gebhart/patrepeval huggingface dataset:
Human immune response to sand fly salivary gland antigens: a useful epidemiological marker? (2000)

Antibody (IgG) responses to salivary gland homogenate and to a recombinant salivary protein from the sand fly Lutzomyia longipalpis were investigated using sera from children living in an endemic area of visceral leishmaniasis in Brazil. We classified children into four groups according to their responses to Leishmania antigen: (Group I) positive serology and positive delayed type hypersensitivity (DTH), (Group II) positive serology and negative DTH, (Group III) negative serology and positive DTH, and (Group IV) negative serology and negative DTH. A highly significant correlation was found between anti-salivary gland IgG levels and DTH responses. An L. longipalpis salivary recombinant protein used as an antigen in an enzyme-linked immuno sorbent assay (ELISA) gave a significant but different result. A positive correlation was found between anti-Leishmania IgG and anti-recombinant protein IgG titers. The results indicate that sand fly salivary proteins may be of relevance to the study the epidemiology of leishmaniasis.
Nucleotidophospholipids: oligonucleotide derivatives with membrane-recognition groups (1982)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTNucleotidophospholipids: oligonucleotide derivatives with membrane-recognition groupsFausto Ramirez, Sukhendu B. Mandal, and James F. MarecekCite this: J. Am. Chem. Soc. 1982, 104, 20, 5483–5486Publication Date (Print):October 1, 1982Publication History Published online1 May 2002Published inissue 1 October 1982https://pubs.acs.org/doi/10.1021/ja00384a039https://doi.org/10.1021/ja00384a039research-articleACS PublicationsRequest reuse permissionsArticle Views120Altmetric-Citations20LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Bacterial cellulases and xylanases (1993)

Microbiology Society journals contain high-quality research papers and topical review articles. We are a not-for-profit publisher and we support and invest in the microbiology community, to the benefit of everyone. This supports our principal goal to develop, expand and strengthen the networks available to our members so that they can generate new knowledge about microbes and ensure that it is shared with other communities.
Minimizing Rectal and Urinary Complications in Prostate Brachytherapy (2000)

With any therapy for early prostate cancer, control must be evaluated with a view to toxicities. Brachytherapy may be associated with urethral and rectal toxicity and erectile impotence. Patients with large glands or significant symptoms before treatment are at greatest risk. Long-term toxicity can be minimized by understanding the tolerance of the normal tissues and meticulous placement of the radioactive seeds.
The Generation and Characterization of Antagonist RNA Aptamers to Human Oncostatin M (2000)

Oncostatin M (OSM) is a multifunctional member of the interleukin-6 cytokine family. OSM has been implicated as a powerful proinflammatory mediator and may represent a potentially important, novel therapeutic opportunity for treatment of established rheumatoid arthritis. To further investigate the role of OSM in inflammatory disorders, we have isolated a series of RNA aptamers that bind specifically to human OSM. The highest affinity aptamer, designated ADR58, has been characterized in a series of in vitro and cell based assays. ADR58 has an affinity of 7 nM for human OSM, and it can antagonize OSM binding to the gp130 receptor and specifically antagonize OSM mediated signaling. The aptamer has been truncated in length to 33 bases, all pyrimidine positions are substituted with 2 fluorine, and 14 of 18 purine positions have been substituted with 2 O-methyl to increase stability toward nucleases. This truncated, modified form of ADR58 retains complete affinity and functional activity for OSM. This aptamer may be used as a tool to further investigate the role of OSM in inflammatory disorders and may also have role as a therapeutic agent.
Image hallucination with primal sketch priors (2003)

We propose a Bayesian approach to image hallucination. Given a generic low resolution image, we hallucinate a high resolution image using a set of training images. Our work is inspired by recent progress on natural image statistics that the priors of image primitives can be well represented by examples. Specifically, primal sketch priors (e.g., edges, ridges and corners) are constructed and used to enhance the quality of the hallucinated high resolution image. Moreover, a contour smoothness constraint enforces consistency of primitives in the hallucinated image by a Markov-chain based inference algorithm. A reconstruction constraint is also applied to further improve the quality of the hallucinated image. Experiments demonstrate that our approach can hallucinate high quality super-resolution images.
Hypoxia and vascular endothelial growth factor stimulate angiogenic integrin expression in bovine retinal microvascular endothelial cells. (1998)

