gebhart/patrepeval huggingface dataset:
LvsA, a Protein Related to the Mouse Beige Protein, Is Required for Cytokinesis inDictyostelium (1999)

We isolated a Dictyostelium cytokinesis mutant with a defect in a novel locus called large volume sphere A (lvsA). lvsA mutants exhibit an unusual phenotype when attempting to undergo cytokinesis in suspension culture. Early in cytokinesis, they initiate furrow formation with concomitant myosin II localization at the cleavage furrow. However, the furrow is later disrupted by a bulge that forms in the middle of the cell. This bulge is bounded by furrows on both sides, which are often enriched in myosin II. The bulge can increase and decrease in size multiple times as the cell attempts to divide. Interestingly, this phenotype is similar to the cytokinesis failure of Dictyostelium clathrin heavy-chain mutants. Furthermore, both cell lines cap ConA receptors but form only a C-shaped loose cap. Unlike clathrin mutants, lvsA mutants are not defective in endocytosis or development. The LvsA protein shares several domains in common with the molecules beige and Chediak-Higashi syndrome proteins that are important for lysosomal membrane traffic. Thus, on the basis of the sequence analysis of the LvsA protein and the phenotype of the lvsA mutants, we postulate that LvsA plays an important role in a membrane-processing pathway that is essential for cytokinesis.
The design of integrated switches and phase shifters (1999)

Integrated analogue switches can easily be designed using any Field Effect Transistor (FET) based process [1]. The challenges in switch design tend to come in extending the upper operating frequency and/or increasing the power handling capability. The first part of this paper describes the operation of FETs as switches and presents design techniques for realising integrated RF and microwave switches. Consideration is also given to techniques for improving the power handling capability of switch designs. Phase shifting circuits allow control of the insertion phase of a network. They find applications in electronic beam-forming, channel matching networks and measurement systems. The second part of this paper details phase shifting techniques suitable for integrated realisations. Analogue and digitally controlled techniques are included and examples of phase shifter designs are
Association study of SHANK3 gene polymorphisms with autism in Chinese Han population (2009)

We suggest that SHANK3 might not represent a major susceptibility gene for autism in Chinese Han population.
Synaptic vesicle glycoprotein 2A (SV2A) regulates kindling epileptogenesis via GABAergic neurotransmission (2016)

Synaptic vesicle glycoprotein 2A (SV2A) is a prototype synaptic vesicle protein regulating action potential-dependent neurotransmitters release. SV2A also serves as a specific binding site for certain antiepileptics and is implicated in the treatment of epilepsy. Here, to elucidate the role of SV2A in modulating epileptogenesis, we generated a novel rat model (Sv2a(L174Q) rat) carrying a Sv2a-targeted missense mutation (L174Q) and analyzed its susceptibilities to kindling development. Although animals homozygous for the Sv2a(L174Q) mutation exhibited normal appearance and development, they are susceptible to pentylenetetrazole (PTZ) seizures. In addition, development of kindling associated with repeated PTZ treatments or focal stimulation of the amygdala was markedly facilitated by the Sv2a(L174Q) mutation. Neurochemical studies revealed that the Sv2a(L174Q) mutation specifically reduced depolarization-induced GABA, but not glutamate, release in the hippocampus without affecting basal release or the SV2A expression level in GABAergic neurons. In addition, the Sv2a(L174Q) mutation selectively reduced the synaptotagmin1 (Syt1) level among the exocytosis-related proteins examined. The present results demonstrate that dysfunction of SV2A due to the Sv2a(L174Q) mutation impairs the synaptic GABA release by reducing the Syt1 level and facilitates the kindling development, illustrating the crucial role of SV2A-GABA system in modulating kindling epileptogenesis.
The composition of coffee oil and its component fatty acids (1953)

