gebhart/patrepeval huggingface dataset:
Analysis and Design of a Thermoelectric Energy Harvesting System With Reconfigurable Array of Thermoelectric Generators for IoT Applications (2017)

In this paper, a novel thermoelectric energy harvesting system with a reconfigurable array of thermoelectric generators (TEGs), which requires neither an inductor nor a flying capacitor, is proposed. The proposed architecture can accomplish maximum power point tracking (MPPT) and voltage conversion simultaneously via the reconfiguration of the TEG array, and demonstrate significantly improved power conversion efficiency over the conventional switching converter and switched-capacitor architectures. Two systematical scaling approaches- powers-of-two scaling and maximum-factor scaling-are presented and analyzed to serve as the design guideline, catering for reconfigurable TEG arrays of different sizes. In order to optimize the chip area required, a custom-designed, multi-level hierarchy and systematically scalable switch array that requires a reasonable number of switches is also developed to enable the reconfiguration of the TEG array. The 16-node and 12-node versions of the proposed system have been implemented in a standard 0.35-μm CMOS process. Measurement results verify the analysis, and confirm that the proposed system can maintain a higher than 88.8% efficiency over a wide range of temperature gradients.
Therapeutic Update on Glycopeptide and Lipopeptide Antibiotics (1988)

Glycopeptide antibiotics in the form of vancomycin have been available for almost 30 years. In the past, vancomycin usually was reserved as an alternative agent to treat staphylococcal and streptococcal infection in patients with a penicillin allergy or hemodialysis shunt infection. With the increasing frequency of both methicillin-resistant Staphylococcus aureus and Staphylococcus epidermidis, now it is often used as a first-line agent. Over a 10-year period, vancomycin sales have increased by almost $1 hundred million. Several new glycopeptide and lipopeptide antibiotics are in various stages of evaluation. While vancomycin resistance to date is a rare phenomenon, these drugs represent a potentially more potent and safer antibiotic alternative to vancomycin. Teicoplanin and daptomycin are two of these investigational agents.
Amino acids: Chemistry, functionality and selected non-enzymatic post-translational modifications (2012)

The ultimate goal of proteomics is determination of the exact chemical composition of protein species, including their complete amino acid sequence and the identification of each modified side chain, in every protein in a biological sample and their quantification. We are still far from achieving this goal due to limitations in analytical methodology and data analysis but also due to the fact that we surely have not discovered all amino acid modifications that occur in nature. To detect modified side chains and to discover new, still unknown amino acid derivatives, an understanding of the chemistry of the reactive groups of amino acids is mandatory. This tutorial focuses on the chemistry of the amino acid side chains and addresses non-enzymatic modifications. By highlighting some exemplary reactions a glimpse of the huge diversity of modified amino acids provides the reader with sufficient insight into amino acid chemistry to raise the awareness for unexpected side chain modifications. We further introduce the reader to a terminology, which enables the comprehensive description of the exact chemical composition of a protein species, including its full amino acid sequence and all modifications of its amino acid side chains. This Tutorial is part of the International Proteomics Tutorial Programme (IPTP number 10).
Carbon-13 NMR study of the effects of fasting and diabetes on the metabolism of pyruvate in the tricarboxylic acid cycle and of the utilization of pyruvate and ethanol in lipogenesis in perfused rat liver (1987)

13C NMR has been used to study the competition of pyruvate dehydrogenase with pyruvate carboxylase for entry of pyruvate into the tricarboxylic acid (TCA) cycle in perfused liver from streptozotocin-diabetic and normal donor rats. The relative proportion of pyruvate entering the TCA cycle by these two routes was estimated from the 13C enrichments at the individual carbons of glutamate when [3-13C]alanine was the only exogenous substrate present. In this way, the proportion of pyruvate entering by the pyruvate dehydrogenase route relative to the pyruvate carboxylase route was determined to be 1:1.2 +/- 0.1 in liver from fed controls, 1:7.7 +/- 2 in liver from 24-fasted controls, and 1:2.6 +/- 0.3 in diabetic liver. Pursuant to this observation that conversion of pyruvate to acetyl coenzyme A (acetyl-CoA) was greatest in perfused liver from fed controls, the incorporation of 13C label into fatty acids was monitored in this liver preparation. Livers were perfused under steady-state conditions with labeled substrates that are converted to either [2-13C]acetyl-CoA or [1-13C]acetyl-CoA, which in the de novo synthesis pathway label alternate carbons in fatty acids. With the exception of the repeating methylene carbons, fatty acyl carbons labeled by [1-13C]acetyl-CoA (from [2-13C]pyruvate) gave rise to resonances distinguishable on the basis of chemical shift from those observed when label was introduced by [3-13C]alanine plus [2-13C]ethanol, which are converted to [2-13C]acetyl-CoA. Thus, measurement of 13C enrichment at several specific sites in the fatty acyl chains in time-resolved spectra of perfused liver offers a novel way of monitoring the kinetics of the biosynthesis of fatty acids.(ABSTRACT TRUNCATED AT 250 WORDS)
Pharmacotherapy: A Pathophysiologic Approach (1989)

