gebhart/patrepeval huggingface dataset:
Serum glutathione-s-transferase-π as a tumor marker for gastrointestinal malignancies (1989)

A glutathione-S-transferase-pi (GST-pi) immunoradiometric assay was devised as a potential marker for serodiagnosis of malignant disease. Elevated serum GST-pi levels were observed in patients with various gastrointestinal malignancies including gastric, esophageal, colonic, pancreatic, hepatocellular, and biliary tract cancers. Patients with benign gastrointestinal diseases had normal GST-pi, but some patients with chronic hepatitis and cirrhosis had slightly elevated levels. Over 80% of patients with Stage III or IV gastric cancer and even about 50% of those with Stage I and II had elevated serum GST-pi. After surgery serum GST-pi levels returned to normal. Resected stomach cancers were immunohistochemically positive for GST-pi. During chemotherapy of colonic, gastric, and hepatocellular cancers with a series of different drugs, GST-pi changed in a biphasic manner; increases during initial phases of therapy may reflect acquisition of drug resistance by the tumor. In general, serum GST-pi assays provide a sensitive and reliable marker for gastrointestinal malignancies.
Correspondence (1988)

Contrast Media Laboratory, Department of Radiology, University of California San Francisco, San Francisco, California
TRX-E-002-1 Induces c-Jun–Dependent Apoptosis in Ovarian Cancer Stem Cells and Prevents Recurrence In Vivo (2016)

Chemoresistance is a major hurdle in the management of patients with epithelial ovarian cancer and is responsible for its high mortality. Studies have shown that chemoresistance is due to the presence of a subgroup of cancer cells with stemness properties and a high capacity for tumor repair. We have developed a library of super-benzopyran analogues to generate potent compounds that can induce cell death in chemoresistant cancer stem cells. TRX-E-002-1 is identified as the most potent analogue and can induce cell death in all chemoresistant CD44(+)/MyD88(+) ovarian cancer stem cells tested (IC50 = 50 nmol/L). TRX-E-002-1 is also potent against spheroid cultures formed from cancer stem cells, chemosensitive CD44(-)/MyD88(-) ovarian cancer cells, and heterogeneous cultures of ovarian cancer cells. Cell death was associated with the phosphorylation and increased levels of c-Jun and induction of caspases. In vivo, TRX-E-002-1 given as daily intraperitoneal monotherapy at 100 mg/kg significantly decreased intraperitoneal tumor burden compared with vehicle control. When given in combination with cisplatin, animals receiving the combination of cisplatin and TRX-E-002-1 showed decreased tumor burden compared with each monotherapy. Finally, TRX-E-002-1 given as maintenance treatment after paclitaxel significantly delayed disease recurrence. Our results suggest that TRX-E-002-1 may fill the current need for better therapeutic options in the control and management of recurrent ovarian cancer and may help improve patient survival. Mol Cancer Ther; 15(6); 1279-90. ©2016 AACR.
The UDP-glucose:p-Hydroxymandelonitrile-O-Glucosyltransferase That Catalyzes the Last Step in Synthesis of the Cyanogenic Glucoside Dhurrin in Sorghum bicolor (1999)

The final step in the biosynthesis of the cyanogenic glucoside dhurrin in Sorghum bicolor is the transformation of the labile cyanohydrin into a stable storage form by O-glucosylation of (S)-p-hydroxymandelonitrile at the cyanohydrin function. The UDP-glucose:p-hydroxymandelonitrile-O-glucosyltransferase was isolated from etiolated seedlings of S. bicolor employing Reactive Yellow 3 chromatography with UDP-glucose elution as the critical step. Amino acid sequencing allowed the cloning of a full-length cDNA encoding the glucosyltransferase. Among the few characterized glucosyltransferases, the deduced translation product showed highest overall identity to Zea mays flavonoid-glucosyltransferase (Bz-Mc-2 allele). The substrate specificity of the enzyme was established using isolated recombinant protein. Compared with endogenous p-hydroxymandelonitrile, mandelonitrile, benzyl alcohol, and benzoic acid were utilized at maximum rates of 78, 13, and 4%, respectively. Surprisingly, the monoterpenoid geraniol was glucosylated at a maximum rate of 11% compared with p-hydroxymandelonitrile. The picture that is emerging regarding plant glucosyltransferase substrate specificity is one of limited but extended plasticity toward metabolites of related structure. This in turn ensures that a relatively high, but finite, number of glucosyltransferases can give rise to the large number of glucosides found in plants.
TP53 mutations are frequent in malignant NFI tumors (1994)

