gebhart/patrepeval huggingface dataset:
Tuning the Performance and the Stability of Porous Hollow PtNi/C Nanostructures for the Oxygen Reduction Reaction (2015)

Due to their increased surface area to volume ratio and molecular accessibility, microporous and mesoporous materials are a promising strategy to electrocatalyze the cathodic oxygen reduction reaction (ORR), the key reaction in proton-exchange membrane fuel cells (PEMFC). Here, we synthesized and provided atomically resolved pictures of porous hollow PtNi/C nanocatalysts, investigated the elemental distribution of Ni and Pt atoms, measured the Pt lattice contraction, and correlated these observations to their ORR activity. The best porous hollow PtNi/C nanocatalyst achieved 6 and 9-fold enhancement in mass and specific activity for the ORR, respectively over standard solid Pt/C nanocrystallites of the same size. The catalytic enhancement was 4 and 3-fold in mass and specific activity, respectively, over solid PtNi/C nanocrystallites with similar chemical composition, Pt lattice contraction, and crystallite size. Furthermore, 100% of the initial mass activity at E = 0.90 V vs RHE (0.56 A mg–1 Pt) of the best electrocatalyst was retained after an accelerated stress test composed of 30 000 potential cycles between 0.60 and 1.00 V vs RHE (0.1 M HClO4 T = 298 K), therefore meeting the American Department of Energy targets for 2017–2020 both in terms of mass activity and durability (0.44 A mg–1 Pt, mass activity losses < 40%). The better catalytic activity for the ORR of hollow PtNi/C nanocatalysts is ascribed to (i) their opened porosity, (ii) their preferential crystallographic orientation (“ensemble effect”), and (iii) the weakened oxygen binding energy induced by the contracted Pt lattice parameter (“strain effect”).
A transforming growth factor beta receptor type II gene mutation common in colon and gastric but rare in endometrial cancers with microsatellite instability. (1995)

We have recently demonstrated that mutation of the transforming growth factor-beta (TGF-beta) receptor type II (RII) gene is characteristic of colon cancers exhibiting microsatellite instability or replication errors (RER+). Moreover, we have shown that RII mutations in these RER+ colon cancers are characteristically frameshift mutations within a 10-bp polyadenine repeat present in the RII-coding region. We now show that RII gene mutations in this polyadenine repeat are also commonly present in RER+ gastric cancers (71%). In contrast, we find these same RII gene mutations are distinctly uncommon in RER+ endometrial cancers (17%, P < 0.02). These results suggest that RII gene mutations confer a growth advantage and are selected for in RER+ cancers of both the upper and lower gastrointestinal tract. The genesis of RER+ endometrial tumors must, however, be by a different route.
Modulators of Tumor Necrosis Factor .ALPHA. Production Bearing Dicarba-closo-dodecaborane as a Hydrophobic Pharmacophore. (2000)

Previous studies on the structural development of tumor necrosis factor alpha (TNF-alpha) production regulators derived from thalidomide (N-alpha-phthalimidoglutarimide) revealed that a hydrophobic substituent at the nitrogen atom of the phthalimide ring is critical for potent activity. We have designed and prepared phthalimide derivatives bearing a boron cluster, dicarba-closo-dodecaborane (carborane), which has a hydrophobic character and spherical geometry, as a novel candidate of biological response modifiers. These compounds were shown to regulate TNF-alpha production by HL-60 cells, as expected. The result provides a further example of the application of carborane as a hydrophobic pharmacophore of biologically active molecules.
Spontaneous assembly of double-stranded helicates from oligobipyridine ligands and copper(I) cations: structure of an inorganic double helix. (1987)

