gebhart/patrepeval huggingface dataset:
Cyclin D1 protein analysis in the diagnosis of mantle cell lymphoma (1995)

Mantle cell lymphoma (MCL) is a clinicopathologic entity that is difficult to diagnose on histopathologic criteria. Approximately 50% to 70% of MCL contain a t(11;14)(q13;q32) translocation involving the cyclin D1 gene. Irrespective of this rearrangement, almost all MCL show overexpression of the cyclin D1 gene at the mRNA level. Other B-cell non-Hodgkin's lymphomas (NHL) do not show this rearrangement or overexpression of cyclin D1. We developed an immunohistochemical assay to detect overexpression of the cyclin D1 protein on conventional formalin-fixed, paraffin-embedded biopsies using the well-defined monoclonal antibody DCS-6. Expression in tumor cells was compared with expression of cyclin D1 in endothelial cells and fibroblasts. An exclusively nuclear staining pattern was observed. Moreover, expression was directly compared with the expression observed by immunoblot analysis with the same antibody, as well as with mRNA expression and with the occurrence of genomic rearrangements within the BCL-1 locus. Of 13 MCL that were analyzed by immunohistochemistry and immunoblot, 12 showed overexpression with both techniques, whereas no overexpression was observed in 39 other NHL. Of 13 additional MCL studied either by immunohistochemistry or immunoblot, 11 also showed overexpression. Two lymphomas morphologically indistinguishable from MCL but with an aberrant immunophenotype (CD5 negative, CD10 positive) both lacked overexpression of cyclin D1. These results underscore the significance of overexpression of the cyclin D1 protein as a specific marker for MCL. Detection of cyclin D1 overexpression on formalin-fixed, paraffin-embedded tissues using the DCS-6 monoclonal antibody can be applied for routine diagnostic purposes.
Pixel processing in a memory controller (1995)

The SX-a programmable pixel processor implemented in a workstation memory controller chip-aims to perform as well as low-end 2D and 3D graphics processors and to surpass low-end imaging accelerators. The following features help accomplish this goal: large internal register set; vectorized RISC-like instruction set; fast access to both main and video memory; fast pixel operations; free operations; unpolluted cache; and single-chip solution. We describe the workstation configuration we used for our tests and the SX processor architecture, followed by the SX instruction set and sample algorithms. Then we present SX performance results for a wide range of operations.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Human sweat and 2‐oxopentanoic acid elicit a landing response from Anopheles gambiae (2000)

A wind tunnel bioassay and video to observe mosquitoes landing on heated glass cylinders were used to test sweat and some derivatives for responses of Anopheles gambiae Giles (Diptera: Culicidae), a highly anthropophilic African species of malaria vector. Filter papers impregnated with human sweat and a diethyl ether extract from the filter papers elicited significantly more landings than a water control (P<0.001). The concentration of lactic acid in the extract was determined by GLC assay, but bioassays of an equivalent dose of lactic acid (from a commercial supplier) did not elicit landings. Chemical analysis of the extract by combined GLC/mass spectrometry indicated the presence of 73 compounds, of which 40 were tentatively identified. The major components of the extract were aliphatic carboxylic acids. An artificial blend of 22 carboxylic acids did not elicit landings. Bioassays of 2-oxopentanoic acid elicited significantly more, landings (P<0.001). The possible importance of oxo-carboxylic acids for host-seeking by anthropophilic mosquitoes is discussed and their use for trapping is suggested.
Characterization of Interleukin-10 Receptor Expression on B-Cell Chronic Lymphocytic Leukemia Cells (1997)

