gebhart/patrepeval huggingface dataset:
Protein tyrosine phosphorylation and regulation of the receptor for platelet-activating factor in rat Kupffer cells. Effect of sodium vanadate (1992)

Platelet-activating factor (1-O-alkyl-2-acetyl-sn-glycero-3-phosphocholine, AGEPC) and sodium vanadate (a phosphotyrosine phosphatase inhibitor) induced a time- and concentration-dependent increase in phosphotyrosine in several proteins and stimulated prostaglandin (PG) E2 production in cultured rat Kupffer cells. In addition, vanadate induced a decrease in the surface expression of AGEPC receptors and, as a consequence, inhibited AGEPC-stimulated PGE2 production. The vanadate-induced decrease in the surface expression of AGEPC receptors was time- and concentration-dependent and was partially prevented by genistein, a putative tyrosine kinase inhibitor. Upon removal of vanadate from the culture medium and re-incubation of cells in vanadate-free medium, the surface AGEPC receptors were restored within 7 h after the removal of vanadate. Both AGEPC- and vanadate-stimulated PGE2 formation was attenuated by genistein. Thus the present investigation demonstrates that both AGEPC and sodium vanadate stimulate tyrosine phosphorylation of cellular proteins, and vanadate induces a decrease in the number of the surface AGEPC receptors. These results suggest that protein tyrosine phosphorylation may play a role, directly or indirectly, in the regulation of surface expression of AGEPC receptors as well as in PGE2 production in response to vanadate and AGEPC.
Synthesis of Bis(deoxyribonucleoside) Phosphoromorpholidate Derivatives for Oligodeoxyribonucleotide Preparation by Use of a Selective Phosphitylating Reagent (1989)

Abstract Sequence-defined bis(deoxyribonucleoside) phosphoromorpholidate derivatives as stable intermediates to prepare oligodeoxyribonucleotides have been synthesized using morpholinodi(1-tetrazolyl)phosphine as a phosphitylating reagent. The general procedure is composed of following steps (in situ); a) a reaction of 5′-O-protected deoxyribonucleoside with morpholinodi(1-tetrazolyl)phosphine (phosphitylation), b) a reaction of the resulting 5′-O-protected deoxyribonucleoside phosphorobisamidite with the second deoxyribonucleoside (coupling), and c) a nonaqueous oxidation with t-BuOOH (oxidation). In the coupling step, the 5′-O-protected deoxyribonucleoside phosphorobisamidite was selectively reacted with 5′-OH group of the second deoxyribonucleoside, and therefore, a protection of hydroxyl groups of the second deoxyribonucleoside is not necessary. As the resulting P–N bond in the phosphoramidate linkage after oxidation is stable both in acidic and basic conditions, the morpholino function as a phosphoryl protecting group may have many potential use in the synthetic chemistry of oligonucleotide. A thymidine trimer can be obtained in a high yield by extending the present synthetic method.
Treatment of vasospastic disease with prostaglandin E1. (1980)

Prostaglandin E1, a vasodilator and potent inhibitor of platelet aggregation, was administered to 26 patients with severe vasospastic disease of the hands. Patients tolerated infusions well and reported appreciable symptomatic improvement. Five of eight ischaemic ulcers healed in six weeks. Non-invasive studies of blood flow were used to observe haemodynamic changes during and after infusions. The Doppler-derived radial artery pulsatility index fell from 8.8 +/- 0.6 to 4.6 +/0 0.5 (mean +/- SEM), indicating hand vasodilatation. This fall was maintained 24 hours after infusion (5.9 +/- 0.9), but the index had returned to normal values at two weeks. The amplitude of finger pulse volume recordings increased (5.6 +/- 0.7 mm to 23.8 +/- 3.4 mm) and was raised two and six weeks after infusion (13.5 +/- 2.1 mm). Hand temperature measured by infrared radiometry also increased (27.4 +/- 0.7 degrees C to 31.2 +/- 1.2 degrees C). Intensity of digital vasospasm induced by cold water challenge was not objectively affected by prostaglandin E1 despite an increased finger temperature after infusion. Nevertheless, patients reported less frequent and severe attacks. Prostaglandin E1 given by central venous infusion is a safe new vasoactive agent that can produce appreciable symptomatic improvement by increasing digital perfusion, which may last for several weeks after treatment. Further study will define its mode of action and its place in the management of peripheral vascular disease.
Lipoxygenation of arachidonic acid as a source of polymorphonuclear leukocyte chemotactic factors in synovial fluid and tissue in rheumatoid arthritis and spondyloarthritis. (1980)

