gebhart/patrepeval huggingface dataset:
Cancer diagnosis marker extraction for soft tissue sarcomas based on gene expression profiling data by using projective adaptive resonance theory (PART) filtering method (2006)

The procedure that consisted of two steps, such as the PART-BFCS and the correlation analysis, was proposed. The results suggest that novel diagnostic and therapeutic targets for STS can be extracted by a procedure that includes the PART filtering method.
An interactive graphics-based model of the lower extremity to study orthopaedic surgical procedures (1990)

We have developed a model of the human lower extremity to study how surgical changes in musculoskeletal geometry and musculotendon parameters affect muscle force and its moment about the joints. The lines of action of 43 musculotendon actuators were defined based on their anatomical relationships to three-dimensional bone surface representations. A model for each actuator was formulated to compute its isometric force-length relation. The kinematics of the lower extremity were defined by modeling the hip, knee, ankle, subtalar, and metatarsophalangeal joints. Thus, the force and joint moment that each musculotendon actuator develops can be computed for any body position. The joint moments calculated with the model compare well with experimentally measured isometric joint moments. We developed a graphical interface to the model that allows the user to visualize the musculoskeletal geometry and to manipulate the model parameters to study the biomechanical consequences of orthopaedic surgical procedures. For example, tendon transfer and lengthening procedures can be simulated by adjusting the model parameters according to various surgical techniques. Results of the simulated surgeries can be analyzed quickly in terms of postsurgery muscle forces and other biomechanical variables. Just as interactive graphics have enhanced engineering design and analysis, we have found that graphics-based musculoskeletal models are effective tools for designing and analyzing surgical procedures.
Reducing the critical current for short-pulse spin-transfer switching of nanomagnets (2005)

We have fabricated permalloy∕copper∕permalloy nanopillar spin valves designed to reduce the critical current for spin-transfer switching while maintaining thermal stability of the free layer. Pulsed current amplitudes necessary for switching a 4.5-nm-thick permalloy free layer range from 0.4mA for a 100ns pulse to 2mA for a 1ns pulse, showing that the magnetization must be overdriven to achieve switching on short time scales. Comparisons to Landau–Lifshitz–Gilbert simulations indicate an effective damping parameter ≈0.03 and spin-torque efficiencies for parallel-to-antiparallel and antiparallel-to-parallel switching that are more symmetric than predicted by recent theoretical models.
Silica−Polypeptide Composite Particles: Controlling Shell Growth (2010)

A method is presented for preparing core-shell silica-polypeptide composite particles with variable and controllable shell growth. The procedure is demonstrated using poly(carbobenzoxy-L-lysine) and poly(benzyl-L-glutamate); after deprotection, these can lead to the most common basic and acidic homopolypeptides, poly(L-lysine) and poly(L-glutamic acid). Control over shell thickness is made possible by sequential addition of N-carboxyanhydride peptide monomer to surfaces that have been functionalized with an amino initiator combined with a surface passivation agent. This results in a series of particles having different shell thicknesses. Variation of shell thickness was evident both in light scattering and in thermogravimetric assays. The shells were visible by transmission electron microscopy; these images along with light scattering measurements suggest the polymers in the shells are highly solvated.
Multiple-focus ultrasound phased-array pattern synthesis: optimal driving-signal distributions for hyperthermia (1989)

A method for computing array element amplitude and phase distributions for direct synthesis of multiple-focus field patterns using ultrasonic phased arrays is shown to be capable of producing desired field levels at a set of control points in the treatment volume. The complex pressure at any of these control points can be chosen to produce the desired power deposition at the point, including reducing the field level to avoid potential hot spots, thus providing a powerful tool for hyperthermia treatment planning. The method also allows the complex excitation vector to be weighted to reduce the dynamic range of the driving signals without disturbing the relative field levels at the control points, allowing near maximum power transfer from the array into the treatment volume.
p53 gene mutation in B-cell chronic lymphocytic leukemia is associated with drug resistance and is independent of MDR1/MDR3 gene expression (1993)

