gebhart/patrepeval huggingface dataset:
Therapeutic potential of appropriately evaluated safe-induced pluripotent stem cells for spinal cord injury (2010)

Various types of induced pluripotent stem (iPS) cells have been established by different methods, and each type exhibits different biological properties. Before iPS cell-based clinical applications can be initiated, detailed evaluations of the cells, including their differentiation potentials and tumorigenic activities in different contexts, should be investigated to establish their safety and effectiveness for cell transplantation therapies. Here we show the directed neural differentiation of murine iPS cells and examine their therapeutic potential in a mouse spinal cord injury (SCI) model. "Safe" iPS-derived neurospheres, which had been pre-evaluated as nontumorigenic by their transplantation into nonobese diabetic/severe combined immunodeficiency (NOD/SCID) mouse brain, produced electrophysiologically functional neurons, astrocytes, and oligodendrocytes in vitro. Furthermore, when the safe iPS-derived neurospheres were transplanted into the spinal cord 9 d after contusive injury, they differentiated into all three neural lineages without forming teratomas or other tumors. They also participated in remyelination and induced the axonal regrowth of host 5HT(+) serotonergic fibers, promoting locomotor function recovery. However, the transplantation of iPS-derived neurospheres pre-evaluated as "unsafe" showed robust teratoma formation and sudden locomotor functional loss after functional recovery in the SCI model. These findings suggest that pre-evaluated safe iPS clone-derived neural stem/progenitor cells may be a promising cell source for transplantation therapy for SCI.
The who's who of T‐cell differentiation: Human memory T‐cell subsets (2013)

Following antigen encounter and subsequent resolution of the immune response, a single naïve T cell is able to generate multiple subsets of memory T cells with different phenotypic and functional properties and gene expression profiles. Single-cell technologies, first and foremost flow cytometry, have revealed the complex heterogeneity of the memory T-cell compartment and its organization into subsets. However, a consensus has still to be reached, both at the semantic (nomenclature) and phenotypic level, regarding the identification of these subsets. Here, we review recent developments in the characterization of the heterogeneity of the memory T-cell compartment, and propose a unified classification of both human and nonhuman primate T cells on the basis of phenotypic traits and in vivo properties. Given that vaccine studies and adoptive cell transfer immunotherapy protocols are influenced by these recent findings, it is important to use uniform methods for identifying and discussing functionally distinct subsets of T cells.
Isolation of Mycobacterium avium subsp paratuberculosis from breast milk of Crohn's disease patients (2000)

Isolation of Mycobacterium avium subsp paratuberculosis from breast milk of Crohn's disease patients
Differences in enzyme activities of Lipomyces starkeyi between cells accumulating lipid and proliferating cells (1987)

Abstract Differences in intracellular enzyme activities between cells accumulating lipid and proliferating cells were studied with Lipomyces starkeyi , a fat‐producing yeast. When the cells were removed from a medium for lipid accumulation to a medium for cell proliferation, activities of several enzymes on the glycolytic pathway, pentosephosphate cycle, glycerol 3‐phosphate pathway, tricarboxylic acid cycle and fatty‐acid biosynthesis pathway changed. In the proliferating cells, activities of glycerol‐3‐phosphate dehydrogenase (GDH) and ATP citrate lyase were very low, as compared to those in the cells accumulating lipids. Activities of these two enzymes and 6‐phosphogluconate dehydrogenase, particularly GDH, decreased with the addition of zinc ion to the cell‐free extract of the cells accumulating lipid.
Review of: “Human Factors in Engineering and Design,” 6th edn. By M. S. SANDERS and E. J. MCCORMICK. (New York: McGraw-Hill, 1987.) [Pp. viii + 664.] No price given. (1989)

(1989). Review of: “Human Factors in Engineering and Design,” 6th edn. By M. S. SANDERS and E. J. MCCORMICK. (New York: McGraw-Hill, 1987.) [Pp. viii + 664.] No price given. Ergonomics: Vol. 32, No. 5, pp. 558-558.
Diagnostic Interview for Genetic Studies (1994)

