gebhart/patrepeval huggingface dataset:
Morphology of human sweat ducts observed by optical coherence tomography and their frequency of resonance in the terahertz frequency region (2015)

It is crucial to understand the various biological effects induced by terahertz (THz) electromagnetic waves with the rapid development of electronic and photonic devices operating in the THz frequency region. The presence of sweat glands plays an important role in THz wave interactions with human skin. We investigated the morphological features of sweat ducts using optical coherence tomography (OCT) to further understand such phenomena. We observed remarkable features of the ducts, such as their clear helical structure. The intersubject and intrasubject variations in the diameter of sweat ducts were considerably smaller than the variations in other structural parameters, such as length and number of turns. Based on the sweat duct dimensions and THz dielectric properties of skin measured using terahertz time-domain spectroscopy (THz-TDS), we calculated the resonating frequency of the sweat duct under the assumption of it functioning as a helical antenna. Here, we show that the resonance frequency in the axial mode of operation lies in the THz wave region with a centre frequency of 0.44 ± 0.07 THz. We expect that these findings will further our understanding of the various health consequences of the interaction of THz waves with human beings.
Idiopathic Pulmonary Fibrosis: Clinically Meaningful Primary Endpoints in Phase 3 Clinical Trials (2012)

Definitive evidence of clinical efficacy in a Phase 3 trial is best shown by a beneficial impact on a clinically meaningful endpoint-that is, an endpoint that directly measures how a patient feels (symptoms), functions (the ability to perform activities in daily life), or survives. In idiopathic pulmonary fibrosis (IPF), we believe the endpoints that best meet these criteria are all-cause mortality and all-cause nonelective hospitalization. There are no validated measures of symptoms or broader constructs such as health status or functional status in IPF. A surrogate endpoint is defined as an indirect measure that is intended to substitute for a clinically meaningful endpoint. Surrogate endpoints can be appropriate outcome measures if validated. However, validation requires substantial evidence that the effect of an intervention on a clinically meaningful endpoint is reliably predicted by the effect of an intervention on the surrogate endpoint. For patients with IPF, there are currently no validated surrogate endpoints.
Poly(ethylene oxide) and Polystyrene Encapsulated Quantum Dots: Highly Fluorescent, Functionalizable, and Ultrastable in Aqueous Media (2013)

The polymer encapsulation of quantum dots via seeded emulsion polymerization is a powerful method for the preparation of extraordinarily stable fluorescent particles and furthermore allows simple and straightforward in situ functionalization of the polymeric shell. Both features are inevitable for the application of quantum dots as targetable fluorescent probes in advanced biomedical studies. In particular, polymer encapsulated quantum dots showed only marginal loss of quantum yields when exposed to Cu2+ ions, which under nonoptimized conditions completely quenched quantum dot fluorescence. This will allow the application of copper-catalyzed click chemistry. Furthermore, by simple addition of functional surfactants or functional monomers during the seeded emulsion polymerization process, a broad range of in situ functionalized polymer-coated quantum dots were obtained. This was demonstrated by purposeful modulation of the zeta potential encapsulated of quantum dots and conjugation of dyestuff. Successful functionalization was unequivocally proven by total reflection X-ray fluorescence.
Differential Effects of Antiretroviral Nucleoside Analogs on Mitochondrial Function in HepG2 Cells (2000)

