gebhart/patrepeval huggingface dataset:
MAPKs and their relevance to arthritis and inflammation (2007)

Rheumatoid arthritis (RA) is a chronic autoimmune disease in which imbalances in pro- and anti-inflammatory cytokines promote the induction of autoimmunity, inflammation and joint destruction. The importance of inflammatory cytokines in the pathogenesis of RA has been underscored by the success of biologics that act to block the effects of cytokines, such as tumour necrosis factor-alpha, interleukin (IL)-1 or IL-6, in treating disease. Mitogen-activated protein kinases (MAPKs) have been implicated as playing key regulatory roles in the production of these pro-inflammatory cytokines and downstream signalling events leading to joint inflammation and destruction. This article reviews the evidence that MAPKs play important roles in the pathogenesis of RA and discusses their therapeutic potential as drug targets.
Ultrafast Li Electrolytes Based on Abundant Elements: Li$_{10}$SnP$_2$S$_{12}$ and Li$_{11}$Si$_2$PS$_{12}$ (2014)

We report on the synthesis and characterization of two solid electrolytes, Li$_{10}$SnP$_2$S$_{12}$ and Li$_{11}$Si$_2$PS$_{12}$, which are based exclusively on abundant elements. Both compounds feature extremely high Li ion diffusivities, with the Si-based material even surpassing the present record holder, the related electrolyte Li$_{10}$GeP$_2$S$_{12}$. The structure and dynamics were studied with multiple complementary techniques and the macroscopic diffusion could be traced back to fast Li ion hopping in the crystalline lattice.
RETRACTED: Mutations in mitochondrial cytochrome c oxidase genes segregate with late-onset Alzheimer disease (1997)

Mounting evidence suggests that defects in energy metabolism contribute to the pathogenesis of Alzheimer disease (AD). Cytochrome c oxidase (CO) is kinetically abnormal, and its activity is decreased in brain and peripheral tissue in late-onset AD. CO is encoded by both the mitochondrial and the nuclear genomes. Its catalytic centers, however, are encoded exclusively by two mitochondrial genes, CO1 and CO2 (encoding CO subunits I and II, respectively). We searched these genes, as well as other mitochondrial genes, for mutations that might alter CO activity and cosegregate with AD. In the present study, specific missense mutations in the mitochondrial CO1 and CO2 genes but not the CO3 gene were found to segregate at a higher frequency with AD compared with other neurodegenerative or metabolic diseases. These mutations appear together in the same mitochondrial DNA molecule and define a unique mutant mitochondrial genome. Asymptomatic offspring of AD mothers had higher levels of these mutations than offspring of AD fathers, suggesting that these mutations can be maternally inherited. Cell lines expressing these mutant mitochondrial DNA molecules exhibited a specific decrease in CO activity and increased production of reactive oxygen species. We suggest that specific point mutations in the CO1 and CO2 genes cause the CO defect in AD. A CO defect may represent a primary etiologic event, directly participating in a cascade of events that results in AD.
Acetamidacetal‐Cyclisierung, 2. Mitt. 2‐Aminochinoline und Pyrrolo[2,3‐b]chinoline (1986)

Abstract Aromatische Aminoketone wurden mit den Amidacetalen 3 bzw. 7 zu 2‐Amino‐ bzw. Pyrrolino‐chinolin‐Derivaten kondensiert. Amidine lassen sich als Zwischenprodukte isolieren. Die 2‐Chinolyl‐trimethylammoniumsalze sind nucleophil substituierbar.
Glioblastoma Cancer Stem-Like Cells (2012)

