gebhart/patrepeval huggingface dataset:
Cloning and sequencing of the cyclodiene insecticide resistance gene from the yellow fever mosquito Aedes aegypti (1993)

In order to examine the conservation of the mechanism of cyclodiene insecticide resistance between species we cloned a cDNA from the yellow fever mosquito Aedes aegypti homologous to the resistance gene Rdl in Drosophila. In D. melanogaster, resistance to cyclodienes and picrotoxinin is caused by a single amino acid substitution (alanine to serine) in the putative channel lining of a gamma-aminobutyic acid gated chloride ion channel. We report that the mosquito gene not only shows high homology to that of Drosophila but also that resistant strains display substitution of the same amino acid. The significance of this result in relation to the evolution of pesticide resistance, the use of Drosophila as a model insect for resistance studies and the potential use of this gene as a selectable marker in the genetic transformation of non-Drosophilids is discussed.
Purification and characterization of fructan: fructan fructosyltransferase from Jerusalem artichoke (Helianthus tuberosus L.) (1993)

SUMMARY Fructan: fructan fructosyltransferase activity (FFT, EC 2.4.1.100) from Helianthus tuberosus L. was purified 221‐fold by a basic procedure involving ammonium sulphate precipitation, lectin chromatography and ion‐exchange chromatography. The resulting FFT preparation was separated into three protein bands, of apparent molecular weight 72800, 60 500 and 56 200, by denaturing polyacrylamide gel electrophoresis. These proteins showed affinity to sucrose‐Eupergit. FFT proteins with a molecular weight of 72800 were isolated by preparative native gel electrophoresis, and yielded six distinguishable forms on separation by analytical isoelectric focusing. Proteins from the basic purification were separated by preparative isoelectric focusing into several forms with isoelectric points between pH 4.3 and 4.5. Samples from the gel with FFT activity were analyzed by denaturing polyacrylamide gel electrophoresis. Three samples contained only protein with the molecular weight 72800, and one sample contained only protein of apparent molecular weight 60500. The remaining samples contained a mixture of proteins with molecular weights of 72800, 60500 and 56 200. FFT was detected by 1‐kestose‐dependent nystose production. The enzyme was most active at pH 65, and up to 80 % of the activity was retained on pre‐incubation (1 h) at temperatures of up to 40 °C. FFT transferred fructosyl groups from oligofructans [degree of polymerization (DP) 3–8] of the inulin series. No glycosyl transfer occurred with 6‐kestose, neokestose, maltose, raffinose and maltotriose as the sole substrate. Sucrose efficiently accepted fructosyl units from oligofructans with a K m of approximately 0.2 mM. The rate of fructosyl transfer increased with degree of polymerization (from DP 4). 1‐kestose was shown to be an efficient donor of fructosyl units to sucrose.
The Concept of Pathogenicity Islands (2014)

In the early 1980s it was discovered that chromosomal regions may carry blocks of virulence-associated genes and may differ between related members of certain species or genera. These regions were termed pathogenicity islands (PAIs). The basic observation leading to the concept of PAIs was the finding that particular genomic regions of pathogens carry virulence-associated genes together with loci whose presence strongly indicates horizontal gene transfer of these regions between different species or even genera. PAIs occur in the genomes of various pathogens with the capacity to cause infections not only in humans but also in animals and even in plants. The list of PAIs described up to now includes those in bacteria for which frequent gene transfer via plasmids, bacteriophages, and conjugative transposons has been described. The existence of PAIs in eukaryotic pathogens can be predicted, because gene transfer also exists in eukaryotic organisms, transposable elements frequently occur, and retroviruses have a tendency to integrate into tRNA genes. It is now accepted that the generation of PAIs often starts with the integration of plasmids, phages, conjugative transposons, or cointegrates of these into specific target genes, preferentially on the chromosomes.
A Randomized, Double-Blind, Placebo-Controlled Phase 3 Skin Cancer Prevention Study of α-Difluoromethylornithine in Subjects with Previous History of Skin Cancer (2010)

