gebhart/patrepeval huggingface dataset:
Polyimide Coatings for OLED Applications (2004)

We developed novel positive-tone photosensitive polyimide coatings for insulation layers in organic light emitting diode (OLED) displays. We evaluated the features of the novel coatings in comparison to other candidate polymers including novolak resin, acrylic resin, and polybenzoxazole. After curing, the novel coatings exhibited excellent and stable electrical and thermal properties, and good adhesion to various substrates with quite a low thickness loss during cleaning process, e.g., UV-O3, O2-plasma, etc. In addition we confirmed that the novel coatings could solve the "pixel shrinkage" problem in OLED displays.
The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties (2004)

The INDETERMINATE protein, ID1, plays a key role in regulating the transition to flowering in maize. ID1 is the founding member of a plant-specific zinc finger protein family that is defined by a highly conserved amino sequence called the ID domain. The ID domain includes a cluster of three different types of zinc fingers separated from a fourth C2H2 finger by a long spacer; ID1 is distinct from other ID domain proteins by having a much longer spacer. In vitro DNA selection and amplification binding assays and DNA binding experiments showed that ID1 binds selectively to an 11 bp consensus motif via the ID domain. Unexpectedly, site-directed mutagenesis of the ID1 protein showed that zinc fingers located at each end of the ID domain are not required for binding to the consensus motif despite the fact that one of these zinc fingers is a canonical C2H2 DNA binding domain. In addition, an ID1 in vitro deletion mutant that lacks the extra spacer between zinc fingers binds the same 11 bp motif as normal ID1, suggesting that all ID domain-containing proteins recognize the same DNA target sequence. Our results demonstrate that maize ID1 and ID domain proteins have novel zinc finger configurations with unique DNA binding properties.
Cutaneous lupus: insights into pathogenesis and disease classification. (2007)

Skin disease is the second most common manifestation in SLE patients, and a large number of patients have predominantly cutaneous lupus erythematosus. Experimental animal models suggest that modulation of immunologic factors can have a differential impact on the skin relative to the kidney, and therapeutic responses also suggest potential differences in the immunomodulation of skin relative to other organs affected in lupus. There have been recent insights into the etiology of cutaneous LE, including genetic and environmental factors. The growing understanding of the inflammatory cascade includes the role of UV-induction of pro-inflammatory cytokines, chemokines, and adhesion molecules. Apoptosis, necrosis, autoantibodies, plasmacytoid dendritic cells, T cells, B cells, and vascular changes all play a complex interactive role in the process of induction and maintenance of the lesions of cutaneous LE. Scientific efforts are beginning to clarify the pathophysiologic differences between subsets of cutaneous LE, but there are clearly many areas of investigation needed to elucidate the complex mechanisms that culminate in cutaneous LE.
Improving EEG feature learning via synchronized facial video (2015)

Morden physiological analysis begins to involve more and more types of information. Electroencephalogram (EEG) signals as a typical example is starting to be analyzed with facial expressions videos to detect emotions. Emotions play an important role in the daily life of human beings, the need and importance of automatic emotion recognition has grown with increasing role of human computer interface applications. In this paper, we concentrate on recognition of the emotions jointly from "inner" and "outer" reactions, which are electroencephalogram (EEG) signals and facial expression video. Due to the streaming nature of this problem, the data volume and velocity is very challenging. We address these challenges from the theoretic perspective and propose a real time algorithm based on EEG signals and synchronized facial video to learn feature vector jointly. Our algorithm consists of an unsupervisedly EEG dictionary component based on deep learning theorem, and a probability pooling component transforms a continuous sequential signal into an EEG "sentence" which consists of a sequence of EEG words. The EEG sentence is then jointly learned with video features into a new fixed length feature representation for emotion classification. We overcome several computational challenges on the data based on the idea of convolution and pooling, and we conduct extensive evaluation for each component of our model. We also demonstrate the state-of-the-art classification result on real-world dataset. The superior performances on the emotion recognition task indicates that 1) the natural language scenario can be applied in EEG sequences and 2) borrowing video modality can increase the overall performance.
First purification of the antiquitin protein and demonstration of its enzymatic activity (2002)