This article reports on the development and reliability of the Diagnostic Interview for Genetic Studies (DIGS), a clinical interview especially constructed for the assessment of major mood and psychotic disorders and their spectrum conditions. The DIGS, which was developed and piloted as a collaborative effort of investigators from sites in the National Institute of Mental Health (NIMH) Genetics Initiative, has the following additional features: (1) polydiagnostic capacity; (2) a detailed assessment of the course of the illness, chronology of psychotic and mood syndromes, and comorbidity; (3) additional phenomenologic assessments of symptoms; and (4) algorithmic scoring capability. The DIGS is designed to be employed by interviewers who exercise significant clinical judgment and who summarize information in narrative form as well as in ratings. A two-phase test-retest (within-site, between-site) reliability study was carried out for DSM-III-R criteria-based major depression, bipolar disorder, schizophrenia, and schizoaffective disorder. Reliabilities using algorithms were excellent (0.73 to 0.95), except for schizoaffective disorder, for which disagreement on estimates of duration of mood syndromes relative to psychosis reduced reliability. A final best-estimate process using medical records and information from relatives as well as algorithmic diagnoses is expected to be more reliable in making these distinctions. The DIGS should be useful as part of archival data gathering for genetic studies of major affective disorders, schizophrenia, and related conditions.
Successful Cu-Mediated Atom Transfer Radical Polymerization in the Absence of Conventional Chelating Nitrogen Ligands (2009)

ADVERTISEMENT RETURN TO ISSUEPREVCommunication to the...Communication to the EditorNEXTSuccessful Cu-Mediated Atom Transfer Radical Polymerization in the Absence of Conventional Chelating Nitrogen LigandsYeap-Hung Ng, Han Hong*, Sze-Yue Wong, Kai-Shuang Lim, and Christina L. L. ChaiView Author Information Institute of Chemical and Engineering Sciences, 1, Pesek Road, Jurong Island, Singapore 627833*Corresponding author. E-mail: [email protected]Cite this: Macromolecules 2010, 43, 2, 592–594Publication Date (Web):December 29, 2009Publication History Received13 September 2009Revised5 December 2009Published online29 December 2009Published inissue 26 January 2010https://pubs.acs.org/doi/10.1021/ma902030rhttps://doi.org/10.1021/ma902030rrapid-communicationACS PublicationsCopyright © 2009 American Chemical SocietyRequest reuse permissionsArticle Views1249Altmetric-Citations3LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information SUBJECTS:Monomers,Organic compounds,Polymerization,Polymers,Radical polymerization Get e-Alerts
A dimethylmaleic acid–melittin‐polylysine conjugate with reduced toxicity, pH‐triggered endosomolytic activity and enhanced gene transfer potential (2007)

Modification of the polycationic carrier PLL with DMMAn-masked melittin not only enhances gene transfer efficiency, but also strongly reduces the acute toxicity of melittin and PLL. Hence this modification might be useful for optimizing polycationic gene carriers.
Kinin Modulation of Conventional Outflow Facility in the Bovine Eye (2006)

The aim of this study was to investigate the effects of bradykinin on conventional outflow facility in relation to kinin effects on matrix metalloproteinase (MMP) secretion. Conventional outflow facility was measured in isolated bovine segments perfused at a constant pressure of 10 mmHg. Experiments were also performed in primary cultures of bovine trabecular meshwork cells to assess bradykinin effects on the secretion of MMP-9 assessed by western blot. Administration of bradykinin (10(-7) M) to perfused anterior segments produced a 50% increase in outflow facility above basal levels. The effect was slow to develop, requiring 100 min for a significant increase in facility and 4 h for the peak response to be observed. Pretreatment of anterior segments with the B(2) kinin receptor antagonist, HOE-140 (10(-6) M), or with the nonselective MMP inhibitor, GM6001 (10(-5) M) blocked the response to bradykinin (10(-7) M). Treatment of cultured trabecular meshwork cells with bradykinin (10(-7) M) for 120 min stimulated secretion of MMP-9 into the extracellular media, and this response was inhibited by HOE-140 (10(-6) M). These results demonstrate that bradykinin activates B(2) kinin receptors to increase conventional outflow in the perfused bovine eye and provide evidence that secretion and activation of MMPs within the conventional pathway may mediate the effect.
Metformin activates AMP-activated protein kinase in primary human hepatocytes by decreasing cellular energy status (2011)

