gebhart/patrepeval huggingface dataset:
Biology of Human Umbilical Cord Blood‐Derived Hematopoietic Stem/Progenitor Cells (1998)

Reported in 1989, studies by Broxmeyer, Gluckman, and colleagues demonstrated that umbilical cord blood (UCB) is a rich source of hematopoietic stem/progenitor cells (HSPC) and that UCB could be used in clinical settings for hematopoietic cell transplantation. Since then, a great interest has been generated on the biological characterization of these cells. Over the last nine years, several groups have focused on the study of UCB HSPC, addressing different aspects, such as the frequency of these cells in UCB, the identification of different HSPC subsets based on their immunophenotype, their ability to respond to hematopoietic cytokines, the factors that control their proliferation and expansion potentials, and their capacity to reconstitute hematopoiesis in animal models. Most of these studies have shown that significant functional differences exist between HSPC from UCB and adult bone marrow (i.e., the former possess higher proliferation and expansion potential than the latter). It is also noteworthy that genetic manipulation of UCB HSPC has been achieved by several groups and that genetically modified UCB cells have already been used in the clinic. In spite of the significant advances in the characterization of these cells, we are still in the process of trying to fully understand their biology, both at the cellular and the molecular levels. In the present article, we describe and discuss what is currently known about the biology of UCB HSPC.
Risk of Other Cancers following Kaposi's Sarcoma: Relation to Acquired Immunodeficiency Syndrome (1994)

To evaluate the risk of another cancer among persons who initially developed Kaposi's sarcoma, the authors used data from the Surveillance, Epidemiology, and End Results (SEER) program of the National Cancer Institute for the years 1973-1990. In persons under 70 years of age, 4,946 cases of Kaposi's sarcoma were observed during the period 1980-1990 (6,217 person-years of follow-up). On the basis of rates seen during the period prior to the epidemic of acquired immunodeficiency syndrome (AIDS), 169 cases were expected. Therefore, cases of Kaposi's sarcoma in this group were assumed to be AIDS-related, while cases occurring in older persons or during the 1970s were assumed to be non-AIDS-related. Rates were compared with the numbers of cases expected overall and by site on the basis of age-, sex-, and calendar year-specific rates from the SEER data. Among the 4,946 persons with AIDS-related Kaposi's sarcoma, the risk of developing non-Hodgkin's lymphoma through 1990 was increased 198-fold (95% confidence interval 169-232). However, the risk of all other cancers was only marginally increased (1.5-fold; 95% confidence interval 0.95-2.3), a risk that was probably biased upward because of ascertainment and misclassification. Among 491 persons with non-AIDS-related Kaposi's sarcoma, the relative risk of all cancers, including non-Hodgkin's lymphoma, was 0.9 (upper 95% confidence limit 1.2), and the risk of non-Hodgkin's lymphoma alone was 0.6 (upper 95% confidence limit 3.3). As of 1990, the risk of having another cancer following Kaposi's sarcoma was increased only in persons infected with human immunodeficiency virus, who were at high risk of non-Hodgkin's lymphoma but probably not of other cancers as a whole.
Decomposition of Multicomponent Sea Floor Data into Primary PP, PS, SP and SS Wave Responses (1998)

Abstract The sources in land data acquisition are normally vibrators or buried dynamite. Using vibrators, it is in principe possible to perform a 3 x 3 or "nine-component" seismic survey.
Synthesis and Antifungal Activity of 5,6-Dihydro-3- methyl-1,4-dioxin-2-carboxamides (1998)

Seven N-aryl-5,6-dihydro-3-methyl-1,4-dioxin-2-carboxamides were prepared as potential fungicides. The fungicidal activity of the dioxincarboxamides was evaluated against bean rust, a major disease of cereal crops. Structure−activity relationships for the screened compounds are discussed. The fungicidal activity of the dioxincarboxamides is correlated with that of the structurally similar commercial fungicide, carboxin. Keywords: Dioxincarboxamides; fungicides; bean rust
<title>Color-to-colorant transformation for a seven ink process</title> (1994)

