gebhart/patrepeval huggingface dataset:
Vascular complications in diabetes mellitus: the role of endothelial dysfunction (2005)

The endothelium is a complex organ with a multitude of properties essential for control of vascular functions. Dysfunction of the vascular endothelium is regarded as an important factor in the pathogenesis of diabetic micro- and macro-angiopathy. Endothelial dysfunction in Type I and II diabetes complicated by micro- or macro-albuminuria is generalized in that it affects many aspects of endothelial function and occurs not only in the kidney. The close linkage between microalbuminuria and endothelial dysfunction in diabetes is an attractive explanation for the fact that microalbuminuria is a risk marker for atherothrombosis. In Type I diabetes, endothelial dysfunction precedes and may cause diabetic microangiopathy, but it is not clear whether endothelial dysfunction is a feature of the diabetic state itself. In Type II diabetes, endothelial function is impaired from the onset of the disease and is strongly related to adverse outcomes. It is not clear whether impaired endothelial function is caused by hyperglycaemia or by other factors. Impaired endothelial function is closely associated with and may contribute to insulin resistance regardless of the presence of diabetes. Endothelial dysfunction in diabetes originates from three main sources. Hyperglycaemia and its immediate biochemical sequelae directly alter endothelial function or influence endothelial cell functioning indirectly by the synthesis of growth factors, cytokines and vasoactive agents in other cells. Finally, the components of the metabolic syndrome can impair endothelial function.
Loss of Axonal Microtubules and Neurofilaments after Stretch-Injury to Guinea Pig Optic Nerve Fibers (1997)

Axonal swellings, characterized by focal accumulations of membranous organelles at presumed sites of interrupted axonal transport, occur in diffuse axonal injury (DAI) in human, blunt head injury and in animal models of nondisruptive axonal injury. Membranous organelles are transported by fast axonal transport in association with microtubules. Although loss of microtubules has been documented at levels of injury severe enough to result in permeabilization of the axolemma to tracers such as horseradish peroxidase, there has been no detailed analysis of responses by microtubules in less severe or milder forms of nondisruptive axonal injury. To test the hypothesis that in less severe forms of axonal injury there is a rapid response by axonal microtubules that might provide an explanation for loss of fast axonal transport, we have carried out a morphometric analysis of microtubules in CNS axons after stretch-injury. There is loss of microtubules at nodes of Ranvier with nodal blebs within 15 min of injury, and in internodal axonal swellings between 2 and 4 h. There is a return to control values at nodes of Ranvier by 4 h, and at the internode by 24 h. There is no loss of microtubules at paranodes, although there is a reduction in their density in the first 2 h after injury. The greatest loss of microtubules occurs at sites of axolemma infolding. Hypothetical mechanisms that might lead to this loss resulting in focal disruption of fast axonal transport and the formation of axonal swellings are discussed.
The genetics of schizophrenia and bipolar disorder: dissecting psychosis (2005)

Much work has been done to identify susceptibility genes in schizophrenia and bipolar disorder. Several well established linkages have emerged in schizophrenia. Strongly supported regions are 6p24-22, 1q21-22, and 13q32-34, while other promising regions include 8p21-22, 6q16-25, 22q11-12, 5q21-q33, 10p15-p11, and 1q42. Genomic regions of interest in bipolar disorder include 6q16-q22, 12q23-q24, and regions of 9p22-p21, 10q21-q22, 14q24-q32, 13q32-q34, 22q11-q22, and chromosome 18. Recently, specific genes or loci have been implicated in both disorders and, crucially, replicated. Current evidence supports NRG1, DTNBP1, DISC1, DAOA(G72), DAO, and RGS4 as schizophrenia susceptibility loci. For bipolar disorder the strongest evidence supports DAOA(G72) and BDNF. Increasing evidence suggests an overlap in genetic susceptibility across the traditional classification systems that dichotomised psychotic disorders into schizophrenia or bipolar disorder, most notably with association findings at DAOA(G72), DISC1, and NRG1. Future identification of psychosis susceptibility genes will have a major impact on our understanding of disease pathophysiology and will lead to changes in classification and the clinical practice of psychiatry.
Effect of different stress on nerve or immunal derived calcitonin gene related peptide release in the rat (1999)