Pathophysiology and pharmacotherapy cardiovascular disorders respiratory disorders gastrointestinal disorders renal disorders neurologic disorders psychiatric disorders endocrinologic disorders gynaecologic and obstetric disorders immunologic disorders bone and joint disorders disorders of the eyes, ears, nose and throat dermatologic disorders hermatologic disorders infectious diseases oncologic disorders nutrition and nutritional disorders.
Cyclosporin A inhibits smooth muscle proliferation in the vascular response to injury. (1988)

The arterial response to injury is dominated by proliferation of smooth muscle cells and infiltration of blood-borne cells in the vascular intima. Arterial smooth muscle cell proliferation is under growth factor control, but how this regulation operates in vivo is unclear. We studied the effect on arterial response to mechanical injury of cyclosporin A, a drug that inhibits T-lymphocyte activation. Cyclosporin A treatment at surgery caused a persistent inhibition of the intimal proliferative lesion. Cyclosporin A also inhibited expression of Ia antigens on smooth muscle cells in situ but had no direct effects on smooth muscle cell proliferation in culture. Therefore, the inhibition of intimal cell proliferation appears to be mediated via the immune system.
Heart disease: A textbook of cardiovascular medicine (1992)

nificantly less than the cumulative risk ofstrut fracture during their expected lifetime.
Prokaryote–eukaryote interactions identified by using Caenorhabditis elegans (2008)

Prokaryote-eukaryote interactions are ubiquitous and have important medical and environmental significance. Despite this, a paucity of data exists on the mechanisms and pathogenic consequences of bacterial-fungal encounters within a living host. We used the nematode Caenorhabditis elegans as a substitute host to study the interactions between two ecologically related and clinically troublesome pathogens, the prokaryote, Acinetobacter baumannii, and the eukaryote, Candida albicans. After co-infecting C. elegans with these organisms, we observed that A. baumannii inhibits filamentation, a key virulence determinant of C. albicans. This antagonistic, cross-kingdom interaction led to attenuated virulence of C. albicans, as determined by improved nematode survival when infected with both pathogens. In vitro coinfection assays in planktonic and biofilm environments supported the inhibitory effects of A. baumannii toward C. albicans, further showing a predilection of A. baumannii for C. albicans filaments. Interestingly, we demonstrate a likely evolutionary defense by C. albicans against A. baumannii, whereby C. albicans inhibits A. baumannii growth once a quorum develops. This counteroffensive is at least partly mediated by the C. albicans quorum-sensing molecule farnesol. We used the C. elegans-A. baumannii-C. albicans coinfection model to screen an A. baumannii mutant library, leading to the identification of several mutants attenuated in their inhibitory activity toward C. albicans. These findings present an extension to the current paradigm of studying monomicrobial pathogenesis in C. elegans and by use of genetic manipulation, provides a whole-animal model system to investigate the complex dynamics of a polymicrobial infection.
Humic Acid Induces Expression of Tissue Factor by Cultured Endothelial Cells: Regulation by Cytosolic Calcium and Protein Kinase C (1994)