Neurofibromatosis type I (NFI) is a common autosomal dominant disorder with an increased risk for developing benign and malignant tumors. The NFI gene has been cloned and maps to 17q11.2, and the gene product acts as a tumor suppressor gene. Here we analyzed the role of mutations in TP53 in four malignant NFI tumors. Mutations were found in 3 out of 4 tumors. One of these mutations is a common missense mutation in codon 278 in one of the previously identified hot spots for mutations. The two other are hitherto unreported mutations, including a splice mutation of exon 3 and a nonsense mutation in exon 4. In addition, these four tumors also showed loss of heterozygosity (LOH) for markers on chromosome 17 in the region of TP53. Malignant NFI tumors are initiated by a somatic inactivation of the second NFI allele. Tumor progression, however, occurs by accumulation of additional genetic abnormalities, such as homozygous inactivation of TP53, as demonstrated in this paper.
Efficacy of combination of 0.2% GTN and lignocaine ointments in wound healing and pain relief after Milligan Morgan hemorrhoidectomy – A comparison with lignocaine and 0.2% GTN ointments separately (2014)

The combination of 0.2% GTN and 2% lignocaine showed better pain relief resulting in less use of oral analgesics and faster healing of the wound after Milligan Morgan hemorrhoidectomy.
Efficient Bragg grating fabrication in a fibre throughits polymer jacket using near-UV light (1997)

A 20% reflectivity Bragg grating is demonstrated by shining 334 nm light right through the regular polymer jacket of a boron co-doped germanosilicate fibre. Stripping and recoating of the fibre is eliminated.
Towards Robust Neural Networks via Random Self-ensemble (2017)

Recent studies have revealed the vulnerability of deep neural networks: A small adversarial perturbation that is imperceptible to human can easily make a well-trained deep neural network misclassify. This makes it unsafe to apply neural networks in security-critical applications. In this paper, we propose a new defense algorithm called Random Self-Ensemble (RSE) by combining two important concepts: {\bf randomness} and {\bf ensemble}. To protect a targeted model, RSE adds random noise layers to the neural network to prevent the strong gradient-based attacks, and ensembles the prediction over random noises to stabilize the performance. We show that our algorithm is equivalent to ensemble an infinite number of noisy models $f_ε$ without any additional memory overhead, and the proposed training procedure based on noisy stochastic gradient descent can ensure the ensemble model has a good predictive capability. Our algorithm significantly outperforms previous defense techniques on real data sets. For instance, on CIFAR-10 with VGG network (which has 92\% accuracy without any attack), under the strong C\&amp;W attack within a certain distortion tolerance, the accuracy of unprotected model drops to less than 10\%, the best previous defense technique has $48\%$ accuracy, while our method still has $86\%$ prediction accuracy under the same level of attack. Finally, our method is simple and easy to integrate into any neural network.
Phosphoric and boric acid activation of pine sawdust (2003)

Abstract Chemical activation of pine sawdust using aqueous solutions of phosphoric and boric acid was studied. Thermogravimetric analyses of the impregnated lignocellulosic precursor as well as their reactivities are presented. The role of the activating agents in the thermal decomposition of the precursor and their effects on the development of porosity in activated carbons is discussed. The use of boric acid as activating agent and a final heat treatment temperature (HTT) of 600 °C produced some porosity and activated carbons with a surface area of 600 m 2 g −1 . With a HTT of 450 °C, molecular sieve‐like materials were produced. In contrast, phosphoric acid activation produced activated carbons with high surface areas. The amount of phosphoric acid retained in the precursor was, as expected, a function of the initial concentration as well as the impregnation time and temperature. The fact that the activated carbon porosity increases with the phosphoric acid content per gram of precursor was confirmed. The use of 6 M phosphoric acid solution and HTT of 450 °C produced the activated carbon with the highest surface area, about 1600 m 2 g −1 . The high degree of microporosity which developed in phosphoric acid‐activated carbons is related to the low reactivity during the thermal treatment of chemical activation. The presence of up to 10% oxygen during HTT with phosphoric acid activation caused only small textural changes. Copyright © 2003 Society of Chemical Industry
Role of inflammation in the pathogenesis of diabetic retinopathy (2012)