Numerous studies have reported effects of antiviral nucleoside analogs on mitochondrial function, but they have not correlated well with the observed toxic side effects. By comparing the effects of the five Food and Drug Administration-approved anti-human immunodeficiency virus nucleoside analogs, zidovudine (3'-azido-3'-deoxythymidine) (AZT), 2',3'-dideoxycytidine (ddC), 2', 3'-dideoxyinosine (ddI), 2',3'-didehydro-2',3'-deoxythymidine (d4T), and beta-L-2',3'-dideoxy-3'-thiacytidine (3TC), as well as the metabolite of AZT, 3'-amino-3'-deoxythymidine (AMT), on mitochondrial function in a human hepatoma cell line, this issue has been reexamined. Evidence for a number of mitochondrial defects with AZT, ddC, and ddI was found, but only AZT induced a marked rise in lactic acid levels. Only in mitochondria isolated from AZT (50 microM)-treated cells was significant inhibition of cytochrome c oxidase and citrate synthase found. Our investigations also demonstrated that AZT, d4T, and 3TC did not affect the synthesis of the 11 polypeptides encoded by mitochondrial DNA, while ddC caused 70% reduction of total polypeptide content and ddI reduced by 43% the total content of 8 polypeptides (including NADH dehydrogenase subunits 1, 2, 4, and 5, cytochrome c oxidase subunits I to III, and cytochrome b). We hypothesize that in hepatocytes the reserve capacity for mitochondrial respiration is such that inhibition of respiratory enzymes is unlikely to become critical. In contrast, the combined inhibition of the citric acid cycle and electron transport greatly enhances the dependence of the cell on glycolysis and may explain why apparent mitochondrial dysfunction is more prevalent with AZT treatment.
Lower Motor and Primary Sensory Neuron Diseases With Peroneal Muscular Atrophy (1968)

THIS report gives the neurologic, genetic, and electrophysiologic findings of a prospective study of kinships with different hereditary neurologic disorders having symmetric neurogenic weakness and atrophy as an early- and often major manifestation. The study was undertaken to obtain more reliable information about the natural history of these disorders, to test the usefulness of electro physiologic studies in distinguishing affected from nonaffected persons, to compare the results of nerve biopsies from representative affected persons with these disorders, and to develop a more meaningful classification. In this, the first of two articles on the subject, the results of neurologic, genetic, and electrophysiologic studies of 67 persons with hypertrophic neuropathy of the Charcot-Marie-Tooth type, five persons with hypertrophic neuropathy of the Dejerine-Sottas type, and 150 unaffected relatives are given. We also wished to determine whether these syndromes were phenotypic variations of one or several diseases or were separate entities on the
Ovarian cancer screening. The role of ultrasound in early detection (1995)

Ultrasound screening for ovarian cancer has not demonstrated adequate sensitivity and specificity, thus it is not used widely outside of the clinical trial setting. Current clinical guidelines for ovarian cancer screening as well as exploratory methods for use in early ovarian cancer detection are presented.
Structural Origin of Circularly Polarized Iridescence in Jeweled Beetles (2009)

Bright Shiny Beetles The beautiful iridescent colors found on the wings of butterflies and on the bodies of beetles have attracted the attention of brilliant minds over the past centuries, starting with Newton, who understood that these colors must involve “thin film structures.” In 1911 Michelson described the metallic appearance of these beetles, and in the late 1960s Neville and Caveney discussed the optical properties in the context of cholesteric liquid crystals. Sharma et al. (p. 449 ; see the Perspective by Vukusic ) examined the metallic green beetle Chrysina gloriosa , which selectively reflects left circularly polarized light when illuminated with unpolarized light. The underlying cellular structure of the beetle exoskeleton is organized primarily in a hexagonal pattern, with variations in the pentagonal and heptagonal arrangements depending on the local curvature. Thus, the ordering of the cells in concentric, nested arcs is indeed analogous to the ordering of the molecules in a cholesteric (or chiral nematic) liquid crystal.
Web data extraction based on partial tree alignment (2005)

This paper studies the problem of extracting data from a Web page that contains several structured data records. The objective is to segment these data records, extract data items/fields from them and put the data in a database table. This problem has been studied by several researchers. However, existing methods still have some serious limitations. The first class of methods is based on machine learning, which requires human labeling of many examples from each Web site that one is interested in extracting data from. The process is time consuming due to the large number of sites and pages on the Web. The second class of algorithms is based on automatic pattern discovery. These methods are either inaccurate or make many assumptions. This paper proposes a new method to perform the task automatically. It consists of two steps, (1) identifying individual data records in a page, and (2) aligning and extracting data items from the identified data records. For step 1, we propose a method based on visual information to segment data records, which is more accurate than existing methods. For step 2, we propose a novel partial alignment technique based on tree matching. Partial alignment means that we align only those data fields in a pair of data records that can be aligned (or matched) with certainty, and make no commitment on the rest of the data fields. This approach enables very accurate alignment of multiple data records. Experimental results using a large number of Web pages from diverse domains show that the proposed two-step technique is able to segment data records, align and extract data from them very accurately.
Venezuelan Equine Encephalitis Virus, Southern Mexico (2004)

