gebhart/patrepeval huggingface dataset:
Detection and Initial Characterization of Novel Capsular Polysaccharide among Diverse Campylobacter jejuni Strains Using Alcian Blue Dye (2001)

We have recently demonstrated that most strains of Campylobacter jejuni produce capsular polysaccharide (CPS), which can be detected by immunoblotting with homologous Penner antisera on polyvinylidene difluoride membranes (A. V. Karlyshev, D. Linton, N. A. Gregson, A. J. Lastovica, and B. W. Wren, Mol. Microbiol. 35:529-541, 2000). In this report, we describe a universal and rapid staining procedure using Alcian blue for C. jejuni CPS, which does not rely on the availability of antisera and identifies CPS in untypeable strains. Furthermore, Alcian blue staining identified CPS in its lipid-free form directly on Tricine gels, and we demonstrate that CPS is thermostable and is accumulated in the culture supernatant in a lipid-free form. The identification of a newly described CPS and its lipid-free form in C. jejuni should prove invaluable in studying the pathogenesis and epidemiology of this important pathogen.
Late-Onset Hypogonadism Syndrome and Lower Urinary Tract Symptoms (2011)

Androgen replacement therapy (ART) is a widely accepted form of treatment worldwide for aging men with late-onset hypogonadism (LOH) syndrome. Concurrent with the progressive decline in testosterone from middle age, there is a gradual increase in prostate volume, reflecting the development of benign prostatic hyperplasia (BPH). Prostate growth is dependent on the presence of androgens, and conversely, antiandrogen agents or orchidectomy can decrease prostate volume in patients with BPH. Thus, it is important to investigate whether ART could have any negative effects on prostatic disease or lower urinary tract symptoms (LUTS). Although only limited amounts of information on the correlations between androgen levels in aging men and clinical manifestations of LUTS are available, a few recent studies have suggested that testosterone levels may have some beneficial effects on various urinary functions in men. Androgen receptors are found in the urothelium, urinary bladder, prostate, and urethra, and testosterone could have an impact on the autonomic nervous system, bladder smooth muscle differentiation, nitric oxide synthase, phosphodiesterase-5 and Rho/Rho-kinase activities, and pelvic blood flow. In addition, some previous studies demonstrated that ART had little effect on LUTS or urinary function in aging men with LOH syndrome. Furthermore, some recent randomized controlled trials indicated that short-term ART may be effective in the improvement of LUTS in hypogonadal men with mild BPH. However, only limited information is available regarding the effects of longer-term ART or the safety of ART in men with severe BPH and LUTS, and further studies are required to reach more definitive conclusions.
Differential regulation of Na+/H+exchange isoform activities by enteropathogenicE. coliin human intestinal epithelial cells (2004)

Enteropathogenic Escherichia coli (EPEC) is an important human intestinal foodborne pathogen associated with diarrhea, especially in infants and young children. Although EPEC produces characteristic attaching and effacing lesions and loss of microvilli, the pathophysiology of EPEC-associated diarrhea, particularly during early infection, remains elusive. The present studies were designed to examine the direct effects of EPEC infection on intestinal absorption via Na(+)/H(+) exchanger (NHE) isoforms. Caco-2 cells were infected with EPEC strain E2348/69 or nonpathogenic E. coli HB101 for a period of 60 to 120 min. Total NHE activity was significantly increased at 60 min, reaching approximately threefold increase after 90 min of EPEC infection. Similar findings were seen in HT-29 cells and T84 cells indicating that the response was not cell-line specific. Most surprising was the differential regulation of NHE2 and NHE3 by EPEC. Marked activation of NHE2 (300%) occurred, whereas significant inhibition ( approximately 50%) of NHE3 activity was induced. The activity of basolateral isoform NHE1 was also significantly increased in response to EPEC infection. Mutations that disrupted the type III secretion system (TTSS) ablated the effect of EPEC on the activity of both NHE2 and NHE3. These results suggest that EPEC, through a TTSS-dependent mechanism, exerts differential effects on NHE isoform activity in intestinal epithelial cells. Additionally, NHEs do not appear to play any role in EPEC-mediated inflammation, because the NHE inhibitors amiloride and 5-(N-ethyl-N-isopropyl)amiloride did not prevent EPEC-mediated IkappaBalpha degradation.
Functional characterization of human recombinant apolipoprotein AIV produced in Escherichia coli (1991)