Activation of hepatic AMPK by metformin results from a decrease in cellular energy status owing to metformin's AMPK-independent inhibition of the mitochondrial respiratory-chain complex 1. The unique profile of AMPK subunits found in human hepatocytes should be considered when developing new pharmacological agents to target the kinase.
Biological Roots of Human Conflict (2014)

Les arrels biològiques dels conflictes humans vénen de lluny en la seva evolució i són, per tant, profundes. Per sort, algunes de les nostres tendències humanes més destructives poden ser mitigades o eliminades mitjançant l’evolució cultural. Però atès que la cultura és per a la biologia el mateix que el programari és per al maquinari, cal entendre correctament la naturalesa biològica dels conflictes per a poder proporcionar solucions, a més de bastir unes cultures de pau duradores. Aquest article se centra en les arrels biològiques dels conflictes humans. Una continuació seva giraria al voltant de la resolució de conflictes mitjançant l’evolució cultural.
Imiquimod 5% cream for the treatment of actinic keratoses. (2005)

Actinic keratoses (AKs) are premalignant inflammatory skin lesions with the potential to transform into squamous cell carcinoma (SCC). There are several treatment options available for patients presenting with multiple AKs. Imiquimod is believed to stimulate and enhance host immune responses locally against skin tumors and viral infections. Five clinical studies to date have demonstrated its safety and efficacy in the treatment of actinic keratoses. Long-term follow-up studies examining recurrence rates are limited.
Preliminary Observations of the Effects on Breast Adenocarcinoma of Plasma Perfused over Immobilized Protein A (1981)

PROTEIN A, a constituent of the cell wall of Staphylococcus aureus Cowans 1 (SpA), reacts with the Fc region of immunoglobulins from many mammalian species and combines with immune complexes in serum.1 2 3 4 Previously, tumoricidal effects were observed in a patient with cancer of the colon after administration of autologous plasma that had been circulated over immobilized SpA.5 This approach was extended to dogs with spontaneous breast adenocarcinoma, and rapid and extensive tumor necrolytic reactions were noted after plasma perfusion over SpA but not over protein A-deficient staphylococcus.6 , 7 These findings were confirmed in an independent study.8 Similar tumor necrolytic responses were . . .
Modified Linear Polyethylenimine−Cholesterol Conjugates for DNA Complexation (2003)

Linear polyethylenimine (LPEI) is an effective nonviral gene carrier with transfection levels equal or above branched polyethylenimine (BPEI) and exhibits a lower cytotoxicity profile than BPEI. High molecular weight LPEI M(w) 25 k was modified with cholesterol in three different geometries: linear shaped (L), T-shaped (T), and a combined linear/T-shaped (LT) forming the LPEI-cholesterol (LPC) conjugates LPC-L, LPC-T, and LPC-LT, respectively. Physical characterization of LPC/pDNA complexes included particle size, zeta potential, DNase protection, mIL-12 p70 expression, and cytotoxicity. The particle size was further confirmed by atomic force microscopy (AFM). The LPC-T/pDNA complexes were optimal at N/P 10/1 that resulted in a particle size of approximately 250 nm, which was confirmed by AFM, and a surface charge of +10 mV. These complexes also effectively protected the pDNA for up to 180 min in the presence of DNase I. B16-F0 cells transfected with LPC-L and LPC-T showed protein expression levels higher than LPEI alone and twice that of BPEI but without any significant loss in cell viability. These results were confirmed with EGFP flow cytometry and transfection of Renca cells. The differences in rates of transfection of the LPC/pDNA complexes is due in part to conformational changes from the point of complex formation to interaction with the plasma membrane. These conformation changes provide protection for unprotonated secondary amines in the LPEI backbone by hydrophobic protection of the cholesterol moiety that we termed "unprotonated reserves". Finally, we show that LPC conjugates exploit receptor-mediated endocytosis via the LDL-R pathway with transgene expression levels decreasing nearly 20% after saturating the LDL-R sites on MCF-7 cells with hLDL-R-Ab.
Luminescent hybrid perovskite nanoparticles as a new platform for selective detection of 2,4,6-trinitrophenol (2014)

