gebhart/patrepeval huggingface dataset:
Low driving voltage holographic polymer dispersed liquid crystals with chemically incorporated graphene oxide (2011)

A minute amount of allyl isocynate functionalized graphene oxide (MGO, 0.05–0.25%) has been covalently incorporated into the polyurethane acrylate based matrix of holographic polymer dispersed liquid crystals (HPDLC), and the effects were studied in terms of compound viscosity, grating kinetics and morphology, diffraction efficiency (DE), and electro-optical properties of the HPDLC films at two levels of laser writing power. MGO at very low content (0.05%, 0.10%) significantly reduced the compound viscosity, increased the polymerization rate, limited droplet coalescence, and increased the diffraction efficiencies (74%, 64%) over the MGO-free compound (48%). Polymer conductivity and local electrical field increased with increasing MGO content to give a large decrease in operating voltage in accordance with a theoretical prediction. With high laser intensity, well defined grating structure with small droplet size was seen from the SEM morphology to give a fast grating formation with high saturation diffraction.
IFNα kinoid vaccine-induced neutralizing antibodies prevent clinical manifestations in a lupus flare murine model (2009)

A major involvement of IFNalpha in the etiopathogenesis of systemic lupus erythematosus has been suggested by clinical observations, including the increase of serum levels of this cytokine in patients with active disease. Supporting this hypothesis, we have shown that expression of IFNalpha from a recombinant adenovirus (IFNalpha Adv) precipitates lupus manifestations in genetically susceptible New Zealand Black (NZB) x New Zealand White (NZW)F(1) mice (NZB/W) but not in BALB/c mice. In the present investigation, we have prepared an IFNalpha immunogen, termed IFNalpha kinoid, which, appropriately adjuvanted, induces transient neutralizing antibodies (Abs) but no cellular immune response to the cytokine and without apparent side effects. Using this preparation, we also showed that, in kinoid-vaccinated NZB/W mice, lupus manifestations, including proteinuria, histological renal lesions, and death triggered by IFNalpha Adv challenge were delayed/prevented as long as an effective threshold of anti-IFNalpha inhibitory capacity was present in the serum.
Concept and progress in the development of RGD‐containing peptide pharmaceuticals (1995)

The cell adhesion domain, arginine-glycine-aspartic acid (RGD), has been incorporated into synthetic peptides to perform either of two modes of drug action, antagonist or agonist. Short, conformationally constrained peptides have been developed as antagonists for the platelet membrane glycoprotein complex, the integrin alpha IIb beta 3, using cell-based and integrin-based assays. In combination with a comparative molecular modeling study, these results have helped identify common conformational elements in the pharmacophore of this class of molecules. Peptides are presented that are highly potent, integrin specific, and that possess reduced pharmacological side effects. Also presented is the development of a peptide that modifies, noncovalently, the surfaces of a wide variety of synthetic materials used in medical implants. The agonist activity of [corrected] this molecule is evident from its ability to stimulate cell attachment on these surfaces. This is shown to translate into an in vivo activity of faster and more complete tissue integration, and a reduction in foreign body response.
The Hepatotoxicity of Valproic Acid and Its Metabolites in Rats. I. Toxicologic, Biochemical and Histopathologic Studies (1984)

Valproic acid (VPA), its unsaturated metabolites and pent-4-enoate (4-PA) were studied for potential hepatotoxicity in rats. 4-PA, 4-en-VPA and 2,4-dien-VPA were potent inducers of microvesicular steatosis in young rats. Microvesicular steatosis induced by the 4-en-VPA was accompanied by ultrastructural changes characterized by myeloid bodies, lipid vacuoles and mitochondrial abnormalities. Myeloid bodies and lipid vacuoles were seen to a lesser extent in 2,4-dien-VPA and 4-PA-treated rats. VPA failed to induce discernible liver lesions in young rats even at near lethal doses of 700 mg per kg per day. The drug did, however, induce hepatic lipid accumulation in mature rats and in young rats dosed concomitantly with phenobarbital. beta-oxidation inhibition and several other biochemical alterations were observed in rats dosed with VPA, its unsaturated metabolites and 4-PA. It was suggested that beta-oxidation inhibition observed in both VPA and en-metabolite-treated rats occurred by different mechanisms. VPA inhibits by a transient sequestering of CoA while the CoA esters of some en-VPA-metabolites, particularly 4-en-VPA, inhibit specific enzyme(s) in the beta-oxidation sequences.
1.55-μm InGaAsP distributed feedback vapor phase transported buried heterostructure lasers (1985)