Objective: To compare the calcitonin gene related peptide (CGRP) contents of different tissues following psychogenic (restraint) stress and biological (sepsis) stress. Methods: Rat septic model was made by cecal ligation and puncture with a 18 gauge needle for 10 and 20 hours. Rat restraint stress was made by restricting movement of the rat for 20 hours. The CGRP like immunoactivity in six kinds of tissue/cells was determined by CGRP specific RIA. Results: The data showed that the CGRP contents in dorsal root ganglia, superior mesenteric arteria and duodena were just enhanced significantly in early sepsis, but CGRP was increased in thymocytes and sustained at high levels in tracheas in late sepsis, and it showed a tendency to elevate in atria. In contrast, gastrointestinal and superior mesenteric arterial CGRP content was altered only in the restraint stress. Conclusion: Different stresses induce synthesis and release of nerve and immuno derived CGRP with different characteristics. Psychogenic stress might not directly stimulate CGRP release which is more sensitive to infective, ischemic and traumatic stimuli.
Giant-Stroke, Superelastic Carbon Nanotube Aerogel Muscles (2009)

Improved electrically powered artificial muscles are needed for generating force, moving objects, and accomplishing work. Carbon nanotube aerogel sheets are the sole component of new artificial muscles that provide giant elongations and elongation rates of 220% and (3.7 x 10(4))% per second, respectively, at operating temperatures from 80 to 1900 kelvin. These solid-state-fabricated sheets are enthalpic rubbers having gaslike density and specific strength in one direction higher than those of steel plate. Actuation decreases nanotube aerogel density and can be permanently frozen for such device applications as transparent electrodes. Poisson's ratios reach 15, a factor of 30 higher than for conventional rubbers. These giant Poisson's ratios explain the observed opposite sign of width and length actuation and result in rare properties: negative linear compressibility and stretch densification.
Alkanethiolate Gold Cluster Molecules with Core Diameters from 1.5 to 5.2 nm:  Core and Monolayer Properties as a Function of Core Size (1998)

The mean size of the gold (Au) core in the synthesis of dodecanethiolate-stabilized Au cluster compounds can be finely adjusted by choice of the Au:dodecanethiolate ratio and the temperature and rate at which the reduction is conducted. The Au clusters have been examined with a large number of independent analytical tools, producing a remarkably consistent picture of these materials. Average cluster and core dimensions, as ascertained by 1H NMR line broadening, high-resolution transmission electron microscopy, small-angle X-ray scattering, and thermogravimetric analysis, vary between diameters of 1.5 and 5.2 nm (∼110−4800 Au atoms/core). The electronic properties of the Au core were examined by UV/vis and X-ray photoelectron spectroscopy; the core appears to remain largely metallic in nature even at the smallest core sizes examined. The alkanethiolate monolayer stabilizing the Au core ranges with core size from ∼53 to nearly 520 ligands/core, and was probed by Fourier transform infrared spectroscopy, differential scanning calorimetry, contact-angle measurements, and thermal desorption mass spectrometry. The dodecanethiolate monolayer on small and large core clusters exhibits discernable differences; the line dividing “3-dimensional” monolayers and those resembling self-assembled monolayers on flat Au (2-dimensional monolayers) occurs at clusters with ∼4.4 nm core diameters.
Human insulin production from a novel mini-proinsulin which has high receptor-binding activity (1998)

To increase the folding efficiency of the insulin precursor and the production yield of insulin, we have designed a mini-proinsulin (M2PI) having the central C-peptide region replaced with a sequence forming a reverse turn. The mini-proinsulin was fused at the N-terminus to a 21-residue fusion partner containing a His10 tag for affinity purification. The gene for the fusion protein was inserted downstream of the T7 promoter of the expression plasmid pET-3a, and the fusion proteins were produced as inclusion bodies in the Escherichia coli cytoplasm at levels up to 25% of the total cell protein. The protein was sulphonated, cleaved by CNBr and the M2PI mini-proinsulin was purified using ion-exchange chromatography. The refolding yield of M2PI was 20-40% better than that of proinsulin studied at the same molar concentrations, indicating that the short turn-forming sequence is more effective in the refolding process than the much longer C-peptide. Native human insulin was successfully generated by subsequent enzymic conversion of mini-proinsulin. The mini-proinsulin exhibited high receptor-binding activity, about 50% as potent as insulin, suggesting that this single-chained mini-proinsulin may provide a foundation in understanding the receptor-bound structure of insulin as well as the role of C-peptide in the folding and activity of proinsulin.
Nup358, a Cytoplasmically Exposed Nucleoporin with Peptide Repeats, Ran-GTP Binding Sites, Zinc Fingers, a Cyclophilin A Homologous Domain, and a Leucine-rich Region (1995)