Antiquitin is an evolutionarily conserved protein believed to play a role in the regulation of cellular turgor. Based on sequence analysis, this protein is classified as a member of the aldehyde dehydrogenase superfamily. All previous studies on antiquitin have been confined to the nucleotide level, and the protein has never been purified and characterized. In the present investigation, the antiquitin protein was purified for the first time. An acetaldehyde-oxidizing protein was isolated from the liver of black seabream (Mylio macrocephalus) by chromatographies on alpha-cyanocinnamate Sepharose and Affi-gel Blue agarose, followed by ammonium sulfate precipitation. The purified protein was identified as antiquitin by the first 18 N-terminal amino acid residues which showed 83.3% identity with the deduced sequence of human antiquitin. Electrophoretic mobility studies indicated that black seabream antiquitin is a tetramer with a subunit molecular mass of 57.5 kDa. Kinetic analysis of the purified protein indicated that it catalyzes the oxidation of acetaldehyde with K(m) and V(max) values of 2.0 mM and 1.3 U/mg, respectively. The longer aliphatic propionaldehyde and the aromatic benzaldehyde are also substrates of the purified enzyme. The enzyme is highly specific towards NAD+ as the coenzyme and is totally inactive towards NADP+. Maximal enzymatic activity was found at about pH 9-10.
Spatial modes-based physical-layer security (2016)

The growth of the Internet traffic does not appear to be levelling off any time soon and it is projected to continue to grow exponentially in the years to come. Although there are many proposals on how to deal with the incoming bandwidth capacity crunch, the security of optical networks seems to be almost completely neglected. By taping out the portion of DWDM signal, the huge amount of data can be compromised. Therefore, the security of future optical networks is becoming one of the major issues to be addressed sooner rather than later. To address the security issues of future optical networks the quantum key distribution (QKD) and chaotic cryptography have been proposed. To avoid the high cost of QKD, the properly designed fiber Bragg gratings (FBGs) as optical encryption devices have been advocated recently. In this invited paper, we follow a different strategy. It is well known that we can associate with a photon both spin angular momentum (SAM), related to polarization; and orbital angular momentum (OAM), related to azimuthal dependence of the complex electric field. Because the OAM eigenstates are orthogonal, this additional degree of freedom can be utilized for the physical-layer security in optical networks. Given that the spatial modes in spatial domain multiplexing (SDM) fibers such as few-mode fibers (FMFs), few-core fibers (FCFs), and few-mode-few-core fibers (FMFCFs) can be decomposed in terms of OAM eigenkets, the OAM can be used to enable the physical-layer security in both fiber-optics- and free-space optics-based optical networks.
Cleavage of Antigen-Bound Immunoglobulin G by SpeB Contributes to Streptococcal Persistence in Opsonizing Blood (2002)

Group A streptococci (GAS) express a superantigen, SpeB, having cysteine protease activity. SpeB exhibits several properties that might contribute to virulence, the most recently discovered being the ability to cleave immunoglobulin G (IgG) in a manner similar to that of papain. In the present study, we confirmed this latter finding and found that the irreversible inhibition of SpeB protease activity completely abolishes IgG cleavage. SpeB cleavage of IgG was not species restricted since SpeB cleaved both human, rabbit, and mouse IgG. In order to investigate the nature of the SpeB cleavage of IgG, antibodies were immobilized prior to exposure to SpeB, either by unspecific binding of the Fc to GAS surface proteins or by antigen-specific binding. Analysis of the IgG molecules by SDS-PAGE showed that SpeB could cleave antigen-bound antibodies, while the IgG bound to IgG-binding proteins was protected from cleavage. In a phagocytosis assay using whole blood, the M49 GAS strain NZ131 showed a significantly higher survival than its isogenic speB mutant. Furthermore, the addition of extracellular supernatant derived from an overnight culture of native NZ131 increased the survival of its isogenic speB derivative. This indicates that SpeB's ability to cleave off the Fc part of antigen-bound IgG contributes to GAS escape from opsonophagocytosis while not interfering with the formation of a host-like coat by unspecific IgG binding.
Quantitative evaluation of passage retrieval algorithms for question answering (2003)

