (1987)

The glycoprotein hormones consist of a common alpha-subunit and distinct, but structurally related, beta-subunits which confer biological specificity. To study glycoprotein hormone gene expression, we prepared specific oligonucleotides complementary to nonhomologous regions of the alpha-subunit and each of the beta-subunit mRNAs encoding human LH, CG, TSH, and FSH. beta-Subunit mRNAs were expressed at relatively low levels in normal pituitary tissue, but were found in greater amounts in pituitary gonadotroph and thyrotroph adenomas. The lengths of the glycoprotein hormone alpha- and beta-subunit mRNAs in normal and neoplastic pituitary tissue were indistinguishable. Expression of different members of the closely related LH beta/CG beta gene family were examined in normal and neoplastic pituitary and placenta using short oligonucleotides complementary to nonhomologous regions of the genes. Although CG beta mRNA was found previously in a pituitary adenoma, none was detected in normal pituitary tissue. In placenta, there was abundant expression of the CG beta gene, but no expression of the LH beta gene, consistent with the acquisition of tissue-specific regulatory sequences in the recently evolved upstream promoter recognition site of the CG beta gene. Primer extension analysis of CG beta mRNA indicated that the same CG beta gene promoter site was used in both normal placenta and JEG-3 choriocarcinoma cells. Of the two CG beta genes that have been reported to be functional, CG beta gene 5 was preferentially expressed in both normal placenta and the neoplastic JEG-3 cell line. CG beta gene 3 expression accounted for only about 5% of the total CG beta mRNA. The previously uncharacterized human TSH beta and FSH beta mRNAs were studied in normal and neoplastic pituitary tissue. At least two species of FSH beta mRNA were found on Northern blots. Oligonucleotide-primed extension of pituitary mRNA demonstrated that FSH beta mRNA heterogeneity resulted from transcription from distinct promoter sites, encoding 5'-untranslated tracts of 48 and 83 bases. These studies demonstrate that specific oligonucleotide probes distinguish expression of the structurally related glycoprotein hormone beta-subunit mRNAs, allowing analyses of tissue-specific gene expression under different physiological conditions as well as in normal and neoplastic tissues.
Contribute to CONNECT (2011)

AZA members are invited to contribute articles, announcements and photo to CONNECT Magazine
Experimental Quantum Error Correction (1998)

Quantum error correction is required to compensate for the fragility of the state of a quantum computer. We report the first experimental implementations of quantum error correction and confirm the expected state stabilization. A precise analysis of the decay behavior is performed in alanine and a full implementation of the error correction procedure is realized in trichloroethylene. In NMR computing, however, a net improvement in the signal to noise would require very high polarization. The experiment implemented the three-bit code for phase errors using liquid state NMR.
Acetylation of some organic compounds under microwave irradiation (2007)

Department of Chemistry, University College of Science, M. L. Sukhadia University, Udaipur-313 001,<br> Rajasthan, India<br> <em>E-mail </em>: ameta_sc@yahoo.com<br> <em>Manuscript received 5 October 2005, revised 27 November 2006, accepted 27 November 2006</em> Acetic acid has been used for acetylation of seven aromatic amines and two phenols under microwave exposure. The time taken for these reactions ranges from 18-25 min with reasonability good yields (65-77%).
PCI-X System Architecture with CD (2000)

