gebhart/patrepeval huggingface dataset:
Morphological Changes Of The 3T3-L1 Fibroblast Plasma Membrane Upon Differentiation To The Adipocyte Form (1983)

By quantitative evaluation carried out on freeze-fracture replicas, we have investigated the changes in plasma membrane organization as the 3T3-L1 fibroblast phenotype differentiates into the 3T3-L1 adipocyte form. As differentiation takes place there is a dramatic change in overall appearance of the cell as it acquires large lipid-laden vacuoles. On freeze-fracture replicas we find: (1) a ninefold increase in small invaginations as the cell differentiates from the fibroblast to the adipocyte phenotype; (2) virtually no quantitative change in the larger coated invaginations upon differentiation; (3) a greater density of intramembrane particles in the large invaginations as compared to the uninvaginated membrane in both the fibroblast and adipocyte form. This remains relatively constant with differentiation. By contrast, there is a marked increase of intramembrane particles in the undifferentiated membrane as the cell changes from fibroblast to adipocyte. The functional significance of these changes in plasma membrane organization is unknown, but they significantly correlate with the onset of lipogenesis by the cell.
Semisynthesis of a Homogeneous Glycoprotein Enzyme: Ribonuclease C: Part 1 (2009)

Seven in one blow: The efficient formation of mixed disulfides on the thiol-rich fusion protein A followed by subsequent intein cleavage gave the fragment B with all seven cysteines protected against oxidation. The native chemical ligation of B with synthetic glycopeptide thioesters provides glycoproteins.
Immortalized Human Brain Endothelial Cell Line HCMEC/D3 as a Model of the Blood-Brain Barrier Facilitates In Vitro Studies of Central Nervous System Infection by Cryptococcus neoformans (2009)

Cryptococcus neoformans cells must cross the blood-brain barrier prior to invading the central nervous system. Here we demonstrate that the immortalized human brain endothelial cell line HCMEC/D3 is a useful alternative to primary brain endothelial cells as a model of the blood-brain barrier for studies of central nervous system infection.
Stem cell labeling for magnetic resonance imaging (2008)

In vivo applications of cells for the monitoring of their cell dynamics increasingly use non-invasive magnetic resonance imaging. This imaging modality allows in particular to follow the migrational activity of stem cells intended for cell therapy strategies. All these approaches require the prior labeling of the cells under investigation for excellent contrast against the host tissue background in the imaging modality. The present review discusses the various routes of cell labeling and describes the potential to observe both cell localization and their cell-specific function in vivo. Possibilities for labeling strategies, pros and cons of various contrast agents are pointed out while potential ambiguities or problems of labeling strategies are emphasized.
Cathepsin B expression and localization in glioma progression and invasion. (1994)

The poor prognosis of human malignant gliomas is due to their invasion and recurrence, the molecular mechanisms of which remain poorly characterized. We have accumulated substantial evidence implicating the cysteine protease cathepsin B in human glioma malignancy. Increases in cathepsin B expression were observed throughout progression. In primary brain tumor tissue, transcript abundance (Northern blot analysis) increased in low-grade astrocytoma to high-grade glioblastoma from 3- to 6-fold, respectively, above normal brain levels. This increase correlated with increases in protein abundance (from + to ) as measured by immunohistochemistry. Furthermore, in glioblastoma cell lines increases in transcript abundance (ranging from 3- to 12-fold) were accompanied by increases in enzyme activity (44-133 nmol/min x mg protein). Altered subcellular localization was observed both immunohistochemically and by indirect immunofluorescence confocal microscopy and was found to correlate with increased grade. In addition, this increase in cathepsin B expression and altered subcellular localization correlated with histomorphological invasion and clinical evidence of invasion as detected by magnetic resonance imaging. These data support the hypothesis that cathepsin B plays a role in human glioma progression and invasion.
Studies in Red Blood Cell Preservation - 3. A Phosphate-Ammonium-Adenine Additive Solution (1990)

