gebhart/patrepeval huggingface dataset:
Searching in high-dimensional spaces (2001)

During the last decade, multimedia databases have become increasingly important in many application areas such as medicine, CAD, geography, and molecular biology. An important research issue in the field of multimedia databases is the content-based retrieval of similar multimedia objects such as images, text, and videos. However, in contrast to searching data in a relational database, a content-based retrieval requires the search of similar objects as a basic functionality of the database system. Most of the approaches addressing similarity search use a so-called feature transformation that transforms important properties of the multimedia objects into high-dimensional points (feature vectors). Thus, the similarity search is transformed into a search of points in the feature space that are close to a given query point in the high-dimensional feature space. Query processing in high-dimensional spaces has therefore been a very active research area over the last few years. A number of new index structures and algorithms have been proposed. It has been shown that the new index structures considerably improve the performance in querying large multimedia databases. Based on recent tutorials [Berchtold and Keim 1998], in this survey we provide an overview of the current state of the art in querying multimedia databases, describing the index structures and algorithms for an efficient query processing in high-dimensional spaces. We identify the problems of processing queries in high-dimensional space, and we provide an overview of the proposed approaches to overcome these problems.
Selectivity and sensitivity of self-assembled thioctic acid electrodes (1992)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSelectivity and sensitivity of self-assembled thioctic acid electrodesQuan. Cheng and Anna. Brajter-TothCite this: Anal. Chem. 1992, 64, 17, 1998–2000Publication Date (Print):September 1, 1992Publication History Published online1 May 2002Published inissue 1 September 1992https://pubs.acs.org/doi/10.1021/ac00041a041https://doi.org/10.1021/ac00041a041research-articleACS PublicationsRequest reuse permissionsArticle Views545Altmetric-Citations119LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Synthetically modified guide RNA and donor DNA are a versatile platform for CRISPR-Cas9 engineering (2017)

Chemical modification of the gRNA and donor DNA has great potential for improving the gene editing efficiency of Cas9 and Cpf1, but has not been investigated extensively. In this report, we demonstrate that the gRNAs of Cas9 and Cpf1, and donor DNA can be chemically modified at their terminal positions without losing activity. Moreover, we show that 5' fluorescently labeled donor DNA can be used as a marker to enrich HDR edited cells by a factor of two through cell sorting. In addition, we demonstrate that the gRNA and donor DNA can be directly conjugated together into one molecule, and show that this gRNA-donor DNA conjugate is three times better at transfecting cells and inducing HDR, with cationic polymers, than unconjugated gRNA and donor DNA. The tolerance of the gRNA and donor DNA to chemical modifications has the potential to enable new strategies for genome engineering.
Regions of broad-host-range plasmid RK2 involved in replication and stable maintenance in nine species of gram-negative bacteria (1985)

The replication and maintenance properties of the broad-host-range plasmid RK2 and its derivatives were examined in nine gram-negative bacterial species. Two regions of RK2, the origin of replication (oriV) and a segment that encodes for a replication protein (trfA delta kilD, designated trfA*), are sufficient for replication in all nine species tested. However, stable maintenance of this minimal replicon (less than 0.3% loss per generation under nonselection conditions) is observed only in Escherichia coli, Pseudomonas aeruginosa, Pseudomonas putida, and Azotobacter vinelandii. Maintenance of this minimal replicon is unstable in Rhizobium meliloti, Agrobacterium tumefaciens, Caulobacter crescentus, Acinetobacter calcoaceticus, and Rhodopseudomonas sphaeroides. A maintenance function has been localized to a 3.1-kilobase (kb) region of RK2 encoding three previously described functions: korA (trfB korB1 korD), incP1-(II), and korB. The 3.1-kb maintenance region can increase or decrease the stability of maintenance of RK2 derivatives dependent on the host species and the presence or absence of the RK2 origin of conjugal transfer (oriT). In the case of A. calcoaceticus, stable maintenance requires an RK2 segment that includes the promoter and the kilD (kilB1) functions of the trfA operon in addition to the 3.1-kb maintenance region. The broad-host-range maintenance requirements of plasmid RK2, therefore, are encoded by multiple functions, and the requirement for one or more of these functions varies among gram-negative bacterial species.
Implantable neural electrical stimulator for external control of gastrointestinal motility (2006)