The predominant lipoxygenase products of arachidonic acid were extracted and purified from synovial fluid and sonicates of synovial tissue of patients with rheumatoid arthritis (RA), spondyloarthritis (SA), or a noninflammatory arthropathy (NIA). The concentration of 5(S),12(R)-dihydroxy-6,8,10-(trans/trans/cis)-14-cis-eicosatetraenoic acid (leukotriene B4) in synovial fluid was elevated significantly in patients with RA and a positive latex test for rheumatoid factor (P < 0.05, n = 14) and in patients with SA (P < 0.05, n = 10), compared with that of subjects with NIA (n = 9). The content of 5(S)-hydroxy-6,8,11,14-eicosatetraenoic acid (5-HETE), but not of leukotriene B4, was elevated significantly in synovial tissue of seven patients with RA in comparison with that of four subjects with NIA (P < 0.05). A single intra-articular injection of corticosteroid significantly lowered the synovial fluid level of leukotriene B4 in six patients with RA. These data suggest an involvement of the potent chemotactic factors 5-HETE and leukotriene B4 in human inflammatory disease.
Tumor suppressor NDRG2 inhibits glycolysis and glutaminolysis in colorectal cancer cells by repressing c-Myc expression (2015)

Cancer cells use glucose and glutamine as the major sources of energy and precursor intermediates, and enhanced glycolysis and glutamimolysis are the major hallmarks of metabolic reprogramming in cancer. Oncogene activation and tumor suppressor gene inactivation alter multiple intracellular signaling pathways that affect glycolysis and glutaminolysis. N-Myc downstream regulated gene 2 (NDRG2) is a tumor suppressor gene inhibiting cancer growth, metastasis and invasion. However, the role and molecular mechanism of NDRG2 in cancer metabolism remains unclear. In this study, we discovered the role of the tumor suppressor gene NDRG2 in aerobic glycolysis and glutaminolysis of cancer cells. NDRG2 inhibited glucose consumption and lactate production, glutamine consumption and glutamate production in colorectal cancer cells. Analysis of glucose transporters and the catalytic enzymes involved in glycolysis revealed that glucose transporter 1 (GLUT1), hexokinase 2 (HK2), pyruvate kinase M2 isoform (PKM2) and lactate dehydrogenase A (LDHA) was significantly suppressed by NDRG2. Analysis of glutamine transporter and the catalytic enzymes involved in glutaminolysis revealed that glutamine transporter ASC amino-acid transporter 2 (ASCT2) and glutaminase 1 (GLS1) was also significantly suppressed by NDRG2. Transcription factor c-Myc mediated inhibition of glycolysis and glutaminolysis by NDRG2. More importantly, NDRG2 inhibited the expression of c-Myc by suppressing the expression of β-catenin, which can transcriptionally activate C-MYC gene in nucleus. In addition, the growth and proliferation of colorectal cancer cells were suppressed significantly by NDRG2 through inhibition of glycolysis and glutaminolysis. Taken together, these findings indicate that NDRG2 functions as an essential regulator in glycolysis and glutaminolysis via repression of c-Myc, and acts as a suppressor of carcinogenesis through coordinately targeting glucose and glutamine transporter, multiple catalytic enzymes involved in glycolysis and glutaminolysis, which fuels the bioenergy and biomaterials needed for cancer proliferation and progress.
PCR primers that allow intergeneric differentiation of ascomycetes and their application to Verticillium spp (1994)