Two oligobipyridine ligands containing two and three 2,2'-bipyridine subunits separated by 2-oxapropylene bridges have been synthesized and some of their complexation properties with metal ions have been investigated. In particular, with copper(I) they form, respectively, a dinuclear and a trinuclear complex containing two ligand molecules and two or three Cu(I) ions. In view of the pseudotetrahedral coordination geometry of Cu(I) X bis(bipyridine) sites and of NMR data indicating that the present complexes are chiral, one may assign to these dinuclear and trinuclear species a double-helical structure in which two molecular strands are wrapped around two or three Cu(I) ions, which hold them together. These complexes may thus be termed "double-stranded helicates." Determination of the crystal structure of the trinuclear species has confirmed that it is indeed an inorganic double helix, possessing characteristic features (helical parameters, stacking of bipyridine bases) reminiscent of the DNA double helix. This spontaneous formation of an organized structure by oligobipyridine ligands and suitable metal ions opens ways to the design and study of self-assembling systems presenting cooperativity and regulation features. Various further developments may be envisaged along organic, inorganic, and biochemical lines.
Chemokine receptors and human immunodeficiency virus infection (1998)

Primate lentiviruses infect target cells by interacting with the cell surface protein, CD4 and additional molecules, termed coreceptors. Recently, HIV-1 coreceptors have been identified as seven transmembrane spanning, G-protein coupled receptors of the chemokine receptor family. Thus, expression of CD4 and an appropriate coreceptor is both necessary and sufficient to render target cell permissive for fusion with virions or infected cells. The spectrum of tissue tropisms exhibited by primate lentiviruses can be largely explained by differential utilization and distribution of coreceptors. This article reviews what is currently known about the selective utilization of particular coreceptors by primate lentiviruses and the nature of the envelope/coreceptor interaction, with particular reference to two important HIV-1 coreceptors, CCR-5 and CXCR-4. It has become clear that these interactions are somewhat 'plastic': Variability is evident, both in the selection of coreceptor and the way in which different viral strains interact with their cognate coreceptors. The implications of these findings both for attempts to block HIV infection with coreceptor targeted agents and for understanding HIV replication in vivo is discussed.
Structure-Guided Design of IACS-9571, a Selective High-Affinity Dual TRIM24-BRPF1 Bromodomain Inhibitor (2015)

The bromodomain containing proteins TRIM24 (tripartite motif containing protein 24) and BRPF1 (bromodomain and PHD finger containing protein 1) are involved in the epigenetic regulation of gene expression and have been implicated in human cancer. Overexpression of TRIM24 correlates with poor patient prognosis, and BRPF1 is a scaffolding protein required for the assembly of histone acetyltransferase complexes, where the gene of MOZ (monocytic leukemia zinc finger protein) was first identified as a recurrent fusion partner in leukemia patients (8p11 chromosomal rearrangements). Here, we present the structure guided development of a series of N,N-dimethylbenzimidazolone bromodomain inhibitors through the iterative use of X-ray cocrystal structures. A unique binding mode enabled the design of a potent and selective inhibitor 8i (IACS-9571) with low nanomolar affinities for TRIM24 and BRPF1 (ITC Kd = 31 nM and ITC Kd = 14 nM, respectively). With its excellent cellular potency (EC50 = 50 nM) and favorable pharmacokinetic properties (F = 29%), 8i is a high-quality chemical probe for the evaluation of TRIM24 and/or BRPF1 bromodomain function in vitro and in vivo.
Synovial interleukin‐1 receptor antagonist and interleukin‐1 balance in rheumatoid arthritis (1994)

IL-1ra production by RA ST cells is deficient relative to total production of IL-1.
Uric Acid and Endothelial Dysfunction in Essential Hypertension (2006)

