gebhart/patrepeval huggingface dataset:
Syngas production by simultaneous splitting of H2O and CO2via ceria redox reactions in a high-temperature solar reactor (2011)

Solar syngas production from H2O and CO2 is experimentally investigated using a two-step thermochemical cycle based on cerium oxide redox reactions. A solar cavity-receiver containing porous ceria felt is directly exposed to concentrated thermal radiation at a mean solar concentration ratio of 2865 suns. In the first endothermic step at 1800 K, ceria is thermally reduced to an oxygen deficient state. In the second exothermic step at 1100 K, syngas is produced by re-oxidizing ceria with a gas mixture of H2O and CO2. The syngas composition is experimentally determined as a function of the molar co-feeding ratio H2O : CO2 in the range of 0.8 to 7.7, yielding syngas with H2 : CO molar ratios from 0.25 to 2.34. Ten consecutive H2O/CO2-splitting cycles performed over an 8 hour solar experimental run are presented.
How cells (might) sense microgravity (1999)

This article is a summary of a lecture presented at an ESA/NASA Workshop on Cell and Molecular Biology Research in Space that convened in Leuven, Belgium, in June 1998. Recent studies are reviewed which suggest that cells may sense mechanical stresses, including those due to gravity, through changes in the balance of forces that are transmitted across transmembrane adhesion receptors that link the cytoskeleton to the extracellular matrix and to other cells (e.g., integrins, cadherins, selectins). The mechanism by which these mechanical signals are transduced and converted into a biochemical response appears to be based, in part, on the finding that living cells use a tension-dependent form of architecture, known as tensegrity, to organize and stabilize their cytoskeleton. Because of tensegrity, the cellular response to stress differs depending on the level of pre-stress (pre-existing tension) in the cytoskeleton and it involves all three cytoskeletal filament systems as well as nuclear scaffolds. Recent studies confirm that alterations in the cellular force balance can influence intracellular biochemistry within focal adhesion complexes that form at the site of integrin binding as well as gene expression in the nucleus. These results suggest that gravity sensation may not result from direct activation of any single gravioreceptor molecule. Instead, gravitational forces may be experienced by individual cells in the living organism as a result of stress-dependent changes in cell, tissue, or organ structure that, in turn, alter extracellular matrix mechanics, cell shape, cytoskeletal organization, or internal pre-stress in the cell-tissue matrix.--Ingber, D. How cells (might) sense microgravity.
Predicting Deep Zero-Shot Convolutional Neural Networks Using Textual Descriptions (2015)

One of the main challenges in Zero-Shot Learning of visual categories is gathering semantic attributes to accompany images. Recent work has shown that learning from textual descriptions, such as Wikipedia articles, avoids the problem of having to explicitly define these attributes. We present a new model that can classify unseen categories from their textual description. Specifically, we use text features to predict the output weights of both the convolutional and the fully connected layers in a deep convolutional neural network (CNN). We take advantage of the architecture of CNNs and learn features at different layers, rather than just learning an embedding space for both modalities, as is common with existing approaches. The proposed model also allows us to automatically generate a list of pseudo-attributes for each visual category consisting of words from Wikipedia articles. We train our models end-to-end using the Caltech-UCSD bird and flower datasets and evaluate both ROC and Precision-Recall curves. Our empirical results show that the proposed model significantly outperforms previous methods.
Translation initiation factor eIF-4G is immunogenic, overexpressed, and amplified in patients with squamous cell lung carcinoma (2001)

The translation initiation factor eIF-4G is the first protein in which the gene shows amplification, has increased expression in a human tumor, and induces an immune response in patients. eIF-4G lends itself as a marker for the diagnosis of and possibly as a future therapeutic target in patients with squamous cell lung carcinoma.
Expression of NG2 proteoglycan causes retention of type VI collagen on the cell surface. (1993)

