gebhart/patrepeval huggingface dataset:
Study of the Relationship Between the Neurotransmitter Store and Adrenergic Nerve Block Induced by Reserpine and Guanethidine (1963)

The heart rate response to cardioaccelerator nerve stimulation and the corresponding levels of myocardial norepinephrine content were determined and correlated in dogs at various time intervals following the intravenous injection of either 3 mg/kg reserpine, or 10 mg/kg guanethidine. Guanethidine produced complete blockade of the cardiac accelerator response before producing measurable myocardial depletion of norepinephrine. In contrast, reserpine reduced the positive chronotropic response to cardioaccelerator nerve stimulation only after myocardial norepinephrine levels have been reduced to approximately 0.3 µg/g. An infusion of norepinephrine did not restore the heart rate response to cardioaccelerator nerve stimulation in either the reserpine or guanethidine treated dogs. These data suggest that the interference with adrenergic transmission produced by guanethidine is independent of changes in the level of stored adrenergic transmitter. The reserpine-induced blockade of adrenergic transmission may ultimately be dependent upon the mission may ultimately be dependent upon the depletion of adrenergic transmitter, but almost complete depletion of stored adrenergic transmitter must occur before reserpine-induced adrenergic blockade occurs.
Design of solid and microstructure fibers for suppression of higher-order modes (2005)

Hole-assisted fibers have been proposed for a number of applications, including low-bend-loss access transmission. Suppression of higher-order modes is essential in these designs, and is explained here as the result of index-matched coupling between core and cladding modes. This physical principle is shown to explain previous empirically optimized designs, and enables intuitive generalizations. The improved tradeoff between bend loss and suppression of higher-order modes in these designs is discussed. Novel solid and microstructure fiber designs with suppressed higher-order modes illustrate these principles.
Encapsulation of Carbon Black by Miniemulsion Polymerization (2001)

Full Paper: In this paper the effective encapsulation of carbon black with polymers by co-sonication of a carbon black dispersion and a typical miniemulsion polymerization recipe is described. The carbon containing polymer particles are analyzed in detail by particle size measurements, transmission electron microscopy, density distributions experiments with the ultracentrifuge, and by nitrogen adsorption. The final particle size was in the range of 50 to 170 nm, the weight ratio polymer to carbon was changed between 20 : 80 and 90 : 10. In all cases, the surface tension of the final dispersion is above the minimal surface tension of SDS indicating the absence of micelles and the incomplete coverage of the polymer coated carbon particles with surfactant. The amount and type of an added hydrophobe needed for osmotic stabilization as well as the type of monomer have a large influence on the encapsulation process. The encapsulation process can be described by a scenario where the fusion/fission by ultrasound splits the monomer droplets, whereas the monomer coated carbon stays intact. The thickness of the monomer film depends on the amount of monomer and has to be optimized since there is an optimal range of monomer layer thickness in order to preserve the morphology. Too low amounts of monomer result in incompletely covered particles which aggregate with polymer whereas too much monomer results in the formation of a second species of pure polymer particles. The process can be described as a polymerization in an adsorbed monomer layer created and stabilized as a miniemulsion (“ad-miniemulsion polymerization”).
Fast Construction of Covariance Matrices for Arbitrary Size Image Windows (2006)

We propose an integral image based algorithm to extract feature covariance matrices of all possible rectangular regions within a given image. Covariance is an essential indicator of how much the deviation of two or more variables match. In our case, these variables correspond to point-wise features, e.g. coordinates, color values, gradients, edge magnitude and orientation, local histograms, filter responses, etc. We significantly improve the speed of the covariance computation by taking advantage of the spatial arrangement of image points using integral images, which are intermediate representations used for calculation of region sums. Each point of the integral image corresponds to the summation of all point values inside the feature image rectangle bounded by the upper left corner and the point of interest. Using this representation, any rectangular region sum can be computed in constant time. We follow a similar idea for fast calculation of region covariance. We construct integral images for all separate features as well as integral images of the multiplication of any two feature combinations. Using these set of integral images and region corner point coordinates, we directly extract the covariance matrix coefficients. We show that the proposed method reduces the computational load to quadratic time.
Personalized protein coronas: a “key” factor at the nanobiointerface (2014)

