gebhart/patrepeval huggingface dataset:
Interactions Between Germ Cells and Sertoli Cells in the Testis (1995)

The "nurse cell" function of Sertoli cells in spermatogenesis was originally tacitly assumed on the basis of the anatomical relationships between cells in the testis. In mammals, from very early in prenatal development to the onset of meiosis and to the ultimate production of spermatozoa, the relationship between the germinal cells and the Sertoli cells is important and apparently obligatory. The experimental evidence supports the notion that the primary endocrine regulation of spermatogenesis via FSH and testosterone is manifested through actions on the Sertoli cells. Although diverse strategies are used by Sertoli cells to support germ cell development, one of the most important roles of Sertoli cells is the regulation of the intratubular and intercellular environment adluminal to the tight junctional complexes. The meiotic and post-meiotic germ cells are sequestered by Sertoli-Sertoli junctional complexes in an adluminal compartment that is isolated from the serum or lymph. As a result of this sequestering activity, the secretion products of the Sertoli cells and the meiotic germ cells determine the composition of this local environment that can influence meiosis as well as spermatid and spermatocyte development. Evidence is accumulating that paracrine and autocrine factors from Sertoli and germ cells are important in the functioning of both cell types. While it is important to know what Sertoli cells and germ cells make, it is equally important to know when they make it. Distinct but well-defined groups of germ cells interact with Sertoli cells in a cyclic pattern. These recurring groups of germ cells define the cycle of the seminiferous epithelium during which sperm are produced in an asynchronous fashion.(ABSTRACT TRUNCATED AT 250 WORDS)
In Vivo Visualization of Embryonic Stem Cell Survival, Proliferation, and Migration After Cardiac Delivery (2006)

This is the first study to characterize ES cells that stably express fluorescence, bioluminescence, and positron emission tomography reporter genes and monitor the kinetics of ES cell survival, proliferation, and migration. This versatile imaging platform should have broad applications for basic research and clinical studies on stem cell therapy.
Growth hormone (GH) induction of tyrosine phosphorylation and activation of mitogen-activated protein kinases in cells transfected with rat GH receptor cDNA (1992)

The mechanism of growth hormone (GH) action was studied in Chinese hamster ovary (CHO) cells transfected with GH receptor cDNA. Cytosolic extracts from GH- or phorbol ester (12-O-tetradecanoyl 4 beta-phorbol 13-acetate)-treated cells, transfected with full-length GH receptor cDNA, had an enhanced ability to phosphorylate myelin basic protein. Myelin basic protein, a substrate for mitogen-activated protein (MAP) kinase, was maximally phosphorylated using extracts from cells treated with 50 nM bovine GH for 10 min. In addition, GH treatment resulted in an increased cell proliferation by 30-60%. GH and 12-O-tetradecanoyl 4 beta-phorbol 13-acetate cause tyrosine phosphorylation of two proteins with M(r) of 40,000 and 42,000 that are also recognized by MAP kinase antibodies. These proteins were identified as MAP kinases by analyzing phosphotyrosine immunoprecipitates on Western blots using MAP kinase antibodies. In addition, GH induces mitogenicity, as well as MAP kinase activation, in CHO cells expressing a receptor in which 184 amino acids had been deleted in the carboxyl-terminal part of the intracellular domain. No GH effects were seen in untransfected cells, in CHO cells expressing a truncated GH receptor containing only 5 of 349 amino acids in the intracellular domain, or in cells expressing the soluble GH-binding protein. In conclusion, our data show that GH treatment of CHO cells, reconstituted with GH receptors, initiates a phosphorylation cascade which includes MAP kinase.
Design and evaluation of an ultra-slim objective for in-vivo deep optical biopsy (2010)

An estimated 1.6 million breast biopsies are performed in the US each year. In order to provide real-time, in-vivo imaging with sub-cellular resolution for optical biopsies, we have designed an ultra-slim objective to fit inside the 1-mm-diameter hypodermic needles currently used for breast biopsies to image tissue stained by the fluorescent probe proflavine. To ensure high-quality imaging performance, experimental tests were performed to characterize fiber bundle's light-coupling efficiency and simulations were performed to evaluate the impact of candidate lens materials' autofluorescence. A prototype of NA = 0.4, 250-microm field of view, ultra-slim objective optics was built and tested, yielding diffraction-limited performance and estimated resolution of 0.9 microm. When used in conjunction with a commercial coherent fiber bundle to relay the image formed by the objective, the measured resolution was 2.5 microm.
Identification of a New Membrane-associated Protein That Influences Transport/Maturation of Gingipains and Adhesins of Porphyromonas gingivalis (2005)

