gebhart/patrepeval huggingface dataset:
Molecular cloning of cDNA encoding adipogenesis inhibitory factor and identity with interleukin‐11 (1991)

A cDNA encoding a novel adipogenesis inhibitory factor (AGIF) that inhibits the process of adipogenesis in mouse 3T3-L1 preadipocytes was cloned from a cDNA library of the human bone marrow-derived stromal cell line KM-102. The cloned cDNA contains an open reading frame coding for an AGIF precursor of 199 amino acids. Analysis of the sequence of this cDNA revealed identity of this factor with a recently reported novel cytokine, designated interleukin-11 (IL-11). AGIF/IL-11 may play an important role in stromal cell-associated hematopoeisis through its regulatory action on adipocyte differentiation in the bone marrow microenvironment.
HER4-mediated Biological and Biochemical Properties in NIH 3T3 Cells (1996)

The EGF receptor family of tyrosine kinase growth factor receptors is expressed in a variety of cell types and has been implicated in the progression of certain human adenocarcinomas. The most recent addition to this family of receptors, HER4, was expressed in NIH 3T3 cells to determine its biological and biochemical characteristics. Cells expressing HER4 were responsive to heregulin beta2 as demonstrated by an increase in HER4 tyrosine phosphorylation and ability to form foci on a cell monolayer. HER4 exhibited in vitro kinase activity and was able to phosphorylate the regulatory subunit of phosphatidylinositol 3-kinase and SHC. Peptide competition studies identified tyrosine 1056 of HER4 as the phosphatidylinositol 3-kinase binding site and tyrosines 1188 and 1242 as two potential SHC binding sites. Interestingly, transfection of HER4 into NIH 3T3 cells conferred responsiveness to EGF with respect to colony formation in soft agar. It was also found that in response to heregulin beta2, endogenous murine HER1 or transfected human HER1 became phosphorylated when HER4 was present. This demonstrates that HER1 and HER4 can exist in a heterodimer complex and likely activate each other by transphosphorylation.
Microbial Inhibitors of Cranberries (1986)

ABSTRACT An ethanolic extract of Cranberry exerted a significant antimicrobial effect on Saccharomyces bayanus and Pseudomonas fluorescens . The antimicrobial properties of cranberries were due to a number of factors. First, the low pH (2.6) inhibited many microorganisms per se, and its effect on the dissociation of benzoic acid made the inhibition more drastic. Secondly, after raising the pH to 5.2, cranberry juice still did not support the growth of S. bayanus . Growth did occur at pH 5.2 after 0.3% yeast nitrogen base was added. Thirdly, proanthocyanidins and flavonols were found to be the major microbial inhibitors other than benzoic acid. The results showed that proanthocyanidins provided 21.3% of the inhibition, the flavonols 18.5% and benzoic acid 15.6%.
Xenogeneic gene expression in chimeric mice derived from rat--mouse hybrid cells. (1979)

Thymidine kinase-deficient OTT6050 mouse teratocarcinoma cells were fused with hypoxanthine phosphoribosyltransferase-deficient Fu5AH rat hepatoma cells by means of inactivated Sendai virus. The resulting hybrid cells, which were selected in hypoxanthine/aminopterin/thymidine medium, retained almost all of the mouse chromosomes and various numbers of rat chromosomes, and showed many chromosomal rearrangements. The hybrid cells, as well as both parental lines, formed tumors after subcutaneous injection into athymic nude mice. Single rat--mouse hybrid cells from a clonally established subline were transplanted into C57BL6/J mouse blastocysts carrying many genetic markers suitable for the detection of hybrid cell-derived tissue contributions. From 144 blastocysts, each of which was injected with a hybrid cell and then surgically transferred to the uterus of a pseudopregnant foster mother, 62 adult mice developed without any visible coat mosaicism. However, three of these mice showed internal hybrid-cell participation in their livers and a limited number of organs of endomesodermal origin. A tumor classifiable as hemangio endothelioma was found in the liver, the only mosaic tissue, of one of the chimeric mice. Nine different rat-specific enzyme variants were detected in the mosaic organs. A considerable number of variations concerning the presence and quantitative activity of the foreign gene products probably resulted from chromosomal segregation, tissue-specific gene activity, or dosage compensation during differentiation in vivo. Our results demonstrate that cultured malignant rat--mouse hybrid cells differentiate normally and become functionally integrated during development. The appearacne in vivo of certain rat-specific gene products that are not found in the hybrid cells under conditions in vitro indicates differential gene expression of the introduced xenogeneic chromosomes.
Nuclear magnetic resonance studies on niobium and tantalum penta-alkoxides (1968)

