gebhart/patrepeval huggingface dataset:
Interleukin-6 inhibits radiation induced apoptosis in pancreatic cancer cells. (2001)

We have examined the relationship between the expression and activation of the IL-6 receptor and the possible involvement of IL-6 in the resistance of radiation-induced apoptosis in pancreatic cancer cells. Levels of IL-6 in the incubation media measured with ELISA were 1900 pg/ml in CFPAC-1, 54 pg/ml in HPAC and less than 0.2 pg/ml in MIAPaCa-2 and AsPC-1. Western blot demonstrated gp80 protein (IL-6 receptor a subunit) in all pancreatic cancer cell lines except in AsPC-1. When immunoprecipitation was performed, the bands indicating phosphorylated gp130 (IL-6Rbeta) were observed in CFPAC-1 and HPAC, however, no band was found in MIAPaCa-2 or in AsPC-1 cells. RT-PCR and Western blot demonstrated that mRNA and protein expression for Bcl-2 and Bcl-XL was substantially increased by the IL-6 treatment in CEPAC-1 cells, but not in AsPC-1 cells. Neither exogenous IL-6 nor neutralizing anti-IL-6 mAb affected the proliferation of CFPAC-1 and AsPC-1 cells. However, the IL-6 treatment significantly attenuated the susceptibility to radiation in CFPAC-1 cells but not in AsPC-1 cells, and the neutralizing anti-IL-6 mAb significantly increased the radiosensitivity of CFPAC-1 cells. The results indicated that IL-6 might be produced in a paracrine and/or autocrine fashion in pancreatic cancer cells. In-6 inhibits radiation-induced apoptosis and enhances the survival of the cells through a functional receptor system, which is associated with the up-regulation of anti-apoptotic Bcl-2 family proteins, especially Bcl-XL.
Taxonomy, slime molds, and the questions we ask (2002)

Taxonomic treatments often influence the way we both ask and attempt to answer certain biological questions. The classical taxonomy of the dictyostelid cellular slime molds (Dictyosteliales) involves a convenient set of categories that were developed independent of phylogeny. In order to test whether the characters supporting the classical taxonomy hold any phylogenetic signal, we subjected 19 described taxa belonging to two families (Acytosteliaceae and Dictyosteliaceae) and three genera (Acytostelium, Dictyostelium, and Polysphondylium) to rooted cladistic analyses using PAUP* v 4.0b4a. Neither family nor any of the three genera were found to represent monophyletic groups. These results confirm that the classical taxonomy used to delineate families and genera within these slime molds carries very little phylogenetic signal. Taxonomic character sets should be scrutinized phylogenetically in order to determine what information they provide about the relatedness of taxa within a group. Because taxonomy often drives the nature of biological inquiry, caution should be exercised when drawing conclusions regarding the evolution of developmental systems in Dictyostelium.
Stage-Specific Requirement of Cysteine during in Vitro Maturation of Porcine Oocytes for Glutathione Synthesis Associated with Male Pronuclear Formation1 (1997)

The present study was designed to clarify the duration of maturation of porcine oocytes when cysteine promotes male pronuclear (MPN) formation through oocyte glutathione (GSH) synthesis. When cumulus-oocyte complexes (COCs) were cultured in a serum-free maturation medium supplemented or not supplemented with 0.57 mM cysteine, about 90% of oocytes reached metaphase I (M-I) to metaphase II (M-II) and M-II at 36 and 48 h of culture, respectively. When cysteine was added to medium at 0, 12, 24, and 36 h of culture and COCs were cultured for a total of 48 h, oocyte GSH concentrations at the end of culture and the incidence of MPN formation after sperm penetration in vitro were both higher than the values in oocytes cultured for 48 h without cysteine. In contrast, the GSH concentration at 48 h and the incidence of MPN formation were not increased when cysteine was present only during the first 24 h of maturation culture. When cysteine was added to medium every 3 h from 36 h of culture on, a higher incidence of MPN formation was obtained in oocytes cultured in the presence of cysteine from 36 to 42 h than from 36 to 45 h of culture, although GSH concentrations were higher in oocytes cultured with cysteine from 36 to 42 h than from 39 to 42 h of culture. These results suggest that the presence of cysteine in maturation medium is critical only between 42 and 48 h of culture when porcine oocytes are in the late M-I to M-II stage of development. At that time cysteine is utilized for GSH synthesis, which is subsequently instrumental in the formation of MPN after sperm penetration in vitro.
A novel hepatitis B virus (HBV) genetic element with Rev response element-like properties that is essential for expression of HBV gene products. (1993)