A pair of conserved PCR primers, designated NMS1 and NMS2, that amplify a region in the mitochondrial small rRNA gene region were designed for fungi belonging to the class Ascomycetes. These primers were tested with members of eight fungal genera (Aspergillus, Fusarium, Magnaporthe, Mycospharella, Neurospora, Saccharomyces, Sclerotinia, Verticillium) and 10 Verticillium species (Verticillium albo-atrum, Verticillium chlamydosporium, Verticillium cinnebarium, Verticillium dahliae, Verticillium fungicola, Verticillium lecanii, Verticillium lateritium, Verticillium nigrescens, Verticillium psaliotae, and Verticillium tricorpus). The primers were also tested with 35 isolates of V. dahliae obtained from diverse geographic areas and diverse hosts. The results of a restriction fragment length polymorphism analysis of the region amplified by the primers differentiated the genera examined and the results of a DNA sequence analysis of the amplified region differentiated the Verticillium species. Two Fusarium species were also differentiated by the results of the restriction fragment length polymorphism analysis. On the basis of the nucleotide sequences of the amplified regions, we obtained a pair of PCR primers that could be used to differentiate V. dahliae from the other fungal isolates tested, including V. albo-atrum, a closely related plant-pathogenic species. The V. dahliae-specific PCR primer may aid in more rapid and specific detection of the pathogen directly in plant and/or soil samples. PCR primers NMS1 and NMS2 may be used as potential mitochondrial markers for studying fungal cytoplasmic inheritance of ascomycetes and for identifying DNA probes that are informative at or below the genus level.
Structural defects working as active oxygen-reduction sites in partially oxidized Ta-carbonitride core-shell particles probed by using surface-sensitive conversion-electron-yield x-ray absorption spectroscopy (2010)

We analyzed the local structure of the surface Ta-oxide phase of TaCN/Ta2O5 core-shell particles that have a high oxygen reduction activity by using surface-sensitive conversion-electron-yield x-ray absorption spectroscopy, suppressing the contribution from the TaCN cores. The radial structure analysis revealed that the catalytically-active Ta2O5 phase in the TaCN/Ta2O5 particle surface contains oxygen-vacancy defects with shorter Ta–O bonds leading to the slight expansion of the first Ta–O shell. Such oxygen defects are likely responsible for the oxygen reduction capability by creating electronically favorable oxygen adsorption sites and electron conduction pathways.
A Sustainable Future, If We Pay Up Front (2007)

The oil shocks of the 1970s sparked a short-lived golden age of energy R&D. Today9s energy concerns haven9t caused a similar bonanza, yet. (Read more.)
Are blood flow and lipolysis in subcutaneous adipose tissue influenced by contractions in adjacent muscles in humans? (2006)

Aerobic exercise increases whole body adipose tissue lipolysis, but is lipolysis higher in subcutaneous adipose tissue (SCAT) adjacent to contracting muscles than in SCAT adjacent to resting muscles? Ten healthy, overnight-fasted males performed one-legged knee extension exercise at 25% of maximal workload (W(max)) for 30 min followed by exercise at 55% W(max) for 120 min with the other leg and finally exercised at 85% W(max) for 30 min with the first leg. Subjects rested for 30 min between exercise periods. Femoral SCAT blood flow was estimated from washout of (133)Xe, and lipolysis was calculated from femoral SCAT interstitial and arterial glycerol concentrations and blood flow. In general, blood flow and lipolysis were higher in femoral SCAT adjacent to contracting than adjacent to resting muscle (time 15-30 min; blood flow: 25% W(max) 6.6 +/- 1.0 vs. 3.9 +/- 0.8 ml x 100 g(-1) x min(-1), P < 0.05; 55% W(max) 7.3 +/- 0.6 vs. 5.0 +/- 0.6 ml x 100 g(-1) x min(-1), P < 0.05; 85% W(max) 6.6 +/- 1.3 vs. 5.9 +/- 0.7 ml x 100 g(-1) x min(-1), P > 0.05; lipolysis: 25% W(max) 102 +/- 19 vs. 55 +/- 14 nmol x 100 g(-1) x min(-1), P = 0.06; 55% W(max) 86 +/- 11 vs. 50 +/- 20 nmol x 100 g(-1) x min(-1), P > 0.05; 85% W(max) 88 +/- 31 vs. -9 +/- 25 nmol x 100 g(-1) x min(-1), P < 0.05). In conclusion, blood flow and lipolysis are generally higher in SCAT adjacent to contracting than adjacent to resting muscle irrespective of exercise intensity. Thus specific exercises can induce "spot lipolysis" in adipose tissue.
Bacterial lipopolysaccharide priming of P388D1 macrophage-like cells for enhanced arachidonic acid metabolism. Platelet-activating factor receptor activation and regulation of phospholipase A2. (1990)

