gebhart/patrepeval huggingface dataset:
New horizons for newborn brain protection: enhancing endogenous neuroprotection (2015)

Intrapartum-related events are the third leading cause of childhood mortality worldwide and result in one million neurodisabled survivors each year. Infants exposed to a perinatal insult typically present with neonatal encephalopathy (NE). The contribution of pure hypoxia-ischaemia (HI) to NE has been debated; over the last decade, the sensitising effect of inflammation in the aetiology of NE and neurodisability is recognised. Therapeutic hypothermia is standard care for NE in high-income countries; however, its benefit in encephalopathic babies with sepsis or in those born following chorioamnionitis is unclear. It is now recognised that the phases of brain injury extend into a tertiary phase, which lasts for weeks to years after the initial insult and opens up new possibilities for therapy.There has been a recent focus on understanding endogenous neuroprotection and how to boost it or to supplement its effectors therapeutically once damage to the brain has occurred as in NE. In this review, we focus on strategies that can augment the body's own endogenous neuroprotection. We discuss in particular remote ischaemic postconditioning whereby endogenous brain tolerance can be activated through hypoxia/reperfusion stimuli started immediately after the index hypoxic-ischaemic insult. Therapeutic hypothermia, melatonin, erythropoietin and cannabinoids are examples of ways we can supplement the endogenous response to HI to obtain its full neuroprotective potential. Achieving the correct balance of interventions at the correct time in relation to the nature and stage of injury will be a significant challenge in the next decade.
Sidewall Functionalization of Single-Walled Carbon Nanotubes by Addition of Dichlorocarbene (2003)

We report the sidewall functionalization of soluble HiPco single-walled carbon nanotubes (SWNTs) by addition of dichlorocarbene. The dichlorocarbene-functionalized SWNTs [(s-SWNT)CCl(2)] retain their solubility in organic solvents such as tetrahydrofuran and dichlorobenzene. The degree of dichlorocarbene functionalization was varied between 12% and 23% by using different amounts of the dichlorocarbene precursor. Because the addition of dichlorocarbene saturates the carbon atoms on the sidewall of the SWNTs and effectively replaces the delocalized partial double bonds with a cyclopropane functionality, the optical spectra of the SWNTs change dramatically. We estimate that the saturation of 25% of the pi-network electronic structure of the SWNTs is sufficient to remove all vestiges of the interband transitions in the infrared spectrum. The transitions at the Fermi level in the metallic SWNTs that appear in the far-infrared (FIR) region of the spectrum show a dramatic decrease of intensity on dichlorocarbene functionalization. The FIR region of the spectrum allows a clear differentiation between the covalent and the ionic chemistry of SWNTs. In contrast with covalent functionalization, we show that reaction of the SWNTs with bromine vapor leads to a strong increase in absorptions at the Fermi level that is observable in the FIR due to hole doping of the semiconducting SWNTs. Thermal treatment of the (s-SWNT)CCl(2) above 300 degrees C resulted in the breakage of C-Cl bonds, but did not restore the original electronic structure of the SWNTs.
Synthetic Double-Stranded RNA Poly(I:C) Combined with Mucosal Vaccine Protects against Influenza Virus Infection (2005)

The mucosal adjuvant effect of synthetic double-stranded RNA polyriboinosinic polyribocytidylic acid [poly(I:C)] against influenza virus was examined under intranasal coadministration with inactivated hemagglutinin (HA) vaccine in BALB/c mice and was shown to have a protective effect against both nasal-restricted infection and lethal lung infection. Intranasal administration of vaccine from PR8 (H1N1) with poly(I:C) induced a high anti-HA immunoglobulin A (IgA) response in the nasal wash and IgG antibody response in the serum, while vaccination without poly(I:C) induced little response. Intracerebral injection confirmed the safety of poly(I:C). In addition, we demonstrated that administration of poly(I:C) with either A/Beijing (H1N1) or A/Yamagata (H1N1) vaccine conferred complete protection against PR8 challenge in this mouse nasal infection model, suggesting that poly(I:C) possessed cross-protection ability against variant viruses. To investigate the mechanism of the protective effect of poly(I:C), mRNA levels of Toll-like receptors and cytokines were examined in the nasal-associated lymphoid tissue after vaccination or virus challenge. Intranasal administration of HA vaccine with poly(I:C) up-regulated expression of Toll-like receptor 3 and alpha/beta interferons as well as Th1- and Th2-related cytokines. We propose that poly(I:C) is a new effective intranasal adjuvant for influenza virus vaccine.
Osmotic Adjustment in Leaves of Sorghum in Response to Water Deficits (1978)

