gebhart/patrepeval huggingface dataset:
Puupehenone, A Cytotoxic Metabolite from a Deep Water Marine Sponge, Stronglyophora hartmani (1987)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTPuupehenone, A Cytotoxic Metabolite from a Deep Water Marine Sponge, Stronglyophora hartmaniShigeo Kohmoto, Oliver J. McConnell, Amy Wright, Frank Koehn, Winnie Thompson, May Lui, and Kenneth M. SnaderCite this: J. Nat. Prod. 1987, 50, 2, 336Publication Date (Print):March 1, 1987Publication History Published online1 July 2004Published inissue 1 March 1987https://pubs.acs.org/doi/10.1021/np50050a064https://doi.org/10.1021/np50050a064research-articleACS PublicationsRequest reuse permissionsArticle Views335Altmetric-Citations49LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Bcl2L12-mediated inhibition of effector caspase-3 and caspase-7 via distinct mechanisms in glioblastoma (2008)

Glioblastoma multiforme (GBM) is a highly aggressive brain cancer that is characterized by the paradoxical features of intense apoptosis resistance yet a marked propensity to undergo necrosis. Bcl2L12 (for Bcl2-Like12) is a nuclear and cytoplasmic oncoprotein that is universally overexpressed in primary GBM and functions to block postmitochondrial apoptosis signaling by neutralizing effector caspase-3 and caspase-7 maturation. This postmitochondrial block in apoptosis engenders the alternate cell fate of cellular necrosis, thus providing a molecular explanation for GBM's classical features. Whereas Bcl2L12-mediated neutralization of caspase-7 maturation involves physical interaction, the mechanism governing Bcl2L12-mediated inhibition of caspase-3 activity is not known. The nuclear localization of Bcl2L12 prompted expression profile studies of primary astrocytes engineered to overexpress Bcl2L12. The Bcl2L12 transcriptome revealed a striking induction of the small heat shock protein alpha-basic-crystallin (alphaB-crystallin/HspB5), a link reinforced by robust alphaB-crystallin expression in Bcl2L12-expressing orthotopic glioma and strong coexpression of alphaB-crystallin and Bcl2L12 proteins in human primary GBMs. On the functional level, enforced alphaB-crystallin or Bcl2L12 expression enhances orthotopic tumor growth. Conversely, RNAi-mediated knockdown of alphaB-crystallin in Bcl2L12-expressing astrocytes and glioma cell lines with high endogenous alphaB-crystallin showed enhanced apoptosis, yet decreased necrotic cell death with associated increased caspase-3 but not caspase-7 activation. Mirroring this specific effect on effector caspase-3 activation, alphaB-crystallin selectively binds pro-caspase-3 and its cleavage intermediates in vitro and in vivo. Thus, alphaB-crystallin is a Bcl2L12-induced oncoprotein that enables Bcl2L12 to block the activation of both effector caspases via distinct mechanisms, thereby contributing to GBM pathogenesis and its hallmark biological properties.
Efficacy and safety of triiodothyronine supplementation in patients with major depressive disorder treated with specific serotonin reuptake inhibitors (2007)

The thyroid hormone, triiodothyronine (T3), is used as a supplement to antidepressant treatment of major depression, to accelerate and enhance response and as an augmenter in patients who have not responded. While there is support from controlled trials and meta-analyses for the use of T3 in conjunction with tricyclic antidepressants, the evidence base for supplementation of specific serotonin reuptake inhibitors (SSRIs) with T3 is more limited. We reviewed the available literature on T3 supplementation of SSRIs including open-label studies and randomized controlled trials (RCTs). Five RCTs were identified. Three were enhancement studies in which T3 was administered concurrently with the antidepressant from the start of treatment and two were augmentation studies in which T3 was added to the antidepressant treatment of patients who had not responded. Three open augmentation studies were identified. The RCTs were too disparate in methodology to allow a meta-analysis to be performed. The enhancement studies are inconclusive in that one showed strongly positive effects of T3, one showed no effect and one showed a trend. The open augmentation studies supported an effect of T3 in SSRI non-responsive patients with some support from a large RCT; a smaller, underpowered RCT did not show efficacy. T3 was well tolerated in most of the studies and adverse effects do not seem to be an impediment to clinical use. Some of the studies identified clinical and thyroid function correlates of response that require further investigation. Further research is needed before it can be definitively established whether T3 is an effective supplement to SSRIs in patients with MDD. The appropriate timing of T3 supplementation needs to be explored and also the dose and length of treatment.
Specific proto-oncogenic tyrosine kinases of src family are enriched in cell-to-cell adherens junctions where the level of tyrosine phosphorylation is elevated. (1991)