CH<sub>3</sub>NH<sub>3</sub>PbBr<sub>3</sub>based luminescent perovskite nanoparticles have been used for the selective detection of an explosive, 2,4,6-trinitrophenol (picric acid) with high sensitivity in solution and vapour state.
Growth, final height and endocrine sequelae in a UK population of patients with Hurler syndrome (MPS1H) (2011)

Growth is impaired, primarily related to skeletal dysplasia, but also associated with GH resistance. Pubertal development may be compromised and abnormalities of glucose metabolism are common. We recommend a structured endocrine surveillance programme for these patients.
<title>Quantitative integration of multimodality medical images</title> (1992)

Integration of medical images is an ever more popular topic in recent years. However, is it really possible to merge them? More precisely, in which degree is such integration reliable in a clinical and mathematical sense, and what are the criteria to accept the integration? In this study, the authors address the methodology of integration and evaluate the integrated medical images.
Supergain antennas: possibilities and problems (1995)

In principle, any desired amount of gain can be developed from an antenna of arbitrary size. The phenomena of high gain from very small antennas is called "supergain". To see why this statement might be so, the author recalls the construction used in optics, known as Huygens' principle. This states that every point on a wavefront can be regarded as a source of radiation. At the end of a short period of time, the envelope of all of these individual wavelets forms the new wavefront. For example, this construct explains why a shadow is not perfectly sharp, and why interference fringes form. End fire antennas, dipole antennas, Yagi antennas and quad antennas are examined.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Antiangiogenic activity of N-substituted and tetrafluorinated thalidomide analogues. (2003)

Inhibition of angiogenesis is currently perceived as one of the promising strategies in the treatment of cancer. The antiangiogenic property of thalidomide has inspired a second wave of research on this teratogenic drug. Previous studies from our group and others demonstrated that metabolites of thalidomide are responsible for the drug's pharmacological actions. On the basis of the structures of these metabolites, we synthesized 118 thalidomide analogues. Preliminary screening selected 7 of these 118 analogues for more extensive testing in the current study. In the rat aortic ring assay, all 4 analogues in the N-substituted class and 2 of the 3 analogues in the tetrafluorinated class significantly inhibited microvessel outgrowth at 12.5-200 microM. Thalidomide failed to block angiogenesis at similar concentrations. Subsequently, the effects of these analogues on human umbilical vein endothelial cell proliferation and tube formation were determined. Those analogues showing antiangiogenicity in the rat aortic ring assay also demonstrated antiproliferative action in human umbilical vein endothelial cells. Cell proliferation was not affected by thalidomide. Interestingly, all 7 analogues as well as thalidomide suppressed tube formation. Two tetrafluorinated analogues consistently showed the highest potency and efficacy in all three assays. The in vivo toxicity of representative analogues from each class was also evaluated. Taken together, our results support the further development and evaluation of novel thalidomide analogues as antiangiogenic agents.
Differential production of TNF by Kupffer cells after phagocytosis of E. coli and C. albicans (1994)

Tumor necrosis factor (TNF) of hepatic origin is thought to play a pivotal role early in the genesis of the septic shock syndrome, regardless of microbial etiology. To determine if production of TNF by Kupffer cells varies with microbial taxonomic class, we measured TNF secretory responses in primary cultures of rat Kupffer cells to numerically equivalent gram-negative bacterial or fungal phagocytic challenges. After a 30-min exposure to media, latex beads, soluble Escherichia coli lipopolysaccharide (LPS; serotype 055:B5), live or Formalin-fixed E. coli (serotype 055:B5), live or Formalin-fixed yeast-phase Candida albicans, or live hyphal-phase Candida, samples of culture supernatant were assessed at 30, 60, 120, and 240 min and at 24 h for TNF bioactivity by L929 cell cytotoxicity. Compared with media and latex bead controls, TNF levels progressively increased for up to 240 min after either LPS and equivalently in live E. coli or Formalin-fixed E. coli groups (P < 0.05). Formalin-fixed yeast-phase and live extracellular hyphal-phase C. albicans failed to stimulate production of TNF at any time point (6.9 +/- 0.7 and 8.7 +/- 0.4 U/ml, respectively, at t = 240 min; P < 0.05 vs. E. coli). In contrast, internalization of live yeast-phase C. albicans with subsequent hyphal formation and growth within Kupffer cells was accompanied by a rise in supernatant TNF levels (14.5 +/- 1.8 U/ml at t = 240 min).(ABSTRACT TRUNCATED AT 250 WORDS)
Efficacy of Vardenafil and Sildenafil in Facilitating Penile Erection in an Animal Model (2002)

