gebhart/patrepeval huggingface dataset:
Cyclin-dependent kinase inhibitors in the development of the central nervous system. (2001)

Introduction The development of the nervous system requires cell proliferation, cell cycle exit, differentiation, and migration of progenitor cells in a highly coordinated manner. These decisions are made after the integration of extrinsic cues with the cell cycle machinery. Results from expression analyses and deletion experiments of various positive cell cycle regulators and cdkis have revealed their key role in neural development and in the maintenance of quiescence in adults. In this review, we will attempt to provide an update of what is known about the cdkis in specific regions of the CNS across the phyla, including Caenorhabditis elegans, Xenopus laevis, Drosophila melanogaster, Mus musculus, and Rattus rattus and discuss the relation of cdkis with cyclin-cdk complexes and their substrate, the pRb. The first part of this review will highlight the current understanding of the mechanics of the cell cycle, provide a brief background of nervous system development, and outline the normal patterns of expression of the various cdkis. In the second part, we will address several key points about the functional role of cdkis in CNS development. Do cdkis participate in early patterning of the CNS in parallel with their roles in proliferation? How do cdkis regulate rates of proliferation and expansion of the neural progenitor pool? And finally, can cdkis and other cell cycle regulators function cooperatively to trigger cell cycle withdrawal and direct differentiation? Although we tried to be inclusive, we would like to apologize to all our colleagues whose work may have been omitted and that we failed to acknowledge.
Electrochemical Oxidation of Highly Oriented Pyrolytic Graphite in Sulphuric Acid Solution under Potential Pulse Condition (2009)

Abstract We investigated the electrochemical oxidation of highly oriented pyrolytic graphite (HOPG) in sulphuric acid solution under applying alternative potential pulses to elucidate the oxidation mechanism of carbon support of Pt/C catalyst under dynamic operation of polymer electrolyte fuel cells (PEFCs). After the potential pulse test between 0.6 and 1.0 V for 15 h, the capacitance of HOPG was increased and pits were found on the oxidised surface. With increase in the lower potential limit to 0.8 V, the increasing rate of capacitance was almost equal to that after holding at 1.0 V for 15 h, which suggests that carbon oxidation reaction could be accelerated in PEFCs by continual variation of the cell voltage. After the potential pulse test between 0.2 and 1.0 V, it was clarified that alcohol and carbonyl groups were accumulated on the surface of HOPG. The oxidation mechanism of HOPG under potential pulse condition was described.
Tetranuclear, Hexanuclear, and Octanuclear Copper(II) Complexes of a Series of Novel Dendritic Poly(phthalazine) Ligands (1995)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTTetranuclear, Hexanuclear, and Octanuclear Copper(II) Complexes of a Series of Novel Dendritic Poly(phthalazine) LigandsYisheng Zhang, Laurence K. Thompson, John N. Bridson, and Monica BubenikCite this: Inorg. Chem. 1995, 34, 23, 5870–5877Publication Date (Print):November 1, 1995Publication History Published online1 May 2002Published inissue 1 November 1995https://pubs.acs.org/doi/10.1021/ic00127a027https://doi.org/10.1021/ic00127a027research-articleACS PublicationsRequest reuse permissionsArticle Views181Altmetric-Citations25LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (3)»Supporting Information Supporting Information Get e-Alerts
Mutagenesis of a Proton Linkage Pathway in Escherichia coli Manganese Superoxide Dismutase (1997)