Adding RGB inks to the traditional set of CMYK inks increases the attainable color gamut. But the added complexity poses a challenge in generating suitable separations for rendering of color images. The approach taken in this study reduces the dimensionality of the problem by subdividing the 7 inks into smaller groupings. A series of 4 ink subsets from the 7 ink superset of CMYKRGB were individually characterized and a colorimetric transform from ink to color was obtained for each subset. In color space the 4 ink subsets represent adjacent and overlapping subgamuts of the 7 ink gamut. By utilizing these characterizations both individually and in combination with one another, an inktable which transforms color to ink was generated. In the darker tonal region, 4 inks/color permits access to regions of the full 7 ink gamut which are inaccessible to schemes employing 3 inks/color.
The p21Cip1 protein, a cyclin inhibitor, regulates the levels and the intracellular localization of CDC25A in mice regenerating livers (2002)

Liver cells from p21(Cip1-/-) mice subjected to partial hepatectomy (PH) progress into DNA synthesis faster than those from wild-type mice. These cells also show a premature induction of cyclin E/cyclin-dependent kinase (CDK) 2 activity. We studied the mechanisms whereby cells lacking p21(Cip1) showed a premature induction of this activity. Whereas the levels of CDK2, cyclin E, and p27(Kip1) were similar in both wild-type and p21(Cip1-/-) mice, those of the activator CDC25A were much higher in p21(Cip1-/-) quiescent and regenerating livers than in wild-type animals. Moreover, p21(Cip1-/-) cells also showed a premature translocation of CDC25A from cytoplasm into the nucleus. The ectopic expression of p21(Cip1) into mice embryo fibroblasts from p21(Cip1-/-) mice decreased the levels of CDC25A and delayed its nuclear translocation. The levels of CDC25A messenger RNA in p21(Cip1-/-) cells were higher than in wild-type cells, suggesting that this increase might be responsible, at least in part, for the high levels of CDC25A protein in these cells. Thus, the results reported here indicate that p21(Cip1) regulates the levels and the intracellular localization of CDC25A. We also found a good correlation between CDC25A nuclear translocation and cyclin E/CDK2 activation. In conclusion, premature translocation of CDC25A to the nucleus might be involved in the advanced induction of cyclin E/CDK2 activity and DNA replication in cells from animals lacking p21(Cip1).
A conserved carboxy-terminal subdomain is important for ligand interpretation and transactivation by nuclear receptors (1994)

Nuclear receptors share a highly conserved region located at the very carboxy-terminal part of the ligand-binding domain. Site-directed mutagenesis of conserved hydrophobic residues in this region was reported to create mouse and human glucocorticoid receptors (GRs) and estrogen receptors that cannot transactivate but apparently maintain all the other functions. We constructed analogous mutations in the rat GR to compare the mechanism of deficiency to our recently generated trans-dominant-negative mutant. We found that in the rat GR these carboxy-terminal mutations do not generate trans-dominant-negative receptors. We show that these GR mutants fail to bind dexamethasone properly, and hence receptor transformation and subsequent functions are abolished. Furthermore, we report the identification of a GR mutant that is strongly responsive to the antagonist RU486 but is silent with the agonist dexamethasone. We demonstrate that the reversal of the responsiveness is restricted to GR, since analogous mutations in related receptors do not generate similar phenotypes. Contrary to the case of the progesterone receptor, we show that carboxyl-end truncated GR mutants are not activated by RU486. We conclude that sequence conservation of this subdomain does not necessarily imply functional conservation. Chimeric constructs with GAL4 revealed the importance of protein-protein interactions to exert ligand discrimination, which is mediated by the carboxy-terminal subdomain.
Using LLC Resonant Converter for Designing Wide-Range Voltage Source (2010)

LLC resonant converter with significant resonant inductance is proposed for designing an adjustable wide-range regulated voltage source. Large resonant inductance increases output voltage adjustment range and conversion efficiency, particularly at light loads. Soft switching is achieved for all power devices under all operating conditions by choosing the dead time and maximum switching frequency properly and operating in the converter's inductive region. Using a power-factor-correction (PFC) converter reduces the resonant converter's output voltage dependence to the variations of the main ac input voltage. Thus, the compensation of the load variations and the wide-range adjustment of the regulated output voltage can be achieved by using small switching frequency variations. The proposed method has been used to implement an adjustable wide-range voltage source (35-165 V dc), as an ion implanter arc power supply. An almost flat efficiency curve with maximum value of 94% has been achieved for the converter. Its output current can change from no load to 3 A dc.
Folate analogs altered in the C9-N10 bridge region. 18. Synthesis and antitumor evaluation of 11-oxahomoaminopterin and related compounds (1981)