Equine epizootics of Venezuelan equine encephalitis (VEE) occurred in the southern Mexican states of Chiapas in 1993 and Oaxaca in 1996. To assess the impact of continuing circulation of VEE virus (VEEV) on human and animal populations, serologic and viral isolation studies were conducted in 2000 to 2001 in Chiapas State. Human serosurveys and risk analyses indicated that long-term endemic transmission of VEEV occurred among villages with seroprevalence levels of 18% to 75% and that medical personnel had a high risk for VEEV exposure. Seroprevalence in wild animals suggested cotton rats as possible reservoir hosts in the region. Virus isolations from sentinel animals and genetic characterizations of these strains indicated continuing circulation of a subtype IE genotype, which was isolated from equines during the recent VEE outbreaks. These data indicate long-term enzootic and endemic VEEV circulation in the region and continued risk for disease in equines and humans.
Fluorescent and Electroactive Cyclic Assemblies from Perylene Tetracarboxylic Acid Bisimide Ligands and Metal Phosphane Triflates (2001)

Tetraaryloxy-substituted perylene tetracarboxylic acid bisimides with one or two 4-pyridyl receptor substituents at the imide functionality were synthesized and employed in transition metal directed self-assembly with Pd(II) and Pt(II) phosphane triflates. Upon mixing of the components, quantitative formation of functional molecular square-type complexes containing four dye molecules and model complexes of a 2:1 (perylene bisimide ligand:transition metal ion) stoichiometry was observed. The isolated metallosupramolecular squares were characterized by 1H and 31P [1H] NMR spectroscopy as well as conventional electrospray ionization (ESI) and ESI-FTICR mass spectrometry, which gave evidence for the structure and the high stability of these giant cyclic dye assemblies (molecular weight (3a) 8172, Pt-Pt corner diagonal ca. 3.4 nm). Studies of the optical absorption and fluorescence properties and the electrochemistry and spectroelectrochemistry of both the perylene bisimide ligands and the perylene bisimide metal complexes show that Pt(II) coordination does not interfere with the optical and electrochemical properties of the perylene bisimide ligands; this gives squares with high fluorescence quantum yields (phiF (3a)=0.88) and three fully reversible redox couples. The latter could be unambiguously related to quantitative formation of perylene bisimide radical cations (E1/2 = +0.93 V vs. Fc/Fc+), radical anions (E1/2= - 1.01 V vs. Fc/Fc+), and dianions (E1/2 = -1.14 V vs. Fc/Fc+); these redox reactions change the charge state of the cyclic assembly from +12 to zero. In contrast, Pd(II) coordination influenced the electrochemical properties of the assembly because of an irreversible palladium reduction at E1/2= -1.15 V versus Fc/Fc+. Finally, dynamic ligand exchange processes between different metallosupramolecular assemblies were investigated by multinuclear NMR and electrospray mass spectrometry. These studies confirmed the reversible nature of the pyridine-Pt(II)/Pd(II) coordination process.
Cutting Edge: The Absence of C3 Demonstrates a Role for Complement in Th2 Effector Functions in a Murine Model of Pulmonary Allergy (2001)

Asthma is a chronic disease of the lung resulting from airway obstruction. Although the initiating causes are not entirely clear, the airway inflammation in asthma is associated with Th2 lymphocytes and their cytokines, particularly IL-4, which play a prominent role in this disease by regulating airway hyperresponsiveness, eosinophil activation, and IgE synthesis. Historically, complement was not thought to contribute to the pathogenesis of asthma. However, using C3-deficient mice in an allergen-induced model of pulmonary allergy, we demonstrate that complement may impact key features of this disease. When challenged with allergen, mice deficient in C3 exhibit diminished airway hyperresponsiveness and lung eosinophilia. Furthermore, these mice also have dramatically reduced numbers of IL-4-producing cells and attenuated Ag-specific IgE and IgG1 responses. Collectively, these results demonstrate that C3-deficient mice have significantly altered allergic lung responses and indicate a role for the complement system in promoting Th2 effector functions in asthma.
A Pyrrole‐Imidazole Polyamide Motif for Recognition of Eleven Base Pair Sequences in the Minor Groove of DNA (1997)

