gebhart/patrepeval huggingface dataset:
On the formation and stability of p-type conductivity in nitrogen-doped zinc oxide (2005)

The behavior of nitrogen in ZnO thin films grown by high-vacuum plasma-assisted chemical vapor deposition is examined. Highly oriented (002) films doped with 0–2at.% N were characterized by x-ray photoelectron spectroscopy, x-ray diffraction (XRD), Seebeck, and Hall measurements. XRD measurements revealed that the zinc oxide lattice constant decreased systematically with nitrogen doping. The as-deposited films were p-type at high doping levels, as confirmed by both Seebeck and Hall measurements. However, it was observed that hole conduction decreased and films reverted to n-type conductivity in a period of several days. This change was accompanied by a simultaneous increase in the lattice constant. The transient electrical behavior may be explained by compensation caused either by hydrogen donors or through defect formation processes common to analogous II-VI semiconductors.
High accuracy machine automated assembly for opto electronics (2002)

One of the major alignment challenges faced by assembly engineers today is the accurate assembly of high-end optoelectronic modules. Silicon optical platform applications, where a laser diode is aligned to a single mode fiber or an optical waveguide, require post-bonding alignments better than 1 micron for optimum device performance. Flip Chip technology has proven its ability to cope with such stringent alignment requirements. Several bonding methods have been investigated, ranging from active alignment of a powered device to various forms of passive self-aligned soldering methods employing one or more mechanical stops. Though these methods have demonstrated some good results, the active alignment method incurs substantial cost of assembly time, while some self-aligning methods carry the disadvantage of requiring additional process steps during chip and substrate fabrication, as well as generating more sporadic alignment results under typical manufacturing variations. A passive alignment approach is proposed, where the mechanical alignment, placement and joining burdens are bourne by a flip chip bonder. Differing substantially from pick and place machines available on the market today, this new flip chip bonder has been specifically aimed at the special requirements of the optoelectronic module market, and is capable of performing in-situ gold-tin eutectic bonding to 1 micron accuracy. The design and application of this bonder to this assembly process is reviewed, with special notice given to optical, thermal and environmental requirements.
Tumor radiosensitization by sustained intratumoral release of bromodeoxyuridine. (1999)

We have previously reported that the use of the polymer bis(p-carboxyphenoxy)propane-sebacic acid (20:80) for intratumoral delivery of cis-platinum in a mouse tumor model (RIF-1) potentiated the effects of acute and fractionated radiation. This mode of drug delivery seems particularly applicable to the administration of radiosensitizing drugs because an optimum concentration of radiosensitizer can be maintained in the tumor over the prolonged period required for fractionated radiation treatment. We have now investigated, in the same tumor model, radiosensitization by the thymidine analogue bromodeoxyuridine (BrdUrd). BrdUrd (20%, w/w) was incorporated into bis(p-carboxyphenoxy)propane-sebacic acid (20:80) and polymer rods containing the drug implanted in the RIF-1 tumor. Preliminary in vitro studies of the rate of release of BrdUrd from the polymer showed an initial rapid loss over 24 h, followed by a slower release extending over the next 5 days. In experiments in which tumor cells, which had incorporated BrdUrd in vivo from implanted polymer, were excised and a single cell suspension irradiated in vitro radiosensitization indicative of BrdUrd incorporation was associated mainly with an increase in the alpha constant for the linear quadratic model of cell survival. Radiosensitization was seen for tumor cells harvested between 5 and 10 days after polymer implant, a finding that is consistent with results of experiments in which the percentage of cells that had incorporated BrdUrd were measured by flow cytometry at various times after polymer/BrdUrd implant. The proportion of tumor cells positive for BrdUrd was 40-50% between 3 and 8 days after polymer implant. When tumors were irradiated in situ and response measured in terms of tumor growth delay (TGD), radiosensitization was not seen for an acute dose of 16.5 Gy. In contrast, significant radiosensitization was seen for fractionated treatments when polymer/BrdUrd was implanted 3 days before the first radiation dose. For a dose of 5 x 6 Gy, TGD was increased from 22 days for radiation alone to 27 days for radiation plus polymer implant. For 10 x 6 Gy fractions, TGD increased from 45-77 days for those mice in whom the tumor eventually regrew, whereas for 25% of the mice in this group the tumor volume was reduced to a point where it was no longer detectable and there was no recurrence for at least 120 days after treatment.
para‐Substituted 2‐Phenyl‐3,4‐dihydroquinazolin‐4‐ones As Potent and Selective Tankyrase Inhibitors (2013)