Recent epidemiologic and experimental evidence suggests that serum uric acid (UA) is an independent risk factor for cardiovascular and renal diseases. However, endothelial dysfunction is an early predictor of cardiovascular events, particularly in hypertensive patients. For assessment of the association between UA and endothelial function, 217 (108 men, 109 women; aged 48.0 +/- 10.6 yr) white never-treated hypertensive patients were studied. All patients underwent the following procedures: BP measurements, laboratory tests (C-reactive protein [CRP], insulin resistance by homeostasis model assessment, serum creatinine, and UA), and endothelial function evaluated by intra-arterial infusion of acetylcholine (ACh). Serum creatinine, CRP, and maximal vasodilatory response to ACh were related to the UA (all P < 0.0001). In the multiple regression analysis, serum UA ranked as the third correlate of peak of forearm blood flow predictor, after homeostasis model assessment and CRP. The data show an independent link between UA and endothelial function, also in a statistical model that included CRP. In conclusion, the data demonstrate an inverse and significant relationship between UA and ACh-stimulated vasodilation in patients with uncomplicated, untreated essential hypertension, independent of traditional cardiovascular risk factors. Probably, the chronic inflammation that was documented in these patients may be considered the mechanistic link between serum UA and vascular damage.
Digital restoration of indium-111 and iodine-123 SPECT images with optimized Metz filters. (1986)

A number of radiopharmaceuticals of great current clinical interest for imaging are labeled with radionuclides that emit medium- to high-energy photons either as their primary radiation, or in low abundance in addition to their primary radiation. The imaging characteristics of these radionuclides result in gamma camera image quality that is inferior to that of 99mTc images. Thus, in this investigation 111In and 123I contaminated with approximately 4% 124I were chosen to test the hypothesis that a dramatic improvement in planar and SPECT images may be obtainable with digital image restoration. The count-dependent Metz filter is shown to be able to deconvolve the rapid drop at low spatial frequencies in the imaging system modulation transfer function (MTF) resulting from the acceptance of septal penetration and scatter in the camera window. Use of the Metz filter was found to result in improved spatial resolution as measured by both the full width at half maximum and full width at tenth maximum for both planar and SPECT studies. Two-dimensional, prereconstruction filtering with optimized Metz filters was also determined to improve image contrast, while decreasing the noise level for SPECT studies. A dramatic improvement in image quality was observed with the clinical application of this filter to SPECT imaging.
Task analysis and human-computer interaction: approaches, techniques, and levels of analysis (2004)

In this paper we critically review task analysis models and techniques.These approaches to task analysis are discussed in order to develop a richer picture of human activity, while analyzing their limitations, general weaknesses, and possibilities for improvement.We consider their ability to determine the appropriate set of atomic actions in a task, their effect on workers' motivational needs, their support of users' cognitive and sociocultural processes, and their effectiveness in supporting interface design.We note that the major approaches have focused on very different levels of analysis, and call for greater integration of these different levels in task analysis theory.
Structural Changes of γ-Al2O3-Supported Catalysts in Hot Liquid Water (2011)

The structural changes of γ-Al2O3, Ni/γ-Al2O3, and Pt/γ-Al2O3 catalysts under aqueous phase reforming conditions (liquid water at 200 °C and autogenic pressure) are examined over the course of 10 h. The changes are characterized by X-ray diffraction, NMR spectroscopy, N2 physisorption, pyridine adsorption followed by IR spectroscopy, and electron microscopy. It is demonstrated that γ-alumina is converted into a hydrated boehmite (AlOOH) phase with significantly decreased acidity and surface area. For metal-free γ-alumina, the transformation is completed within 10 h, whereas the presence of nickel and platinum particles significantly retards the formation of boehmite. In the beginning of the treatment, the surface area of γ-alumina increases, suggesting surface pitting and formation of small boehmite particles on the surface of γ-alumina. This process is followed by the formation of a compact crystalline boehmite phase. It is proposed that the metal particles affect the kinetics of this transformation by blocking specific surface hydroxyl groups that act as initial hydration sites. The transformation of γ-alumina into boehmite is accompanied by sintering of the supported metal particles.
Pose determination from line-to-plane correspondences: existence condition and closed-form solutions (2002)