Apolipoprotein AIV (apoAIV), a protein which is known to activate the enzyme lecithin: cholesterol acyltransferase, to bind to apoAI/AII receptor sites and also to promote cholesterol efflux from adipose cells, may play an important role in reverse cholesterol transport. In this report, the high-level production of soluble recombinant mature human apoAIV (isoform 1) in Escherichia coli is described. The recombinant protein was purified by avoiding lipid extraction or denaturation. The apoAIV preparation was analysed by its reactivity with antibodies raised against human apoAIV, SDS-gel electrophoresis, isoelectric focusing and N-terminal sequencing. The purified recombinant protein retains an extra methionine at the N-terminus. Purified recombinant and natural apoAIV proteins were indistinguishable with regard to their denaturation properties, thermo-stability or their fluorescence emission properties in the presence of various quantities of a quenching agent. Complexes of ApoAIV with L-alpha-dimyristoyl-glycerophosphocholine (Myr2GroPCho), glycerophosphocholine (GroPCho), or L-alpha-1-palmitoyl-2-oleoylglycerophosphocholine (PamOleGroPCho) prepared from plasmatic and from recombinant apoAIV proteins have similar densities as revealed by analytical centrifugation. They also share the same cofactor properties for the lecithin:cholesterol acyltransferase reaction. Recombinant apoAIV complex with Myr2GroPCho was also able to bind to the same apoAI/AII receptor sites and to promote cholesterol efflux to an equal extent from adipose cells. It is concluded that the recombinant protein is functionally identical to the plasmatic apoAIV and may therefore be very useful in helping to elucidate the physiological role of apoAIV.
Flexible access control using IPC redirection (2003)

We present a mechanism for inter-process communication (IPC) redirection that enables efficient and flexible access control for micro-kernel systems. In such systems, services are implemented at user level, so IPC is the only means of communication between them. Thus, the system must be able to mediate IPCs to enforce its access control policy. Such mediation must enable enforcement of security policy with as little performance overhead as possible, but current mechanisms either: (1) place significant access control functionality in the kernel which increases IPC cost or (2) are static and require more IPCs than necessary to enforce access control. We define an IPC redirection mechanism that makes two improvements: (1) it removes the management of redirection policy from the kernel, so access control enforcement can be implemented outside the kernel; and (2) it separates the notion of who controls the redirection policy from the redirections themselves, so redirections can be configured arbitrarily and dynamically. We define our redirection mechanism, demonstrate its use, and examine possible efficient implementations.
Inheritance of Percent Total Alkaloids in Nicotiana tabacum L. (1969)

Journal Article Inheritance of Percent Total Alkaloids in Nicotiana tabacum L.: Populations derived from crosses of low alkaloid lines with burley and flue-cured varieties Get access PAUL D. LEGG, PAUL D. LEGG The authors are research geneticist, Crops Research Division, Agricultural Research Service, U. S. Department of Agriculture, Lexington, Kentucky; leader Tobacco Breeding and Disease Investigations, Crops Research Division, Agricultural Research Service, U. S. Department of Agriculture, Oxford, North Carolina; and assistant professor of agronomy, University of Kentucky, respectively Search for other works by this author on: Oxford Academic PubMed Google Scholar JAMES F. CHAPLIN, JAMES F. CHAPLIN The authors are research geneticist, Crops Research Division, Agricultural Research Service, U. S. Department of Agriculture, Lexington, Kentucky; leader Tobacco Breeding and Disease Investigations, Crops Research Division, Agricultural Research Service, U. S. Department of Agriculture, Oxford, North Carolina; and assistant professor of agronomy, University of Kentucky, respectively Search for other works by this author on: Oxford Academic PubMed Google Scholar GLENN B. COLLINS GLENN B. COLLINS The authors are research geneticist, Crops Research Division, Agricultural Research Service, U. S. Department of Agriculture, Lexington, Kentucky; leader Tobacco Breeding and Disease Investigations, Crops Research Division, Agricultural Research Service, U. S. Department of Agriculture, Oxford, North Carolina; and assistant professor of agronomy, University of Kentucky, respectively Search for other works by this author on: Oxford Academic PubMed Google Scholar Journal of Heredity, Volume 60, Issue 4, July 1969, Pages 213–217, https://doi.org/10.1093/oxfordjournals.jhered.a107974 Published: 01 July 1969
Structure and Application of Various Saran-Based Carbons to Aqueous Electric Double-Layer Capacitors (2002)

