gebhart/patrepeval huggingface dataset:
Asymmetric Catalysis by Architectural and Functional Molecular Engineering: Practical Chemo- and Stereoselective Hydrogenation of Ketones (2001)

Hydrogenation is a core technology in chemical synthesis. High rates and selectivities are attainable only by the coordination of structurally well-designed catalysts and suitable reaction conditions. The newly devised [RuCl(2)(phosphane)(2)(1,2-diamine)] complexes are excellent precatalysts for homogeneous hydrogenation of simple ketones which lack any functionality capable of interacting with the metal center. This catalyst system allows for the preferential reduction of a C=O function over a coexisting C=C linkage in a 2-propanol solution containing an alkaline base. The hydrogenation tolerates many substituents including F, Cl, Br, I, CF(3), OCH(3), OCH(2)C(6)H(5), COOCH(CH(3))(2), NO(2), NH(2), and NRCOR as well as various electron-rich and -deficient heterocycles. Furthermore, stereoselectivity is easily controlled by the electronic and steric properties (bulkiness and chirality) of the ligands as well as the reaction conditions. Diastereoselectivities observed in the catalytic hydrogenation of cyclic and acyclic ketones with the standard triphenylphosphane/ethylenediamine combination compare well with the best conventional hydride reductions. The use of appropriate chiral diphosphanes, particularly BINAP compounds, and chiral diamines results in rapid and productive asymmetric hydrogenation of a range of aromatic and heteroaromatic ketones and gives a consistently high enantioselectivity. Certain amino and alkoxy ketones can be used as substrates. Cyclic and acyclic alpha,beta-unsaturated ketones can be converted into chiral allyl alcohols of high enantiomeric purity. Hydrogenation of configurationally labile ketones allows for the dynamic kinetic discrimination of diastereomers, epimers, and enantiomers. This new method shows promise in the practical synthesis of a wide variety of chiral alcohols from achiral and chiral ketone substrates. Its versatility is manifested by the asymmetric synthesis of some biologically significant chiral compounds. The high rate and carbonyl selectivity are based on nonclassical metal-ligand bifunctional catalysis involving an 18-electron amino ruthenium hydride complex and a 16-electron amido ruthenium species.
Interleukin-15 Triggers Activation and Growth of the CD8 T-Cell Pool in Extravascular Tissues of Patients With Acquired Immunodeficiency Syndrome (1997)

The impairment of interleukin-2 (IL-2) production occurs very early after human immunodeficiency virus (HIV) infection as a consequence of the quantitative depletion of Th1 cells. Despite the shift in cytokine production, most individuals develop an oligoclonal expansion of major histocompatibility complex restricted, HIV-specific CD8+ cytotoxic T lymphocytes (CTL) in different organs, suggesting that other cytokines replace IL-2 in initiating the tissue infiltration of CD8+ T cells. In this study we show that IL-15, a product of monocyte-macrophages and non-T cells and which has overlapping biological activities with IL-2, is involved in local cell networks accounting for the activation and expansion of CD8+ T-cell pools in a highly affected organ, ie, the lung. IL-15 induced proliferation of T cells obtained from the lower respiratory tract of HIV-infected patients with T-cell alveolitis and severe depletion of CD4+ T cells. Lung lymphocytes were CD45R0+/CD8+ T cells spontaneously expressing activation markers (CD69 and HLA-DR) and equipped with the receptorial subunits which bind IL-15, notably the β and γ chains of the IL-2 receptor (IL-2R) and the recently identified IL-15 binding-protein termed IL-15Rα. Similar phenotypic findings were obtained after incubation of normal T cells with IL-15, which induced CD8+ T cells to express activation markers and to proliferate. The block of the IL-2Rβ/IL-2Rγ complex with specific monoclonal antibodies abolished the T-cell stimulatory activity of IL-15 while the combination of IL-15 and tumor necrosis factor-α upregulated the proliferative response of lung T lymphocytes. The hypothesis that the tissue growth of lung CD8+ lymphocytes may involve cytokines produced from cells other than T lymphocytes was confirmed by the evidence that pulmonary macrophages expressed high levels of IL-15 and that anti–IL-15 antibodies inhibited the accessory function of alveolar macrophages on mitogen-induced CD8+ T-cell proliferation. Together, these results suggest that macrophage-derived cytokines produced at sites of T-cell infiltration play a role in the activation of HIV-specific CD8+ T-cell–mediated immune response.
Evolutionary optimization of multistage interconnection networks performance (2009)

