gebhart/patrepeval huggingface dataset:
Functional connectivity as revealed by spatial independent component analysis of fMRI measurements during rest (2004)

Cortical functional connectivity, as indicated by the concurrent spontaneous activity of spatially segregated regions, is being studied increasingly because it may determine the reaction of the brain to external stimuli and task requirements and it is reportedly altered in many neurological and psychiatric disorders. In functional magnetic resonance imaging (fMRI), such functional connectivity is investigated commonly by correlating the time course of a chosen "seed voxel" with the remaining voxel time courses in a voxel-by-voxel manner. This approach is biased by the actual choice of the seed voxel, however, because it only shows functional connectivity for the chosen brain region while ignoring other potentially interesting patterns of coactivation. We used spatial independent component analysis (sICA) to assess cortical functional connectivity maps from resting state data. SICA does not depend on any chosen temporal profile of local brain activity. We hypothesized that sICA would be able to find functionally connected brain regions within sensory and motor regions in the absence of task-related brain activity. We also investigated functional connectivity patterns of several parietal regions including the superior parietal cortex and the posterior cingulate gyrus. The components of interest were selected in an automated fashion using predefined anatomical volumes of interest. SICA yielded connectivity maps of bilateral auditory, motor and visual cortices. Moreover, it showed that prefrontal and parietal areas are also functionally connected within and between hemispheres during the resting state. These connectivity maps showed an extremely high degree of consistency in spatial, temporal, and frequency parameters within and between subjects. These results are discussed in the context of the recent debate on the functional relevance of fluctuations of neural activity in the resting state.
Broad Tuning of Rat Taste Cells for Four Basic Taste Stimuli (1997)

The breadth of responsiveness of rat taste cells to the four basic taste stimuli was studied using the entropy measure (H) proposed by Smith and Travers. H values range from 0.0 for narrow tuning to 1.0 for broad tuning. Based on the responses of depolarizing receptor potentials of 26 rat taste cells to the four basic taste stimuli, taste cells were classified into nine NaCl-best, four Q-HCl (quinine-HCl)-best, 10 HCl-best and three sucrose-best cells. NaCl-best cells were narrowly tuned to the four basic taste stimuli, but the other three stimuli-best cells were broadly tuned to the stimuli. In all, 85% of the taste cells responded to more than one of four basic taste stimuli. The mean H values for NaCl-best, Q-HCl-best, HCl-best and sucrose-best cells were 0.285, 0.832, 0.781 and 0.796 respectively. The mean H value for all 26 taste cells was 0.621. This was larger than H in rat gustatory fibers. Transformation of large H values in taste cells into small H values in taste fibers may be due to a non-random interaction between taste cells and taste fibers during the synaptic formation. Broad tuning properties of rat taste cells suggest that the across-taste cell response pattern may play an important role in taste quality coding mechanisms.
Dinámica poblacional de Haematobia irritans en un hato de bovinos de Soto la Marina, Tamaulipas, México (2001)

Se realizó un estudio transversal de frecuencia con el objetivo de buscar larvas enquistadas viables de Trichinella spiralis en carne de cerdo que se comercializa en mercados públicos, carnicerías y tianguis (mercados ambulantes) de la ciudad de México. Se examinaron 500 muestras de carne de cerdo de 100 g cada una, 165 se obtuvieron en carnicerías establecidas, 208 en mercados públicos y 127 en tianguis ubicados en las 16 delegaciones políticas que conforman la ciudad de México. De cada muestra de carne se tomaron cinco fragmentos a diferentes niveles, todas las muestras fueron de 1 g cada una para su examen mediante triquinoscopía utilizando microscopios Carl Zeiss con objetivos seco-débil y seco-fuerte. Los 2 500 cortes de carne de cerdo examinados resultaron negativos a la presencia de larvas de Trichinella spiralis. Este resultado sugiere que es mínimo el riesgo de adquisición de triquinelosis para el consumidor de carne de cerdo que se expende en la ciudad de México.
Synergistic Interaction between Sphingomyelin and Gemcitabine Potentiates Ceramide-Mediated Apoptosis in Pancreatic Cancer (2004)

