gebhart/patrepeval huggingface dataset:
Estimating Worldwide Current Antibiotic Usage: Report of Task Force 1 (1987)

Estimates of antibiotic availability from a number of countries throughout the world were developed as an indicator of potential patterns of human antibiotic use. Data were organized by major classes of antibiotics and by some individual products and converted to units of weight and defined daily dosages per 1,000 population per day. Estimates were based either on sales or on production and trade data, including global production of penicillins, cephalosporins, tetracyclines, and erythromycins. The data obtained showed that antibiotic availability can vary widely among countries as well as from year to year in the same country.
Angiotensin II revisited: new roles in inflammation, immunology and aging (2010)

That the renin-angiotensin system (RAS) is involved in regulation of blood pressure, vasoconstriction, sodium intake and potassium excretion is well established. Studies in the last few years have however documented new roles for this molecule as a pro-inflammatory molecule and more recently as a possible pro-fibrotic agent that contributes to progressive deterioration of organ function in disease. Binding of Ang II to its receptors (in particular AT(1)) mediates intracellular free radical generation that contributes to tissue damage by promoting mitochondrial dysfunction. Blocking Ang II signalling protects against neurodegenerative processes and promotes longevity in rodents. Altogether these findings open the unanticipated perspective for exploring Ang II signalling in therapeutic interventions in inflammatory diseases and aging-related tissue injury. This review extends from the discovery of Ang II and its implications in renal and cardiovascular physiology to cover the roles of the system in inflammation, tissue injury, autoimmunity, oxidative stress and aging.
Biotechnological Production of Spider‐Silk Proteins Enables New Applications (2007)

The outstanding mechanical properties of spider silks have motivated many researchers to establish biotechnological production techniques which are necessary to provide sufficient amounts of silk proteins for industrial applications. Based on recent developments in genetic engineering, two strategies for the recombinant production of spider-silk proteins have been established which are discussed in detail. Further, protein-design strategies are described, enabling the combination of silk properties with additional biological, chemical, or technical features. We highlight the potential of engineered and recombinantly-produced spider-silk proteins to provide the basis for a new generation of biomaterials.
Redefining relativity: quantitative PCR at low template concentrations for industrial and environmental microbiology (1998)

The application of PCR techniques in environmental and industrial microbiology is complicated by innumerable organic and inorganic contaminants and enzyme inhibitors that copurify with nucleic acids. These complications are compounded in quantitative PCR (qPCR) methods, which are predicated upon subtle yet significant assumptions of amplification efficiency and the representativeness of the sample with respect to the environment or industrial process from which it was obtained. In low-biomass and/or low-template situations, additional concerns related to target gene spatial heterogeneity in the sample, differential DNA (or RNA) extraction efficiency, molecular sampling error, attenuation of PCR inhibitors and amplification bias can quickly undermine fundamental assumptions of conventional competitive PCR (cPCR) and most-probable-number PCR (MPN-PCR) formats. A critical evaluation of cPCR and MPN-PCR assumptions is therefore presented within the context of environmental microbiology and low-template enumerations. Fundamental conclusions from the analysis of qPCR assumptions are that: (a) environmental qPCR enumerations are invariably estimates, not absolute enumerations, which are relative to the PCR standard; (b) traditional cPCR assays are ill-suited for environmental applications, especially in low-biomass situations; and (c) both cPCR and traditional MPN-PCR practices insufficiently account for field-scale, process-level or experimental variations that arise and become amplified in PCR enumerations. Thus, sample representativeness and errors related to sample replication are frequently more important than errors related to the qPCR assay itself. Based upon this critique of qPCR assumptions, an alternate qPCR method for routine environmental application is described which is based upon replicative limiting dilution analysis and the pragmatic tradeoffs between analytical sensitivity and practical utility.
Congenital Adrenal Hyperplasia Due to Steroid 21-Hydroxylase Deficiency: An Endocrine Society Clinical Practice Guideline (2010)

The writing committee presents updated best practice guidelines for the clinical management of congenital adrenal hyperplasia based on published evidence and expert opinion with added considerations for patient safety, quality of life, cost, and utilization.
Characterization of a human basophil-like cell promoting activity. (1988)

Biologic and biochemical properties of a human basophil-like cell promoting activity (BaPA), which induces growth of metachromatically staining cells from normal bone marrow cells in a liquid culture system have been examined. In order to study this T cell factor, an assay was developed based on the intracellular histamine content of the cultured human bone marrow cells. Many lymphokines, including granulocyte-macrophage colony-stimulating factor, granulocyte colony-stimulating factor, interleukin 1 alpha and 1 beta, interleukin 2, and interferon-alpha and gamma, did not exhibit any significant activity in the assay. By employing this assay, BaPA was purified approximately 500-fold from lectin-stimulated spleen cell-conditioned medium. BaPA has a molecular weight of 23,000 on high performance liquid chromatography gel filtration and displays isoelectric points between 5.8 and 7.3. It is heat stable up to 80 degrees C for 30 min and resistant to 6 M guanidine hydrochloride, whereas it is rather sensitive to sulfhydryl reagents. BaPA has no stimulating activity on mouse bone marrow cells.
People recognition by mobile robots (2004)