The paper deals with optimization of collective communications on multistage interconnection networks (MINs). In the experimental work, unidirectional MINs like Omega, Butterfly and Clos are investigated. The study is completed by bidirectional binary, fat and full binary tree. To avoid link contentions and associated delays, collective communications are processed in synchronized steps. Minimum number of steps is sought for the given network topology, wormhole switching, minimum routing and given sets of sender and/or receiver nodes. Evolutionary algorithm proposed in this paper is able to design optimal schedules for broadcast and scatter collective communications. Acquired optimum schedules can simplify the consecutive writing high-performance communication routines for application-specific networks on chip, or for development of communication libraries in case of general-purpose multistage interconnection networks.
Recombinant human mast cell growth factor supports erythroid colony formation in polycythemia vera in the presence and absence of erythropoietin and serum. (1993)

The effect of mast cell growth factor (MGF) was studied on erythropoietin (Epo)-dependent and Epo-independent ("spontaneous") erythroid colony formation in patients with polycythemia vera (PV). MGF stimulated both Epo-dependent and Epo-independent erythroid colony formation from PV peripheral blood progenitor cells in vitro at a dose similar to normal erythroid progenitor. In addition, evidence was obtained that the stimulating effect of MGF was a direct effect on the erythroid progenitor and independent of serum. Antibodies against interleukin-1 (IL-1), IL-3, granulocyte-macrophage colony-stimulating factor (GM-CSF), and Epo could not abolish the enhancing effect of MGF. This was also supported by the finding that sorted CD34+ cells could be stimulated by MGF in the presence and absence of Epo. Finally, it was demonstrated that the spontaneous erythroid colony formation could not be ascribed to spontaneous release of MGF in the culture medium since anti-MGF did not affect the colony numbers. In conclusion, MGF has a direct stimulatory effect, independent of serum, on both Epo-dependent and Epo-independent erythroid colony formation in PV.
High-Throughput Methods for Culturing Microorganisms in Very-Low-Nutrient Media Yield Diverse New Marine Isolates (2002)

Microbial diversity studies based on the cloning and sequencing of DNA from nature support the conclusion that only a fraction of the microbial diversity is currently represented in culture collections. Out of over 40 known prokaryotic phyla, only half have cultured representatives. In an effort to culture the uncultured phylotypes from oligotrophic marine ecosystems, we developed high-throughput culturing procedures that utilize the concept of extinction culturing to isolate cultures in small volumes of low-nutrient media. In these experiments, marine bacteria were isolated and cultivated at in situ substrate concentrations-typically 3 orders of magnitude less than common laboratory media. Microtiter plates and a newly developed procedure for making cell arrays were employed to raise the throughput rate and lower detection sensitivity, permitting cell enumeration from 200-microl aliquots of cultures with densities as low as 10(3) cells/ml. Approximately 2,500 extinction cultures from 11 separate samplings of marine bacterioplankton were screened over the course of 3 years. Up to 14% of the cells collected from coastal seawater were cultured by this method, which was 14- to 1,400-fold higher than the numbers obtained by traditional microbiological culturing techniques. Among the microorganisms cultured were four unique cell lineages that belong to previously uncultured or undescribed marine Proteobacteria clades known from environmental gene cloning studies. These cultures are related to the clades SAR11 (alpha subclass), OM43 (beta subclass), SAR92 (gamma subclass), and OM60/OM241 (gamma subclass). This method proved successful for the cultivation of previously uncultured marine bacterioplankton that have consistently been found in marine clone libraries.
Drying and Storage Effects on Germination of Primed Grass Seeds (1994)