Glioblastoma remains one of the deadliest forms of cancer. Infiltrating cancer cells in the surrounding brain prevent complete resection, and tumor cell resistance to chemoradiation results in the poor prognosis of the glioblastoma (GBM) patient. Much research has been devoted over the years to the pathogenesis and treatment of GBM. The tumor stem cell hypothesis, which was initially described in hematopoietic cell malignancies, may explain the resistance of these tumors to conventional therapies. In this model, a certain subset of tumor cells, with characteristics similar to normal stem cells, is capable of producing the variety of cell types, which constitute the bulk of a tumor. As these tumor cells have properties distinct from those constituting the bulk of the tumor, a different approach may be required to eradicate these residual cells within the brain. Here we outline the history behind the theory of GBM cancer stem-like cells, as they are now referred to. We will also discuss the implications of their existence on commonly held beliefs about GBM pathogenesis and how they might influence future treatment strategies.
Estimating Cohesion in Small Groups Using Audio-Visual Nonverbal Behavior (2010)

Cohesiveness in teams is an essential part of ensuring the smooth running of task-oriented groups. Research in social psychology and management has shown that good cohesion in groups can be correlated with team effectiveness or productivity, so automatically estimating group cohesion for team training can be a useful tool. This paper addresses the problem of analyzing group behavior within the context of cohesion. Four hours of audio-visual group meeting data were used for collecting annotations on the cohesiveness of four-participant teams. We propose a series of audio and video features, which are inspired by findings in the social sciences literature. Our study is validated on a set of 61 2-min meeting segments which showed high agreement amongst human annotators when asked to identify meetings that have high or low cohesion.
Synthesis of complement protein C3 in the kidney is an important mediator of local tissue injury (2007)

Increased exposure of the tubular epithelium to filtered protein is a proposed mechanism of progressive renal failure associated with glomerular disease, but how this protein overload translates into tubular damage remains unclear. We have examined a model of adriamycin-induced proteinuria to determine the effect of locally synthesized C3, the central proinflammatory protein of the complement cascade. C3-/- kidney isografts placed in wild-type C3+/+ mice were protected from proteinuria-associated complement activation, tubular damage, and progressive renal failure despite the presence of abundant circulating C3. The quantity of urinary protein was unaffected by the absence of C3, and thus the influence of C3 was not explained by alteration in the filtered protein load. These results suggest that local synthesis of complement from renal epithelial cells is a critical mediator of tubular damage in proteinuria-associated renal disease. Our results concur with previous findings of increased synthesis of C3 in human tubular epithelium exposed to high concentrations of protein in vitro. Because progressive renal damage in humans associates with proteinuria regardless of cause, our findings have implications for the pathogenesis and treatment of renal failure from many common causes, immunological and nonimmunological.
Smart Antenna Systems for Mobile Communications (2003)

Note: 110 pages Reference LEMA-REPORT-2009-001 Record created on 2009-09-11, modified on 2016-08-08
Protecting Groups in Carbohydrate Chemistry (1997)

The most important protecting groups in carbohydrate chemistry are reviewed. The paper is aimed at those beginning to specialize in synthetic carbohydrate chemistry and at teachers with other specialties who wish to go beyond the content of general organic chemistry textbooks. Acetals and ketals are of fundamental importance in carbohydrate chemistry and their chemistry is presented first. In contrast to the base stability of the acetals, are the base labile esters. The complimentary use of these two protecting methods is illustrated. Methyl and benzyl ethers have a long history both in synthetic carbohydrate chemistry and in the structural studies of polysaccharides. In synthetic work benzyl ethers are the most useful. Silyl ethers are also well established in carbohydrate chemistry and the use of these protecting methods is illustrated. Phase transfer reactions and the use of cyclic stannylene derivatives to enhance the regioselectivity in the introduction of protecting groups, especially ethers, is discussed as well as some results optained with stannous chloride catalyzed reactions of diaryldiphenylmethanes with vicinal diols which gave unexpected results. The paper ends with illustrative examples of the use of protecting groups in modern synthetic carbohydrate chemistry, namely the synthesis of nitrogen containing compounds belonging to an important class of polyhydroxylated cyclic amines. Compounds of this class are potent inhibitors of glycosidase enzymes.
The Generality of DNA-Templated Synthesis as a Basis for Evolving Non-Natural Small Molecules (2001)