This paper addresses the problem of detecting and identifying persons with a mobile robot, by sensory fusion of thermal and colour vision information. In the proposed system, people are first detected with a thermal camera, using image analysis techniques to segment the persons in the thermal images. This information is then used to segment the corresponding regions of the colour images, using an affine transformation to solve the image correspondence between the two cameras. After segmentation, the region of the image containing a person is further divided into regions corresponding to the person's head, torso and legs. Temperature and colour features are then extracted from each region for input to a pattern recognition system. Three alternative classfication methods were investigated in experiments with a moving mobile robot and moving persons in an office environment. The best identification performance was obtained with a dynamic recognition method based on a Bayes classifier, which takes into account evidence accumulated in a sequence of images.
A novel mixed signal programmable device with on-chip microprocessor (2002)

In this paper we present a novel field programmable mixed-signal integrated device consisting of a Field Programmable Gate Array (FPGA), a set of programmable and interconnectable analog cells, and a microprocessor core. This processor can run general purpose user programs, handle the dynamic reconfiguration of the programmable blocks and probe in real time internal digital and analog signals. The device is especially suitable for development and fast prototyping of mixed signal integrated applications.
Machine-interpretable dataset and service descriptions for heterogeneous data access and retrieval (2015)

The rdf data model allows the description of domain-level knowledge that is understandable by both humans and machines. rdf data can be derived from different source formats and diverse access points, ranging from databases or files in csv format to data retrieved from Web apis in json, Web Services in xml or any other speciality formats. To this end, machine-interpretable mapping languages, such as rml, were introduced to uniformly define how data in multiple heterogeneous sources is mapped to the rdf data model, independently of their original format. However, the way in which this data is accessed and retrieved still remains hard-coded, as corresponding descriptions are often not available or not taken into account. In this paper, we introduce an approach that takes advantage of widely-accepted vocabularies, originally used to advertise services or datasets, such as Hydra or dcat, to define how to access Web-based or other data sources. Consequently, the generation of rdf representations is facilitated and further automated, while the machine-interpretable descriptions of the connectivity to the original data remain independent and interoperable, offering a granular solution for accessing and mapping data.
Animal models of headache: from bedside to bench and back to bedside (2010)

In recent years bench-based studies have greatly enhanced our understanding of headache pathophysiology, while facilitating the development of new headache medicines. At present, established animal models of headache utilize activation of pain-producing cranial structures, which for a complex syndrome, such as migraine, leaves many dimensions of the syndrome unstudied. The focus on modeling the central nociceptive mechanisms and the complexity of sensory phenomena that accompany migraine may offer new approaches for the development of new therapeutics. Given the complexity of the primary headaches, multiple approaches and techniques need to be employed. As an example, recently a model for trigeminal autonomic cephalalgias has been tested successfully, while by contrast, a satisfactory model of tension-type headache has been elusive. Moreover, although useful in many regards, migraine models are yet to provide a more complete picture of the disorder.
Oxidative stress in sepsis: a redox redux (2006)

Sepsis and sepsis syndrome are leading causes of mortality throughout the world. It is widely held that sepsis represents a dysregulated innate immune response to an offending pathogen. This immune response is often initiated via microbial products signaling through TLRs expressed on host immune cells. There is increasing evidence that this innate response can be dramatically influenced by the cellular redox state, and thus a better understanding of oxidative regulation of innate immunity could lead to new treatments for sepsis. In this issue of the JCI, Thimmulappa et al. show that nuclear factor-erythroid 2-related factor 2 (Nrf2), a member of the "cap'n'collar" family of basic region-leucine zipper transcription factors, which has previously been shown to be involved in the transcription of antioxidant gene expression in response to xenobiotic stress, is also a critical regulator of cellular oxidative stress in sepsis (see the related article beginning on page 984).
Rational Design of “Turn‐On” Allosteric DNAzyme Catalytic Beacons for Aqueous Mercury Ions with Ultrahigh Sensitivity and Selectivity (2007)

