gebhart/patrepeval huggingface dataset:
Latent dirichlet allocation (2003)

We describe latent Dirichlet allocation (LDA), a generative probabilistic model for collections of discrete data such as text corpora. LDA is a three-level hierarchical Bayesian model, in which each item of a collection is modeled as a finite mixture over an underlying set of topics. Each topic is, in turn, modeled as an infinite mixture over an underlying set of topic probabilities. In the context of text modeling, the topic probabilities provide an explicit representation of a document. We present efficient approximate inference techniques based on variational methods and an EM algorithm for empirical Bayes parameter estimation. We report results in document modeling, text classification, and collaborative filtering, comparing to a mixture of unigrams model and the probabilistic LSI model.
High-speed Clock Distribution Architecture Employing PLL for 0.6pm CMOS SOG (1992)

This paper describes an adlvanced clock distribution architecture employing PLL (phaselocked-loop) for 0.6pm CMOS SOG (sea-of-gates). This PLL can be customized only by the metallization process according to a system frequency to suit to the stable condition of the PLL. The performance of this circuits has been examined by utilizing the 139KG CMOS SOG chip. The clock skew wilhin a chip was achieved less than 400ps under the 3000F/Fs distribution. And clock operation at 156MHz could be realized within +200ps jitter.
Validation-based insertional mutagenesis identifies lysine demethylase FBXL11 as a negative regulator of NFκB (2009)

We describe a highly efficient use of lentiviral validation-based insertional mutagenesis (VBIM) to generate large populations of mammalian cells in which a strong promoter is inserted into many different genomic loci, causing greatly increased expression of downstream sequences. Many different selections or screens can follow, to isolate dominant mutant clones with a desired phenotypic change. The inserted promoter can be excised or silenced at will, to prove that the insertion caused the mutation. Cloning DNA flanking the insertion site identifies the locus precisely. VBIM virus particles are pseudotyped with VSV G protein, allowing efficient infection of most mammalian cell types, including non-dividing cells, and features are included that give high yields of stable virus stocks. In several different selections, useful mutants have been obtained at frequencies of approximately 10(-6) or higher. We used the VBIM technique to isolate mutant human cells in which the F-box leucine-rich protein 11 (FBXL11), a histone H3K36 demethylase, is shown to be a negative regulator of NFkappaB. High levels of FBXL11 block the ability of NFkappaB to bind to DNA or activate gene expression, and siRNA-mediated reduction of FBXL11 expression has the opposite effects. The H212A mutation of FBXL11 abolishes both its histone H3K36 demethylase activity and its ability to inhibit NFkappaB. Thus, we have used a powerful tool for mutagenesis of mammalian cells to reveal an aspect of the complex regulation of NFkappaB-dependent signaling.
A neural theory of binocular rivalry. (1989)

When the two eyes view discrepant monocular stimuli, stable single vision gives way to alternating periods of monocular dominance; this is the well-known but little understood phenomenon of binocular rivalry. This article develops a neural theory of binocular rivalry that treats the phenomenon as the default outcome when binocular correspondence cannot be established. The theory posits the existence of monocular and binocular neurons arrayed within a functional processing module, with monocular neurons playing a crucial role in signaling the stimulus conditions instigating rivalry and generating inhibitory signals to implement suppression. Suppression is conceived as a local process happening in parallel over the entire cortical representation of the binocular visual field. The strength of inhibition causing suppression is related to the size of the pool of monocular neurons innervated by the suppressed eye, and the duration of a suppression phase is attributed to the strength of excitation generated by the suppressed stimulus. The theory is compared with three other contemporary theories of binocular rivalry. The article closes with a discussion of some of the unresolved problems related to the theory.
High‐resolution time‐resolved contrast‐enhanced MR abdominal and pulmonary angiography using a spiral‐TRICKS sequence (2007)

