gebhart/patrepeval huggingface dataset:
Inhibition of platelet-derived growth factor autocrine growth stimulation by a monoclonal antibody to the human alpha platelet-derived growth factor receptor. (1993)

A potent neutralizing monoclonal antibody to the human alpha platelet-derived growth factor (PDGF) receptor (alpha PDGFR) was raised by immunizing BALB/c mice with 32D cells expressing the human alpha PDGFR. This monoclonal antibody, designated alpha R1, immunoprecipitated human, monkey, rabbit, pig, dog, and cat, but not hamster, rat, or mouse alpha PDGFRs. Comparison with PR292, a monoclonal antibody previously generated against the alpha PDGFR, showed that both recognized alpha PDGFR extracellular domains, but neither demonstrated reactivity against the beta PDGFR. In vitro binding studies revealed that alpha R1, but not PR292, detection of the alpha PDGFR was blocked by either PDGF AA or PDGF BB. These results strongly suggest that the receptor ligand-binding domain spatially overlapped with the alpha R1 epitope. Monoclonal antibody alpha R1 also inhibited PDGF stimulation of [3H]thymidine uptake by 32D cells expressing the alpha PDGFR (32D alpha R) as well as autocrine growth stimulation of 32D alpha R cells transfected with and expressing PDGF AA or PDGF BB. Therefore, monoclonal antibody alpha R1 may be useful in the detection and growth inhibition of malignancies in which PDGF autocrine stimulation and/or alpha PDGFR overexpression plays an important role(s).
Sulfated polysaccharides are potent and selective inhibitors of various enveloped viruses, including herpes simplex virus, cytomegalovirus, vesicular stomatitis virus, and human immunodeficiency virus (1988)

Several sulfated polysaccharides (dextran sulfate, pentosan polysulfate, fucoidan, and carrageenans) proved to be potent inhibitors for herpes simplex virus, human cytomegalovirus, vesicular stomatitis virus, Sindbis virus, and human immunodeficiency virus. They were moderately inhibitory to vaccinia virus but not inhibitory to adenovirus, coxsackievirus, poliovirus, parainfluenza virus, and reovirus. These results indicate that, with the exception of parainfluenza virus, enveloped viruses are specifically susceptible to the inhibitory activity of sulfated polysaccharides.
Expanding the optogenetics toolkit (2015)

A naturally occurring channel for inhibitory optogenetics is discovered [Also see Report by Govorunova et al. ]
Advances in Radiotherapy and Implications for the Next Century: A Historical Perspective (2009)

The use of ionizing radiation for the treatment of cancer dates back to the late 19th century, remarkably soon after Roentgen described X-rays in 1895 and the use of brachytherapy after Marie and Pierre Curie discovered radium in 1898. These initial efforts stimulated a revolution of conceptual and
Life with Oxygen (2007)

The survival of all metazoan organisms is dependent on the regulation of O2 delivery and utilization to maintain a balance between the generation of energy and production of potentially toxic oxidants. Hypoxia-inducible factor 1 (HIF-1) is a transcription factor that functions as a master regulator of oxygen homeostasis and has essential roles in metazoan development, physiology, and disease pathogenesis. Remarkable progress has been made in delineating the molecular mechanisms whereby changes in cellular oxygenation are transduced to the nucleus as changes in gene transcription through the activity of HIF-1. Pharmacologic agents that activate or inhibit the hypoxia signal transduction pathway may be useful therapies for ischemic and neoplastic disorders, respectively, which are the major causes of mortality in industrialized societies.
The role of Gliadel wafers in the treatment of high-grade gliomas (2013)

Glioblastoma multiforme (GBM) is the most aggressive brain tumor. Standard treatment includes surgery, radiation and chemotherapy. Prognosis is dismal with an average survival of approximately 1 year. Gliadel wafers are one treatment option, working as a source for local chemotherapy delivery. Their use is controversial with questionable survival benefit and potential side effects. We reviewed the literature in an effort to clarify their role in the treatment of high-grade gliomas. A systematic PubMed search was performed using the keywords 'Gliadel', 'carmustine' or 'BCNU wafers' in newly diagnosed high-grade glioma patients. Treatment regimen, and median survival were analyzed. Adverse event ratio was calculated by computing the number of adverse events in a study per patient receiving carmustine wafers. Nineteen studies with 795 patients were included in our review. Survival was 8.7-22.6 months with a mean overall survival (OS) of 16.2 months (control survival is approximately 14 months with surgery and adjuvant chemoradiotherapy). Adverse event ratio using Gliadel wafersin control group. Complication rate was 42.7%. Gliadel wafers may marginally increase survival and local control in newly diagnosed GBM patients but are associated with a high complication rate; therefore, we do not recommend using Gliadel wafers in patients with GBM. Further research may be warranted once a safer alternative to Gliadel wafers has been introduced.
Verteporfin photodynamic therapy in the rat model of choroidal neovascularization: angiographic and histologic characterization. (2002)