B-cell chronic lymphocytic leukemia (B-CLL) cells accumulate in vivo in the G0/G1 phase of the cell cycle, suggesting that their malignant expansion is due, at least in part, to a delay in cell death. However, the cellular or molecular factors responsible for a delay in B-CLL cell death are unknown. B-CLL cells do express receptors for interferon-alpha (IFN-alpha) and IFN-gamma, and activation of both has been shown to promote B-CLL survival in vitro by preventing apoptosis. The interleukin-10 (IL-10) receptor is another member of the IFN receptor family, but its ligand, IL-10, has been reported to induce apoptosis in B-CLL cells. In the current study, we undertook a biochemical analysis of IL-10 receptor expression on freshly isolated B-CLL cells and characterized the functional responsiveness of IL-10 binding to its constitutively expressed receptor. We show that B-CLL cells bind IL-10 with significant specificity and express between 47 and 127 IL-10 receptor sites per cell, with a dissociation constant in the range of 168 to 426 x 10(-12) mol/L. Ligand binding and activation of the IL-10 receptor expressed on B-CLL cells results in the phosphorylation of signal transducer and activator of transcription 1 (STAT1) and STAT3 proteins. This pattern of STAT protein phosphorylation is identical to IL-10 receptor activation on normal cells and similar to IFN-alpha (STAT1 and STAT3) and IFN-gamma (STAT1) receptor activation in CLL. Further, in consecutive samples of fresh blood obtained from patients with B-CLL cells, the addition of IL-10 inhibited B-CLL proliferation, enhanced B-CLL differentiation, but did not induce apoptosis. Indeed, IL-10, like IFN-gamma, was able to significantly reduce the amount of B-CLL cell death caused by hydrocortisone-induced apoptosis. We conclude that cytokines, which signal through the interferon family of receptors, have comparable functional effects on B-CLL cells.
History of Optimal Power Flow and Formulations Optimal Power Flow Paper 1 (2012)

The purpose of this paper is to present a literature review of the AC Optimal Power Flow (ACOPF) problem and propose areas where the ACOPF could be improved. The ACOPF is at the heart of Independent System Operator (ISO) power markets, and is solved in some form every year for system planning, every day for day‐ahead markets, every hour, and even every 5 minutes. It was first formulated in 1962, and formulations have changed little over the years. With advances in computing power and solution algorithms, we can model more of the constraints and remove unnecessary limits and approximations that were previously required to find a solution in reasonable time. One example is nonlinear voltage magnitude constraints that are modeled as linear thermal proxy constraints. In this paper, we refer to the full ACOPF as an ACOPF that simultaneously optimizes real and reactive power. Today, 50 years after the problem was formulated, we still do not have a fast, robust solution technique for the full ACOPF. Finding a good solution technique for the full ACOPF could potentially save tens of billions of dollars annually. Based on our literature review, we find that the ACOPF research community lacks a common
Coordinated induction of multi-gene pathways in Saccharomyces cerevisiae (2012)

Bacterial operons are nature's tool for regulating and coordinating multi-gene expression in prokaryotes. They are also a gene architecture commonly used in the biosynthesis of many pharmaceutically important compounds and industrially useful chemicals. Despite being an important eukaryotic production host, Saccharomyces cerevisiae has never had such gene architecture. Here, we report the development of a system to assemble and regulate a multi-gene pathway in S. cerevisiae. Full pathways can be constructed using pre-made parts from a plasmid toolbox. Subsequently, through the use of a yeast strain containing a stably integrated gene switch, the assembled pathway can be regulated using a readily available and inexpensive compound-estradiol-with extremely high sensitivity (10 nM). To demonstrate the use of the system, we assembled the five-gene zeaxanthin biosynthetic pathway in a single step and showed the ligand-dependent coordinated expression of all five genes as well as the tightly regulated production of zeaxanthin. Compared with a previously reported constitutive zeaxanthin pathway, our inducible pathway was shown to have 50-fold higher production level.
A study of damaged hair (1976)

Synopsis--A SCANNING ELECTRON MICROSCOPE study of the morphological changes in human HAIR has revealed that these changes may be entirely attributable to the ABRASION normally associated with hair grooming. In particular, SHAMPOOING and BRUSHING can produce all of the observed changes detected in virgin hair. These changes are more deleterious in some cosmetically altered hairs. This appears to be attributable to a decrease in the disulphide bond content of these fibres, this decrease being brought about by the cosmetic treatment.
Thrombomodulin gene regulation by cAMP and retinoic acid in F9 embryonal carcinoma cells. (1992)