Preclinical studies have shown that the inhibition of ornithine decarboxylase (ODC) by alpha-difluoromethylornithine (DFMO) and resultant decreases in tissue concentrations of polyamines (putrescine and spermidine) prevents neoplastic developments in many tissue types. Clinical studies of oral DFMO at 500 mg/m(2)/day revealed it to be safe and tolerable and resulted in significant inhibition of phorbol ester-induced skin ODC activity. Two hundred and ninety-one participants (mean age, 61 years; 60% male) with a history of prior nonmelanoma skin cancer (NMSC; mean, 4.5 skin cancers) were randomized to oral DFMO (500 mg/m(2)/day) or placebo for 4 to 5 years. There was a trend toward a history of more prior skin cancers in subjects randomized to placebo, but all other characteristics including sunscreen and nonsteroidal anti-inflammatory drug use were evenly distributed. Evaluation of 1,200 person-years of follow-up revealed a new NMSC rate of 0.5 events/person/year. The primary end point, new NMSCs, was not significantly different between subjects taking DFMO and placebo (260 versus 363 cancers, P = 0.069, two-sample t test). Evaluation of basal cell (BCC) and squamous cell cancers separately revealed very little difference in squamous cell cancer between treatment groups but a significant difference in new BCC (DFMO, 163 cancers; placebo, 243 cancers; expressed as event rate of 0.28 BCC/person/year versus 0.40 BCC/person/year, P = 0.03). Compliance with DFMO was >90% and it seemed to be well tolerated with evidence of mild ototoxicity as measured by serial audiometric examination when compared with placebo subjects. The analysis of normal skin biopsies revealed a significant (P < 0.05) decrease in 12-0-tetradecanoylphorbol-13-acetate-induced ODC activity (month 24, 36, and 48) and putrescine concentration (month 24 and 36 only) in DFMO subjects. Subjects with a history of skin cancer taking daily DFMO had an insignificant reduction (P = 0.069) in new NMSC that was predominantly due to a marked reduction in new BCC. Based on these data, the potential of DFMO, alone or in combination, to prevent skin cancers should be explored further.
Functional Dissection of Reelin Signaling by Site-Directed Disruption of Disabled-1 Adaptor Binding to Apolipoprotein E Receptor 2: Distinct Roles in Development and Synaptic Plasticity (2006)

The Reelin signaling pathway controls neuronal positioning in human and mouse brain during development as well as modulation of long-term potentiation (LTP) and behavior in the adult. Reelin signals by binding to two transmembrane receptors, apolipoprotein E receptor 2 (Apoer2) and very-low-density lipoprotein receptor. After Reelin binds to the receptors, Disabled-1 (Dab1), an intracellular adaptor protein that binds to the cytoplasmic tails of the receptors, becomes phosphorylated on tyrosine residues, initiating a signaling cascade that includes activation of Src-family kinases and Akt. Here, we have created a line of mutant mice (Apoer2 EIG) in which the Apoer2 NFDNPVY motif has been altered to EIGNPVY to disrupt the Apoer2-Dab1 interaction to further study Reelin signaling in development and adult brain. Using primary neuronal cultures stimulated with recombinant Reelin, we find that normal Reelin signaling requires the wild-type NFDNPVY sequence and likely the interaction of Apoer2 with Dab1. Furthermore, examination of hippocampal, cortical, and cerebellar layering reveals that the NFDNPVY sequence of Apoer2 is indispensable for normal neuronal positioning during development of the brain. Adult Apoer2 EIG mice display severe abnormalities in LTP and behavior that are distinct from those observed for mice lacking Apoer2. In Apoer2 EIG slices, LTP degraded to baseline within 30 min, and this was prevented in the presence of Reelin. Together, these findings emphasize the complexity of Reelin signaling in the adult brain, which likely requires multiple adaptor protein interactions with the intracellular domain of Apoer2.
Comparison of Ketamine and Thiopental in Healthy Volunteers (1984)

The purpose of this study was to compare the psychological effects of ketamine and thiopental anesthesia. In a double-blind comparison, 20 normal female volunteers were given 2.5 mg/kg ketamine intravenously and 20 were given 5.0 mg/kg thiopental intravenously. Subjects were assessed with a variety of objective and subjective psychological measures before, immediately after, and 24 hr, 2 weeks, and 4 months after anesthesia. Immediately after anesthesia, there was a significantly greater incidence of abnormalities of mental status in subjects given ketamine than in those who had received thiopental. Changes were generally short-lived and were no longer evident on the following day. No significant differences were found between the two groups with regard to long-term changes in personality. Changes in mental status are attributed to the slower, more uneven return to consciousness of the subjects receiving ketamine.
Biomechanical analysis of silicon microelectrode-induced strain in the brain (2005)