The relationships among the total water potential, osmotic potential, turgor potential, and relative water content were determined for leaves of sorghum (Sorghum bicolor [L.] Moench cvs. ;RS 610' and ;Shallu') with three different histories of water stress. Plants were adequately watered (control), or the soil was allowed to dry slowly until the predawn leaf water potential reached either -0.4 megapascal (MPa) (treatment A) or -1.6 MPa (treatment B). Severe soil and plant water deficits developed sooner after cessation of watering in ;Shallu' than in ;RS 610', but no significant differences in osmotic adjustment or tissue water relations were observed between the two cultivars. In both cultivars, the stress treatments altered the relationship between leaf water potential and relative water content, resulting in the previously stressed plants maintaining higher tissue water contents than control plants at the same leaf water potential. The osmotic potential at full turgor in the control sorghum was -0.7 MPa: stress pretreatment significantly lowered the osmotic potential to -1.1 and -1.6 MPa in stress treatments A and B, respectively. As a result of this osmotic adjustment, leaf turgor potentials at a given value of leaf water potential exceeded those of the control plants by 0.15 to 0.30 MPa in treatment A and by 0.5 to 0.65 MPa in treatment B. However, zero turgor potential occurred at approximately the same value of relative water content (94%) irrespective of previous stress history. From the relationship between turgor potential and relative water content there was an approximate doubling of the volumetric elastic modulus, i.e. a halving of tissue elasticity, as a result of stress preconditioning. The influence of stress preconditioning on the moisture release curve is discussed.
Phenotypic and genotypic characterization of antibiotic-resistant Propionibacterium acnes isolated from acne patients attending dermatology clinics in Europe, the U.S.A., Japan and Australia (2001)

This study shows that 23S and 16S mutations identified in the U.K. conferring antibiotic resistance in P. acnes are distributed widely. However, resistant strains were isolated in which mutations could not be identified, suggesting that as yet uncharacterized resistance mechanisms have evolved. This is the first report of high-level resistance to minocycline and is of concern as these strains are predicted to be clinically resistant and are unlikely to remain confined to the U.S.A. Epidemiological studies are urgently required to monitor how resistant strains are selected, how they spread and to ascertain whether the prevalence of resistance correlates with antibiotic usage patterns in the different countries.
Instability of dinucleotide repeats in Hodgkin's disease (1998)

Tumorigenesis has been shown to proceed through a series of genetic alterations involving protooncogenes and tumor suppressor genes. However, the investigation of genomic instability of microsatellites has disclosed a new mechanism for human carcinogenesis, which is involved not only in hereditary nonpolyposis colon cancer (HNPCC) but in a number of other malignancies as well. To determine whether microsatellite instability is involved in Hodgkin's disease, we screened 16 such tumors using 7 microsatellite marker loci on 6 chromosome arms 4, 5, 9p, 9q, 11, 14, and 17. Using the polymerase chain reaction method, DNA samples from the tumors and from normal peripheral blood leukocytes from each patient were compared for the allelic pattern produced at each locus. Five cases of genomic instability were identified, suggesting that this mechanism is relevant to the pathogenesis of HD. Am. J. Hematol. 57:148–152, 1998. © 1998 Wiley-Liss, Inc.
Importance of specific purine amino and hydroxyl groups for efficient cleavage by a hammerhead ribozyme. (1992)

Eight modified ribozymes of 19 residues have been prepared with individual purine amino or hydroxyl groups excised. The modified ribozymes were chemically synthesized with the substitution of a single 2'-deoxyadenosine, 2'-deoxyguanosine, inosine, or purine riboside for residues G10, A11, G13, or A14. Five of the modified ribozymes cleaved the 24-mer substrate with little change in rate as monitored by simple first-order kinetics. However, deletion of the 2-amino group at G10 (replacement with inosine) or deletion of either of the 2'-hydroxyls at G10 or G13 (replacement with 2'-deoxyguanosine) resulted in ribozymes with a drastic decrease in cleavage efficiency. Increasing the concentration of the Mg2+ cofactor from 10 mM to 50 mM significantly enhanced cleavage efficiency by these three derivatives. Steady-state kinetic assays for these three ribozymes indicated that the modifications result in both an increase in Km and a decrease in kcat. These results suggest that the exocyclic amino group at-G10 and the hydroxyls at G10 and G13 are important both for ribozyme-substrate binding and for the Mg(2+)-catalyzed cleavage reaction.
A novel technique for the blind estimation of a channel matrix (2002)

In this paper, a novel technique is presented for blindly estimating the channel matrix in an M-sensor K-source system. A special estimated higher-order cumulant matrix of the received data is first constructed. The channel matrix is then estimated by the eigendecomposition of the cumulant matrix. This method does not need any prior information of the signal. Computer simulation results are presented showing that the proposed algorithm is very promising.
Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by Caesarean section (2013)