The mercury is rising: A DNAzyme with several thymine residues located close to the catalytic site is rendered inactive. However, thymine–Hg2+–thymine interactions transform the DNAzyme into an active enzyme. When fluorophore/quencher pairs are attached, the DNAzyme can be converted into a highly sensitive and selective mercury sensor with a detection limit of 2.4 nM and a greater than 100 000-fold selectivity over other metal ions. Supporting information for this article is available on the WWW under http://www.wiley-vch.de/contents/jc_2002/2007/z702006_s.pdf or from the author. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
SirT1 enhances survival of human osteoarthritic chondrocytes by repressing protein tyrosine phosphatase 1B and activating the insulin‐like growth factor receptor pathway (2010)

For the first time, it has been demonstrated that SirT1 is a mediator of human chondrocyte survival via down-regulation of PTP1B, a potent proapoptotic protein that is elevated in OA cartilage.
Metabolism of Aromatic Amino Acid in Microorganisms (1967)

Certain strains of Rhodotorula were found capable of utilizing L-phenylalanine as a sole carbon and nitrogen source and of accumulating ether-soluble metabolite in the cultured broth. The metabolite was isolated and identified as trans-cinnamic acid. The nonoxidative deamination of phenylalanine to trans-cinnamic acid was catalyzed by dried cells, acetone-dried cells or intact cells with surface active agents. The distribution of phenylalanine ammonia-lyase activity in yeasts was investigated. It was found that the enzyme activity specifically occurred in Rhodotorula and that the formation of enzyme was enhanced by culturing on the medium supplemented with phenylalanine.
p185, a product of the neu proto-oncogene, is a receptorlike protein associated with tyrosine kinase activity. (1986)

The neu oncogene was originally identified in cell lines derived from rat neuroectodermal tumors. neu is related to but distinct from the c-erbB gene, which encodes the epidermal growth factor (EGF) receptor. neu encodes a protein, designated p185, that is serologically related to the EGF receptor. Identification of the normal homolog of p185 encoded by the neu proto-oncogene enabled us to compare the product of the neu proto-oncogene with the mutated version specified by the neu oncogene and with the EGF receptor. The normal form of p185 was structurally similar to its transforming counterpart, indicating that activation of the neu oncogene did not cause major structural alterations in the gene product. Both normal and transforming forms of p185 were associated with tyrosine kinase activity, supporting the idea that normal p185 functions as a growth factor receptor. p185 differed both structurally and functionally from the EGF receptor. p185 and the EGF receptor had distinct electrophoretic mobilities when synthesized under normal culture conditions or in the presence of tunicamycin. EGF did not stimulate increased turnover of p185 and did not bind quantitatively to p185. A number of other growth factors failed to stimulate degradation of p185 or tyrosine phosphorylation of p185 and are therefore unlikely to be ligands for p185.
Coronary pacing during percutaneous transluminal coronary angioplasty. (1985)

To avoid venous puncture, a new concept for standby cardiac pacing during percutaneous transluminal coronary angioplasty (PTCA) and diagnostic cardiac catheterization was developed. It uses an arterial guidewire as a unipolar pacing electrode with the second electrode attached to the skin. The system was tested in 25 coronary arteries of 22 patients undergoing PTCA and in the left ventricles of 10 patients undergoing diagnostic cardiac catheterization. Coronary pacing via the guidewire used for directing the balloon catheter was possible in all patients and in 24 of the 25 coronary arteries attempted. Maximum duration of pacing was 8 min. Threshold currents ranged from 1 to 15 mA (mean 5.7). Left ventricular pacing via the same wires or standard wires used for introduction of diagnostic or guiding catheters was possible in all patients and was maintained for up to 10 min. Threshold currents ranged from 1 to 7 mA (mean 3.9). Neither method for pacing produced adverse effects during these short applications. The setup for coronary pacing also allowed recording of an intracoronary electrocardiogram during PTCA. The presented system provides backup for the rare event of sustained bradycardia during PTCA or diagnostic cardiac catheterization. If applied cautiously, it may safely and reliably replace the standby of a conventional transvenous pacing catheter.
Simultaneous, Phenotypic Knockout of VEGF-R2 and Tie-2 with an Intradiabody Enhances Antiangiogenic Effects In Vivo (2006)

We demonstrate for the first time that simultaneous inhibition of the VEGF and the Tie-2 receptor pathways result in additive antiangiogenic effects in vitro and in vivo as compared to single VEGF receptor pathway blockade, strengthening the potential of simultaneous targeting of multiple pathways as a therapeutic strategy.
Chip-Based Quantitative Capillary Electrophoresis/Mass Spectrometry Determination of Drugs in Human Plasma (2001)