Functional electrical stimulation has been suggested as a possible avenue for treating a variety of gastrointestinal motility-related disorders such as gastroparesis, chronic constipation and morbid obesity. The aims of the present study were to design a radio-frequency controlled multi-channel implantable neural gastrointestinal electrical stimulator and test it in an acute canine model. The stimulation parameters can be reprogrammed after implantation, allowing the execution of parametric studies and the investigation of their efficacy in producing controlled gastrointestinal contractions. Bipolar pulse trains of 50Hz frequency, 8-16V(pp) amplitude, 10-100% duty cycle, 1-120s duration, and 2s to 1h pause between successive stimulation sessions were delivered to the stomachs of nine dogs. The resulting contractions were measured by force transducers and digitally recorded on a personal computer. The acute studies confirmed the effectiveness of electrical stimulation in producing invoked gastric contractile activity under the control of the implantable neurostimulator.
Review of Processes in the United States Prior to World War II (1945)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTReview of Processes in the United States Prior to World War IIE. C. Sherrard and F. W. KressmanCite this: Ind. Eng. Chem. 1945, 37, 1, 5–8Publication Date (Print):January 1, 1945Publication History Published online1 May 2002Published inissue 1 January 1945https://pubs.acs.org/doi/10.1021/ie50421a003https://doi.org/10.1021/ie50421a003research-articleACS PublicationsRequest reuse permissionsArticle Views283Altmetric-Citations52LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access options Get e-Alerts
The use of histoacryl tissue adhesive for the primary closure of scalp wounds. (1988)

A prospective evaluation of Histoacryl tissue adhesive for the repair of simple scalp wounds is described. Fifty wounds were repaired using the adhesive and, on examination 5 days later, 49 wounds were fully healed, the remaining wound having only a small area of dehiscence. The advantage of this method of wound repair is discussed.
Electronic properties of substitutionally doped amorphous Si and Ge (1976)

Abstract It is shown that substitutional doping of an amorphous semiconductor is possible and can provide control of the electronic properties over a wide range. a-Si and Ge specimens have been prepared by the decomposition of silane (or germane) in a radio-frequency (r.f.) glow discharge. Doping is achieved by adding carefully measured amounts of phosphine or diborane, between 5 × 10−6 and 10−2 parts per volume, to obtain n- or p-type specimens. The room temperature conductivity of doped a-Si specimens can be controlled reproducibly over about 10 orders of magnitude, which corresponds to a movement of the Fermi level of 1·2 eV. Ion probe analysis on phosphorus doped specimens indicates that about half the phosphine molecules in the gaseous mixture introduce a phosphorus atom into the Si random network; it is estimated that 30–40% of these will act as substitutional donors. The results also show that the number of incorporated phosphorus atoms saturates at about 3 × 1019 cm−3, roughly equal to the number of states in the band tail. It is suggested that, in general, donor sites lie within the energy range of the electron tail states. The use of doped specimens in field effect measurements has considerably extended the range of the experimentally determined density of state function and new results are presented. It is concluded that the main material requirement for effective doping in an amorphous semiconductor is a very low overall density of gap states; in this respect evaporated or sputtered films are far less suitable than glow discharge specimens.
Synthesis and Incorporation of 2′-O-Methyl-Pseudouridine into Oligonucleotides (1997)

Abstract A short multigram synthesis of 2′-O-methylpseudouridine and its phosphoramidite derivative is described which avoids the use of protecting groups on the nitrogens. A binding study of oligonucleotides containing this modification suggest an increased binding affinity to RNA when compared to oligonucleotides incorporating 2′-O-methyluridine.
Cytokine- and chemokine-based gene therapy for cancer. (2003)

Cytokines are protein/glycoprotein messengers of the immune system and have distinct autocrine and paracrine functions to modulate immunity. Recombinant cytokine proteins have been employed as biological drugs for cancer, viral and autoimmune targets. Unfortunately, systemic delivery of pharmacological doses of proteins often results in severe side effects and toxicities. As these therapeutic proteins tend to have very short half-lives and are complex to manufacture and deliver, many investigators are evaluating the genetic delivery of cytokine genes. Here, some of the promising cytokines currently under investigation for cancer therapies are examined, including interleukin (IL)-2, IL-4, IL-12, IL-24, interferon (IFN)-alpha, IFN beta, IFN gamma, granulocyte-monocyte colony-stimulating factor and tumor necrosis factor (TNF)-alpha. Chemokines are smaller chemotactic cytokines which induce migration of leukocytes, activate inflammatory responses, and are implicated in the regulation of tumor development and growth. Chemokines can modulate tumor growth via regulation of tumor-associated angiogenesis, by activation of host immunological responses or by direct inhibition of tumor cell proliferation. In this review, chemokines that have been proposed as antitumor drugs will be discussed, including Glu-Leu-Arg (ELR)-negative chemokines such as IP-10, MCP-3, MIG and SDF-1 alpha from the human CXC and C-C chemokine families.
Science, medicine, and the future: Islet and stem cell transplantation for treating diabetes (2001)

