gebhart/patrepeval huggingface dataset:
The surface energies of cation substituted Laponite (1993)

Abstract Laponite RD forms stable, coherent films which adhere strongly to glass slides. Such films are capable of supporting liquid drops allowing the direct measurement of contact angles for five liquids of which, two were apolar (0:-bromonaphthalene and diiodomethane) and three were polar (water, formamide, glycerol); surface tension components and parameters (γ Lw , γ ⊕ and γ ⊖ ) were determined by solving the Young equation. These determinations were made for homoionic samples saturated with Li, Na, K, Rb, Cs, Mg, Ca, Sr, Ba and NH 4 as well as the natural material. Whereas the values of γ Lw (the apolar Lifshitz-van der Waals component) varied only within narrow limits (41-44 mJ/m 2 ), the Lewis base parameter varied comparatively widely (24-41 mJ/m 2 ). The Lewis acid parameter was small and relatively constant (1·3-3·0 mJ/m 2 ). The variation of γ ⊖ as a function of the exchangeable cation suggests that the divalent cations are shielded from the silicate surface by the water molecules of their sphere of hydration, whereas the monovalent cations are in direct contact with the oxygen atoms of the silicate surface. Furthermore, the divalent cations may screen the Lewis base sites to a greater degree than do the monovalent cations. Lithium behaves anomalously and this may indicate that it physically enters into the ditrigonal hole in the silicate layer.
Amino acid sequence of copper-zinc superoxide dismutase from horse liver. (1981)

The complete amino acid sequence of copper-zinc superoxide dismutase from horse liver is reported. The molecule consists of 153 amino acids and has a Mr = 16,000. The primary structure was determined by automated and manual sequence analysis on fragments produced by cleavage of the S-carboxymethylated protein with cyanogen bromide and on peptides obtained by digestion with trypsin, thermolysin, Staphylococcus aureus protease, or subtilisin. The protein is devoid of tryptophan and tyrosine and displays an acetylated NH2 terminus. Comparison of its primary structure with the known sequences of copper-zinc superoxide dismutases from bovine and human erythrocytes and from yeast reveals a high degree of sequence homology among the four enzymes. This is especially borne out in the regions containing the amino acid residues involved in the metal binding and the half-cystine residues forming the intramolecular disulfide bridge. The striking conservation of the preponderant glycine residues known to be important for the pronounced protein folding in bovine erythrocyte superoxide dismutase suggests similar three-dimensional structures for human erythrocyte, horse liver, and yeast copper-zinc superoxide dismutases.
Synthesis of Heterobimetallic RuMn Complexes and the Coupling Reactions of Epoxides with Carbon Dioxide Catalyzed by these Complexes (2005)

The heterobimetallic complexes [(eta5-C5H5)Ru(CO)(mu-dppm)Mn(CO)4] and [(eta5-C5Me5)Ru(mu-dppm)(mu-CO)2Mn(CO)3] (dppm = bis-diphenylphosphinomethane) have been prepared by reacting the hydridic complexes [(eta5-C5H5)Ru(dppm)H] and [(eta5-C5Me5)Ru(dppm)H], respectively, with the protonic [HMn(CO)5] complex. The bimetallic complexes can also be synthesized through metathetical reactions between [(eta5-C5R5)Ru(dppm)Cl] (R = H or Me) and Li+[Mn(CO)5]-. Although the complexes fail to catalyze the hydrogenation of CO2 to formic acid, they catalyze the coupling reactions of epoxides with carbon dioxide to yield cyclic carbonates. Two possible reaction pathways for the coupling reactions have been proposed. Both routes begin with heterolytic cleavage of the RuMn bond and coordination of an epoxide molecule to the Lewis acidic ruthenium center. In Route I, the Lewis basic manganese center activates the CO2 by forming the metallocarboxylate anion which then ring-opens the epoxide; subsequent ring-closure gives the cyclic carbonate. In Route II, the nucleophilic manganese center ring-opens the ruthenium-attached epoxide to afford an alkoxide intermediate; CO2 insertion into the RuO bond followed by ring-closure yields the product. Density functional calculations at the B3LYP level of theory were carried out to understand the structural and energetic aspects of the two possible reaction pathways. The results of the calculations indicate that Route II is favored over Route I.
Acrylamide: A Cooking Carcinogen? (2000)