Human tankyrases are attractive drug targets, especially for the treatment of cancer. We identified a set of highly potent tankyrase inhibitors based on a 2-phenyl-3,4-dihydroquinazolin-4-one scaffold. Substitutions at the para position of the scaffold's phenyl group were evaluated as a strategy to increase potency and improve selectivity. The best compounds displayed single-digit nanomolar potencies, and profiling against several human diphtheria-toxin-like ADP-ribosyltransferases revealed that a subset of these compounds are highly selective tankyrase inhibitors. The compounds also effectively inhibit Wnt signaling in HEK293 cells. The binding mode of all inhibitors was studied by protein X-ray crystallography. This allowed us to establish a structural basis for the development of highly potent and selective tankyrase inhibitors based on the 2-phenyl-3,4-dihydroquinazolin-4-one scaffold and outline a rational approach to the modification of other inhibitor scaffolds that bind to the nicotinamide site of the catalytic domain.
Velocity-estimation accuracy and frame-rate limitations in color Doppler optical coherence tomography (1998)

Color Doppler optical coherence tomography (CDOCT) is a recent innovation that allows spatially localized flow-velocity mapping simultaneously with microstructural imaging. We present a theoretical model for velocity-image formation in CDOCT. The proportionality between the heterodyne detector current Doppler power spectrum in CDOCT and the optical source power spectrum is established. We show that stochastic modifications of the Doppler spectrum by fluctuating scatterer distributions in the flow field give rise to unavoidable velocity-estimation inaccuracies as well as to a fundamental trade-off between image-acquisition rate and velocity precision. Novel algorithms that permit high-fidelity depth-resolved measurements of velocities in turbid media are also reported.
Heparan sulfate and chondroitin sulfate proteoglycans inhibit E-selectin binding to endothelial cells (2001)

E-selectin is a cell adhesion molecule involved in the initial rolling and adhesion of leukocytes to the endothelium during inflammation. In addition, in vitro studies have suggested that an interaction between E-selectin and binding sites such as sialyl Lewis X-containing oligosaccharides on endothelial cells may be important for angiogenesis. In order to investigate the binding of E-selectin to endothelial cells, we developed an ELISA assay using chimeric E-selectin-Ig molecules and endothelial cells fixed on poly-L-lysine coated plates. Our results indicate that E-selectin-Ig binds to both bovine capillary endothelial cells and human dermal microvascular endothelial cells in a calcium-dependent and saturable manner. The binding is inhibited markedly by heparin and by syndecan-1 ectodomain, and moderately by chondroitin sulfate, but not by sialyl Lewis X-containing oligosaccharides. These results suggest that heparan sulfate and chondroitin sulfate proteoglycans on endothelial cells are potential ligands for E-selectin.
Binding of plasminogen to hepatocytes isolated from injured mice liver and nonparenchymal cell-dependent proliferation of hepatocytes (2008)