Many viruses possess complex mechanisms involving multiple gene products and cis-regulatory elements in order to achieve a fine control of their gene expression at both transcriptional and posttranscriptional levels. Hepatitis B virus (HBV) and retroviruses share many structural and functional similarities. In this study, by genetic and biochemical analyses, we have demonstrated the existence of a novel genetic element within the HBV genome which is essential for high-level expression of viral gene products. This element is located 3' to the envelope coding region. We have shown that this genetic element is cis acting at the posttranscriptional level and that its function is exerted at the level of RNA processing as part of transcribed sequences. This RNA element is also functional in the context of a heterologous gene. Similar to the function of Rev-Rev response element interaction of human immunodeficiency virus type 1, this element appears to inhibit the splicing process and facilitate the transport and utilization of HBV transcripts.
Superoxide generation in plant peroxisomal membranes: Characterization of redox proteins involved (1996)

Conference Article| May 01 1996 Superoxide generation in plant peroxisomal membranes: Characterization of redox proteins involved EDUARDO LOPEZ-HUERTAS; EDUARDO LOPEZ-HUERTAS 1Departemento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín, CSIC, Apdo. 419, E-18080 Granada, Spain Search for other works by this author on: This Site PubMed Google Scholar LUISA M. SANDALIO; LUISA M. SANDALIO 1Departemento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín, CSIC, Apdo. 419, E-18080 Granada, Spain Search for other works by this author on: This Site PubMed Google Scholar LUIS A. DEL RIO LUIS A. DEL RIO 1Departemento de Bioquímica, Biología Celular y Molecular de Plantas, Estación Experimental del Zaidín, CSIC, Apdo. 419, E-18080 Granada, Spain Search for other works by this author on: This Site PubMed Google Scholar Biochem Soc Trans (1996) 24 (2): 195S. https://doi.org/10.1042/bst024195s Views Icon Views Article contents Figures & tables Video Audio Supplementary Data Peer Review Share Icon Share Twitter LinkedIn Cite Icon Cite Get Permissions Citation EDUARDO LOPEZ-HUERTAS, LUISA M. SANDALIO, LUIS A. DEL RIO; Superoxide generation in plant peroxisomal membranes: Characterization of redox proteins involved. Biochem Soc Trans 1 May 1996; 24 (2): 195S. doi: https://doi.org/10.1042/bst024195s Download citation file: Ris (Zotero) Reference Manager EasyBib Bookends Mendeley Papers EndNote RefWorks BibTex toolbar search Search Dropdown Menu nav search search input Search input auto suggest search filter All ContentAll JournalsBiochemical Society Transactions Search Advanced Search This content is only available as a PDF. © 1996 Biochemical Society1996 Article PDF first page preview Close Modal You do not currently have access to this content.
α‐DIFLUOROMETHYL DOPA, A NEW ENZYME‐ACTIVATED IRREVERSIBLE INHIBITOR OF AROMATIC L‐AMINO ACID DECARBOXYLASE (1978)

Abstract DL‐ x ‐Difluoromethyl DOPA (DFMD, RMI 71801), an enzyme‐activated irreversible inhibitor of aromatic L‐amino acid decarboxylase in vitro , produces a rapid, long‐lasting and dose‐dependent inhibition of aromatic L‐amino acid decarboxylase in peripheral tissues of mice when administered i.p. or orally. Doses of 500 mg/kg i.p. produce only very slight inhibition of the enzyme activity in mouse brain whilst inhibiting the enzyme activity of peripheral tissues by more than 90%. With L‐[ 3 H]‐DOPA co‐administration brain concentrations of L‐[ 3 H]DOPA and 3 H‐catecholamines are increased 3‐ to 8‐fold concomitant with a decrease in the peripheral decarboxylation of L‐[ 3 H]DOPA. Under these conditions it is clear that the slight inhibition of enzyme activity in the brain is totally inadequate to inhibit the decarboxylation of L‐DOPA in this organ. Similarly, the decarboxylation of exogenously supplied 5‐hydroxytryptophan is inhibited peripherally with a consequent increase in brain serotonin concentrations. DFMD is another example of an enzyme‐activated irreversible inhibitor which due to its novel and specific mechanism of action, may offer advantages over existing decarboxylase inhibitors.
Zeta potential of microfluidic substrates: 1. Theory, experimental techniques, and effects on separations (2004)