We have examined the mechanism by which sphingomyelin (SM) enhances chemotherapy in human pancreatic cancer cells, focusing on the correlation between ceramide metabolism and apoptosis. Dose response curves for gemcitabine in the absence or presence of 0.2 mg/mL SM provided IC(50) values of 78.3 +/- 13.7 and 13.0 +/- 3.0 nmol/L, respectively. The cytotoxic effect of the combined treatment was synergistic (combination index = 0.36). Using annexin-V staining, the percentage of apoptotic cells was 3.6 +/- 2.6% for the untreated cells, 6.5 +/- 3.8% for the 0.2 mg/mL SM-treated cells, and 19.9 +/- 12.9% for the 100 nmol/L gemcitabine-treated cells, but increased significantly to 42.1 +/- 12.7% with the combined treatment (P < 0.001, compared with gemcitabine-treated group). The percentage of cells losing mitochondrial membrane potential followed a similar trend. The ceramide content of untreated and gemcitabine-treated cells was not significantly different (0.46 +/- 0.29 and 0.59 +/- 0.34 pmol ceramide/nmole PO(4)). However, when 0.2 mg/mL SM was added, ceramide levels were 1.09 +/- 0.42 and 1.58 +/- 0.55 pmol ceramide/nmol PO(4), for the SM alone and SM with gemcitabine-treated cells, respectively (P = 0.038). Acidic SMase was activated by exposure to gemcitabine but not SM, whereas the activities of neutral SMase and glycosylceramide synthase did not change with either gemcitabine or SM. The data are consistent with gemcitabine-induced activation of acidic SMase and indicate that the addition of SM can yield increased production of ceramide, mitochondrial depolarization, apoptosis, and cell death. Because SM by itself is relatively nontoxic, addition of this lipid to agents that induce apoptosis may prove useful to enhance apoptosis and increase cytotoxicity in cancer cells.
Redeeming the Text: Latin Poetry and the Hermeneutics of Reception (1995)

1. Five concepts in search of an author: suite 2. Rereading Virgil: divertimento 3. Rereading Ovid and Lucan: cadenzas 4. Translation as rereading: symphony in three movements Postscript: redeeming the text, or a lover's discourse.
Dendritic cell maturation by CD11c− T cells and Vα24+ natural killer T‐cell activation by α‐Galactosylceramide (2005)

Human invariant Valpha24+ natural killer T (NKT) cells display potent antitumor activity upon stimulation. Activation of endogenous Valpha24+ NKT cells would be one strategy for the treatment of cancer patients. For example, dendritic cells (DCs) loaded with a glycolipid NKT cell ligand, alpha-galactosylceramide (alphaGalCer, KRN7000), are a possible tool for the activation and expansion of functional Valpha24+ NKT cells in vivo. In this report, we demonstrate that the levels of expansion and the ability to produce IFN-gamma of Valpha24+ NKT cells induced by alphaGalCer-loaded whole PBMCs cultured with IL-2 and GM-CSF (IL-2/GM-CSF-cultured PBMCs) were superior to those of cells induced by monocyte-derived CD11c+ DCs (moDCs) developed with IL-4 and GM-CSF. Interestingly, CD11c+ cells in the IL-2/GM-CSF-cultured PBMCs showed a mature phenotype without further stimulation and exerted potent stimulatory activity on Valpha24+ NKT cells to enable them to produce IFN-gamma preferentially at an extent equivalent to mature moDCs induced by stimulation with LPS or a cytokine cocktail. Cocultivation with CD11c- cells in the IL-2/GM-CSF-cultured PBMCs induced maturation of moDCs. In particular, CD11c-CD3+ T cells appeared to play important roles in DC maturation. In addition, TNF-alpha was preferentially produced by CD11c-CD3+ T cells in IL-2/GM-CSF-cultured PBMCs and was involved in the maturation of moDCs. Thus, the maturation of DCs induced by CD11c- T cells through TNF-alpha production appears to result in the efficient expansion and activation of Valpha24+ NKT cells to produce IFN-gamma preferentially.
Fourier ptychographic microscopy for filtration-based circulating tumor cell enumeration and analysis (2014)