The maintenance of adenosine triphosphate (ATP) in red blood cells (RBC) during storage is largely dependent on the integrity of glycolytic metabolism in the Embden-Meyerhof pathway. Meryman et al. [Transfusion 1986;26:500-505] hypothesized that a solution that increased the surface tension of the corpuscles through hypotonic swelling might retard the development of echinocytosis and membrane loss by the shedding of exocytic vesicles. Unexpectedly, maintenance of good ATP levels and satisfactory RBC survivals were found for as long as 18 weeks. The purpose of our study was to test their observations and to explore the possible mechanisms. Equal parts of units of packed RBC were stored in the experimental preservative and, for comparison, in ADSOL®. The most notable findings were ATP values at 4 weeks averaging 5.2 μmol/g Hb (130% of initial) and at 12 weeks 2.9 μmol/g Hb (73% of initial), whereas these values declined as expected in ADSOL. Mean RBC diameters and surface areas by morphometric analysis were not significantly different in the two preservatives indicating the absence of any hypotonic swelling. The morphology scores of the RBC were significantly better throughout (p<0.05) than in ADSOL. The shedding of exocytic hemoglobin-containing vesicles was essentially the same in both preservatives. Our data confirm the observation that ATP levels are well maintained for at least 12 weeks, but do not show any evidence that hypotonic swelling was a part of the mechanism.
Calcitriol Suppresses Antiretinal Autoimmunity through Inhibitory Effects on the Th17 Effector Response (2009)

Experimental autoimmune uveitis (EAU) serves as a model for human autoimmune uveitis and for cell-mediated autoimmunity in general. EAU induced in mice by immunization with the retinal Ag interphotoreceptor retinoid-binding protein in CFA is driven by the Th17 response. Oral calcitriol (1,25-dihydroxyvitamin D(3)) prevented as well as partly reversed disease and suppressed immunological responses. In vitro, calcitriol directly suppressed IL-17 induction in purified naive CD4(+) T cells without inhibiting Th17 lineage commitment, as reflected by unaltered RORgammat, STAT3, and FoxP3 expression. In contrast, in vivo treatment with calcitriol of mice challenged for EAU impaired commitment to the Th17 lineage, as judged by reduction of both RORgammat and IL-17 in CD4(+) T cells. Innate immune response parameters in draining lymph nodes of treated mice were suppressed, as was production of IL-1, IL-6, TNF-alpha, and IL-12/IL-23p40, but not IL-10, by explanted splenic dendritic cells (DC). Finally, supernatants of calcitriol-conditioned bone marrow-derived DC had reduced ability to support Th17 polarization of naive CD4(+) T cells in vitro and in vivo. Thus, calcitriol appears to suppress autoimmunity by inhibiting the Th17 response at several levels, including the ability of DC to support priming of Th17 cells, the ability of CD4(+) T cells to commit to the Th17 lineage, and the ability of committed Th17 T cells to produce IL-17.
Preparation, detection, and characterization of an antibody to rat .alpha.-phosphophoryn (1985)

The phosphophoryn components of rat incisor dentin were extracted under stringent conditions to prevent proteolytic degradation during processing. Successive steps of CaCl2 precipitation, ion-exchange chromatography, and gel filtration over Biosil TSK G4000SW high-performance liquid chromatography columns in 4.0 M guanidine hydrochloride yielded a mixture of phosphoryns that contained only trace amounts of other proteins, as shown by a very sensitive double stain procedure on acrylamide gels after electrophoresis. The highest weight phosphophoryn had a molecular weight of 90 000, on gradient polyacrylamide gels calibrated with globular protein standards. Polyclonal antibodies were produced in rabbits following a complex scheme. The specific antibodies were collected by passage over a Sepharose column conjugated to the purified phosphophoryn. The isolated antibody was used to prepare a second affinity column. Passage of the initial phosphophoryn fraction over the column led to the retention of a single component, identified as the Mr 90 000 alpha-phosphophoryn. Thus, a monospecific polyclonal antibody has been prepared. These data show that the other phosphoryns of the rat incisor must be distinct species or slightly degraded products of the alpha-phosphophoryn lacking the antigenic epitope of the antibody prepared.
Protein-Protein Interactions (2004)

As the mysteries stored in our DNA have been more completely revealed, scientists have begun to face the extraordinary challenge of unraveling the int- cate network of protein–protein interactions est
Self-propelling slugs (2002)

