gebhart/patrepeval huggingface dataset:
Electronic Monitoring to Assess Adherence With Once-Daily Glaucoma Medications and Risk Factors for Nonadherence (2014)

Electronic monitoring of patient adherence documented that a sizable number of patients with glaucoma do not take their medications as prescribed. Factors were identified that may prove useful in targeting those nonadherent patients for interventions.
Measurements of the congestion responsiveness of windows streaming media (2004)

While previous research has shown that streaming media can respond to network congestion, it is not known to what extent commercial products are responsive. This research characterizes the bitrate response of Windows Streaming Media (WSM) to changes in network capacity and loss rate. A streaming media test bed was built to systematically vary network and content encoding characteristics and measure WSM congestion responsiveness. The results demonstrate that WSM improve response to congestion when content is encoded into several bitrates by the content provider.
Persistent hypertension following inhibition of nitric oxide formation in the young Wistar rat: role of renin and vascular hypertrophy (1993)

Chronic L-NAME treatment in young rats can produce a form of persistent hypertension which is renin-dependent and which does not seem to involve a vascular amplifier mechanism.
Inhibition of Moloney murine leukaemia virus by a retroviral vector, LNL6, carrying ribozymes targeted to the 5' non-coding sequence. (1997)

The packaging region psi is the RNA sequence which directs the inclusion of genomic viral RNA into virions. As such it represents an apparently accessible site for ribozyme action. Ribozymes directed against the psi site of Moloney murine leukaemia virus (MoMLV) were delivered to target cells using a related retroviral vector, LNL6. LNL6 is a vector predominantly derived from MoMLV and, like all retroviruses, requires the psi region to be packaged. By exploiting the heterogeneity between nucleotide sequences of the MoMLV target and LNL6 vector in the psi packaging region, two ribozymes were designed and shown to selectively cleave the target but not the vector sequence. Clonally derived cell lines expressing ribozymes showed inhibition of virus replication. These results show the utility of catalytic RNA as specific antiviral agents.
Near‐Infrared‐Emitting BODIPY‐trisDOTA111In as a Monomolecular Multifunctional Imaging Probe: From Synthesis to In Vivo Investigations (2016)

A new generation of monomolecular imaging probes (MOMIP) based on a distyryl-BODIPY (BODIPY=boron-dipyrromethene) coupled with three DOTA macrocycles has been prepared (DOTA=1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid). The MOMIP presents good fluorescence properties and is very stable in serum. The bimodal probe was conjugated to trastuzumab, and an optical in vivo study showed high accumulation of the imaging agent at the tumor site. (111) In radiometallation of the bioconjugate was performed in high radiochemical yield, highlighting the potential of this new BODIPY-chelators derivative as a bimodal imaging probe.
Glycan Tagging to Produce Bioactive Ligands for a Surface Plasmon Resonance (SPR) Study via Immobilization on Different Surfaces (2009)

Suitable glycan derivatives will find immediate application in the study of their interactions. Here, we present an efficient synthetic strategy to introduce a fluorescent tag functionalized with an amino group into a model disaccharide structure (lactose). This strategy led to the maintenance of bioactivity, checked by the study of the interaction of this bioconjugate with a plant lectin (mistletoe lectin 1) by NMR spectroscopy, computational docking, and surface plasmon resonance (SPR). To demonstrate the versatility of this approach, we immobilized the new glycan derivatives on different surfaces, and a comparative analysis is presented and can be successfully used for biomimetic carbohydrate-protein interaction studies on the SPR biochip.
On measurements of the higher harmonics of transmembrane current (2006)

Measurements of higher harmonics of transmembrane current in bilayer lipid membranes from diphytanoyl phosphatidylcholine (DPhPC) in n-decane and n-tetradecane, caused by alternating voltage applied to the membrane, have been conducted. A universal relation between the amplitudes of harmonics was suggested and experimentally checked. This allowed one to calculate the coefficients of expansion of membrane capacity in series with even powers of membrane voltage and to compare the inhomogeneity of membranes from diphytanoyl phosphatidylcholine in n-decane and n-tetradecane with respect to thickness.
Theory of proton relaxation induced by superparamagnetic particles (1999)