Blackfoot disease is a thrombotic peripheral vascular disease causally related to the fluorescent humic acid (HA) found in the drinking water of wells in endemic areas in Taiwan. In this study we examined the effect of HA on tissue factor (TF) expression by vascular endothelial cells. Incubation of cultured human umbilical vein endothelial cells (HUVEC) with HA isolated from endemic area drinking water or with a synthetic humic acid polymer (SHA), resulted in enhanced cell surface expression of TF activity by HUVEC. The intracellular calcium level ([Ca2+]i) was measured using a calcium-specific fluorescent probe, fura 2. Changes in [Ca2+]i level were followed and quantitatively analyzed by spectrofluorometric microscopy, after incubation of the fura 2-loaded HUVEC with HA or SHA in a medium containing 1.8 mM CaCl2. Both HA and SHA increased [Ca2+]i in the presence of extracellular calcium ions, but not in their absence, indicating that influx of extracellular Ca2+ occurred during incubation of HUVEC with HA or SHA. Verapamil, a potent calcium channel blocker, did not abolish the enhancement of [Ca2+]i induced by HA or SHA, indicating that specific calcium channels may not be involved in the HA/SHA-induced elevation of [Ca2+]i. The elevated [Ca2+]i level induced by HA or SHA returned to basal level following removal of HA or SHA and incubation of the washed cells in medium containing 1.8 mM CaCl2. All these changes occurred in the absence of significant cytotoxic effects.(ABSTRACT TRUNCATED AT 250 WORDS)
Surface and adhesion properties of poly(ethylene glycol) on polyester(polyethylene terephthalate) fabric surface: Effect of air‐atmospheric plasma treatment (2011)

Abstract The surface and adhesion properties of different molecular weight poly(ethylene glycol) (PEG) (400, 1500, and 3000 g/mol) on untreated and air‐atmospheric plasma‐treated PET woven fabrics were studied, with the aim of developing durable hydrophilic PET fibrous structures. PEG application was carried out by padding of the PET fabric in aqueous solution of PEG followed by curing and drying. The surface properties of the PEG‐coated PET fabrics were then characterized using wicking test to measure the water contact angle (θ°) and capillary weight ( W c ), and using atomic force microscopy (AFM) images in the tapping mode. Results showed that without a prior air‐atmospheric plasma treatment of the PET fabric, the water contact angle decreased and capillary weight increased with the three PEGs, implying an increase in the hydrophilicity of both inner and outer PET fabric fiber surface. Air‐plasma treatment of the PET fabrics before PEG coating increases further the hydrophilicity of the inner fabric fiber surface: the capillary weight was almost doubled in the case of the three PEGs. Best results were obtained with PEG 1500: water contact angle decreasing from 82° to 51°, and the capillary weight increasing from 11 mg to 134 mg. Moreover, wash fastness test at room temperature and at 80°C confirms improved adhesion of PEG‐1500 to the plasma‐treated PET woven fabric surface, while under the same conditions the plasma‐treated PET without PEG loses completely its hydrophilic character. © 2011 Wiley Periodicals, Inc. J Appl Polym Sci, 2011.
Quantitative Coronary Angiography in the Interventional Cardiology (2011)

Coronary angiography through selective injection of radiopaque contrast agent into the coronary arteries is currently the gold standard for evaluating coronary artery disease (CAD). Subjective visual estimation of lesion severity has been shown to be inadequate due to high degrees of intraobserver and interobserver variability (Topol & Nissen, 1995). Since the late 1980s methods and algorithms for quantitative coronary angiography (QCA) have been developed in order to objectively quantify the extent of CAD (Serruys et al., 1984). Furthermore, validation of specific QCA measurements associated with clinical outcomes has led to their incorporation into various scoring systems and trials endpoint.
High-speed, low-loss silicon Mach–Zehnder modulators with doping optimization (2013)

We demonstrate a high-speed silicon Mach-Zehnder modulator (MZM) with low insertion loss, based on the carrier depletion effect in a lateral PN junction. A 1.9 dB on-chip insertion loss and a VπLπ < 2 V·cm were achieved in an MZM with a 750 μm-long phase shifter by properly choosing the doping concentration and precisely locating the junction. High-speed modulations up to 45-60 Gbit/s have been demonstrated with an additional 1.6 dB optical loss, indicating a total insertion loss of 3.5 dB. A high extinction ratio of 7.5 dB was also realized at the bit rate of 50 Gbit/s with an acceptable insertion loss of 6.5 dB.
One‐Step Formulation of Protein Microparticles with Tailored Properties: Hard Templating at Soft Conditions (2012)