1.55-μm single longitudinal mode InGaAsP distributed feedback (DFB) lasers have been fabricated using a vapor phase transported (VPT) buried heterostructure geometry on a liquid phase epitaxially grown broad area DFB base. Lasing thresholds in the 35–65-mA range were obtained, with side mode suppression ratios as high as 39 dB under modulation. The VPT DFB laser has both a good high-speed modulation capability and low wavelength chirping under high-speed modulation, making it an attractive candidate for high bit rate, long-haul optical fiber systems applications, with demonstrated record system performance at both 2 and 4 Gbit/s.
Debranching enzymes of potato tubers (Solanum tuberosum L.). I. Purification and some properties of potato isoamylase. (1983)

Potato tubers contain 3 debranching enzymes separable by polyacrylamide gel electrophoresis. One of them, isoamylase, has been purified to apparent homogeneity on disc gel electrophoresis by isoelectric precipitation, fractionation with ammonium sulfate, gel filtration on Sepharose 6B and finally affinity chromatography on Sepharose 4B-soluble starch, successively. The purified enzyme has a specific activity of 8.0U/mg of protein. It hydrolyzes the α-1, 6-glucosidic bonds in glycogen and phytoglycogen not only as rapidly as those in amylopectin but also completely, but cannot hydrolyze pullulan. From these results potato isoamylase was found to have the same substrate specificity as that of Pseudomonas isoamylase. However, different from the latter, it has an optimum pH of 5.5-6.0, optimum temperature of 50°C and was reversibly inactivated by p-chloromercuri-benzoate.
AGEING AND PARKINSON'S DISEASE: SUBSTANTIA NIGRA REGIONAL SELECTIVITY (1991)

The micro-architecture of the substantia nigra was studied in control cases of varying age and patients with parkinsonism. A single 7 mu section stained with haematoxylin and eosin was examined at a specific level within the caudal nigra using strict criteria. The pars compacta was divided into a ventral and a dorsal tier, and each tier was further subdivided into 3 regions. In 36 control cases there was a linear fallout of pigmented neurons with advancing age in the pars compacta of the caudal substantia nigra at a rate of 4.7% per decade. Regionally, the lateral ventral tier was relatively spared (2.1% loss per decade) compared with the medial ventral tier (5.4%) and the dorsal tier (6.9%). In 20 Parkinson's disease (PD) cases of varying disease duration there was an exponential loss of pigmented neurons with a 45% loss in the first decade. Regionally, the pattern was opposite to ageing. Loss was greatest in the lateral ventral tier (average loss 91%) followed by the medial ventral tier (71%) and the dorsal tier (56%). The presymptomatic phase of PD from the onset of neuronal loss was estimated to be about 5 yrs. This phase is represented by incidental Lewy body cases: individuals who die without clinical signs of PD or dementia, but who are found to have Lewy bodies at post-mortem. In 7 cases cell loss was confined to the lateral ventral tier (average loss 52%) congruent with the lateral ventral selectivity of symptomatic PD. It was calculated that at the onset of symptoms there was a 68% cell loss in the lateral ventral tier and a 48% loss in the caudal nigra as a whole. The regional selectivity of PD is relatively specific. In 15 cases of striatonigral degeneration the distribution of cell loss was similar, but the loss in the dorsal tier was greater than PD by 21%. In 14 cases of Steele-Richardson-Olszewski syndrome (SRO) there was no predilection for the lateral ventral tier, but a tendency to involve the medial nigra and spare the lateral. These findings suggest that age-related attrition of pigmented nigral cells is not an important factor in the pathogenesis of PD.
Partially Supervised classification of remote sensing images through SVM-based probability density estimation (2005)