Both high spatial resolution and high temporal resolution are desirable for contrast-enhanced magnetic resonance angiography (CE-MRA) in order to depict the arterial vasculature. In this work a fast MR pulse sequence (spiral time-resolved imaging with contrast kinetics (Spiral-TRICKS)) with spiral readout in-plane and Cartesian slice encoding was developed whereby the slices are partitioned into multiple regions and acquired in the order used with the TRICKS sequence. The combination of highly efficient spiral sampling with TRICKS acquisition significantly reduced imaging time requirements. A unit second temporal reconstructed frame rate could be achieved for three-dimensional (3D) CE-MRA without undersampling of the spiral trajectories. Image quality was improved through spiral trajectory measurement and field-map correction. Phantom and volunteer studies were performed to demonstrate the feasibility of this technique.
Theme-Oriented Poetic Devices of Herbert's "Easter-Wings" (2000)

허버트의 불후의 명시인 “부활절 날개들”은 그의 사후인 1633년에 니콜라스 페라에 의해 편집되어 『사원』이라는 제목으로 출간된 시집의 “교회”장에 수록되어 있다. 허버트의 최고의 걸작중의 하나인 이 시는 다음과 같은 몇 가지 측면들, 즉 정교한 시어의 선택, 라임 패턴, 음절수, 미터, 이미저리, 시각적 패턴, 제목, 시제, 톤 등을 통해 그 우수성을 아주 잘 드러내고 있다. 본 논문에서는 다음과 같은 점을 조명하고 있다. 즉, 이 시에서 사용된 위와 같은 모든 시적 테크닉이나 장치들은 이 시의 주제인 “비상”과 매우 긴밀하게 연결되어 있으며, 또한 이 주제를 더 한층 효과적으로 전달해주는 역할을 하고 있다는 점을 집중적으로 분석하고 있다. 이 비상은 부패와 죽음을 상징하는 “하강”에 포함된 필요한 과정을 통한 부활과 구속을 의미한다. 이 시에서 보여주는 그 상징적인 의미 이외에도, 비상이라는 주제는 이 시에 측량할 수 없는 시적인 파워를 주고 있다. 지금까지 몇몇 학자들이 이 시의 형식에 대해 여러 가지 논의를 해왔지만, 그들은 이 시의 주제와의 연관선상에서 종합적인 접근을 하지 않고 있다. 이 글은 이 시의 형식과 내용이 어떻게 완벽한 조화를 이루고 있는 지를 여러 가지 측면에서 분석하고 있다. 이 시는 시의 안과 밖의 이상적인 조화를 보여주는 하나의 전형이라 할 수 있다. 이 시 안에서 그 형식과 내용이 완전하게 하나가 되고 있으며, 이것은 또한 하강과 상승의 과정이 궁극적으로 하나됨을 보여주는 것이기도 하다. 한 싸이클이 끝나는 바로 그 지점에서 또 다른 새로운 싸이클이 시작되는 것이다.
Localization of Rat Cathepsin K in Osteoclasts and Resorption Pits: Inhibition of Bone Resorption and Cathepsin K-Activity by Peptidyl Vinyl Sulfones (1999)

We have localized cathepsin K in rat osteoclasts and within exposed resorption pits by immuno-fluorescence microscopy. Intracellular staining using an antibody raised against recombinant mouse cathepsin K was vesicular and uniformly distributed throughout the cell. Confocal microscopy analysis did not reveal an accumulation of cathepsin K containing vesicles opposing the ruffled border and the resorption lacuna. Exposed resorption pits exhibited a uniform distribution of cathepsin K, and no differences were observed between the edges and the centers of the pits. The immunostaining of resorption pits with anti-cathepsin K antibodies demonstrates that the protease is secreted into the sub-osteoclastic compartment. Cathepsin K-specific inhibition using peptidyl vinyl sulfones as selective cysteine protease inactivators reduced bone resorption by 80% in a dose-dependent manner at sub-micromolar concentrations. No reduction of bone resorption was observed at those low concentrations using a potent cathepsin L, S, B-specific inhibitor. That the inhibition of bone resorption can be attributed to cathepsin K-like protease inhibition was corroborated by the selective inhibition of the osteoclastic Z-Gly-Pro-Arg-MbetaNA hydrolyzing activity by the cathepsin K, L, S, B-inhibitor, but not by the cathepsin L, B, and S inhibitor. Z-Gly-Pro-Arg-MbetaNA is efficiently hydrolyzed by cathepsin K but only poorly by cathepsins L, S, and B. On the contrary, the intracellular hydrolysis of the cathepsin B-specific substrate, Z-Arg-Arg-MbetaNA, was prevented by both types of inhibitors. The identification of cathepsin K in resorption pits and the inhibition of bone resorption and intracellular cathepsin K activity by selective vinyl sulfone inhibitors indicate the critical role of the protease in osteoclastic bone resorption.
Circulating Brain‐Enriched MicroRNAs for Detection and Discrimination of Idiopathic and Genetic Parkinson's Disease (2019)