Variable-temperature n.m.r. studies have proved the double alkoxide-bridged bi-octahedral (edge-shared) structure of the dimeric penta-alkoxides M2(OR)10, where M = Nb or Ta and R = Me, Et, or Bui. Rapid intramolecular double exchange of alkoxide groups occurs between (i) the two types of terminal group and (ii) the terminal and bridging groups and the activation energies Ett and Etb were evaluated for Ta2(OMe)10. The presence of a monomer–dimer equilibrium was proved for the pentaisopropoxides and from equilibrium constants at various temperatures the enthalpy of dissociation of the dimer was evaluated. The monomeric t-butoxides showed a rapid intramolecular exchange down to –90°. Alcohol interchange with dimeric species was slower than with monomers.
In silico data filtering to identify new angiogenesis targets from a large in vitro gene profiling data set (2002)

The objective of this study was to use gene expression data from well-defined cell culture models, in combination with expression data from diagnostic samples of human diseased tissues, to identify potential therapeutic targets and markers of disease. Using Affymetrix oligonucleotide array technology, we identified a common profile of genes upregulated during endothelial morphogenesis into tubelike structures in three in vitro models of angiogenesis. Rigorous data selection criteria were used to identify a list of over 1,000 genes whose expression was increased more than twofold over baseline at either 4, 8, 24, 40 or 50 h. To further refine and prioritize this list, we used standard bioinformatic algorithms to identify potential transmembrane and secreted proteins. We then overlapped this gene set with genes upregulated in colon tumors vs. normal colon, resulting in a subset of 128 genes in common with our endothelial list. We removed from this list those genes expressed in 6 different colon tumor lines, resulting in a list of 24 putative, vascular-specific angiogenesis-associated genes. Three genes, gp34, stanniocalcin-1 (STC-1), and GA733-1, were expressed at levels 10-fold or more in colon tumors compared with normal mucosa. We validated the vascular-specific expression of one of these genes, STC-1, by in situ hybridization. The ability to combine in vitro and in vivo data sets should permit one to identify putative angiogenesis target genes in various tumors, chronic inflammation, and other disorders where therapeutic manipulation of angiogenesis is a desirable treatment modality.
Surface modification of indium tin oxide by plasma treatment: An effective method to improve the efficiency, brightness, and reliability of organic light emitting devices (1997)

We demonstrate the improvement of an indium tin oxide anode contact to an organic light emitting device via oxygen plasma treatment. Enhanced hole-injection efficiency improves dramatically the performance of single-layer doped-polymer devices: the drive voltage drops from &amp;gt;20 to &amp;lt;10 V, the external electroluminescence quantum efficiency (backside emission only) increases by a factor of 4 (from 0.28% to 1%), a much higher drive current can be applied to achieve a much higher brightness (maximum brightness ∼10,000 cd/m2 at 1000 mA/cm2), and the forward-to-reverse bias rectification ratio increases by orders of magnitude (from 102 to 106–107). The lifetime of the device is also enhanced by two orders of magnitude.
Viral infection can induce the production of autoantibodies (2007)

Understanding the infectious origin of autoimmune diseases is important as we aim to identify high-risk patients and disrupt this process with vaccines or other medications, ultimately delaying or even preventing the evolution of autoimmune diseases.
Hydrogen-Bonded Multilayers of a Neutral Polymer and a Polyphenol (2008)