Exposure to acrylamide (AA) has been monitored by mass spectrometric detection of the adduct, N-(2-carbamoylethyl)valine (CEV), to the N-termini of hemoglobin (Hb), according to the N-alkyl Edman method. In these studies, a conspicuous background level, about 40 pmol/g of globin, of apparently the same adduct was regularly observed in Hb from persons without known exposure to AA. For testing of the hypothesis that this adduct originates from AA formed in cooking, rats were fed fried animal standard diet for 1 or 2 months. These animals exhibited a strong increase of the level of the studied Hb adduct, compared to control rats fed unfried diet. By gas chromatography/tandem mass spectrometry, the identity with CEV was confirmed by the concordance of the product ion spectrum of the studied adduct with that of a verified standard and by interpretation of the fragment ions. Further support of the chemical structure, at the same time pinpointing AA as the causative reactive factor, was obtained through the demonstration that AA is formed in the heating of the feed and that the level of AA in the fried feed is compatible with the measured levels of the CEV adduct. The raised CEV adduct levels observed in experimental animals are of a magnitude that is similar to the background level in nonsmoking humans. These data render it likely that cooking of food is a major source of the background dose of AA also in humans. An evaluation of cancer tests of AA and available data for its metabolism leads to the estimation that the background dose of AA is associated with a considerable cancer risk.
Gamma-irradiation as a tool to reduce immunogenicity of islet allo- and xenografts. (1990)

Sensitivity of pancreatic endocrine cells to gamma-irradiation and alteration of islet immunogenicity by irradiation were examined. Syngeneic, allogeneic (DBA/2) and xenogeneic (rat) islets were irradiated and transplanted at varying doses (8, 24, 40, 80 and 160 Gy) into streptozotocin-induced diabetic B6AF1 mice. In an isograft model, late loss of graft function was observed in some animals given 200 24-Gy-irradiated islets. However, larger numbers (400-500) of islets given 40 Gy irradiation did not show reversal of normoglycemia. With higher doses (80 or 160 Gy) significant early as well as late graft loss was observed. In an allograft model, the irradiated islet allografts survived beyond controls. Marked prolongation was achieved with a broad range of irradiation doses between 8 Gy and 120 Gy with 30-90% of recipients maintaining normoglycemia over 50 days. Late loss of graft function was observed between 78 and 180 days with a dose over 24 Gy. Increasing dose resulted in a better allograft survival rate in the early postoperative period, but tended to curtail longterm survival. In an xenograft model, irradiation of islets with 8 to 24 Gy led to prolongation of graft survival. Maximum graft prolongation was achieved with 24 Gy. Higher doses were much less effective and, in some recipients, caused shortening of graft survival.(ABSTRACT TRUNCATED AT 250 WORDS)
Construction and use of signal sequence selection vectors in Escherichia coli and Bacillus subtilis (1987)

To study the diversity and efficiency of signal peptides for secreted proteins in gram-positive bacteria, two plasmid vectors were constructed which were used to probe for export signal-coding regions in Bacillus subtilis. The vectors contained genes coding for extracellular proteins (the alpha-amylase gene from Bacillus licheniformis and the beta-lactamase gene from Escherichia coli) which lacked a functional signal sequence. By shotgun cloning of restriction fragments from B. subtilis chromosomal DNA, a great variety of different export-coding regions were selected. These regions were functional both in B. subtilis and in E. coli. In a number of cases where protein export had been restored, intracellular precursor proteins of increased size could be detected, which upon translocation across the cellular membrane were processed to mature products. The high frequency with which export signal-coding regions were obtained suggests that, in addition to natural signal sequences, many randomly cloned sequences can function as export signal.
Separation of growth-stimulating peptides forBifidobacteriumfrom soybean conglycinin (2005)