These data suggest that hypoxia stimulates expression of vascular integrins alphavbeta3 and alphavbeta5 in retinal microvascular endothelial cells partially through autocrine-paracrine action of VEGF induced by the hypoxic state.
Rapid determination of trisomy 21 from amniotic fluid cells using single-nucleotide polymorphic loci (2005)

Combined and selected SNP markers could be valuable tools for rapid trisomy 21 detection in prenatal genetic screening.
An albumin enhancer located 10 kb upstream functions along with its promoter to direct efficient, liver-specific expression in transgenic mice. (1987)

Transgenic mice were used to locate the cis-acting DNA elements that are important for efficient, tissue-specific expression of the mouse albumin gene in the adult. Chimeric genes with up to 12 kb of mouse albumin 5'-flanking region fused to a human growth hormone (hGH) reporter gene were tested. Remarkably, a region located 8.5-10.4 kb upstream of the albumin promoter was essential for high-level expression in adult liver and the region in between -8.5 and -0.3 kb was dispensable. The far-upstream region behaved like an enhancer in that its position and orientation relative to the albumin promoter were not critical; however, it did not function well with a heterologous promoter. Two of four DNase hypersensitive sites found in the 5'-flanking region of the albumin gene map to the far-upstream and promoter regions; the others may reflect regions involved in developmental or environmental control of this gene.
Effect of Nitrogen on the Stability of Silicon Nanocrystals Produced by Decomposition of Alkyl Silanes (2008)

Si nanocrystals 1−10 nm in size highly resistant to oxidation were prepared by thermal (680 °C) or gold-induced (450−600 °C) decomposition of tetramethylsilane and tetraethylsilane using trioctylamine as an initial solvent. Transmission electron microscopy analysis of samples obtained in the presence of gold showed that Si nanocrystals form via solid-phase epitaxial attachment of Si to the gold crystal lattice. The results of computational modeling performed using first principles density functional theory calculations show that the enhanced stability of nanocrystals to oxidation is due to the presence of N or N-containing groups on the surface of nanocrystals.
Up-regulation of MDC15 (metargidin) messenger RNA in human osteoarthritic cartilage (1999)

Our results demonstrate a markedly strong up-regulation of MDC15 in adult OA and neoplastic cartilage compared with adult normal articular cartilage, indicating a potential role of the disintegrin metalloproteinase in cartilage remodeling.
A COMPARISON OF WATER JET, ABRASIVE JET AND ROTARY DIAMOND DRILLING IN HARD ROCK (1999)

Construction activities which require the placement of utilities in hard rock would benefit from a lightweight system which is capable of accurately drilling a short constant radius arc as illustrated in Figure 1. Existing mechanical drilling systems are capable of drilling shallow directional holes but the equipment is heavy, drilling rates are low and costs are high. A comparison of approaches for rapidly drilling a small-diameter (25-50-mm), near-surface, hole through a short-radius (30-m) arc in a variety of hard rock types is provided here. Four approaches were considered:
Flexibility and quality in the access network (2003)

It is argued that, to keep pace with ever-changing needs for new services capabilities and increased bandwidth, local exchange carriers (LECs) need to deploy a flexible and robust access infrastructure. The use of outside plant electronics such as digital loop carrier (DLC) and lightwave multiplexers, either stand-alone or integrated, to implement remote service interfaces and a high-bandwidth fiber feeder can achieve this goal. To insure flexibility, the DLC and lightwave multiplexer equipment should support full service capability and bandwidth management of the DS0 and DS1/VT1.5 (Virtual Tributary 1.5) level. On the distribution side, the platform should support copper, fiber, and wireless access. On the feeder side, use of standard interfaces such as TR303 and SONET are crucial in implementing a high-functionality network that supports advanced operations, administration, maintenance, and provisioning, as well as multivendor interworking.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
General Method for the Dimension Reduction of Adaptive Control Experiments (2006)