ADVERTISEMENT RETURN TO ISSUEPREVCommunicationNEXTThe Generality of DNA-Templated Synthesis as a Basis for Evolving Non-Natural Small MoleculesZev J. Gartner and David R. LiuView Author Information Department of Chemistry and Chemical Biology Harvard University, Cambridge, Massachusetts 02138 Cite this: J. Am. Chem. Soc. 2001, 123, 28, 6961–6963Publication Date (Web):June 22, 2001Publication History Received24 March 2001Revised8 May 2001Published online22 June 2001Published inissue 1 July 2001https://pubs.acs.org/doi/10.1021/ja015873nhttps://doi.org/10.1021/ja015873nrapid-communicationACS PublicationsCopyright © 2001 American Chemical SocietyRequest reuse permissionsArticle Views5126Altmetric-Citations251LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information SUBJECTS:Chemical reactions,Genetics,Nucleic acids,Reagents,Thiols Get e-Alerts
Abstract 4372: MiR-449a promotes breast cancer progression by activating the NF-κB pathway (2014)

Abstract INTRODUCTION MicroRNAs (miRs) have been implicated in various human malignancies and are being developed as diagnostic, predictive, and prognostic biomarkers. Our previous global profiling studies found miR-449a to be over-expressed in archival lymph node-negative invasive ductal breast carcinoma samples (n=74) when compared to normal tissues. Furthermore, miR-449a expression level was significantly associated with relapse. The mechanism(s) by which miR-449a functions remains unknown, and the aim of the current study was therefore to elucidate the roles and mRNA targets of miR-449a in breast cancer. MATERIAL AND METHODS MiR-449a expression was evaluated in six human breast cancer cell lines (T47D, MDA-MB-468, MDA-MB-231, MCF-7, MDA-MB-453, and ZR75-1). Three of these cell lines, T47D, MMDA-MB-468, and MDA-MB-231, were selected and used to assess the biological effects of miR-449a on cell viability, clonogenicity, cell migration, and invasion. Downstream target genes were identified by combining in silico miRWalk prediction and cell line/patient sample microarray data. Targets were validated using qRT-PCR and luciferase reporter assays. RESULTS Consistent with our global profiling work, several (4/6) of the tested breast cancer cell lines over-expressed miR-449a. CDC20B, the miR-449a host gene and an essential regulator of cell division, was also over-expressed. Knockdown of miR-449a resulted in significantly decreased cell viability, clonogenic survival, migration, and invasion. MiR-449a candidate targets were then identified by integrating in silico prediction algorithms, cell line mRNA expression profiling (Affymetrix Human Genome U133 Plus 2.0), and clinical specimen mRNA expression data. Two genes, CRIP2 (Cysteine rich protein 2, a transcription factor) and PRKAG1 (Protein Kinase, AMP-Activated, Gamma 1 Non-Catalytic), were verified as miR-449a targets using qRT-PCR. Moreover, direct interactions between miR-449a and the 3′-UTRs of both CRIP2 and PRKAG1 were confirmed using luciferase reporter assays. Inhibition of CRIP2 by miR-449a allowed for NF-κB-induced transcription of survival, proliferation, and growth-related genes, providing further evidence for the role of miR-449a in breast cancer progression. CONCLUSIONS MiR-449a is over-expressed in breast cancer cells, promoting cellular proliferation, migration, and invasion. One mechanism by which miR-449a functions is to down-regulate CRIP2, leading to NF-kB activation and possible cancer progression. Further investigations into gene regulation by miR-449a may reveal other promising targets for the management of breast cancer. Citation Format: Wei Shi, Matthew Lee, Ryunosuke Kogo, Jeff Bruce, Christine How, Kenneth W. Yip, Fei-Fei Liu. MiR-449a promotes breast cancer progression by activating the NF-κB pathway. [abstract]. In: Proceedings of the 105th Annual Meeting of the American Association for Cancer Research; 2014 Apr 5-9; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2014;74(19 Suppl):Abstract nr 4372. doi:10.1158/1538-7445.AM2014-4372
Alpha1-Antitrypsin Deficiency — A Model for Conformational Diseases (2002)

