gebhart/patrepeval huggingface dataset:
MAC reliable broadcast in ad hoc networks (2002)

Traditional wireless ad hoc medium access control (MAC) protocols often utilize control frames such as request-to-send (RTS), clear-to-send (CTS) and acknowledgement (ACK) to reliably deliver unicast data. However, little effort has been given to improve the reliable delivery of broadcast data. Often, broadcast data are transmitted blindly without any consideration of hidden terminals. In this paper, we proposed a novel MAC protocol, broadcast medium window (BMW) that reliably delivers broadcast data.
Nine Ways to Reduce Cognitive Load in Multimedia Learning (2003)

This article may be used for research, teaching and private study purposes. Any substantial or systematic reproduction, re-distribution, re-selling, loan or sub-licensing, systematic supply or distribution in any form to anyone is expressly forbidden. The publisher does not give any warranty express or implied or make any representation that the contents will be complete or accurate or up to date. The accuracy of any instructions, formulae and drug doses should be independently verified with primary sources. The publisher shall not be liable for any loss, actions, claims, proceedings, demand or costs or damages whatsoever or howsoever caused arising directly or indirectly in connection with or arising out of the use of this material. WAYS TO REDUCE MAYER COGNITIVE AND MORENO LOAD
Broad scope management accounting system and managerial performance: The impact of role ambiguity and functional difference (2012)

The purpose of this study was to examine whether role ambiguity mediates the relationship between broad scope management accounting system (MAS) and managerial performance. Further, this study also examined whether functional difference of activities moderates the association between broad scope MAS and role ambiguity, and between role ambiguity and managerial performance. The research subjects were marketing managers, production managers, and their supervisors of publicly-listed electronics manufacturing companies in Taiwan. Datawere collected from a survey and analyzed using confirmatory factor analysis. The relations between research variables were examined using path analysis. Results indicated that broad scope MAS did not directly influence managerial performance but through mediation of role ambiguity. The full mediation of role ambiguity was particularly pronounced in a marketing-oriented context.

	 

	Key words: Broad scope management accounting system (MAS), role ambiguity, managerial performance, functional difference.
Bacterial flagella-based propulsion and on/off motion control of microscale objects (2007)

Miniaturization of the power source and on-board actuation is the main bottleneck for the development of microscale mobile robots. As a possible solution, this letter proposes the use of flagellar motors inside the intact cell of Serratia marcescens bacteria for controlled propulsion of swimming robotic bodies. The feasibility of the proposed idea is demonstrated by propelling 10μm polystyrene beads at an average speed of 15±6μm∕s by several bacteria randomly attached on their surface. On/off motion control of the bead is achieved by introducing copper ions to stop the bacteria flagellar motors and ethylenediaminetetraacetic acid to resume their motion.
Large-scale detection of in vivo transcription errors (2013)

Accurate transmission and expression of genetic information are crucial for the survival of all living organisms. Recently, the coupling of mutation accumulation experiments and next-generation sequencing has greatly expanded our knowledge of the genomic mutation rate in both prokaryotes and eukaryotes. However, because of their transient nature, transcription errors have proven extremely difficult to quantify, and current estimates of transcription fidelity are derived from artificial constructs applied to just a few organisms. Here we report a unique cDNA library preparation technique that allows error detection in natural transcripts at the transcriptome-wide level. Application of this method to the model organism Caenorhabditis elegans revealed a base misincorporation rate in mRNAs of ~4 × 10(-6) per site, with a very biased molecular spectrum. Because the proposed method is readily applicable to other organisms, this innovation provides unique opportunities for studying the incidence of transcription errors across the tree of life.
Live gang migration of virtual machines (2011)