This paper summarizes theory, experimental techniques, and the reported data pertaining to the zeta potential of silica and silicon with attention to use as microfluidic substrate materials, particularly for microchip chemical separations. Dependence on cation concentration, buffer and cation type, pH, cation valency, and temperature are discussed. The Debye-Hückel limit, which is often correctly treated as a good approximation for describing the ion concentration in the double layer, can lead to serious errors if it is extended to predict the dependence of zeta potential on the counterion concentration. For indifferent univalent electrolytes (e.g., sodium and potassium), two simple scalings for the dependence of zeta potential on counterion concentration can be derived in high- and low-zeta limits of the nonlinear Poisson-Boltzman equation solution in the double layer. It is shown that for most situations relevant to microchip separations, the high-zeta limit is most applicable, leading to the conclusion that the zeta potential on silica substrates is approximately proportional to the logarithm of the molar counterion concentration. The zeta vs. pH dependence measurements from several experiments are compared by normalizing the zeta based on concentration.
PEG‐PLA Block Copolymer as Potential Drug Carrier: Preparation and Characterization (2006)

Diblock and multiblock copolymers composed of a poly(D,L-lactide) (PLA) or poly(trimethylene carbonate) (PTMC) core with a hydrophilic chain of poly(ethylene glycol) (PEG) were prepared. These copolymers, in which the core is connected to PEG through a polyfunctional molecule such as citric, mucic, or tartaric acid, may be used to form nanoparticles for drug delivery applications. Branched copolymers were prepared by direct amidation between the polyfunctional acid and methoxy PEGamine, followed by ring-opening polymerization of lactide or trimethyl carbonate to form the PLA and PTMC block copolymers. In addition, a complex multiblock copolymer of biotin-PEG-poly[lactic-co-(glycolic acid)] (PLGA) for application in an avidin-biotin system was prepared for possible design of nanospheres with targeting properties. Studies of drug release from polymeric systems containing multiblock copolymers and studies of polymer degradation were also performed.
The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism (2013)

Short-chain fatty acids (SCFAs), the end products of fermentation of dietary fibers by the anaerobic intestinal microbiota, have been shown to exert multiple beneficial effects on mammalian energy metabolism. The mechanisms underlying these effects are the subject of intensive research and encompass the complex interplay between diet, gut microbiota, and host energy metabolism. This review summarizes the role of SCFAs in host energy metabolism, starting from the production by the gut microbiota to the uptake by the host and ending with the effects on host metabolism. There are interesting leads on the underlying molecular mechanisms, but there are also many apparently contradictory results. A coherent understanding of the multilevel network in which SCFAs exert their effects is hampered by the lack of quantitative data on actual fluxes of SCFAs and metabolic processes regulated by SCFAs. In this review we address questions that, when answered, will bring us a great step forward in elucidating the role of SCFAs in mammalian energy metabolism.
Gluconeogenesis in the kidney and liver slices of a lizard, Uromastix hardwickii (1967)

1. The liver and kidney of the lizard Uromastix hardwickii have much higher contents of carbohydrate than have been reported for the corresponding rat tissues. Most of this carbohydrate still remains in the tissue even after a long preincubation. 2. Kidney slices of this lizard release both glucose and other carbohydrates into the medium. Hence glucose release alone, as demonstrated for rats, cannot be used as a good criterion of gluconeogenesis in this lizard. Moreover, the results obtained by glucose release did not agree with those in which the total carbohydrate was estimated in the slice and medium. 3. l-Glutamate, l-aspartate, dl-valine, l-proline, l-cysteine, l-lactate and succinate stimulated gluconeogenesis in the kidney slices, whereas citrate, l-alanine, l-serine, glycine, l-arginine and l-leucine did not. In liver slices only l-glutamate increased gluconeogenesis. 4. New carbohydrate formation in the kidney and liver slices after incubation with various substrates indicated that gluconeogenesis as well as the amino acid metabolism in this animal may be somewhat different from that of mammals.
Transient response of a wide‐angle cone with dielectric loading (1996)