NG2 is a membrane-associated chondroitin sulfate proteoglycan with a core protein of 300 kD. Previously it was shown immunochemically that the core protein of NG2 can bind type VI collagen (Stallcup, W., Dahlin, K., and P. Healy. 1990. J. Cell Biol. 111:3177-3188). We have extended our studies on the interaction of NG2 and type VI collagen by transfecting cells with the full-length rat NG2 cDNA. B28 rat neural cells and U251MG human glioma cells used for transfection do not synthesize NG2. Both cell lines secrete type VI collagen into tissue culture medium but do not anchor it at the cell surface. Upon transfection of these cells with the NG2 cDNA, NG2 was correctly localized to the cell surface. Furthermore, type VI collagen could now be detected on the surface of NG2-positive cells in a pattern that coincided with that of NG2. This ability of NG2 to anchor type VI collagen to the cell surface could be abolished by incubating the cells in the presence of anti-NG2 monoclonal antibodies. These findings indicate that NG2 functions as a cell surface receptor for type VI collagen and may play a role in modulating the assembly of pericellular matrix.
Carbonic Anhydrase Inhibitors. Inhibition of Cytosolic Isozymes I and II and Transmembrane, Cancer-associated Isozyme IX with Anions (2003)

Except for sulfonamides, metal complexing anions represent the second class of inhibitors of the zinc enzyme carbonic anhydrase (CA, EC 4.2.1.1). The first inhibition study of the transmembrane, tumor-associated isozyme CA IX with anions is reported here. Inhibition data of the cytosolic isozymes CA I and CA II with a large number of anionic species such as halides, pseudohalides, bicarbonate, nitrate, hydrosulfide, arsenate, etc., are also provided for comparison. Isozyme IX has an inhibition profile by anions different in some aspects from those of CA I and CA II, that may have interesting physiological consequences.
The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli. (1991)

The in vitro and in vivo analysis of the ribonuclease E-deficient (rne-) and the altered mRNA stability protein-deficient (ams-) strains of Escherichia coli has demonstrated that they carry mutations in the same structural gene. Strains encoding either thermolabile RNase E (rne-3071) or Ams protein (ams-1) are defective in both rRNA processing and mRNA turnover. Immediately after a shift to the nonpermissive temperature, the chemical decay rate of bulk mRNA is slowed 2- to 3-fold, and within 70 min, precursors to 5S rRNA begin to accumulate. In addition, all of the phenotypes associated with either the rne-3071 or the ams-1 alleles were complemented by a recombinant plasmid carrying ams+. When taken together with previous genetic studies, these results suggest that the role of ribonuclease E in mRNA turnover involves endonucleolytic cleavages at the proposed ACAG(A/U)AUUUG consensus sequence.
The Salvage of Heparinized Blood with Acid‐Citrate‐Dextrose (1963)

Heparinized blood not used at operation may be salvaged by transfer to Acid‐Citrate‐Dextrose (ACD) within 24 hours after collection. Collection and transfer must be done in a closed system and adequate refrigeration maintained from collection to transfusion. In five experiments, post‐transfusion survival studies have shown the percentage of viable cells to fall to 70 per cent in about 12 days. Plasma p H, hemoglobin, and potassium levels were within the same range as those of ACD bloods stored for similar periods. Of 180 heparinized bloods not used because of changes in operative schedules, 158 were salvaged and transfused, within this limit, in other cases.
A polysilicon-diaphragm-based pressure sensor technology (1987)

The fabrication of capacitive pressure sensors, using silicon integrated circuit processes is described. Polysilicon diaphragms are laid down using the conventional LPCVD technique. A cavity between the polysilicon layer and silicon substrate is created by etching away an intermediate oxide layer. The subsequently sealed cavity with deformable polysilicon membrane decreases in volume with a positive differential pressure between outside and inside. Capacitance changes between an electrode on the membrane and the silicon substrate allow pressure changes to be measured. The batch fabrication technology for microminiature device manufacture is described and electrical characteristics of the devices presented.
A capacitor-over-bit-line (COB) cell with a hemispherical-grain storage node for 64 Mb DRAMs (2002)

A novel capacitor-over-bit-line (COB) cell with a hemispherical-grain (HSG) poly-Si storage node has been developed. This memory cell provides large storage capacitance by increasing the effective surface area of a simple storage node and is manufacturable by optical delineation. The feasibility of the COB cell for 64-Mb DRAMs has been verified by a 64-kb test memory with 1.8- mu m/sup 2/ cells using a 0.4- mu m design rule, storage capacitance of 30 fF, 7-nm-SiO/sub 2/-equivalent dielectric film, and a storage node height of 0.5 mu m.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Sequence, function, and regulation of the Vmw65 gene of herpes simplex virus type 2 (1991)