To approach the transmembrane signaling pathway in the cell-to-cell adherens junctions (AJ), AJ-specific tyrosine phosphorylation was analyzed. When various types of rat adult tissues were pretreated with sodium orthovanadate, a potent inhibitor of tyrosine phosphatase, immunofluorescence microscopy showed that anti-phosphotyrosine polyclonal antibody specifically stained the undercoat of the cell-to-cell AJ. This indicates that the tyrosine kinase activity is elevated at the undercoat of the cell-to-cell AJ of adult tissues. To identify tyrosine kinases responsible for the high level of tyrosine phosphorylation at AJ, we have performed in vitro phosphorylation experiments with cell-to-cell AJ isolated from rat liver (Tsukita, Sh. and Sa. Tsukita. 1989. J. Cell Biol. 108:31-41) and immunoblotting analyses with specific antibodies for tyrosine kinases. As a result, three proto-oncogenic tyrosine kinases of src family, c-yes, c-src, and lyn kinases, were identified as major tyrosine kinases in the cell-to-cell AJ of hepatocytes. Furthermore, it was immunofluorescently shown that at least two of these kinases, c-yes and c-src kinases, were enriched at the cell-to-cell AJ of various types of cells including hepatocytes. Based on these findings, it is concluded that, in various types of cells, specific proto-oncogenic tyrosine kinases of src-family (c-yes and c-src) are enriched to work as signal mediators in the cell-to-cell AJ where the level of tyrosine phosphorylation is elevated.
From laboratory to clinical practice (2002)

Biochemistry of bone morphogenetic proteins.- Prostate-derived factor and growth and differentiation factor-8:newly discovered members of the TGF-? superfamily.- Bone morphogenetic protein receptors and their nuclear effectorsin bone formation.- Deciphering the binding code of BMP-receptor interaction.- Biology of bone morphogenetic proteins.- Preclinical models of recombinant BMP induced healingof orthopedic defects.- Osteogenic protein-1 (OP-1, BMP-7) for stimulation of healingof closed fractures: evidence based medicine and pre-clinical experience.- Maxillofacial reconstruction.- Bone morphogenetic proteins in periodontal regeneration.- Osteogenic protein-1 (OP-1) in the repair of bone defects and fracturesof long bones: clinical experience.- Evaluation of OP-1 in a rabbit model of lumbar fusions.- Bone morphogenetic proteins and the synovial joints.- BMPs in articular cartilage repair.- The role of bone morphogenetic proteins in kidney development and repair.- Effects of bone morphogenetic proteins on neural tissues.
A Rice Brassinosteroid-Deficient Mutant, ebisu dwarf (d2), Is Caused by a Loss of Function of a New Member of Cytochrome P450 (2003)

We characterized a rice dwarf mutant, ebisu dwarf (d2). It showed the pleiotropic abnormal phenotype similar to that of the rice brassinosteroid (BR)-insensitive mutant, d61. The dwarf phenotype of d2 was rescued by exogenous brassinolide treatment. The accumulation profile of BR intermediates in the d2 mutants confirmed that these plants are deficient in late BR biosynthesis. We cloned the D2 gene by map-based cloning. The D2 gene encoded a novel cytochrome P450 classified in CYP90D that is highly similar to the reported BR synthesis enzymes. Introduction of the wild D2 gene into d2-1 rescued the abnormal phenotype of the mutants. In feeding experiments, 3-dehydro-6-deoxoteasterone, 3-dehydroteasterone, and brassinolide effectively caused the lamina joints of the d2 plants to bend, whereas more upstream compounds did not cause bending. Based on these results, we conclude that D2/CYP90D2 catalyzes the steps from 6-deoxoteasterone to 3-dehydro-6-deoxoteasterone and from teasterone to 3-dehydroteasterone in the late BR biosynthesis pathway.
Creation through Immobilization: A New Family of High Performance Heterogeneous Bifunctional Iminophosphorane (BIMP) Superbase Organocatalysts (2014)