Diabetic retinopathy (DR) remains a major cause of worldwide preventable blindness. The microvasculature of the retina responds to hyperglycemia through a number of biochemical changes, including activation of protein kinase C, increased advanced glycation end products formation, polyol pathway, and oxidative stress, and activation of the renin angiotensin system (RAS). There is an accumulating body of evidence that inflammation plays a prominent role in the pathogenesis of DR.
Potential role of glycogen synthase kinase-3 in skeletal muscle insulin resistance of type 2 diabetes. (2000)

Glycogen synthase (GS) activity is reduced in skeletal muscle of type 2 diabetes, despite normal protein expression, consistent with altered GS regulation. Glycogen synthase kinase-3 (GSK-3) is involved in regulation (phosphorylation and deactivation) of GS. To access the potential role of GSK-3 in insulin resistance and reduced GS activity in type 2 diabetes, the expression and activity of GSK-3 were studied in biopsies of vastus lateralis from type 2 and nondiabetic subjects before and after 3-h hyperinsulinemic (300 mU x m(-2) x min(-1))-euglycemic clamps. The specific activity of GSK-3alpha did not differ between nondiabetic and diabetic muscle and was decreased similarly after 3-h insulin infusion. However, protein levels of both alpha and beta isoforms of GSK-3 were elevated (approximately 30%) in diabetic muscle compared with lean (P < 0.01) and weight-matched obese nondiabetic subjects (P < 0.05) and were unchanged by insulin infusion. Thus, both basal and insulin-stimulated total GSK-3 activities were elevated by approximately twofold in diabetic muscle. GSK-3 expression was related to in vivo insulin action, as GSK-3 protein was negatively correlated with maximal insulin-stimulated glucose disposal rates. In summary, GSK-3 protein levels and total activities are 1) elevated in type 2 diabetic muscle independent of obesity and 2) inversely correlated with both GS activity and maximally insulin-stimulated glucose disposal. We conclude that increased GSK-3 expression in diabetic muscle may contribute to the impaired GS activity and skeletal muscle insulin resistance present in type 2 diabetes.
Real time on-chip sequential adaptive principal component analysis for data feature extraction and image compression (2004)

In this paper, we present a new, simple, and optimized hardware architecture sequential learning technique for adaptive Principle Component Analysis (PCA) which will help optimize the hardware implementation in VLSI and to overcome the difficulties of the traditional gradient descent in learning convergence and hardware implementation.
Quantitative promoter analysis in Physcomitrella patens: a set of plant vectors activating gene expression within three orders of magnitude (2004)

We developed a vector set that enables gene expression studies, both in lower and higher land plants, thus providing valuable tools applicable in both basic and applied molecular research.
Inhibition of cell adhesion by a synthetic polymer adsorbed to glass shown under defined hydrodynamic stress (1987)

A co-polymer with hydrophobic and hydrophilic segments was allowed to adsorb from aqueous solution onto glass previously made hydrophobic by derivatization with octadecyl dimethylchlorosilane. The polymer is thought to adsorb via its hydrophobic segments, leaving the hydrophilic segments free to extend into the water. After allowing cells to settle on the treated surface, the shear stress at the chamber wall required to remove red blood cells, Dictyostelium discoideum amoebae and Escherichia coli was determined in a calibrated laminar flow chamber. On octadecyl glass a shear stress of 2-3 Nm-2 evicts 50% of adherent red cells and E. coli. No D. discoideum amoebae could be removed at 5Nm-2. In striking contrast, the lowest experimentally obtainable shear stress of 0.03 Nm-2 removes 97.0-99.5% of cells of all three types from the polymer-treated surface, even after a cell residence time of 1 h without flow in the absence of free polymer. The minimum shear stress of 0.03Nm-2 corresponds to only approximately equal to 20 times the force of gravity on a red cell. The mechanism of action of the polymer and the implications of the results are discussed.
Shadow detection algorithms for traffic flow analysis: a comparative study (2002)

Shadow detection is critical for robust and reliable vision-based systems for traffic flow analysis. In this paper we discuss various shadow detection approaches and compare two critically. The goal of these algorithms is to prevent moving shadows being misclassified as moving objects (or parts of them), thus avoiding the merging of two or more objects into one and improving the accuracy of object localization. The environment considered is an outdoor highway scene with multiple lanes observed by a single fixed camera. The important features of shadow detection algorithms and the parameter set-up are analyzed and discussed. A critical evaluation of the results both in terms of accuracy and in terms of computational complexity are outlined. Finally, possible integration of the two approaches into a robust shadow detector is presented as future direction of our research.
Concurrent multiband low-noise amplifiers-theory, design, and applications (2002)

