gebhart/patrepeval huggingface dataset:
Local production of tumor necrosis factor encoded by recombinant vaccinia virus is effective in controlling viral replication in vivo. (1991)

Tumor necrosis factor (TNF) has pleiotropic effects on a wide variety of cell types. In vitro studies have demonstrated that TNF has antiviral properties and is induced in response to viral infections. However, a role for TNF in the antiviral immune response of the host has yet to be demonstrated. Here we describe the construction of and studies using a recombinant vaccinia virus that encodes the gene for murine TNF-alpha. By comparing the replication of and immune responses elicited by the TNF-encoding virus to a similarly constructed control virus, we hoped to observe immunobiological effects of TNF in the host. The in vivo experiments with this recombinant virus demonstrate that the localized production of TNF-alpha during a viral infection leads to the rapid and efficient clearance of the virus in normal mice and attenuates the otherwise lethal pathogenicity of the virus in immunodeficient animals. This attenuation occurs early in the infection (by postinfection hour 24) and is not due to the enhancement of cellular or antibody responses by the vaccinia virus-encoded TNF. This evidence suggests that attenuation of the recombinant virus is due to a direct antiviral effect of TNF on cells at the site of infection. Therefore, these results support the suggestion that TNF produced by immune cells may be an important effector mechanism of viral clearance in vivo.
Conjugation of methotrexate to poly(L-lysine) increases drug transport and overcomes drug resistance in cultured cells (1978)

Methotrexate and [(3)H]methotrexate were conjugated through a carbodiimide-catalyzed reaction to a 70,000 molecular weight poly(L-lysine) in molar ratios of approximately 13 to 1. The cellular uptake of labeled conjugate was far in excess of the uptake of free drug in cells that were either proficient or deficient in methotrexate transport. The conjugate markedly inhibited the growth of PRO(-)3 Mtx(RII) 5-3 Chinese hamster ovary cells, which are known to be drug resistant by virtue of a deficient methotrexate transport. The cells, however, were not inhibited by the same concentrations of free poly(Lys) and free drug. The 100-fold difference in drug concentration needed to inhibit the mutant cells and their corresponding wild type was totally abolished by exposing the methotrexate-resistant cells to methotrexate-poly(Lys). That the drug is carried into the resistant cells as intact drug-poly(Lys) is evident also from the fact that the conjugate is rendered inactive by brief trypsinization in vitro. Because the conjugate fails to inhibit dihydrofolate reductase (5,6,7,8-tetrahydrofolate: NADP(+) oxidoreductase; EC 1.5.1.3) in vitro, it must be concluded that the strong growth inhibitory effect of the conjugate is due to the intracellular hydrolysis of its polymeric backbone, followed by the release inside the cell of a pharmacologically active form of methotrexate. Our date show that in methotrexate-resistant cells the intracellular release of active drug after uptake of conjugate is of the same order of magnitude as the uptake of free drug by transport-proficient cells and, hence, that the drug resistance due to deficient transport can be totally overcome.
Internet X.509 Public Key Infrastructure Certificate and CRL Profile (1999)

This memo profiles the X.509 v3 certificate and X.509 v2 CRL for use in the Internet.An overview of the approach and model are provided as an introduction.The X.509 v3 certificate format is described in detail, with additional information regarding the format and semantics of Internet name forms (e.g., IP addresses).Standard certificate extensions are described and one new Internet-specific extension is defined.A required set of certificate extensions is specified.The X.509 v2 CRL format is described and a required extension set is defined as well.An algorithm for X.509 certificate path validation is described.Supplemental information is provided describing the format of public keys and digital signatures in X.509 certificates for common Internet public key encryption algorithms (i.e., RSA, DSA, and Diffie-Hellman).ASN.1 modules and examples are provided in the appendices.
An animal model of spontaneous metabolic syndrome: Nile grass rat (2010)