Cheatgrass (Bromus tectorum L.) has become the dominant species over large areas of rangeland in the Great Basin region of the western United States. Rapid germination at low temperature may contribute to the competitive success of cheatgrass in areas formerly dominated by native sagebrush and bunchgrass species. The objectives of this study were to determine whether seed priming could be used to stimulate low-temperature germination rate of native bunchgrass seeds and whether any priming effect was retained after drying and storage. Matric-priming was used to enhance germination rate response of 7 Great Basin native perennial grasses: thickspike wheatgrass [Agropyron dasystachyum (Hook.) Scribn.], bluebunch wheatgrass [Pseudoroegneria spicata (Pursh) Love], canby bluegrass (Poa canbyi Scribn.), sandberg bluegrass (Poa sandbergii Vasey.), bottlebrush squirreltail [Sitanion hystrix (Nutt.) J.G. Smith], sheep fescue (Festuca ovina L.), and basin wildrye [Leymus cinereus (Scribn. and Merr.) A. Love]. Priming enhanced germination rate of these species by 4 to 8 days at 10 degrees C. All species except canby bluegrass and basin wildrye could be induced to germinate as quickly as cheatgrass if they were not air-dried after priming. All species except canby bluegrass retained significant germination enhancement after 11 weeks of storage but only bluebunch wheatgrass maintained a germination rate comparable to cheatgrass when seeds were dried for storage.
The Structure of MbtI from Mycobacterium tuberculosis , the First Enzyme in the Biosynthesis of the Siderophore Mycobactin, Reveals It To Be a Salicylate Synthase (2006)

The ability to acquire iron from the extracellular environment is a key determinant of pathogenicity in mycobacteria. Mycobacterium tuberculosis acquires iron exclusively via the siderophore mycobactin T, the biosynthesis of which depends on the production of salicylate from chorismate. Salicylate production in other bacteria is either a two-step process involving an isochorismate synthase (chorismate isomerase) and a pyruvate lyase, as observed for Pseudomonas aeruginosa, or a single-step conversion catalyzed by a salicylate synthase, as with Yersinia enterocolitica. Here we present the structure of the enzyme MbtI (Rv2386c) from M. tuberculosis, solved by multiwavelength anomalous diffraction at a resolution of 1.8 A, and biochemical evidence that it is the salicylate synthase necessary for mycobactin biosynthesis. The enzyme is critically dependent on Mg2+ for activity and produces salicylate via an isochorismate intermediate. MbtI is structurally similar to salicylate synthase (Irp9) from Y. enterocolitica and the large subunit of anthranilate synthase (TrpE) and shares the overall architecture of other chorismate-utilizing enzymes, such as the related aminodeoxychorismate synthase PabB. Like Irp9, but unlike TrpE or PabB, MbtI is neither regulated by nor structurally stabilized by bound tryptophan. The structure of MbtI is the starting point for the design of inhibitors of siderophore biosynthesis, which may make useful lead compounds for the production of new antituberculosis drugs, given the strong dependence of pathogenesis on iron acquisition in M. tuberculosis.
The Biochemistry of Plant Lectins (Phytohemagglutinins) (1973)

The Hippo pathway was initially discovered in Drosophila melanogaster as a key regulator of tissue growth. It is an evolutionarily conserved signaling cascade regulating numerous biological processes, including cell growth and fate decision, organ size ...Read More
A Fourier Perspective on Model Robustness in Computer Vision (2019)

Achieving robustness to distributional shift is a longstanding and challenging goal of computer vision. Data augmentation is a commonly used approach for improving robustness, however robustness gains are typically not uniform across corruption types. Indeed increasing performance in the presence of random noise is often met with reduced performance on other corruptions such as contrast change. Understanding when and why these sorts of trade-offs occur is a crucial step towards mitigating them. Towards this end, we investigate recently observed trade-offs caused by Gaussian data augmentation and adversarial training. We find that both methods improve robustness to corruptions that are concentrated in the high frequency domain while reducing robustness to corruptions that are concentrated in the low frequency domain. This suggests that one way to mitigate these trade-offs via data augmentation is to use a more diverse set of augmentations. Towards this end we observe that AutoAugment, a recently proposed data augmentation policy optimized for clean accuracy, achieves state-of-the-art robustness on the CIFAR-10-C benchmark.
Phosphatidic acid that accumulates in platelet-derived growth factor-stimulated Balb/c 3T3 cells is a potential mitogenic signal. (1992)