Summary A specimen of coffee oil has been examined with the objective of determining its composition in the light of possible uses of the oil which is recoverable as a byproduct in the soluble coffee industry. The oil, as obtained by extraction of the coffee grounds with solvent, contains over 5% of unique unsaponifiable material which, without preliminary removal, makes the oil unsuitable for many purposes. It has been shown that the unsaponifiable and glyceridic components can be separated by molecular distillation. A specimen of the methyl esters of the fatty acids of the oil was examined by the ester distillation fractional crystallization techniques. The composition of the component fatty acids has been calculated. The oil contains 46% of linoleic acid. Saturated and unsaturated acids of the C 20 , C 22 , and C 24 series are present in coffee oil in small amounts.
Performance Analysis of a Built-In Planar Inverted&lt;tex&gt;F&lt;/tex&gt;Antenna for 800 MHz Band Portable Radio Units (1987)

The pattern averaging gain (PAG) method to estimate the average gain of mobile antennas in a multipath propagation environment is proposed. By using this method and a wire-grid model, the radiation characteristics of the planar inverted <tex xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">F</tex> antenna (PIFA) mounted on a portable radio case is analyzed. In particular, the variation of the antenna gain with the radio case dimensions and inclination angle of the radio case during operation is clarified. Also, the effect on antenna patterns of the operator holding the portable radio is experimentally investigated. Based on this analysis, the antenna configuration with the PIFA element mounted on the lateral side of the radio case is found to be most suitable for portable radio units. In addition, an appropriate selection of the radio case dimensions is found to result in further improvements in the antenna bandwidth.
DDRO: A novel performance monitoring methodology based on design-dependent ring oscillators (2012)

As CMOS technology scales, circuit performance becomes more sensitive to manufacturing and environmental variations. Hence, there is a need to measure or monitor circuit performance during manufacturing and at runtime. Since each circuit may have different sensitivities to process variations, previous works have focused on synthesis of circuit performance monitors that are specific to a given design. In this work, we study the potential benefit of having multiple design-dependent monitors. We develop a systematic approach to the synthesis of multiple design-dependent monitors, as well as a corresponding delay estimation method. Our approach synthesizes design-dependent ring oscillators (DDROs) using standard library gates. This has the advantage of quick design turnaround time and reduced schedule impact, because the DDRO implementation can leverage automation in conventional implementation flows. Our delay estimation method seeks to minimize the number of parameters as well as computing resources (i.e., to limit information storage and exchange) used in delay estimation based on monitoring results. Experiments show that our delay estimation method using multiple DDROs reduces overestimation (timing margin) by up to 25% compared to use of a single DDRO.
Antibacterial Activity and Mechanism of Action of the Silver Ion in Staphylococcus aureus and Escherichia coli (2008)

The antibacterial effect and mechanism of action of a silver ion solution that was electrically generated were investigated for Staphylococcus aureus and Escherichia coli by analyzing the growth, morphology, and ultrastructure of the bacterial cells following treatment with the silver ion solution. Bacteria were exposed to the silver ion solution for various lengths of time, and the antibacterial effect of the solution was tested using the conventional plate count method and flow cytometric (FC) analysis. Reductions of more than 5 log(10) CFU/ml of both S. aureus and E. coli bacteria were confirmed after 90 min of treatment with the silver ion solution. Significant reduction of S. aureus and E. coli cells was also observed by FC analysis; however, the reduction rate determined by FC analysis was less than that determined by the conventional plate count method. These differences may be attributed to the presence of bacteria in an active but nonculturable (ABNC) state after treatment with the silver ion solution. Transmission electron microscopy showed considerable changes in the bacterial cell membranes upon silver ion treatment, which might be the cause or consequence of cell death. In conclusion, the results of the present study suggest that silver ions may cause S. aureus and E. coli bacteria to reach an ABNC state and eventually die.
A Salmonella typhimurium virulence gene linked to flg (1989)