This paper addresses the problem of simultaneously migrating a group of co-located and live virtual machines (VMs), i.e, VMs executing on the same physical machine. We refer to such a mass simultaneous migration of active VMs as live gang migration. Cluster administrators may often need to perform live gang migration for load balancing, system maintenance, or power savings. Application performance requirements may dictate that the total migration time, network traffic overhead, and service downtime, be kept minimal when migrating multiple VMs. State-of-the-art live migration techniques optimize the migration of a single VM. In this paper, we optimize the simultaneous live migration of multiple co-located VMs. We present the design, implementation, and evaluation of a de-duplication based approach to perform concurrent live migration of co-located VMs. Our approach transmits memory content that is identical across VMs only once during migration to significantly reduce both the total migration time and network traffic. Using the QEMU/KVM platform, we detail a proof-of-concept prototype implementation of two types of de-duplication strategies (at page level and sub-page level) and a differential compression approach to exploit content similarity across VMs. Evaluations over Gigabit Ethernet with various types of VM workloads demonstrate that our prototype for live gang migration can achieve significant reductions in both network traffic and total migration time. Categories andSubjectDescriptors
Differential processing of stromal-derived factor-1α and stromal-derived factor-1β explains functional diversity (2003)

The chemokine stromal-derived factor-1 (SDF-1), which is constitutively expressed in most tissues as SDF-1alpha and SDF-1beta resulting from alternative gene splicing, regulates hematopoiesis, lymphocyte homing, B-lineage cell growth, and angiogenesis. Because SDF-1alpha and SDF-1beta are constitutively and ubiquitously expressed, their degradation must serve an important regulatory role. Here we show that SDF-1alpha and SDF-1beta are secreted as full-length molecules. When exposed to human serum, full-length SDF-1alpha (1-68) undergoes processing first at the COOH terminus to produce SDF-1alpha 1-67 and then at the NH2 terminus to produce SDF-1alpha 3-67. By contrast, full-length SDF-1beta (1-72) is processed only at the NH2 terminus to produce SDF-1beta 3-72. CD26/dipeptidyl peptidase is responsible for serum cleavage of SDF-1alpha and SDF-1beta at the NH2 terminus. Serum processing of SDF-1alpha at the COOH terminus, which has not been previously reported, reduces the ability of the polypeptide to bind to heparin and to cells and to stimulate B-cell proliferation and chemotaxis. The additional processing at the NH2 terminus renders both forms of SDF-1 unable to bind to heparin and to activate cells. The differential processing of SDF-1alpha and SDF-1beta provides biologic significance to the existence of 2 splice forms of the chemokine and adds a tool to precisely regulate SDF-1's biologic activity by changes in specific activity.
NOTE FOR VOL. I (2012)

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Anticancer Mechanisms of Cannabinoids (2016)

In addition to the well-known palliative effects of cannabinoids on some cancer-associated symptoms, a large body of evidence shows that these molecules can decrease tumour growth in animal models of cancer. They do so by modulating key cell signalling pathways involved in the control of cancer cell proliferation and survival. In addition, cannabinoids inhibit angiogenesis and decrease metastasis in various tumour types in laboratory animals. In this review, we discuss the current understanding of cannabinoids as antitumour agents, focusing on recent discoveries about their molecular mechanisms of action, including resistance mechanisms and opportunities for their use in combination therapy. Those observations have already contributed to the foundation for the development of the first clinical studies that will analyze the safety and potential clinical benefit of cannabinoids as anticancer agents.
Assessment of the antimetabolic effects of trypsin inhibitors from cowpea (Vigna unguiculata) and other legumes on development of the bruchid beetle Callosobruchus maculatus (1983)

Abstract Insect feeding trials were carried out whereby cowpea trypsin inhibitor (CPTI) was incorporated at various levels up to 10% in pelleted meals of both a susceptible variety of cowpea and another susceptible species of legume, the chickpea. The results confirmed that CPTI, prepared by affinity chromatography, is an effective antimetabolite against C. maculatus; furthermore, it is also effective when added to pelleted chickpea meals. Bioassays using soya bean trypsin inhibitor (SBTI) and lima bean trypsin inhibitor (LBTI) showed these protease inhibitors to be relatively ineffective. Methionine supplementation of meals of resistant cowpea resulted in increased adult survival from approximately 43 to 89% relative to the controls; addition of cysteine had a similar effect. Supplementation with both methionine and tryptophan, probably the next limiting amino acid in cowpea, did not increase adult survival any further. It is concluded that CPTI is an effective antimetabolite of C. maculatus and that this type of mechanism may be widespread. However, it relies upon a finely controlled balance within the host plant which has to make available sufficient nutrients for itself but insufficient to maintain predation since this example of resistance can be overcome by by‐passing the limiting sulphur amino‐acid block.
Tradeoffs in supporting two page sizes (1992)