We report on association of tannic acid (TA) with neutral or charged polymers in solution and at surfaces and contrast hydrogen-bonded and electrostatically associated polymer/TA complexes and TA/polymer layer-by-layer (LbL) films as per their stability in the pH scale. The neutral polymers used for hydrogen bonding with TA were poly(N-vinylcaprolactam) (PVCL), poly(N-vinylpyrrolidone) (PVPON), poly(ethylene oxide) (PEO), or poly(N-isopropylacrylamide) (PNIPAM), and the polymer used to explore electrostatic binding with TA was 90% quaternized poly(4-vinylpyridine) (Q90). Association of TA with polymers in solution was explored by measuring the turbidity of solutions. At surfaces, LbL film deposition and pH stability were followed by phase-modulated ellipsometry and in-situ Fourier transform infrared spectroscopy in attenuated total reflection mode (ATR-FTIR). While electrostatically stabilized films of TA with Q90 could not be deposited at low pH values (pH = 2), hydrogen-bonded films of TA with PVCL, PVPON, PEO, and PNIPAM could be constructed at pH 2 and did not dissolve until a critical dissolution pH of 9.5, 9, 8.5, and 8 (measured in 0.01 M buffer solutions) for PVCL/TA, PVPON/TA, PEO/TA, and PNIPAM/TA, respectively. In addition, all multilayers could be also constructed at pH 7.5 in solutions with low ionic strength. The high pH stability of these systems as compared to multilayers of the same neutral polymers with polyacrylic (PAA) or polymethacrylic (PMAA) acids is due to higher pKa value of TA of ∼8.5 as estimated in this paper. We also show that multilayers of TA with a copolymer of N-vinylpyrrolidone containing 20 mol % of primary amino groups, PVPON-NH2-20, were highly stable in a wide pH range from 1.3 to 11.7 because of combined stabilization through both electrostatic and hydrogen-bonding interactions. For all systems, pH windows for deposition and stability of LbL films at surfaces correlated with the phase behavior of TA complexes in solution. High pH stability of hydrogen-bonded films of TA as well as the capability of tuning the critical pH value for film dissolution in the range close to physiological pH values makes such multilayer systems promising candidates for biomedical applications.
Long‐Term Use of Subantimicrobial Dose Doxycycline Does Not Lead to Changes in Antimicrobial Susceptibility (2000)

Long-term SDD does not contribute to changes in antibiotic susceptibility.
High concentration-ethanol fermentation of raw ground corn. (1982)

Fermentation tests were carried out at 30C in batch cultures using a newly isolated ethanol tolerant yeast, Saccharomyces sp. w-y-2. The addition of fungal mycelia to the chemically defined medium stepwisely fed with sucrose increased the final ethanol concentration from 18.6 to 20.1% (v/v) within 3 days at 30C. When the liquid koji of the high raw starch-digestive amylase producing mutant HF-15 of Aspergillus awamori var. kawachi was used in the scaled-up fermentation coordinated with saccharification of raw ground corn, 20.1 % (v/v) ethanol was produced within 5 days at 30C.
Isolation and characterization of angiogenin, an angiogenic protein from human carcinoma cells (1985)

The first human tumor derived protein with in vivo angiogenic activity to be obtained in pure form has been isolated from serum-free supernatants of an established human adenocarcinoma cell line (HT-29) and named angiogenin. It was purified by cation-exchange and reversed-phase high-performance liquid chromatography; the yield was approximately 0.5 microgram/L of medium. Biological activity of angiogenin was monitored throughout purification by using the chick embryo chorioallantoic membrane assay. Statistical evaluation demonstrates that it displays activity in this system with as little as 35 fmol per egg. Moreover, only 3.5 pmol is required to induce extensive blood vessel growth in the rabbit cornea. The amino acid composition of this basic (isoelectric point greater than 9.5), single-chain protein of molecular weight approximately 14 400 has been determined. The amino terminus is blocked, and the carboxyl-terminal residue is proline.
Blast Load Effects on Highway Bridges. II: Failure Modes and Multihazard Correlations (2013)

Bridges with different seismic design levels and concrete compressive strengths have been analyzed for three levels of underdeck blast loads. It is observed that there are several other damage modes besides failure of bridge columns that may contribute to a complete collapse of the bridge. In general, it is demonstrated that an increased seismic resistance leads to improved performance during blast loads. Both concrete strength and seismic capacity are equally effective for bridges designed with higher seismic resistance. Extensive simulations have been performed to establish a correlation between the ratio of ductility and strength reduction factor, μ/R, and pier top displacement for concrete with different compressive strengths. It has been observed that the pier top displacement decreases drastically for μ/R>6. Moreover, it is observed from results of 27 simulations that bridge piers with μ/R>6 survive high levels of blast loads (without failure of piers).
Correctly folded Pfs48/45 protein of Plasmodium falciparum elicits malaria transmission-blocking immunity in mice (2008)