The results have shown that conglycinin is good source for enzyme-mediated production of peptides which stimulate the growth of bifidobacteria. These peptides are inactive within the sequence of the parent protein but can be released during enzymatic hydrolysis, and in vivo experiments demonstrate that conglycinin peptides may be beneficial for improving gastrointestinal health.
Lighting (1995)

Abstract Most electric lighting pulsates in brightness twice with each cycle of the alternating electricity supply. Fluorescent lighting fluctuates to such an extent as to affect the firing of visual neurons. The fluctuation is responsible for more than half the headaches and eye-strain suffered by office workers. Glasses that absorb light at the short wavelength end of the visible spectrum, where the fluctuations are maximal, may reduce headaches in children with migraine.
Nonintrusive Load-Shed Verification (2010)

Smart-grid support for demand response lets electricity service providers shed loads during peak usage periods with minimal consumer inconvenience. Direct load control is a strategy in which consumers enroll appliances, such as electric water heaters, air conditioners, and electric vehicles, in a program to respond to load-shed instructions in exchange for a discount on electricity prices or other incentives. Direct control's effectiveness depends on the provider's ability to verify that appliances respond to load-shed instructions. Nonintrusive load monitoring, in which electric power meters identify loads generated by specific appliances, provides a practical strategy for load-shed verification in residences. Nonintrusive load-shed verification simplifies the trust assumptions required for direct-control deployment.
Modification of the circadian pattern of ventricular tachyarrhythmias by beta‐blocker therapy (1997)

Beta-adrenergic antagonists influence the circadian distribution of malignant ventricular tachyarrhythmias in patients with an implantable cardioverter defibrillator. The blunted morning peak of tachyarrhythmic events during beta blockade supports the hypothesis that a sympathetic surge is involved in the circadian pattern of malignant arrhythmias.
Evidence that the major degradation product of glucose-dependent insulinotropic polypeptide, GIP(3-42), is a GIP receptor antagonist in vivo (2002)

The incretin hormone glucose-dependent insulinotropic polypeptide (GIP) is rapidly degraded in the circulation by dipeptidyl peptidase IV forming the N-terminally truncated peptide GIP(3-42). The present study examined the biological activity of this abundant circulating fragment peptide to establish its possible role in GIP action. Human GIP and GIP(3-42) were synthesised by Fmoc solid-phase peptide synthesis, purified by HPLC and characterised by electrospray ionisation-mass spectrometry. In GIP receptor-transfected Chinese hamster lung fibroblasts, GIP(3-42) dose dependently inhibited GIP-stimulated (10(-7) M) cAMP production (up to 75.4+/-5.4%; P<0.001). In BRIN-BD11 cells, GIP(3-42) was significantly less potent at stimulating insulin secretion (1.9- to 3.2-fold; P<0.001), compared with native GIP and significantly inhibited GIP-stimulated (10(-7) M) insulin secretion with maximal inhibition (48.8+/-6.2%; P<0.001) observed at 10(-7) M. In (ob/ob) mice, administration of GIP(3-42) significantly inhibited GIP-stimulated insulin release (2.1-fold decrease; P<0.001) and exaggerated the glycaemic excursion (1.4-fold; P<0.001) induced by a conjoint glucose load. These data indicate that the N-terminally truncated GIP(3-42) fragment acts as a GIP receptor antagonist, moderating the insulin secreting and metabolic actions of GIP in vivo.
Micromachining of optical structures with focused ion beams (1987)

For the first generation of lightwave devices, semiconductor lasers and detectors have been used as discrete elements. As the technology continues to evolve, integration of light sources with electronics or other optical elements will be necessary. However, an efficient and reliable method for generating laser facets and other optical elements internal to the integrated system must first be developed. Three dimensional features have been milled into optical materials by scanning a submicron focused gallium ion beam. Different shapes are obtained using computer controlled beam placement and dwell time during sputtering. We have used this technique to create micron-sized facets and reflectors in the active areas of semiconductor lasers. Light output and quantum efficiency measurements indicate that these features are of sufficient quality to fabricate monolithic integrated optical devices. Some of the applications currently being investigated are laser–detector pairs, coupled cavity lasers, lasers with integral lenses, distributed feedback lasers, confocal cavities, and laser cavity length tuning.
Muscle Wasting in Cancer Cachexia: Clinical Implications, Diagnosis, and Emerging Treatment Strategies (2010)