The dual membrane envelopes of Gram-negative bacteria provide two barriers of unlike nature that regulate the transport of molecules into and out of organisms. Organisms have developed several systems for transport across the inner and outer membranes. The Gram-negative periodontopathogenic bacterium Porphyromonas gingivalis produces proteinase and adhesin complexes, gingipains/adhesins, on the cell surface and in the extracellular milieu as one of the major virulence factors. Gingipains and/or adhesins are encoded by kgp, rgpA, rgpB, and hagA on the chromosome. In this study, we isolated a P. gingivalis mutant (porT), which showed very weak activities of gingipains in the cell lysates and culture supernatants. Subcellular fractionation and immunoblot analysis demonstrated that precursor forms of gingipains and adhesins were accumulated in the periplasmic space of the porT mutant cells. Peptide mass fingerprinting and N-terminal amino acid sequencing of the precursor proteins and the kgp'-'rgpB chimera gene product in the porT mutant indicated that these proteins lacked the signal peptide regions, consistent with their accumulation in the periplasm. The PorT protein seemed to be membrane-associated and exposed to the periplasmic space, as revealed by subcellular fractionation and immunoblot analysis using anti-PorT antiserum. These results suggest that the membrane-associated protein PorT is essential for transport of the kgp, rgpA, rgpB, and hagA gene products across the outer membrane from the periplasm to the cell surface, where they are processed and matured.
Audio-Video Person Authentication Based on 3D Facial Feature Warping (2005)

In this paper we propose a novel feature warping technique based on thin-plate-spline (TPS) analysis for 3D audio-video person authentication systems. The TPS warp features model information related to non-rigid variations on speaking faces, such as expression lines, gestures, and wrinkles, enhancing the performance of the system against impostor and spoof attacks. Experiments with multimodal fusion of acoustic and TPS shape features for two different speaking face data corpus, VidTIMIT and AVOZES, allowed equal error rates (EERs) of less than 0.5 % for imposter attacks, less than 1 % for type-1 replay attacks (still photo and pre-recorded audio) and less than 2% for more complex type-2 replay attacks (pre-recorded video or fake CG animated video).
Inhibitors of TLR-9 Act on Multiple Cell Subsets in Mouse and Man In Vitro and Prevent Death In Vivo from Systemic Inflammation (2005)

In parallel with the discovery of the immunostimulatory activities of CpG-containing oligodeoxynucleotides, several groups have reported specific DNA sequences that could inhibit activation by CpG-containing oligodeoxynucleotides in mouse models. We show that these inhibitory sequences, termed IRS, inhibit TLR-9-mediated activation in human as well as mouse cells. This inhibitory activity includes proliferation and IL-6 production by B cells, and IFN-alpha and IL-12 production by plasmacytoid dendritic cells. Our studies of multiple cell types in both mice and humans show the optimal IRS to contain a GGGG motif within the sequence, and the activity to require a phosphorothioate backbone. Although the GGGG motif readily itself leads to formation of a tetrameric oligodeoxynucleotide structure, inhibitory activity resides exclusively in the single-stranded form. When coinjected with a CpG oligodeoxynucleotide in vivo, IRS were shown to inhibit inflammation through a reduction in serum cytokine responses. IRS do not need to be injected at the same site to inhibit, demonstrating that rapid, systemic inhibition of TLR-9 can be readily achieved. IRS can also inhibit a complex pathological response to ISS, as shown by protection from death after massive systemic inflammation induced by a CpG-containing oligodeoxynucleotides.
Vertical double gate Z-RAM technology with remarkable low voltage operation for DRAM application (2010)

Vertical double gate floating body (FB) Z-RAM memory cell technology fabricated on a recess gate DRAM technology is presented. Cell operating voltage of 0.5V with comparable static retention and > 1000x improvement in dynamic retention is reported. The reported vertical double gate FB cell is the cell with the lowest operation voltage reported to date.
Method for the Analysis of Cannabinoids and Terpenes in Cannabis (2015)