Introducing a dielectric material near a conical antenna affects the transmitted and received signals. In this paper, wide‐angle cones with dielectric loading are analyzed in both the transmitting and the receiving modes. A Gaussian pulse is used as the exciting signal.
Reduction of the fertilizing capacity of sea urchin sperm by cannabinoids derived from marihuana. II. Ultrastructural changes associated with inhibition of the acrosome reaction (1991)

Pretreatment of Strongylocentrotus purpuratus sperm with delta 9-tetrahydrocannabinol (THC) prevents the triggering of the acrosome reaction by egg jelly. Examination of THC-treated sperm by transmission electron microscopy reveals that the membrane fusion reaction between the sperm plasma membrane and the acrosomal membrane is completely blocked. Electron-dense deposits are present in the subacrosomal fossa and in the centriolar fossa. The nuclear envelope is fragmented in close proximity to the electron-dense deposits. The electron-dense deposits are not bound by a limiting membrane, stain positively for lipid with thymol and farnesol, and disappear from THC-treated sperm that are extracted with chloroform:methanol (2:1) after glutaraldehyde fixation. The electron-dense deposits are lipid in nature and may be a hydrolytic product of the nuclear envelope. Electron-dense deposits are seen in sperm after 1-10 min treatment with 5-100 microM THC. The electron-dense deposits disappear after removal of THC from the sperm by washing, but the fragmented nuclear envelope in the subacrosomal fossa persists. Cannabidiol (CBD) and cannabinol (CBN) also inhibit the triggering of the acrosome reaction by egg jelly and produce ultrastructural changes in the sperm identical to those elicited by THC. Enhanced phospholipase activity stimulated by THC, CBD, and CBN may be the cause of the accumulation of lipid deposits in the sperm. Metabolites derived from this modification of membrane phospholipids may prevent triggering of the acrosome reaction by egg jelly and thereby inhibit fertilization.
Advanced technologies for UHD curved OLED TV (2014)

Abstract Ultra‐high definition (UHD) curved organic light‐emitting diode (OLED) TV requires advanced technologies to realize mass production. White, red, green, and blue (WRGB) OLED TV based on stripe WRGB sub‐pixel structure has distinct advantages in luminance of white, faster response time, wider viewing angle, and potential higher resolution. In this paper, we will introduce technological progress for commercializing large‐sized and UHD curved OLED TV. Those technologies including oxide thin film transistors, white OLEDs, compensation circuit, and solid phase encapsulation enable panel size scalability as well as mass production with lifetime reliability.
Cellular caspase‐8‐like inhibitory protein (cFLIP) prevents inhibition of muscle cell differentiation induced by cancer cells (2006)

Cachexia is a frequent complication of cancer or other chronic diseases. To investigate the pathophysiology of cancer cachexia and pursue treatment options, we developed an in vitro assay of the effects of cancer cell-produced cytokines on primary muscle cells derived from murine skeletal muscle. These studies led to the novel observation that factors secreted by cell lines from prostate cancer and melanoma significantly inhibit differentiation of primary mouse muscle cells. The expression of interleukin (IL) -1beta, TNF-alpha, and proteolysis-inducing factor (PIF) by cancer cells used in this study suggested their role in preventing myogenic differentiation. Both NF-kappaB binding and transcriptional activity were enhanced in muscle cells treated with conditioned media from cancer cells or with proinflammatory cytokines. Stable expression of IKBSR, a known repressor of NF-kappaB activation, and cellular caspase-8-like inhibitory protein (cFLIP) inhibited activation of NF-kappaB in cancer cell media-treated muscle cells with an accompanying enhancement of myogenic protein expression and differentiation. In contrast, overexpression of antiapoptotic protein Bcl-xL did not protect myoblast cells exposed to the same treatment. Instead, we observed enhanced activation of NF-kappaB in Bcl-xL overexpressing cells. These studies show that the in vitro system recapitulates some of the molecular events causing muscle cachexia and provides the basis for new treatment approaches.
Platelet αIIb-β3 integrin engagement induces the tyrosine phosphorylation of Cbl and its association with phosphoinositide 3-kinase and Syk (2000)