Consideration is given to a specific pose determination problem in which the sensory features are lines and the matched reference features are planes. The lines discussed are different from edge lines of an object in that they are not the intersection of boundary faces of the object. The author describes a polynomial method that, unlike previous methods, does not require prior knowledge about the location of the object. Closed-form solutions for orthogonal, coplanar, and parallel feature configurations of critical importance in real applications are derived. Basic findings concerning the necessary and sufficient conditions under which the pose determination problem can be solved are presented.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Acoustics of Eastern and Western bells, old and new. (1989)

Bells have many modes of vibration whose modal shapes are characterized by the numbers of nodal meridians and nodal circles. In Western church bells and carillon bells, the bell is shaped so that the lowest mode frequencies are harmonically related. The subjective strike note is determined by three strong partial tones with frequencies nearly in the ratios 2: 3: 4. The pitch of a handbell, on the other hand, is determined by the frequency of the fundamental tone. In ancient Chinese bells, the vibrational modes occur in pairs, and two different tones result from striking at the sui and gu strike points. A new type of carillon bell has been developed in which the traditional minor third partial is replaced by a major third partial, thus changing the timbre of the bell.
Arabidopsis: an atlas of morphology and development (1994)

This is the first atlas to document the morphology and development of Arabidopsis thaliana, the small flowering plant which emerged during the 1980's as the primary model for research in the surging field of plant biology. Arabidopsis is the plant of choice for many studies in genetics, biochemistry, development, and radiation biology. This atlas consists of contributions from many of the world's leading Arabidopsis laboratories and is a must have volume for plant biologists. Its extensively illustrated chapters cover five principal areas: embryogenesis, vegetative growth, root growth, reproductive structures, and host-pathogen interactions.
A recombinant vaccinia virus based ELISPOT assay detects high frequencies of Pol-specific CD8 T cells in HIV-1-positive individuals (1999)

Vaccinia virus vectors used in ELISPOT assays are useful for determining the frequency and specificity of CD8 T cells for individual HIV-1 gene products. The dominance of cytolytic T lymphocytes (CTL) recognizing pol proteins suggests that this antigen should be considered in vaccine strategies.
Personalized peptide vaccination for advanced biliary tract cancer: IL-6, nutritional status and pre-existing antigen-specific immunity as possible biomarkers for patient prognosis (2011)

Considering that the prognosis of patients with advanced biliary tract cancer (BTC) remains very poor, with a median survival of less than 1 year, new therapeutic approaches need to be developed. In the present study, a phase II clinical trial of personalized peptide vaccination (PPV) was conducted in advanced BTC patients to evaluate the feasibility of this treatment and to identify potential biomarkers. A maximum of 4 human leukocyte antigen-matched peptides, which were selected based on the pre-existing host immunity prior to vaccination, were subcutaneously administered (weekly for 6 consecutive weeks and bi-weekly thereafter) to 25 advanced BTC patients without severe adverse events. Humoral and/or T cell responses specific to the vaccine antigens were substantially induced in a subset of the vaccinated patients. As shown by multivariate Cox regression analysis, lower interleukin-6 (IL-6) and higher albumin levels prior to vaccination and greater numbers of selected vaccine peptides were significantly favorable factors for overall survival [hazard ratio (HR)=1.123, 95% confidence interval (CI) 1.008-1.252, P=0.035; HR=0.158, 95% CI 0.029-0.860, P=0.033; HR=0.258, 95% CI 0.098-0.682, P=0.006; respectively]. Based on the safety profile and substantial immune responses to vaccine antigens, PPV could be a promising approach for refractory BTC, although its clinical efficacy remains to be investigated in larger-scale prospective studies. The identified biomarkers are potentially useful for selecting BTC patients who would benefit from PPV.
Novel high aspect ratio aluminum plug for logic/DRAM LSIs using polysilicon-aluminum substitute (PAS) (2002)