The study provides a group of brain-enriched miRNAs that may be used for the detection and differentiation of PD subtypes. It has also identified the molecular pathways deregulated in PD. © 2019 International Parkinson and Movement Disorder Society.
New approaches in the diagnosis of sepsis. (2001)

In diagnosing sepsis the rapid identification of bacteremia at an early stage of the disease is critical for a favorable outcome. Furthermore, it is important that exact information on the stage of the disease be obtained rapidly in order to choose and initiate the appropriate therapy. In recent years many new techniques have been added to the diagnostic tools. In this review we will focus on three new methods for the early diagnosis of sepsis. These are: polymerase chain reaction, which offers the possibility to attain detailed information about the involved bacterial (or viral) species, and the laboratory markers procalcitonin and hypophosphatemia, which are indicators of the presence of infection with gram-negative bacteria. The approaches reviewed here were developed to expedite the diagnosis of especially early sepsis and might be a further step towards the improvement of therapy for sepsis.
Treatment of Primary Sjögren Syndrome With Rituximab (2014)

Rituximab did not alleviate symptoms or disease activity in patients with pSS at week 24, although it alleviated some symptoms at earlier time points.
A scaled particle theory of aqueous and nonaqueous solutions (1976)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTA scaled particle theory of aqueous and nonaqueous solutionsRobert A. PierottiCite this: Chem. Rev. 1976, 76, 6, 717–726Publication Date (Print):December 1, 1976Publication History Published online1 May 2002Published inissue 1 December 1976https://pubs.acs.org/doi/10.1021/cr60304a002https://doi.org/10.1021/cr60304a002research-articleACS PublicationsRequest reuse permissionsArticle Views2862Altmetric-Citations1145LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Lateral Diffusion of Membrane Proteins (2009)

We measured the lateral mobility of integral membrane proteins reconstituted in giant unilamellar vesicles (GUVs), using fluorescence correlation spectroscopy. Receptor, channel, and transporter proteins with 1-36 transmembrane segments (lateral radii ranging from 0.5 to 4 nm) and a alpha-helical peptide (radius of 0.5 nm) were fluorescently labeled and incorporated into GUVs. At low protein-to-lipid ratios (i.e., 10-100 proteins per microm(2) of membrane surface), the diffusion coefficient D displayed a weak dependence on the hydrodynamic radius (R) of the proteins [D scaled with ln(1/R)], consistent with the Saffman-Delbruck model. At higher protein-to lipid ratios (up to 3000 microm(-2)), the lateral diffusion coefficient of the molecules decreased linearly with increasing the protein concentration in the membrane. The implications of our findings for protein mobility in biological membranes (protein crowding of approximately 25,000 microm(-2)) and use of diffusion measurements for protein geometry (size, oligomerization) determinations are discussed.
How does the level of pulmonary venous isolation compare between pulsed field ablation and thermal energy ablation (radiofrequency, cryo, or laser)? (2021)

Catheter-based PVI with the pentaspline PFA catheter creates chronic PV antral isolation areas as encompassing as thermal energy ablation.
Neural stem cell heterogeneity demonstrated by molecular phenotyping of clonal neurospheres (2002)