It is now well known that the primary interactions of biological entities (e.g., tissues and cells) with nanoparticles (NPs) are strongly influenced by the protein composition of the "corona" (i.e., the NP surface attached proteins). The composition of the corona strongly depends on the protein source (e.g., human plasma). Because the protein source determines the NP corona, it is reasonable to hypothesize that humans with specific disease(s) may have specific NP coronas. To test this hypothesis, we incubated two different hydrophobic/hydrophilic types of NPs (polystyrene and silica) with plasma from human subjects with different diseases and medical conditions (e.g., breast cancer, diabetes, hypercholesterolemia, rheumatism, fauvism, smoking, hemodialysis, thalassemia, hemophilia A and B, pregnancy, common cold and hypofibrinogenemia). Our results demonstrate that the type of disease has a crucial role in the protein composition of the NP corona. Based on these results, we introduce the concept of the "personalized protein corona" (PPC) as a determinant factor in nano-biomedical science. This study will help researchers rationally design experiments based on the "personalized protein corona" for clinical and biological applications.
Cardiac Gene Activation Analysis in Mammalian Non-Myoblasic Cells by Nkx2-5, Tbx5, Gata4 and Myocd (2012)

Cardiac transcription factors are master regulators during heart development. Some were shown to transdifferentiate tail tip and cardiac fibroblasts into cardiomyocytes. However, recent studies have showed that controversies exist. Potential difference in tail tip and cardiac fibroblast isolation may possibly confound the observations. Moreover, due to the use of a cardiac reporter (Myh6) selection strategy for induced cardiomyocyte enrichment, and the lack of tracking signals for each transcription factors, individual roles of each transcription factors in activating cardiac gene expression in mammalian non-myoblastic cells have never been elucidated. Answers to these questions are an important step toward cardiomyocyte regeneration. Because mouse 10T1/2 fibroblasts are non-myoblastic in nature and can be induced to express genes of all three types of muscle cells, they are an ideal model for the analysis of cardiac and non-cardiac gene activation after induction. We constructed bi-cistronic lentiviral vectors, capable of expressing cardiac transcription factors along with different fluorescent tracking signals. By infecting 10T1/2 fibroblasts with Nkx2-5, Tbx5, Gata4 or Myocd cardiac transcription factor lentivirus alone or different combinations, we found that only Tbx5+Myocd and Tbx5+Gata4+Myocd combinations induced Myh6 and Tnnt2 cardiac marker protein expression. Microarray-based gene ontology analysis revealed that Tbx5 alone activated genes involved in the Wnt receptor signaling pathway and inhibited genes involved in a number of cardiac-related processes. Myocd alone activated genes involved in a number of cardiac-related processes and inhibited genes involved in the Wnt receptor signaling pathway and non-cardiac processes. Gata4 alone inhibited genes involved in non-cardiac processes. Tbx5+Gata4+Myocd was the most effective activator of genes associated with cardiac-related processes. Unlike Tbx5, Gata4, Myocd alone or Tbx5+Myocd, Tbx5+Gata4+Myocd activated the fewest genes associated with non-cardiac processes. Conclusively, Tbx5, Gata4 and Myocd play different roles in cardiac gene activation in mammalian non-myoblastic cells. Tbx5+Gata4+Myocd activates the most cardiac and the least non-cardiac gene expression.
Bright Three‐Photon Luminescence from Gold/Silver Alloyed Nanostructures for Bioimaging with Negligible Photothermal Toxicity (2010)

Au/Ag alloyed nanostructures exhibit a bright three-photon luminescence (3PL; see picture, left) upon excitation by a femtosecond laser at 1290 nm, with an intensity level one order of magnitude higher than pure Au or Ag nanoparticles. As the excitation is outside the range of plasmon resonance, 3PL enables bioimaging (right) with negligible photothermal toxicity. Detailed facts of importance to specialist readers are published as ”Supporting Information”. Such documents are peer-reviewed, but not copy-edited or typeset. They are made available as submitted by the authors. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
PRL-1, a Unique Nuclear Protein Tyrosine Phosphatase, Affects Cell Growth (1994)