Verteporfin PDT for experimental CNV in the rat is a feasible, effective, and reproducible model that can be used for testing the efficacy of adjunctive therapy to verteporfin PDT.
Lysophosphatidic acid acyltransferase-β: a novel target for induction of tumour cell apoptosis (2003)

Phosphatidic acid (PA) is a component of cellular membranes that is also a mediator of certain cell signalling functions associated with oncogenesis. These include ras/raf/Erk and Akt/mTor [1-3]. The authors have investigated whether it would be possible to interrupt these known oncogenic pathways through the inhibition of lysophosphatidic acid acyltransferase (LPAAT), an enzyme that catalyses the biosynthesis of PA. The expression and activity of the LPAAT-beta isoform are elevated in human tumours, and the respective gene displays transforming capacity when overexpressed in vitro. Inhibition by either genetic means or by isoform-specific small molecules results in a block to cell signalling pathways and apoptosis. Furthermore, the small-molecule inhibitors of LPAAT-beta are not cytotoxic to a number of normal cell types, including primary bone marrow progenitors, indicating a differential dependence of tumour cells on LPAAT-beta function. These discoveries indicate that LPAAT-beta represents a potential novel cancer therapy target.
Bi-directional optical communication at 10 Gb/s on FR4 PCB using reflow solderable SMT transceiver (2008)

We report the development of 10 Gbps bi-directional optical data communications on FR4 PCB to realize opto-electronic circuit board (OECB). The work includes the design, fabrication and high-speed performance of a 10 Gbps surface mount optical transceiver module that can be reflow soldered, developing efficient optical coupling methods using precise injection molded lenses and studying their attachment methods to the optical source and receiver, realizing efficient optical coupling between transmitter and receiver subsystems for a multi mode epoxy waveguide on the PCB and developing a test vehicle. The compact and highly integrated SMT optical transceiver module in multilayer LTCC substrate consists of optical devices like VCSEL and PIN photo diode and the electrical circuits like VCSEL driver, trans impedance amplifier (TiA) and limiting amplifier (LA). The module contains a cavity, in which the electrical, optical devices and passives are mounted using passive attachment methods, a recess to house a lens and locator holes to align the lens with the VCSEL and PIN. The lens is an injection molded epoxy lens with biconvex elements for both transmitter and receiver integrated as a single element to improve the coupling between the source and the waveguide on the PCB. The module is designed to relax the assembly tolerances of optical elements so that normal conventional electronic assembly process can be used. Solder bumps are formed on the bottom layer of the LTCC to convert the module into a cavity down SMT package. The waveguides are made of high temperature epoxy material and are attached to the PCB using adhesive material. The 45deg mirrors are formed through laser ablation process. The module is reflow soldered using conventional reflow oven. The opto-electronic circuit board (OECB) is performance evaluated and performance results are presented.
The Ins and Outs of RNAi in Mammalian Cells (2004)

The ability to utilize the RNA interference (RNAi) machinery for silencing target-gene expression has created a lot of excitement in the research community. RNAi in mammalian cells is achieved through introduction or expression of 21-23 bp small interfering RNAs (siRNAs) in cells or animals. Currently, there are six ways of producing siRNAs. siRNAs can be produced by chemical synthesis, in vitro transcription, or RNase III/Dicer digestion of long dsRNAs. Alternatively, they can be expressed in vivo from plasmids, PCR cassettes, or viral vectors that include a CMV or polymerase III (pol III) transcription unit. So far, these approaches have been used to create siRNAs for use in loss-of-function studies. However, it is clear that siRNAs also hold great promise as therapeutic tools. First, their activity seems to be very sequence-specific. Moreover, siRNAs could be modified in order to increase their stability and potency in vivo. Here, we will review the issues and findings related to siRNA design and production. Moreover, we will summarize new findings on siRNA specificity, modification, and delivery, which are critical to their use as therapeutic agents.
Variaciones del bienestar individual relacionadas con la salud: un nuevo modelo de valoración monetaria (2014)