A general problem of supervised remotely sensed image classification assumes prior knowledge to be available for all the thematic classes that are present in the considered dataset. However, the ground-truth map representing that prior knowledge usually does not really describe all the land-cover typologies in the image, and the generation of a complete training set often represents a time-consuming, difficult and expensive task. This problem affects the performances of supervised classifiers, which erroneously assign each sample drawn from an unknown class to one of the known classes. In the present paper, a classification strategy is described that allows the identification of samples drawn from unknown classes through the application of a suitable Bayesian decision rule. The proposed approach is based on support vector machines (SVMs) for the estimation of probability density functions and on a recursive procedure to generate prior probability estimates for known and unknown classes. In the experiments, both a synthetic dataset and two real datasets were used.
C/EBPα and DEK coordinately regulate myeloid differentiation (2012)

The transcription factor C/EBPα is a critical mediator of myeloid differentiation and is often functionally impaired in acute myeloid leukemia. Recent studies have suggested that oncogenic FLT3 activity disrupts wild-type C/EBPα function via phosphorylation on serine 21 (S21). Despite the apparent role of pS21 as a negative regulator of C/EBPα transcription activity, the mechanism by which phosphorylation tips the balance between transcriptionally competent and inhibited forms remains unresolved. In the present study, we used immuno-affinity purification combined with quantitative mass spectrometry to delineate the proteins associated with C/EBPα on chromatin. We identified DEK, a protein with genetic links to leukemia, as a member of the C/EBPα complexes, and demonstrate that this association is disrupted by S21 phosphorylation. We confirmed that DEK is recruited specifically to chromatin with C/EBPα to enhance GCSFR3 promoter activation. In addition, we demonstrated that genetic depletion of DEK reduces the ability of C/EBPα to drive the expression of granulocytic target genes in vitro and disrupts G-CSF-mediated granulocytic differentiation of fresh human BM-derived CD34(+) cells. Our data suggest that C/EBPα and DEK coordinately activate myeloid gene expression and that S21 phosphorylation on wild-type C/EBPα mediates protein interactions that regulate the differentiation capacity of hematopoietic progenitors.
Calcium‐permeable α‐amino‐3‐hydroxy‐5‐methyl‐4‐isoxazole propionic acid receptors: A molecular determinant of selective vulnerability in amyotrophic lateral sclerosis (1997)

The cause of the selective degeneration of motor neurons in amyotrophic lateral sclerosis (ALS) remains unexplained. One potential pathogenetic mechanism is chronic toxicity due to disturbances of the glutamatergic neurotransmitter system, mediated via alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid (AMPA)-sensitive glutamate receptors. Functional AMPA receptors consist of various combinations of four subunits (designated GluR1-4). The GluR2 subunit is functionally dominant and renders AMPA receptors impermeable to calcium. Most native AMPA receptors in the mammalian central nervous system (CNS) contain the GluR2 subunit and are calcium impermeable. We have investigated the composition of AMPA receptors expressed on normal human spinal motor neurons by in situ hybridization to determine their likely subunit stoichiometry. Highly significant levels of mRNA were detected for the GluR1, GluR3, and GluR4 subunits. However, GluR2 subunit mRNA was not detectable in this cell group. The absence of detectable GluR2 mRNA in normal human spinal motor neurons predicts that they express calcium-permeable AMPA receptors unlike most neuronal groups in the human CNS. Expression of atypical calcium-permeable AMPA receptors by human motor neurons provides a possible mechanism whereby disturbances of glutamate neurotransmission in ALS may selectively injure this cell group.
Integrin-mediated Activation of MEK and Mitogen-activated Protein Kinase Is Independent of Ras (1996)