Plasmin is an essential enzyme located in the pericellular microenvironment of liver cells during liver regeneration. Previously, we reported that liver regeneration ability was significantly increased in alpha2-antiplasmin gene knockout mice as compared to wild-type mice, but it was significantly decreased in plasminogen knockout mice, or Plg/alpha2-antiplasmin gene knockout mice. The present study aimed to demonstrate direct interaction between plasminogen and mouse hepatocytes in the process of liver regeneration. Using the isolated hepatocytes from mice we analyzed following subjects: binding capacity of plasminogen to hepatocytes, plasminogen activation in the presence of hepatocytes, and proliferation ability of hepatocytes cocultured with liver nonparenchymal cells. The isolated hepatocytes from plasminogen wild-type mice bound to immobilized plasminogen. The mouse hepatocytes enhanced plasminogen activation, and impaired the inhibitory effect of alpha2-antiplasmin. The proliferation ability of hepatocytes after liver injury was studied. In plasminogen wild-type and plasminogen knockout mice, the hepatocytes cocultured with nonparenchymal cells, which were obtained from mice without CCl4 injection, showed similar proliferation abilities. On the contrary, the proliferation ability of hepatocytes cocultured with nonparenchymal cells, which were obtained from CCl4-treated plasminogen knockout mice, was significantly impaired as compared to wild-type mice. These results indicate that the plasminogen-plasmin system on the surface of mouse hepatocytes plays an important role in liver regeneration.
Geomagnetic Activity, Humidity, Temperature and Headache: Is, There Any Correlation? (1994)

Meterological factors influence several biological functions. Geomagnetic activity (GMA) can be considered a trigger factor of migraine attacks. We studied the possible relationship between 40 migraine patients and some meteorological factors: humidity, temperature and geomagnetic activity in particular. All frequency changes of geomagnetic activity, temperature and humidity values are recorded daily. The study was performed from March to June 1988 over a geographically small area in order to avoid climatic and environmental influences. Our results indicate a significant correlation between geomagnetic activity and migraine attack frequency. Controversial opinions concerning the modalities of data collection and the possible relationships between environment and headache raise the need of further studies.
The Water-Gas Shift Reaction (1980)

Abstract The water-gas shift is a reversible, exothermic chemical reaction, usually assisted by a catalyst, and is the' reaction of steam with carbon monoxide to produce carbon dioxide and hydrogen gas
Contour-based surgical instrument tracking supported by kinematic prediction (2010)

The use of the Balsa-II algorithm animation environment to investigate the dynamic behavior of programs is discussed. Balsa-II is examined first from a user's perspective and then from a programmer's perspective. Some related systems are briefly considered.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Stereoselective Koenigs–Knorr Glycosylation Catalyzed by Urea (2016)

A stereoselective Koenigs-Knorr glycosylation reaction under the catalysis of urea is described. This method is characterized by urea-mediated hydrogen-bond activation and subsequent glycosylation with glycosyl chlorides or bromides. Excellent yields and high anomeric selectivity can be achieved in most cases. Moreover, the low α-stereoselectivity of glycosylations observed when using perbenzylated glucosyl donors can be greatly improved by the addition of tri-(2,4,6-trimethoxyphenyl)phosphine (TTMPP).
Pamidronate to Prevent Bone Loss during Androgen-Deprivation Therapy for Prostate Cancer (2001)

Pamidronate prevents bone loss in the hip and lumbar spine in men receiving treatment for prostate cancer with a gonadotropin-releasing hormone agonist.
New computational control techniques and increased understanding for stereo 3-D displays (1990)

Three-dimensional pictorial displays, incorporating depth cues via stereopsis, offer a potential means of displaying information in a natural way to enhance situational awareness and provide increases in operator performance. Conventional computational techniques rely on asymptotic transformations and symmetric clipping to provide the stereo pair. New techniques that replace these conventional computations were developed to increase the control of the stereo-viewing space. Also, the effective region of stereopsis cuing was determined empirically by comparing perceived depth against computed depth. Conventional asymptotic transformations, used to map the visual scene to the stereo viewing volume, allow a single, specific scene distance to be fixed at the screen location. The new piece-wise linear approach allows creative partitioning of the depth viewing volume, with freedom to place the depth cuing emphasis where desired. Asymmetric clipping makes better use of the available display surface than symmetric clipping, and provides increased fields-of-view throughout the depth-viewing volume. The results of the experiment determining the effective region of stereopsis cuing indicate that a practical viewing volume falls between -25%and+60% of the viewer-to-screen distance. Also, the data revealed that increasing viewer-to-CRT distances provide increasing amounts of usable depth.
Gene Cloning and Expression and Secretion of Listeria monocytogenes Bacteriophage-Lytic Enzymes in Lactococcus lactis (2000)