Adaptive femtosecond control experiments are expanding the possibilities for using laser pulses as photophysical and photochemical reagents. However, because of the large number of variables necessary to perform these experiments (usually 100-200), it has proven difficult to elucidate the underlying control mechanisms from the optimized pulse shapes. If adaptive control is to become a widespread tool for examining chemical dynamics, methods must be developed that reveal latent control mechanisms. This manuscript presents a generally applicable method for dimension reduction of adaptive control experiments based on partial least squares regression analysis (PLS) of the normalized covariance matrix of the total data set. When applied to experimental results obtained in our laboratory, it shows that only seven fundamental dimensions from an original 208-dimension search space are needed to account for approximately 90% of the variance in the observed fitness of 11,700 laser-pulse shapes explored during the optimization experiment. Furthermore, the seven dimensions have a remarkable regularity in their functional form. It is anticipated that this work will facilitate theoretical treatments directly linking the optimal fields to control mechanisms, allow quantitative comparisons of independent control results, and suggest new experimental methods for rapid adaptive searches.
Immunoglobulin treatment reduces atherosclerosis in apo E knockout mice. (1998)

Atherosclerosis is associated with immune activation. T cells and macrophages infiltrate atherosclerotic plaques and disease progression is associated with formation of autoantibodies to oxidized lipoproteins. In the apo E knockout mouse, a genetic model of cholesterol-induced atherosclerosis, congenital deficiency of macrophages, lymphocytes, or interferon-gamma receptors result in reduced lesion formation. We have now evaluated whether immune modulation in the adult animal affects disease development. Injections of 7-wk-old male apo E knockout mice with polyclonal immunoglobulin preparations (ivIg) during a 5-d period reduced fatty streak formation over a 2-mo period on cholesterol diet by 35%. Fibrofatty lesions induced by diet treatment for 4 mo were reduced by 50% in mice receiving ivIg after 2 mo on the diet. ivIg treatment also reduced IgM antibodies to oxidized LDL and led to inactivation of spleen and lymph node T cells. These data indicate that ivIg inhibits atherosclerosis, that it is effective both during the fatty streak and plaque phases, and that it may act by modulating T cell activity and/or antibody production. Therefore, immunomodulation may be an effective way to prevent and/or treat atherosclerosis.
Upper Extremity Limb Function Discrimination Using EMG Signal Analysis (1983)

A signal analysis technique is developed for discriminating a set of lower arm and wrist functions using surface EMG signals. Data wete obtained from four electrodes placed around the proximal forearm. The functions analyzed included wrist flexion/extension, wrist abduction/adduction, and forearm pronation/supination. Multivariate autoregression models were derived for each function; discrimination was performed using a multiple-model hypothesis detection technique. This approach extends the work of Graupe and Cline [1] by including spatial correlations and by using a more generalized detection philosophy, based on analysis of the time history of all limb function probabilities. These probabilities are the sufficient statistics for the problem if the EMG data are stationary Gauss-Markov processes. Experimental results on-normal subjects are presented which demonstrate the advantages of using the spatial and time correlation of the signals. This technique should be useful in generating control signals for prosthetic devices.
Excessive daytime sleepiness in Parkinson disease (2006)

Excessive daytime sleepiness is a frequent and highly persistent feature in Parkinson disease, with multifactorial underlying pathophysiology. The authors' findings indicate that both age and disease related disturbances of the sleep-wake regulation contribute to hypersomnia in PD. Treatment with dopamine agonists also contributed to excessive daytime sleepiness in our patients.
Distributed authentication in Kerberos using public key cryptography (2002)

The authors describe a method for fully distributed authentication using public key cryptography within the Kerberos ticket framework. By distributing most of the authentication workload away from the trusted intermediary and to the communicating parties, significant enhancements to security and scalability can be achieved as compared to Kerberos V5. Privacy of Kerberos clients is also enhanced. A working implementation of this extended protocol has been developed, and a migration plan is proposed for a transition from traditional to public key based Kerberos.
Vascular endothelial growth factor-C expression and its relationship to pelvic lymph node status in invasive cervical cancer (2001)