The requirements for an acceptable cannabis assay have changed dramatically over the years resulting in a large number of laboratories using a diverse array of analytical methodologies that have not been properly validated. Due to the lack of sufficiently validated methods, we conducted a single- laboratory validation study for the determination of cannabinoids and terpenes in a variety of commonly occurring cultivars. The procedure involves high- throughput homogenization to prepare sample extract, which is then profiled for cannabinoids and terpenes by HPLC-diode array detector and GC-flame ionization detector, respectively. Spike recovery studies for terpenes in the range of 0.03-1.5% were carried out with analytical standards, while recovery studies for Δ9-tetrahydrocannabinolic acid, cannabidiolic acid, Δ9-tetrahydrocannabivarinic acid, and cannabigerolic acid and their neutral counterparts in the range of 0.3-35% were carried out using cannabis extracts. In general, accuracy at all levels was within 5%, and RSDs were less than 3%. The interday and intraday repeatabilities of the procedure were evaluated with five different cultivars of varying chemotype, again resulting in acceptable RSDs. As an example of the application of this assay, it was used to illustrate the variability seen in cannabis coming from very advanced indoor cultivation operations.
Borverbindungen, XIX1) Cyclisierungen von Bor‐Stickstoff‐Verbindungen in der Hitze (1968)

Abstract Beim Erhitzen von organischen Verbindungen mit H–B–N‐Gruppierung können sich unter Abspaltung von Wasserstoff cyclische Kohlenstoff‐Bor‐Stickstoff‐Verbindungen bilden. Organo‐Derivate von 2.3‐Dihydro‐1 H ‐2.1‐benzazaborol ( z. B. 6b 1 , 7b 1 ) oder von 3.4‐Dihydro‐2.1‐benz[ c ]azaborin ( z. B. 6b 2 ) erhält man aus N ‐Methyl‐benzylamino‐boran (1b 1 ) bzw. N ‐Methyl‐[2‐phenyl‐äthylamino]‐boran (1b 2 ) bei 200–230°. Tris‐biphenylylen‐(2.2′)‐borazin (10) entsteht bei 400–410° aus N.N.N ‐Tris‐biphenylyl‐(2)‐borazin (9) . Die Identifizierung dieser Verbindungen und der B ‐Alkyl‐Derivate 6c 1 und 6c 2 erfolgte vor allem mit Hilfe von IR‐ und Massenspektren.
Planar Photonics with Metasurfaces (2013)

Metamaterials, or engineered materials with rationally designed, subwavelength-scale building blocks, allow us to control the behavior of physical fields in optical, microwave, radio, acoustic, heat transfer, and other applications with flexibility and performance that are unattainable with naturally available materials. In turn, metasurfaces-planar, ultrathin metamaterials-extend these capabilities even further. Optical metasurfaces offer the fascinating possibility of controlling light with surface-confined, flat components. In the planar photonics concept, it is the reduced dimensionality of the optical metasurfaces that enables new physics and, therefore, leads to functionalities and applications that are distinctly different from those achievable with bulk, multilayer metamaterials. Here, we review the progress in developing optical metasurfaces that has occurred over the past few years with an eye toward the promising future directions in the field.
Epidermal Growth Factor in the Normal and Neoplastic Kidney and Bladder (1988)

Epidermal growth factor (EGF) is a cell-regulating polypeptide that appears important to the maintenance and function of some benign tissues and to the transformation and proliferation of certain malignancies. In humans the highest concentrations of EGF are found in the urine. We investigated possible interactions between EGF and normal and neoplastic tissues of the urinary system with indirect immunohistochemical staining of paraffin-embedded tissue sections. A polyclonal antibody directed against mouse EGF but shown to react with human EGF was used in the assays. Positive staining was granular in nature and confined to the cytoplasm. Staining of the renal parenchyma (N = 5) was observed in the epithelium of the proximal and distal tubules and the collecting ducts. There was staining of clear cell (N = 6) and papillary (N = 3) carcinomas of the kidney. Staining of the normal urothelium (N = 5) was limited to superficial cells. All transitional cell (N = 21) and squamous (N = 2) carcinomas of the bladder stained. Subjectively, the staining intensity of the transitional cell carcinomas correlated inversely with tumor differentiation. In light of evidence that internalized, receptor-bound EGF is rapidly degraded, the striking immunohistochemical demonstration of cytoplasmic EGF suggests active synthesis. EGF synthesized by urothelial and renal carcinomas may be involved in an autocrine mechanism of malignant proliferation.
Toxicity and immunogenicity of a verotoxin 1 mutant with reduced globotriaosylceramide receptor binding in rabbits (1997)