The integrins are a family of cell surface receptors that mediate adhesive interactions with the extracellular matrix and also generate signals that influence cell growth and differentiation. Ligation and clustering of integrins causes activation and autophosphorylation of focal adhesion kinase (FAK), a cytoplasmic tyrosine kinase, and results in the transient activation of p42 and p44 mitogen-activated protein (MAP) kinases. Initial evidence has suggested that the integrin signaling pathway may share common elements with the canonical Ras signal transduction cascade activated by peptide mitogens such as epidermal growth factor (EGF). In this report we demonstrate that Raf-1 and MAP or extracellular signal-related kinase kinase (MEK), key cytoplasmic kinases of the Ras cascade, are activated subsequent to integrin-mediated adhesion of mouse NIH 3T3 fibroblasts. We also show that MAP kinase is downstream of MEK in the integrin signaling pathway. However, in contrast to the receptor tyrosine kinase signaling cascade, integrin-mediated signal transduction seems to be largely independent of Ras. Dominant negative inhibitors of Ras-dependent signaling failed to block integrin-mediated activation of MEK. In addition, while treatment with the peptide mitogen EGF clearly increased GTP-loading of Ras, little effect was observed in response to integrin-dependent cell adhesion. Thus, integrin-mediated activation of MEK and MAP kinase in 3T3 cells occurs primarily by a mechanism that is distinct from the Ras signal transduction cascade.
Simultaneous measurements of particle backscattering and extinction coefficients and wind velocity by lidar with a Mach–Zehnder interferometer: principle of operation and performance assessment (2003)

The development of remote-sensing instruments that can be used to monitor several parameters at the same time is important for the study of complex processes such as those that control climate and environment. In this paper the performance of a new concept of lidar receiver that allows for the direct measurement of aerosol and cloud optical properties simultaneously with wind velocity is investigated. This receiver uses a Mach-Zehnder interferometer. Two different configurations, either with four photometric output channels or with fringe imaging on a multichannel detector, are studied. Analytical expressions of the statistical errors are given under the assumption of Gaussian signal spectra. It is shown that similar accuracies can be achieved for both configurations. Performance modeling of the retrieval of semitransparent cloud optical scattering properties and wind velocity was done at different operation wavelengths for a Nd:YAG laser source. Results for such a lidar system onboard an aircraft flying at an altitude of 12 km show that for semitransparent clouds the best results were obtained at 355 nm, with relative standard deviations of 0.5% and 5% for the backscatter and extinction coefficients, respectively, together with a velocity accuracy of 0.2 ms(-1). The accuracy of optical properties retrieved for boundary layer aerosols are comparable, whereas the velocity accuracy is decreased to 1 ms(-1). Finally, an extrapolation to a large 355-nm spaceborne lidar shows accuracies in the range from 2.5% to 5% for the backscatter coefficient and from 10% to 15% for the extinction coefficient together with a vertical wind speed accuracy of better than 0.5 ms(-1) for semitransparent clouds and boundary layer, with a vertical resolution of 500 m and a 100 shot averaging.
Highly Specific Detection of Myostatin Prodomain by an Immunoradiometric Sandwich Assay in Serum of Healthy Individuals and Patients (2013)

We established a highly specific IRMA for the quantification of myostatin prodomain concentration in human serum. Our assay could be useful to study myostatin as a biomarker for example in patients with chronic pulmonary disease, as we detected highly elevated myostatin prodomain serum levels in underweight individuals of this group.
Resection Margin Status in Radical Retropubic Prostatectomy Specimens: Relationship to Type of Operation, Tumor Size, Tumor Grade and Local Tumor Extension (1990)

Since the introduction of the nerve-sparing radical retropubic prostatectomy, there has been a steady increase in the number of prostatic cancer cases treated operatively and concern with the frequency of positive resection margins has developed. To identify factors that determine resection margin status the hospital charts of 199 radical retropubic prostatectomy patients from 1980 to 1987 were reviewed, as well as slides from 52 patients in 1987. Of the 199 patients 92 (46%) had positive resection margins; there was no difference in the frequency between the nerve-sparing and standard procedures. The 1987 slide review showed a positive resection margin frequency of 58%. The presence and extent of positive resection margins were directly related to tumor size. The positive resection margin frequency also increased with poorly differentiated carcinoma, capsular penetration and seminal vesicle involvement. Determination of these risk factors identifies patients at greatest risk for positive resection margins.
High temperature superconducting 8.45-GHz bandpass filter for the Deep Space Network (2002)

A high-temperature superconducting (HTS) stripline 8.45-GHz bandpass filter, designed for the Deep Space Network, is presented. It has very low insertion loss, indicative of resonators with unloaded Q's greater than 10000. The performance of this filter shows that practical, high-Q multiresonator devices can be constructed using lanthanum aluminate substrates in a stripline configuration. The HTS films used in this filter were of the thallium barium calcium copper oxide (TBCCO) variety, deposited on a lanthanum aluminate substrate using laser ablation and postdeposition thermal processing. The HTS surface resistance of these TBCCO films is less than 0.5 m Omega at 10 GHz and facilitates the construction of planar HTS resonators with unloaded Q's greater than 10000 at 10 GHz. HTS planar circuits with these Q's are very useful in constructing narrow-bandwidth filters due to the resulting very low minimum insertion loss.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Identification of Lymphoma-Associated Antigens Using SEREX (2005)