From the Book:
PREFACE: About This Book The MindShare Architecture Series
The MindShare Architecture book series includes: ISA System Architecture, EISA System Architecture, 80486 System Architecture, PCI System Architecture, Pentium Processor System Architecture, PCMCIA System Architecture, PowerPC System Architecture, Plug and Play System Architecture, CardBus System Architecture, Protected Mode Software Architecture, Pentium Pro and Pentium II System Architecture, USB System Architecture, FireWire System Architecture, PCI-X System Architecture, and AGP System Architecture. The book series is published by Addison-Wesley. 
Cautionary Note
The reader should keep in mind that MindShare's book series often deals with rapidly evolving technologies. This being the case, it should be recognized that the book is a snapshot of the state of the targeted technology at the time that the book was completed. We attempt to update each book on a timely basis to reflect changes in the targeted technology, but, due to various factors (waiting for the next version of the spec to be frozen, the time necessary to make the changes, and the time to produce the books and get them out to the distribution channels), there will always be a delay. 
This Book Assumes PCI Background Knowledge
As with all MindShare books, this book assumes that the reader has prior knowledge of PCI (because PCI-X is built on top of PCI). Likewise, the PCI-X spec assumes prior knowledge of PCI and describes only how PCI-X differs from PCI as described in the PCI 2.2 spec and the 1.1 PCI-to-PCI Bridge Architecture spec. The reader may gain this background knowledgebyreading the MindShare book entitled PCI System Architecture, Fourth Edition (published by Addison-Wesley). 
Specifications This Book Is Based On
This book is based on the version 1.0 PCI-X specification and the version AF Errata and Clarifications document. Please note the author received the Errata and Clarifications document quite late in the development of the book and every effort was made to integrate this new information. In one or two cases, the amount of time that it would have taken to study and integrate the new information would have delayed the publishing of the book. Rather than delay the book, the author chose to clearly identify the area in question and urges the reader to read the appropriate section of the Errata and Clarifications document. 
Who This Book Is For
This book is intended for use by hardware and software design and support personnel. The tutorial approach to the subject may also make the book useful to technical people who are not involved in design or support. 
Prerequisite Knowledge
The reader should be familiar with PC and PCI System Architectures. MindShare's ISA System Architecture and PCI System Architecture books provide that foundation material. PCI-X is built upon the PCI bus standard. This book assumes that the reader has a working knowledge of the PCI bus protocol. 


0201726823P04062001
Unique synergistic formulation of curcumin, epicatechin gallate and resveratrol, tricurin, suppresses HPV E6, eliminates HPV+ cancer cells, and inhibits tumor progression (2017)

Curcumin (from curry) (C) is highly potent against cervical cancer cells (CCC), but poor bioavailability has limited its clinical use. Similar natural polyphenols resveratrol (from grapes) (R), and epicatechin gallate (from green tea) (E) also display activity against CCC. By treating CCC (HeLa) with C, E, or R, or combinations of these compounds, we computed combination indices and observed a strong synergism among C, E, and R at the unique molar ratio 4:1:12.5. This combination, named as TriCurin, rapidly down regulated HPV18 E6 and NF-kB expression while concomitantly inducing the tumor suppressor protein p53 in HeLa cells. In the mouse c-Ha-ras and HPV16 E6, E7-expressing TC-1 CCC, both C and TriCurin elicited suppression of E6, induction of both p53 and acetyl-p53 (activated p53), and activation of caspase-3, but the TriCurin-evoked changes were several-fold greater than that produced by curcumin (4.7-fold for E6 inhibition, and 2-fold, 6-fold, and 1.7-fold for the induction of p53, acetyl-p53, and active caspase-3, respectively). Consequently, TriCurin was more potent in killing TC-1 and HeLa cells. Intralesional TriCurin treatment of tumors generated in mice by subcutaneously implanting the TC-1 CCC caused an 80-90% decrease in tumor growth. The ability of C to eliminate HeLa cells was significantly stabilized when delivered as TriCurin than when delivered alone. Topical application of TriCurin dispersed in a cream base afforded efficient transfer of C across the skin. Subcutaneous TriCurin injection yielded no adverse effect in tumor-naïve healthy mice. Thus, TriCurin is a safe and promising therapeutic agent against HPV-associated disease.
Protein Synthesis Using S-Alkyl Thioester of Partially Protected Peptide Segments. Synthesis of DNA-Binding Protein of Bacillus stearothermophilus (1992)

Abstract Using partially protected peptide thioesters as building blocks, we synthesized HU-type DNA-binding protein of Bacillus stearothermophilus. Four peptide segments, Boc–[Lys(Boc)3]–HBs(1–15)–SCH2CH2CONH2, iNoc–[Lys(Boc)18,19,23,38]–HBs(16–39)–SCH2CH2CONH2, iNoc–[Lys(Boc)41,59]–HBs(40–60)–SCH2CH2CONH2, [Lys(Boc)75,80,83,86,90]–HBs(61–90) were prepared using peptides obtained by a solid-phase method. A partially protected peptide thioester was condensed to a peptide with a free amino group by converting the thioester to the corresponding active ester in the presence of silver ions and N-hydroxysuccinimide. Finally, highly pure synthetic HBs(1–90) was obtained.
Convection-enhanced delivery of nanoliposomal CPT-11 (irinotecan) and PEGylated liposomal doxorubicin (Doxil) in rodent intracranial brain tumor xenografts (2007)