The chemical synthesis of 11-oxahomoaminopterin (1) has been carried out using procedures which were also found to be applicable to the synthesis of 11-oxahomofolic acid (2). Reaction of 1-bromo-4-[p-(caarbomethoxy)phenoxy]-2-butanone (10) with sodium azide gave 1-azido-4-[p-(carbomethoxy)phenoxy]-2-butanone (11). Protection of the carbonyl group of 11 as the ethylene ketal and subsequent base hydrolysis of the product gave 1-azido-4-(p-carboxyphenoxy)-2-butanone ketal (13). The glutamate conjugate 14 was prepared from 13 by the isobutyl chloroformate method and was hydrogenated to diethyl N-[(alpha-amino-2-oxo-4-butanoyl)-p-anisoyl]-L-glutamate ketal (15). Reaction of 15 with 6-chloro-2,4-diamino-5-nitropyrimidine (16) and 2-amino-6-chloro-4-hydroxy-5-nitropyrimidine (17) and deprotection of the corresponding products gave the intermediates 18 and 19, which were elaborated to 1 and 2 using a series of steps involving deprotection, dithionite reduction, cyclization, oxidation, and hydrolysis. Although 11-oxahomoaminopterin showed antifolate activity against two folate-requiring microorganisms and inhibited Lactobacillus casei DHFR, it was inactive against L-1210 leukemia in mice at a maximum dose of 48 mg/kg. Compound Lactobacillus casei DHFR, it was inactive against L-1210 leukemia in mice at a maximum dose of 48 mg/kg. Compound 1 was also tested for its ability to be transported via the methotrexate transport system using the L-1210 and Ehrlich tumor cell lines, and these results are compared with those of related analogues. The growth inhibitory activity of 1 in the L-1210 cell lines in culture was found to be 15 times weaker than that of methotrexate.
CCD-photometry of comets at large heliocentric distances (1992)

CCD imaging and time series photometry are used to determine the state of activity, nuclear properties and eventually the rotational motion of cometary nuclei. Cometary activity at large heliocentric distances and mantle evolution are not yet fully understood. Results of observations carried out at the 2.1 telescope on Kitt Peak April 10-12 and May 15-16, 1991 are discussed. Color values and color-color diagrams are presented for several comets and asteroids. Estimations of nuclear radii and shapes are given.
Direct Synthesis of Double Hydrophilic Statistical Di- and Triblock Copolymers Comprised of Acrylamide and Acrylic Acid Units via the MADIX Process (2001)

Double hydrophilic statistical, diblock and triblock copolymers comprised of acrylamide and acrylic acid units have been synthesized in aqueous medium using the MADIX process. Starting from an either monofunctional or difunctional xanthate, the resulting AB and ABA-type double hydrophilic block copolymers (DHBC) exhibited molar masses predetermined by the initial monomer/xanthate precursor molar ratio and polydispersity indices in the range 1.2–1.5. Batch copolymerizations yielded well-defined statistical copolymers that were chain-extended for the synthesis of novel poly- (acrylic acid-stat-acrylamide)-block-polyacrylamide DHBC.
Nanoparticles for Imaging, Sensing, and Therapeutic Intervention (2014)

Nanoparticles have the potential to contribute to new modalities in molecular imaging and sensing as well as in therapeutic interventions. In this Nano Focus article, we identify some of the current challenges and knowledge gaps that need to be confronted to accelerate the developments of various applications. Using specific examples, we journey from the characterization of these complex hybrid nanomaterials; continue with surface design and (bio)physicochemical properties, their fate in biological media and cells, and their potential for cancer treatment; and finally reflect on the role of animal models to predict their behavior in humans.
Childhood hepatoblastomas frequently carry a mutated degradation targeting box of the beta-catenin gene. (1999)