The Ras-related nuclear protein, Ran, has been implicated in nuclear transport. By screening a HeLa cell lambda expression library with Ran-GTP and sequencing overlapping cDNA clones, we have obtained the derived primary structure of a protein with a calculated molecular mass of 358 kDa. Using antibodies raised against an expressed segment of this protein, we obtained punctate nuclear surface staining by immunofluorescence microscopy that is characteristic for nucleoporins. Electron microscopy of immunogold-decorated rat liver nuclear envelopes sublocalized the 358-kDa protein at (or near) the tip of the cytoplasmic fibers of the nuclear pore complex (NPC). In agreement with current convention, this protein was therefore termed Nup358 (for nucleoporin of 358 kDa). Nup358 contains a leucine-rich region, four potential Ran binding sites (i.e. Ran binding protein 1 homologous domains) flanked by nucleoporin-characteristic FXFG or FG repeats, eight zinc finger motifs, and a C-terminal cyclophilin A homologous domain. Consistent with the location of Nup358 at the cytoplasmic fibers of the NPC, we found decoration with Ran-gold at only the cytoplasmic side of the NPC. Thus, Nup358 is the first nucleoporin shown to contain binding sites for two of three soluble nuclear transport factors so far isolated, namely karyopherin and Ran-GTP.
SELAGINELLA GYPSOPHILA (SELAGINELLACEAE), YET ANOTHER NEW EDAPHIC ENDEMIC FROM NORTHERN MEXICO (1984)

(Uploaded by Plazi from the Biodiversity Heritage Library) No abstract provided.
Selective and regulated RF heating of stent toward endohyperthermia treatment of in-stent restenosis (2015)

This thesis presents a novel active stent system with a selective radio frequency (RF)heating and temperature regulation capabilities. Such system is targeted at the application to endohyperthermia treatment for in-stent restenosis problems, providing a cheap and non-invasive long-term solution to the blood vessel blockage caused by a growth of scar tissue across the stent structure after implantation. The research work consists of two major portions. Firstly, a novel active stent device with ability of selective RF heating has been custom designed and explored. The device is formed by integrating a stainless-steel based stent with a flexible capacitor strip, which serves as a frequency-selective wireless heater controlled using a tuned RF electromagnetic field applied externally. The proof-of-concept prototype device has been developed based on micro-electromechanical systems (MEMS) fabrication processes; its electrical and thermal characteristics are studied thoroughly. The finalized device is tested and evaluated within an artificial artery for validating its potential feasibility of wireless stent hyperthermia.Secondly, a MEMS-based, thermally sensitive circuit breaker chip has been designed and fabricated for the active stent temperature regulation. The temperature of an active stent device can be managed within a certain range after integrated with the chip, offering the controllability of RF heating of the device. Customized design and packaging methods are used in the chip fabrication; the chip-stent integration technique is also explored. The finalized device is evaluated with in-vitro tests, showing its temporal capability and wireless reliability. The experiment result verifies device working principles and suggests a direction of future research on non-invasive endohyperthermia treatments for long-term restenosis management.
Preparation and Evaluation of Tablets Rapidly Disintegrating in Saliva Containing Bitter-Taste-Masked Granules by the Compression Method. (1999)

The aim of this study was to prepare, using taste-masked granules, tablets which can rapidly disintegrate in saliva (rapidly disintegrating tablet), of drugs with bitter taste (pirenzepine HCl or oxybutynin HCl). The taste-masked granules were prepared using aminoalkyl methacrylate copolymers (Eudragit E-100) by the extrusion method. None of the drugs dissolved from the granules (% of dissolved, < 5%) even at 480 min at pH 6.8 in the dissolution test. However, the drugs dissolved rapidly in the medium at pH 1.2 in the dissolution test. Rapidly disintegrating tablets were prepared using the prepared taste-masked granules, and a mixture of excipients consisting of crystalline cellulose (Avicel PH-102) and low-substituted hydroxypropylcellulose (L-HPC, LH-11). The granules and excipients were mixed well (mixing ratio by weight, crystalline cellulose: L-HPC = 8:2) with 1% magnesium stearate, and subsequently compressed at 500-1500 kgf in a single-punch tableting machine. The prepared tablets (compressed at 500 kgf) containing the taste-masked granules have sufficient strength (the crushing strength: oxybutynin tablet, 3.5 kg; pirenzepine tablet, 2.2 kg), and a rapid disintegration time (within 20 s) was observed in the saliva of healthy volunteers. None of the volunteers felt any bitter taste after the disintegration of the tablet which contained the taste-masked granules. We confirmed that the rapidly disintegrating tablets can be prepared using these taste-masked granules and excipients which are commonly used in tablet preparation.
Sedimentation of Clayey Slurry (1990)