Mutagenesis of Escherichia coli manganese superoxide dismutase (MnSD) demonstrates involvement of the strictly conserved gateway tyrosine (Y34) in exogenous ligand interactions. Conservative replacement of this residue by phenylalanine (Y34F) affects the pH sensitivity of the active-site metal ion and perturbs ligand binding, stabilizing a temperature-independent six-coordinate azide complex. Mutant complexes characterized by optical and electron paramagnetic resonance (EPR) spectroscopy are distinct from the corresponding wild-type forms and the anion affinities are altered, consistent with modified basicity of the metal ligands. However, dismutase activity is only slightly reduced by mutagenesis, implying that tyrosine-34 is not essential for catalysis and may function indirectly as a proton donor for turnover, coupled to a protonation cycle of the metal ligands. In vivo substitution of Fe for Mn in the MnSD wild-type and mutant proteins leads to increased affinity for azide and altered active-site properties, shifting the pH-dependent transition of the active site from 9.7 (Mn) to 6.4 (Fe) for wt enzyme. This pH-coupled transition shifts once more to a higher effective pKa for Y34F Fe2-MnSD, allowing the mutant to be catalytically active well into the physiological pH range and decreasing the metal selectivity of the enzyme. Peroxide sensitivities of the Fe complexes are distinct for the wild-type and mutant proteins, indicating a role for Y34 in peroxide interactions. These results provide evidence for a conserved peroxide-protonation linkage pathway in superoxide dismutases, analogous to the proton relay chains of peroxidases, and suggests that the selectivity of Mn and Fe superoxide dismutases is determined by proton coupling with metal ligands.
A scoliosis correction device based on memory metal (1997)

A new correction system for a dorsal surgical approach to the scoliotic spine has been developed, based on the specific properties of memory metal.
HUMAN ALBUMIN INFUSIONS AND HOMOLOGOUS SERUM JAUNDICE (1952)

It is the general impression of most observers who have had contact with large groups of patients given human albumin intravenously that homologous serum jaundice has not been seen following the use of this preparation. Experimental work by Gellis<sup>1a</sup>and his co-workers, who gave mixtures of albumin and known infected pooled plasma to human volunteers, seems to indicate that the heating for 10 hours at 60 C normally carried out in the process of albumin preparation is sufficient to inactivate the virus. In control studies using the same mixtures without heating, hepatitis was produced in three out of five volunteers, indicating that there is no antiviral activity in the albumin itself. Because of the unsolved problem of homologous serum jaundice following use of dried and even irradiated plasma and other blood derivatives, more study of patients receiving human albumin intravenously seems indicated. An effort was made to determine the
Cytotoxic activity of disulfide-stabilized recombinant immunotoxin RFB4(dsFv)-PE38 (BL22) toward fresh malignant cells from patients with B-cell leukemias. (2000)

Chemical conjugates of anti-CD22 monoclonal antibodies and toxins have been used to treat CD22+ hematological malignancies. A new anti-CD22 recombinant immunotoxin RFB4(dsFv)-PE38, composed of the Fv portion of the monoclonal antibody RFB4 fused to a truncated form of Pseudomonas exotoxin A, is being developed to target CD22+ tumor cells. To explore the potential clinical utility of this recombinant toxin in treating patients with B-cell malignancies, the fresh cells of patients were incubated ex vivo with RFB4(dsFv)-PE38. Specific cytotoxicity was demonstrated in the malignant cells of 25 of 28 patients with a variety of B-cell malignancies, including acute and chronic lymphocytic leukemias and large cell, mantle cell, and follicular lymphomas. The IC50S, the concentrations necessary for 50% inhibition of protein synthesis, were 3-10 ng/ml in five patients and 10-50 ng/ml in seven patients. Cytotoxicity correlated with cell death upon direct examination of the malignant cells. Significant cytotoxicity was observed with cells containing as few as 350 CD22 sites/cell. A more active derivative of RFB4(dsFv)-PE38, RFB4(dsFv)-PE38KDEL, was produced and was slightly to more than 10-fold more cytotoxic toward patient cells and about twice as toxic to mice. Thus, RFB4(dsFv)-PE38 was specifically cytotoxic toward malignant cells from patients with B-cell leukemias. These data support the testing of RFB4(dsFv)-PE38 in patients with CD22+ leukemias and lymphomas, which is presently under way.
Gene networks involved in drought stress response and tolerance (2006)