We developed a monoclonal antibody specific to phosphatidic acid (PA). Using this antibody, a novel method to quantify trace amounts of PA was achieved. With the method, PA can be measured in the range of 20-500 pmol. We applied this method to quantify changes in PA levels in Balb/c 3T3 cells stimulated by platelet-derived growth factor. PA contents were very low in quiescent cells and dramatically increased with time up to 15 min. On the other hand, a biphasic diacylglycerol (DG) increase was found. The early phase showed a transient small peak of DG at 30 s followed by a decrease to 1 min. In the second phase, DG accumulated gradually but very markedly up to 15 min. Treatment with propranolol, a PA phosphohydrolase inhibitor, enhanced the accumulation of PA and inhibited the formation of DG in the second phase. However, R59022, a DG kinase inhibitor, did not influence the accumulation of DG or PA, suggesting that platelet-derived growth factor stimulates mainly phospholipase D-catalyzed hydrolysis of phospholipids rather than phospholipase C-catalyzed hydrolysis in the second phase. PA, even after contaminating lyso-PA was removed, could stimulate DNA synthesis, although lyso-PA was 25 times more potent. Moreover, phospholipase D was found to be a much stronger mitogen than phospholipase C. Phospholipase D treatment caused a biphasic accumulation of PA. PA levels reached a maximum at 1 h, and then decreased between 1 and 2 h; finally, there was a gradual elevation up to 10 h. In this case, there was no significant DG accumulation. On the other hand, phospholipase C treatment induced only DG accumulation without any significant change in PA. These results indicate that PA accumulation, rather than an increase in DG, correlates well with mitogenesis.
A General Method for the Preparation of 4- and 6-Azaindoles (2002)

Nitropyridines reacted with an excess of vinyl Grignard reagent to produce 4- or 6-azaindoles. Improved yields were obtained when a halogen atom was present at the position alpha to the nitrogen atom in the pyridine ring.
Current-monitoring method for measuring the electroosmotic flow rate in capillary zone electrophoresis (1988)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTCurrent-monitoring method for measuring the electroosmotic flow rate in capillary zone electrophoresisXiaohua. Huang, Manuel J. Gordon, and Richard N. ZareCite this: Anal. Chem. 1988, 60, 17, 1837–1838Publication Date (Print):September 1, 1988Publication History Published online1 May 2002Published inissue 1 September 1988https://pubs.acs.org/doi/10.1021/ac00168a040https://doi.org/10.1021/ac00168a040research-articleACS PublicationsRequest reuse permissionsArticle Views2089Altmetric-Citations397LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
The Catalytic Dehydrohalogenation of Haloethanes on Solid Acids and Bases (1971)

Abstract The elimination reactions of haloethanes and halopropanes on solid acids and bases, including a series of metal sulfates supported by silica gel, were studied at 300°C by means of the pulse technique in order to clarify the mechanism of the catalytic dehydrohalogenation. The trans-1,2-dichloroethylene/cis-1,2-dichloroethylene (trans-1,2/cis-1,2) selectivities from 1,1,2-trichloroethanes as well as the activities of the metal sulfates supported by silica gel were well correlated with the electronegativities of the metal ions. Generally speaking, the rates of the dehydrochlorination from chloroalkanes were nearly equal to those of the dehydrobromination from bromoalkanes on the solid acids, but the latter were larger than the former on solid bases. The reactivities of the alkylhalides on solid acids and bases were examined from the electronic view-point, and we tried to correlate them with some reactivity indexes. A kinetic isotope effect with regard to hydrogen was observed on solid bases, but not on solid acids, in the dehydrobromination of 1,2-dibromoethane. From these facts, it was concluded that the dehydrohalogenation proceeds through a carbonium-ion mechanism on solid acids and via an E2 step-by-step mechanism on solid bases.
Charge-transfer processes in single CdSe/ZnS quantum dots with p-type NiO nanoparticles (2010)