A new application to electric double-layer capacitor fields of Saran® resin using samples obtained directly from the production line was tried and investigated. These samples are prepared through a simple process by only heat-treatment with no additional activation process. Homogeneous polyvinylidenechloride (PVDC) based carbon heat-treated at 700°C showed a maximum specific capacitance of 92.5 F/g at 1 mA/cm2 of current density (which is obtained by a unit cell system by two electrodes, equivalent to 370 F/g in a conventional three-electrode system). Other blended samples show a better capacitance at high current density over 300 mA/cm2 than that of homogeneous PVDC, although the blends show poor characteristics at relatively low discharge current density. To clarify the relation between the pore size distribution and the capacitance, image analysis of transmission electron microscopy photographs was performed. The pore size distribution of each Saran resin is shifted according to the kind of blended polymer. The pore size distribution of Saran-based carbon is controllable by mixing with a copolymer. The simulation result of the electrolyte ion was used to clarify the capacitance behavior. © 2002 The Electrochemical Society. All rights reserved.
α5β1 Integrin Protects Intestinal Epithelial Cells from Apoptosis through a Phosphatidylinositol 3-Kinase and Protein Kinase B–dependent Pathway (2000)

Renewal of the gastrointestinal epithelium involves a coordinated process of terminal differentiation and programmed cell death. Integrins have been implicated in the control of apoptotic processes in various cell types. Here we examine the role of integrins in the regulation of apoptosis in gastrointestinal epithelial cells with the use of a rat small intestinal epithelial cell line (RIE1) as a model. Overexpression of the integrin alpha5 subunit in RIE1 cells conferred protection against several proapoptotic stimuli. In contrast, overexpression of the integrin alpha2 subunit had no effect on cell survival. The antiapoptotic effect of the alpha5 subunit was partially retained by a mutated version that had a truncation of the cytoplasmic domain. The antiapoptotic effects of the full-length or truncated alpha5 subunit were reversed upon treatment with inhibitors of phosphatidylinositol 3-kinase (PI-3-kinase), suggesting that the alpha5beta1 integrin might interact with the PI-3-kinase/Akt survival pathway. When cells overexpressing alpha5 were allowed to adhere to fibronectin, there was a moderate activation of protein kinase B (PKB)/Akt, whereas no such effect was seen in alpha2-overexpressing cells adhering to collagen. Furthermore, in cells overexpressing alpha5 and adhering to fibronectin, there was a dramatic enhancement of the ability of growth factors to stimulate PKB/Akt; again, this was not seen in cells overexpressing alpha2 subunit and adhering to collagen or fibronectin. Expression of a dominant negative version of PKB/Akt in RIE cells blocked to ability of alpha5 to enhance cell survival. Thus, the alpha5beta1 integrin seems to protect intestinal epithelial cells against proapoptotic stimuli by selectively enhancing the activity of the PI-3-kinase/Akt survival pathway.
GPS-based vessel position monitoring and display system (1990)

A description is given of the first fully operational, GPS (Global Positioning System) Loran-based vessel monitoring system. The system's monitoring workstation, communications solutions, and variety of onboard navigation systems provide an integrated capability for the marine fleet operator and are the basis of consideration for large-scale systems which might be implemented for hazardous cargo or oil and gas product ocean transport. Issues regarding the implementation of GPS-based vessel tracking are discussed, and the design of the system is described. The vessel navigation and position reporting suite, communication of data, and vessel monitoring system applications are examined.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Different schematic eyes and their accuracy to the in vivo eye: a quantitative comparison study (2007)