Hepatoblastomas (HBs) are embryonal tumors affecting young children and representing the most frequent malignant liver tumors in childhood. The molecular pathogenesis of HB is poorly understood. Although most cases are sporadic, the incidence is highly elevated in patients with familial adenomatous polyposis coli. These patients carry germline mutations of the APC tumor suppressor gene. APC controls the degradation of the oncogene product beta-catenin after its NH2-terminal phosphorylation on serine/threonine residues. APC, as well as beta-catenin, has been found to be a central effector of the growth promoting wingless signaling pathway in development. To find out if this pathway is involved in the pathogenesis of sporadic HBs, we examined 52 biopsies and three cell lines from sporadic HBs for mutations in the APC and beta-catenin genes. Using single-strand conformational polymorphism analysis, deletion screening by PCR, and direct sequencing, we found a high frequency of beta-catenin mutations in sporadic HBs (48%). The mutations affected exon 3 encoding the degradation targeting box of beta-catenin leading to accumulation of intracytoplasmic and nuclear beta-catenin protein. The high frequency of activating mutations in the beta-catenin gene indicates an important role in the pathogenesis of HB.
In vitro antioxidant and antiproliferative activities of three Malaysian sea cucumber species (2009)

The antioxidant and antiproliferative activities of aqueous and organic extracts from three sea cucumber species Holothuria scabra, Holothuria leucospilota and Stichopus chloronotus were studied. The result showed that aqueous extract of H. leucospilota contains the highest level of total phenols (9.7 mg GAE/g), while the lowest level was obtained from organic extract of H. scabra (1.53 mg GAE/g). An aqueous extract of S. chloronotus was the most efficient extract in scavenging of DPPH free radical, giving IC50 = 2.13 mg/ml. The aqueous extracts (50mg/ml) of H. scabra, H. leucospilota and S. chloronotus exhibited high antioxidant activities (77.46%, 64.03% and 80.58%, respectively) against linoleic acid free radical. Only an aqueous extract of S. chloronotus inhibited growth of C33A (human cervical cancer) and A549 (human non-small lung carcinoma) cancer cells, giving IC50 equal to 10.0 µg/ml and 28.0 µg/ml, respectively. On the other hand, the dose dependent antiproliferative effects of all organic extracts studied were observed on C33A and A549 cancer cells. This study, therefore, revealed that all the three species of Malaysian sea cucumber are potential sources of natural antioxidant and anticancer agents.
Identification of human antibody fragment clones specific for tetanus toxoid in a bacteriophage lambda immunoexpression library. (1990)

We have applied a molecular biology approach to the identification of human monoclonal antibodies. Human peripheral blood lymphocyte mRNA was converted to cDNA and a select subset was amplified by the polymerase chain reaction. These products, containing coding sequences for numerous immunoglobulin heavy- and kappa light-chain variable and constant region domains, were inserted into modified bacteriophage lambda expression vectors and introduced into Escherichia coli by infection to yield a combinatorial immunoexpression library. Clones with binding activity to tetanus toxoid were identified by filter hybridization with radiolabeled antigen and appeared at a frequency of 0.2% in the library. These human antigen binding fragments, consisting of a heavy-chain fragment covalently linked to a light chain, displayed high affinity of binding to tetanus toxoid with equilibrium constants in the nanomolar range but did not cross-react with other proteins tested. We estimate that this human immunoexpression library contains 20,000 clones with high affinity and specificity to our chosen antigen.
Surgical wound drainage: a survey of practices among gynaecologists in the British Isles (1988)

All 2836 members and fellows of the Royal College of Obstetricians and Gynaecologists were circulated with a questionnaire concerning their practices with regard to wound drainage. The overall response rate was 43%, although that from practitioners of consultant and senior registrar status was 67%. The use of wound drainage was consistent between surgeons of differing levels of experience and different subspecialty interests within gynaecology. At routine 'clean' operations the use of drains is limited; only 0.4% of gynaecologists drain the peritoneal cavity, 1% the pelvis, 4% the subcutaneous tissues, and 20% the rectus sheath routinely. At more specialist 'clean' procedures, however, greater use of drains is made; at suprapubic incontinence operations 51% of surgeons drain the retropubic space; at radical hysterectomy 55% drain the pelvis; and at radical vulvectomy 63% use drains in the groins, routinely. In all the above operations much greater use is made of active (83%) than passive drains (17%). With potentially contaminated wounds, however, 46% of gynaecologists use a passive drain.
The passage of calcium and strontium across the gut of the anaesthetized goat (1972)