Passage retrieval is an important component common to many question answering systems. Because most evaluations of question answering systems focus on end-to-end performance, comparison of common components becomes difficult. To address this shortcoming, we present a quantitative evaluation of various passage retrieval algorithms for question answering, implemented in a framework called Pauchok. We present three important findings: Boolean querying schemes perform well in the question answering task. The performance differences between various passage retrieval algorithms vary with the choice of document retriever, which suggests significant interactions between document retrieval and passage retrieval. The best algorithms in our evaluation employ density-based measures for scoring query terms. Our results reveal future directions for passage retrieval and question answering.
A 2B parallel 1.25 Gb/s interconnect I/O interface with self-configurable link and plesiochronous clocking (2003)

An I/O transceiver for scalable multiprocessor systems with 1.25 Gb/s parallel bandwidth and 7.7 ns latency performs as a plesiochronous link and compensates for skin-effect cable loss and inter-wiring skew across 20 m cable connections. Phase-interpolator-based clock recovery integrates multiple I/O links that can tolerate slight differences in frequencies between incoming and internal reference clocks. A differential partial-response detection (DPRD) receiver ensures low latency equalization for skin-effect cable loss of up to 10 dB. The receivers are equipped with deskew circuitry to tolerate up to 6.4 ns inter-wiring skew for 20 data bits. The data rate, driver output level, and receiver clock phase are adjusted automatically by a logic sequencer, basic control, which maximizes data rate and minimizes power consumption without external manual adjustment, adapting from onboard PCB traces to 20 m twisted-pair cables.
Targeting FGFR Signaling in Cancer (2015)

The fibroblast growth factor signaling pathway (FGFR signaling) is an evolutionary conserved signaling cascade that regulates several basic biologic processes, including tissue development, angiogenesis, and tissue regeneration. Substantial evidence indicates that aberrant FGFR signaling is involved in the pathogenesis of cancer. Recent developments of deep sequencing technologies have allowed the discovery of frequent molecular alterations in components of FGFR signaling among several solid tumor types. Moreover, compelling preclinical models have demonstrated the oncogenic potential of these aberrations in driving tumor growth, promoting angiogenesis, and conferring resistance mechanisms to anticancer therapies. Recently, the field of FGFR targeting has exponentially progressed thanks to the development of novel agents inhibiting FGFs or FGFRs, which had manageable safety profiles in early-phase trials. Promising treatment efficacy has been observed in different types of malignancies, particularly in tumors harboring aberrant FGFR signaling, thus offering novel therapeutic opportunities in the era of precision medicine. The most exciting challenges now focus on selecting patients who are most likely to benefit from these agents, increasing the efficacy of therapies with the development of novel potent compounds and combination strategies, and overcoming toxicities associated with FGFR inhibitors. After examination of the basic and translational research studies that validated the oncogenic potential of aberrant FGFR signaling, this review focuses on recent data from clinical trials evaluating FGFR targeting therapies and discusses the challenges and perspectives for the development of these agents.
Role of Corticotropin-Releasing Factor Receptors Type 1 and 2 in Modulating the Rat Adrenocorticotropin Response to Stressors (2003)