Cancer cachexia is a complex metabolic condition characterized by loss of skeletal muscle. Common clinical manifestations include muscle wasting, anemia, reduced caloric intake, and altered immune function, which contribute to increased disability, fatigue, diminished quality of life, and reduced survival. The prevalence of cachexia and the impact of this disorder on the patient and family underscore the need for effective management strategies. Dietary supplementation and appetite stimulation alone are inadequate to reverse the underlying metabolic abnormalities of cancer cachexia and have limited long-term impact on patient quality of life and survival. Therapies that can increase muscle mass and physical performance may be a promising option; however, there are currently no drugs approved for the prevention or treatment of cancer cachexia. Several agents are in clinical development, including anabolic agents, such as selective androgen receptor modulators and drugs targeting inflammatory cytokines that promote skeletal muscle catabolism.
Serum Proteins Provide A Matrix for Cultured Endothelial Cells on Expanded Polytetrafluoroethylene Vascular Grafts (1993)

Endothelialization of prosthetic vascular grafts has been shown to increase patency. We studied the adhesion of cultured endothelial cells of adult human saphenous vein to serum protein coating on expanded polytetrafluoroethylene vascular grafts. The adhesion was compared with that on native or collagen type I-coated grafts. Scanning electron microscopy was used to analyze the precoating and the appearance of the added cultured cells. Presence of radioactively labeled saphenous vein endothelial cells was compared between precoated and uncoated grafts before and after exposure to pulsatile plasma flow. The adherence of saphenous vein endothelial cells was markedly increased on grafts coated with serum proteins or collagen. On both graft types the cells formed confluent areas, which were also present after the plasma flow. The technique was designed to promote endothelialization, using autologous serum as the main source for both growth stimulation during culture and adherence of endothelial cells to grafts. The method may be clinically useful for precoating and endothelialization of vascular grafts.
Ester Hydrolysis by a Catalytic Cyclodextrin Dimer Enzyme Mimic with a Metallobipyridyl Linking Group (1997)

A β-cyclodextrin dimer with a linking bipyridyl group is synthesized as a catalyst precursor, a holoenzyme mimic. It binds both ends of potential substrates into the two different cyclodextrin cavities, holding the substrate ester carbonyl group directly above a metal ion bound to the bipyridyl unit. The result is very effective ester hydrolysis with good turnover catalysis. For example, a Cu(II) complex accelerates the rate of hydrolysis of several nitrophenyl esters by a factor of 104−105, with at least 50 turnovers and no sign of product inhibition. In the best case, with an added nucleophile that also binds to the metal ion, a rate acceleration of 1.45 × 107 over the background reaction rate was observed. Hydrolysis by a catalyst with only one cyclodextrin binding group is significantly slower than in the bidentate binding cases. As expected, the binding of a transition state analogue to these catalysts is stronger with the metal ion present than without. This and kinetic evidence point to a mechanism in which the metal ion plays a bifunctional acid−base role, enforced by the binding geometry that holds the substrate functionality right on top of the catalytic metal ion.
Optical-coherence tomography of a dense tissue: statistics of attenuation and backscattering (1994)

This paper addresses fundamental issues that underlie the interpretation of images acquired from turbid tissues by optical-coherence tomography (OCT). The attenuation and backscattering properties of freshly excised rat arteries and their dependence on the focusing and collection optics of the OCT system were measured at two wavelengths in the near infrared (830 nm and 1300 nm). Determined from the ratio of the magnitudes of the reflections from glass plates placed on both sides of the arteries, the mean attenuation coefficient of the arterial wall was found to be in the range 14 < microt < 22 mm(-1) at 830 nm and 11 < microt < 20 mm(-1) at 1300 nm. The measured values of microt were lowest for the longer source wavelength and for probe beams with the smallest average diameters. The observed dependence of microt on beam size indicates that relatively large-scale variations in the index of refraction of the tissue contributed to degradation of the tranverse spatial coherence of the beam. We introduce a framework for understanding and quantifying beam-size effects by way of the mutual-coherence function. The fact that spatial variations in backscattering and attenuation (which includes spatial-coherence losses) have similar effects on OCT signals makes the origin of the signals difficult to determine. Evidence is given that suggests that, in spite of this difficulty, certain features of microstructures embedded several hundred micrometres deep in a turbid tissue can still be detected and characterized.
A selective LPCVD tungsten process using silane reduction for VLSI applications (1990)