The verotoxins (VT1 and VT2), produced by strains of enterohemorrhagic Escherichia coli, have been implicated in the pathogenesis of hemorrhagic colitis and the hemolytic uremic syndrome. To better understand the role of globotriaosylceramide (Gb3) receptor binding by the verotoxins in disease production, we examined the clinicopathologic effects of an intravenously (i.v.) administered verotoxin 1 mutant holotoxin (Phe30Ala) in rabbits. The substitution of alanine for phenylalanine 30 in the VT1 B subunit has been shown previously to reduce both Gb3 binding affinity and capacity in vitro. This reduction in receptor binding corresponded to a 10(5)-fold reduction in the toxic activity of VT1 on a Vero cell monolayer. In this study, purified 125I-labeled Phe30Ala was administered i.v. to rabbits to determine its specific distribution in rabbit tissues. In contrast to the rapid elimination of i.v. administered 125I-VT1 from the bloodstream, 125I-Phe30Ala had a 52-fold-longer half-life in serum and failed to localize preferentially in the gastrointestinal tract and central nervous system (CNS). Rabbits challenged with Phe30Ala at a dose equivalent to 10 times the 50% lethal dose (LD50) of VT1 showed no visible clinical symptoms typical of VT effect after 7 days. Administration of Phe30Ala at a dose equivalent to 100 times the LD50 of VT1, however, caused both clinical and histopathologic features indistinguishable from VT1 toxemia in rabbits, although the onset of symptoms was delayed. Rabbits were immunized with Phe30Ala and challenged i.v. with either 125I-VT1 or 125I-VT2. The specific uptake of 125I-VT1 in the gastrointestinal tract and CNS was totally inhibited in Phe30Ala immune rabbits. Only a partial decrease in target organ uptake was observed in Phe30Ala immune rabbits challenged with 125I-VT2. From this study, we conclude that Gb3 binding is responsible for target organ localization of VT1 and disease production in the rabbit. The ability of Phe30Ala to induce both strong antibody and protective responses against VT1 suggests that VT mutants with reduced receptor binding properties may be useful in vaccine strategies. A further reduction in the toxicity of Phe30Ala would be required for its use as a natural toxoid to protect against human verotoxigenic E. coli infections.
Novel T cell antigen 4-1BB associates with the protein tyrosine kinase p56lck1. (1993)

4-1BB is a 30-kDa inducible T cell Ag, and is expressed predominantly as a 55-kDa dimer on both CD4+ and CD8+ T lymphocytes. The cytoplasmic tail of 4-1BB contains the sequence Cys-Arg-Cys-Pro, which is similar to the sequence Cys-X-Cys-Pro, which mediates the binding of the CD4 and CD8 molecules to the protein tyrosine kinase p56lck. An anti-4-1BB mAb, 53A2, was used to determine whether 4-1BB may associate with p56lck. The 53A2 mAb specifically recognized 4-1BB on a CD8+ T cell line, CTLL-2, and coimmunoprecipitated a 56-kDa protein along with 4-1BB. Peptide mapping indicated that the 56-kDa phosphoprotein was identical to p56lck. The coimmunoprecipitation of p56lck with 4-1BB also occurred in nonlymphoid cells such as insect (Sf-21) and HeLa cells when the two recombinant proteins were coexpressed. Analysis of mutant p56lck recombinant proteins showed that two cysteine residues critical for p56lck-CD4 (or -CD8) complex formation are also required for the p56lck-4-1BB interaction. These studies establish that 4-1BB physically associates with p56lck.
Network A/B Testing (2015)

A/B testing, also known as bucket testing, split testing, or controlled experiment, is a standard way to evaluate user engagement or satisfaction from a new service, feature, or product. It is widely used in online websites, including social network sites such as Facebook, LinkedIn, and Twitter to make data-driven decisions. The goal of A/B testing is to estimate the treatment effect of a new change, which becomes intricate when users are interacting, i.e., the treatment effect of a user may spill over to other users via underlying social connections.When conducting these online controlled experiments, it is a common practice to make the Stable Unit Treatment Value Assumption (SUTVA) that each individual's response is affected by their own treatment only. Though this assumption simplifies the estimation of treatment effect, it does not hold when network interference is present, and may even lead to wrong conclusion.
The ground test accelerator control system database: configuration, run-time operation, and access (2003)