We investigated the contribution of corticotropin-releasing factor (CRF) receptors types 1 and 2 (CRF(1) and CRF(2)) in mediating the ACTH response to shock, alcohol injection, or endotoxemia in the rat. Peptidic (Astressin B and Astressin(2)-B) and nonpeptidic (NBI 30775) CRF antagonists were injected iv before the stressors at doses previously shown to be effective in blocking the corresponding receptors. Because NBI 30775, which specifically blocks CRF(1), penetrates the brain following systemic injection, we also compared its effect with that of Astressin B, which primarily, though not exclusively, targets CRF(1) but does not cross the blood-brain barrier. Shocks, alcohol (4.5 g/kg, intragastrically) or lipopolysaccharide (LPS, 1 micro g/kg, iv) all significantly released ACTH. Astressin B or NBI 30775 markedly decreased the effect of shocks or alcohol and also interfered, though less significantly so, with the influence of LPS. In contrast, specific blockade of CRF(2) with Astressin(2)-B, although not significantly altering the overall ACTH response to shocks, alcohol, or LPS, slightly enhanced ACTH levels during the early phase of some of these responses. Interestingly, combined administration of NBI 30775 and Astressin(2)-B decreased ACTH levels more than NBI 30775 alone, although this difference did not reach statistical significance. Finally, blockade of CRF(1) and/or CRF(2) augmented LPS- induced TNF-alpha and IL-6 release. Collectively, there results confirm the critical role played by CRF(1) in mediating the ACTH response to shocks, alcohol and LPS, whereas the influence of CRF(2) remains subtle. Finally, we showed that peripheral endogenous CRF restrains the ability of LPS to release cytokines.
Prodomain Processing of Asp1 (BACE2) Is Autocatalytic (2001)

Generation of the amyloid peptide through proteolytic processing of the amyloid precursor protein by beta- and gamma-secretases is central to the etiology of Alzheimer's disease. The highly elusive beta-secretase was recently identified as a transmembrane aspartic proteinase, Asp2 (BACE). The Asp2 homolog Asp1 (BACE2/DRAP) has also been reported to exhibit beta-secretase cleavage of amyloid precursor protein. Most aspartic proteinases are generated as inactive proenzymes, requiring removal of the prodomain to generate active proteinase. Here we show that prodomain processing of Asp1 occurs between Leu(62) and Ala(63) and is autocatalytic. Asp1 cleaved a maltose-binding protein-Asp1 prodomain fusion protein and a synthetic peptide at this site. Mutation of one of the conserved catalytic aspartic acid residues in the active site of Asp1 to asparagine (D110N) abolished this cleavage. Mutation of P(1)' and P(2)' residues in the substrate to phenylalanine reduced cleavage at this site. Asp1 expressed in cells was the mature form, and prodomain processing occurred intramolecularly within the endoplasmic reticulum/early Golgi. Interestingly, a proportion of mature Asp1 was expressed on the cell surface. When full-length Asp1(D110N) was expressed in COS-7 cells, it was not processed, suggesting that no other proteinase can activate Asp1 in these cells.
Zeta-Potential Measurements of Surfactant-Wrapped Individual Single-Walled Carbon Nanotubes (2007)

A systematic study of the zeta (ζ)-potential distribution of surfactant-wrapped individual single-walled carbon nanotubes (SWNTs) dissolved in water is presented here. The surface charge on the SWNT micelles, as measured by the ζ-potential, has implications for the stability of the dispersions and for the electrophoretic and dielectrophoretic assembly and alignment of SWNTs. Very highly charged SWNTs are obtained by dispersing the nanotubes in high concentrations of anionic and cationic surfactants, whereas almost neutral SWNTs are obtained by using non-ionic surfactants. The ζ-potential of the dissolved SWNTs is tuned by adjusting the surfactant concentration, the alkyl chain length of the surfactant molecule, and the solution pH in different surfactant−SWNT systems.
Synthesis of Foot-and-mouth Disease Virus Capsid Proteins in Insect Cells Using Baculovirus Expression vectors (1990)