In this paper, the sedimentation of clayey slurry is studied using Kynch's theory. This theory is attractive as the only property needed, the permeability, can be determined from the surface settlement curve. The assumption in Kynch's theory that the settling velocity is a function of the concentration alone is investigated first and found to depend also on the initial condition; an indication of the effect of flocculation. The theory is then reformulated and it is shown that the permeability‐versus‐void‐ratio relationship of the slurry can be determined from its surface settlement versus time curve. Modifications that still maintained the simplicity of Kynch's theory are then introduced to account for the dependence on an initial condition that reflects the changes in the soil fabric due to flocculation. A number of experiments are then conducted and the measured surface settlement and density are compared with the predicted values. The good agreement confirms the validity of the approach adopted.
Survey of radioactive agents for in vitro labeling of phagocytic leukocytes. II. Particles. (1976)

When various radioactive particles are incubated and tumbled in concentrated suspensions of blood phagocytes at body temperature for 1 hr, they bind to the phagocytic cells with a labeling yield of 30-40%. In vitro experiments show that, for some radioactive colloids, a sizeable fraction of the total cellular binding results from nonspecific surface adsorption to other cells and from reversible surface adsorption to phagocytes without engulfment. No completely satisfactory in vitro methods have been found for separating leukocytes with completely engulfed particles from those with surface-adherent particles; nonetheless, surface adherence can be partially reversed by 20% acid citrate dextrose (ACD) solution or by an excess of nonradioactive colloid. Gelatinization of colloidal particles tends to increase their binding to phagocytic cells but also increases the degree of nonspecific adherence to other cells. Technetium-99m-millimicrospheres, 0.5-2 mum in diameter, are optimal in size for phagocytosis by neutrophils, and their non-specific adherence to other cells is minimal. Because of the microspheres' poor stability in aqueous suspension, however, it is technically difficult to separate free from phagocytosed radioactivity after cell incubation. The highly stable small-particle colloids (less than 0.1 mum), such as 198Au-colloid or 111In-colloid without iron carrier, are phagocytosed poorly or not at all by neutrophils, although they are engulfed by mononuclear cells.
Ku-band SATCOM On-the Move Network (2006)

Military deployments over the last 10 years have demonstrated deficiencies in the ability of the existing communications infrastructure to meet the warfighter's operational needs. Line-of-sight communications cannot easily support widely dispersed forces or forces in mountainous terrain. Quickly moving forces make traditional beyond-line-of-sight methods such as satellite-based on-the-pause cumbersome at best. Furthermore the move toward network-centric applications has made broadband network connectivity a necessity. The on-the-move (OTM) communications network described in this paper meets these operational needs using Ku-band satellites and is more scaleable than L-band approaches such as INMARSAT. In the paper we describe how the network is better suited to OTM operations than other architectures; in particular allowing smaller apertures than otherwise possible and better accommodating blockage as experienced in the land-mobile environment.
Survey of microbial oxygenases: trichloroethylene degradation by propane-oxidizing bacteria (1989)