En este articulo se propone un nuevo metodo para evaluar economicamente los
procesos sanitarios. Esta nueva alternativa importa de la Economia de la Imposicion la
evaluacion del impacto de los impuestos en el bienestar de los individuos. El supuesto
basico del modelo es que una enfermedad actua sobre las rentas del enfermo de
manera equivalente a la de un impuesto proporcional sobre la renta (health tax) y, por
tanto, un tratamiento medico podria asimilarse a un subsidio proporcional. El modelo
calcula el tipo impositivo a partir del indice de calidad de vida EuroQol-5D. En el
analisis empirico se utilizan datos de las rentas economicas declaradas, procedentes
del panel del Impuesto sobre la Renta Personal del Instituto de Estudios Fiscales (IEF), y
la ultima Encuesta Nacional de Salud de Espana (ENSE 2012-13). La aplicacion del
modelo propuesto a los estados de salud reportados por los ciudadanos espanoles
establece que el valor monetario de un QALY, derivado de las variaciones en su
bienestar, es de 19.880 euros.
Phosphorothioate Oligodeoxynucleotides Bind to the Third Variable Loop Domain (v3) of Human Immunodeficiency Virus Type 1 gp120 (1993)

Although having variability in primary sequence, the v3 loop of gp120 in pathogenic strains of human immunodeficiency virus type-1 (HIV-1) is positively charged and known to interact with sulfated polysaccharides. Because the interaction of sulfated polysaccharides with the v3 loop inhibits HIV infection in vitro, we investigated the interaction of the v3 loop with phosphodiester (PO) and phosphorothioate (PS) oligodeoxynucleotides (oligos). In a solid-phase ELISA assay, a PS 28-mer homopolymer of cytidine, SdC28, blocked the binding of the v3 loop-specific monoclonal antibody (mAb) 9284 to rgp120 more potently than did dextran sulfate. In addition, like dextran sulfate, SdC28 appeared to bind specifically to the v3 loop, because neither compound inhibited the binding of other anti-gp120 mAbs. In contrast to PS oligos, PO oligos did not inhibit mAb 9284 binding. The length dependence of the interaction of PS oligos with the v3 loop was studied by using a series of PS oligos. A discrete loss of inhibiting activity occurred as a function of decreasing PS oligo length, which was most marked between PS oligos of 18-mer and 12-mer in length. We further probed the chemical nature of the interaction of oligos with gp120 by measuring the gp120 binding affinities of PS and PO oligos of various lengths. We employed a 5'-32P-labeled alkylating oligo, ClRNH32P-OdT15, and determined that the Km of gp120 binding is 4 microM. We also determined values of competition constant (Kc) for PS competitors of ClRNH32P-OdT15 binding. The binding constant (= 1/Kc) for PS oligos showed a discrete increase in gp120 binding for PS oligos > 12- to 18-mer in length, with no further increment beyond an 18-mer. Given the important role of the v3 loop in HIV-1 pathogenicity, these data suggest that therapeutic trials of PS oligos should be considered.
Neisseria gonorrhoeae Type IV Pili Undergo Multisite, Hierarchical Modifications with Phosphoethanolamine and Phosphocholine Requiring an Enzyme Structurally Related to Lipopolysaccharide Phosphoethanolamine Transferases (2006)

The zwitterionic phospho-forms phosphoethanolamine and phosphocholine are recognized as influential and important substituents of pathogen cell surfaces. PilE, the major pilin subunit protein of the type IV pilus (Tfp) colonization factor of Neisseria gonorrhoeae undergoes unique, post-translational modifications with these moieties. These phospho-form modifications have been shown to be O-linked alternately to a specific, conserved serine residue of PilE. However, the enzymes and precursors involved in their addition are unknown, and the full spectrum of PilE post-translational modifications has yet to be defined. Here, an intact protein-based mass spectrometric approach was integrated with bioinformatics and reverse genetics to address these matters. Specifically we show that a protein limited in its distribution to pathogenic Neisseria species and structurally related to enzymes implicated in phosphoethanolamine modification of lipopolysaccharide is necessary for PilE covalent modification with phosphoethanolamine and phosphocholine. These findings strongly suggest that protein phospho-form modification is mechanistically similar to processes underlying analogous modifications of prokaryotic saccharolipid glycans. We also show that PilE undergoes multisite and hierarchical phospho-form modifications and that the stoichiometries of site occupancy can be influenced by PilE primary structure and the abundance of the pilin-like protein PilV. Together, these findings have important implications for the structure and antigenicity of PilE.
Prevalence and factor/s associated with smoking among adults in Malaysia - Findings from the National Health and Morbidity Survey (NHMS) 2015 (2018)