We studied 53 patients with B-cell chronic lymphocytic leukemia (B-CLL) and found mutations of the p53 gene in 15%. Patients with p53 gene mutations were found to have an aggressive form of B-CLL disease characterized by advanced Rai stage, rapid lymphocyte doubling time (LDT), and resistance to chemotherapy. While 27 of 29 treated patients (93%) without p53 mutations achieved a partial remission, only one of seven treated patients (14%) with p53 mutations achieved a partial remission (P = .00009). Adjusting for prognostic factors (age, sex, race, and Rai stage), patients with p53 gene mutations had a 13-fold greater risk of death than patients without p53 mutations (P = .013). In addition to examining the clinical relevance of p53 gene mutations in B-CLL, we investigated the possible role of p53 gene regulation in the expression of the multidrug resistance genes MDR1 and MDR3. We quantitated MDR1 and MDR3 mRNA expression by reverse transcription-polymerase chain reaction (RT-PCR). Expression of both the MDR1 and MDR3 genes was independent of p53 gene mutation or prior drug treatment, and did not predict for clinical response. Our findings indicate that p53 gene mutations in B-CLL are associated with a poor clinical outcome and may be a prognostic indicator for drug resistance.
Basic fibroblast growth factor modulates integrin expression in microvascular endothelial cells. (1993)

During angiogenesis capillary endothelial cells undergo a coordinated set of modifications in their interactions with extracellular matrix components. In this study we have investigated the effect of the prototypical angiogenic factor basic fibroblast growth factor (bFGF) on the expression and function of several integrins in microvascular endothelial cells. Immunoprecipitation experiments with antibodies to individual subunits indicated that microvascular cells express at their surface several integrins. These include the alpha 1 beta 1, alpha 2 beta 1, and alpha 3 beta 1 laminin/collagen receptors; the alpha 6 beta 1 laminin receptor; the alpha 5 beta 1 and alpha v beta 1 fibronectin receptors; the alpha 6 beta 4 basement membrane receptor; and the alpha v beta 3 and alpha v beta 5 vitronectin receptors. Treatment with bFGF caused a significant increase in the surface expression of the alpha 2 beta 1, alpha 3 beta 1, alpha 5 beta 1, alpha 6 beta 1, alpha 6 beta 4, and alpha v beta 5 integrins. In contrast, the level of expression of the alpha 1 beta 1 and alpha v beta 3 integrins was decreased in bFGF-treated cells. Immunoprecipitation of metabolically labeled cells indicated that bFGF increases the biosynthesis of the alpha 3, alpha 5, alpha 6, beta 4, and beta 5 subunits and decreases the production of the alpha v and beta 3 subunits. These results suggest that bFGF modulates integrin expression by altering the biosynthesis of individual alpha or beta subunits. In accordance with the upregulation of several integrins observed in bFGF-treated cells, these cells adhered better to fibronectin, laminin, vitronectin, and type I collagen than did untreated cells. The largest differences in beta 1 integrin expression occurred approximately 72 h after exposure to bFGF, at a time when the expression of the endothelial cell-to-cell adhesion molecule endoCAM was also significantly upregulated. In contrast, a shorter exposure to bFGF (24-48 h) was required for the maximal induction of plasminogen activator production in the same cells. Taken together, these results show that bFGF causes significant changes in the level of expression and function of several integrins in microvascular endothelial cells.
Atypical antipsychotics in the treatment of schizophrenia: systematic overview and meta-regression analysis (2000)

There is no clear evidence that atypical antipsychotics are more effective or are better tolerated than conventional antipsychotics. Conventional antipsychotics should usually be used in the initial treatment of an episode of schizophrenia unless the patient has previously not responded to these drugs or has unacceptable extrapyramidal side effects.
Cyclin B1 and D1 expression in invasive cervical cancer (2005)