Evaluating and understanding the performances of magnetic colloids as contrast agents for MRI requires a theory describing their magnetic interactions with water protons. The field dependence of the proton longitudinal relaxation rate (nuclear magnetic relaxation dispersion profiles) in aqueous colloidal suspensions of superparamagnetic particles is based on the so-called Curie relaxation, which essentially accounts for the high field part of the NMRD profiles (B0&amp;gt;0.02 T). The low-field part of the NMRD profiles can only be explained by the crystal’s internal anisotropy energy, a concept which clarifies the important difference between superpara- and paramagnetic compounds: the anisotropy energy modifies both the electronic precession frequencies and the thermodynamic probability of occupation of the crystal magnetic states. Our theory clearly explains why a low-field dispersion exists for suspensions of small size crystals, and why it does not for large crystals’ suspensions. This important effect is due to the Boltzmann factors depending on the anisotropy energy, which is itself proportional to the particle volume.
What is the prognosis for the repo market (2015)

Post-crisis regulations continue to target repos. Given their vital role in wholesale markets, other bank businesses will be hit. ICMA's Andy Hill explains why
Gene Therapy of the Immune System (1993)

Many applications of somatic gene therapy relate to the immune system. Several forms of inherited immunodeficiencies are candidates for treatment by gene transfer. Adenosine deaminase (ADA) deficiency causes a form of severe combined immunodeficiency. Stable gene transfer and expression of human ADA has now been obtained in hematopoietic stem cells of mice and, more recently, in large animals. The human ADA has also been introduced and expressed in the primitive human hematopoietic progenitor cells that initiate long-term bone marrow culture. Clinical trials of gene therapy for ADA deficiency have been initiated. The initial protocols were aimed at the correction of peripheral blood T lymphocytes, but recent strategies are attempting ADA gene transfer into peripheral blood or bone marrow stem cells. Other immunodeficiencies that may soon be amenable to somatic gene therapy include leukocyte adhesion deficiency and chronic granulomatous disease. Gene therapy may also be applied to the treatment of acquired disorders. In theory, the hematopoietic stem cells of a human immunodeficiency virus (HIV)-infected patient could be genetically modified and used to reconstitute an HIV-resistant hematopoietic system. Various strategies are currently being investigated to achieve this "intracellular immunization" against HIV. These include the transfer of genes encoding recombinant soluble CD4 molecules, suicide genes under the control of HIV-inducible promoter, and anti-HIV ribozymes. Gene transfer could also be used in the treatment of cancer to increase the immune response of the host, to activate prodrugs specifically in tumors, or to protect normal tissues against the toxicities of conventional treatment. Recent progress in all of these applications of gene therapy is reviewed here.
Fuzzy database language and library-fuzzy extension to SQL (2002)

The authors outline the specification of a fuzzy database language called Fuzzy SQL and the FDL2 C library which is used to implement the Fuzzy SQL processor. The Fuzzy SQL language is an extension obtained from standard SQL using fuzzy theory. The specification includes both the data definition language and the data manipulation language. FDL2 was designed to be built in a fuzzy database management system with a conventional database management system. FDL2 was implemented using the C language on an OMRON LUNA88K workstation.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Hepatitis B virus nucleocapsid/pre-S2 fusion proteins expressed in attenuated Salmonella for oral vaccination. (1990)

Hybrid HBV nucleocapsid-pre-S(2) fusion proteins were stably expressed in several aromatic-dependent attenuated Salmonella typhimurium and Salmonella dublin strains. When these live recombinant bacteria were administered i.p. to BALB/c mice they induced high titer anti-hepatitis B virus core Ag (HBc) and detectable anti-pre-S2 serum antibodies. Upon oral feeding of the recombinant salmonellae to mice, the rate of seroconversion to anti-HBc was dependent on the salmonella strain used. With the best carrier strain high titer anti-HBc antibodies and lower titer anti-pre-S2 serum IgG antibodies were observed two weeks after a single oral immunization. The Ig class and IgG subclass distribution of anti-HBc antibodies after i.p. and oral immunization is consistent with the induction of functional T cell help.
Learning-Based Prediction of Visual Attention for Video Signals (2011)