Isogenic pairs of strains of Salmonella typhimurium which differed only in whether or not they were flagellate were found to be equally virulent in C57BL/6J mice infected orally, intravenously, or intraperitoneally. Therefore, we investigated the genetic basis for our previous observation that in this mouse model, nonflagellate delta flagABCDE25 strains were reduced in virulence compared with isogenic wild-type flagellate strains. The recombinant plasmid pMH6, which contains several flg+ genes and a segment of the S. typhimurium chromosome adjacent to the flg genes, was introduced into a delta flgABCDE25 mutant. This restored virulence in mice challenged intraperitoneally, which suggested that a virulence gene occurs adjacent to the flg genes. When plasmid pMH64, which lacks the chromosomal segment adjacent to the flg genes, was introduced into the same delta flgABCDE25 mutant, virulence was not restored. In contrast, the introduction of pMH71, a plasmid which retains the chromosomal segment adjacent to the flg genes, restored virulence. We concluded that a hitherto unknown virulence gene, which we have named mviS, occurs adjacent to the flg genes and that its absence in delta flgABCDE25 mutants, rather than the nonflagellate phenotype of the delta flgABCDE25 mutants, caused the previously reported attenuation of such mutants.
Therapeutic efficacy of once‐daily oral administration of a Kunitz‐type protease inhibitor, bikunin, in a mouse model and in human cancer (2004)

Once-daily oral administration of bikunin was found to be safe in humans and exhibited signs of biologic activity.
Determination of Oxygen Permeability in Soft Contact Lenses Using a Polarographic Method:  Estimation of Relevant Physiological Parameters (2008)

This work reports the apparent oxygen transmissibility Dk/t)app of four silicone hydrogel (Si−Hy) contact lenses (CLs). A method is described that allows the estimation of the oxygen tension at the lens−cornea interface for closed- and open-eyelids situations combining the instrument oxygen transmissibility (IOT) and corneal parameters such as corneal thickness, corneal permeability, and oxygen flux across the cornea. From these results, the biological oxygen apparent transmissibility (BOAT), equivalent oxygen percentage (EOP), partial pressure, (ptc), of oxygen at the cornea−CL interface and oxygen flux, (jc), were also obtained. This method allows the evaluation of the physiological environment under the lens using the formulations described in previous studies. The oxygen performance of four Si−Hy materials was evaluated using a polarographic cell coupled to a permeometer. Measurements of the apparent transmissibility, (Dk/t)app, and permeability, Dk, were performed in stacks containing from 1 to n repeated lenses and, from the values obtained, the error involved in the measurements in single samples was estimated. It was found that the values of (Dk/t)app and Dk obtained following the two different procedures (stack method and measurement of single sample) were significantly different from the nominal values given by the manufacturer, particularly for some samples. However, the impact of these differences on the values of the other physiologically relevant parameters (BOAT, EOP, ptc, and jc) was not significant. Furthermore, these parameters were similar for the four lenses in spite of the different (Dk/t)app measured. The relationships of (Dk/t)app with the remaining physiological parameters were calculated and graphically represented for open and closed-eyelid conditions.
Cyclosporin C is the main antifungal compound produced by Acremonium luzulae (1997)

A strain of Acremonium luzulae (Fuckel) W. Gams was selected in screening new microorganisms for biological control of fruit postharvest diseases, especially gray and blue mold diseases on apples and strawberries. This strain manifests a very strong activity against a large number of phytopathogenic fungi. In this work, the product responsible for this antifungal activity was isolated from modified Sabouraud dextrose broth cultures of A. luzulae. It was purified to homogeneity by reverse-phase column chromatography. On the basis of UV, infrared, and 1H and 13C nuclear magnetic resonance spectra, mass spectral analysis, and the amino acid composition of the acid hydrolysates, the antibiotic was determined to be cyclosporin C. Cyclosporin C showed a broad-spectrum activity against filamentous phytopathogenic fungi but no activity against bacteria or yeasts. Its antifungal activity is only fungistatic. In contrast to Tolypocladium inflatum, another cyclosporin-producing strain, A. luzulae, did not produce additional cyclosporins. This was confirmed by in vivo-directed biosynthesis.
Regulation of tumor angiogenesis by p53-induced degradation of hypoxia-inducible factor 1alpha. (2000)