As computer system main memories get larger and processor cycles-per-instruction (CPIs) get smaller, the time spent in handling translation lookaside buffer (TLB) misses could become a performance bottleneck. We explore relieving this bottleneck by (a) increasing the page size and (b) supporting two page sizes.
Design of a calf muscle ergometer for the study of local muscle blood flow. (1992)

A simple ergometer is described that allows highly reproducible plethysmographic measurements of blood flow to be made within 10 seconds of ceasing rhythmic quantitated exercise of the calf muscle. A power output of some 25 Watts is developed with a mechanical efficiency of some 20%. The device seems applicable to a variety of clinical assessments.
Roles of transforming growth factor beta in inhibition of androgen-induced growth of Shionogi carcinoma cells in serum-free medium. (1990)

Shionogi carcinoma 115 (SC115) has been accepted for 20 years as an androgen-responsive mouse mammary tumor. In a serum-free culture system we have established [Ham's F-12:Eagle's minimum essential medium (1:1, v/v) containing 0.1% bovine serum albumin], 10(-8) M testosterone markedly stimulates the growth of SC-3 cells (a cloned cell line from a SC115 tumor) via androgen receptor. The testosterone-induced growth of SC-3 cells, which has been shown to be mediated through autocrine fibroblast growth factor (FGF)-like peptide, was almost completely abolished by 1 ng/ml of transforming growth factor beta (TGF-beta). In the present study, mechanisms of the inhibitory effect of TGF-beta on the testosterone-induced growth of SC-3 cells were examined in the serum-free medium. Although the testosterone-induced growth was almost completely inhibited by TGF-beta, basic FGF- or FGF-like peptide (secreted from SC-3 cells by testosterone)-induced growth was only partially inhibited (45%) by TGF-beta. This difference can be explained by the fact that TGF-beta decreased the amount of testosterone-induced FGF-like peptide secreted from SC-3 cells to 18% of control. The TGF-beta-induced inhibition was found to be reversible. Furthermore, no significant effects of the TGF-beta treatment on number or affinity of both androgen and FGF receptors were demonstrated. The present findings show that TGF-beta markedly inhibits testosterone-induced secretion of FGF-like peptide from SC-3 cells and also inhibits growth-stimulatory effects of the secreted factor on SC-3 cells, probably via postreceptor mechanisms.
Development and Application of a Reverse Genetics System for Japanese Encephalitis Virus (2003)

Japanese encephalitis virus (JEV) is a common agent of viral encephalitis that causes high mortality and morbidity among children. Molecular genetic studies of JEV are hampered by the lack of a genetically stable full-length infectious JEV cDNA clone. We describe here the development of such a clone. A JEV isolate was fully sequenced, and then its full-length cDNA was cloned into a bacterial artificial chromosome. This was then further engineered so that transcription of the cDNA in vitro would generate synthetic RNAs with authentic 5' and 3' ends. The synthetic RNAs thus produced were highly infectious in susceptible cells (>10(6) PFU/ micro g), and these cells rapidly generated a high titer of synthetic viruses (>5 x 10(6) PFU/ml). The recovered viruses were indistinguishable from the parental virus in terms of plaque morphology, growth kinetics, RNA accumulation, protein expression, and cytopathogenicity. Significantly, the structural and functional integrity of the cDNA was maintained even after 180 generations of growth in Escherichia coli. A single point mutation acting as a genetic marker was introduced into the cDNA and was found in the genome of the recovered virus, indicating that the cDNA can be manipulated. Furthermore, we showed that JEV is an attractive vector for the expression of heterologous genes in a wide variety of cell types. This novel reverse genetics system for JEV will greatly facilitate research into JEV biology. It will also be useful as a heterologous gene expression vector and will aid the development of a vaccine against JEV.
Effect of self‐reinforced polyglycolide membranes on cortical bone: An experimental study on rats (1995)