Visual attention, which is an important characteristic of human visual system, is a useful clue for image processing and compression applications in the real world. This paper proposes a computational scheme that adopts both low-level and high-level features to predict visual attention from video signal by machine learning. The adoption of low-level features (color, orientation, and motion) is based on the study of visual cells, and the adoption of the human face as a high-level feature is based on the study of media communications. We show that such a scheme is more robust than those using purely single low- or high-level features. Unlike conventional techniques, our scheme is able to learn the relationship between features and visual attention to avoid perceptual mismatch between the estimated salience and the actual human fixation. We also show that selecting the representative training samples according to the fixation distribution improves the efficacy of regressive training. Experimental results are shown to demonstrate the advantages of the proposed scheme.
Unsupervised MRI Reconstruction with Generative Adversarial Networks (2020)

Deep learning-based image reconstruction methods have achieved promising results across multiple MRI applications. However, most approaches require large-scale fully-sampled ground truth data for supervised training. Acquiring fully-sampled data is often either difficult or impossible, particularly for dynamic contrast enhancement (DCE), 3D cardiac cine, and 4D flow. We present a deep learning framework for MRI reconstruction without any fully-sampled data using generative adversarial networks. We test the proposed method in two scenarios: retrospectively undersampled fast spin echo knee exams and prospectively undersampled abdominal DCE. The method recovers more anatomical structure compared to conventional methods.
Green fluorescent protein as a reporter of gene expression and protein localization. (1995)

The green fluorescent protein (GFP) from the jellyfish Aequorea victoria is rapidly becoming an important reporter molecule for monitoring gene expression and protein localization in vivo, in situ and in real time. GFP emits bright green light (lambda max = 509 nm) when excited with UV or blue light (lambda max = 395 nm, minor peak at 470 nm). The fluorescence excitation and emission spectra of GFP are similar to those of fluorescein, and the conditions used to visualize this fluorophore are also suitable for GFP. Unlike other bioluminescent reporters, the chromophore in GFP is intrinsic to the primary structure of the protein, and GFP fluorescence does not require a substrate or cofactor. GFP fluorescence is stable, species-independent and can be monitored non-invasively in living cells and, in the case of transparent organisms, whole animals. Here we demonstrate GFP fluorescence in bacterial and mammalian cells and introduce our Living Colors line of GFP reporter vectors, GFP protein and anti-GFP antiserum. The reporter vectors for GFP include a promoterless GFP vector for monitoring the expression of cloned promoters/enhancers in mammalian cells and a series of six vectors for creating fusion protein to either the N or C terminus of GFP.
Gratuitous repression of avtA in Escherichia coli and Salmonella typhimurium (1984)

avtA , which encodes transaminase C (alanine-valine transaminase), is repressed by excess-L-alanine or L-leucine, and also by limitation for any of a number of amino acids in Escherichia coli and Salmonella typhimurium. Amino acid limitation causes repression by promoting the accumulation of L-alanine or L-leucine or both. avtA is also repressed by L-alpha-aminobutyric acid and other nonprotein amino acids which are structurally similar to L-alanine. We hypothesize that L-alanine and L-alpha-aminobutyric acid, whose syntheses are catalyzed by transaminase C, are the true corepressors of avtA . Repression by structural analogs of the true corepressors is termed gratuitous repression.
Retargeted delivery of adenoviral vectors through fibroblast growth factor receptors involves unique cellular pathways (1999)