An immobilized chiral bifunctional iminophosphorane superbase organocatalyst has been developed and applied in a range of challenging enantioselective reactions. A unique feature of this novel catalytic system is that the final step creation of the iminophosphorane occurs at the point of immobilization. The utility of the immobilized catalyst system was demonstrated in the nitro-Mannich reaction of ketimines as well as the conjugate addition of high pKa 1,3-dicarbonyl pro-nucleophiles to nitrostyrene. Catalyst recycling was also demonstrated.
The Involvement of NMDA Receptors in Acute and Chronic Effects of Ethanol (1992)

Recent evidence indicates involvement of excitatory amino acid receptors sensitive to N-methyl-d-aspartate (NMDA) in the action of ethanol (EtOH). Pronounced inhibition of NMDA receptor function is seen in vitro with concentrations of EtOH corresponding to those present during alcohol intoxication in humans. The present study was devoted to investigate the role of NMDA receptors in the action of EtOH in rats. Acute experiments showed antagonism by EtOH of convulsions induced by intracerebroventricular injection of NMDA. A similar effect was seen with a high dose of diazepam. Convulsions induced by an agonist of another excitatory amino acid receptor subtype, kainate, were also inhibited by EtOH. An uncompetitive antagonist of NMDA receptors, 5-methyl-10,11-dihydro-5H-dibenzocyclohepten-5,10-imine maleate (MK-801), potentiated EtOH-induced loss of righting, but attenuated the hypothermic action of EtOH. Moreover, MK-801 inhibited audiogenic convulsions in EtOH withdrawn rats. At the same time the effect of a proconvulsive dose of NMDA was not enhanced. Tolerance to the myorelaxant action of both EtOH and MK-801 upon repetitive administration was seen. Also some degree of cross-tolerance was observed. Moreover, MK-801 failed to modify EtOH preference in rats. The present results support involvement of NMDA receptors in expression of some acute and subchronic actions of EtOH and in expression of EtOH withdrawal.
Cloning and nucleotide sequence of the isoamylase gene from Pseudomonas amyloderamosa SB-15. (1988)

The gene (iam) coding for isoamylase (glycogen 6-glucanohydrolase) of Pseudomonas amyloderamosa SB-15 was cloned. Its nucleotide sequence contained an open reading frame of 2313 nucleotides (771 amino acids) encoding a precursor of secreted isoamylase. The precursor contained a signal peptide of 26 amino acid residues at its amino terminus and three regions homologous with those conserved in alpha-amylases (1,4-alpha-D-glucan 4-glucanohydrolase) of species ranging from prokaryotes to eukaryotes. These homologous regions were also found in another debranching enzyme, pullulanase (pullulan 6-glucanohydrolase) from Klebsiella aerogenes. Sequences of the isoamylase also showed significant homology with those between positions 300 and the carboxyl terminus of pullulanase. The regions required for the specificity of isoamylase were discussed on the basis of a comparison of its amino acid sequence with those of alpha-amylases, cyclomaltodextrin glucanotransferases, and pullulanase.
Material Characterization of NiTi Based Memory Alloys Fabricated by the Laser Direct Metal Deposition Process (2005)

Shape memory alloys (SMAs) are used in a wide variety of applications including medical stents, couplings, actuators, jointless monolithic structures for actuation and manipulation, etc. Due to the SMA’s poor machinability it is advantageous to use rapid prototyping (RP) techniques for the manufacturing of SMA structures. However, the influence of the RP process on the properties of the SMA is not fully explored yet. A laser based direct metal deposition (DMD) RP process was used in this work to manufacture NiTi SMA samples and to investigate their physical properties using optical microscopy, differential scanning calorimetry (DSC), chemical analysis with secondary ion mass spectrometry (SIMS), and energy dispersive x-ray spectrometry (EDS) with a scanning electron microscope (SEM). DSC analysis has shown that the thermally treated parts possess smooth and pronounced reversible martensite-austenite transformation peaks that are the prerequisite for the shape memory effect (SME) in SMAs. DSC has also shown that quenching affects the peaks. The density of the produced parts was close to the theoretical density of the material as determined by porosity measurements. Finally, SIMS depth profile analysis has shown very low amounts of contamination in the material manufactured by DMD. The major conclusion is that the DMD RP process can be used to manufacture high-quality SMA structures from SMA powders.
The Molecular Ggenetics of the Long QT Syndrome: Genes Causing Fainting and Sudden Death (1998)