This paper describes a polysilicon-aluminum substitute (PAS) technique for single-crystalline aluminum plugs with aspect ratios of over 7 used for subquartermicron logic/DRAM LSIs. A via hole was filled with polysilicon by CVD, and aluminum was deposited on the planarized polysilicon plug. An aluminum plug was substituted for the polysilicon by annealing. We filled via holes having a minimum diameter of 0.175 /spl mu/m and a depth of 1.7 /spl mu/mn (an aspect ratio of about 10) with aluminum.
Unique Fatty Acids from Limnanthes douglasii Seed Oil: The C20- and C22-Monoenes2 (1960)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTUnique Fatty Acids from Limnanthes douglasii Seed Oil: The C20- and C22-Monoenes2C. R. SMITH Jr., M. O. BAGBY, T. K. MIWA, R. L. LOHMAR, and I. A. WOLFFCite this: J. Org. Chem. 1960, 25, 10, 1770–1774Publication Date (Print):October 1, 1960Publication History Published online1 May 2002Published inissue 1 October 1960https://pubs.acs.org/doi/10.1021/jo01080a026https://doi.org/10.1021/jo01080a026research-articleACS PublicationsRequest reuse permissionsArticle Views65Altmetric-Citations48LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Leukocyte trafficking in experimental autoimmune uveitis in vivo (1998)

Leukocyte trafficking from blood into tissue is a fundamental process in immune surveillance and the immune response to stimuli. Experimental autoimmune uveitis (EAU) is an animal model for posterior uveitis and is mediated by T lymphocytes and macrophages that infiltrate the posterior segment of the eye. To analyze leukocyte migration into retinal tissue during the course of EAU, labeled cells were identified in vivo by scanning laser ophthalmoscopy and in retinal flatmounts by confocal microscopy. Adhesion of blood leukocytes to retinal endothelial cells in vivo was significantly raised 48 h before the appearance of clinical disease, and this correlated with the increased expression of CD54 on retinal vessels. Mitogen-activated spleen cells and CD4+ T cells only entered into retinal tissue in animals with clinical disease and not naive recipients. The disease status of the donor animal had no effect on leukocyte trafficking. These results, which identify leukocyte-endothelial cell interactions in vivo, suggest that the activation of the retinal endothelium is a prerequisite to leukocyte adhesion and extravasation into ocular tissue during EAU.
The Sterol Carrier Protein-2 Fatty Acid Binding Site:  An NMR, Circular Dichroic, and Fluorescence Spectroscopic Determination (1997)

The interaction and orientation of fatty acids with recombinant human sterol carrier protein-2 (SCP-2) were examined by nuclear magnetic resonance (NMR), circular dichroism (CD), and fluorescence techniques. 13C-NMR spectroscopy of stearic acid and oleic acid as well as fluorescence spectroscopy of cis-parinaric acid demonstrated that SCP-2 bound naturally occurring fatty acids with near 1:1 stoichiometry. Several findings indicated that the fatty acid was oriented in the binding site with its methyl end buried in the protein interior and its carboxylate exposed at the surface: the chemical shift of bound [18-13C]-stearate; dicarboxylic/monocarboxylic acid cis-parinaric acid displacement; complete ionization of the carboxylate group of SCP-2 bound [1-13C]stearate at neutral pH; lack of electrostatic interactions between 13C-fatty acids with SCP-2 cationic residues: pH titratability of the SCP-2 bound [1-13C]stearate carboxylate group. SCP-2 did not undergo global structural changes upon ligand binding or pH decrease as indicated by the absence of significant changes in NMR and only small alterations in time resolved fluorescence parameters. However, SCP-2 did undergo secondary structural changes detected by CD in the pH range 5-6. While these changes in secondary structure did not alter the fatty acid:SCP-2 binding stoichiometry, the affinity for fatty acid was increased severalfold at lower pH. In summary, 13C-NMR, CD, and fluorescence spectroscopy provided a detailed understanding of the interaction of fatty acids with SCP-2 and further showed for the first time the orientation of the fatty acid within the binding site. The pH-induced changes in SCP-2 secondary structure and ligand binding activity may be important to the mechanism whereby this protein interacts with membrane surfaces to enhance lipid binding/transfer.