Foot-and-mouth disease virus (FMDV) cDNA cassettes containing sequences encoding the capsid precursor P1-2A with and without those encoding the proteases L and 3C were introduced into Autographa californica nuclear polyhedrosis virus (AcMNPV) expression vectors. Procapsid proteins 1AB, 1C and 1D were produced in cells infected with recombinant baculoviruses, when L and 3C were present in the constructs, indicating that these FMDV proteases were active in insect cells. Unlike P1 processing in poliovirus, which has been shown to be catalysed mainly by the 3CD gene product, the 3C protease of FMDV was able to process P1 independently of 3D. Cytotoxicity of the L protease for insect cells prevented the use of the optimized transfer vector, pAcRP23, for inserting L-containing cassettes into AcMNPV. By contrast, viable AcMNPV-FMDV recombinants could be made without restriction on choice of the transfer vector when the L gene was either not expressed or inactivated by an inframe deletion. In the latter case, normal cleavage at the L-P1 junction no longer occurred in cis, and a new processing event, probably catalysed by 3C, was observed within the C-terminal region of the residual L protein. Analysis of baculovirus-expressed products in sucrose gradients showed that a fraction of the capsid proteins is present in an aggregated form, migrating at 70S and possibly resembling FMDV empty capsid particles.
Tailoring lipase specificity by solvent and substrate chemistries (1993)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTTailoring lipase specificity by solvent and substrate chemistriesSanghamitra Parida and Jonathan S. DordickCite this: J. Org. Chem. 1993, 58, 12, 3238–3244Publication Date (Print):June 1, 1993Publication History Published online1 May 2002Published inissue 1 June 1993https://pubs.acs.org/doi/10.1021/jo00064a008https://doi.org/10.1021/jo00064a008research-articleACS PublicationsRequest reuse permissionsArticle Views307Altmetric-Citations85LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
FLT3 Inhibition as Therapy in Acute Myeloid Leukemia: A Record of Trials and Tribulations (2011)

Acute myeloid leukemia (AML) is a hematologic malignancy with a poor prognosis. Approximately one quarter of the patients with AML also carry an internal tandem duplication (ITD) mutation in the gene encoding FMS-like tyrosine kinase 3 (FLT3), which has a significantly deleterious impact on prognosis. The ITD mutation renders FLT3 constitutively active and leads to uncontrolled proliferation of the leukemic blast. Over the course of the last decade, a variety of compounds have been developed in preclinical and clinical studies as potent inhibitors of FLT3. Many of the earlier agents under investigation, such as lestaurtinib, midostaurin, and sunitinib, were initially developed as inhibitors of other tyrosine kinases and as targeted therapies in a variety of malignancies. These compounds have been demonstrated to have some efficacy in clinical trials of AML, mainly manifesting as transient decreases in circulating blasts correlating with effective in vivo suppression of the FLT3 target. Nevertheless, the cumbersome pharmacokinetics of some compounds and the suboptimal specificity and potency of others have limited their therapeutic efficacy. In the last few years, newer, more potent and specific agents have been under investigation, with the leading example being AC220. This agent has shown significant promise in early phases of clinical investigation, and is currently in more advanced clinical trials. Hope remains that FLT3 inhibition will be become an effective therapeutic adjunct to our current treatment approach to AML.
Foxa2 regulates alveolarization and goblet cell hyperplasia (2004)

The airways are lined by several distinct epithelial cells that play unique roles in pulmonary homeostasis; however, the mechanisms controlling their differentiation in health and disease are poorly understood. The winged helix transcription factor, FOXA2, is expressed in the foregut endoderm and in subsets of respiratory epithelial cells in the fetal and adult lung. Because targeted mutagenesis of the Foxa2 gene in mice is lethal before formation of the lung, its potential role in lung morphogenesis and homeostasis has not been determined. We selectively deleted Foxa2 in respiratory epithelial cells in the developing mouse lung. Airspace enlargement, goblet cell hyperplasia, increased mucin and neutrophilic infiltration were observed in lungs of the Foxa2-deleted mice. Experimental goblet cell hyperplasia caused by ovalbumin sensitization, interleukin 4 (IL4), IL13 and targeted deletion of the gene encoding surfactant protein C (SP-C), was associated with either absent or decreased expression of Foxa2 in airway epithelial cells. Analysis of lung tissue from patients with a variety of pulmonary diseases revealed a strong inverse correlation between FOXA2 and goblet cell hyperplasia. FOXA2 is required for alveolarization and regulates airway epithelial cell differentiation in the postnatal lung.