Bacteriophage lysins (Ply), or endolysins, are phage-encoded cell wall lytic enzymes which are synthesized late during virus multiplication and mediate the release of progeny virions. Bacteriophages of the pathogen Listeria monocytogenes encode endolysin enzymes which specifically hydrolyze the cross-linking peptide bridges in Listeria peptidoglycan. Ply118 is a 30.8-kDa L-alanoyl-D-glutamate peptidase and Ply511 (36.5 kDa) acts as N-acetylmuramoyl-L-alanine amidase. In order to establish dairy starter cultures with biopreservation properties against L. monocytogenes contaminations, we have introduced ply118 and ply511 into Lactococcus lactis MG1363 by using a pTRKH2 backbone. The genes were expressed under control of the lactococcal promoter P32, which proved superior to other promoters (P21 and P59) tested in this study. High levels of active enzymes were produced and accumulated in the cytoplasmic cell fractions but were not released from the cells at significant levels. Therefore, ply511 was genetically fused with the (SP)slpA nucleotide sequence encoding the Lactobacillus brevis S-layer protein signal peptide. Expression of (SP)slpA-ply511 from pSL-PL511 resulted in secretion of functional Ply511 enzyme from L. lactis cells. One clone expressed an unusually strong lytic activity, which was found to be due to a 115-bp deletion that occurred within the 3'-end coding sequence of (SP)slpA-ply511, which caused a frameshift mutation and generated a stop codon. Surprisingly, the resulting carboxy-terminal deletion of 80 amino acids in the truncated Ply511 Delta(S262-K341) mutant polypeptide strongly increased its lytic activity. Proteolytic processing of the secretion competent (SP)SlpA-Ply511 propeptide following membrane translocation had no influence on enzyme activity. Immunoblotting experiments using both cytoplasmic and supernatant fractions indicated that the enzyme was quantitatively exported from the cells and secreted into the surrounding medium, where it caused rapid lysis of L. monocytogenes cells. Moreover, transformation of pSL-PL511 delta C into L. lactis Bu2-129, a lactose-utilizing strain that can be employed for fermentation of milk, also resulted in secretion of functional enzyme and showed that the vector is compatible with the native lactococcal plasmids.
Electrical tissue property imaging using MRI at dc and Larmor frequency (2012)

Cross-sectional imaging of conductivity and permittivity distributions inside thehumanbodyhasbeenactivelyinvestigatedinimpedanceimagingareassuch as electrical impedance tomography (EIT) and magnetic induction tomography (MIT). Since the conductivity and permittivity values exhibit frequencydependent changes, it is worthwhile to perform spectroscopic imaging from almost dc to hundreds of MHz. To probe the human body, we may inject current using surface electrodes or induce current using external coils. In EIT and MIT, measured data are only available on the boundary or exterior of the body unless we invasively place sensors inside the body. Their image reconstruction problems are nonlinear and ill-posed to result in images with a relatively low spatial resolution. Noting that an MRI scanner can noninvasively measure magnetic fields inside the human body, electrical tissue property imaging methods using MRI have lately been proposed. Magnetic resonance EIT (MREIT) performs conductivity imaging at dc or below 1 kHz by externallyinjectingcurrentintothehumanbodyandmeasuringinducedinternal magneticfluxdensitydatausinganMRIscanner.Magneticresonanceelectrical property tomography (MREPT) produces both conductivity and permittivity images at the Larmor frequency of an MRI scanner based on B1-mapping techniques. Since internal data are only available in MREIT and MREPT, we may formulate well-posed inverse problems for image reconstructions. To develop related imaging techniques, we should clearly understand the basic principles of MREIT and MREPT, which are based on coupled physics of bioelectromagnetism and MRI as well as associated mathematical methods. In this paper, we describe the physical principles of MREIT and MREPT in a unified way and associate measurable quantities with the conductivity and permittivity. Clarifying the key relations among them, we examine existing image reconstruction algorithms to reveal their capabilities and limitations. We discuss technical issues in MREIT and MREPT and suggest future research
Two additional potential retrotransposons isolated from a human L1 subfamily that contains an active retrotransposable element. (1993)