CS was associated with a lower total microbial diversity, delayed colonisation of the Bacteroidetes phylum and reduced Th1 responses during the first 2 years of life.
Occurrence of holoprosencephaly in chromosome 13 disorders cannot be explained by duplication/deficiency of a single locus (1986)

Four cases of holoprosencephaly with duplication/deletion involving chromosome 13 are presented and additional cases are summarized from the literature. When examined as a series, the duplications (trisomy 13, trisomy 13pter----q14) and deletions (deletion 13q12----qter, deletion 13q31----qter, ring 13 with deletion 13q14----qter) exclude deletion or duplication of single chromosome 13 bands as the cause for holoprosencephaly. Increased dosage of the 13pter----q14 region relative to the 13q14----qter region as the cause is also ruled out by the duplication 13q21----qter cases reported in the literature. Altered timing of forebrain development, causing reversion to a more primitive embryonic and phylogenetic brain structure, is related to dosage imbalance of at least two chromosome 13 regions.
Semantic browsing of video surveillance databases through Online Generic Indexing (2009)

This paper gives a thorough overview of EADS UrbanVIEW indexing and mining platform aimed at providing police forces and security officers with advanced tools to efficiently browse large video surveillance databases for investigation purposes. A scalable indexing architecture that works indifferently with smart or classical camera networks as well as for real-time or a posteriori indexing has been designed and implemented. We introduce the concept of online generic indexing strategy (OGIS) aimed at systematically enriching each video stream with real-time extracted generic metadata allowing to dramatically decrease post-event investigation time. The indexing strategy relies on the systematic detection, tracking and characterization of all observed moving objects. Semantic and non semantic metadata produced by embedded or distributed video analytics modules can be used either to browse the distributed video databases or as inputs to higher level characterization modules (object identification, multi-camera back-tracking, event recognition...). Once a first observation of an object of interest has been found, it can be forward and backward tracked thanks to an interactive multi-stream player taking into account the multi-camera context. Our platform has been assessed on the NGSIM and I-LIDS datasets which consist of real heavy traffic images, showing both high recall and high detection rates in its retrieval capabilities.
Cap-independent translation of mRNA conferred by encephalomyocarditis virus 5' sequence improves the performance of the vaccinia virus/bacteriophage T7 hybrid expression system. (1989)

A recombinant vaccinia virus that directs the synthesis of bacteriophage T7 RNA polymerase provides the basis for the expression of genes that are regulated by T7 promoters in mammalian cells. The T7 transcripts, which account for as much as 30% of the total cytoplasmic RNA at 24 hr after infection, are largely uncapped. To improve the translatability of the uncapped RNA, the encephalomyocarditis virus (EMCV) untranslated region (UTR) was inserted between the T7 promoter and the chloramphenicol acetyltransferase (CAT) gene. Experiments with a reticulocyte extract demonstrated that the EMCV UTR conferred efficient and cap-independent translatability to CAT RNA synthesized in vitro by T7 RNA polymerase. In cells infected with recombinant vaccinia viruses containing the T7 promoter-regulated CAT gene, the EMCV UTR increased the amount of CAT RNA on polyribosomes. The polyribosome-derived CAT RNA, which contained the EMCV UTR, was translated in vitro in a cap-independent fashion as well. Use of the EMCV UTR significantly enhanced the vaccinia/T7 hybrid expression system as it resulted in a 4- to 7-fold increase in total CAT activity. A further approximately 2-fold improvement was achieved by incubating the cells in hypertonic medium, which favors the translation of uncapped picornavirus RNA over cellular mRNAs. With this newly modified expression system, CAT was the predominant protein synthesized by infected cells and within 24 hr accounted for greater than 10% of the total cell protein.
Synthesis of Phenylalanine Analogs as Antimetabolites (1951)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSynthesis of Phenylalanine Analogs as AntimetabolitesJ. H. Burckhalter and Verlin C. StephensCite this: J. Am. Chem. Soc. 1951, 73, 1, 56–58Publication Date (Print):January 1, 1951Publication History Published online1 May 2002Published inissue 1 January 1951https://pubs.acs.org/doi/10.1021/ja01145a022https://doi.org/10.1021/ja01145a022research-articleACS PublicationsRequest reuse permissionsArticle Views266Altmetric-Citations32LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Structures of Human Host Defense Cathelicidin LL-37 and Its Smallest Antimicrobial Peptide KR-12 in Lipid Micelles (2008)