The switch to an angiogenic phenotype is a fundamental determinant of neoplastic growth and tumor progression. We demonstrate that homozygous deletion of the p53 tumor suppressor gene via homologous recombination in a human cancer cell line promotes the neovascularization and growth of tumor xenografts in nude mice. We find that p53 promotes Mdm2-mediated ubiquitination and proteasomal degradation of the HIF-1alpha subunit of hypoxia-inducible factor 1 (HIF-1), a heterodimeric transcription factor that regulates cellular energy metabolism and angiogenesis in response to oxygen deprivation. Loss of p53 in tumor cells enhances HIF-1alpha levels and augments HIF-1-dependent transcriptional activation of the vascular endothelial growth factor (VEGF) gene in response to hypoxia. Forced expression of HIF-1alpha in p53-expressing tumor cells increases hypoxia-induced VEGF expression and augments neovascularization and growth of tumor xenografts. These results indicate that amplification of normal HIF-1-dependent responses to hypoxia via loss of p53 function contributes to the angiogenic switch during tumorigenesis.
Fast Encoding of Polar Codes With Reed–Solomon Kernel (2016)

A low-complexity systematic encoding algorithm for polar codes with Reed-Solomon (RS) kernel is presented. The proposed method relies on fast Fourier transform-based RS encoding techniques. An application of polar codes in storage systems is considered.
Tools for GPCR drug discovery (2012)

G-protein-coupled receptors (GPCRs) mediate many important physiological functions and are considered as one of the most successful therapeutic targets for a broad spectrum of diseases. The design and implementation of high-throughput GPCR assays that allow the cost-effective screening of large compound libraries to identify novel drug candidates are critical in early drug discovery. Early functional GPCR assays depend primarily on the measurement of G-protein-mediated 2nd messenger generation. Taking advantage of the continuously deepening understanding of GPCR signal transduction, many G-protein-independent pathways are utilized to detect the activity of GPCRs, and may provide additional information on functional selectivity of candidate compounds. With the combination of automated imaging systems and label-free detection systems, such assays are now suitable for high-throughput screening (HTS). In this review, we summarize the most widely used GPCR assays and recent advances in HTS technologies for GPCR drug discovery.
Development of Proteinase-Activated Receptor 1 Antagonists as Therapeutic Agents for Thrombosis, Restenosis and Inflammatory Diseases (2003)

Thrombin, a plasma serine protease, plays a key role not only in coagulation and hemostasis but in thrombosis, restenosis and atherosclerosis. Thrombin activates platelets, endothelium, inflammatory cells and smooth muscle cells. The cellular action of thrombin is mediated by specific G-protein coupled thrombin receptors called proteinase-activated receptors (protease-activated receptor or PARs). Among the three thrombin receptors, PAR1 is the primary thrombin receptor in human and animal cells with an exception of non-primate platelets. An increased thrombin generation and PAR1 expression are observed on cells within atherosclerotic plaque and thrombus and following vascular injury. Animal studies with PAR1 deficient mice and small molecule antagonists indicate an important role of PAR1 in thrombosis and restenosis and thus the therapeutic potential of a PAR1 antagonist in treating these diseases. Development of a thrombin receptor tethered ligand analog binding assay led to the discovery of several different series of potent, nonpeptide small molecular antagonists of PAR1. These antagonists are PAR1 selective and inhibit most of the cellular effects of thrombin. A PAR1 antagonist has an advantage over a direct thrombin inhibitor since it does not inhibit enzymatic action of thrombin in the coagulation cascade with the consequent minimal bleeding side-effects, unlike a direct thrombin inhibitor. In addition, the emerging evidence for the role of PAR1 in various inflammatory diseases suggests as yet unexplored therapeutic potentials of PAR1 antagonists in various inflammatory diseases.
Genetically Engineered Oncolytic Newcastle Disease Virus Effectively Induces Sustained Remission of Malignant Pleural Mesothelioma (2010)

Malignant pleural mesothelioma is a highly aggressive tumor. Alternative treatment strategies such as oncolytic viral therapy may offer promising treatment options in the future. In this study, the oncolytic efficacy and induction of tumor remission by a genetically engineered Newcastle disease virus [NDV; NDV(F3aa)-GFP; GFP, green fluorescent protein] in malignant pleural mesothelioma is tested and monitored by bioluminescent tumor imaging. The efficacy of NDV(F3aa)-GFP was tested against several mesothelioma cell lines in vitro. Firefly luciferase-transduced MSTO-211H* orthotopic pleural mesothelioma tumor-bearing animals were treated with either single or multiple doses of NDV(F3aa)-GFP at different time points (days 1 and 10) after tumor implantation. Tumor burden was assessed by bioluminescence imaging. Mesothelioma cell lines exhibited dose-dependent susceptibility to NDV lysis in the following order of sensitivity: MSTO-211H > MSTO-211H* > H-2452 > VAMT > JMN. In vivo studies with MSTO-211H* cells showed complete response to viral therapy in 65% of the animals within 14 days after treatment initiation. Long-term survival in all of these animals was >50 days after tumor installation (control animals, <23 d). Multiple treatment compared with single treatment showed a significantly better response (P = 0.005). NDV seems to be an efficient viral oncolytic agent in the therapy of malignant pleural mesothelioma in an orthotopic pleural mesothelioma tumor model.
Activation of T Cell Calcium Influx by the Second Messenger ADP-ribose (2005)