Surface coating is generally achieved by an active operation: painting with a brush; withdrawing from a bath. Porous imbibition constitutes a more passive way: a porous material just put in contact with a reservoir containing a wetting fluid is spontaneously invaded. In this case, the material can eventually be filled by the fluid. If the aim is to coat only the surface of the pores, the liquid excess must be actively removed. We present an experiment in which a liquid train spontaneously moves in a capillary tube because of the trail it leaves behind. From a practical point of view, this system achieves a coating of the tube. The condition required for this motion and a model for its dynamics are presented. We also show how these trains can drive extremely viscous liquid slugs (or even solid bodies) in narrow tubes. We discuss the thickness of the deposited films. Extensions and limits of this system in more complex geometries are finally described, together with special cases such as the deposition of solid films.
A randomized controlled phase III trial of recombinant human granulocyte colony-stimulating factor (filgrastim) for treatment of severe chronic neutropenia (1993)

Patients with idiopathic, cyclic, and congenital neutropenia have recurrent severe bacterial infections. One hundred twenty-three patients with recurrent infections and severe chronic neutropenia (absolute neutrophil count < 0.5 x 10(9)/L) due to these diseases were enrolled in this multicenter phase III trial. They were randomized to either immediately beginning recombinant human granulocyte colony-stimulating factor (filgrastim) (3.45 to 11.50 micrograms/kg/d, subcutaneously) or entering a 4-month observation period followed by filgrastim administration. Blood neutrophil counts, bone marrow (BM) cell histology, and incidence and duration of infection-related events were monitored. Of the 123 patients enrolled, 120 received filgrastim. On therapy, 108 patients had a median absolute neutrophil count of > or = 1.5 x 10(9)/L. Examination of BM aspirates showed increased proportions of maturing neutrophils. Infection-related events were significantly decreased (P < .05) with approximately 50% reduction in the incidence and duration of infection-related events and almost 70% reduction in duration of antibiotic use. Asymptomatic splenic enlargement occurred frequently; adverse events frequently reported were bone pain, headache, and rash, which were generally mild and easily manageable. These data indicate that treatment of patients with severe chronic neutropenia with filgrastim results in a stimulation of BM production and maturation of neutrophils, an increase in circulating neutrophils, and a reduction in infection-related events.
Multifocality predicts poor outcome of patients with insular thyroid cancer: a clinicopathological study. (2015)

Insular thyroid carcinoma (ITC) is a rare type of thyroid malignancy whose aggressiveness and propensity to local recurrence differentiate it from other thyroid malignancies. However, data pertaining to its clinical characteristics is still lacking. In this study, we retrospectively analyzed 10 ITC patients treated and followed in Tianjin Medical University Cancer Institute and Hospital during Apr 2007 to Aug 2010, and compared the clinical and pathological characteristics and long-term follow-up with 2220 patients with papillary thyroid carcinoma (PTC). These ten ITC cases comprised 7 women and 3 men, of whom 6 patients are multifocal ITC (mITC) and showed cervical lymph node metastasis to the lateral compartment, while the other 4 solitary ITC (sITC) had regional metastasis confined to level VI or even no cervical metastasis. The ITC group had more frequent retrosternal metastasis (40% vs. 7.5%), recurrent laryngeal nerve invasion (40% vs. 4.4%), esophageal invasion (50% vs. 1.9%), a higher proportion of distant metastasis (50% vs. 3.2%), and vascular invasion (50% vs. 1.0%). While the presence of lymph node metastasis showed no significant difference. Interestingly, although patients with ITC are lacking in number to perform survival analysis, we still noticed that all the four sITC patients (4/4, 100%) have survived much longer (at least 45 months) than those who have multinodularity (mITC, 5/6, 83.3%). Our results indicated that ITC is an aggressive disease and the presence of multifocality might be a risk factor for long time survival of ITC patients.
Adaptive compressive engine for real‐time electrocardiogram monitoring under unreliable wireless channels (2016)

Traditional compressive sensing (CS) methods assume the data sparsity to be constant over time, which holds well in many long‐term scenarios. However, the authors’ recent study on electrocardiogram (ECG) monitoring reveals that data sparsity varies dramatically for real‐time monitoring systems where the data latency must be bounded, due to limited data collected within the delay bound. The variation of data sparsity makes the reconstruction error (RE) unstable. Furthermore, the variation of wireless channel quality also impacts the reconstruction quality. To accommodate both variations, this study proposes a novel adaptive feedback architecture for real‐time wireless ECG monitoring based on the CS technique, which can bound the REs in the presence of the variations of data sparsity and wireless channel. An experiment testbed has been built to evaluate the performance of the proposed system. The results show that the data latency can be limited to &lt;300 ms and the RE can be controlled to 9%.
Selection of Quantum Dot Wavelengths for Biomedical Assays and Imaging (2003)