1. The translocation of calcium and strontium across the intestine of the anaesthetized goat has been studied. It has been found to be unaffected by ouabain, by the absence of sodium, by a severely hypertonic environment and by heparin and chondroitin sulphate. Thus it is unlikely that, in the intact goat, the trans-mucosal sodium and calcium transport systems are interrelated.2. The effect of sodium alginate both on the rate of absorption and the calcium/strontium discrimination ratio has been confirmed.3. The movement of calcium ion in both directions across the intestinal mucosa has been studied and evidence for the active transport of calcium adduced.
Proteasome inhibitors induce Fas‐mediated apoptosis by c‐Myc accumulation and subsequent induction of FasL message in human glioma cells (2001)

Proteasome inhibitors were shown previously to induce mitochondria-independent and caspase-3-dependent apoptosis in human glioma cell lines by unknown mechanisms. Here, we showed that treatment with proteasome inhibitors, lactacystin or acetyl-leucinyl-leucinyl-norleucinal, led to elevation of the steady-state c-Myc protein but not c-myc mRNA, suggesting the accumulation of c-Myc protein by proteasome inhibitors. In addition, the marked association of c-Myc protein with ubiquitin by treatment with proteasome inhibitors indicated the involvement of proteasome in c-Myc proteolysis and the stabilization of c-Myc protein by proteasome inhibitors in vivo. The expression of Fas (also termed CD95 or APO-1) mRNA, if analyzed by reverse transcriptase polymerase chain reaction assay, was found to occur constitutively, and increased slightly by the treatment with proteasome inhibitors. In contrast, the expression of Fas ligand (FasL) mRNA was markedly induced temporarily before the activation of caspase-3 by the treatment. Agonistic anti-Fas antibody (CH11) induced apoptotic cell death, suggesting the presence of a functional Fas receptor. In addition, proteasome inhibitor-induced apoptosis was prevented by the addition of antagonistic anti-FasL antibody (4A5) or z-IETD.fmk, a potent inhibitor of caspase-8, indicating the involvement of the Fas receptor-ligand apoptotic signaling system in proteasome inhibitor-mediated apoptosis. Thus, it is suggested that proteasome inhibitors cause the accumulation of c-Myc protein which induces transiently FasL message to stimulate the Fas receptor-ligand apoptotic signaling pathway.
Combined stent implantation and endosaccular coil placement for treatment of experimental wide-necked aneurysms: a feasibility study in swine. (1994)

The combination of stent implantation and coil placement is feasible in the treatment of experimental wide-necked saccular aneurysms. The stent maintains patency of the parent artery while allowing aneurysm occlusion by endosaccular coil placement through the stent's mesh. Occlusion of small aneurysm remnants is possible with no fear of coil hernation or migration into the parent artery. Long-term studies will be necessary before application to treatment of selected intracranial aneurysms.
Rheumatoid Arthritis Synovial Stromal Cells Inhibit Apoptosis and Up-Regulate Bcl-xL Expression by B Cells in a CD49/CD29-CD106-Dependent Mechanism (2000)

Inflammatory sites, such as rheumatoid arthritis (RA) synovial tissue, contain large numbers of activated B cells and plasma cells. However, the mechanisms maintaining B cell viability and promoting their differentiation are not known, but interactions with stromal cells may play a role. To examine this, purified human peripheral B cells were cultured with a stromal cell line (SCL) derived from RA synovial tissue, and the effects on apoptosis and expression of Bcl-2-related proteins were analyzed. As a control, B cells were also cultured with SCL from osteoarthritis synovium or skin fibroblasts. B cells cultured with medium alone underwent spontaneous apoptosis. However, B cells cultured with RA SCL cells exhibited less apoptosis and greater viability. Although SCL from osteoarthritis synovium and skin fibroblasts also rescued B cells from apoptosis, they were less effective than RA SCL. B cell expression of Bcl-xL was markedly increased by RA SCL in a contact-dependent manner, whereas B cell expression of Bcl-2 was unaffected. Protection of B cells from apoptosis and up-regulation of Bcl-xL by RA SCL were both blocked by mAbs to CD106 (VCAM-1), but not CD54 (ICAM-1). Furthermore, cross-linking of CD49d/CD29 (very late Ag-4) on the surface of B cells rescued them from apoptosis and up-regulated Bcl-xL expression. These results indicate that SCL derived from RA synovial tissue play a role in promoting B cell survival by inducing Bcl-xL expression and blocking B cell apoptosis in a CD49d/CD29-CD106-dependent manner.