Vascular endothelial growth factor-C (VEGF-C) has been implicated in lymphangiogenesis, the process of new lymphatics formation. The present study investigated VEGF-C mRNA expression in invasive cervical cancer tissue. Additionally, the association of VEGF-C mRNA with clinicopathological features was examined. VEGF-C mRNA expression was assessed by reverse transcription-polymerase chain reaction using beta-action as an internal control. 75 patients presenting with invasive cervical cancer were included in the trial. VEGF-C mRNA expression was markedly higher in tumours in which pelvic lymph node metastasis was diagnosed by magnetic resonance (MR) imaging (P = 0.002). 53 patients displaying stage Ib-IIb cervical cancer underwent radical hysterectomy and pelvic lymphadenectomy. VEGF-C expression was significantly higher in tumours exhibiting deep stromal invasion, pelvic lymph node metastasis and lymph-vascular space involvement (P = 0.016, P = 0.006 and P = 0.036, respectively). Multivariate analysis revealed VEGF-C mRNA expression to be the sole independent factor influencing pelvic lymph node metastasis. Subjects demonstrating VEGF-C mRNA expression displayed significantly poorer prognoses than those lacking VEGF-C mRNA expression (P = 0.049). These findings provide evidence supporting the involvement of VEGF-C expression in the promotion of lymph node metastasis in cervical cancer. Furthermore, examination of VEGF-C expression in biopsy specimens may be beneficial in the prediction of pelvic lymph node metastasis.
Quantum Error Correction by Coding (1995)

Recent progress in quantum cryptography and quantum computers has given hope to their imminent practical realization. An essential element at the heart of the application of these quantum systems is a quantum error correction scheme. We propose a new technique based on the use of coding in order to detect and correct errors due to imperfect transmission lines in quantum cryptography or memories in quantum computers. We give a particular example of how to detect a decohered qubit in order to transmit or preserve with high fidelity the original qubit.
RAPID EXTRACTION OF GRASS POLLEN ALLERGENS AND SEPARATION OF THEIR ACTIVE FRACTIONS (1976)

The immediate effects of nasal provocation tests with dry grass pollen, correlated with recent botanical evidence of almost instant release of allergens from the pollen wall, suggested that prolonged extraction of pollens was unnecessary and perhaps undesirable. It has now been shown that all the active allergens from undefatted dry grass pollens of the 12 major British species are extracted completely in 15 min. Gel chromatography of such rapid extracts has shown clear-cut separation of active from inactive material, as confirmed by skin and nasal provocation testing. It is probable that active fractions thus obtained contain the only pollen allergens of importance to clinical allergy. Further purification may produce specific allergens useful for the accurate standardisation of vaccines.
[Effects of curcumin on malondialdehyde and c-fos protein in hypoxia ischemia brain tissue in rats]. (2009)

Curcumin could significantly decrease the content of MDA, increase the expression level of c-fos protein and reduce the damage of the neuron cells.
Cytotoxicity Acquired by Conjugation of an Anti‐Thy1.1 Monoclonal Antibody and the Ribosome‐Inactivating Protein, Gelonin (1981)

Gelonin, a plant protein which can powerfully reduce the protein-synthetic capacity of ribosome preparations, was covalently coupled to anti-Thy1.2 antibody. The conjugate was prepared using N-succinimidyl-3-(2-pyridyldithio)propionate which generates a disulphide linkage between the component molecules. Two conjugate fractions were obtained with Mr of 180 000 and greater than 200 000. After its linkage of the antibody, gelonin suppressed those Thy1.1-bearing T lymphocytes from AKR mice which will respond to phytohaemagglutinin and concanavalin A in tissue culture. The [3H]leucine incorporation with the T-cell mitogens was inhibited by 50% with the 180 000-Mr fraction at a concentration of 0.4 nM and with the greater than 200 000-Mr fraction of pM. Unconjugated gelonin induced comparable reductions in T-cell responsiveness but at concentrations of 30 nM. The conjugates exerted little or no effect upon B lymphocytes or T lymphocytes from CBA mice (Thy1.2 + ve). Thy1.1-expressing AKR lymphoma cell lines, AKR-A and BW5147, were found to be sensitive to the conjugates, albeit much less so than the normal T lymphocytes. The conjugates injected in vivo significantly prolonged the life of CBA mice bearing in an AKR-A lymphoma allograft. It is concluded that gelonin can, by its linkage to an antibody, be rendered cytotoxic with a potency to match or exceed those of the toxins abrin and ricin.
Microwell hybridization assay for detection of PCR products from Mycobacterium tuberculosis complex and the recombinant Mycobacterium smegmatis strain 1008 used as an internal control (1996)