Vardenafil and sildenafil are potent and specific phosphodiesterase type 5 (PDE 5) inhibitors. In human penile cavernosal smooth muscle cells, we have previously shown that vardenafil has a lower biochemical inhibition constant (Ki) than sildenafil. In this study, we compared the efficacy of vardenafil and sildenafil in facilitating penile erection in a rabbit model. Penile erections were elicited by submaximal (2.5 or 6 Hz) pelvic nerve stimulation (PNS) repeated every 5 minutes for 30 minutes with or without intravenous (i.v.) administration of vardenafil (1-30 microg/kg) or sildenafil (10-30 microg/kg). Erectile response was assessed by continuously recording intracavernosal pressure (ICP) and systemic arterial pressure (SAP). All data were expressed as a ratio of ICP:SAP. I.v. administration of either PDE 5 inhibitor facilitated PNS-induced erection and increased ICP:SAP in a dose-dependent manner, reaching peak response at approximately 5 minutes. However, the threshold dose at which facilitation of erection occurred was lower for vardenafil (3 microg/kg) than for sildenafil (10 microg/kg). At the 10-microg/kg dose (i.v.), the response duration was significantly greater with vardenafil (169 +/- 23 seconds) than with sildenafil (137 +/- 31 seconds). Direct intracavernosal (i.c.) injection of 1-30 microg/kg vardenafil or sildenafil also caused dose-dependent increases in ICP:SAP in the absence of PNS. Response durations increased in a dose-dependent manner and lasted more than 5 times that of i.v. drug administration coupled with PNS. Irrespective of the route of administration (i.c. or i.v.), at equivalent doses, vardenafil was significantly more efficacious than sildenafil in facilitating pelvic nerve-mediated penile erection and in eliciting erection in the absence of PNS. The increases in ICPs occurred more quickly, were of larger magnitude, and were sustained for longer durations for vardenafil than for sildenafil. On the basis of the biochemical data and physiological responses from this study, further clinical evaluation of vardenafil as treatment for erectile dysfunction is warranted.
ScalParC: a new scalable and efficient parallel classification algorithm for mining large datasets (2002)

We present ScalParC (Scalable Parallel Classifier), a new parallel formulation of a decision tree based classification process. Like other state-of-the-art decision tree classifiers such as SPRINT, ScalParC is suited for handling large datasets. We show that existing parallel formulation of SPRINT is unscalable, whereas ScalParC is shown to be scalable in both runtime and memory requirements. We present the experimental results of classifying up to 6.4 million records on up to 128 processors of Cray T3D, in order to demonstrate the scalable behavior of ScalParC. A key component of ScalParC is the parallel hash table. The proposed parallel hashing paradigm can be used to parallelize other algorithms that require many concurrent updates to a large hash table.
Oligonucleotide-directed self-assembly of proteins: semisynthetic DNA—streptavidin hybrid molecules as connectors for the generation of macroscopic arrays and the construction of supramolecular bioconjugates (1994)

Modified biomolecules were used for the non-covalent assembly of novel bioconjugates. Hybrid molecules were synthesized from short single-stranded DNA and streptavidin by chemical methods using a heterobispecific crosslinker. The covalent attachment of an oligonucleotide moiety to streptavidin provides a specific recognition domain for a complementary nucleic acid sequence, in addition to the four native biotin-binding sites. These bispecific binding capabilities allow the hybrid molecules to serve as versatile connectors in a variety of applications. Bifunctional constructs have been prepared from two complementary hybrid molecules, each previously conjugated to biotinylated immunoglobulin G or alkaline phosphatase. The use of nucleic acid sequences as a template for the formation of an array of proteins is further demonstrated on two size scales. A macroscopic DNA array on a microtiter plate has been transformed into a comparable protein chip. A nano-scale array was made by hybridizing DNA-tagged proteins to specific positions along a RNA or DNA sequence. The generation of supramolecular bioconjugates was shown by quantitative measurements and gel-retardation assays.