The ability to successfully interface the brain to external electrical systems is important both for fundamental understanding of our nervous system and for the development of neuroprosthetics. Silicon microelectrode arrays offer great promise in realizing this potential. However, when they are implanted into the brain, recording sensitivity is lost due to inflammation and astroglial scarring around the electrode. The inflammation and astroglial scar are thought to result from acute injury during electrode insertion as well as chronic injury caused by micromotion around the implanted electrode. To evaluate the validity of this assumption, the finite element method (FEM) was employed to analyze the strain fields around a single Michigan Si microelectrode due to simulated micromotion. Micromotion was mimicked by applying a force to the electrode, fixing the boundaries of the brain region and applying appropriate symmetry conditions to nodes lying on symmetry planes. Characteristics of the deformation fields around the electrode including maximum electrode displacement, strain fields and relative displacement between the electrode and the adjacent tissue were examined for varying degrees of physical coupling between the brain and the electrode. Our analysis demonstrates that when physical coupling between the electrode and the brain increases, the micromotion-induced strain of tissue around the electrode decreases as does the relative slip between the electrode and the brain. These results support the use of neuro-integrative coatings on electrode arrays as a means to reduce the micromotion-induced injury response.
力量训练“组”与“次数”的研究 (1990)

运动员究竟完成多少“组”和“次数”才最适宜肌肉发展呢?这大概是力量训练中常见的问题之一。我于1986年有关研究中提出了每个练习完成1组约12次的训练方案。尽管我们知道在这个问题上还存在各种不同意见,特别是使用不同类型的力量设备时,产生出了截然不同的指导方针(例如:喜欢采用力量训练机械的教练认为每个练习应做1组,而惯用自由重量器械的训练员则要求每
Fat Accretion and Growth in the Rat (1963)

The normal course of fat accretion in male rats from birth to 3 years is described. The relative amount of fat and relative size of fat pads increased steadily throughout life (except for a brief cessation in fat accretion at weaning), in a manner closely related to body weight and independent of age. Several new rat strains with extremes of growth or fat accretion, fed the same diet, were used to define and illustrate courses of fat accretion: very large and very small non-obese strains and a hereditarily obese rat. Rats of different known strains fed a variety of more refined diets show a course of fat growth different from that obtained with stock diets. Several types of obesity are discussed: insulin obesity, nutritional obesity, and hereditary obesity. Hereditary size and growth of the rat were readily (in a few generations) altered up or down, by consistently using the largest or the smallest 25% of the population for breeders. It is probable that the large increase in size of some laboratory rats over the past 40 years has been accomplished not only by improvement in stock diets and colony conditions, but also by selection for increased hereditary size.
Helper and killer T cells do not express B cell immunoglobulin joining and constant region gene segments. (1980)

We have analyzed four kinds of T cells for rearrangement and expression of immunoglobulin genes. These cells include: (a) whole thymus; (b) WEHI-22, a T-cell lymphoma; (c) HT-1, an major histocompatibility complex-restricted T helper line; and (d) CTLLi6, an H-2 alloreactive killer cell line. None of the B-cell joining and constant gene segments are rearranged in the T cells. The monoclonal cells do not express any C kappa, C lambda, Cmu or C alpha RNA species. Small amounts of C kappa, C alpha, and Cmu sequences are present in RNA prepared from the thymus, although the significance of this RNA for T-cell antigen receptor synthesis is uncertain. The data support the hypothesis that expression of B-cell joining and C gene segments is unnecessary for T-cell helper and T-cell killer activity.
Silymarin Inhibits the Development of Diet-Induced Hypercholesterolemia in Rats (1998)