Abstract A self‐reinforced polyglycolide (SR‐PGA) membrane has been developed recently by our research group and testing of it begun. To study the behavior of this membrane and its effect on cortical bone, 93 Wistar rats were operated on. SR‐PGA membrane was applied around the rats' femoral diaphyses, either over the periosteum or directly over the bone, after periosteal stripping. In a control group no membrane was applied, but the femoral periosteum was stripped away. The rats were sacrificed 1, 3, 6, 12, 24, and 30 weeks postoperatively. Radiology, histology, oxytetracycline fluorescence labeling, microradiography, and planimetry were used to determine the outcome. A fibrous tissue capsule had formed around and replaced the membrane. SR‐PGA membrane had a positive effect on new bone formation. Callus was frequently seen proximally and distally to the implant. Periosteal thickening occurred whether or not SR‐PGA membrane was used. PGA fibers decreased in number and diameter continuously until they vanished by 30 weeks. No infections or adverse reactions were encountered. Accordingly, SR‐PGA membrane is considered to be biocompatible and applicable in the treatment of cortical bone lesions such as comminuted fractures and defects. © 1995 John Wiley &amp; Sons, Inc.
Exact optimization for markov random fields with convex priors (2003)

We introduce a method to solve exactly a first order Markov random field optimization problem in more generality than was previously possible. The MRF has a prior term that is convex in terms of a linearly ordered label set. The method maps the problem into a minimum-cut problem for a directed graph, for which a globally optimal solution can be found in polynomial time. The convexity of the prior function in the energy is shown to be necessary and sufficient for the applicability of the method.
Deoxyribozymes as Inhibitors of Vascular Smooth Muscle Cell Growth (2004)

DNA enzymes, or DNAzymes, are all-DNA molecules with inherent catalytic activity that bind and cleave at their complementary sequence in the target mRNA through Watson-Crick base pairing. These agents have been successfully used to tease out the role the targeted gene plays in both cellular systems and in a variety of animal models. DNAzymes have the potential to serve as novel nucleic acid-based therapeutic agents in pathologies involving aberrant smooth muscle cell growth and a range of other disorders.
Replacement of chromosome segments with altered DNA sequences constructed in vitro. (1979)

We have developed a method that may be of general application for the stable introduction of foreign sequences or deletions, constructed in vitro, into the chromosomes of Saccharomyces cerevisiae. No vector sequences are present in the final strains. Ability to transform cells with DNA, availability of a single selective marker, and integration of the transforming DNA by homologous recombination into the chromosomes are the requirements of the system. Any isolated gene can be deleted or altered and then be used to replace the wild-type chromosomal copy. An internal deletion mutant of the his3 gene and a transposition of a galactose-inducible region into chromosome XV have been generated by using the ura3 gene as the selective marker.
Angiotensin II Increases Activity of the Epithelial Na+ Channel (ENaC) in Distal Nephron Additively to Aldosterone (2011)

Dietary salt intake controls epithelial Na+ channel (ENaC)-mediated Na+ reabsorption in the distal nephron by affecting status of the renin-angiotensin-aldosterone system (RAAS). Whereas regulation of ENaC by aldosterone is generally accepted, little is known about whether other components of RAAS, such as angiotensin II (Ang II), have nonredundant to aldosterone-stimulatory actions on ENaC. We combined patch clamp electrophysiology and immunohistochemistry in freshly isolated split-opened distal nephrons of mice to determine the mechanism and molecular signaling pathway of Ang II regulation of ENaC. We found that Ang II acutely increases ENaC Po, whereas prolonged exposure to Ang II also induces translocation of α-ENaC toward the apical membrane in situ. Ang II actions on ENaC Po persist in the presence of saturated mineralocorticoid status. Moreover, aldosterone fails to stimulate ENaC acutely, suggesting that Ang II and aldosterone have different time frames of ENaC activation. AT1 but not AT2 receptors mediate Ang II actions on ENaC. Unlike its effect in vasculature, Ang II did not increase [Ca2+]i in split-opened distal nephrons as demonstrated using ratiometric Fura-2-based microscopy. However, application of Ang II to mpkCCDc14 cells resulted in generation of reactive oxygen species, as probed with fluorescent methods. Consistently, inhibiting NADPH oxidase with apocynin abolished Ang II-mediated increases in ENaC Po in murine distal nephron. Therefore, we concluded that Ang II directly regulates ENaC activity in the distal nephron, and this effect complements regulation of ENaC by aldosterone. We propose that stimulation of AT1 receptors with subsequent activation of NADPH oxidase signaling pathway mediates Ang II actions on ENaC.
Tumor infiltrating lymphocytes in malignant melanoma - allies or foes? (2019)