The prevalence of smoking among Malaysians, aged 15 years and over, remains high despite the implementation of several anti-smoking measures over the past decades. Specially tailored anti-smoking policies or measures, particularly targeting males, the Malays, younger adults and those with lower educational attainment, are greatly warranted to reduce the prevalence of smoking in Malaysia.
The Novel Formulation Design of Self-emulsifying Drug Delivery Systems (SEDDS) Type O/W Microemulsion I: Enhancing Effects on Oral Bioavailability of Poorly Water Soluble Compounds in Rats and Beagle Dogs (2005)

We examined the design of the versatile novel self-emulsifying drug delivery systems (SEDDS) type O/W microemulsion formulation which enhances the oral bioavailability by raising the solubility of poorly water soluble compounds. Namely, seven kinds of poorly water soluble compounds such as disopyramide, ibuprofen, ketoprofen, tolbutamide, and other new compounds, as the model compounds were used to compare the plasma concentration profile of the compound following single oral administration of each compound to rats and beagle dogs as a solution, an oily solution, a suspension (or a powder), an O/W microemulsion, and a SEDDS type O/W microemulsion. And the enhancing effect of the SEDDS type O/W microemulsion on the gastrointestinal absorption of these compounds was evaluated. In the components of the SEDDS type O/W microemulsion, medium chain fatty acid triglyceride (MCT), diglyceryl monooleate (DGMO-C), polyoxyethylene hydrogenated castor oil 40 (HCO-40), and ethanol were used as an oil, a lipophilic surfactant, a hydrophilic surfactant, and a solubilizer, at the mixture ratio of 25/5/45/25 (w/w%), respectively. Thereby, to six kinds of the model compounds except disopyramide, the solubility was from 340 to 98,000 times that in water, and the AUCs in plasma concentration of the compound were equivalent to that of solution or O/W microemulsion administration, or was increased by 1.5 to 78 times that of suspension administration. Accordingly, this novel SEDDS type O/W microemulsion is the versatile, useful formulation which enhances the oral bioavailability by raising the solubility of poorly water soluble compounds.
Heating Around Intravascular Guidewires by Resonating RF Waves (2000)

We examined the unwanted radiofrequency (RF) heating of an endovascular guidewire frequently used in interventional magnetic resonance imaging (MRI). A Terumo guidewire was partly immersed in an oblong saline bath to simulate an endovascular intervention. The temperature rise of the guidewire tip during an FFE sequence [average specific absorption rate (SAR) = 3.9 W/kg] was measured with a Luxtron fluoroscopic fiber. Starting from 26°C, the guidewire tip reached temperatures up to 74°C after 30 seconds of scanning. Touching the guidewire may cause sudden heating at the point of contact, which in one instance caused a skin burn. The excessive heating of a linear conductor like the guidewire can only be explained by resonating RF waves. The capricious dependencies of this resonance phenomenon on environmental factors have severe consequences for predictability and safety guidelines. J. Magn. Reson. Imaging 2000;12:79–85. © 2000 Wiley-Liss, Inc.
Effect of gamma radiation and annealing on ultra‐oriented polyethylene (1978)