Objective : Cyclin is a family of regulatory proteins that play a key role in controlling the cell cycle. Abnormalities of cell cycle regulators, including cyclins and cyclin dependent kinases (CDKs), have been reported in malignant tumors. This study was undertaken to quantitatively detect cyclin B1 and D1 in cervical cancer. Methods : A quantitative real-time reverse transcriptase-polymerase chain reaction (RT-PCR) and Western blot analysis were used to analyze the expression of cyclin B1, D1 mRNA and proteins, respectively, in fresh invasive cervical cancer (n=41) and normal cervix tissue (n=10). Results : There was significantly greater cyclin B1 expression in invasive cervical cancer than in normal cervix tissue (p=0.019). However, cyclin D1 expression was not significantly different (p=0.967). A Western blot analysis yielded similar results. Conclusion : Our results were consistent with the concept that up-regulation of cyclin B1 expression occurred in cervical cancer and an aberrant expression of cyclin B1 might play an important role in cervical carcinogenesis.
Mixed-signal parallel compressed sensing and reception for cognitive radio (2008)

A parallel structure to do spectrum sensing in Cognitive Radio (CR) at sub-Nyquist rate is proposed. The structure is based on Compressed Sensing (CS) that exploits the sparsity of frequency utilization. Specifically, the received analog signal is segmented or time-windowed and CS is applied to each segment independently using an analog implementation of the inner product, then all the samples are processed together to reconstruct the signal. Applying the CS framework to the analog signal directly relaxes the requirements in wideband RF receiver front-ends. Moreover, the parallel structure provides a design flexibility and scalability on the sensing rate and system complexity. This paper also provides a joint reconstruction algorithm that optimally detects the information symbols from the sub-Nyquist analog projection coefficients. Simulations showing the efficiency of the proposed approach are also presented.
Estimation of multiple scattering by iterative inversion; Part 1, Theoretical considerations (1997)

Abstract A review has been given of the surface-related multiple problem by making use of the so-called feedback model. From the resulting equations it has been concluded that the proposed solution does not require any properties of the subsurface. However, source-detector and reflectivity properties of the surface need be specified. Those properties have been quantified in a surface operator and this operator is estimated as part of the multiple removal problem. The surface-related multiple removal algorithm has been formulated in terms of a Neumann series and in terms of an iterative equation. The Neumann formulation requires a nonlinear optimization process for the surface operator; while the iterative formulation needs a number of linear optimizations. The iterative formulation also has the advantage that it can be integrated easily with another multiple removal method. An algorithm for the removal of internal multiples has been proposed as well. This algorithm is an extension of the surface-related method. Removal of internal multiples requires knowledge of the macro velocity model between the surface and the upper boundary of the multiple generating layer. In Part II (also published in this issue) the success of the proposed algorithms has been demonstrated on numerical experiments and field data examples.
Inhibitors of Lysine Biosynthesis as Antibacterial Agents (2003)

Bacterial biosynthesis of lysine has come under increased scrutiny as a target for novel antibacterial agents as it provides both lysine for protein synthesis and meso-diaminopimelate for construction of the bacterial peptidoglycan cell wall. Recent studies of the enzymes of the lysine biosynthetic pathway, development of inhibitors and investigations of their antibacterial properties are discussed.
Conjunctival Proinflammatory and Proapoptotic Effects of Latanoprost and Preserved and Unpreserved Timolol: An Ex Vivo and In Vitro Study (2004)

These ex vivo and in vitro studies demonstrate that BAC-containing latanoprost and timolol exhibit higher proinflammatory and proapoptotic effects on conjunctival cells than does unpreserved timolol. Latanoprost caused less toxicity, however, than preserved timolol, and both drugs were less toxic than BAC alone. These results suggest a potential protective effect of the prostaglandin analogue and to a lesser extent of timolol against the toxicity of BAC in conjunctival cells.
Highly purified Th17 cells from BDC2.5NOD mice convert into Th1-like cells in NOD/SCID recipient mice (2009)