Fluorescent semiconductor nanocrystals (quantum dots [QDs]) are hypothesized to be excellent contrast agents for biomedical assays and imaging. A unique property of QDs is that their absorbance increases with increasing separation between excitation and emission wavelengths. Much of the enthusiasm for using QDs in vivo stems from this property, since photon yield should be proportional to the integral of the broadband absorption. In this study, we demonstrate that tissue scatter and absorbance can sometimes offset increasing QD absorption at bluer wavelengths, and counteract this potential advantage. By using a previously validated mathematical model, we explored the effects of tissue absorbance, tissue scatter, wavelength dependence of the scatter, water-to-hemoglobin ratio, and tissue thickness on QD performance. We conclude that when embedded in biological fluids and tissues, QD excitation wavelengths will often be quite constrained, and that excitation and emission wavelengths should be selected carefully based on the particular application. Based on our results, we produced near-infrared QDs optimized for imaging surface vasculature with white light excitation and a silicon CCD camera, and used them to image the coronary vasculature in vivo. Taken together, our data should prove useful in designing fluorescent QD contrast agents optimized for specific biomedical applications.
Blade atrial septostomy: collaborative study. (1982)

During the past 4 years, five institutions have collaborated in evaluating the efficacy of blade atrial septostomy. The procedure was performed in 52 patients, including 31 with transposition of the great arteries, 10 with mitral atresia, five with tricuspid atresia and six with miscellaneous anomalies. The patient's ages ranged from 1 day to 12 years (mean 13 months). Improvement occurred in 41 of 52 patients (79%). Four patients had an intact interatrial septum, and blade atrial septostomy was successfully performed by a transseptal technique. One patient died from a lacerated left atrial wall; other complications occurred in four patients. Blade atrial septostomy is an effective palliative procedure, even when the interatrial septum is thickened or intact.
Comprehensive Textbook of Oncology (1991)

Concepts of cancer biology normal and cancer cell biology etiology of neoplasia molecular biology of cancer genetics tumor immunology molecular biology of tumor progression concepts of cancer evaluation epidemiology, prevention and screening patient evaluation and staging techniques of pathological evaluation-overview diagnostic imaging in cancer diagnosis concepts of cancer therapy kinetics and trials design principles of surgical therapy radiation therpay chemo-therapy other therapeutic approaches to specific neoplasms thoracic neoplasms breast cancer neoplasms of the alimentary tract and its appendages gynecologic cancer genito-urinary cancer tumors of the head and neck bone and soft tissue sarcoma hematologic neoplasms lymphatic system acquired immune deficiency syndrome intracranial tumors in adults skin and skin appendages endocrine neoplasms cardiovascular neoplasms childhood cancer cancer of unknown primary complications of neoplasia and its treatment ethical and socio-economic issues. Appendices: current international staging system cancer chemotherapy - disease, drugs, dose, route, schedule, including combination index.
Behçet's Disease (1999)

BehÇet's disease is an inflammatory disorder of unknown cause, characterized by recurrent oral aphthous ulcers, genital ulcers, uveitis, and skin lesions.1,2 All these common manifestations are self-limiting except for the ocular attacks. Repeated attacks of uveitis can cause blindness.13 Behçet's disease is not a chronic, persistent inflammatory disease, but rather one consisting of recurrent attacks of acute inflammation. Involvement of the gastrointestinal tract, central nervous system, and large vessels is less frequent (Table 1), although it can be life-threatening.1,2,46 Susceptibility to Behçet's disease is strongly associated with the presence of the HLA-B51 allele.7,8 Environmental . . .
Positioning beacon system using digital camera and LEDs (2003)