Abstract A new upper limit of binding site size is defined for the 2:1 overlapped polyamide: DNA motif. Eight‐ring polyamides composed of four‐ring subunits containing pyrrole (Py) and imidazole (Im) amino acids linked by a central β‐alanine (β) spacer („4‐β‐4 ligands”︁) were designed for recognition of eleven base pair sequences as antiparallel dimer (4‐β‐4) 2 .DNA complexes in the minor groove. The DNA binding properties of three polyamides, ImPyPyPy‐β‐PyPyPyPy‐β‐Dp, ImImPyPy‐β‐PyPyPyPy‐β‐Dp, and ImImImPy‐β‐PyPyPyPy‐β‐Dp, were analyzed by footprinting experiments on DNA fragments containing the respective match sites 5'‐AGTAATTTACT‐3', 5'‐AGGTATTACCT‐3', and 5'‐AGGGATTCCCT‐3' (Dp = dimethylaminopropylamide). Quantitative footprint titrations reveal that each polyamide binds its respective target site with subnanomolar affinity and 7‐fold to over 30‐fold specificity over double‐base‐pair mismatch sites. A 20‐fold decrease in binding affinity is observed for placement of a side‐by‐side β‐β pairing opposite G.C/C.G relative to placement opposite a A.T/T.A base pair. The use of side‐by‐side antiparallel β‐alanine residues as an A.T/T.A‐specific DNA binding element provides a new pairing rule for polyamide design. Expanding the DNA binding site size targeted by pyrrole‐imidazole polyamides represents an important step in the development of cell‐permeable synthetic ligands for the control of gene‐specific regulation.
Uses of Plant Gene Silencing (1998)

(1998). Uses of Plant Gene Silencing. Biotechnology and Genetic Engineering Reviews: Vol. 15, No. 1, pp. 79-120.
Frequency and Interrelations of Risk Factors for Chronic Low Back Pain in a Primary Care Setting (2009)

Our results shed in light for the first time the interrelation and the respective contribution of several previously identified cLBP risk factors. They suggest that risk factors representing a "work-related" dimension are the most important cLBP risk factors in the working population.
Myocardial clearance kinetics of technetium-99m-SQ30217: a marker of regional myocardial blood flow. (1990)

SQ30217 is a new, technetium-99m-(99mTc) labeled perfusion agent introduced for cardiac imaging. To evaluate the myocardial tracer kinetics, 99mTc-SQ30217, was injected intracoronarily in open-chested dogs under baseline conditions and after administration of intravenous (i.v.) dipyridamole. Myocardial first-pass retention fraction averaged 0.90 +/- 0.04. Clearance of the tracer occurred in a biexponential manner. Sixty-seven percent of retained activity cleared with a half-time of 2.3 +/- 0.6 min, while the residual activity demonstrated slow clearance. The clearance rate of the rapid phase correlated with myocardial blood flow (r = 0.72, p less than 0.001). Myocardial SQ30217 clearance rate following i.v. injection as determined by dynamic imaging with tomography (SPRINT) averaged 21 +/- 4 min and increased to 13 +/- 4 min following dipyridamole. Thus, 99mTc-SQ30217 is a promising flow tracer with high initial myocardial retention and rapid tissue clearance, which allow repeated flow determinations within short time intervals using advanced SPECT technology.
Dynamic LoD for QoS management in the next generation VRML (2002)

A high speed computer network will provide us with new broadband multimedia applications. This paper discusses new functions for the next generation VRML (Virtual Reality Modeling Language) over high speed computer networks. The LoD (Level of Detail) of 3D objects is the most important function for rendering scenes dynamically while managing the QoS (Quality of Service). New requirements for the next generation VRML are discussed. We present Differential VRML (DVRML) in order to update scene graphs dynamically, and describe principles of the LoD function based on the DVRML.
A Three-Component Reaction Forming Naphthyridones – Synthesis of Lophocladine Analogs (2011)

A three-component reaction forming dihydro 2,7-naphthyridine-1-ones has been developed. These unstable dihydro intermediates can be either oxidized or reduced to form naphthyridones or tetrahydro naphthyridones, respectively. The reaction tolerates a large variety of aldehydes and amines, and the produced compounds are analogs of the natural product lophocladine A.
Acyclic purine phosphonate analogs as antiviral agents. Synthesis and structure-activity relationships (1990)