Th17 cells are involved in the pathogenesis of many autoimmune diseases, but it is not clear whether they play a pathogenic role in type 1 diabetes. Here we investigated whether mouse Th17 cells with specificity for an islet antigen can induce diabetes upon transfer into NOD/SCID recipient mice. Induction of diabetes in NOD/SCID mice via adoptive transfer of Th1 cells from BDC2.5 transgenic mice was prevented by treatment of the recipient mice with a neutralizing IFN-γ-specific antibody. This result suggested a major role of Th1 cells in the induction of disease in this model of type 1 diabetes. Nevertheless, transfer of highly purified Th17 cells from BDC2.5 transgenic mice caused diabetes in NOD/SCID recipients with similar rates of onset as in transfer of Th1 cells. However, treatment with neutralizing IL-17-specific antibodies did not prevent disease. Instead, the transferred Th17 cells, completely devoid of IFN-γ at the time of transfer, rapidly converted to secrete IFN-γ in the NOD/SCID recipients. Purified Th17 cells also upregulated Tbet and secreted IFN-γ upon exposure to IL-12 in vitro and in vivo in NOD/SCID recipients. These results indicate substantial plasticity of Th17 commitment toward a Th1-like profile.
Achieving throughput and functionality in a common architecture: the Datacycle experiment (2002)

Summary form only given. The Datacycle database architecture is based on repetitive broadcast of database contents over high bandwidth channels and on-the-fly filtering of database contents to extract records of interest. These two mechanisms-high speed broadcast and on-the-fly filtering-result in a system that achieves the goals of high performance transaction processing, a powerful and flexible query capability, and high levels of concurrent access to a single database by multiple applications. The prototype system comprises multiple pump boards, each of which stores up to 128 Mbytes of database contents, and multiple access manager boards, each of which contains three on-board VLSI data filter chips. Each VLSI filter executes queries against the contents of a 53 Mbyte/second broadcast channel; selected records and/or computed aggregate values are returned to the host application.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Fibrillogenesis of synthetic amyloid-β peptides is dependent on their initial secondary structure (1995)

Synthetic peptides containing the sequence of Alzheimer's amyloid-beta peptide (A beta) spontaneously form amyloid-like fibrils in vitro, and have been extensively used to study the factors that modulate fibrillogenesis. Contradictory observations have been reported regarding the neurotoxicity of A beta and the influence of some A beta-binding proteins on in vitro A beta amyloid formation. In this study, we show that A beta 1-40 synthetic peptides obtained from different suppliers, have significantly distinct fibrillogenic properties. No differences were detected in the chemical structure or in the initial assembly state by mass spectroscopy, reverse-phase high performance liquid chromatography and denaturing or non-denaturing gel electrophoresis. However, there was a direct correlation between the ability of soluble peptides to form amyloid and their percentage of beta-sheet structure, as determined by electron microscopy, fluorescence associated to thioflavine T bound to amyloid, and circular dichroism. The data suggest that the determinant factor of A beta fibrillogenesis is the secondary structure adopted by the peptide in its soluble state.
Peptide and Protein Presenting Materials for Tissue Engineering (2004)

Abstract Tissue engineering aims to create new tissues and organs to replace those lost to disease, trauma, or congenital defects. However, considerable instruction must be given to the cells forming these new tissues if one is to create a tissue structurally and functionally similar to the native tissue. Materials are ideal for the local presentation of various peptides and proteins that can bind to cell surface receptors and regulate cell function. An overview of techniques to present peptides and proteins from materials, and the utility of these systems in engineering tissues in vitro and in vivo is presented.
Some New Aspects of Thiepine and Thiazepine Chemistry (1989)

Abstract 1) 1-Benzothiepineiron tricarbonyl was synthesized as a first example of thiepine-metal complex. On oxidation and decomplexation the complex gave 1-benzothiepine 1-oxide as thermally labile compound. 2) Thermolysis of a stable monocyclic thiepine gave the sulfur extruded benzene derivative together with the sulfurated product, the structure of which was confirmed by X-ray analysis. 3) The ring expansion reaction of 2,6-di-tert-butyl-4-azido-4-R-thiopyrans resulted in the formation of 1,3-thiazepine derivatives instead of the expected 1,4-thiazepines.
Regio- and Enantioselective Iridium-Catalyzed Intermolecular Allylic Etherification of Achiral Allylic Carbonates with Phenoxides (2003)