Current ophthalmic technology allows the manipulation of eye components, such as anterior cornea and lens, of the human eye with a considerable precision and customization. This technology opens up the possibility of exploiting some characteristics of the eye in order to improve the methods of correcting optical aberrations. Moreover, product development and research for the eye-care professional has reached very high standards, since there is nowadays software available to design and simulate practically any mechanical or optical characteristic of the product, even before it is thrown into production line. Although quite similar in the general form, different human eye models simulate the image formation by considering different property combinations in the constitutive elements of the eye structure (such as refraction index and surface curvatures), producing retinal images that resemble very closely those of the biological eye. Using optical design software, we have implemented a simulation of 5 well-known schematic eyes available in the literature. These models were the Helmholtz-Laurance, Gullstrand, Emsley, Greivenkamp and Liou & Brennan. The optical performance of these different models was compared using different quantitative optical quality parameters. The model of Liou and Brennan, contains features of the biological eye that were not considered in previous models, as the distribution of a gradient refraction index and a decentered pupil. Furthermore, it has great reliability since it takes into account the mean value of empirical measurements of the in vivo eye in order to define size and parameters such as anterior and posterior curvature of cornea, lens, axial length, etc. Comparisons between the MTF (Modulation Transfer Function), spot diagrams and ray fan showed the difference in image quality between eye models, and the Strehl Ratio was also used as a parameter of comparison. A careful comparison between the different models showed that the first four schematic eyes have better optical quality than what is expected for the general and healthy emmetropic in vivo eye. Liou and Brennan schematic eye is the one that most closely resembles the in vivo biological eye. Therefore, in applications, such as research or product development for customized vision correction, which must consider optical properties intrinsic to the biological eye, we recommend this latter model; for applications that do not require refraction-limited performance, most of the other models should be a good approximation.
The carboxy terminus of human immunodeficiency virus type 1 gp160 limits its proteolytic processing and transport in transfected cell lines (1990)

Mutagenesis of the transmembrane domain and cytoplasmic tail of human immunodeficiency virus type 1 envelope glycoprotein gp160 revealed that its intracellular transport and processing in transfected cell lines were modulated by a functional domain included in the carboxy-terminal sequence consisting of residues 751 to 856.
Large Scale Identification of Proteins, Mucins, and Their O-Glycosylation in the Endocervical Mucus during the Menstrual Cycle (2007)

The mucus filling the human cervical opening blocks the entry to the uterus, but this has to be relative and allow for the sperm to penetrate at ovulation. We studied this mucus, its content of proteins and mucins, and the mucin O-glycosylation in cervical secretions before, during, and after ovulation. Cervical mucosal secretions from 12 subjects were collected, reduced-alkylated, separated with polyacrylamide or agarose/polyacrylamide gel electrophoresis, and stained with silver, Alcian blue, or Coomassie Blue stain. Protein and mucin bands from before and during ovulation were digested and subsequently analyzed by nano-LC-FT-ICR MS and MS/MS. We identified 194 proteins after searches against the NCBI non-redundant protein database and an in-house mucin database. Three gel-forming (MUC5B, MUC5AC, and MUC6) and two transmembrane mucins (MUC16 and MUC1) were identified. For the analysis of mucin O-glycosylation, separated mucins from six individuals were blotted to PVDF membranes, and the O-glycans were released by reductive beta-elimination and analyzed with capillary HPLC-MS and -MS/MS. At least 50 neutral, sialic acid-, and sulfate-containing oligosaccharides were found. An increase of GlcNAc-6GalNAcol Core 2 structures and a relative decrease of NeuAc residues are typical for ovulation, and NeuAc-6GalNAcol and NeuAc-3Gal- epitopes are typical for the non-ovulatory phases. The cervical mucus at ovulation is thus characterized by a relative increase in neutral fucosylated oligosaccharides. This comprehensive characterization of the mucus during the menstrual cycle suggests mucin glycosylation as the major alteration at ovulation, but the relation to the altered physicochemical properties and sperm penetrability is still not understood.
Effective Nonliving Vaccine Against Experimental Tuberculosis in Mice (1966)