The concept of concurrent multiband low-noise-amplifiers (LNAs) is introduced. A systematic way to design concurrent multiband integrated LNAs in general is developed. Applications of concurrent multiband LNAs in concurrent multiband receivers together with receiver architecture are discussed. Experimental results of a dual-band LNA implemented in a 0.35-/spl mu/m CMOS technology as a demonstration of the concept and theory is presented.
Applying Relief Mapping on Augmented Reality (2015)

Augmented Reality is a variation of Virtual Environment (VE) in Virtual Reality (VR). Virtual Reality technologies Virtual Environment makes user experiences immersion inside a synthetic environment and user cannot see the real world. In contrast, Augmented Reality (AR) medium of information added to the real world in registration with the world to combine virtual objects and real world. Technically, Augmented Reality is able to enhance all five senses by adding digital or computer generated information such as images, audio, video, interaction and overlaying them over in physical world. Its most commonly use is visual. Augmented Reality allows the user to see the virtual object blended in real world environment. To apply Augmented Reality to applications used for illustration the architecture or infrastructure of building, 3D visual model is a content which is good way to show obviously architecture's element because it is able to display the appearance of each building part separately responding to camera perspective in real-time. That means AR system have to re-render the digital object every time the viewer changes position even a tiny bit as temporal registration. Therefore, the computations for three-dimensional computer graphics must be considered about rendering system on the observed devices because time lags could be occurred when lacking computational speed while it is operating the imagery overlay on the top of the physical world for each frame. There are mainly constraints that are limited the AR system performance such as limited memory and limited computational capability. To enhance the limitations of handheld devices, this research applies Relief Mapping algorithm to 3D model in Augmented Reality technology to reduce the number of polygons on the facade of Sino Portuguese Architecture which consist of many bas-relief patterns on their facades. Our system uses game engine, Unity3D, for real-time rendering and Vuforia SDK implemented augmented reality application on handheld device. The result of the research after applying Relief Mapping technique instead of using the conventional modeling creation, more than 80,000 polygons/ 1 bas-relief, is to create by having a single polygon per a bas-relief and the quality of visualization is compatible to each other on AR application.
Concentration of lead, cadmium, mercury and arsenic in leg skeletal muscles of three species of wild birds (2010)

The aim of this study was to monitor accumulation of lead, cadmium, mercury and arsenic in leg skeletal muscle of some wild birds from selected areas of Slovakia and the correlations among the heavy metals. A total of 160 wild birds representing 3 species-Eurasian coot (Fulica atra) (n = 24), mallard (Anas platyrhynchos) (n = 68) and pheasant (Phasianus colchicus) (n = 68) were involved for analyses. Concentrations of heavy metals from samples were measured using atomic absorption spectrophotometry (AAS). Metal concentrations are expressed as mg/kg wet weight. The order of lead and arsenic concentrations in muscles of wild birds were as follows: mallard > pheasant > Eurasian coot; in the case of arsenic the differences were significant (P < 0.05). Muscle of Eurasian coot accumulated the highest concentration of cadmium and mercury followed by pheasant and the lowest in mallard, but differences were not significant (P > 0.05). Moderately negative correlations were noted in pheasant between cadmium and mercury (r = -0.39), and between mercury and arsenic (r = -0.45). Moderately negative correlation between cadmium and arsenic (r = -0.31) was found for Eurasian coot.
Role of RgpA, RgpB, and Kgp Proteinases in Virulence of Porphyromonas gingivalis W50 in a Murine Lesion Model (2001)