Plants respond to survive under water-deficit conditions via a series of physiological, cellular, and molecular processes culminating in stress tolerance. Many drought-inducible genes with various functions have been identified by molecular and genomic analyses in Arabidopsis, rice, and other plants, including a number of transcription factors that regulate stress-inducible gene expression. The products of stress-inducible genes function both in the initial stress response and in establishing plant stress tolerance. In this short review, recent progress resulting from analysis of gene expression during the drought-stress response in plants as well as in elucidating the functions of genes implicated in the stress response and/or stress tolerance are summarized. A description is also provided of how various genes involved in stress tolerance were applied in genetic engineering of dehydration stress tolerance in transgenic Arabidopsis plants.
Large-scale image categorization with explicit data embedding (2010)

Kernel machines rely on an implicit mapping of the data such that non-linear classification in the original space corresponds to linear classification in the new space. As kernel machines are difficult to scale to large training sets, it has been proposed to perform an explicit mapping of the data and to learn directly linear classifiers in the new space. In this paper, we consider the problem of learning image categorizers on large image sets (e.g. > 100k images) using bag-of-visual-words (BOV) image representations and Support Vector Machine classifiers. We experiment with three approaches to BOV embedding: 1) kernel PCA (kPCA), 2) a modified kPCA we propose for additive kernels and 3) random projections for shift-invariant kernels. We report experiments on 3 datasets: Cal-tech101, VOC07 and ImageNet. An important conclusion is that simply square-rooting BOV vectors - which corresponds to an exact mapping for the Bhattacharyya kernel - already leads to large improvements, often quite close to the best results obtained with additive kernels. Another conclusion is that, although it is possible to go beyond additive kernels, the embedding comes at a much higher cost.
Hybrid Organic-Inorganic Materials—In Search of Synergic Activity (2001)

This review surveys the work developed in the field of functional hybrid materials, especially those containing conducting organic polymers (COPs), in combination with a variety of inorganic species, from molecular to extended phases, including clusters and nano-sized inorganic particles. Depending on the dominating structural matrix, we distinguish and analyze organic–inorganic (OI) hybrids, nanocomposite materials, and inorganic–organic (IO) phases. These materials have been used in a wide variety of applications, including energy-storage applications, electrocatalysis, the harnessing of electrochromic and photoelectrochromic properties, application in display devices, photovoltaics, and novel energy-conversion systems, proton-pump electrodes, sensors, or chemiresistive detectors, which work as artificial “noses”.
Immunization with Native or Recombinant Streptococcus pneumoniae Neuraminidase Affords Protection in the Chinchilla Otitis Media Model (2004)

Streptococcus pneumoniae neuraminidase has been implicated as a virulence factor in the pathogenesis of pneumococcal otitis media. In this study, native neuraminidase was partially purified from cultures of S. pneumoniae by serial chromatography with DEAE-Sepharose and Sephacryl S-200. Recombinant neuraminidase, a 3,038-bp fragment of the neuraminidase A (nanA) gene, was cloned into the pET-28b vector and then expressed at high levels in Escherichia coli. Chinchillas were immunized subcutaneously with either the gel-purified native or recombinant neuraminidase, and all responded with elevated titers of antineuraminidase antibody in serum. Immunization with neuraminidase resulted in a significant reduction in nasopharyngeal colonization as well as in the incidence of otitis media with effusion. These data demonstrate for the first time that neuraminidase affords protection against S. pneumoniae nasopharyngeal colonization and experimental otitis media.
Secreted proNGF is a pathophysiological death-inducing ligand after adult CNS injury (2004)

The unprocessed precursor of the neurotrophin nerve growth factor (NGF), proNGF, has been suggested to be a death-inducing ligand for the neurotrophin receptor p75. Whether proNGF is a true pathophysiological ligand that is secreted, binds p75, and activates cell death in vivo, however, has remained unknown. Here, we report that after brain injury, proNGF was induced and secreted in an active form capable of triggering apoptosis in culture. We further demonstrate that proNGF binds p75 in vivo and that disruption of this binding results in complete rescue of injured adult corticospinal neurons. These data together suggest that proNGF binding to p75 is responsible for the death of adult corticospinal neurons after lesion, and they help to establish proNGF as the pathophysiological ligand that activates the cell-death program by means of p75 after brain injury. Interference in the binding of proNGF to p75 may provide a therapeutic approach for the treatment of disorders involving neuronal loss.
A Prospective Study on TT Virus Infection in Transfusion-Dependent Patients With β-Thalassemia (1999)