This paper is on a novel use of lighting or signaling devices constructed by light-emitting diodes (LEDs) as a positioning beacon. The idea is that the surface of the LED lighting device is divided into regions and used to show different visual patterns that are not noticeable by the human eye due to the high-frequency switching of the LEDs. A digital camera is used as a receiver to capture a sequence of images of the LED positioning beacon transmitter. Image-processing algorithms are used to decode the location code that is encoded in the visual patterns transmitted by the LED device. This idea can be applied to any LED traffic lights or signaling devices on the road and turn them into parts of a positioning beacon system. Such a system made up of high-brightness visible LEDs can provide the function of open-space wireless broadcasting of the positioning signal. The LED signaling method, transmission protocol, camera frame rate, LED flash rate, together with an implemented system and the experimental results, are presented in this paper.
Flt3-ligand administration after radiation therapy prolongs survival in a murine model of metastatic lung cancer. (1999)

An ineffective tumor-specific immune response from inadequate/incompetent antigen presentation could contribute to the failure in tumor control and its dissemination. Dendritic cells (DCs) have been shown to present antigen from apoptotic cells. We hypothesized that Flt3-ligand (Flt3L) therapy, which expands DCs in vivo, in combination with local tumor radiotherapy (RT), should improve antigen presentation from dying, irradiated tumor cells. RT + Flt3L reduced pulmonary metastases in a murine model of Lewis lung carcinoma and significantly improved survival in C57Bl/6 mice with established footpad tumors. Mice treated with Flt3L alone showed delayed tumor growth but eventually succumbed to tumor progression. The combination therapy of RT + Flt3L failed to impact survival in immunodeficient athymic mice, implicating the role of T cells in prolonging survival. These results support an attractive strategy of sequential RT and immunotherapy with Flt3L to enhance tumor antigen presentation, which may produce therapeutic responses against disseminated cancer and improvement in survival.
CAG repeat expansion in the TATA box-binding protein gene causes autosomal dominant cerebellar ataxia (2001)

At least 13 loci responsible for autosomal dominant cerebellar ataxia (ADCA) have been identified. Spinocerebellar ataxia 1, 2, 3, 6 and 7 are caused by translated CAG repeat expansions. However, in France, >30% of ADCAs are not explained by the known genes. Recently, analysis of the TATA box-binding protein (TBP) gene, one of the transcription factors known to contain a CAG/CAA repeat, in patients with progressive cerebellar ataxia revealed one sporadic case with 63 repeats. We examined this gene in 162 index cases with ADCA. An expanded repeat with 46 repeat units was detected in a single index case from Belgium. In this family, two affected members and six unaffected, but at-risk, individuals carried expanded alleles. Interestingly, the expanded repeat was stable during transmission. The main clinical features in six patients were cerebellar ataxia, dementia and behavioural disturbances with onset in their fourth to sixth decade. The main neuropathological finding was severe neuronal loss and gliosis in the Purkinje cell layer. Immunohistochemical analysis showed neuronal intranuclear inclusions containing expanded polyglutamine, indicating that this disease shares several features with other polyglutamine diseases. This study demonstrates that CAG/CAA repeat expansion in the TBP gene causes ADCA with dementia and/or psychiatric manifestations.
Galectin-7 Expression Potentiates HER-2-Positive Phenotype in Breast Cancer (2016)

HER-2 positive tumors are among the most aggressive subtypes of breast cancer and are frequently associated with metastasis and poor outcome. As with other aggressive subtypes of breast cancer, these tumors are associated with abnormally high expression of galectin-7 (gal-7), which confers metastatic breast tumor cells with increased invasive behavior. Although previous studies in the rat model of breast tumorigenesis have shown that gal-7 is also increased in primary breast tumor, its contribution to the development of the primary breast tumors remains unclear. In the present work, we have used genetically-engineered gal-7-deficient mice to examine the role of gal-7 in the development of the mammary gland and of breast cancer. Using histological and immunohistological analysis of whole mammary glands at different stages of development, we detected no significant changes between normal and gal-7-deficient mice. To test the involvement of gal-7 in breast cancer, we next examined the effects of loss of gal-7 on mammary tumor development by crossing gal-7-deficient mice with the mammary tumor transgenic mouse strain FVB-Tg(MMTV-Erbb2)NK1Mul/J. Finally, assessment of mice survival and tumor volume showed a delay of mammary tumor growth in the absence of systemic gal-7. These data suggest that gal-7 could potentiate the phenotype of HER-2 positive primary breast cancer.