The congenital long QT syndrome is an autosomal-dominant genetic disorder of cardiac electrical repolarization. It is caused by mutations of at least six genes, of which four, all encoding for cardiac ion channels, have been identified: KVLQT1, HERG, and Min K encode for cardiac potassium ion channels, and SCN5A encodes for the cardiac sodium ion channel. In each case the altered ion channel function produces prolongation of the action potential and propensity to torsade de pointes ventricular tachycardia. A fifth gene locus is known to be on chromosome 4, but the gene has not been isolated. At least one other gene must exist, and there may be several more. Long QT syndrome is a frequent but often overlooked cause of unexpected syncope and sudden death in children and young adults. Characteristic findings are prolongation of the QT interval and T wave abnormalities on the electrocardiogram. However, the QT interval at presentation is normal about 10% of the time and just borderline prolonged another 30%, so diagnosis may be difficult. Symptoms are syncope and sudden death, typically occurring during exercise or emotional upset. The manifestations vary, depending on the genotype present. The phenotype also probably varies, depending on the specific mutation involved. Phenotypic heterogeneity is also caused by variable penetrance and expressivity.
On‐Line FTIR Spectroscopic Investigations of Methanol Oxidation in a Direct Methanol Fuel Cell (1997)

A real‐time Fourier transform infrared spectroscopy (FTIRS) analysis of the products of methanol oxidation in a prototype direct‐methanol fuel cell operating at high temperatures (150 to 185°C) is reported here. The methanol oxidation products on platinum black and platinum‐ruthenium catalyst surfaces were determined as a function of the fuel cell operating temperature, current density, and methanol/water mole ratio. Neither formaldehyde nor formic acid was detected in anode exhaust gas at all cell operating conditions. The product distributions of methanol oxidation obtained by on‐line FTIRS are consistent with our previous results obtained by on‐line mass spectroscopy under similar conditions. With pure methanol in anode feed, methanaldimethylacetal was found to be the main product, methyl formate and were also found. However, when water was present in the anode feed, the main product was , and the formation of methanaldimethylacetal and methyl formate decreased significantly with increase of the water/methanol mole ratio. Increase of cell operating temperature enhanced the formation of and decreased the formation of methanaldimethylacetal and methyl formate. Pt/Ru catalyst is more active for methanol oxidation and has a higher selectivity toward formation than Pt‐black. Nearly complete methanol oxidation, i.e., the product was almost exclusively , was achieved using a Pt/Ru catalyst and a water/methanol mole ratio of 2 or higher in the anode feed at a temperature of 185°C or above.
The Relationship between Maternity Blues and Thyroid Dysfunction (1998)

Thyroid dysfunction might be associated with the development of maternity blues.
Wall coating for capillary electrophoresis on microchips (2004)

This review article with 116 references describes recent developments in the preparation of wall coatings for capillary electrophoresis (CE) on a microchip. It deals with both dynamic and permanent coatings and concentrates on the most frequently used microchip materials including glass, poly(methyl methacrylate), poly(dimethyl siloxane), polycarbonate, and poly(ethylene terephthalate glycol). Characterization of the channel surface by measuring electroosmotic mobility and water contact angle of the surface is included as well. The utility of the microchips with coated channels is demonstrated by examples of CE separations on these chips.
Phase I/II Trial Evaluating the Anti-Vascular Endothelial Growth Factor Monoclonal Antibody Bevacizumab in Combination With the HER-1/Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitor Erlotinib for Patients With Recurrent Non–Small-Cell Lung Cancer (2005)