Metabolic syndrome (MetS) is a prevalent and complex disease, characterized by the variable coexistence of obesity, dyslipidemia, hyperinsulinaemia, and hypertension. The alarming rise in the prevalence of metabolic disorders makes it imperative to innovate preventive or therapeutic measures for MetS and its complications. However, the elucidation of the pathogenesis of MetS has been hampered by the lack of realistic models. For example, the existing animal models of MetS, i.e., genetically engineered rodents, imitate certain aspects of the disease, while lacking other important components. Defining the natural course of MetS in a spontaneous animal model of the disease would be desirable. Here, we introduce the Nile grass rat (NGR), Arvicanthis niloticus, as a novel model of MetS. Studies of over 1100 NGRs in captivity, fed normal chow, revealed that most of these animals spontaneously develop dyslipidemia (P<0.01), and hyperglycemia (P<0.01) by 1 yr of age. Further characterization showed that the diabetic rats develop liver steatosis, abdominal fat accumulation, nephropathy, atrophy of pancreatic islets of Langerhans, fatty streaks in the aorta, and hypertension (P<0.01). Diabetic NGRs in the early phase of the disease develop hyperinsulinemia, and show a strong inverse correlation between plasma adiponectin and HbA1c levels (P<0.01). These data indicate that the NGR is a valuable, spontaneous model for exploring the etiology and pathophysiology of MetS as well as its various complications.
ABC Transporters: From Microorganisms to Man (1992)

Cells organize many of their biochemical reactions in non-membrane compartments. Recent evidence has shown that many of these compartments are liquids that form by phase separation from the cytoplasm. Here we discuss the basic physical concepts necessary ...Read More
Application of Real Time Surveillance and Optimisation Tools on a Large Asset (2006)

Abstract This paper demonstrates the use of real time well surveillance and optimization tools in the Northern Fields of Petroleum Development Oman LLC (abbreviated as PDO in the rest of this paper). The use of such software as part of the Real-Time Infrastructure (including a data historian and PDO's in-house developed Production Portal for long term real time data trends) has been one of the key enablers to create renewed focus in Well &amp; Reservoir Management. Furthermore it was one of the contributing factors in significantly reducing unscheduled well deferment. The software that was used is highly modular, hence was used to target specific PDO problems quickly and cost-effectively. Monitoring, reporting and alarming functionality was used to identify problems, while the analysis functionality was used to find causes of those problems. In some fields real time flow estimation was implemented based on data driven well models (i.e. empirical as opposed to physical well models), which give a continuous real time estimate of oil, gas and water. Intensive use of the data has led to reduced deferment, early identification of well problems and lower decline rates by e.g. identifying fracturing and short-cutting of injectors to producers. PDO's Real-Time Infrastructure has built in data integration capabilities, which allow easy integration of the data throughout the company without requiring duplication of the data. The combination of effective use of all the applications in and around the Real-time Infrastructure and complementary initiatives (mostly with a focus on wells) have improved production and mitigated decline, equivalent to a sustainable production improvement of around 7,000 bpd.
The D2 B a One Logical Wire Bus for Consumer Applications (1981)

The D2B bus (Domestic Digital Bus) is a multi-master bus which can be used by various consumer units to talk to one another in a well defined manner. (Fig. 1) The bus is a serial bus and all bus control information and data flows occur serially over one connection. The only property demanded of this connection is that it provide either a "wire-and" or a "wire-or" facility. Thus the transmission medium can be a copper wire, a glass fibre, an infra-red beam or any other transmission medium which fulfils the above requirements.
Retinal Progenitor Cells — Timing Is Everything (2007)

Permitting progenitor photoreceptor cells from donors to differentiate before transplanting them is key to their successful integration into the retina.
Surface microarchitectural design in biomedical applications:In vitro transmural endothelialization on microporous segmented polyurethane films fabricated using an excimer laser (1996)