A major goal of gene therapy is to improve target specificity by delivering vectors through alternative cellular receptors. We previously reported that adenoviral vector delivery through basic fibroblast growth factor (FGF2) receptors enhances both cellular transduction and in vivo efficacy. We now present studies addressing the cellular pathways and mechanisms underlying these events. Cellular receptors for adenoviruses are not required for transduction by FGF2-retargeted vectors. Moreover, alpha(V) integrins can antagonize FGF2 retargeting, in contrast to their obligatory role in non-retargeted vector delivery. By contrast, high-affinity FGF receptors, which are overexpressed on potential tumor targets, are required for FGF2-retargeted transduction. Low-affinity heparan sulfate proteoglycan interactions, however, are not a prerequisite, in marked contrast to their obligatory role in FGF2 mitogenic signaling. By comparing receptor expression and ligand binding with transgene expression, we also demonstrate that FGF2 retargeting enhances transduction by mechanisms other than increasing the number of targeted cells. Rather, the use of alternative targeting ligands supports the conclusion that specific receptor interactions and intracellular events serve to enhance transgene expression. Together, these studies highlight the unique delivery and transduction pathways used by FGF2-retargeted adenoviruses, and help define the basis for their enhanced in vivo efficacy.
Interchain Interaction in Ultradrawing UHMWPE/Tri-O-Alkylcellulose Blend Film Obtained by Gelation/Casting From Solution (2003)

Ultrahigh molecular weight polyethylene (UHMWPE, Mw = 5,000,000) and tri-O-octadecylcellulose (C18, DP = 220) blend films were prepared in decahydronaphthalene solution. The film-formability, drawability, and deformation mechanism of the films with different compositions are investigated. The as-casted blend film of 75⁄25 (PE⁄C18, wt%) did not exhibit indication of phase separation of each component, and the draw ratio reached 130 times as the maximum, indicating that at the composition the two components seemed to be mixed intimately. By the stretching, the molecular chains of both PE and C18 were oriented along the stretching direction in the blend film. Further, the octadecyl groups on the glucopyranose ring were also oriented in the stretching direction. The above results were proved by polarized infrared measurements. The tensile strength of the drawn sample was also investigated to lead this system to an environmentally-friendly material with a high strength.
A balancing act between primate lentiviruses and their receptor (2021)

Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans the biological, physical, and social sciences.
Implementation and Design of WISD(Web Interface System based DICOM) for Efficient Sharing of Medical Information between Clinics (2008)

For efficient compatible system between medical clinics, the medical information has to be built on a standardized protocol such as a HL7 for text data and a DICOM for image data. But it is difficult to exchange information between medical clinics because the systems and softwares are different and also a structure of data and a type of code. Therefore we analyze a structure of DICOM file and design an integrated database for effective information sharing and exchange. The WISD system suggested in this paper separate the DICOM file transmitted by medical clinics to text data and image data and store it in the integrated DB(database) by standardized protocol respectively. It is very efficient that each medical clinic can search and exchange information by web browser using the suggested system. The WISD system can not only search and control of image data and patient information through integrated database and internet, but share medical information without extra charge like construction of new system.
Building an electronic scientific community (2002)

The Community Systems project is building an electronic scientific community, by collecting 'all' the knowledge of a scientific community into a digital library and developing the systems technology to transparently manipulate this library over nationwide networks. The community members are scientists studying the nematode worm C. elegans, a model organism in molecular biology. The community system will encode their knowledge into an information space, with the goal of supporting retrieval and annotation of formal and informal data and information for any biologist with a personal computer and a NREN connection. The paper introduces community systems, the worm community and its knowledge, technology and sociology solutions, and an evolving prototype with plans for its propagation.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Endoplasmic reticulum retention is a common defect associated with tyrosinase-negative albinism (2000)