A microwell hybridization assay was developed for the detection of the PCR products from both Mycobacterium tuberculosis complex bacteria and the recombinant Mycobacterium smegmatis strain 1008 that is used as an internal control to monitor inhibition in the PCR based on the M. tuberculosis complex-specific insertion sequence IS6110. The test is based on specific detection with digoxigenin-labeled oligonucleotide probes of biotinylated PCR products which are captured in a microtiter plate coated with streptavidin. The captured PCR products are hybridized separately with two probes, one specific for the PCR product from IS6110 from M. tuberculosis complex and the other specific for the PCR fragment from the modified IS6110 fragment from the recombinant M. smegmatis 1008. The microwell hybridization assay discriminates perfectly between the two types of amplicon. The amount of PCR product that can be detected by this assay is 10 times less than that which can be detected by agarose gel electrophoresis. The test can be performed in 2 h. It is much faster and less laborious than Southern blot hybridization. Furthermore, the interpretation of results is objective. The assay was used with 172 clinical samples in a routine microbiology laboratory, and the results were in complete agreement with those of agarose gel electrophoresis and Southern blot hybridization.
Nabokov's Genocidal and Nuclear Holocausts in 'Lolita.' (Vladimir Nabokov) (1996)

Two new methanogenic bacteria, Methanocorpusculum sinense spec. nov. strain DSM 4274 from a pilot plant for treatment of distillery wastewater in Chengdu (Province Sichuan, China), and Methanocorpusculum bavaricum spec. nov. strain DSM 4179, from a wastewater pond of the sugar factory in Regensburg (Bavaria, FRG) are described. Methanocorpusculum strains are weakly motile and form irregularly coccoid cells, about 1 micron in diameter. The cell envelope consists of a cytoplasmic membrane and a S-layer, composed of hexagonally arranged glycoprotein subunits with molecular weights of 90,000 (Methanocorpusculum parvum), 92,000 (M. sinense), and 94,000 (M. bavaricum). The center-to-center spacings are 14.3 nm, 15.8 nm and 16.0 nm, respectively. Optimal growth of strains is obtained in the mesophilic temperature range and at a pH around 7. Methane is produced from H2/CO2, formate, 2-propanol/CO2 and 2-butanol/CO2 by M. parvum and M. bavaricum, whereas M. sinense can only utilize H2/CO2 and formate. Growth of M. sinense and M. bavaricum is dependent on the presence of clarified rumen fluid. The G + C content of the DNA of the three strains is ranging from 47.7-53.6 mol% as determined by different methods. A similar, but distinct polar lipid pattern indicates a close relationship between the three Methanocorpusculum species. The polyamine patterns of M. parvum, M. sinense and M. bavaricum are similar, but distinct from those of other methanogens and are characterized by a high concentration of the otherwise rare 1,3-diaminopropane. Quantitative comparison of the antigenic fingerprint of members of Methanocorpusculum revealed no antigenic relationship with any one of the reference methanogens tested. On the basis of the distant phylogenetic position of M. parvum and the data presented in this paper a new family, the Methanocorpusculaceae fam. nov., is defined.
Bogorol A Produced in Culture by a Marine Bacillus sp. Reveals a Novel Template for Cationic Peptide Antibiotics (2001)

[figure: see text] Bogorol A (1), a novel peptide antibiotic active against MRSA and VRE, has been isolated from cultures of a marine Bacillus sp. collected in Papua New Guinea. The structure of bogorol A was elucidated by a combination of spectroscopic analyses and chemical degradation. Bogorol A illustrates a new structural template for "cationic peptide antibiotics".