Abstract Formulation of therapeutic proteins into particulate forms is a main strategy for site‐specific and prolonged protein delivery as well as for protection against degradation. Precise control over protein particle size, dispersity, purity, as well as mild preparation conditions and minimal processing steps are highly desirable. It is, however, hard to fit all these criteria with conventional preparation techniques. Here a one‐step hard‐templating synthesis of microparticles composed of functional, non‐denatured protein is reported. The method is based on filling porous CaCO 3 microtemplates with the protein near to its isoelectric point (pI) followed by pH‐ or EDTA‐mediated dissolution of the tempplates. In principle, a wide variety of proteins can be converted into microparticles using this approach. The main requirement is an overlap of the protein insolubility and a template solubility for a certain parameter (here pH or EDTA). Here the formulation of insulin particles is studied in detail and it is shown that particles consisting of high molecular weight protein (catalase) can also be prepared. In this context, the synthesis of CaCO 3 templates with controlled size, the mechanism of the protein microparticle formation and mechanical properties of the microparticles are discussed. For the first time, the fabrication of mesoporous monodispersed CaCO 3 microtemplates with identical porocity but tuned diameter from 3 to 20 μm is demonstrated. The protein particle diameter can be adjusted by choosing the appropriate template size that is critical for successful pulmonary delivery of insulin. As a first step towards insulin delivery, the in vitro release of insulin at physiological conditions is studied.
Human Estrogen Receptor (ER) Gene Promoter-P1: Estradiol-Independent Activity and Estradiol Inducibility in ER+ and ER− Cells (1997)

Estrogen receptor (ER) is expressed at a low level in normal tissues such as breast and uterus but at a high level in breast and endometrial carcinomas. A proximal element (ERF-1) located between positions +133 and +204 relative to the promoter P1 major initiation site has been recently identified in ER+ cells and contributes to the differential promoter activity between ER+ and ER- cells. In this study, MCF7 and HeLa cells were transfected with chloramphenicol acetyltransferase constructs containing ER gene promoter P1 sequences. We show here that the sequences lying between nucleotides +13 to +212 are also essential for transcription at the ER gene promoter P1 in ER- cells, which do not express ERF-1. Interestingly, on gel shift experiments, a complex specific to ER- cells forms in the region spanning nucleotides +123 to +210. We also show that promoter P1 is responsive to estradiol in cells expressing endogenous (MCF7) or exogenous ER. We further demonstrate, using mutational analysis and gel retardation assays, that the three half-estrogen response elements located between nucleotides -420 and -892 are responsible for the estradiol inducibility of promoter P1. Because estradiol has a mitogenic effect on both breast and endometrial epithelial cells, our data would give an insight into the role of estrogens in the occurrence of breast and endometrial carcinomas.
Elucidating the Essential Role of the A14 Phosphoprotein in Vaccinia Virus Morphogenesis: Construction and Characterization of a Tetracycline-Inducible Recombinant (2000)

We have previously reported the construction and characterization of vindH1, an inducible recombinant in which expression of the vaccinia virus H1 phosphatase is regulated experimentally by IPTG (isopropyl-beta-D-thiogalactopyranoside) (35). In the absence of H1 expression, the transcriptional competence and infectivity of nascent virions are severely compromised. We have sought to identify H1 substrates by characterizing proteins that are hyperphosphorylated in H1-deficient virions. Here, we demonstrate that the A14 protein, a component of the virion membrane, is indeed an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression. To enable a genetic analysis of A14's function during the viral life cycle, we have adopted the regulatory components of the tetracycline (TET) operon and created new reagents for the construction of TET-inducible vaccinia virus recombinants. In the context of a virus expressing the TET repressor (tetR), insertion of the TET operator between the transcriptional and translational start sites of a late viral gene enables its expression to be tightly regulated by TET. We constructed a TET-inducible recombinant for the A14 gene, vindA14. In the absence of TET, vindA14 fails to form plaques and the 24-h yield of infectious progeny is reduced by 3 orders of magnitude. The infection arrests early during viral morphogenesis, with the accumulation of large numbers of vesicles and the appearance of "empty" crescents that appear to adhere only loosely to virosomes. This phenotype corresponds closely to that observed for an IPTG-inducible A14 recombinant whose construction and characterization were reported while our work was ongoing (47). The consistency in the phenotypes seen for the IPTG- and TET-inducible recombinants confirms the efficacy of the TET-inducible system and reinforces the value of having a second, independent system available for generating inducible recombinants.
Femtosecond near‐infrared laser pulses as a versatile non‐invasive tool for intra‐tissue nanoprocessing in plants without compromising viability (2002)