Ribi, Edgar (Rocky Mountain Laboratory, Hamilton, Mont.), Carl Larson, William Wicht, Robert List, and Granville Goode. Effective nonliving vaccine against experimental tuberculosis in mice. J. Bacteriol. 91:975-983. 1966.-Antituberculosis vaccines were prepared in one of three manners: lyophilized BCG suspended in light mineral oil was disrupted in a Sorvall pressure cell and the "oil disruption product" was collected by centrifugation; BCG was disrupted in water, lyophilized, and worked into a paste with a small amount of oil (about 0.16 ml per 50 mg); BCG was disrupted in water, and the cell wall fraction was isolated, lyophilized, and prepared in an oil paste. These vaccines were suspended in Tween-saline to a concentration of 5 mg/ml and heated at 65 C for 30 min. In protection tests based on pulmonary infection with Mycobacterium tuberculosis H37Rv, the median number of virulent organisms in lung tissue of mice immunized with a few hundred micrograms of these three vaccines was 3 to 4 logs lower than in unvaccinated control mice. A similar dose of viable BCG standard vaccine reduced the lung count 1 to 2 logs below the controls. Protection afforded by nonviable, whole BCG, with or without oil, was of only borderline significance. Since oil-treated fractions containing cell walls produced effective immunity, while the oil-treated protoplasm or whole cells were not active, the protective antigen appeared to be an inner component of the cell wall, exposed when the cell was disrupted, and activated by oil. Extraction of oil from immunogenic disruption products resulted in loss of ability of the products to confer protection against the aerosol challenge, whereas high protection against the conventional challenge by intravenous infection with up to 1.4 x 10(8) cells of M. tuberculosis H37Rv was retained. Retreatment with oil of these nonimmunogenic products restored the immunogenicity if the oil was applied to dried products. The consistent finding that moisture interferes with the enhancement of the vaccine potency by oil suggested that such enhancement may not be the same as that ordinarily produced by water-in-oil emulsions.
The secret second life of an innocent chaperone: the story of CD74 and B cell/chronic lymphocytic leukemia cell survival (2011)

This review deals with the cytokine macrophage migration inhibitory factor (MIF) and its receptor, CD74. MIF and CD74 have been shown to regulate peripheral B cell survival and were associated with tumor progression and metastasis. CD74 expression has been suggested to serve as a prognostic factor in many cancers, with higher relative expression of CD74 behaving as a marker of tumor progression. In chronic lymphocytic leukemia (CLL) cells, binding of MIF to CD74 induces nuclear factor-κB (NF-κB) activation and up-regulation of TAp63 expression, resulting in the secretion of interleukin 8 (IL-8), which in turn promotes cell survival. In addition, TAp63 expression elevates expression of the integrin VLA-4, particularly during the advanced stage of the disease. Blocking of CD74, TAp63, or VLA-4 inhibits the in vivo homing of CLL cells to the BM. Thus, CD74 and its target genes, TAp63 and VLA-4, facilitate migration of CLL cells back to the BM, where they interact with the supportive BM environment that helps rescue them from apoptosis. These results are expected to pave the way toward novel therapeutic strategies aimed at interrupting this survival pathway. One such agent, the monocolonal antibody milatuzumab directed at CD74, is already being studied in early clinical trials.
Fibrin Glue: A Review of its Preparation, Efficacy, and Adverse Effects as a Topical Hemostat (1988)

Fibrin glue is composed of two separate solutions of fibrinogen and thrombin. When mixed together, these agents mimic the last stages of the clotting cascade to form a fibrin clot. Fibrin glue is available in Europe but is not commercially available in the U.S.; therefore, investigators have extemporaneously compounded their own fibrin glue. Fibrinogen can be obtained from pooled, single-donor, and autologous blood donors and is usually isolated by the process of cryoprecipitation. The thrombin component is generally derived from commercial bovine sources. Some investigators have added calcium chloride and/or antifibrinolytics (i.e., aminocaproic acid, aprotinin) to their preparations. Fibrin glue can be applied using a double-barrel syringe or by spray application. Although fibrin glue has been used in a variety of surgical procedures, it has been especially useful in heparinized patients undergoing cardiovascular procedures requiring extracorporeal circulation, as it does not require an intact hemostatic system to be effective. Fibrin glue also has been evaluated in presealing woven or knitted Dacron vascular grafts. The major drawback to its use is the risk of transmitted serological disease from pooled and single-donor blood donors. The safest preparations use the patient's own blood to prepare fibrin glue. Overall, fibrin glue is a useful adjunct to other methods to control bleeding in selected surgical patients.