Tyrosinase is a melanocyte-specific enzyme critical for the synthesis of melanin, a process normally restricted to a post-Golgi compartment termed the melanosome. Loss-of-function mutations in tyrosinase are the cause of oculocutaneous albinism, demonstrating the importance of the enzyme in pigmentation. In the present study, we explored the possibility that trafficking of albino tyrosinase from the endoplasmic reticulum (ER) to the Golgi apparatus and beyond is disrupted. Toward this end, we analyzed the common albino mouse mutation Tyr(C85S), the frequent human albino substitution TYR(T373K), and the temperature-sensitive tyrosinase TYR(R402Q)/Tyr(H402A) found in humans and mice, respectively. Intracellular localization was monitored in albino melanocytes carrying the native mutation, as well as in melanocytes ectopically expressing green fluorescent protein-tagged tyrosinase. Enzymatic characterization of complex glycans and immunofluorescence colocalization with organelle-specific resident proteins established that all four mutations produced defective proteins that were retained in the ER. TYR(R402Q)/Tyr(H402A) Golgi processing and transport to melanosomes were promoted at the permissive temperature of 32 degrees C, but not at the nonpermissive 37 degrees C temperature. Furthermore, evidence of protein misfolding was demonstrated by the prolonged association of tyrosinase mutants with calnexin and calreticulin, known ER chaperones that play a key role in the quality-control processes of the secretory pathway. From these results we concluded that albinism, at least in part, is an ER retention disease.
Identification of androgen-regulated genes in the prostate cancer cell line LNCaP by serial analysis of gene expression and proteomic analysis (2001)

A common therapy for nonorgan-confined prostate cancer involves androgen deprivation. To develop a better understanding of the effect of androgen on prostatic cells, we have analyzed gene expression changes induced by dihydrotestosterone (DHT) in the androgen responsive prostate cancer line LNCaP, at both RNA and protein levels. Changes at the RNA level induced by DHT were determined by means of serial analysis of gene expression (SAGE), and protein profiling was done by means of quantitative two-dimensional polyacrylamide gel electrophoresis. Among 123,371 transcripts analyzed, a total of 28,844 distinct SAGE tags were identified representing 16,570 genes. Some 351 genes were significantly affected by DHT treatment at the RNA level (p < 0.05), of which 147 were induced and 204 repressed by androgen. In two independent experiments, the integrated intensity of 32 protein spots increased and 12 decreased at least two-fold in response to androgen, out of a total of 1031 protein spots analyzed. The change in intensity for most of the affected proteins identified could not be predicted based on the level of their corresponding RNA. Our study provides a global assessment of genes regulated by DHT and suggests a need for profiling at both RNA and protein levels for a comprehensive evaluation of patterns of gene expression.
Targeting of the SF/HGF receptor to the basolateral domain of polarized epithelial cells. (1994)

Scatter Factor, also known as Hepatocyte Growth Factor (SF/HGF), has pleiotropic functions including direct control of cell-cell and cell-substrate adhesion in epithelia. The subcellular localization of the SF/HGF receptor is controversial. In this work, the cell surface distribution of the SF/HGF receptor was studied in vivo in epithelial tissues and in vitro in polarized MDCK monolayers. A panel of monoclonal antibodies against the beta chain of the SF/HGF receptor stained the basolateral but not the apical surface of epithelia lining the lumen of human organs. Radiolabeled or fluorescent-tagged anti-receptor antibodies selectively bound the basolateral cell surface of MDCK cells, which form a polarized monolayer sealed by intercellular junctions, when grown on polycarbonate filters in a two-chamber culture system. The receptor was concentrated around the cell-cell contact zone, showing a distribution pattern overlapping with that of the cell adhesion molecule E-cadherin. The basolateral localization of the SF/HGF receptor was confirmed by immunoprecipitation after domain selective cell surface biotinylation. When cells were fully polarized the SF/HGF receptor became resistant to non-ionic detergents, indicating interaction with insoluble component(s). In pulse-chase labeling and surface biotinylation experiments, the newly synthesized receptor was found exclusively at the basolateral surface. We conclude that the SF/HGF receptor is selectively exposed at the basolateral plasma membrane domain of polarized epithelial cells and is targeted after synthesis to that surface by direct delivery from the trans-Golgi network.