By 2010 the number of people with diabetes is expected to exceed 350 million. Late diabetic complications will cause considerable morbidity in 5-10% of these patients and place an enormous burden on society. Transplantation of insulin producing islet cells isolated in vitro from a donor pancreas could be a cure for type 1 and some cases of type 2 diabetes. Currently, however, lack of sufficient donor organs and the side effects of immunosuppressive therapy limit its potential. Ways to overcome these problems include deriving islet cells from other sources such as pigs, human pancreatic duct cells, fetal pancreatic stem cells, embryonic stem cells, and by therapeutic cloning. This article outlines these developments and discusses how islet cell transplantation is likely to become the treatment of choice for most insulin dependent diabetics within the next five to 10 years.

Our article is based on information from the following core references: the international islet transplant registry; recently published articles describing improvements in islet cell transplantation, reporting treatment of diabetes in animal models with islet cells grown in vitro, and describing novel molecular mechanisms in pancreatic endocrine development (including our own recent work); papers in embryonic and adult stem cell research that have had a major influence on our thinking; and the seminal work from the Roslin Institute and other groups on nuclear transfer.

In many cases current diabetes drug therapies do not provide sufficiently tight control of blood glucose to avoid diabetic late complications. 1 2 Transplantation of whole donor pancreas is an effective form of treatment but is of limited application since it entails major surgery and long term immunosuppression. This failure to prevent the morbidity associated with diabetes places an enormous burden not only on patients and their relatives but also on society. The costs of treating late diabetic complications …
Catalytic Intermolecular Amination of C−H Bonds: Method Development and Mechanistic Insights (2007)

Reaction methodology for intermolecular C-H amination of benzylic and 3 degrees C-H bonds is described. This process uses the starting alkane as the limiting reagent, gives optically pure tetrasubstituted amines through stereospecific insertion into enantiomeric 3 degrees centers, displays high chemoselectivity for benzylic oxidation, and enables the facile preparation of isotopically enriched 15N-labeled compounds. Access to substituted amines, amino alcohols, and diamines is thereby made possible in a single transformation. Important information relevant to understanding the initial steps in the catalytic cycle, reaction chemoselectivity, the nature of the active oxidant, and pathways for catalyst inactivation has been gained through mechanistic analysis; these studies are also presented.
Gene activity during the early phase of androgen-stimulated rat prostate regrowth. (1989)

Androgenic steroids regulate the proliferation rate of normal and malignant prostate cells. In order to investigate the molecular basis of this control, we utilized Northern and Western blot techniques to measure changes in the expression of individual genes during the early phase of prostate regrowth. Vestigial ventral prostate glands of 7-day castrated rats showed increased numbers of replicating cells within 12 h of continuous pharmacological testosterone replacement as demonstrated by flow cytometric procedures. The period prior to the onset of proliferative enhancement was accompanied by the sequential induction of a variety of transcripts encoding gene products often associated with cell growth. Within 1 h of treatment, mature mRNA transcripts for c-fos were induced 6-fold, returning to control levels by 2 h. Other genes showed transiently elevated transcript levels after 2 h (c-Ha-ras, c-Ki-ras) or after 8 h (c-myc,c-myb, beta-actin, and Mr 70,000 heat shock protein) of testosterone replacement. Expression of the polypeptide encoded by c-Ha-ras was coordinately enhanced (2-fold) during this period, but not to the levels of the transcript (20-fold induction). Transcripts encoding basic fibroblast growth factor were increased 16 h and later, subsequent to the earlier enhancement in the proliferation rate. By placing these genes in a defined temporal order with regard to their expression in response to testosterone, we have constructed a map of gene activity during early prostate regrowth. This map shows a number of genes, the products of which might participate in the mechanism by which androgens induce mitogenesis of prostate cells.
Tunneling and thermal emission of electrons from a distribution of deep traps in SiO/sub 2/ (nMOSFET) (1993)