Malaria kills >1 million people each year, in particular in sub-Saharan Africa. Although asexual forms are directly responsible for disease and death, sexual stages account for the transmission of Plasmodium parasites from human to the mosquito vector and therefore the spread of the parasite in the population. Development of a malaria vaccine is urgently needed to reduce morbidity and mortality. Vaccines against sexual stages of Plasmodium falciparum are meant to decrease the force of transmission and consequently reduce malaria burden. Pfs48/45 is specifically expressed in sexual stages and is a well established transmission-blocking (TB) vaccine candidate. However, production of correctly folded recombinant Pfs48/45 protein with display of its TB epitopes has been a major challenge. Here, we show the production of a properly folded Pfs48/45 C-terminal fragment by simultaneous coexpression with four periplasmic folding catalysts in Escherichia coli. This C-terminal fragment fused to maltose binding protein was produced at medium scale with >90% purity and a stability over at least a 9-month period. It induces uniform and high antibody titers in mice and elicits functional TB antibodies in standard membrane feeding assays in 90% of the immunized mice. Our data provide a clear perspective on the clinical development of a Pfs48/45-based TB malaria vaccine.
Intraoral Scanner Technologies: A Review to Make a Successful Impression (2017)

To overcome difficulties associated with conventional techniques, impressions with IOS (intraoral scanner) and CAD/CAM (computer-aided design and manufacturing) technologies were developed for dental practice. The last decade has seen an increasing number of optical IOS devices, and these are based on different technologies; the choice of which may impact on clinical use. To allow informed choice before purchasing or renewing an IOS, this article summarizes first the technologies currently used (light projection, distance object determination, and reconstruction). In the second section, the clinical considerations of each strategy such as handling, learning curve, powdering, scanning paths, tracking, and mesh quality are discussed. The last section is dedicated to the accuracy of files and of the intermaxillary relationship registered with IOS as the rendering of files in the graphical user interface is often misleading. This overview leads to the conclusion that the current IOS is adapted for a common practice, although differences exist between the technologies employed. An important aspect highlighted in this review is the reduction in the volume of hardware which has led to an increase in the importance of software-based technologies.
Improved External Efficiency InGaN-Based Light-Emitting Diodes with Transparent Conductive Ga-Doped ZnO as p-Electrodes (2004)

Transparent conductive Ga-doped ZnO (ZnO:Ga) was fabricated to serve as p-contacts of InGaN-based light-emitting diodes (LEDs) using molecular-beam epitaxy. As-grown ZnO:Ga films typically have resistivities of ρ=2-4×10-4 Ω·cm, and over 80% transparency in the near UV and visible wavelength ranges. The current-voltage characteristics between as-grown ZnO:Ga contacts and p-GaN layers were ohmic. The brightness of LEDs fabricated with ZnO:Ga p-contacts was nearly double compared to LEDs with conventional Ni/Au p-contacts. We obtained the external efficiency as high as 20.8% in the case of the near UV LED. The forward voltage at 20 mA was found not to increase even after the lamp LED with ZnO:Ga were kept for 80 h in high humidity and high temperature environments.
Active power filtering by a flying-capacitor multilevel inverter with capacitor voltage balance (2008)

A new control strategy is developed for a four-level flying capacitor multilevel inverter to function as an active power filter (APF). This employs space vector modulation (SVM) scheme. However inverter switching vectors and sequences are determined according to the swings of capacitor voltage values at each level. A modified predictive current control law is developed This takes into account the derivative of the reference current in order to improve the performance of the conditioner when reference current changes quickly. Simulation study has shown that the proposed scheme leads to high performance harmonic current compensation for both steady and transient state operations and capacitor voltages at all levels are well balanced.
Ferrous Human Cystathionine β-Synthase Loses Activity during Enzyme Assay Due to a Ligand Switch Process (2007)