We determined the sequence of the gene for the virion transactivator protein Vmw65 of herpes simplex virus type 2 (HSV-2), strain 333. An analysis of the coding sequence revealed an overall high degree of primary sequence conservation (86%) relative to the HSV-1 protein, although the carboxy-terminal region which encompasses the powerful acidic transactivation domain of the HSV-1 protein was slightly less well conserved (70%). One important change in this region was the presence of a proline residue in a region of the HSV-2 protein which is thought to form an amphipathic alpha-helix in the HSV-1 homolog. Despite the occurrence of this helix-disrupting residue, the HSV-2 protein exhibited powerful transactivation properties for immediate-early target promoters. We also demonstrated that the HSV-2 protein forms a transcriptional complex (TRF.C) with the cellular Oct-1 protein and target TAATGARAT elements from immediate-early promoters. A comparison of upstream sequences from the two Vmw65 genes revealed good conservation of proximal promoter elements but considerable divergence elsewhere. Specifically, the HSV-2 promoter alone carries 9.5 copies of a 9-bp direct repeat (GGGGCGGGA) ending 85 bp upstream of the conserved TTAAAT element. An analysis of transcription factor binding sites in vitro revealed that cellular factor Sp1 bound to the direct repeat sequence of the HSV-2 promoter and that cellular factor USF bound to a proximal element present in both HSV-1 and HSV-2 promoters. Mutational analysis of the HSV-2 promoter demonstrated that the integrity of both of these binding sites was important for the full activity of the promoter.
Cooperative congestion control schemes in ATM networks (1996)

One of the basic problems faced in the design of efficient traffic and congestion control schemes is related to the wide variety of services with different traffic characteristics and quality of service (QoS) requirements supported by ATM networks. The authors propose a new way of organizing the control system so that complexity is easier to manage. The multi-agent system approach, which provides the use of adaptative and intelligent agents, is investigated. The authors show, through the two congestion control schemes proposed, how to take advantage of using intelligent agents to increase the efficiency of the control scheme. First, TRAC (threshold based algorithm for control) is proposed, which is based on the use of fixed thresholds which enables the anticipation of congestion. This mechanism is compared with the push-out algorithm and it is shown that the authors' proposal improves the network performance. Also discussed is the necessity of taking into account the network dynamics. In TRAC, adaptative agents with learning capabilities are used to tune the values of the thresholds according to the status of the system. However, in this scheme, when congestion occurs, the actions we perform are independent of the nature of the traffic. Subsequently, we propose PATRAC (predictive agents in a threshold based algorithm for control) in which different actions are achieved according to the QoS requirements and to the prediction of traffic made by the agents. Specifically, re-routing is performed when congestion is heavy or is expected to be heavy and the traffic is cell loss sensitive. This re-routing has to deflect the traffic away from the congestion point. In this scheme, we propose a cooperative and predictive control scheme provided by a multi-agent system that is built in to each node.
Molecular Analysis of Fungal Microbiota in Samples from Healthy Human Skin and Psoriatic Lesions (2006)

Psoriasis, a common cutaneous disease of unknown etiology, may be triggered by infections, including those due to fungi. Since the fungal community of human skin is poorly characterized, we aimed to analyze the mycological microbiota in healthy skin and psoriatic lesions. Twenty-five skin samples from five healthy subjects (flexor forearm) and three patients with psoriasis were analyzed using broad-range 18S ribosomal DNA (rDNA) and 5.8S rDNA/internal transcribed spacer 2 (ITS2) Malassezia-specific PCR primers. Broad-range PCR analysis indicated that most organisms resembled Malassezia. Malassezia-specific 5.8S/ITS2 analysis of 1,374 clones identified five species and four unknown phylotypes, potentially representing new species. The species distribution appears largely host specific and conserved in different sites of healthy skin. In three subjects, the Malassezia microbiota composition appeared relatively stable over time. Samples of Malassezia microbiota from healthy skin and psoriatic lesions were similar in one patient but substantially different in two others. These data indicate the predominance of Malassezia organisms in healthy human skin, host-specific variation, stability over time, and as yet, no consistent patterns differentiating psoriatic skin from healthy skin.
Analysis is key to hydrotreater troubleshooting (1984)