Microorganisms that biosynthesize broad-specificity oxygenases to initiate metabolism of linear and branched-chain alkanes, nitroalkanes, cyclic ketones, alkenoic acids, and chromenes were surveyed for the ability to biodegrade trichloroethylene (TCE). The results indicated that TCE oxidation is not a common property of broad-specificity microbial oxygenases. Bacteria that contained nitropropane dioxygenase, cyclohexanone monooxygenase, cytochrome P-450 monooxygenases, 4-methoxybenzoate monooxygenase, and hexane monooxygenase did not degrade TCE. However, one new unique class of microorganisms removed TCE from incubation mixtures. Five Mycobacterium strains that were grown on propane as the sole source of carbon and energy degraded TCE. Mycobacterium vaccae JOB5 degraded TCE more rapidly and to a greater extent than the four other propane-oxidizing bacteria. At a starting concentration of 20 microM, it removed up to 99% of the TCE in 24 h. M. vaccae JOB5 also biodegraded 1,1-dichloroethylene, trans-1,2-dichloroethylene, cis-1,2-dichloroethylene, and vinyl chloride.
Genetic Codes with No Dedicated Stop Codon: Context-Dependent Translation Termination (2016)

distinguish stop codons as such in ambiguous genetic codes d The ability to resolve genetic code ambiguity may enable genetic code evolution
Effect of reciprocal complementation of two defective human immunodeficiency virus type 1 (HIV-1) molecular clones on HIV-1 cell tropism and virulence (1992)

Human immunodeficiency virus type 1 (HIV-1) displays both interstrain and intrastrain genetic variability. Virus populations with extensive microheterogeneity have been defined as swarms or quasispecies. Many of the genomes within HIV-1 swarms appear to be defective in one or more genes required for viral replication. It is unclear to what extent defective viruses play a role in the process of HIV-1 infection or in the pathogenesis of AIDS. We have isolated two biologically active HIV-1 clones: LW 12.3, which contains defects in the vif and vpr genes, and MN ST.1, which has a defect in the vpu gene. LW 12.3 is unable to replicate in peripheral blood mononuclear cells (PBMC). The growth of MN-ST.1 in SupT1 cells is marked by a 3-week lag in extracellular virus production and by the presence of unusually abundant viral buds. We demonstrate here that coinfection of PBMC with these two partially defective HIV-1 clones extends the cellular host range of LW 12.3, significantly increases the replication rate of both viral genomes, and eliminates the delay in production observed with the vpu-defective MN ST.1. When the lesions in vpr and vif of LW 12.3 are repaired, the resultant virus grows normally in PBMC. This is also the case when only vif is repaired, indicating that complementation of LW 12.3 in PBMC by MN ST.1 is mediated by vif in trans. The reciprocal complementation results in a dramatic increase of HIV-1 virulence. This two-component model represents a simplified version of the in vivo situation and illustrates one way in which interaction of defective viruses could increase the spread of infection and progression of disease.
Differential Requirements for DNA Replication in the Activation of Mitotic Checkpoints in Saccharomyces cerevisiae (1997)

Checkpoints prevent inaccurate chromosome segregation by inhibiting cell division when errors in mitotic processes are encountered. We used a temperature-sensitive mutation, dbf4, to examine the requirement for DNA replication in establishing mitotic checkpoint arrest. We used gamma-irradiation to induce DNA damage and hydroxyurea to limit deoxyribonucleotides in cells deprived of DBF4 function to investigate the requirement for DNA replication in DNA-responsive checkpoints. In the absence of DNA replication, mitosis was not inhibited by these treatments, which normally activate the DNA damage and DNA replication checkpoints. Our results support a model that indicates that the assembly of replication structures is critical for cells to respond to defects in DNA metabolism. We show that activating the spindle checkpoint with nocodazole does not require prior progression through S phase but does require a stable kinetochore.
The Functional ccpA Gene Is Required for Carbon Catabolite Repression in Lactobacillus plantarum (2001)

We report the characterization of the ccpA gene of Lactobacillus plantarum, coding for catabolite control protein A. The gene is linked to the pepQ gene, encoding a proline peptidase, in the order ccpA-pepQ, with the two genes transcribed in tandem from the same strand as distinct transcriptional units. Two ccpA transcription start sites corresponding to two functional promoters were found, expression from the upstream promoter being autogenously regulated through a catabolite-responsive element (cre) sequence overlapping the upstream +1 site. During growth on ribose, the upstream promoter showed maximal expression, while growth on glucose led to transcription from the downstream promoter. In a ccpA mutant strain, the gene was transcribed mainly from the upstream promoter in both repressing and non repressing conditions. Expression of two enzyme activities, beta-glucosidase and beta-galactosidase, was relieved from carbon catabolite repression in the ccpA mutant strain. In vivo footprinting analysis of the catabolite-controlled bglH gene regulatory region in the ccpA mutant strain showed loss of protection of the cre under repressing conditions.