To study the ability of silymarin, a standardized mixture of antioxidant flavonolignans from the medicinal plant Silybum marianum, and of silybin, the main flavonolignan of silymarin, to inhibit the development of diet-induced hypercholesterolemia the rats were fed high cholesterol diet (HCD). Silymarin or silybin were given as dietary supplements, and their influences on serum cholesterol levels were compared to those of probucol, an antioxidant hypocholesterolemic drug. Anticholesterolemic effect of silymarin was parallel to that of probucol, and dose-dependent at dietary drug concentrations of 0.1-0.5-1.0% (w/w). However, in contradistinction to probucol, silymarin caused an increase in high density lipoprotein (HDL)-cholesterol and a decrease in liver cholesterol content, changes considered to be of benefit. In addition to its anticholesterolemic effect silymarin partially prevented the HCD-induced decrease in liver reduced glutathione, an endogenous antioxidant. Silybin was not so effective as silymarin suggesting that either other constituent(s) of silymarin may be responsible for its anticholesterolemic effect or the bioavalability of silybin alone might be lower than that of silybin as a compound of silymarin.
Effect of endotoxicosis on plasma and tissue levels of calcitonin gene-related peptide. (1992)

This study was designed to investigate the changes in tissue content and plasma concentrations of CGRP, a 37 amino acid vasoactive peptide, in male Sprague Dawley rats injected intravenously with a nonlethal dose of 3 mg/kg E. coli endotoxin. Plasma CGRP concentrations in nonendotoxemic animals, measured by a specific RIA, were initially 30.5 +/- 3.3 pg/ml, and were significantly increased to 63.7 +/- 4.6 pg/ml 2 hr after induction of endotoxemia (P less than 0.001; n = 13). A higher dose of LPS did not further elevate plasma CGRP levels, indicating that the maximal response occurred following a dose of 3 mg/kg LPS. CGRP levels in abdominal aorta, inferior vena cava, stomach, kidney, and left ventricular myocardium (4.11, 8.5, 2.61, 0.69, and 0.25 pmol/g wet weight tissue, respectively) were not changed significantly following the injection of endotoxin. However, in lung and mesenteric artery the levels increased significantly from 1.47 +/- 0.12 and 7.97 +/- 1.32 pmol/g wet weight tissue to 1.96 +/- 0.19 (P less than 0.05, n = 11) and 15.02 +/- 2.3 pmol/g (P less than 0.01; n = 7), respectively. In contrast, CGRP levels in the duodenum were significantly decreased from 11.3 +/- 0.93 pmol/g wet weight tissue to 6.2 +/- 0.68 pmol/g (P less than 0.001; n = 6). The changes in plasma concentration and tissue content of CGRP suggest that splanchnic organs may be the source of the elevated plasma CGRP levels in endotoxemia and that selective organ CGRP levels reflect a role in the pathogenesis of the response to endotoxemia.
Computational BAC clone contig assembly for comprehensive genome analysis (2004)

Comparative genomic hybridization (CGH) has proved to be a powerful tool for the detection of genome copy number changes in human cancers and in other diseases caused by segmental aneusomies. Array versions of CGH allow the definition of these aberrations, with resolution determined by the size and distribution of the array elements. Resolution approaching 100 kb can be achieved by use of arrays comprising bacterial artificial chromosomes (BACs) distributed contiguously across regions of interest. We describe here a computer program that automatically assembles contigs of minimally overlapping BAC clones, using information about BAC end-sequences and the normal genome DNA sequence. We demonstrate the characteristics of contigs assembled and annotated by use of this approach for regions of recurrent abnormality in human ovarian and breast cancers at chromosome bands 3q25-q27 and 8q24 and chromosome arm 20q. We also show illustrative analyses of regions of amplification in these regions in breast and ovarian tumor cell lines by use of array CGH with arrays comprising contiguous BACs.
Efficient laser-ultrasound generation by using heavily absorbing films as targets (2001)

An efficient all-fiber optic source is presented; it adopts absorbing films, deposed directly over the fiber tip, as targets. It is demonstrated that the use of absorbing films made of pure graphite, or graphite powder mixed with epoxy resin, has produced a conversion efficiency increase of two orders of magnitude with respect to metallic materials. It is observed that the conversion efficiency increases monotonically as thickness is reduced down to the material optical penetration depth. Moreover, the conversion efficiency rises with the concentration of graphite powder. Principal advantages of this kind of source are the ease of production and miniaturization, the excellent electromagnetic compatibility, wide ultrasonic bandwidth and, consequently, high spatial resolution. The ultrasonic bandwidth can be controlled by varying the laser pulse duration. The possibility of generating ultrasonic signals with high frequency and flat spectral distribution makes the proposed device suitable for biological tissue spectral characterization.
HER-2/neu oncogene expression and proliferation in breast cancers. (1990)