When a hydrotreater is performing unsatisfactorily shortly after start-up, a systematic analysis of its operation will enable the refiner to identify the probable cause and take positive action to improve the situation. This article presents the general guidelines Cyanamid follows when troubleshooting hydrotreaters. A fault analysis process to isolate problems is graphically presented.
Antibodies to common leukocyte antigen p220 influence human T cell proliferation by modifying IL 2 receptor expression. (1985)

The p220 antigen is found on the high m.w. form of the T200 common leukocyte antigen family. Although T200 monoclonal antibodies (MAb) react with all hematopoietic cells, p220 MAb react only with B cells, NK cells, about 50% of CD4+ T helper cells, and about 90% of CD8+ T suppressor cells. The p220 antigen appears to play an important role in T cell activation, because anti-p220 MAb at doses as low as 5 ng/ml accelerate the proliferation kinetics of PHA-stimulated T cells and augment anti-CD3-driven proliferation when IL 2 is in excess. Fab fragments have no effect on PHA-stimulated cells but partially block proliferation in response to anti-CD3. Our data suggest that p220 is functionally related to expression of the IL 2 receptor. Anti-p220 MAb cause an increase in the number of T cells that express the IL 2 receptor early after activation. In addition, T cells begin to turn off expression of p220 after activation, and two-color immunofluorescence shows that by day 3 after activation the cells expressing the most IL 2 receptor have the least p220. The loss of p220 on T cells may reflect a post-thymic differentiation process related to cell activation. Our data are consistent with a model where the p220- T cells in peripheral blood are a more activated population of T cells that have lost p220 and its ability to regulate their IL 2 receptor expression.
Direct Therapeutic Applications of Calcium Electroporation to Effectively Induce Tumor Necrosis (2012)

Electroporation of cells with short, high-voltage pulses causes a transient permeabilization of cell membranes that permits passage of otherwise nonpermeating ions and molecules. In this study, we illustrate how electroporation with isotonic calcium can achieve highly effective cancer cell kill in vivo. Calcium electroporation elicited dramatic antitumor responses in which 89% of treated tumors were eliminated. Histologic analyses indicated complete tumor necrosis. Mechanistically, calcium electroporation caused acute ATP depletion likely due to a combination of increased cellular use of ATP, decreased production of ATP due to effects on the mitochondria, as well as loss of ATP through the permeabilized cell membrane. Taken together, our findings offer a preclinical proof of concept for the use of electroporation to load cancer cells with calcium as an efficient anticancer treatment. Electroporation equipment is already used clinically to enhance the delivery of chemotherapy to superficial tumors, with trials on internal tumors in progress, enabling the introduction of calcium electroporation to clinical use. Moreover, the safety profile, availability, and low cost of calcium facilitate access to this technology for many cancer patients in developed and developing countries.
The Complete DNA Sequence of the Long Unique Region in the Genome of Herpes Simplex Virus Type 1 (1988)

We have determined the DNA sequence of the long unique region (UL) in the genome of herpes simplex virus type 1 (HSV-1) strain 17. The UL sequence contained 107,943 residues and had a base composition of 66.9% G + C. Together with our previous work, this completes the sequence of HSV-1 DNA, giving a total genome length of 152,260 residues of base composition 68.3% G + C. Genes in the UL region were located by the use of published mapping analyses, transcript structures and sequence data, and by examination of DNA sequence characteristics. Fifty-six genes were identified, accounting for most of the sequence. Some 28 of these are at present of unknown function. The gene layout for UL was found to be very similar to that for the corresponding part of the genome of varicella-zoster virus, the only other completely sequenced alphaherpesvirus, and the amino acid sequences of equivalent proteins showed a range of similarities. In the whole genome of HSV-1 we now recognize 72 genes which encode 70 distinct proteins.
A novel latency-active promoter is contained within the herpes simplex virus type 1 UL flanking repeats (1994)