A series of 9-(phosphonoalkyl)purines, which are analogues of 9-[2-(phosphonomethoxy)ethyl]purines (guanine, PMEG, 1; adenine, PMEA, 2), were synthesized. The analogues were tested for activity against herpes simplex virus types 1 and 2 (HSV-1 and HSV-2), human cytomegalovirus (HCMV), Rauscher murine leukemia virus (R-MuLV), and human immunodeficiency virus type 1 (HIV-1). With variations in the length of the alkyl chain, the optimal activity was achieved with two carbons between the purine base and the phosphonomethoxy functionality. Despite the structural similarity and the close pKa2 value of 8 to that of PMEG, no phosphorylation of 8 was observed by the bovine brain guanylate kinase. Since all isosteric analogues of PMEG (7-9) were not inhibitory against HSV-1 and HSV-2, the presence of the 3'-oxygen atom in the PME purines proved critical for anti-HSV activity. Introduction of the 1'-methyl group on the PMEG side chain significantly reduced its anti-HSV activity. Analogue 11, which is a mimic of the phosphate by incorporation of the alpha,alpha-difluoro carbon, was ineffective against HSV-1 and HSV-2. These results suggest that the structural requirements of PME purines for anti-HSV activity appear to be very strict.
The CUHTK-Entropic 10xRT Broadcast News Transcription System (1999)

This paper describes the development of the CUHTK-Entropic 10xRT Broadcast News Transcription System. Previous HTK broadcast news transcription systems have focused on maximising accuracy with few constraints on compute power available. In order to develop a system running in under 10 times real time on a single CPU, detailed investigation and optimisation of the system architecture and mode of operation was required. This paper outlines those developments and discusses the way in which operation under 10xRT was ensured despite variability of the data to be recognised. On the 1998 test the system produced an average word error rate of 16.1% running in 9.5xRT. 1. Introduction As the state-of-the-art in broadcast news transcription continues to improve, interest is growing in the range of applications for the transcription of such audio sources. However, most research on such systems is heavily focused on increasing accuracy and there has been relatively few investigations into the tra...
Immunotherapy of Metastatic Melanoma Using Genetically Engineered GD2-Specific T cells (2009)

Redirecting human T lymphocytes to the tumor-associated ganglioside GD2 generates effector cells with antimelanoma activity that should be testable in subjects with disease.
Bimonthly high dose leucovorin and 5-fluorouracil 48-hour continuous infusion in patients with advanced colorectal carcinoma (1997)

In the current study, bimonthly high dose LV and a high dose 48-hour infusion of 5-FU had activity in patients with advanced colorectal carcinoma. Toxicity is notably low, and the regimen is suitable for use in combination with other drugs.
Beam commissioning of the new proton therapy system for University of Tsukuba (2002)

Beam commissioning of the new proton therapy system for University of Tsukuba was started in September 2000. The present system employs a synchrotron with a maximum energy of 250 MeV and two rotating gantries. The beam was successfully accelerated up to 250 MeV and transported to the irradiation nozzles. The position of the beam extracted from the synchrotron was confirmed to be very stable and sufficient flatness for the irradiation area was realized by using the dual ring double scattering method developed at University of Tsukuba. Furthermore, synchrotron operation triggered by patient respiration signal was succeeded.
Alliin Lyase from Garlic,Allium sativum:Investigations on Enzyme/Substrate, Enzyme/Inhibitor Interactions, and on a New Coenzyme (1989)

A purified alliin lyase (EC 4.4.1.4) from garlic ( ALLIUM SATIVUM L.) has been characterized by kinetic and spectral data under the addition of different substrates, inhibitors, and reducing agents. Hydroxylamine sulfate (50 microM) inhibited the alliinase activity by nearly 90%. Rotenone revealed a similar effect at a concentration of 10 nano-molar. Examination of L-cysteine, and a series of related compounds, on a competitive inhibitory effect on the alliinase-catalyzed alliin cleavage resulted in a list of essential functional groups for substances with this property. Spectral studies on the purified, yellow appearing alliinase enzyme confirmed the existance of an unknown flavinecoenzyme.