A novel DNA virus designated TT virus (TTV) has been reported to be involved in the development of posttransfusion non-A-C hepatitis. We evaluated the frequency and natural course of TTV infection in a cohort of transfusion-dependent thalassemic patients in a 3-year follow-up study. Ninety-three serum hepatitis C virus (HCV) antibody-negative patients (median age of 8 years; range, 0 to 25) from eight centers were studied. Of them, 34 (37%) had an abnormal alanine-aminotransferase (ALT) baseline pattern, and the other 12 (13%) showed ALT flare-ups during the follow-up. TTV DNA in patient sera collected at the time of enrollment and at the end of follow-up was determined by polymerase chain reaction (PCR). In parallel, serum samples from 100 healthy blood donors were also tested. At baseline, 87 patient sera (93.5%) tested positive for the TTV DNA. Of these TTV DNA-positive patients, 84 (96.5%) remained viremic at the end of the study period. Of the 6 TTV DNA-negative patients, 3 acquired TTV infection during follow-up. However, no definite relation was observed between the results of TTV DNA determination and ALT patterns. TTV viremia was also detectable in 22% of blood donors. In conclusion, TTV infection is frequent and persistent among Italian transfusion-dependent patients. The high rate of viremia observed in healthy donors indicates that the parenteral route is not the only mode of TTV spread.
Bactericidal Monoclonal Antibodies That Define Unique Meningococcal B Polysaccharide Epitopes That Do Not Cross-React with Human Polysialic Acid (1998)

The poor immunogenicity of the Neisseria meningitidis group B polysaccharide capsule, a homopolymer of alpha(2-->8) sialic acid, has been attributed to immunologic tolerance induced by prenatal exposure to host polysialyated glycoproteins. Substitution of N-propionyl (N-Pr) for N-acetyl groups on the meningococcal B polysaccharide, and conjugation of the resulting polysaccharide to a protein carrier, have been reported to yield a conjugate vaccine that elicits protective Abs with minimal autoantibody activity. To characterize the protective epitopes on the derivatized polysaccharide, we isolated 30 anti-N-Pr meningococcal B polysaccharide mAbs. These Abs were heterogeneous with respect to complement-mediated bactericidal activity, fine antigenic specificity, and autoantibody activity as defined by binding to the neuroblastoma cell line, CHP-134, which expresses long-chain a(2-->8)-linked polysialic acid. Eighteen of the Abs could activate complement-mediated bacteriolysis. Seven of these 18 Abs cross-reacted with N-acetyl meningococcal B polysaccharide by ELISA and had strong autoantibody activity. Thus, N-Pr meningococcal B polysaccharide conjugate vaccine has the potential to elicit autoantibodies. However, 7 of the 18 bactericidal mAbs had no detectable autoantibody activity. These Abs may be useful for the identification of molecular mimetics capable of eliciting protective Abs specific to the bacteria, without the risk of evoking autoimmune disease.
Synthesis of Peptide Dendrimer (1994)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSynthesis of Peptide DendrimerChang Rao and James P. TamCite this: J. Am. Chem. Soc. 1994, 116, 15, 6975–6976Publication Date (Print):July 1, 1994Publication History Published online1 May 2002Published inissue 1 July 1994https://pubs.acs.org/doi/10.1021/ja00094a078https://doi.org/10.1021/ja00094a078research-articleACS PublicationsRequest reuse permissionsArticle Views1040Altmetric-Citations131LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (2)»Supporting Information Supporting Information Get e-Alerts
A cortical pooling model of spatial summation for perimetric stimuli (2006)