Abstract Filaments of ultra‐oriented high density polyethylene were solid‐state extruded at an extrusion (draw) ratio of 26 and subsequently irradiated under vacuum by a cobalt‐60 source at doses of 10,15, 20, 40 and 60 megarads (MRad). Several identically prepared but unirradiated strands were also tested. One set of samples at each dose was immersed in a silicone oil bath for one half hour at 128°C and one set was given no post‐irradiation thermal treatment. Characterization of the resultant morphologies included differential scanning calorimetry (DSC), birefringence, thermomechanical analysis (TMA), and tensile testing. Results from DSC measurements indicate that initial radiation crosslinking only slightly disrupts the crystal lattice, but on subsequent melting and re crystallization, the chains are unable to recrystallize effectively in their former habit. In all cases, melting point and crystallinity decrease with increasing radiation dose. Birefringence and TMA results indicate that orientation is not disrupted by irradiation. For unannealed samples, Young's modulus increases slightly then levels off while tensile strength and elongation at break increase initially, then drop, For annealed irradiated samples, Young's modulus rises at first, then levels off at higher doses. Tensile strength and elongation at break increase significantly with increasing radiation treatment, then essentially reach constant values at highest doses.
Exploring gut microbes in human health and disease: Pushing the envelope (2014)

Humans have coevolved with their microbes over thousands of years, but this relationship, is now being dramatically affected by shifts in the collective human microbiome resulting from changes in the environment and societal norms. Resulting perturbations of intestinal host-microbe interactions can lead to miscues and altered host responses that increase the risk of pathogenic processes and promote "western" disorders such as inflammatory bowel diseases, cancers, obesity, diabetes, autism, and asthma. Given the current challenges and limitations in gene therapy, approaches that can reshape the gut microbiome represent a reasonable strategy for restoring the balance between host and microbes. In this review and commentary, we highlight recent progress in our understanding of the intestinal microbiome in the context of health and diseases, focusing on mechanistic concepts that underlie the complex relationships between host and microbes. Despite these gains, many challenges lie ahead that make it difficult to close the gap between the basic sciences and clinical application. We will discuss the potential therapeutic strategies that can be used to manipulate the gut microbiota, recognizing that the promise of pharmabiotics ("bugs to drugs") is unlikely to be completely fulfilled without a greater understanding of enteric microbiota and its impact on mammalian physiology. By leveraging the knowledge gained through these studies, we will be prepared to enter the era of personalized medicine where clinical inventions can be custom-tailored to individual patients to achieve better outcomes.
Identification of carriers of a variant plasma prealbumin (transthyretin) associated with familial amyloidotic polyneuropathy type I. (1985)

A method is described for detecting carriers of a variant plasma prealbumin that is associated with familial amyloidotic polyneuropathy (FAP) type I. It is based on the finding of an extra methionine in the variant prealbumin, at position 30 from the amino terminals. Since normal prealbumin has only one methionine (position 13), treatment with cyanogen bromide (CNBr), which cleaves only at methionines, results in two peptides. CNBr treatment of the variant prealbumin gives three peptides. The extra can then be detected in two ways: by HPLC using a reverse phase C18 column, and by sequential Edman degradation. Each method can detect as little as 1% variant prealbumin in isolated plasma prealbumin, and therefore, can identify carriers of the gene for the variant protein. Since FAP type I usually is not manifest until after the childbearing years, this method to identify carriers of the gene offers a new approach for genetic counseling of families with this disease. To date, kindreds with hereditary amyloidosis that could benefit from these studies include those with FAP type I of Swedish, Japanese, and Portuguese origins.
Control de la contaminación microbiológica en unidades dentales (2005)

El control de la calidad microbiológica del agua en las unidades dentales es un tema de gran interés ya que tanto los pacientes como el personal laboral están continuamente expuestos al agua y a los aerosoles generados por la unidad. En este artículo se describen las condiciones que favorecen el crecimiento de microorganismos en el interior de la tuberías de las unidades dentales y se discuten los riesgos que este crecimiento microbiano supone para los pacientes y el personal laboral. Se recopilan varios casos de infecciones asociadas a la contaminación en unidades dentales y se realiza un estudio de las condiciones microbiológicas de las unidades dentales en Estados Unidos y en Europa.
Features ofTri101, the Trichothecene 3-O-Acetyltransferase Gene, Related to the Self-defense Mechanism inFusarium graminearum (1998)

A structural gene of Tri101, which encodes trichothecene 3-O-acetyltransferase, was isolated as a 3-kb XhoI-XbaI fragment from the trichothecene producer Fusarium graminearum strain F15. The gene contained no introns, and the coding region was 0.7-kb downstream of a putative UTP-ammonia ligase gene which obviously is not related to the biosynthesis of trichothecenes. Tri101 was expressed when T-2 toxin was added, but this induction was not dependent on the expression level of Tri6, a transcription activator gene in the trichothecene biosynthetic and regulatory gene cluster.