An enantioselective and regioselective iridium-catalyzed allylic etherification is described. The reaction of sodium and lithium aryloxides with achiral (E)-cinnamyl and terminal aliphatic allylic electrophiles in the presence of 2 mol % of an iridium-phosphoramidite complex provides chiral allylic aryl ethers in high yields and excellent levels of regio- and enantioselectivity. Lithium aryloxides containing a single substituent at an ortho, meta, or para position as well as sterically hindered phenoxides were tolerated. Reactions in THF displayed the most suitable balance of rate, regio-, and enantioselectivity. High ee's were also observed for the products from the reaction of alkyl (E)-allylic carbonates.
Pericyte biology and diseases. (2005)

Microvessels are composed of two types of cells: endothelial cells and pericytes. Pericytes are elongated cells of mesodermal origin that partially surround the endothelial cells of small vessels. As pericytes contain contractile muscle filaments on their endothelial cell side, they have long been regarded as just microvascular counterparts of smooth muscle cells, thus being implicated in the regulation of capillary tone. However recent understanding of pericyte biology suggests that pericytes play an important role in the maintenance of microvascular homeostasis. Indeed, loss or dysfunction of pericytes has been considered to play an active part in the pathogenesis of various types of disorders. In this study, we review the biology of pericytes and the pathological role of pericyte loss or dysfunction in various devastating disorders such as diabetic retinopathy, atherosclerosis and tumor angiogenesis
ON ESTERS OF p-TOLUENESULFONIC ACID (1944)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTON ESTERS OF p-TOLUENESULFONIC ACIDR. STUART TIPSONCite this: J. Org. Chem. 1944, 09, 3, 235–241Publication Date (Print):May 1, 1944Publication History Published online1 May 2002Published inissue 1 May 1944https://pubs.acs.org/doi/10.1021/jo01185a005https://doi.org/10.1021/jo01185a005research-articleACS PublicationsRequest reuse permissionsArticle Views3036Altmetric-Citations172LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Rheology: Principles, Measurements, and Applications (1994)

Serving as both a reference and a textbook on rheology and rheological phenomena, this text enables students to retrieve worked examples, experienced rheologists to find references to the rheological techniques currently available, and readers who are primarily interested in using rheology to help solve a specific and immediate problem find a chapter of interest in the section on applications of rheology. This text tackles the tensor in such a way as to make the problems accessible and understandable - by simplifying notation and making the three-dimensional approach to rheology practical. Some exercises are included, with solutions at the end of the book. The text is suitable for students, engineers in the polymer industry and mechanical engineers.
Dengue virus type 1 DNA vaccine induces protective immune responses in rhesus macaques (2000)

A candidate DNA vaccine expressing dengue virus type 1 pre-membrane and envelope proteins was used to immunize rhesus macaques. Monkeys were immunized intramuscularly (i.m.) or intradermally (i.d.) by three or four 1 mg doses of vaccine, respectively. Monkeys that were inoculated i.m. seroconverted more quickly and had higher antibody levels than those that were inoculated i.d. The sera exhibited virus-neutralizing activity, which declined over time. Four of the eight i.m.-inoculated monkeys were protected completely from developing viraemia when challenged 4 months after the last dose with homologous dengue virus. The other four monkeys had reduced viraemia compared with the control immunized monkeys. The i.d. -inoculated monkeys showed no reduction in viraemia when challenged with the virus. All vaccinated monkeys showed an anamnestic antibody response, indicating that they had established immunological memory. Vaccine-induced antibody had an avidity index similar to that of antibody induced by virus infection; however, no clear correlation was apparent between antibody avidity and virus neutralization titres.