Stimulation of Jurkat T cells by high concentrations of concanavalin A (ConA) induced an elevation of the endogenous adenosine diphosphoribose (ADPR) concentration and an inward current significantly different from the Ca2+ release-activated Ca2+ current (I(CRAC)). Electrophysiological characterization and activation of a similar current by infusion of ADPR indicated that the ConA-induced current is carried by TRPM2. Expression of TRPM2 in the plasma membrane of Jurkat T cells was demonstrated by reverse transcription-PCR, Western blot, and immunofluorescence. Inhibition of ADPR formation reduced ConA-mediated, but not store-operated, Ca2+ entry and prevented ConA-induced cell death of Jurkat cells. Moreover, gene silencing of TRPM2 abolished the ADPR- and ConA-mediated inward current. Thus, ADPR is a novel second messenger significantly involved in ConA-mediated cell death in T cells.
<title>Therapy Imaging: Limitations Of Imaging With High Energy X-Ray Beams</title> (1987)

One of the major problems in radiation therapy is ensuring that the correct region of the patient receives the prescribed x-ray treatment and that the surrounding tissues are spared. One way to identify patient positioning errors is to make an image using the radiotherapy treatment beam. We have examined two of the factors that can influence the quality of images made with high energy x-ray beams: (i) the size of the x-ray source, and; (ii) the signal-to-noise characteristics of the detectors used to form images with high energy x-ray beams. We have developed a novel method of measuring the source distributions for <sup>60</sup>Co machines and linear accelerators and from the measurements have been able to obtain the modulation transfer functions of their x-ray sources. We have also measured the modulation transfer functions (MTFs) and the noise power spectra (NPS) of the x-ray detectors. Based on these measurements, we conclude that images made with high energy x-ray beams are limited by film granularity and that improved images can be obtained by alternative detector systems.
Zinc Finger Transcription Factor Egr-1 Activates Flt-1 Gene Expression in THP-1 Cells on Induction for Macrophage Differentiation (2000)

Activation of macrophages is a hallmark of atherosclerosis. Stimulation of human monocytic leukemia THP-1 cells with phorbol 12-myristate 13-acetate (PMA) is known to induce a variety of genes whose function is relevant to activated macrophages. Flt-1, a receptor tyrosine kinase for vascular endothelial growth factor, is expressed in macrophages as well as in endothelial cells and mediates the biological response to vascular endothelial growth factor. In this study, we investigated the molecular mechanisms underlying the inducible expression of the flt-1 gene during the activation of THP-1 cells. Reverse transcription-polymerase chain reaction analysis showed that exposure of THP-1 cells to PMA increases flt-1 mRNA and protein levels. A transfected reporter gene, consisting of the human flt-1 promoter region coupled to the luciferase gene, indicated a direct effect of PMA on transcriptional activity. Transfection analysis of a series of 5'-deletion constructs and site-directed mutants localized the PMA-responsive region to a DNA stretch from -174 to -166, which represents overlapping Egr-1/Sp1 transcription factor-binding sites. Competitive gel mobility shift assays and supershift assays showed that PMA induces the binding of Egr-1 to this site. Consistent with these findings, the Egr-1 expression plasmid strongly induced flt-1 promoter activity in a sequence-specific manner. Taken together, our data demonstrate that PMA induces flt-1 gene transcription through an induction of Egr-1 in THP-1 cells, thus providing new evidence that the flt-1 gene is a direct target of Egr-1, the transcription factor primarily induced on macrophage differentiation.