In this report, we describe a highly reproducible femtosecond near-infrared (NIR) laser-based nanoprocessing technique that can be used both for non-invasive intra-tissue nanodissection of plant cell walls as well as selective destruction of a single plastid or part thereof without compromising the viability of the cells. The ultra-precise intra-tissue nanoprocessing is achieved by the generation of high light intensity (10(12)W cm(-2)) by diffraction-limited focusing of the radiation of an NIR (lambda = 740 and 800 nm) femtosecond titanium-sapphire laser to a sub-femtolitre volume and subsequent highly localized instantaneous plasma formation. Following nanosurgery, electron microscopical analysis of the corresponding cellular target areas revealed clean non-staggering lesions across the cell wall with a cut width measuring less than 400 nm. To our knowledge, this is the smallest cut made non-invasively within a plant tissue. Further evidence, including two-photon imaging of chlorophyll fluorescence, revealed that a single target chloroplast or part thereof can be completely knocked out using intense ultra-fast NIR pulses without any visible deleterious effect on the adjacent plastids. The vitality of the cells after nanoprocessing has been ascertained by exclusion of propidium iodide from the cells as well as by the presence of cytoplasmic streaming. The potential applications of this technical advance include developmental biology applications, particularly studies addressing spatio-temporal control of ontogenetic events and cell-cell interactions, and gravitational biology applications.
Micro implantable visual prostheses (2000)

Two micro implantable visual prosthesis systems for blind patients are described. The first system is a retina implant which is based on an implantable microelectrostimulator applicable for patients suffering from retinitis pigmentosa or macula degeneration, and has been already successfully tested in animal experiments. The second system is an intraocular vision aid based on an implantable intraocular optoelectronic display encapsulated into an silicone diaphragm which is applicable for patients suffering from bilateral corneal opacification but with intact posterior ocular segment. Both systems employ wireless power and data transmission using an 13 MHz RF-link for power transmission and either ASK modulation of the RF-carrier or an near IR optical link for data transmission from an external image acquisition and telemetry unit to both implantable micro devices.
Volatile flower oils of three genotypes of rose-scented geranium (Pelargonium sp.) (2000)

The volatile flower oils of three genotypes of rose-scented geranium (Pelargonium sp.) commercially cultivated at a high altitude (2200 m above MSL) location (Kodaikanal) in India were investigated by GC and GC–MS. Freshly collected flowers of genotypes 1, 2 and 3 on distillation produced oil yields of 0.32%, 0.34% and 0.50%, respectively. The flower oil of genotype 1 was richer in α-pinene (1.7%), (Z) and (E)-rose oxides (1.3% and 0.6%), isomenthone (6.8%), citronellol (43.8%), citronellyl formate (20.4%), citronellyl acetate (1.0%), β-caryophyllene (2.6%), citronellyl butyrate (2.1%) and citronellyl tiglate (1.9%). The flower oil of genotype 2 was richer in terpinen-4-ol (1.3%), geranyl formate (3.6%), β-bourbonene (1.2%), α-muurolene (1.3%), geranyl isovalerate (0.9%), 10-epi-γ-eudesmol (4.6%) and geranyl tiglate (2.9%). The flower oil of genotype 3 was richer in linalol (7.6%), geraniol (38.6%), geranyl acetate+geranic acid (5.2%), β-phenylethyl butyrate (4.6%), 6,9-guaiadiene (2.3%) and α-humulene (1.5%). Copyright © 2000 John Wiley & Sons, Ltd.
Dynamic optical limiting experiments on vanadium dioxide and vanadium pentoxide thin films irradiated by a laser beam (2006)

Vanadium dioxide (VO2) and vanadium pentoxide (V2O5) thin films are irradiated by a near-infrared continuous-wave laser beam and the dynamic optical limiting performance is measured. The temperature varying with time of the films induced by a laser beam is also recorded by an IR thermal sensor. Under the irradiation of a laser beam with an intensity of 255 W/cm2 and a spot diameter of 2 mm, the laser beam transmittance of the VO2 film decreases from 47% before phase transition to 28% after phase transition, and the response time is approximately 200 ms; the laser beam transmittance of the V2O5 film decreases from 51% before phase transition to 24% after phase transition, and the response time is approximately 40 ms. The optical limiting is realized by this laser heating-induced phase transition.