We have previously shown that convection-enhanced delivery (CED) of highly stable nanoparticle/liposome agents encapsulating chemotherapeutic drugs is effective against intracranial rodent brain tumor xenografts. In this study, we have evaluated the combination of a newly developed nanoparticle/liposome containing the topoisomerase I inhibitor CPT-11 (nanoliposomal CPT-11 [nLs-CPT-11]), and PEGylated liposomal doxorubicin (Doxil) containing the topoisomerase II inhibitor doxorubicin. Both drugs were detectable in the CNS for more than 36 days after a single CED application. Tissue half-life was 16.7 days for nLs-CPT-11 and 10.9 days for Doxil. The combination of the two agents produced synergistic cytotoxicity in vitro. In vivo in U251MG and U87MG intracranial rodent xenograft models, CED of the combination was also more efficacious than either agent used singly. Analysis of the parameters involved in this approach indicated that tissue pharmacokinetics, tumor microanatomy, and biochemical interactions of the drugs all contributed to the therapeutic efficacy observed. These findings have implications for further clinical applications of CED-based treatment of brain tumors.
Serum response factor MADS box serine -162 phosphorylation switches proliferation and myogenic gene programs (2006)

Phosphorylation of a cluster of amino acids in the serum response factor (SRF) "MADS box" alphaI coil DNA binding domain regulated the transcription of genes associated with proliferation or terminal muscle differentiation. Mimicking phosphorylation of serine-162, a target of protein kinase C-alpha, with an aspartic acid substitution (SRF-S162D) completely inhibited SRF-DNA binding and blocked alpha-actin gene transcription even in the presence of potent myogenic cofactors, while preserving c-fos promoter activity because of stabilization of the ternary complex via Elk-1. Introduction of SRF-S162D into SRF null ES cells permitted transcription of the c-fos gene but was unable to rescue expression of myogenic contractile genes. Transition of proliferating C2C12 myoblasts to postfusion myocytes after serum withdrawal was associated with a progressive decline in SRF-S162 phosphorylation and an increase in alpha-actin gene expression. Hence, the phosphorylation status of serine-162 in the alphaI coil may constitute a novel switch that directs target gene expression into proliferation or differentiation programs.
EWSERG fusion transcript produced by chromosomal insertion in a Ewing sarcoma (1997)

The EWS gene is fused in Ewing sarcoma-like tumors by a chromosomal translocation to one of the four ETS-family genes: FLII, ERG, ETVI, and EIAF. The orientation of EWS and FLII on chromosomes 22 and 11, respectively, is 5′ centromeric and 3′ telomeric, whereas that of ERG on chromosome 21 is the reverse. Although 10% of Ewing-family tumors express the EWS-ERG fusion transcript, there have been no reports on tumors with t(21;22)(q22;q12) identified by banding cytogenetics. We found the karyotype 50,XY,+8,+8,+12,+mar in all metaphase cells from a tumor. Reverse transcriptase-polymerase chain reaction (RT-PCR) analysis performed on the tumor and direct sequencing of the products identified the EWS-ERG fusion transcript. Subsequent two-color fluorescence in situ hybridization (FISH) analysis with EWS and ERG clones showed the fused signals on the der(21) chromosome, but no ERG signals on the chromosome 22 homologs. Thus, our RT-PCR and FISH analyses indicated that the chromosome 22 fragment containing the 5′ portion of EWS had been inverted and inserted into chromosome 21 and had fused to the 3′ portion of ERG. This subtle chromosome aberration could not be identified by routine cytogenetics. A chromosomal inversion/insertion has also been described in acute leukemia with the MLL-AF10 fusion gene, and this may be a common pathway for producing fusion of reverse-oriented genes in leukemias and solid tumors. Genes Chromosom. Cancer 18:228–231, 1997. © 1997 Wiley-Liss, Inc.
The association between participant characteristics and serum concentrations of beta-carotene, retinol, retinyl palmitate, and alpha-tocopherol among participants in the Carotene and Retinol Efficacy Trial (CARET) for prevention of lung cancer. (1996)