P388D1 cells are stimulated by platelet-activating factor (PAF) to release arachidonic acid metabolites (Lister, M. D., Glaser, K. B., Ulevitch, R. J., and Dennis, E. A. (1989) J. Biol. Chem. 264, 8520-8528). While the release of prostaglandin E2 (PGE2) in response to PAF is only two to three times the constitutive PGE2 production, bacterial lipopolysaccharides (LPS) are able to prime P388D1 cells for enhanced arachidonic metabolism, increasing PAF-stimulating PGE2 production to 9-12 times the constitutive PGE2 production. The extent and rate of [3H]arachidonic acid release from prelabeled P388D1 cells are also increased in primed cells relative to unprimed cells in response to PAF-stimulation. LPS from either Salmonella Re595 or Escherichia coli 0111:B4 prime P388D1 cells in a concentration-dependent manner but have themselves no ability to stimulate arachidonic acid metabolism. LPS priming is sensitive to inhibition by actinomycin D, while primed PAF-stimulation of PGE2 production is blocked by cyclohexamide which implicates a protein which is rapidly turning over. Primed PAF stimulation is also inhibited by the phospholipase A2 inhibitor manoalogue and the tyrosine-specific protein kinase inhibitor genistein, but not by the kinase inhibitor H-7. These results suggest that priming amplifies signal transduction pathways for PAF, which results in increased arachidonate availability. The multiple levels at which primed PAF-stimulated PGE2 production appears to be regulated are discussed.
A versatile statistical analysis algorithm to detect genome copy number variation (2004)

We have developed a versatile statistical analysis algorithm for the detection of genomic aberrations in human cancer cell lines. The algorithm analyzes genomic data obtained from a variety of array technologies, such as oligonucleotide array, bacterial artificial chromosome array, or array-based comparative genomic hybridization, that operate by hybridizing with genomic material obtained from cancer and normal cells and allow detection of regions of the genome with altered copy number. The number of probes (i.e., resolution), the amount of uncharacterized noise per probe, and the severity of chromosomal aberrations per chromosomal region may vary with the underlying technology, biological sample, and sample preparation. Constrained by these uncertainties, our algorithm aims at robustness by using a priorless maximum a posteriori estimator and at efficiency by a dynamic programming implementation. We illustrate these characteristics of our algorithm by applying it to data obtained from representational oligonucleotide microarray analysis and array-based comparative genomic hybridization technology as well as to synthetic data obtained from an artificial model whose properties can be varied computationally. The algorithm can combine data from multiple sources and thus facilitate the discovery of genes and markers important in cancer, as well as the discovery of loci important in inherited genetic disease.
Factors Regulating the Cytotoxic Activity of the Human Natural Killer Cell Line, NK-92 (2001)

NK-92, a highly cytotoxic, interleukin-2 (IL-2)-dependent human natural killer (NK) cell line, has been of interest for basic and translational research. We report on a comprehensive analysis of NK-92 for factors implicated in NK cytotoxicity to elucidate factors underlying NK-92's high cytolytic activity and target range. Thus, we hope to develop a method to identify patients best suited to NK-92 immunotherapy. In addition, as a model system, we hope to increase understanding of the basis for the elevated activity exhibited by activated NK (ANK) cells. NK-92 exhibits an unusual receptor expression profile, expressing a relatively large number of activating (NKp30, NKp46, 2B4, NKGD, E, CD28) receptors. Conversely, it expresses few inhibitory receptors (NKGA/B, low levels of KIR2DL4, ILT-2), lacking most of the killer inhibitory receptors (KIRs) clonally expressed on normal NK cells. In addition, NK-92 expresses high levels of molecules involved in the perforin-granzyme cytolytic pathway as well as additional cytotoxic effector molecules including tumor necrosis factor (TNF)-superfamily members FasL, TRAIL, TWEAK, TNF-alpha, indicating the ability to kill via alternative mechanisms. NK-92 also expresses other molecules implicated immune effector cell regulation (CD80, CD86, CD40L, TRANCE) whose relevance in NK killing is unclear. This study provides initial data to develop a method to identify NK-92 susceptible cells (cells expressing ligands for NK-92 activating receptors ie CD48 for 2B4 and CD80/86 for CD28). Furthermore, this work suggests mechanisms that may contribute to ANK cell activity, including modulation of receptor expression to favor activation, up-regulation of cytotoxic effector molecules, and acquisition of new cytolytic pathways.
Hippocampal place cells construct reward related sequences through unexplored space (2015)