PRL-1 is a particularly interesting immediate-early gene because it is induced in mitogen-stimulated cells and regenerating liver but is constitutively expressed in insulin-treated rat H35 hepatoma cells, which otherwise show normal regulation of immediate-early genes. PRL-1 is expressed throughout the course of hepatic regeneration, and its expression is elevated in a number of tumor cell lines. Sequence analysis reveals that PRL-1 encodes a 20-kDa protein with an eight-amino-acid consensus protein tyrosine phosphatase (PTPase) active site. PRL-1 is able to dephosphorylate phosphotyrosine substrates, and mutation of the active-site cysteine residue abolishes this activity. As PRL-1 has no homology to other PTPases outside the active site, it is a new type of PTPase. PRL-1 is located primarily in the cell nucleus. Stably transfected cells which overexpress PRL-1 demonstrate altered cellular growth and morphology and a transformed phenotype. It appears that PRL-1 is important in normal cellular growth control and could contribute to the tumorigenicity of some cancer cells.
Keratinocyte growth factor is a growth factor for mammary epithelium in vivo. The mammary epithelium of lactating rats is resistant to the proliferative action of keratinocyte growth factor. (1994)

Keratinocyte growth factor (KGF) is a member of the fibroblast growth factor (FGF) family. KGF is secreted by stromal cells and affects epithelial but not mesenchymal cell proliferation. KGF injected intravenously was found to cause dramatic proliferation of mammary epithelium in the mammary glands of rats. KGF causes ductal neogenesis and intraductal epithelial hyperplasia but not lobular differentiation in nulliparous female rats. KGF causes ductal and lobular epithelial hyperplasia in male rats. KGF causes proliferation of ductal and acinar cells in the mammary glands of pregnant rats. On the other hand, the ductal epithelium of lactating postpartum rats is resistant to the proliferative action of KGF. The mammary glands of lactating rats did not express less KGF receptor mRNA than the glands of pregnant rats, suggesting that the resistance of the ductal epithelium to KGF during lactation is not related to KGF receptor mRNA down-regulation. The mammary glands of both pregnant and postpartum lactating rats express KGF mRNA with more KGF present in the glands of lactating rats. In conclusion, the KGF and KGF receptor genes are expressed in rat mammary glands and recombinant KGF is a potent growth factor for mammary epithelium.
PTEN-deficient cancers depend on PIK3CB (2008)

Deregulation of the PI3K signaling pathway is observed in many human cancers and occurs most frequently through loss of PTEN phosphatase tumor suppressor function or through somatic activating mutations in the Class IA PI3K, PIK3CA. Tumors harboring activated p110alpha, the protein product of PIK3CA, require p110alpha activity for growth and survival and hence are expected to be responsive to inhibitors of its lipid kinase activity. Whether PTEN-deficient cancers similarly depend on p110alpha activity to sustain activation of the PI3K pathway has been unclear. In this study, we used a single-vector lentiviral inducible shRNA system to selectively inactivate the three Class IA PI3Ks, PIK3CA, PIK3CB, and PIK3CD, to determine which PI3K isoforms are responsible for driving the abnormal proliferation of PTEN-deficient cancers. Down-regulation of PIK3CA in colorectal cancer cells harboring mutations in PIK3CA inhibited downstream PI3K signaling and cell growth. Surprisingly, PIK3CA depletion affected neither PI3K signaling nor cell growth in 3 PTEN-deficient cancer cell lines. In contrast, down-regulation of the PIK3CB isoform, which encodes p110beta, resulted in pathway inactivation and subsequent inhibition of growth in both cell-based and in vivo settings. This essential function of PIK3CB in PTEN-deficient cancer cells required its lipid kinase activity. Our findings demonstrate that although p110alpha activation is required to sustain the proliferation of established PIK3CA-mutant tumors, PTEN-deficient tumors are dependent instead on p110beta signaling. This unexpected finding demonstrates the need to tailor therapeutic approaches to the genetic basis of PI3K pathway activation to achieve optimal treatment response.
Phosphatidylinositol 3-Kinase, Not Extracellular Signal-regulated Kinase, Regulates Activation of the Antioxidant-Responsive Element in IMR-32 Human Neuroblastoma Cells (2001)