A chip-based capillary electrophoresis/mass spectrometry (CE/MS) system is described for the on-chip separation and coupled electrospray detection of selected small drug molecule compounds. These studies include the quantitative determination of carnitine and acetylcarnitine in analytical standard solutions as well as imipramine and desipramine in fortified human plasma samples. A clinical human plasma sample was also analyzed following the normal administration of desipramine to a volunteer, and the parent drug was determined using the described chipbased CE/MS technique. In each instance, stable isotope-incorporated internal standards were used. The chip-based CE system was microfabricated from glass and coupled to a micro ion spray device constructed in-house. The atmospheric pressure ionization system employed in this work was a PE Sciex API III tandem triple quadrupole system operated in the selected ion monitoring (SIM) mode. The results from the work reported here demonstrate the feasibility for carrying out rapid (30 s) chipbased quantitative CE/MS determinations of samples containing small-molecule compounds. Using SIM CE/ MS techniques, the described API III quadrupole system provided acceptable ion current electropherograms from subpicomole levels of the targeted compounds loaded onto the chip. The corresponding electropherograms for the standard solution of carnitines at the 1-500 microg/mL level were obtained via SIM CE/MS techniques (R2 > 0.99). In addition, analyses of fortified samples of imipramine desipramine were measured relative to their corresponding d3 internal standards to obtain calibration curves ranging from 5 to 500 microg/mL in human plasma (R2 > 0.99). The intra-assay precision ranged from 4.1 to 7.3% RSD. The intra-assay accuracy ranged from 94.0 to 104%. These results demonstrate the feasibility for on-chip CE separation and electrospray mass spectrometric determination in applications for bioanalytical measurements for these important compounds in synthetic mixtures and human plasma extracts.
Plasma Vascular Endothelial Growth Factor in Sleep Apnea Syndrome: Effects of Nasal Continuous Positive Air Pressure Treatment (2002)

Sleep apnea syndrome is associated with recurrent episodic hypoxia during sleep, which has been implicated in the development of cardiovascular morbidity. Hypoxia is the major stimulus of vascular endothelial growth factor (VEGF), which is a potent angiogenic cytokine. In the present article we describe the results of three experiments in which plasma concentrations of VEGF were measured in patients with sleep apnea. In Experiment 1, apnea-hypopnea index was found to be a significant independent predictor of morning VEGF concentrations in 85 male subjects investigated in the sleep laboratory, of whom 47 had an apnea-hypopnea index greater than 20. In Experiment 2, VEGF concentrations measured hourly during the sleep period were found to be significantly higher in a group of five sleep apnea patients compared with six age-similar snorers and six normal young adults (129.1 +/- 43.4 versus 74.6 +/- 11.5 and 32.5 +/- 12.8 pg/ml, respectively [p < 0.007]). In Experiment 3, VEGF concentrations were compared in patients with sleep apnea before and 1 year after nasal continuous positive airway pressure treatment. A significant decrease in VEGF concentrations was found only in patients in whom nocturnal hypoxia improved after treatment (57.1 +/- 62.5 versus 39.6 +/- 46.9 pg/ml, p < 0.01). There was no comparable improvement in patients who did not accept treatment (53.9 +/- 23.6 versus 54.0 +/- 21.5 pg/ml, ns). These results raise the possibility that VEGF may contribute to the long-term adaptation of sleep apnea syndrome to recurrent nocturnal hypoxia.
No Longer Intending: The Relationship Between Relinquished Fertility Intentions and Distress (2006)

We use data from both waves of the National Survey of Families and Households to assess whether relinquishing a serious intention to have (more) children leads to greater increases in depressive symptoms than continuing confidence in childbearing intentions. Our sample includes 2,200 individuals of childbearing age, men and women, all parities, and all marital statuses. Change score analysis shows that individuals who relinquished a serious intent to have children had elevated distress at Time 2 and that the association is conditioned by gender, health, and education. We find that fertility potential can be important to psychosocial well‐being and that closing the door on future fertility, especially for women, those in ill health, and the better educated, leads to increased distress.
Facile Preparation of Mono‐, Di‐ and Mixed‐Carboxylato Platinum(IV) Complexes for Versatile Anticancer Prodrug Design (2012)

Facile strategies were developed for the versatile functionalization of platinum(IV) axial sites, allowing for easy accessibility to unsymmetric mono- and mixed-carboxylato, as well as symmetric di-substituted platinum(IV) complexes. The first method involves the direct oxidation and carboxylation of the platinum(II) center using an appropriate peroxide and the carboxylate of choice to firstly yield a monocarboxylato monohydroxido platinum(IV) complex. This platinum(IV) intermediate can undergo further carboxylation to give rise to a mixed-carboxylato platinum(IV) complex. The second method involves the activation of the carboxylate of choice by a common carbodiimide coupling reagent, and its reaction with a dihydroxido platinum(IV) precursor to give the monocarboxylato platinum(IV) complex. Uronium salts can be employed to promote efficient dicarboxylation of the dihydroxido platinum(IV) precursor. Lastly, an axial azide pendant group was demonstrated to be suitable for orthogonal "click" conjugation reactions.