Thrombomodulin (TM) expression was investigated during differentiation of F9 embryonal carcinoma cells into primitive or parietal endoderm. Exposure of F9 cells to retinoic acid (RA) triggers differentiation into primitive endoderm and induces the appearance of barely detectable amounts of TM mRNA, whereas treatment with dibutyryl cAMP plus theophylline (CT) augments the levels of TM mRNA to a 4-fold greater extent than RA. Exposure of F9 cells to RA plus CT initiates differentiation into parietal endoderm and synergistically increases the levels of TM mRNA by 10- to 12-fold compared with CT. The time-dependent establishment of cooperativity between RA and CT appears to be secondary to RA-induced differentiation to primitive endoderm. The above alterations in TM mRNA levels occur by a transcriptional mechanism as judged by nuclear run-on experiments. Transient gene expression experiments show that the human TM promoter is transactivated by coexpression of the human RA receptor beta. Thus, the mechanism of induction of TM expression in F9 cells undergoing differentiation to parietal endoderm appears to be similar, but not identical, to that noted for other late response genes.
Tyr-179 and Lys-183 are essential for enzymatic activity of 11β-hydroxysteroid dehydrogenase (1992)

Tyr-179 and Lys-183 are likely to be functionally important residues in 11 beta-hydroxysteroid dehydrogenase, as these amino acids are absolutely conserved in all members of the "short chain dehydrogenase" family. We modified these residues by site-directed mutagenesis of rat cDNA and transfected these constructs into CHO cells. A highly but not absolutely conserved residue, Asp-110, was also studied. Mutation of Tyr-179 to Phe or Ser completely abolished enzymatic activity (interconversion of corticosterone and 11-dehydrocorticosterone), as did Lys-183-->Arg. Asp-110-->Asn affected activity only mildly. Tyr-179 and Lys-183 may be directly involved in the catalytic function of this class of enzymes.
A Database System for Real-Time Event Aggregation in Telecommunication (1998)

Telecommunication networks process verylarge numbers of events in real time. In this environment, database applications demand both high throughput (at reasonable costs), and predictable, millisecond response times. Conventional disk-based database systems were not designed to meet such requirements. This paper sketches some real-time telecommunications applications, describes their database requirements, and then introduces Sunrise, a specialized, database system for real-time event processing and aggregation in telecommunication. Sunrise’s architecture features shared-nothing parallelism, a mainmemory storage manager (DataBlitz), and a programming tool which allows new services to be authored and installed in an on-line system without interrupting event processing. Sunrise is an industrial-strength system, and has been used as the platform for a number of telecommunication applications with real-time event-processing and aggregation requirements.
Sustainable Power Generation in Microbial Fuel Cells Using Bicarbonate Buffer and Proton Transfer Mechanisms (2007)

Phosphate buffer solution has been commonly used in MFC studiesto maintain a suitable pH for electricity-generating bacteria and/or to increase the solution conductivity. However, addition of a high concentration of phosphate buffer in MFCs could be expensive, especially for wastewater treatment. In this study, the performances of MFCs with cloth electrode assemblies (CEA) were evaluated using bicarbonate buffer solutions. A maximum power density of 1550 W/m3 (2770 mW/ m2) was obtained at a current density of 0.99 mA/cm2 using a pH 9 bicarbonate buffer solution. Such a power density was 38.6% higher than that using a pH 7 phosphate buffer at the same concentration of 0.2 M. Based on the quantitative comparison of free proton transfer rates, diffusion rates of pH buffer species, and the current generated, a facilitated proton transfer mechanism was proposed for MFCs in the presence of the pH buffers. The excellent performance of MFCs using bicarbonate as pH buffer and proton carrier indicates that bicarbonate buffer could be served as a low-cost and effective pH buffer for practical applications, especially for wastewater treatment.
Semiconductor Nanowires for Subwavelength Photonics Integration (2005)