Neural stem cells (NSCs) in vitro are able to generate clonal structures, "neurospheres," that exhibit intra-clonal neural cell-lineage diversity; i.e., they contain, in addition to NSCs, neuronal and glial progenitors in different states of differentiation. The present study focuses on a subset of neurospheres derived from fresh clinical specimens of human brain by using an in vitro system that relies on particular growth factors, serum, and anchorage withdrawal. Thirty individual and exemplary cDNA libraries from these neurosphere clones were clustered and rearranged within a panel after characterization of differentially expressed transcripts. The molecular phenotypes that were obtained indicate that clonogenic NSCs in our in vitro system are heterogeneous, with subsets reflecting distinct neural developmental commitments. This approach is useful for the sorting and expansion of NSCs and facilitates the discovery of genes involved in cell proliferation, communication, fate control, and differentiation.
Kariéra a zaměstnání učitele - učitelé absolventi a nesouvislé zaměstnání (2017)

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Photosynthetic eukaryotes unite: endosymbiosis connects the dots (2003)

The photosynthetic organelle of algae and plants (the plastid) traces its origin to a primary endosymbiotic event in which a previously non-photosynthetic protist engulfed and enslaved a cyanobacterium. This eukaryote then gave rise to the red, green and glaucophyte algae. However, many algal lineages, such as the chlorophyll c-containing chromists, have a more complicated evolutionary history involving a secondary endosymbiotic event, in which a protist engulfed an existing eukaryotic alga (in this case, a red alga). Chromists such as diatoms and kelps then rose to great importance in aquatic habitats. Another algal group, the dinoflagellates, has undergone tertiary (engulfment of a secondary plastid) and even quaternary endosymbioses. In this review, we examine algal diversity and show endosymbiosis to be a major force in algal evolution. This area of research has advanced rapidly and long-standing issues such as the chromalveolate hypothesis and the extent of endosymbiotic gene transfer have recently been clarified.
Strontium‐substituted apatite coating grown on Ti6Al4V substrate through biomimetic synthesis (2007)

During the last few years Strontium has been shown to have beneficial effects when incorporated at certain doses in bone by stimulating bone formation. It is believed that its presence locally at the interface between an implant and bone will enhance osteointegration and therefore, ensure the longevity of a joint prosthesis. In this study we explore the possibility of incorporating Sr into nano-apatite coatings prepared by a solution-derived process according to an established biomimetic methodology for coating titanium based implants. The way this element is incorporated in the apatite structure and its effects on the stereochemistry and morphology of the resulting apatite layers was investigated, as well as its effect in the mineralization kinetics. By using the present methodology it was possible to incorporate increasing amounts of Sr in the apatite layers. Sr was found to incorporate in the apatite layer through a substitution mechanism by replacing Ca in the apatite lattice. The presence of Sr in solution induced an inhibitory effect on mineralization, leading to a decrease in the thickness of the mineral layers. The obtained Sr-substituted biomimetic coatings presented a bone-like structure similar to the one found in the human bone and therefore, are expected to enhance bone formation and osteointegration.
A Genetic Tool Used to Identify Thioredoxin as a Mediator of a Growth Inhibitory Signal (1991)

Loss of sensitivity to growth inhibitory polypeptides is likely to be one of the events that participates in the formation of some tumors and might be caused by inactivation or loss of the genetic elements that transduce these extracellular signals. The isolation of such a gene was achieved by randomly inactivating genes by an anti-sense complementary DNA expression library followed by direct selection for growth in the presence of an inhibitory polypeptide. Thus, a gene whose inactivation conveyed growth resistance to interferon-gamma (IFN-gamma) was isolated. Sequence analysis showed complete identity with human thioredoxin, a dithiol reducing agent, implicated here in the IFN-gamma-mediated growth arrest of HeLa cells.
Enzymic recognition of the base pair between isocytidine and isoguanosine (1993)