As part of the multicenter Carotene and Retinol Efficacy Trial (CARET) lung cancer prevention study, we investigated the associations of baseline demographic, health history, and nutritional intake information and the prerandomization serum concentrations of beta-carotene, retinol, retinyl palmitate, and alpha-tocopherol in a random subset of 1182 smokers and asbestos-exposed workers. Dietary intake was estimated via a self-administered food frequency questionnaire using the recently updated United States Department of Agriculture/National Cancer Institute database. In multiple regression analyses, supplemental vitamin use was the strongest predictor of each of the four analytes. There was a statistically significant inverse relationship between smoking and beta-carotene concentrations. Lower serum beta-carotene was associated with current smoking, higher daily cigarettes smoked, and more pack-years. Serum beta-carotene concentrations were higher with increasing years since stopping cigarette use, which suggests a biological mechanism for the lower serum concentration of beta-carotene in smokers. We found weak inverse associations between alcohol intake and the serum concentrations of both beta-carotene and retinol. As in previous reports, dietary intakes as measured by a food frequency questionnaire can only moderately predict serum concentrations of beta-carotene, retinol, retinyl palmitate, and alpha-tocopherol.
Green Fluorescent Protein-mTalin Causes Defects in Actin Organization and Cell Expansion in Arabidopsis and Inhibits Actin Depolymerizing Factor's Actin Depolymerizing Activity in Vitro (2004)

Expression of green fluorescent protein (GFP) linked to an actin binding domain is a commonly used method for live cell imaging of the actin cytoskeleton. One of these chimeric proteins is GFP-mTalin (GFP fused to the actin binding domain of mouse talin). Although it has been demonstrated that GFP-mTalin colocalizes with the actin cytoskeleton, its effect on actin dynamics and cell expansion has not been studied in detail. We created Arabidopsis (Arabidopsis thaliana) plants harboring alcohol inducible GFP-mTalin constructs to assess the effect of GFP-mTalin expression in vivo. We focused on the growing root hair as this is a model cell for studying cell expansion and root hair tip growth that requires a highly dynamic and polar actin cytoskeleton. We show that alcohol inducible expression of GFP-mTalin in root hairs causes severe defects in actin organization, resulting in either the termination of growth, cell death, and/or changes in cell shape. Fluorescence recovery after photobleaching experiments demonstrate that the interaction of GFP-mTalin and actin filaments is highly dynamic. To assess how GFP-mTalin affects actin dynamics we performed cosedimentation assays of GFP-mTalin with actin on its own or in the presence of the actin modulating protein, actin depolymerizing factor. We show that that GFP-mTalin does not affect actin polymerization but that it does inhibit the actin depolymerizing activity of actin depolymerizing factor. These observations demonstrate that GFP-mTalin can affect cell expansion, actin organization, and the interaction of actin binding proteins with actin.
Incoherent Combining of High-Power Laser Beams by Volume Diffractive Gratings in a Photosensitive Silicate Glass (2001)

A model for spectral beam combining by means of transmitting Bragg gratings is developed. 1) Combining efficiency exceeding 92% for two 100-W Yb-fiber lasers by optimization of Bragg gratings and optical setup is achieved. No deterioration of PTR Bragg grating occurred at this level of laser power. 2) It is shown that combining efficiency of about 99% by means of PTR Bragg gratings could be reached with the use 0 high-power lasers with narrow-line and low divergence. 3) High density spectral combining enables creation of multi-kilowatt laser systems for military and industrial applications.
Study of the cytotoxic effect of a peptidic inhibitor of the p53–hdm2 interaction in tumor cells (2002)

Inhibitors of the p53-hdm2 interaction are attractive molecules for stimulating the p53 pathway in tumors. In this report, an inhibitor of the p53-hdm2 interaction, the AP peptide, is used to activate p53 in tumor cells expressing various levels of hdm2 protein. It induces apoptosis only in cells expressing high endogenous levels of hdm2 protein. The absence of apoptosis in tumor cells with low hdm2 levels is due not to alterations in the p53-dependent apoptotic pathway but to a different regulation of this pathway. The peptide is also less toxic for non-tumor cells than for tumor cells overexpressing the hdm2 protein.