Circulating tumor cells (CTCs) are recognized as a candidate biomarker with strong prognostic and predictive potential in metastatic disease. Filtration-based enrichment technologies have been used for CTC characterization, and our group has previously developed a membrane microfilter device that demonstrates efficacy in model systems and clinical blood samples. However, uneven filtration surfaces make the use of standard microscopic techniques a difficult task, limiting the performance of automated imaging using commercially available technologies. Here, we report the use of Fourier ptychographic microscopy (FPM) to tackle this challenge. Employing this method, we were able to obtain high-resolution color images, including amplitude and phase, of the microfilter samples over large areas. FPM's ability to perform digital refocusing on complex images is particularly useful in this setting as, in contrast to other imaging platforms, we can focus samples on multiple focal planes within the same frame despite surface unevenness. In model systems, FPM demonstrates high image quality, efficiency, and consistency in detection of tumor cells when comparing corresponding microfilter samples to standard microscopy with high correlation (R² = 0.99932). Based on these results, we believe that FPM will have important implications for improved, high throughput, filtration-based CTC analysis, and, more generally, image analysis of uneven surfaces.
Contribution of direct and indirect recognition pathways to T cell alloreactivity. (1993)

T cells from an HLA-DR11/DR12 responder were stimulated in mixed lymphocyte culture with cells carrying the DR1 antigen. After priming, T cells proliferated in response to both DR1-positive-stimulating cells and a peptide derived from a polymorphic region of the HLA-DR beta 1*0101 chain presented by responder's antigen-presenting cells (APC). The dominant epitope recognized by the primed T cells corresponded to residue 21-42 and was presented by the responder's HLA-DR12 antigen. The DR1 peptide-reactive T cells express T cell receptor V beta 3. The results demonstrate that allopeptides derived from the processing and presentation of donor major histocompatibility complex molecules by host-derived APC trigger alloreactivity. The frequency of T cells engaged in the indirect pathway of allorecognition is about 100-fold lower than that of T cells participating in the direct recognition of native HLA-DR antigen. However, indirect allorecognition may play an important role in chronic allograft rejection, a phenomenon that is mediated by the activation of T helper cells and of alloantibody-producing B cells.
Decreased Glucocorticoid Receptor Activity Following Glucocorticoid Receptor Antisense RNA Gene Fragment Transfection (1991)

Depression is often characterized by increased cortisol secretion caused by hyperactivity of the hypothalamic-pituitary-adrenal axis and by nonsuppression of cortisol secretion following dexamethasone administration. This hyperactivity of the hypothalamic-pituitary-adrenal axis could result from a reduced glucocorticoid receptor (GR) activity in neurons involved in its control. To investigate the effect of reduced neuronal GR levels, we have blocked cellular GR mRNA processing and/or translation by introduction of a complementary GR antisense RNA strand. Two cell lines were transfected with a reporter plasmid carrying the chloramphenicol acetyltransferase (CAT) gene under control of the mouse mammary tumor virus long terminal repeat (a glucocorticoid-inducible promoter). This gene construction permitted assay of the sensitivity of the cells to glucocorticoid hormones. Cells were also cotransfected with a plasmid containing 1,815 bp of GR cDNA inserted in the reverse orientation downstream from either a neurofilament gene promoter element or the Rous sarcoma virus promoter element. Northern (RNA) blot analysis demonstrated formation of GR antisense RNA strands. Measurement of the sensitivity of CAT activity to exogeneous dexamethasone showed that although dexamethasone increased CAT activity by as much as 13-fold in control incubations, expression of GR antisense RNA caused a 2- to 4-fold decrease in the CAT response to dexamethasone. Stable transfectants bearing the GR antisense gene fragment construction demonstrated a 50 to 70% decrease of functional GR levels compared with normal cells, as evidenced by a ligand-binding assay with the type II glucocorticoid receptor-specific ligand [3H]RU 28362. These results validate the use of antisense RNA to GR to decrease cellular response to glucocorticoids.
Screening Experiments for Butyl Acrylate/Vinyl Acetate Pressure-Sensitive Adhesives (2005)