The ability of various polymerases to catalyze the template-directed formation of a base pair between isoguanine (iso-G) and isocytosine (iso-C) in duplex oligonucleotides has been investigated. A new procedure was developed for preparing derivatives of deoxyisoguanosine suitable for incorporation into DNA using an automated DNA synthesizer. T7 RNA polymerase, AMV reverse transcriptase, and the Klenow fragment of DNA polymerase all incorporated iso-G opposite iso-C in a template. T4 DNA polymerase did not. Several polymerases also incorporated iso-G opposite T, presumably through pairing with a minor tautomeric form of iso-G complementary to T. In a template, iso-G directs the incorporation of both iso-C and T when Klenow fragment is the catalyst and only U when T7 RNA polymerase is the catalyst. Further, derivatives of iso-C were found to undergo significant amounts of deamination under alkaline conditions used for base deprotection after automated oligonucleotide synthesis. Both the deamination reaction of iso-C and the ambivalent tautomeric forms of iso-G make it unlikely that the (iso-C).(iso-G) base pair was a part of information storage molecules also containing the A.T and G.C base pairs found in primitive forms of life that emerged on planet earth several billion years ago. Nevertheless, the extra letters in the genetic alphabet can serve useful roles in a contemporary laboratory setting.
Gold-Catalyzed Direct Arylation (2012)

Biaryls (two directly connected aromatic rings, Ar(1)-Ar(2)) are common motifs in pharmaceuticals, agrochemicals, and organic materials. Current methods for establishing the Ar(1)-Ar(2) bond are dominated by the cross-coupling of aryl halides (Ar(1)-X) with aryl metallics (Ar(2)-M). We report that, in the presence of 1 to 2 mole percent of a gold catalyst and a mild oxidant, a wide range of arenes (Ar(1)-H) undergo site-selective arylation by arylsilanes (Ar(2)-SiMe(3)) to generate biaryls (Ar(1)-Ar(2)), with little or no homocoupling (Ar(1)-Ar(1)/Ar(2)-Ar(2)). Catalysis proceeds at room temperature and tolerates a broad range of functional groups, including those incompatible with cross-coupling. These features expedite biaryl preparation, as demonstrated by synthesis of the nonsteroidal anti-inflammatory diflunisal.
Treatment of Diversion Colitis with Short-Chain-Fatty Acid Irrigation (1989)

A condition known as diversion colitis frequently develops in segments of the colorectum after surgical diversion of the fecal stream; it persists indefinitely unless the excluded segment is reanastomosed. The disease is characterized by bleeding from inflamed colonic mucosa that mimics the bleeding of idiopathic inflammatory bowel disease, and it may culminate in stricture formation. We hypothesized that this condition is caused by the absence of luminal short-chain fatty acids, the preferred metabolic substrates of colonic epithelium. We studied four patients with diversion colitis, none of whom had evidence of Crohn's, idiopathic ulcerative, or infectious colitis. The excluded segment of the rectosigmoid contained negligible concentrations of short-chain fatty acids. When D-glucose was instilled, it did not undergo appreciable anaerobic fermentation. Instillation of a solution containing short-chain fatty acids twice daily resulted in the disappearance of symptoms and the inflammatory changes observed at endoscopy, over a period of four to six weeks. Remission has been maintained for up to 14 months (in one patient) by instillation daily to twice weekly. Administering enemas containing isotonic saline, or omitting treatment for periods of two to four weeks during the regimen, by contrast, did not produce any improvement or rapid relapse of the colitis. Histologic observation revealed a distinctive type of mucosal inflammation that resolved more slowly and less completely than the gross appearance of the inflamed mucosa. From these preliminary studies we infer that diversion colitis may represent an inflammatory state resulting from a nutritional deficiency in the lumen of the colonic epithelium, which is effectively treated by local application of short-chain fatty acids, the missing nutrients.
INSIGHTS (2003)

RETURN TO ISSUEPREVNewsNEXTINSIGHTSA QUESTION OF SIZE FOR SPECIALTIES'Bigger is better' theory may be falling apart for specialty chemicals companiesPATRICIA L. SHORTCite this: Chem. Eng. News 2003, 81, 18, 27Publication Date (Print):May 5, 2003Publication History Published online13 November 2010Published inissue 5 May 2003https://pubs.acs.org/doi/10.1021/cen-v081n018.p027https://doi.org/10.1021/cen-v081n018.p027newsACS PublicationsCopyright © 2003 AMERICAN CHEMICAL SOCIETYArticle Views9Altmetric-Citations-LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access options SUBJECTS:Lipids,Manufacturing,Power Get e-Alerts