A database is used to implement the interface between the control system and the accelerator and to provide flexibility in configuring the I/O (input/output). This flexibility is necessary to allow the control system to keep pace with the changing requirements inherent in an experimental environment. It is noted that this is not achieved without cost. Problems often associated with using databases are painful data entry, poor performance, and knowledge of the database structure embedded in code throughout the control system. The author describes how the database configuration, access, conversion, and execution in the Ground Test Accelerator (GTA) Control System overcome these problems. The database is configured using an interactive tool that requires minimal training. The configuration tool provides a variety of modification and reporting facilities to aid the application engineers. Database access routines provide a run-time binding to the database and remove the need for code to know the structure of the database in order to access the data. The routines provide the interface with a minimum of overhead. Database scan routines are compiled with knowledge of the database structure to efficiently process the I/O. Attention to the potential problems of using a database along with increased processor bandwidth has results in flexibility and excellent performance.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Secure and precise location verification using distance bounding and simultaneous multilateration (2009)

Due to the widespread adoption of the Global Positioning System (GPS), many systems have been designed to use the location information of participants. When these systems confer rights (such as access rights) based on location, such claim must be securely verified in order to prevent attackers from gaining access to resources that should be restricted. Substantial effort has been made on secure location verification; however, previous work does not address the impact of collusion attacks where adversaries share their private keys nor do they address a possible jamming attack where attackers inject a high amount of noise to prevent successful challenge and response receptions. In this paper, we propose a secure multilateration scheme that provides maximal security achievable by any time-of-flight based system that does not employ other verification methods.
Sandoz axes cyclosporine research. (1995)

The Swiss pharmaceutical company, Sandoz, canceled research on the compound NIM 811, even though it has been discovered to inhibit HIV three times more potently than their drug cyclosporine. Although NIM 811 is a 1,700-fold weaker immunosuppressant, it seems preferable to cyclosporine on the basis of safety and efficacy for HIV treatment. Sandoz claims they cannot make sufficient quantities of the molecule for human trials. Sandoz may have an underlying business strategy for stopping the research; their main interest is bone marrow and organ transplants, not infectious diseases. Sandoz will make NIM 811 available to outside researchers. There is some question of whether Sandoz will license the drug if it is impossible to mass produce.
Activity of in situ stellate ganglion neurons of dogs recorded extracellularly (1986)

Activity was recorded from 145 neurons in the in situ stellate ganglia of 36 dogs. The activity of 28 of these neurons, most of them located in the ganglia's cranial medial region, was related to the cardiac cycle primarily during systole. The activity of 16 of these cardiovascular-related neurons was modified by gentle mechanical distortion of the superior vena cava (1), heart (4), or thoracic aorta (11). Forty-one of the neurons were modified by respiration, with 17 being phase-locked to the respiratory cycle. Other neurons were activated by gentle mechanical distortion of localized regions of the thoracic wall (21% of all neurons), neck (18%), skin of the left foreleg (10%), or the mediastinum adjacent to the stellate ganglion (3%). Acutely decentralizing the stellate ganglion abolished the spontaneous activity of some, but not all, of these neurons including the respiratory or cardiovascular-related neurons. In the intact or acutely decentralized stellate ganglion, few neurons were activated by single short duration (1-4 ms) stimuli delivered to nerves attached directly or indirectly to the ganglion; however, most were activated by brief high frequency stimuli delivered in trains of 20-200 ms, or by single stimuli lasting 20-200 ms. As most cardiovascular, respiratory, or neck-related neurons in the stellate ganglion were not activated by single brief stimuli delivered to the cardiopulmonary nerves or vagosympathetic trunks, presumably they did not project their axons into the neck or thoracic organs. Thus, they were considered to be interneurons. It is postulated that interneurons in stellate ganglia can be modified by afferent receptors located in tissues of the neck, lungs, heart, or great thoracic vessels, whether the ganglion is intact or acutely decentralized. In addition, neurons in the stellate ganglion can be modified by mechanoreceptors located in the thoracic wall, abdominal wall, foreleg, or adjacent mediastinum. The majority of these neurons are activated by trains of impulses rather than single short duration impulses.