Charge-transfer processes in single QDs with p-type NiO nanoparticles result in fluorescence intensity and lifetime quenching, suppression of blinking behavior and enhancement of the dot's survival time.
[Effects of microwave irradiation on isolation of soil actinomycetes]. (2008)

Dilution plate- and agar block methods were employed to study the effects of microwave irradiation on the isolation of soil actinomycetes. The results showed that: 1) Microwave irradiation could significantly increase the total quantity of isolated actinomycetes. With the increasing duration of microwave irradiation, the total quantity of actinomycetes in soils with high organic matter content tended to increase first and decrease then. This quantity on GA and HA culture medium increased by 8.3%-92.6% and 24.4%-108.5% when the irradiation lasted 3-15 minutes, but decreased by 62.1%-78.8% and 41.4%-79.8%, respectively when the irradiation lasted 18-24 minutes, in comparison with that on the control medium. Microwave irradiation showed no remarkable effects on the total quantity of actinomycetes in the soils with low organic matter content. 2) Microwave irradiation also exerted remarkable effects on the number of actinomycetes species. With the increase of irradiation duration, the actinomycetes species number in soils with high organic matter content appeared to increase first and decrease then. When the irradiation lasted 3-24 minutes, the newly identified actinomycetes species on GA and HA culture medium, which included rare actinomycete genera such as Promicromonospora and Streptoverticillium, took up 62.5%-85.7% and 66.7%-83.3% of all the actinomycetes species respectively, and the genus Streptmycete also had obvious variation. Soils with low organic matter content showed the similar tendency. 3) Microwave irradiation could exert remarkable effects on the percentages of antimicrobial actinomycetes strains to all test actinomycete strains. When the microwave irradiation lasted 6, 9, and 15 minutes, the percentages of antimicrobial antinomycetes strains on the culture mediums increased by 66.7%, 66.7%, and 83.3%, and the newly identified antimicrobial antinomycetes strains made up 70.0%, 90.0%, and 81.8% of all the antimicrobial antinomycetes strains, respectively.
Fortificaciones abaluartadas de Extremadura: planos inéditos de Moraleja, Zarça de Alcántara, Valencia de Alcántara y Alburquerque (2006)

A growing body of literature on mosquito oviposition behavior supports the hypothesis that females place eggs in habitats that provide best available opportunity for growth, development, and maturation of their offspring. We conducted a field experiment to evaluate Culex oviposition behavior in response to the interspecific competitor Aedes triseriatus (Say) (Diptera: Culicidae) larvae, and resources in the form of quantity of plant detritus, and dissolved nitrogen (TN) and phosphorus (TP) derived from that detritus. We tested a set of specific predictions: 1) As a poorer competitor, Culex will avoid ovipositing in containers with superior interspecific competitors; 2) Culex choose oviposition habitats that contain greater amount of resources for the microbial food of their offspring; 3) Sufficiently high resource abundance can override avoidance of oviposition in containers with interspecific competitors. Culex restuans Theobald (Diptera: Culicidae) was the only species ovipositing, and the oviposition responses changed over time. The effect of resources was more important in driving oviposition decisions at the beginning and end of the experiment. The amount of resources, as manifest by TN and TP concentrations, had differential effects on oviposition. At the beginning females laid more eggs in containers with low detritus, which had the highest TN. After that, females preferred those containers with high detritus, which had low TN and high TP. The effect of competitors was important only during the middle of the experiment. Paradoxically, even as a poorer competitor Cx. restuans preferentially oviposited in containers with late-instar Ae. triseriatus, suggesting that the presence of successful heterospecifics indicates a good quality larval habitat.