The antioxidant-responsive element (ARE) plays an important role in the induction of phase II detoxifying enzymes including NADPH:quinone oxidoreductase (NQO1). We report herein that activation of the human NQO1-ARE (hNQO1-ARE) by tert-butylhydroquinone (tBHQ) is mediated by phosphatidylinositol 3-kinase (PI3-kinase), not extracellular signal-regulated kinase (Erk1/2), in IMR-32 human neuroblastoma cells. Treatment with tBHQ significantly increased NQO1 protein without activation of Erk1/2. In addition, PD 98059 (a selective mitogen-activated kinase/Erk kinase inhibitor) did not inhibit hNQO1-ARE-luciferase expression or NQO1 protein induction by tBHQ. Pretreatment with LY 294002 (a selective PI3-kinase inhibitor), however, inhibited both hNQO1-ARE-luciferase expression and endogenous NQO1 protein induction. In support of a role for PI3-kinase in ARE activation we show that: 1) transfection of IMR-32 cells with constitutively active PI3-kinase selectively activated the ARE in a dose-dependent manner that was completely inhibited by treatment with LY 294002; 2) pretreatment of cells with the PI3-kinase inhibitors, LY 294002 and wortmannin, significantly decreased NF-E2-related factor 2 (Nrf2) nuclear translocation induced by tBHQ; and 3) ARE activation by constitutively active PI3-kinase was blocked completely by dominant negative Nrf2. Taken together, these data clearly show that ARE activation by tBHQ depends on PI3-kinase, which lies upstream of Nrf2.
Tumor necrosis factor identified in multiple sclerosis brain. (1989)

Frozen brain specimens from patients with multiple sclerosis (MS) and other neurologic diseases were analyzed using immunocytochemical techniques for the presence of TNF. In brain lesions in MS, and subacute sclerosing panencephalitis, TNF+ cells were demonstrated. At the lesion site in MS, TNF+ staining is associated with both astrocytes and macrophages. These observations were not made in Alzheimer's disease or normal brain tissue. The presence of TNF in MS lesions suggests a significant role for cytokines and the immune response in disease progression.
Clostridium oroticum comb. nov. amended description (1968)

The organism formerly designated Zymobacterium oroticum, Wachsman and Barker (1954), has been shown to produce heat resistant spores, and is therefore a member of the genus Clostridium. The characteristics of C. oroticum differ significantly from those of other species of the genus Clostridium that have been described.
OFDM for Wireless Communications Systems (2004)

Written by leading authority Ramjee Prasad, this timely new work offers a complete understanding of OFDM technology and applications in wireless communications systems, placing emphasis on wireless LANs and PANs. OFDM is a key technology for beyond 3G communications, promising robust, high capacity, high speed wireless broadband multimedia networks. In this practical resource, established and new technologies are explained clearly and comprehensively, from OFDM basics to a detailed account of a new technique, hybrid OFDM CDMA slow frequency hopping. The book offers an in-depth treatment of the underlying technologies and applications of PANs and describes and evaluates a practical OFDM system concept. Invaluable for wireless engineers and researchers, this cutting edge new book is a must-have for anyone who needs to understand this critical technology and its implementation in WLANs and WPANs.
Sequence analysis of percent G+C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria (2009)

This study shows that the %G+C profiling and fractioning prior to cloning and sequencing can reveal a significantly larger proportion of high G+C content bacteria within the clones recovered, compared with the unfractioned sample in the human GI tract. Especially the order Coriobacteriales within the phylum Actinobacteria was found to be more abundant than previously estimated with conventional sequencing studies.
Mode of action of a new indolocarbazole anticancer agent, J-107088, targeting topoisomerase I. (1999)