This is an overview of current problematics regarding the role of tumor infiltrating lymphocytes (TILs) in malignant melanomas. Various and often conflicting data have been published, correlating tumor type, stage, prognosis, as well as sex and age of patients. This is partly due to heterogeneity in scaling systems and unstandardized TILs grading but also due to changes of tumor-host interactions. Melanomas are an immunologically heterogeneous group with variability of TILs, where distinct gene expression patterns were found in tumors with absent, and/or non- brisk TIL grade versus brisk TIL grade. However, the presence of TILs alone appears to be inadequate for implicating them as immunologically functional. Further characterisation of TIL phenotype and function is warranted. This especially concerns, evaluation of TILs of the suppressor phenotype but rather than as a prognostic factor, more for prediction of targeted immunotherapy.
Gene expression profiling of ductal carcinomas in situ and invasive breast tumors. (2003)

The known and novel genes discussed here represent targets for molecular characterization during breast cancer development as well as for designing novel strategies for diagnosis and treatment.
Development of an Electronic Radiologist's Office in a Private Institute (2000)

A computer system that improves the quality, user-friendliness, accessibility, and management of radiology data (images, reports, databases, knowledge) was implemented at a private institute. A picture archiving and communication system (PACS) was integrated with the radiology information system (RIS). Two servers and 12 personal computers form the integrated system. The first server is dedicated to management and archiving of Digital Imaging and Communications in Medicine (DICOM) images. The second server is dedicated to management of the RIS and archiving of patient data (Structured Query Language database), reports (hypertext markup language [HTML]), and images in the Joint Photographic Experts Group (JPEG) format (mini-PACS). There are three main client-server networks: a common network of imaging modalities (magnetic resonance imaging, computed tomography, ultrasonography, digital radiography) and two fast Ethernet networks (the PACS network and the RIS network). The RIS-PACS is linked remotely with other workstations and servers via Integrated Services Digital Network (ISDN). Images and reports can be distributed to referring physicians in the form of multimedia HTML and JPEG documents, which can also be used for quick and easy archiving, distribution, and reviewing within the institute. However, referring physicians have been reluctant to use electronic reports and images.
Genetic Diversity of Thread-sail Filefish Stephanolepis cirrhifer Populations in Korean Coastal Waters Inferred from Mitochondrial DNA Sequence Analysis (2011)

The genetic diversity and population genetic structure of thread-sail filefish, Stephanolepis cirrhifer (Temminck & Schlegel), were examined with a nucleotide sequence analysis of a 495bp fragment of the 5'-end of the cytochrome b gene in 113 fish collected from five populations from the south and east coasts of the Korean Peninsula. Seventeen variable nucleotide sites and 16 haplotypes were defined. The observed haplotypes had a shallow haplotype genealogy and no geographical association. Most of the populations had high haplotype diversity and low nucleotide diversity, and significant negative values for Fu's <TEX>$F_S$</TEX>, suggesting rapid, recent population growth from an ancestral population and sudden population expansion. The estimated pairwise fixation indices (<TEX>$F_{ST}$</TEX>) indicate that substantial gene flow occurs among these populations. Thread-sail filefish in the South Sea of Korea and East Sea Korean populations forms a single panmictic population. Thus, thread-sail filefish in these areas should be treated as one management unit.