Both field-induced, or tunneling, and thermal emission of electrons from deep traps in the gate oxides on n-channel LDD CMOS devices have been observed and characterized. Experimental results show that the deep trapping effects at room temperature are similar to the shallow-level trapping effects observed by others below room temperature. In this case, however, the time constants involved are very long. This model and physical mechanisms can explain the apparent saturation observed under AC stress conditions, and also the differences observed between AC use conditions and DC stress.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Identification and characterization of a fibroblast marker: FSP1. (1995)

We performed subtractive and differential hybridization for transcript comparison between murine fibroblasts and isogenic epithelium, and observed only a few novel intracellular genes which were relatively specific for fibroblasts. One such gene encodes a filament-associated, calcium-binding protein, fibroblast-specific protein 1 (FSP1). The promoter/enhancer region driving this gene is active in fibroblasts but not in epithelium, mesangial cells or embryonic endoderm. During development, FSP1 is first detected by in situ hybridization after day 8.5 as a postgastrulation event, and is associated with cells of mesenchymal origin or of fibroblastic phenotype. Polyclonal antiserum raised to recombinant FSP1 protein stained the cytoplasm of fibroblasts, but not epithelium. Only occasional cells stain with specific anti-FSP1 antibodies in normal parenchymal tissue. However, in kidneys fibrosing from persistent inflammation, many fibroblasts could be identified in interstitial sites of collagen deposition and also in tubular epithelium adjacent to the inflammatory process. This pattern of anti-FSP1 staining during tissue fibrosis suggests, as a hypothesis, that fibroblasts in some cases arise, as needed, from the local conversion of epithelium. Consistent with this notion that FSP1 may be involved in the transition from epithelium to fibroblasts are experiments in which the in vitro overexpression of FSP1 cDNA in tubular epithelium is accompanied by conversion to a mesenchymal phenotype, as characterized by a more stellate and elongated fibroblast-like appearance, a reduction in cytokeratin, and new expression of vimentin. Similarly, tubular epithelium submerged in type I collagen gels exhibited the conversion to a fibroblast phenotype which includes de novo expression of FSP1 and vimentin. Use of the FSP1 marker, therefore, should further facilitate both the in vivo studies of fibrogenesis and the mapping of cell fate among fibroblasts.
Pituitary Control of Ovarian Function — Concepts Derived from Gonadotrophin Therapy (1978)

From experience gained in the monitoring of ovarian responses to gonadotropin therapy, it has been possible to develop concepts concerning the mechanisms which operate during the normal menstrual cycle. It is shown that the ovarian requirement for FSH operates in a very narrow range, involving changes in concentration of only 10%; this range operates from a threshold level, through an intermediate level to a maximum level. After adequate stimulation, the follicle goes through a costing phase during which it is independent of further FSH stimulation and it acquires sensitivity to LH. Methods for determining optimum requirements for FSH and HCG for the induction of singleton pregnancies are presented. The relevance of the findings in providing hypotheses explaining some aspects of ovulatory and anovulatory cycles are discussed.
Poly(ethylene glycol)-Based Multidentate Oligomers for Biocompatible Semiconductor and Gold Nanocrystals (2011)

We have developed a new set of multifunctional multidentate OligoPEG ligands, each containing a central oligomer on which were laterally grafted several short poly(ethylene glycol) (PEG) moieties appended with either thioctic acid (TA) or terminally reactive groups. Reduction of the TAs (e.g., in the presence of NaBH(4)) provides dihydrolipoic acid (DHLA)-appended oligomers. Here the insertion of PEG segments in the ligand structure promotes water solubility and reduces nonspecific interactions, while TA and DHLA groups provide multidentate anchoring onto Au nanoparticles (AuNPs) and ZnS-overcoated semiconductor quantum dots (QDs), respectively. The synthetic route involves simple coupling chemistry using N,N-dicylohexylcarbodiimide (DCC). Water-soluble QDs and AuNPs capped with these ligands were prepared via cap exchange. As prepared, the nanocrystals dispersions were aggregation-free, homogeneous, and stable for extended periods of time over pH ranging from 2 to 14 and in the presence of excess electrolyte (2 M NaCl). The new OligoPEG ligands also allow easy integration of tunable functional and reactive groups within their structures (e.g., azide or amine), which imparts surface functionalities to the nanocrystals and opens up the possibility of bioconjugation with specific biological molecules. The improved colloidal stability combined with reactivity offer the possibility of using the nanocrystals as biological probes in an array of complex and biologically relevant media.