Alpha1-antitrypsin is a member of a family of protease inhibitors known as the serpins. Mutations in these molecules can lead to disease, not only because the biologic activity of the protease in tissue is increased, but also because the mutations result in misfolded (i.e., conformationally abnormal) protease molecules that accumulate in tissue. This review article summarizes the action of these protease inhibitors and how mutations lead to their accumulation in particular neurodegenerative disorders such as prion encephalopathies and Alzheimer's disease.
Vulnerability of Zigbee to impulsive noise in electricity substations (2011)

The vulnerability of Zigbee technology to noise in an electricity substation environment is assessed. Substation noise obtained from a measurement campaign is modelled as a Symmetric α-Stable process. The parameters of the model are estimated from the measurements and the resulting model is used to investigate the likely BER performance of Zigbee technology deployed in a substation.
In Vitro Activity of the Antifungal Plant Defensin RsAFP2 against Candida Isolates and Its In Vivo Efficacy in Prophylactic Murine Models of Candidiasis (2008)

We show that RsAFP2, a plant defensin that interacts with fungal glucosylceramides, is active against Candida albicans, inhibits to a lesser extent other Candida species, and is nontoxic to mammalian cells. Moreover, glucosylceramide levels in Candida species correlate with RsAFP2 sensitivity. We found RsAFP2 prophylactically effective against murine candidiasis.
Structural Evidence for a Functional Role of Human Tissue Nonspecific Alkaline Phosphatase in Bone Mineralization (2001)

The human tissue nonspecific alkaline phosphatase (TNAP) is found in liver, kidney, and bone. Mutations in the TNAP gene can lead to Hypophosphatasia, a rare inborn disease that is characterized by defective bone mineralization. TNAP is 74% homologous to human placental alkaline phosphatase (PLAP) whose crystal structure has been recently determined at atomic resolution (Le Du, M. H., Stigbrand, T., Taussig, M. J., Ménez, A., and Stura, E. A. (2001) J. Biol. Chem, 276, 9158-9165). The degree of homology allowed us to build a reliable TNAP model to investigate the relationship between mutations associated with hypophosphatasia and their probable consequences on the activity or the structure of the enzyme. The mutations are clustered within five crucial regions, namely the active site and its vicinity, the active site valley, the homodimer interface, the crown domain, and the metal-binding site. The crown domain and the metal-binding domain are mammalian-specific and were observed for the first time in the PLAP structure. The crown domain contains a collagen binding loop. A synchrotron radiation x-ray fluorescence study confirms that the metal in the metal-binding site is a calcium ion. Several severe mutations in TNAP occur around this calcium site, suggesting that calcium may be of critical importance for the TNAP function. The presence of this extra metal-binding site gives new insights on the controversial role observed for calcium.
Modifications That Stabilize Human Immunodeficiency Virus Envelope Glycoprotein Trimers in Solution (2000)

The functional unit of the human immunodeficiency virus type 1 (HIV-1) envelope glycoproteins is a trimer composed of three gp120 exterior glycoproteins and three gp41 transmembrane glycoproteins. The lability of intersubunit interactions has hindered the production and characterization of soluble, homogeneous envelope glycoprotein trimers. Here we report three modifications that stabilize soluble forms of HIV-1 envelope glycoprotein trimers: disruption of the proteolytic cleavage site between gp120 and gp41, introduction of cysteines that form intersubunit disulfide bonds, and addition of GCN4 trimeric helices. Characterization of these secreted glycoproteins by immunologic and biophysical methods indicates that these stable trimers retain structural integrity. The efficacy of the GCN4 sequences in stabilizing the trimers, the formation of intersubunit disulfide bonds between appropriately placed cysteines, and the ability of the trimers to interact with a helical, C-terminal gp41 peptide (DP178) support a model in which the N-terminal gp41 coiled coil exists in the envelope glycoprotein precursor and contributes to intersubunit interactions within the trimer. The availability of stable, soluble HIV-1 envelope glycoprotein trimers should expedite progress in understanding the structure and function of the virion envelope glycoprotein spikes.
Switchable Holographic Polymer-Dispersed Liquid Crystal Reflection Gratings Based on Thiol−Ene Photopolymerization (2003)