We have previously reported the isolation of a human retrotransposable L1 element. This element, allele L1.2B at the LRE-1 locus of chromosome 22, was shown by nucleotide sequence identity to be the direct precursor of a de novo retrotransposition event into the factor VIII gene on the X chromosome, resulting in hemophilia A in patient JH-27. We now report the isolation of the two remaining full-length members of the subfamily of L1 elements closely related to L1.2B present in the genome of the mother of JH-27. Since these elements, L1.3 and L1.4, are very similar in sequence to L1.2B and contain both open reading frames 1 and 2 intact, they are also likely to be active retrotransposable elements. This suggests that certain L1 subfamilies may contain multiple active elements.
Rolled-up Functionalized Nanomembranes as Three-Dimensional Cavities for Single Cell Studies (2014)

We use micropatterning and strain engineering to encapsulate single living mammalian cells into transparent tubular architectures consisting of three-dimensional (3D) rolled-up nanomembranes. By using optical microscopy, we demonstrate that these structures are suitable for the scrutiny of cellular dynamics within confined 3D-microenvironments. We show that spatial confinement of mitotic mammalian cells inside tubular architectures can perturb metaphase plate formation, delay mitotic progression, and cause chromosomal instability in both a transformed and nontransformed human cell line. These findings could provide important clues into how spatial constraints dictate cellular behavior and function.
Genomics and Proteomics May Help Clinicians Individualize Cancer Treatment (2002)

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Broadband Piston Mode Operation for First-order Antisymmetric Mode Resonators (2020)

This paper investigates the operating principle, performance, and merits of broadband piston mode, which is achieved by etching windows between active region and busbars on antisymmetric mode resonators. Broadband piston mode can suppress transverse resonant modes while maintaining high quality factor over broadband range.
Wormlike Micelles of Polyoxyethylene Alkyl Ether Mixtures C10E5 + C14E5 and C14E5 + C14E7:  Hydrophobic and Hydrophilic Chain Length Dependence of the Micellar Characteristics (2006)

The wormlike micelles formed with the binary mixtures of surfactant polyoxyethylene alkyl ethers (CiEj), C10E5 + C14E5 (Mix1) and C14E5 + C14E7 (Mix2), were characterized by static (SLS) and dynamic light scattering (DLS) experiments. The SLS results have been analyzed with the aid of the light scattering theory for micelle solutions, thereby yielding the molar mass Mw(c) as a function of c along with the cross-sectional diameter d of the micelle. The observed Kc/DeltaR0 as a function of c, the mean-square radius of gyration (S2) and the hydrodynamic radius RH as functions of Mw have been well described by the theories for the wormlike spherocylinder model. It has been found that the micellar length increases with increasing concentration c or with raising temperature T irrespective of the composition of the surfactant mixtures. The length of the Mix1 and Mix2 micelles at fixed c and T steeply increases with increasing weight fraction wt of C14E5 in both of the surfactant mixtures, implying that the micelles greatly grow in length when the surfactant component with longer alkyl group or with shorter oxyethylene group increases in the mixture. The results are in line with the findings for the micelles of the single surfactant systems where the CiEj micelles grow in length to a greater extent for larger i and smaller j. Although the values of d and the spacing s between the adjacent surfactant molecules on the micellar surface do not significantly vary with composition of the surfactant mixture, the stiffness parameter lambda-1 remarkably decreases with wt in both Mix1 and Mix2 micelles, indicating that the stiffness of the micelle is controlled by the relative strength of the repulsive force due to the hydrophilic interactions between oxyethylene groups to the attractive one due to the hydrophobic interactions between alkyl groups among the surfactant molecules.