Extracellular Arg-x- and Lys-x-specific cysteine proteinases are considered important virulence factors and pathogenic markers for Porphyromonas gingivalis, a bacterium implicated as a major etiological agent of chronic periodontitis. Three genes. rgpA, rgpB, and kgp, encode an Arg-x-specific proteinase and adhesins (RgpA), an Arg-x-specific proteinase (RgpB), and a Lys-x-specific proteinase and adhesins (Kgp), respectively. The contribution to pathogenicity of each of the proteinase genes of P. gingivalis W50 was investigated in a murine lesion model using isogenic mutants lacking RgpA, RgpB, and Kgp. Whole-cell Arg-x-specific proteolytic activity of both the RgpA(-) and RgpB(-) isogenic mutants was significantly reduced (3- to 4-fold) relative to that of the wild-type W50. However, for the Kgp(-) isogenic mutant, whole-cell Arg-x activity was similar to that of the wild-type strain. Whole-cell Lys-x proteolytic activity of the RgpA(-) and RgpB(-) mutants was not significantly different from that of wild-type W50, whereas the Kgp(-) mutant was devoid of Lys-x whole-cell proteolytic activity. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis and Western blot analysis using proteinase-specific antibodies of cell sonicates of the wild-type and mutant strains showed that the proteinase catalytic domain of each of the mutants was not expressed. This analysis further showed that RgpB appeared as 72- and 80-kDa bands, and the catalytic domains of RgpA and Kgp appeared as processed 45-kDa and 48-kDa bands, respectively. In the murine lesion model, mice were challenged with three doses of each mutant and wild-type strain. At the lower dose (3.0 x 10(9) viable-cells), no lesions were recorded for each of the mutants, whereas wild-type W50 induced large ulcerative lesions. At a dose of 6.0 x 10(9) viable-cells, all the mice challenged with the wild-type strain died, whereas mice challenged with the RgpA(-) and RgpB(-) isogenic mutants did not die but developed lesions. Mice challenged with the Kgp(-) isogenic mutant at this dose did not develop lesions. At a 1.2 x 10(10) viable-cell dose, only 40% of mice challenged with the Kgp(-) mutant developed lesions, and these lesions were significantly smaller than lesions induced by the wild-type strain at the 3.0 x 10(9) viable-cell dose. All the mice challenged with the RgpA(-) mutant died at the 1.2 x 10(10) viable-cell dose, whereas only 20% died when challenged with the RgpB(-) mutant at this dose. Wild-type phenotype was restored to the RgpB(-) mutant by complementation with plasmid pNJR12::rgpB containing the rgpB gene. There was no difference between the pNJR12::rgpB-complemented RgpB(-) mutant and the wild-type W50 strain in whole-cell Arg-x activity, protein profile, or virulence in the murine lesion model. These results show that the three proteinases, RgpA, RgpB, and Kgp, all contributed to virulence of P. gingivalis W50 in the murine lesion model and that the order in which they contributed was Kgp >> RgpB > or = RgpA.
PHASE I TRIAL OF HuM291, A HUMANIZED ANTI-CD3 ANTIBODY, IN PATIENTS RECEIVING RENAL ALLOGRAFTS FROM LIVING DONORS1 (2000)

A single HuM291 dose rapidly depleted circulating T cells in a dose-dependent manner and was associated with only mild to moderate symptoms of cytokine release.
A low-phase-noise 18 GHz Kerr frequency microcomb phase-locked over 65 THz (2015)

Laser frequency combs are coherent light sources that simultaneously provide pristine frequency spacings for precision metrology and the fundamental basis for ultrafast and attosecond sciences. Recently, nonlinear parametric conversion in high-Q microresonators has been suggested as an alternative platform for optical frequency combs, though almost all in 100 GHz frequencies or more. Here we report a low-phase-noise on-chip Kerr frequency comb with mode spacing compatible with high-speed silicon optoelectronics. The waveguide cross-section of the silicon nitride spiral resonator is designed to possess small and flattened group velocity dispersion, so that the Kerr frequency comb contains a record-high number of 3,600 phase-locked comb lines. We study the single-sideband phase noise as well as the long-term frequency stability and report the lowest phase noise floor achieved to date with -130 dBc/Hz at 1 MHz offset for the 18 GHz Kerr comb oscillator, along with feedback stabilization to achieve frequency Allan deviations of 7 × 10(-11) in 1 s. The reported system is a promising compact platform for achieving self-referenced Kerr frequency combs and also for high-capacity coherent communication architectures.
Sampling the Antibiotic Resistome (2006)

Microbial resistance to antibiotics currently spans all known classes of natural and synthetic compounds. It has not only hindered our treatment of infections but also dramatically reshaped drug discovery, yet its origins have not been systematically studied. Soil-dwelling bacteria produce and encounter a myriad of antibiotics, evolving corresponding sensing and evading strategies. They are a reservoir of resistance determinants that can be mobilized into the microbial community. Study of this reservoir could provide an early warning system for future clinically relevant antibiotic resistance mechanisms.