Holographic reflection gratings in polymer-dispersed liquid crystals (H-PDLCs) were formed by thiol−ene photopolymerization. Using UV laser light and a single prism, electrically switchable reflection gratings in blue, green, yellow, and red colors were fabricated. Results indicate that thiol−ene polymers function as better hosts for H-PDLC than multifunctional acrylate as matrixes. These differences are the result of a much different temporal structure development caused by fundamental differences in the polymerization propagation mechanism: a step-growth addition mechanism for the thiol−ene system compared to a chain-growth addition mechanism in multifunctional acrylates. Morphology studies by TEM support these conclusions, as striking differences in droplet shape and uniformity are observed. Discrete nematic droplets with a nearly spherical shape were seen. Thiol−ene polymers offer lower switching fields, higher diffraction efficiencies, better optical properties, and higher thermal stabilities. The response times of the thiol−ene gratings were five times slower than those of acrylates.
The potential of targeting Ras proteins in lung cancer (2015)

The Ras pathway is a major driver in lung adenocarcinoma: over 75% of all cases harbor mutations that activate this pathway. While spectacular clinical successes have been achieved by targeting activated receptor tyrosine kinases in this pathway, little, if any, significant progress has been achieved targeting Ras proteins themselves or cancers driven by oncogenic Ras mutants. New approaches to drug discovery, new insights into Ras function, new ways of attacking undruggable proteins through RNA interference and new ways of harnessing the immune system could change this landscape in the relatively near future.
The Influence of ASEAN Bond Market Integration in the Philippines’ Inflationary Pressures, Credit Expansions, and its Challenges (2022)

Bond markets have grown mature in many countries; however, the quality of financial integration varies across ASEAN economies. In the case of bond markets in the ASEAN +3, they experienced fast development; however, they are still less integrated. This study attempts to examine the ramifications of the ASEAN bond market integration and past crises to the Philippines’ inflation, credit, and growth and identify what impedes the development of the bond market for the period of 1992 to 2017. The study also aims to have a more in-depth analysis on preventing rises from happening and controlling both credit expansions and inflationary pressures. The Ordinary Least Square method (OLS) was used to examine the relationship of inflation, credit, bond market index, real interest rate, and integration to the Philippines’ growth. This led to this paper providing empirical insights that credit has a significant positive relationship with GDP growth; while, inflation has a significant negative relationship with GDP growth. However, the bond market index and integration showed insignificant negative results. This study provides possible reasons for the said conclusion and suggests ways not only to develop and grow the debt market in the Philippines but also to sustain long-run economic stability and growth to become on par with other ASEAN economies.
Semiconductor Laser Power Enhancement by Control of Gain and Power Profiles (2015)

We present theoretical calculations investigating the output power limitations of GaAs-based semiconductor lasers and the experimental results showing significant improvement of output power. To understand the influence of power limitation mechanisms, semiconductor laser with standard and unfolded cavity designs is studied. Our analysis reveals that an unfolded cavity laser enables more homogeneous longitudinal gain and intracavity optical intensity with reduced levels as compared with the standard cavity. Hence, an unfolded laser has theoretically lower power penalties induced by linear and nonlinear effects. For a 5.7-mm long laser cavity with 100-μm wide aperture, the experimental results demonstrate 21-W output from standard cavity whereas the unfolded cavity design achieves 33-W at 920 nm, which is >55% enhancement of the output, confirming the prediction of the theoretical calculations. The method represents a major step toward understanding semiconductor laser power limitations and realizing higher power output by control of longitudinal gain and power profiles.
Effects of Transcutaneous Electrical Nerve Stimulation on Pain, Pain Sensitivity, and Function in People With Knee Osteoarthritis: A Randomized Controlled Trial (2012)

Both HF-TENS and LF-TENS increased PPT in people with knee osteoarthritis; placebo TENS had no significant effect on PPT. Cutaneous pain measures were unaffected by TENS. Subjective pain ratings at rest and during movement were similarly reduced by active TENS and placebo TENS, suggesting a strong placebo component of the effect of TENS.