J-107088 [6-N-(1-hydroxymethyl-2-hydroxy)ethylamino-12,13-dihydro-2,10-dihydroxy- 13-(beta-D-glucopyranosyl)-5H-indolo[2,3-a]-pyrrolo[3,4-c]-carb azo le-5,7(6H)-dione] is a new derivative of NB-506, an indolocarbazole antitumor agent. J-107088 induced single-strand DNA cleavage only in the presence of topoisomerase I (top1) more effectively than NB-506 or camptothecin. The preferable sequences of the DNA cleaved by J-107088 were C/T / G as in the case of NB-506. This base-preference of J-107088 in top1-mediated cleavage was different from that of camptothecin, which was T / G/A. top1 poisons stabilize the complex between DNA and top1 (cleavable complex). This cleavable complex is released on addition of a high concentration of monovalent cation or removal of top1 poisons. The complex induced by J-107088 was quite stable; it was scarcely released on the addition of NaCl or dilution of J-107088, contrary to the case with camptothecin and NB-506. J-107088-inducing complexes were also stable in cultured cells, when the compound was added to the culture medium. These unique in vitro activities of J-107088 on top1 that differed from those of camptothecin and NB-506 may be relevant to its more potent in vivo antitumor efficacy in a human tumor xenographted nude mouse model.
[In vivo effect of recombined IL-15/Fc fusion protein on EAU]. (2008)

IL-15/Fc fusion proteins decrease the severity of EAU through inhibiting the proliferation, expansion, differentiation and production of inflammatory cytokines of CD8+ T cells.
Health effects of obstructive sleep apnoea and the effectiveness of continuous positive airways pressure: a systematic review of the research evidence (1997)

The relevance of sleep apnoea to public health has been exaggerated. The effectiveness of continuous positive airways pressure in improving health outcomes has been poorly evaluated. There is enough evidence suggesting benefit in reducing daytime sleepiness in some patients to warrant large randomised placebo controlled trials of continuous positive airways pressure versus an effective weight reduction programme and other interventions.
The Small GTP-Binding Protein Rho Potentiates AP-1 Transcription in T Cells (1998)

The Rho family of small GTP-binding proteins is involved in the regulation of cytoskeletal structure, gene transcription, specific cell fate development, and transformation. We demonstrate in this report that overexpression of an activated form of Rho enhances AP-1 activity in Jurkat T cells in the presence of phorbol myristate acetate (PMA), but activated Rho (V14Rho) has little or no effect on NFAT, Oct-1, and NF-kappaB enhancer element activities under similar conditions. Overexpression of a V14Rho construct incapable of membrane localization (CAAX deleted) abolishes PMA-induced AP-1 transcriptional activation. The effect of Rho on AP-1 is independent of the mitogen-activated protein kinase pathway, as a dominant-negative MEK and a MEK inhibitor (PD98059) did not affect Rho-induced AP-1 activity. V14Rho binds strongly to protein kinase Calpha (PKCalpha) in vivo; however, deletion of the CAAX site on V14Rho severely diminished this association. Evidence for a role for PKCalpha as an effector of Rho was obtained by the observation that coexpression of the N-terminal domain of PKCalpha blocked the effects of activated Rho plus PMA on AP-1 transcriptional activity. These data suggest that Rho potentiates AP-1 transcription during T-cell activation.
A spectral subtraction algorithm for suppression of acoustic noise in speech (2005)

Spectral subtraction has been shown to be an effective approach for reducing ambient acoustic noise in order to improve the intelligibility and quality of digitally compressed speech. This paper presents a set of implementation specifications to improve algorithm performance and minimize algorithm computation and memory requirements. It is shown spectral subtraction can be implemented in terms of a nonstationary, multiplicative, frequency domain filter which changes with the time varying spectral characteristics of the speech. Using this filter a speech activity detector is defined and used to allow the algorithm to adapt automatically to changing ambient noise environments. Also the bandwidth information of this filter is used to further reduce the residual narrowband noise components which remain after spectral subtraction.