We describe the preparation of segmented polyurethane (SPU) films with round micropores and present a quantitative assay method of endothelial cell (EC) migration through micropores of and growth on microprocessed SPU films as an in vitro model of transmural endothelialization in open-cell-structured small-diameter vascular grafts. The micropored films, pores of which ranged from 9 to 100 microns in diameter, were microfabricated using an excimer laser. Time-dependent processes of EC ingrowth through micropores of SPU films with different pore sizes, which have a confluent monolayer sheet on one face and are cell free on the other, and subsequent endothelialization were quantitatively studied. The circular cellular sheet centered at the micropores expanded as incubation proceeded. Markedly retarded migration was found for the smallest pore size (9 microns in diameter). The larger the pore, the higher was the endothelialization rate. The endothelialization characteristics were studied on multiply microspored films of different pore sizes and densities, each of which was prepared so as to provide a fixed total pore area per unit area (0.01 mm2 per mm2). The highest endothelialization rates in an early incubation period were found on films with microspores between 18 and 50 microns in diameter.
Synthetic Studies on Selectin Ligands/Inhibitors: Synthesis and Inhibitory Activity of 2-O-Fucosyl Sulfatides Containing 2-Branched Fatty Alkyl Residues in Place of Ceramide (1998)

Abstract To investigate the biological selectin-ligand interactions, four sulfated 2-O-α-L-fucopyranosyl β-D-galactopyranosides containing 2-branched fatty-alkyl residues in place of ceramide have been systematically synthesized. The target glycolipids were assayed for their ability to block the adhesion of HL-60 cells to immobilized P-, L- and E-selectin. Among them, 2-O-α-L-fucopyranosyl sulfatide, which is anchored with 2-(tetradecyl) hexadecyl residue showed significantly more potency of the blocking adhesion to P- and L-selectins.
Characterization of immunoreactive octapeptides of human‐cytomegalovirus gp58 (1993)

We have mapped continuous epitopes, for positions 591-673 of the human cytomegalovirus 58-kDa glycoprotein using overlapping synthetic peptides and human sera. This region contains a fragment previously described as including the dominant site for induction of human-cytomegalovirus antibodies. Since the selected sequence is highly conserved among herpes viruses, we have considered the possible presence of antigenic cross-reactivity, particularly with the Epstein-Barr virus. Several peptides in the studied region were antigenic and two main continuous epitopes have been identified. Serological cross-reactions observed with Epstein-Barr virus are discussed, focusing on the possible implications of structural features and sequence similarity between human-cytomegalovirus and Epstein-Barr-virus glycoproteins.
DocFormer: End-to-End Transformer for Document Understanding (2021)

We present DocFormer - a multi-modal transformer based architecture for the task of Visual Document Understanding (VDU). VDU is a challenging problem which aims to understand documents in their varied formats (forms, receipts etc.) and layouts. In addition, DocFormer is pre-trained in an unsupervised fashion using carefully designed tasks which encourage multi-modal interaction. DocFormer uses text, vision and spatial features and combines them using a novel multi-modal self-attention layer. DocFormer also shares learned spatial embeddings across modalities which makes it easy for the model to correlate text to visual tokens and vice versa. DocFormer is evaluated on 4 different datasets each with strong baselines. DocFormer achieves state-of-the-art results on all of them, sometimes beating models 4x its size (in no. of parameters).
Dexmedetomidine to Control Agitation and Delirium from Toxic Ingestions in Adolescents (2010)

Dexmedetomidine is an α(2)-adrenergic agonist that is approved by the Food and Drug Administration for the provision of short term (less than 24 hours) sedation of adults during mechanical ventilation. Given its beneficial physiologic effects including sedation and anxiolysis, various applications have been reported in the pediatric-aged patient. We report the use of dexmedetomidine to control the agitation and violent behavior which resulted from the ingestion of illicit drugs in 3 adolescents. The utility of dexmedetomidine in these scenarios is discussed and its potential beneficial effects on cardiovascular and respiratory function are reviewed.
Comparative speed of efficacy against Ctenocephalides felis of two oral treatments for dogs containing either afoxolaner or fluralaner (2014)