As a key component of the innate immunity system, human cathelicidin LL-37 plays an essential role in protecting humans against infectious diseases. To elucidate the structural basis for its targeting bacterial membrane, we have determined the high quality structure of (13)C,(15)N-labeled LL-37 by three-dimensional triple-resonance NMR spectroscopy, because two-dimensional (1)H NMR did not provide sufficient spectral resolution. The structure of LL-37 in SDS micelles is composed of a curved amphipathic helix-bend-helix motif spanning residues 2-31 followed by a disordered C-terminal tail. The helical bend is located between residues Gly-14 and Glu-16. Similar chemical shifts and (15)N nuclear Overhauser effect (NOE) patterns of the peptide in complex with dioctanoylphosphatidylglycerol (D8PG) micelles indicate a similar structure. The aromatic rings of Phe-5, Phe-6, Phe-17, and Phe-27 of LL-37, as well as arginines, showed intermolecular NOE cross-peaks with D8PG, providing direct evidence for the association of the entire amphipathic helix with anionic lipid micelles. The structure of LL-37 serves as a model for understanding the structure and function relationship of homologous primate cathelicidins. Using synthetic peptides, we also identified the smallest antibacterial peptide KR-12 corresponding to residues 18-29 of LL-37. Importantly, KR-12 displayed a selective toxic effect on bacteria but not human cells. NMR structural analysis revealed a short three-turn amphipathic helix rich in positively charged side chains, allowing for effective competition for anionic phosphatidylglycerols in bacterial membranes. KR-12 may be a useful peptide template for developing novel antimicrobial agents of therapeutic use.
Salting-out solvent extraction for preconcentration of neutral polar organic solutes from water (1990)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSalting-out solvent extraction for preconcentration of neutral polar organic solutes from waterDaniel C. Leggett, Thomas F. Jenkins, and Paul H. MiyaresCite this: Anal. Chem. 1990, 62, 13, 1355–1356Publication Date (Print):July 1, 1990Publication History Published online1 May 2002Published inissue 1 July 1990https://pubs.acs.org/doi/10.1021/ac00212a029https://doi.org/10.1021/ac00212a029research-articleACS PublicationsRequest reuse permissionsArticle Views749Altmetric-Citations61LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS (2000)

Masahiro Yano, Yuichi Katayose, Motoyuki Ashikari, Utako Yamanouchi, Lisa Monna, Takuichi Fuse, Tomoya Baba, Kimiko Yamamoto, Yosuke Umehara, Yoshiaki Nagamura, Takuji Sasaki, Hd1, a Major Photoperiod Sensitivity Quantitative Trait Locus in Rice, Is Closely Related to the Arabidopsis Flowering Time Gene CONSTANS, The Plant Cell, Vol. 12, No. 12 (Dec., 2000), pp. 2473-2483
Mapping the heparin-binding sites on type I collagen monomers and fibrils. (1994)

The glycosaminoglycan chains of cell surface heparan sulfate proteoglycans are believed to regulate cell adhesion, proliferation, and extracellular matrix assembly, through their interactions with heparin-binding proteins (for review see Ruoslahti, E. 1988. Annu. Rev. Cell Biol. 4:229-255; and Bernfield, M., R. Kokenyesi, M. Kato, M. T. Hinkes, J. Spring, R. L. Gallo, and E. J. Lose. 1992. Annu. Rev. Cell Biol. 8:365-393). Heparin-binding sites on many extracellular matrix proteins have been described; however, the heparin-binding site on type I collagen, a ubiquitous heparin-binding protein of the extracellular matrix, remains undescribed. Here we used heparin, a structural and functional analogue of heparan sulfate, as a probe to study the nature of the heparan sulfate proteoglycan-binding site on type I collagen. We used affinity coelectrophoresis to study the binding of heparin to various forms of type I collagen, and electron microscopy to visualize the site(s) of interaction of heparin with type I collagen monomers and fibrils. Using affinity coelectrophoresis it was found that heparin has similar affinities for both procollagen and collagen fibrils (Kd's approximately 60-80 nM), suggesting that functionally similar heparin-binding sites exist in type I collagen independent of its aggregation state. Complexes of heparin-albumin-gold particles and procollagen were visualized by rotary shadowing and electron microscopy, and a preferred site of heparin binding was observed near the NH2 terminus of procollagen. Native or reconstituted type I collagen fibrils showed one region of significant heparin-gold binding within each 67-nm period, present near the division between the overlap and gap zones, within the "a" bands region. According to an accepted model of collagen fibril structure, our data are consistent with the presence of a single preferred heparin-binding site near the NH2 terminus of the collagen monomer. Correlating these data with known type I collagen sequences, we suggest that the heparin-binding site in type I collagen may consist of a highly basic triple helical domain, including several amino acids known sometimes to function as disaccharide acceptor sites. We propose that the heparin-binding site of type I collagen may play a key role in cell adhesion and migration within connective tissues, or in the cell-directed assembly or restructuring of the collagenous extracellular matrix.