This article focuses on one-dimensional (1D) semiconductor subwavelength optical elements and assesses their potential use as active and passive components in photonic devices. An updated overview of their optical properties, including spontaneous emission, ultrafast carrier dynamics, cavity resonance feedback (lasing), photodetection, and waveguiding, is provided. The ability to physically manipulate these structures on surfaces to form simple networks and assemblies is the first step toward integrating chemically synthesized nanomaterials into photonic circuitry. These high index semiconductor nanowires are capable of efficiently guiding light through liquid media, suggesting a role for such materials in microfluidics-based biosensing applications.
Automated diagnostic indexing by natural language processing (1992)

Developing tools for natural language understanding by computers represents an important and intense field of research. This paper describes a system developed for interpreting medical natural language in the domain of symptoms and diagnoses from complete discharge summaries and locating the correspondent category into the International Classification of Diseases, through indexing by the Systematized Nomenclature of Medicine. The indexing program makes use of the MEID dictionary and some auxiliary semantic databases for identifying adjectival forms, synonyms, hypernyms and other semantic relations while searching for the longest consistent match into SNOMED. A further subdivision of the SNOMED structure was also proposed in order to find the hierarchically superior representative of a conceptual class when this association is not assigned by the related SNOMED code number. The system can be used by any language that possesses a translation of SNOMED and ICD. The knowledge base was built using a conversion file that maps the terms of the nomenclature into the classification, which can be improved by learning from users.
Lattice codebook enumeration for generalized Gaussian source (2003)

The goal of this correspondence is to propose a low-complexity enumeration algorithm for lattice vectors, based on a geometrical interpretation and valid for different source distributions, i.e., for different L/sub p/-norms in the range 0<p/spl les/2. As a particular case, we obtain the Laplacian enumeration formula of Fischer. This point of view offers various advantages and particularly it enables one to make the link with the generalized theta-series and to reduce the algorithm to the calculation of a few convolutional products in the special cases p=1 and p=2. Using a dedicated digital signal processing (DSP) architecture, convolutional products are easy to implement and require few arithmetic operations. Our algorithm, developed for the Z/sup n/ lattice, can be generalized to other lattices like the D/sub n/.
Astrocyte differentiation mediated by LIF in cooperation with BMP2 (1999)

Leukemia inhibitory factor (LIF) and bone morphogenetic protein (BMP) 2 signal via different receptor systems. We have recently demonstrated that simultaneous stimulation of fetal mouse neuroepithelial cells with these distinct types of cytokines synergistically induces astrocyte differentiation in a 2-day culture. Here we show that astrocytes spontaneously emerge in vitro without exogenously added LIF and BMP2 in the culture of neuroepithelial cells for a much longer period. This spontaneous astrocyte differentiation is completely impaired when neuroepithelial cells deficient for gp130, a signal transducing receptor component for LIF, are used. We also show that LIF and BMP2 as well as related cytokines and respective receptor molecules are expressed in fetal mouse brain and cultured neuroepithelial cells. Taken together with our previous finding that prenatal mouse brain deficient for gp130 exhibits a severe reduction of astrocytes, it is suggested that LIF acts cooperatively with BMP2 in vivo to induce astrocyte differentiation in mouse developing brain.
Marked enhancement of antitumor immune responses in mouse brain tumor models by genetically modified dendritic cells producing Semliki Forest virus—mediated interleukin-12 (2002)

Therapy with DCs that have been pulsed with SFV-mediated IL-12 may be an excellent step in the development of new cancer vaccines. Intratumorally injected DCs that have been transiently transduced with IL-12 do not require pulsing of a source of tumor antigens to induce tumor regression.
Adaptive Mutations Producing Efficient Replication of Genotype 1a Hepatitis C Virus RNA in Normal Huh7 Cells (2004)