Agonist-induced platelet activation triggers ‘inside-out’signalling which activates αIIb-β3, the most abundant integrin in platelet membranes. The engagement of activated αIIb-β3 integrin by linking fibrinogen is necessary for platelet aggregation, and this induces subsequent outside-in signalling, which enhances platelet activation. Here we studied the involvement of Cbl during αIIb-β3-integrin-mediated signal transduction. During thrombin-induced platelet activation, Cbl was tyrosine phosphorylated, and phosphoinositide 3-kinase (PI 3-kinase) activity measured in Cbl immunoprecipitates was increased. Both Cbl phosphorylation and its association with PI 3-kinase were dependent on αIIb-β3 engagement by linking fibrinogen. The P256 and anti-LIBS6 (ligand-induced binding site 6) antibodies, which activate platelets directly through αIIb-β3, induced Cbl phosphorylation and increased the PI 3-kinase activity associated with Cbl. Both thrombin and antibodies to αIIb-β3 induced association of Cbl with the tyrosine kinase, Syk. Experiments performed with inhibitors of tyrosine kinases indicated that both Src-family kinases and Syk contribute to phosphorylation of Cbl and its consequent association with PI 3-kinase. The results show that, following integrin αIIb-β3 engagement, Cbl is tyrosine phosphorylated, recruits PI 3-kinase to this integrin signalling pathway and possibly enhances PI 3-kinase activity, downstream of Src-family tyrosine kinases and Syk activation.
<title>Self-aligning and compressed autosophy video databases</title> (1993)

Autosophy, an emerging new science, explains `self-assembling structures,' such as crystals or living trees, in mathematical terms. This research provides a new mathematical theory of `learning' and a new `information theory' which permits the growing of self-assembling data network in a computer memory similar to the growing of `data crystals' or `data trees' without data processing or programming. Autosophy databases are educated very much like a human child to organize their own internal data storage. Input patterns, such as written questions or images, are converted to points in a mathematical omni dimensional hyperspace. The input patterns are then associated with output patterns, such as written answers or images. Omni dimensional information storage will result in enormous data compression because each pattern fragment is only stored once. Pattern recognition in the text or image files is greatly simplified by the peculiar omni dimensional storage method. Video databases will absorb input images from a TV camera and associate them with textual information. The `black box' operations are totally self-aligning where the input data will determine their own hyperspace storage locations. Self-aligning autosophy databases may lead to a new generation of brain-like devices.
Learning to extract text-based information from the World Wide Web (1997)

There is a wealth of information to be mined from narrative text on the World Wide Web. Unfortunately, standard natural language processing (NLP) extraction techniques expect full, grammatical sentences, and perform poorly on the choppy sentence fragments that are often found on web pages. This paper 1 introduces Webfoot, a preprocessor that parses web pages into logically coherent segments based on page layout cues. Output from Webfoot is then passed on to CRYSTAL, an NLP system that learns text extraction rules from example. Webfoot and CRYSTAL transform the text into a formal representation that is equivalent to relational database entries. This is a necessary first step for knowledge discovery and other automated analysis of free text. Information Extraction from the Web The World Wide Web contains a wealth of text information in the form of free text. Until a text extraction system transforms it into an unambiguous format, much of this information remains inaccessible to autom...
1.3 mu m semiconductor laser power amplifier (1989)

The performance of a 3.4-Gb/s system using a low-power 1.318- mu m distributed-feedback (DFB) laser transmitter and a traveling-wave semiconductor laser power amplifier is studied. The -14.5-dBm, input from a directly modulated DFB laser is boosted to +10.3 dBm, of which +4.8 dBm is coupled into the transmission fiber. The penalty, caused by amplifier noise and pattern effects due to gain saturation, is less than 0.5 dB.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Double quantum wire GaAs/AlGaAs diode lasers grown by organometallic chemical vapor deposition on grooved substrates (1990)

Structure and lasing characteristics of double-quantum-wire lasers are reported. Threshold current as low as 2.4 mA and continuous wave operation at room temperature were achieved for lasers with uncoated facets. Subbands due to lateral quantum confinement were observed in the laser spectra. Good agreement between measured dependence of threshold current on cavity length and a simple model accounting for gain saturation was found.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>