Serological analysis of recombinant complementary deoxyribonucleic acid (cDNA) expression libraries (SEREX) is a powerful approach to identify immunogenic cancer-associated proteins using antibodies that are naturally present in the serum of cancer patients. This technique involves the screening of a relevant cDNA expression library with patient serum that has been cleaned to remove any antibodies that may recognize bacterial and/or viral proteins. Once antigens have been identified and their reactivity has been confirmed with a second round of screening, the gene encoding the protein can be sequenced and identified. Antigens can then be screened with a panel of allogenic sera from other patients and control individuals. This identifies disease-specific antigens, which may be useful diagnostic markers or, alternatively, targets for immunotherapy. This chapter describes the SEREX methodology in full.
A distributed OLAP infrastructure for e-commerce (1999)

Warehousing and mining sales transaction data to generate summary information, customer profiles, and business rules has become increasingly important in e-commerce. Such summary information and rules have to be extracted from very large collections of transaction data gathered at many distributed sites. This is challenging data mining, both in terms of the magnitude of data involved, and the need to incrementally adapt the mined patterns and rules as new data is collected. This paper describes a distributed and cooperative data warehousing, OLAP, and data mining infrastructure that addresses these challenges. Our contributions are as follows. First, we define various new classes of multidimensional and multi-level association rules (scoped multidimensional, with conjoint items, and functional) that can be extracted from customer profiles and are used for e-commerce applications. Then, we show how customer profiles and different classes of association rules can be computed in a distributed, cooperative manner using OLAP tools. Finally, we show how the summaries, profiles, and rules can be incrementally updated as new transaction data is collected. This infrastructure has been prototyped at HP Labs.
Regional variation in histopathologic features of tumor specimens from treatment-naive glioblastoma correlates with anatomic and physiologic MR Imaging (2012)

Histopathologic evaluation of glioblastoma multiforme (GBM) at initial diagnosis is typically performed on tissue obtained from regions of contrast enhancement (CE) as depicted on gadolinium-enhanced, T1-weighted images. The non-enhancing (NE) portion of the lesion, which contains both reactive edema and infiltrative tumor, is only partially removed due to concerns about damaging functioning brain. The purpose of this study was to evaluate histopathologic and physiologic MRI features of image-guided tissue specimens from CE and NE regions to investigate correlations between imaging and histopathologic parameters. One hundred nineteen tissue specimens (93 CE and 26 NE regions) were acquired from 51 patients with newly diagnosed GBM by utilizing stereotactic image-guided sampling. Variables of anatomic, diffusion-weighted imaging (DWI), and dynamic susceptibility-weighted, contrast-enhanced perfusion imaging (DSC) from each tissue sample location were obtained and compared with histopathologic features such as tumor score, cell density, proliferation, architectural disruption, hypoxia, and microvascular hyperplasia. Tissue samples from CE regions had increased tumor score, cellular density, proliferation, and architectural disruption compared with NE regions. DSC variables such as relative cerebral blood volume, peak height, and recovery factor were significantly higher, and the percentage of signal intensity recovery was significantly lower in the CE compared with the NE regions. DWI variables were correlated with histopathologic features of GBM within NE regions. Image-guided tissue acquisition and assessment of residual tumor from treatment-naive GBM should be guided by DSC in CE regions and by DWI in NE regions.
Formation of internucleotide 3′-5′ phosphoramidate links by direct coupling of phosphoryl and amino groups (1975)

The stepwise synthesis of oligomers derived from 5'-amino-5'-deoxythymidine 3'-phosphate and 5'-amino-5'-deoxy-3'-O-mono-p-methoxytrityl-thymidine is described. The internucleotide phosphoramidate links were formed by condensation of nucleoside 3'-phosphates with aminonucleosides by means of triphenylphosphine and dipridyl disulfide.