Encouraging antitumor activity and safety of A + T support further development of this combination for patients with advanced NSCLC and other solid tumors.
Increased hydrophobic interactions of iclaprim with Staphylococcus aureus dihydrofolate reductase are responsible for the increase in affinity and antibacterial activity (2009)

Iclaprim binds and inhibits bacterial DHFR in a similar manner to trimethoprim. However, the increased hydrophobic interactions between iclaprim and DHFR account for increased affinity and, unlike trimethoprim, enable iclaprim to inhibit even the resistant enzyme with nanomolar affinity, thus overcoming the mechanism of trimethoprim resistance. The increased antibacterial activity and lower propensity for resistance make iclaprim a clinically promising and useful inhibitor.
Image quality improvement by adaptive exposure correction techniques (2003)

The proposed paper concerns the processing of images in digital format and, more specifically, particular techniques that can be advantageously used in digital still cameras for improving the quality of images acquired with a non-optimal exposure. The proposed approach analyses the CCD/CMOS sensor Bayer data or the corresponding color generated image and, after identifying specific features, it adjusts the exposure level according to a 'camera response' like function.
Determining the likelihood of malignancy in solitary pulmonary nodules with Bayesian analysis. Part I. Theory. (1993)

Only two radiographic findings allow reliable distinction of benign from malignant solitary pulmonary nodules. Intuitively, it is clear that other radiographic and clinical findings should also be important in making this distinction. Subjectively incorporating these other findings into the decision of whether a nodule is benign or malignant is difficult. Likelihood ratios, which indicate the degree of malignancy or benignity represented by a test result or clinical finding, can be combined by means of the Bayes theorem to quantitate the probability of malignancy of a given nodule. From a literature survey, likelihood ratios were derived for six radiographic and four clinical characteristics associated with solitary pulmonary nodules. There were a total of 15 malignant and 19 benign findings, the most important of which were radiographic characteristics. For malignant nodules, the most important radiographic characteristics were thickness of the cavity wall spicular edge, and diameter of over 3 cm. For benign nodules, the most important radiographic characteristics were benign growth rate and a benign pattern of calcification.
Maps (2007)

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1.54 μm photoluminescence of Er3+ doped into SiO2 films containing Si nanocrystals: Evidence for energy transfer from Si nanocrystals to Er3+ (1997)

SiO 2 films containing Si nanocrystals (nc-Si) and Er were prepared and their photoluminescence (PL) properties were studied. The samples exhibited luminescence peaks at 0.81 and 1.54 μm, which could be assigned to the electron-hole recombination in nc-Si and the intra-4f transition in Er3+, respectively. Correlation between the intensities of the two luminescence peaks was studied as functions of Er concentration and excitation power. The present results clearly demonstrate that excitation of Er3+ occurs through the recombination of photogenerated carriers spatially confined in nc-Si and the subsequent energy transfer to Er3+.
Graded spin-on organic bottom antireflective coating for high NA lithography (2008)

Immersion lithography for the 32nm node and beyond requires advanced methods to control 193 nm radiation reflected at the resist/BARC interface, due to the high incident angles that are verified under high numerical aperture (NA) imaging conditions. Swing curve effects are exacerbated in the high NA regime, especially when highly reflective substrates are used, and lead to critical dimension (CD) control problems. BARC reflectivity control is also particularly critical when underlying surface topography is present in buried layers due to potential reflective notching problems. In this work, a graded spin-on organic BARC was developed to enable appropriate reflectivity control under those conditions. The graded BARC consists of two optically distinct polymers that are completely miscible in the casting solution. Upon film coating and post-apply baking, the two polymers vertically phase-separate to form an optically graded layer. Different characterization techniques have been applied to the study of the distribution of graded BARC components to reveal the internal and surface composition of the optically graded film, which includes Variable Angle Spectroscopic Ellipsometry (VASE) and Secondary Ion Mass Spectroscopy (SIMS). Also, optical constant optimization, substrate compatibility, patterning defectivity and etch feasibility for graded BARC layers are described. Superior 193 nm lithographic performance and reflectivity control of graded BARC beyond 1.20 NA compared to conventional BARCs is also demonstrated.