Dominant theories of hippocampal function propose that place cell representations are formed during an animal's first encounter with a novel environment and are subsequently replayed during off-line states to support consolidation and future behaviour. Here we report that viewing the delivery of food to an unvisited portion of an environment leads to off-line pre-activation of place cells sequences corresponding to that space. Such 'preplay' was not observed for an unrewarded but otherwise similar portion of the environment. These results suggest that a hippocampal representation of a visible, yet unexplored environment can be formed if the environment is of motivational relevance to the animal. We hypothesise such goal-biased preplay may support preparation for future experiences in novel environments.
Restenosis after percutaneous angioplasty: the role of vascular inflammation (2005)

Restenosis after endovascular treatment of atherosclerotic lesions in the peripheral, cerebrovascular, and coronary circulation is the major drawback of this minimally invasive technique. Although certain advances have been made during recent years to improve patency rates after percutaneous angioplasty, restenosis remains a challenging clinical problem. Understanding factors that contribute to the pathophysiology of late lumen loss is an effective strategy to improving patients' postangioplasty outcome. Vascular inflammation after balloon angioplasty or stent implantation has been identified as a cornerstone of the restenotic process, and several markers of inflammation have been referred to as potential predictors of outcome. This article reviews recent findings on the issue of inflammation and restenosis after percutaneous angioplasty with special attention given to the role of inflammatory parameters as markers for the restenosis risk in the peripheral vessel area.
SIMD architectures and algorithms for image processing and computer vision (1989)

The authors present a critical survey of parallel architectures and algorithms for image processing. The emphasis is on single-instruction-stream, multiple-data-stream (SIMD) computers with nonshared memory. A number of parallel architectures are discussed and compared. They fall into three categories: mesh-connected computers, pyramid computers, and hypercube and related computers. A set of seven image processing and computer vision tasks is selected, and algorithms for performing these seven tasks on each of the three categories of computers are given. All of the algorithms are evaluated using asymptotic (big-Oh) analysis. An analysis of parallel algorithms for several-pixel level, intermediate level, and high-level image processing tasks is presented. The effects of architectural decisions on algorithms design are examined in detail.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Evidence and Effects of Wrench Faulting, North Central Gulf Coast Region (1995)

ABSTRACT North central Gulf Coast Middle Mesozoic zones of crustal weakness, caused by transform faulting associated with plate separation and rifting, became ideal loci for subsequent tectonic adjustments. Several lines of evidence - manifested in wrench faulting - point toward the existence of such adjustments occurring in the Upper Jurassic, Cretaceous, and Tertiary strata of this area. Eight lines of evidence suggest that there are at least four zones of faulting in the region that have been affected by lateral (and vertical) fault movements and associated extension fracturing. Isopach maps, en echelon fault/fold patterns, location of time-specific igneous activity, offset basement features, anomalous saltwater incursions into freshwater aquifers, offset surface geomorphic features, surface lineaments, and regional hydrocarbon migration patterns are all suggestive of dominant lateral motion along the affected zones in the subsurface and/or surface. Two main results of the region's wrench faulting are evident in (1) the development of vertical pathways or conduits facilitating hydrocarbon migration from deep, thermally mature source rocks to shallower reservoirs located in non-mature source rock zones; and (2) the development of extension fractures that enhance reservoir porosity. Both results have created the potential for increasing hydrocarbon source volumes available for migration and reservoiring.
First digital optical switch based on InP/GaInAsP double heterostructure waveguides (1991)

A Y-junction digital optical switch based on InP/GaInAsP has been realised and operated using either carrier injection or carrier depletion. The switch functions with both TE and TM polarised light. In the case of current injection, 30 mA is enough to obtain a crosstalk up to 20 dB for TM polarisation and 10 dB for TE polarisation.