A study was designed to compare the efficacy of NexGard(®) and Bravecto™, 2 recently introduced oral ectoparasiticides containing isoxazolines, against fleas (Ctenocephalides felis) on dogs. Twenty-four healthy dogs, weighing 9.2 kg to 28.6 kg, were included in this parallel group design, randomized, and controlled efficacy study. On Day -1, the 24 dogs were allocated to 3 study groups: untreated control; Nexgard(®) treated and Bravecto™ treated. The treatments were administered on Days 0, 28 and 56 for Nexgard(®) (labelled for monthly administration), and once on Day 0 for Bravecto™ (labelled for a 12 week use). Flea infestations were performed weekly with 100 adult unfed C. felis on each dog from Days 42 to 84. Fleas were counted and re-applied at 6 and 12 h post-infestation and removed and counted 24 h post-infestation. The arithmetic mean flea count for the untreated group ranged from 62.9 to 77.6 at 24 h post-infestation, indicating vigorous flea challenges on all assessment days. Both the Nexgard(®) and Bravecto™ treated groups had statistically significantly (p<0.05) less fleas compared to the untreated group on all assessment time points and days. Significantly fewer fleas were recorded for NexGard(®) treated dogs compared to Bravecto™ treated dogs at 6 h post-infestation on Day 56, 63, 70, 77 and 84 and at 12 h post-infestation on Days 70 and 84. No statistically significant (p<0.05) differences were recorded between the treated groups at 24 h post-infestation. Efficacies recorded 6 h post-infestation for Nexgard(®) ranged from 62.8% (Day 49) to 97.3% (Day 56), and efficacies ranged from 94.1% (Day 49) to 100% (Days 42, 56, 70 and 84) at 12 h post-infestation. Efficacies recorded for Bravecto™ ranged from 45.1% (Day 84) to 97.8% (Day 42) at 6 h post-infestation, and from 64.7% (Day 84) to 100% (Days 42 and 56) at 12 h post-infestation. Efficacies observed at 24 h were 100% for both products during the study except 99.6% on Day 84 for Bravecto™.
A Method for Tlp Imaging (1985)

The spin lattice relaxation time (T1) is dependent on the strength of the polarizing magnetic field. The relaxation at low field strengths provides information from the processes at macromolecular level. However, the decrease of the polarizing magnetic field decreases the signal-to-noise ratio that determines the resolution of magnetic resonance images. In this report we describe a method for T1 rho imaging. The method possesses the relaxation time contrast of low field strengths with signal-to-noise ratio provided by the higher polarizing field. The relaxation time T1 rho is obtained under spin lock conditions. The spin system relaxes toward thermal equilibrium along the locking field. This process is analogous to the spin lattice relaxation at low field strength and characterized by the time constant T1 rho. T1 rho and T1 rho-dispersion may provide new imaging parameters for noninvasive tissue characterization.
The variable domain of nonassembled Ig light chains determines both their half-life and binding to the chaperone BiP (1998)

Not much is known about the features that determine the biological stability of a molecule retained in the endoplasmic reticulum (ER). Ig light (L) chains that are not secreted in the absence of Ig heavy (H) chain expression bind to the ER chaperone BiP as partially folded molecules until they are degraded. Although all Ig L chains have the same three-dimensional structure when part of an antibody molecule, the degradation rate of unassembled Ig L chains is not identical. For instance, the two nonsecreted murine Ig L chains, kappaNS1 and lambdaFS62, are degraded with half-lives of approximately 1 and 4 hr, respectively, in the same NS1 myeloma cells. Furthermore, the BiP/lambdaFS62 Ig L chain complex appears to be more stable than the BiP/kappaNS1 complex. Here, we used the ability of single Ig domains to form an internal disulfide bond after folding as a measure of the folding state of kappaNS1 and lambdaFS62 Ig L chains. Both of these nonsecreted L chains lack the internal disulfide bond in the variable (V) domain, whereas the constant (C) domain was folded in that respect. In both cases the unfolded V domain provided the BiP binding site. The stability of BiP binding to these two nonsecreted proteins was quite different, and both the stability of the BiP:Ig L chain complex and the half-life of the Ig L chain could be transferred from one Ig L chain isotype to the other by swapping the V domains. Our data suggest that the physical stability of BiP association with an unfolded region of a given light chain determines the half-life of that light chain, indicating a direct link between chaperone interaction and delivery of partially folded substrates to the mammalian degradation machinery.
Method for sulfide S-benzylation or S-allylation using trimethylsilyl triflate activated benzyl or allyl ethers (1981)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTMethod for sulfide S-benzylation or S-allylation using trimethylsilyl triflate activated benzyl or allyl ethersE. Vedejs and J. EustacheCite this: J. Org. Chem. 1981, 46, 16, 3353–3354Publication Date (Print):July 1, 1981Publication History Published online1 May 2002Published inissue 1 July 1981https://pubs.acs.org/doi/10.1021/jo00329a048https://doi.org/10.1021/jo00329a048research-articleACS PublicationsRequest reuse permissionsArticle Views170Altmetric-Citations2LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Intranasal administration of retinal antigens suppresses retinal antigen-induced experimental autoimmune uveoretinitis. (1994)