Herpes simplex virus type 1 (HSV-1) expresses a unique series of RNA molecules, the latency-associated transcripts or LATs, during latent infection of neuronal tissues. Previous studies by others have described a TATA box-containing latency-active promoter, referred to here as LAP1, located approximately 700 bp upstream of the 5' end of the major 2.0-kb LAT. In this report, transient gene expression assays were employed to identify a second, novel latency-active promoter (LAP2) present within a region downstream of LAP1 and 5' proximal to the major 2.0-kb LAT. In contrast to LAP1, this promoter lacks a TATA box but possesses cis-acting regulatory elements and other features frequently observed within eukaryotic housekeeping gene promoters. Unlike most other HSV promoters, LAP2 was down-regulated by the viral transcriptional activators ICP4 and ICP0. The majority of LAP2-positive regulatory elements were located within sequences from -257 to -58 relative to the 5' end of the 2.0-kb LAT, and the basal promoter mapped within sequences from -14 to +28. RNase protection experiments demonstrated that chimeric LAT-chloramphenicol acetyltransferase transcripts produced in the transient assays initiated at or near the 5' end of the major 2-kb LAT. Tn5 insertional mutagenesis of the ICP4 regulatory gene determined that down-regulation of LAP2 required the ICP4 transactivating domain and targeted the minimal promoter region as the site of action by ICP4. Replicating recombinant viruses containing a LAP2-lacZ reporter gene cassette in an ectopic site (glycoprotein C locus) were shown to be active in mouse trigeminal ganglia. Taken together, these experiments suggest that the LAT region of the HSV-1 genome contains at least two latency-active promoters which may play different roles in expressing the various LATs. Alternatively, these promoters may comprise a larger promoter-regulatory complex which may influence transcription during latency.
A computerized brain atlas: construction, anatomical content, and some applications. (1991)

An adjustable computerized atlas of the human brain has been developed, which can be adapted to fit individual anatomy. It is primarily intended for positron emission tomography (PET) but may also be used for single photon emission CT, transmission CT, magnetic resonance imaging, and neuroimaging-based procedures, such as stereotactic surgery and radiotherapy. The atlas is based on anatomical information obtained from brains fixed in situ soon after death. All structures have been drawn in on digitized photos of slices from one cryosectioned brain. The definition and classification of the anatomical structures and divisions are in agreement with the standard textbooks of anatomy, and the nomenclature is that of the Nomina Anatomica of 1965. The boundaries of the cortical cytoarchitectonic areas (Brodmann areas) have been determined using information from several sources, since three-dimensional literature data on their distribution are incomplete, scarce, and partly contradictory. However, no analysis of the cytoarchitectonics of the atlas brain itself has been undertaken. At present the data base contains three-dimensional representations of the brain surface, the ventricular system, the cortical gyri and sulci, as well as the Brodmann cytoarchitectonic areas. The major basal ganglia, the brain stem nuclei, the lobuli of the vermis, and the cerebellar hemispheres are also included. The computerized atlas can be used to improve the quantification and evaluation of PET data in several ways. For instance, it can serve as a guide in selecting regions of interest. It may also facilitate comparisons of data from different individuals or groups of individuals, by applying the inverse atlas transformation to PET data volume, thus relating the PET information to the anatomy of the reference atlas rather than to the patient's anatomy. Reformatted PET data from individuals can thus be averaged, and averages from different categories or different functional states of patients can be compared.
Oral Bisphosphonates and the Risk of Colorectal Cancer (2013)

These results indicate that the decrease in risk of colorectal cancer may be associated with the usage of bisphosphonates. More studies are needed to confirm the relationship.
One‐Step Production of Polymeric Microtubes by Co‐electrospinning (2007)

Herein we demonstrate the ability to fabricate polymeric microtubes with an inner diameter of approximately 3 microm through co-electrospinning of core and shell polymeric solutions. The mechanism by which the core/shell structure is transformed into hollow fibers (microtubes) is primarily based on the evaporation of the core solution through the shell and is described here in detail. Additionally, we present the filling of these microtubes, thus demonstrating their possible use in microfluidics. We also report the incorporation of a protein (green fluorescent protein) within such fibers, which is of interest for sensorics.