Contemporary models of perimetric sensitivity assume probability summation of retinal ganglion cell sensitivities, ignoring cortical processing. To assess the role of cortical processing in perimetric spatial summation, we used a common form of multiple-mechanism spatial vision model in which the stimulus is sampled by receptive fields analogous to those of simple cells in primary visual cortex. Psychophysical threshold was computed by probability summation across the receptive fields. When the receptive fields were nonoriented (like ganglion cells), the spatial summation function had a large nonmonotonic transitional region that was inconsistent with perimetric spatial summation data. When the receptive fields were orientation tuned (like cortical cells), the model was able to give good fits to perimetric spatial summation data. The predictions of the model were evaluated with a masking study, in which noise masks either enlarged the critical area or changed the shape of the spatial summation functions. We conclude that cortical pooling by multiple spatial mechanisms can account for perimetric spatial summation, whereas probability summation across ganglion cells cannot.
Identification of a Saccharomyces Gene,LCB3, Necessary for Incorporation of Exogenous Long Chain Bases into Sphingolipids (1997)

To identify genes necessary for sphingolipid synthesis in Saccharomyces cerevisiae we developed a procedure to enrich for mutants unable to incorporate exogenous long chain base into sphingolipids. We show here that a mutant strain, AG84-3, isolated by using the enrichment procedure, makes sphingolipids from endogenously synthesized but not from exogenously supplied long chain base. A gene termed LCB3 (YJL134W, GenBank designation X87371x21), which complements the long chain base utilization defect of strain AG84-3, was isolated from a genomic DNA library. The gene is predicted to encode a protein with multiple membrane-spanning domains and a COOH-terminal glycosylphosphatidylinositiol cleavage/attachment site. Deletion of the lcb3 gene in a wild type genetic background reduces the rate of exogenous long chain base incorporation into sphingolipids and makes the host strain more resistant to growth inhibition by long chain bases. Only one protein in current data bases, the S. cerevisiae open-reading frame YKR053C, whose function is unknown, shows homology to the Lcb3 protein. The two proteins are not, however, functional homologs because deletion of the YKR053C open reading frame does not impair long chain base utilization or enhance resistance of cells to growth inhibition by long chain bases. Based upon these data we hypothesize that the Lcb3 protein is a plasma membrane transporter capable of transporting sphingoid long chain bases into cells. It is the first candidate for such a transporter and the first member of what appears to be a new class of membrane-bound proteins.
Density-dependent recognition of cell surface GM3 by a certain anti-melanoma antibody, and GM3 lactone as a possible immunogen: requirements for tumor-associated antigen and immunogen. (1987)

A mouse monoclonal antibody M2590, previously established after immunization of mice (C57BL/6) with syngeneic melanoma B16 cells and showing preferential reactivity with various types of melanoma over other tumor and normal cells or tissues, was shown to be directed to GM3 ganglioside. Since GM3 is widely distributed in essentially all types of animal cells, there is a conflict with the concept of a tumor-associated antigen and immunogen. Studies on the reactivity of M2590 antibody with various cells having different GM3 density at their cell surface, including cells treated with sialidase, liposomes, and solid-phase lipid layer containing different GM3 concentrations, have indicated that 1) reactivity of the antibody M2590 depends greatly on the density of GM3 exposed at the cell surface, on liposomes, or on solid phase; and 2) there is a threshold density that is recognized by the antibody in all-or-none fashion. In addition, the antibody M2590 reacts not only with GM3 but also with GM3 lactone, and the binding affinity of the antibody to GM3 lactone is strikingly higher than to GM3; however, the antibody does not react with GM3 ethyl ester. GM3 lactone was detected in melanoma as 3H-labeled GM3 gangliosidol after melanoma cells were directly treated with NaB[3H]4. A comparative immunization of BALB/c mice with GM3 and GM3 lactone showed that GM3 lactone is a much stronger immunogen than GM3, although the antibody elicited reacts with both GM3 and its lactone. Thus, the real immunogen could be GM3 lactone, although it is a minor membrane component.