Bovine retinal extract (RE) is a heterologous mixture of highly uveitogenic proteins including S-Antigen (S-Ag), interphotoreceptor retinol binding protein (IRBP) and rhodopsin, and is a potent inducer of experimental autoimmune uveoretinitis (EAU). Intranasal inoculation of Lewis rats with RE performed daily for 10 days prior to immunization with RE suppresses both the severity and the incidence of the clinical response and histopathological changes in EAU. Significant suppression of the disease in treated animals could be achieved with a total (cumulative) intranasal inoculum of 42 micrograms of antigen. Animals which were treated with extract exhibited a normal total antibody response to S-Ag, IRBP and retinal extract when compared with controls [phosphate-buffered saline (PBS) treated] animals. The antibody response in tolerized animals was predominantly anti-S-Ag IgG2a with suppression of anti-S-Ag IgM response. Treated animals had a significantly suppressed delayed-type hypersensitivity (DTH) response to retinal extract but normal response to purified protein derivative (PPD) compared to control animals. Adoptive transfer of splenocytes from treated animals also demonstrated some protection against RE-induced EAU. These results demonstrate that tolerance induction impairs the onset and severity of EAU by inhibiting the DTH response to heterologous mixture of retinal antigens.
Antibacterial Activities and Characterization of Novel Inhibitors of LpxC (2002)

Lipid A is the hydrophobic anchor of lipopolysaccharide (LPS) and forms the major lipid component of the outer monolayer of the outer membrane of gram-negative bacteria. Lipid A is required for bacterial growth and virulence, and inhibition of its biosynthesis is lethal to bacteria. UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase (LpxC) is a metalloenzyme that catalyzes the second step in the biosynthesis of lipid A. Inhibitors of LpxC have previously been shown to have antibiotic activities. We have screened a metalloenzyme inhibitor library for antibacterial activities against an Escherichia coli strain with reduced LpxC activity. From this screen, a series of sulfonamide derivatives of the alpha-(R)-amino hydroxamic acids, exemplified by BB-78484 and BB-78485, have been identified as having potent inhibitory activities against LpxC in an in vitro assay. Leads from this series showed gram-negative selective activities against members of the Enterobacteriaceae, Serratia marcescens, Morganella morganii, Haemophilus influenzae, Moraxella catarrhalis, and Burkholderia cepacia. BB-78484 was bactericidal against E. coli, achieving 3-log killing in 4 h at a concentration 4 times above the MIC, as would be predicted for an inhibitor of lipid A biosynthesis. E. coli mutants with decreased susceptibility to BB-78484 were selected. Analysis of these mutants revealed that resistance arose as a consequence of mutations in the fabZ or lpxC genes. These data confirm the antibacterial target of BB-78484 and BB-78485 and validate LpxC as a target for gram-negative selective antibacterials.
Use of primary breast carcinoma characteristics to predict lymph node metastases (1997)

Analysis of primary cancer features has enabled the authors of the referenced article to define a large proportion of patients with T1 (≤2 cm) invasive breast carcinomas that do not require axillary lymph node dissection. If lymph node histology is required for detailed staging or prognostic data, it will be obtainable by use of physiologically defined "sentinel" lymph node biopsy under local anesthesia. The primary thrust of breast carcinoma control today should be the achievement of universal mammographic screening of appropriately aged women, which has the potential of reducing the median maximum dimensions of all invasive breast carcinomas to only 1 cm within a decade, with commensurate marked reduction of lymph node metastases. See also pages 1862–1864 and 1918-1922.