Despite recent successes in generating subgenomic RNA replicons derived from genotype 1b strains of hepatitis C virus (HCV) that replicate efficiently in cultured cells, it has proven difficult to generate efficiently replicating RNAs from any other genotype of HCV. This includes genotype 1a, even though it is closely related to genotype 1b. We show here that an important restriction to replication of the genotype 1a H77c strain RNA in normal Huh7 cells resides within the amino-terminal 75 residues of the NS3 protease. We identified adaptive mutations located within this NS3 domain and within NS4A, in close proximity to the essential protease cofactor sequence, that act cooperative to substantially enhance the replication of this genotype 1a RNA in Huh7 cells. These and additional adaptive mutations, identified through a series of iterative transfections and the selection of G418-resistant cell clones, form two groups associating with distinct nonstructural protein domains: the NS3/4A protease and NS5A. A combination of mutations from both groups led to robust replication of otherwise unmodified H77c genomic RNA that was readily detectable by northern analysis within 4 days of transfection into Huh7 cells. We speculate that these adaptive mutations favorably influence assembly of the replicase complex with host cell-specific proteins, or alternatively promote interactions of NS3/4A and/or NS5A with cellular proteins involved in host cell antiviral defenses.
Development and Scale-up of a Microsphere Protein Delivery System (1998)

This paper reviews the development path for the ProLease injectable microsphere delivery system for proteins using human growth hormone as an example. The process consists of four stages, the selection of a lead formulation for clinical testing, the preclinical evaluation of the lead formulation including toxicology and stability studies, the manufacture of phase I clinical supplies, and the scale-up for phase II and phase III clinical trials. The approaches used to overcome obstacles during each stage are summarized including ways of stabilizing the protein, obtaining desirable release kinetics, and manufacturing sterile batches for clinical testing. Stability, release, toxicology, and scale-up results for ProLease recombinant human growth hormone (rhGH) are given. The phase I clinical data show that bioactive rhGH was released for about 1 month in humans. This work shows that processes and procedures have been developed that enable the production of microsphere sustained release formulations for proteins suitable for clinical trails and commercialization.
Prostacyclin infusion in patients with acute myocardial infarction. (1985)

To investigate whether prostacyclin protects ischaemic myocardium in humans the effect of prostacyclin or placebo was studied in two groups of patients with acute myocardial infarction who presented within six and 16 hours of the onset of symptoms. Intravenous infusion of prostacyclin or placebo was started immediately after admission at a rate corresponding to 4-5 ng/kg/minute. The infusion was maintained for 72 hours. Clinical status, electrocardiograms, plasma enzyme activity, infarct extension during the infusion, and reinfarction after the infusion were studied. Prostacyclin was well tolerated by most patients: neither systemic blood pressure nor heart rate differed between the two groups. In the 11 patients who received treatment within six hours of the onset of symptoms prostacyclin significantly lowered the maximum plasma activities of creatine kinase MB and lactate dehydrogenase. In the 19 patients who received treatment 6-16 hours after the onset of symptoms prostacyclin had no such effect. None of the patients receiving prostacyclin had an extension of the infarction during the infusion, whereas four patients receiving placebo did; this difference was significant. These data are the first to provide evidence that prostacyclin might limit myocardial injury in patients with acute myocardial infarction.
Liposomes as a carrier for oral administration of insulin: Effect of formulation factors (1994)

The present work was undertaken to study the effect of liposome formulation factors on its efficiency as a carrier for oral administration of insulin. The insulin-liposomes were prepared by two methods: solvent evaporation hydration and solvent spherule evaporation, with various variables such as concentration of insulin (I), lecithin (L), cholesterol (C), and Tween-80 (T). It was found that the insulin-liposomes when administered orally could produce hypoglycaemia. Variation in liposome composition was found to affect the efficiency of liposome as a carrier for oral administration of insulin. A liposome system containing L, 100 mg; C, 20 mg; I, 150 units; T, 1 per cent v/v, and prepared by the solvent spherule evaporation method was found to be most effective. The effect of insulin-liposome had prolonged action in diabetes-induced rabbits compared with that in normal rabbits. The results of the insulin-liposome system were comparable with the action of 1 unit of insulin/kg administered subcutaneously.