Emulsion-based pressure-sensitive adhesives (PSAs) are gaining in importance due to their improved performance as well as the lower environmental impact of the emulsion polymerization process. In this study, the influence of eight emulsion polymerization variables on the final PSA properties of butyl acrylate/vinyl acetate (BA/VAc) emulsion-based PSAs was investigated (i.e., BA/VAc ratio, acrylic acid content, type and concentration of stabilizer, concentration of initiator, concentration of CTA, temperature, solids content). Final performance properties such as peel strength, shear strength, and tack were investigated on two different substrates: stainless steel and high-density polyethylene. A wide range of properties was generated ranging from very good to poor PSA performance. The screening design fulfilled its purpose in that it was used to generate a wide range of final properties. The results obtained here will be used in the decision-making process for further experimentation. However, for several reasons, the development of empirical models to relate the process conditions to the final product properties was not possible. In all three adhesive tests, the performance of the investigated adhesives was superior on the stainless steel substrate compared to high-density polyethylene. Most of the adhesives showed relatively high loop tack coupled with either adhesive or cohesive failure on both substrates. In most cases, peel strength was higher on stainless steel. A broad range of shear strength responses was observed: extremely high, on the order of several weeks, to zero shear strength. The chain transfer agent, which regulated the gel content of the emulsion latexes and the molecular weight of the soluble polymer fraction as well as the monomer feed composition, was suspected to be among the most influential factors affecting the final PSA performance. In addition, it was possible to obtain balanced final properties using either sodium dodecyl sulfate or poly(vinyl alcohol) as surfactant but at different concentrations.
<title>Wavelength ratiometric fluorescent probes for glucose</title> (2002)

We have developed a new series of glucose sensitive fluorophores that display shifts in emission wavelengths upon the binding of glucose. Complexation of glucose with the boronic acid moiety changes both its orbital hybridization and its ability to accept and donate electrons. This change results in distinct emission spectra for the fluorophores when free in solution or complexed with glucose.
Multi-Modal Analysis of Human Motion From External Measurements (2001)

The “analysis” or “inverse dynamics” problem in human motion studies assumes knowledge of the motion of the dynamical system in various forms and/or measurements of ground reaction forces to determine the applied forces and moments at the joints. Conceptually, methods of attacking such problems are well developed and satisfactory solutions have been obtained if the input signals are noise free and the dynamic model is perfect. In this ideal case, an inverse solution exists, is unique, and depends continuously on the initial data. However, the inverse solution may require the calculation of higher order derivatives of experimental observations contaminated by noise—a notoriously difficult problem. The byproduct of errors due to numerical differentiation is grossly erroneous joint force and moment calculations. This paper provides a framework for analyzing human motion for different sensing conditions in a manner that avoids or minimizes the number of derivative computations. In particular, two sensing modalities are considered: 1) image based and 2) multi-modal sensing: combining imaging, force plate, and accelerometery.
Direct visualization of cytomegalovirus-specific T-cell reconstitution after allogeneic stem cell transplantation (2001)

Cytomegalovirus (CMV) remains an important cause of morbidity and mortality after allogeneic stem cell transplantation (SCT), but cytotoxic T lymphocytes (CTL) may play a critical role in controlling CMV reactivation. Fluorescent HLA-peptide tetramers containing immunodominant peptides from CMV were used to prospectively monitor the recovery of CMV CTL in recipients of allogeneic transplants from siblings (n = 13) or unrelated donors (n = 11). In patients given allografts from a sibling when both the patient and donor were seropositive for CMV before SCT, recovery of CMV-specific CTL was rapid and reached up to 21% of all CD8(+) T cells. Early reconstitution of CMV-specific immunity was not observed if either the donor or recipient was seronegative for CMV. In recipients of transplants from volunteer unrelated donors, recovery of CMV-specific CTL was delayed in comparison to that in recipients of transplants from siblings and no CTL were observed within the first 100 days after SCT. CTL numbers were increased after episodes of CMV reactivation but were suppressed by prednisolone therapy. Recovery of CMV-specific CTL to levels greater than 10 x 10(6)/L was associated with protection from CMV disease. It was concluded that use of HLA-peptide tetramers to quantify CMV CTL is valuable for studying T-cell responses after allogeneic SCT. It should allow prediction of CMV reactivation in individual patients and assist in the development of adoptive T-cell immunotherapy.
Recombinant factorIX: discrepancies between one‐stage clotting and chromogenic assays (2014)