Cystathionine beta-synthase (CBS) is a pyridoxal-5'-phosphate-dependent enzyme that catalyzes the condensation of serine and homocysteine to form cystathionine. Mammalian CBS also contains a heme cofactor that has been proposed to allosterically regulate enzyme activity via the heme redox state, with FeII CBS displaying approximately half the activity of FeIII CBS in vitro. The results of this study show that human FeII CBS spontaneously loses enzyme activity over the course of a 20 min enzyme assay. Both the full-length 63-kDa and truncated 45-kDa form of CBS slowly and irreversibly lose activity upon reduction to the FeII form. Additionally, electronic absorption spectroscopy reveals that FeII CBS undergoes a heme ligand exchange to FeII CBS424 when the enzyme is incubated at 37 degrees C and pH 8.6. The addition of enzyme substrates or imidazole has a moderate effect on the rate of the ligand switch, but does not prevent conversion to the inactive species. Time-dependent spectroscopic data describing the conversion of FeII CBS to FeII CBS424 were fitted to a three-state kinetic model. The resultant rate constants were used to fit assay data and to estimate the activity of FeII CBS prior to the ligand switch. Based on this fit it appears that FeII CBS initially has the same enzyme activity as FeIII CBS, but FeII CBS loses activity as the ligand switch proceeds. The slow and irreversible loss of FeII CBS enzyme activity in vitro resembles protein denaturation, and suggests that a simple regulatory mechanism based on the heme redox state is unlikely.
No-reference perceptual quality assessment of JPEG compressed images (2003)

Human observers can easily assess the quality of a distorted image without examining the original image as a reference. By contrast, designing objective No-Reference (NR) quality measurement algorithms is a very difficult task. Currently, NR quality assessment is feasible only when prior knowledge about the types of image distortion is available. This research aims to develop NR quality measurement algorithms for JPEG compressed images. First, we established a JPEG image database and subjective experiments were conducted on the database. We show that Peak Signal-to-Noise Ratio (PSNR), which requires the reference images, is a poor indicator of subjective quality. Therefore, tuning an NR measurement model towards PSNR is not an appropriate approach in designing NR quality metrics. Furthermore, we propose a computational and memory efficient NR quality assessment model for JPEG images. Subjective test results are used to train the model, which achieves good quality prediction performance.
Effects of ultraviolet A and B on the skin barrier: a functional, electron microscopic and lipid biochemical study. (1991)

To investigate the effects of ultraviolet A (UVA) and B (UVB) on the skin barrier, functional, electron microscopic and lipid biochemical studies were performed on normal and UV-irradiated skin of volunteers. Skin reactivity against primary irritants was evaluated using the alkali resistance test, the dimethylsulfoxide test and the sodium lauryl sulfate test. In all 3 irritation models, UVA- and UVB-irradiated areas were more resistant to damage than normal skin, indicating improvement of the barrier function after UV irradiation. In a second series of experiments, biopsies were taken and processed for electron microscopic evaluation of the stratum corneum. UVB significantly increased the horny cell layers; UVA did not alter the thickness of the stratum corneum. Finally, stratum corneum lipids were extracted in vivo and quantified after high-performance thin-layer chromatography. UVB and, to some extent, UVA exposure increased the amount of all stratum corneum lipids. This was also observed in all major ceramide subfractions.
CCR2 expressing CD4+ T lymphocytes are preferentially recruited to the ileum in Crohn's disease (2004)

The chemokine receptor CCR2 appears to be an important contributor to accumulation of CD4(+) T lymphocytes in the ileum in small bowel Crohn's disease. Blockade of CCR2 may provide a novel therapeutic alternative.
Ki67 LABELLING INDEX: AN INDEPENDENT PREDICTOR OF PROGRESSION IN PROSTATE CANCER TREATED BY RADICAL PROSTATECTOMY (1996)

The clinical course of prostate cancer is highly variable and cannot satisfactorily be predicted by histological criteria alone. Both tumour cell proliferation and neuroendocrine differentiation have been suggested as additional prognostic parameters, neuroendocrine differentiation being considered to enhance tumour cell proliferation. This study investigated the prognostic value of tumour cell proliferation [Ki67 labelling index (LI), MIB 1] and neuroendocrine differentiation and their relationship to each other. One hundred and thirty-seven paraffin-embedded radical prostatectomy specimens were examined. Neuroendocrine differentiation was found in 58 per cent of cases, but was not associated with pTN stage, Gleason score, Ki67 LI, or tumour progression. Ki67 LI was not significantly associated with pTN stage or with Gleason score. High grade (P = 0.0005), advanced local stage (P = 0.0004), positive lymph nodes (P = 0.02), and high Ki67 LI (P = 0.0203) were predictors of tumour progression if univariate analysis was performed, but Cox stepwise regression showed that only advanced local stage (P = 0.0025) and Ki67 LI (P = 0.0105) were independent predictors of tumour progression, the relative risk being 3.6 and 2.5, respectively. It is concluded that Ki67 is an important prognostic marker in prostate cancer with a potential for routine application.