Amplification of the HER-2/neu proto-oncogene in breast cancer has been reported to correlate with poor patient prognosis. The proliferation, or growth fraction, of cells has also been shown to be of prognostic importance in breast cancer. A study was conducted to evaluate the correlation between HER-2/neu gene expression and proliferation in breast cancer. Quantitative immunohistochemical methods for the detection of the HER-2/neu protein expression and for assessing the proliferation fraction on frozen sections of tumor cells were used. The detection of epidermal growth factor receptor (EGFR) along with quantitative DNA ploidy analysis, also was performed on the same breast cancers. The results indicated two subgroups of invasive ductal carcinoma; 1) HER-2/neu overexpressing cases that were negative for EGFR expression and had low proliferation fraction, and a tetraploid DNA pattern (22 cases), and 2) other combinations of HER-2/neu expression and EGFR expression, with a high proliferation fraction and an aneuploid DNA pattern (38 cases). Eight cases of carcinoma in situ were positive for HER-2/neu overexpression and negative for EGFR expression, and had a high proliferation fraction and a tetraploid DNA pattern. Twenty-six cases of low-grade carcinoma exhibited low proliferation and a diploid DNA pattern.
Erasure correction for nested receivers (2011)

We consider packet erasure or error correction coding for a nested receiver structure, where each receiver receives a subset of the packets received by the next receiver. This type of structure arises, for instance, with temporal demands, where each receiver corresponds to a deadline by which certain information must be decoded. By making a connection with our previous work on non-multicast network error correction, we find the capacity region for any given number of erasures or errors whose locations are a priori unknown, along with a capacity-achieving intra-session coding scheme.
Optoelectronics crossbar for avionics: STAR (2000)

The System for Transparent Avionics Routing (STAR) is a high-speed multiple channel optical system currently under construction that interconnects electronic switches using multimode fibre ribbons. The requirements for the switch included (1) a very small footprint, (2) a form factor suitable for mounting as a board, (3) a cascadable circuit switch, (4) slow switching speed of microseconds of many high-speed channels and (5) electrical switching of optical signals (optical input and outputs). The philosophy behind the architecture of STAR is to not have any off-board high-speed signals. To implement STAR, a multichip module is formed consisting of the following chips: detector array, receiver array, high-speed electronic crossbar switch, and VCSEL array. These are bonded to an optoelectronic chip carrier that has on it optical waveguides which route light from an input fibre ribbon to the detectors and from the VCSELs to an output fibre ribbon. The waveguides have turning mirrors written on their ends to reflect the light out of the plane into the detectors or to reflect light from the VCSELs into guides. The guides mediate between the linear channel spacing of the fibres and the 2D array geometry of the VCSELs and receivers.
Evolutionary relationships within a subgroup of HERV-K-related human endogenous retroviruses. (1998)

The prototype endogenous retrovirus HERV-K10 was identified in the human genome by its homology to the exogenous mouse mammary tumour virus. By analysis of a short 244 bp segment of the reverse transcriptase (RT) gene of other HERV-K10-like sequences, it has become clear that these elements represent an extended family consisting of multiple groups (the HML-1 to HML-6 subgroups). Some of these elements are transcriptionally active and contain an intact open reading frame for the RT protein, raising the possibility that this family is still expanding through retrotransposition. To better define the relationship of these endogenous retroviruses, we identified ten new members of the HML-2 subgroup. PCR was used to amplify reverse-transcribed RNA of a 595 bp region of the RT gene in a variety of human cell samples, including normal and leukaemic bone marrow and peripheral blood, placenta cells and a transformed T cell line. We provide an extensive phylogenetic analysis of the relationships for this cluster of HERV-K-related endogenous retroviral elements. Nucleotide diversity values for nonsynonymous versus synonymous codon positions indicate that moderately strong selection is or was operating on these retroviral RT gene segments. The evolution of this class of endogenous retroelements is discussed.