A selective CVD tungsten process using silane reduction of tungsten hexafluoride has been investigated. A deposition rate as high as 0.6 mu m/min is obtained. The properties of the tungsten films have been investigated by X-ray diffraction, secondary ion mass spectroscopy, and transmission electron microscopy. The tungsten films contain a small amount of Si, which is uniformly distributed as a W/sub 5/Si/sub 3/ phase. The silane reduction process completely suppresses undesirable phenomena, such as Si consumption, lateral encroachment, and wormholes. Measurements have been made of the junction leakage current and the contact resistance. The junction leakage current for this process is almost the same as that for the conventional AlSi process. The contact resistance of submicron holes is more stable and lower for this process than for the conventional one. The new process has been successfully applied to CMOS 1-Mb DRAMs.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Carbon Nanotubes for Electronic and Electrochemical Detection of Biomolecules (2007)

The unique electronic and optical properties of carbon nanotubes, in conjunction with their size and mechanically robust nature, make these nanomaterials crucial to the development of next-generation biosensing platforms. In this Review, we present recent innovations in carbon nanotube-assisted biosensing technologies, such as DNA-hybridization, protein-binding, antibody-antigen and aptamers. Following a brief introduction on the diameter- and chirality-derived electronic characteristics of single-walled carbon nanotubes, the discussion is focused on the two major schemes for electronic biodetection, namely biotransistor- and electrochemistry-based sensors. Key fabrication methodologies are contrasted in light of device operation and performance, along with strategies for amplifying the signal while minimizing nonspecific binding. This Review is concluded with a perspective on future optimization based on array integration as well as exercising a better control in nanotube structure and biomolecular integration.
Acute HIV-1 Infection (2011)

More than 33 million people are living with HIV-1, and more than 2.5 million additional cases are detected each year. This review addresses recent advances in our understanding of the transmission of HIV-1 and of acute HIV-1 infection.
Effects of Fructooligosaccharides on Intestinal Flora and Human Health (1986)

A study was made of the effects of fructooligosaccharides, which exist widely inplants such as onion, edible burdock, wheat etc., on the human and animal intestinal flora. Fructooligosaccharides are produced from sucrose with the aid of β-fructofuranosidase from Aspergillus niger on a commercial scale by Meiji Seika Kaisha, Ltd.(Neosugar, Meioligo®). It has been found that they are not hydrolyzed by any digestive enzymes of humans and animals. Moreover utilization byvarious kinds ofintestinal bacteria indicated that Bifidobacterium spp., the Bacteroides fragilis group, Peptostreptococcus spp. and Klebsiella pneumoniae can utilize these saccharides, but Clostridium perfringens, Escherichia coli and others cannot. The fructooligosaccharides are selectively utilized, particularly by bifidobacteria.The clinical studies showed that fructooligosaccharides administration improved the intestinal flora, with subsequent relief of constipation, improved blood lipids in hyperlipidemia, and suppressed the production of intestinal putrefactivesubstances.
Generalized multidimensional scaling: A framework for isometry-invariant partial surface matching (2006)

An efficient algorithm for isometry-invariant matching of surfaces is presented. The key idea is computing the minimum-distortion mapping between two surfaces. For this purpose, we introduce the generalized multidimensional scaling, a computationally efficient continuous optimization algorithm for finding the least distortion embedding of one surface into another. The generalized multidimensional scaling algorithm allows for both full and partial surface matching. As an example, it is applied to the problem of expression-invariant three-dimensional face recognition.