New and modified recombinant factor IX (rFIX) products are in development and accurate potency estimation is important to ensure the consistency of production and efficacy of these therapeutics. Collaborative study data obtained during the replacement of the 3rd International Standard (IS) for FIX concentrate suggested that there was a discrepancy between potency estimates for rFIX using clotting and chromogenic methods, when the rFIX candidate was measured against the plasma-derived FIX (pdFIX) IS. This study explores potential chromogenic and one-stage clotting method discrepancies in more detail. Five batches each of rFIX and pdFIX were assayed against the 4th IS FIX concentrate (a pdFIX) by activated partial thromboplastin time (APTT) one-stage clotting assay and specific functional chromogenic assay. The potency of rFIX by chromogenic assay was consistently around 70% of the one-stage clotting potency (average 78 and 108 IU mL(-1) respectively). These differences were not observed with pdFIX, which had similar potencies (average 96 IU mL(-1) ) by each assay method. In addition, different APTT reagents yielded different potency estimates for rFIX when assayed against the pdFIX IS, with a variation of up to 23%. In all cases, the differences were largely resolved when a rFIX reference was used as the standard. This study highlights some of the challenges associated with assay of rFIX products in the laboratory and that careful consideration needs to be given to the choice of reference material used. This is especially important with the imminent arrival of new and modified rFIX products.
Effects of the Amount and Intensity of Exercise on Plasma Lipoproteins (2002)

The highest amount of weekly exercise, with minimal weight change, had widespread beneficial effects on the lipoprotein profile. The improvements were related to the amount of activity and not to the intensity of exercise or improvement in fitness.
Identification of a respiratory related area in the rat insular cortex (2000)

The aim of this study was to map areas within the rat insular cortex from which respiratory responses originate and compare those sites with gastrointestinal control regions. The insular cortex was systematically microstimulated and histological location of responsive sites determined. Increased inspiratory airflow and decreased respiratory cycle duration were considered to be respiratory excitatory responses. The responses were localized in dysgranular and agranular insular cortex at levels caudal to the joining of the anterior commissure. More rostrally, respiratory inhibitory responses were elicited: these were manifested as a decrease in inspiratory airflow without a significant alteration in respiratory cycle duration. Respiratory inhibitory responses were usually accompanied by changes in gastric motility. These results suggest that the respiratory area in the rat insular cortex consist of two distinct zones which overlap a region modulating the gastrointestinal activity.
Brain histamine in Alzheimer's disease. (1989)

The concentration of histamine (HA) has been determined by high-performance liquid chromatography (HPLC) with fluorometric detection in 21 different regions of brains from patients with senile dementia of the Alzheimer type (SDAT) and subjects (CB) whose causes of death were not related to neuropsychiatric, neurological and/or neurodegenerative diseases. The highest levels of HA in the central nervous system (CNS) of both control (CB) and SDAT samples were found in the posterior hypothalamus (CB = 3.13 +/- 0.63 pmol/mg; SDAT = 7.75 +/- 1.43 pmol/mg, p less than 0.005), where the HA neurons are located, and in the anterior hypothalamus (CB = 1.77 +/- 0.33 pmol/mg; SDAT = 2.82 +/- 0.45 pmol/mg, p less than 0.005). The lowest HA levels were detected in the cerebellum (CB = 0.12 +/- 0.04 pmol/mg; SDAT = 0.24 +/- 0.09 pmol/mg, p less than 0.01) and medulla oblongata. HA levels were significantly higher in SDAT than in CB in the following areas: motor cortex (Brodmann's area 4) (A4), premotor cortex (A6), postcentral gyrus (A1,2), posterior parietal cortex (A5,7), superior temporal gyrus (A41,42), temporal pole (A38), primary and secondary visual cortices (A17,18), anterior and posterior regions of the hypothalamus, putamen, caudate nucleus, nucleus accumbens, thalamus, hippocampus, pons, medulla oblongata and cerebellum. No changes were seen in globus pallidus and corpus callosum. Since the origin of HA in the brain is dependent upon three main compartments (neuronal, mast cell, vascular smooth muscle), with approximately 60-80% of the total HA belonging to the neuronal pool, on the basis of neurochemical data we postulate that the increase in the levels of HA in SDAT might account for or be associated with alterations in neuroendocrine, cognitive, neurovascular and sleep-wakefulness functions.