gebhart/patrepeval huggingface dataset:
Management elements metadata extraction method for complex product manufacturing (2013)

Data integration between various systems of complex product manufacturing enterprises and the resource management issues are the focus of the attention of the management sectors. To solve the problem, the ship manufacturing, for example, this paper detailed analyzing the characteristics of its data storage and description, and according to the MOF element model mechanism, using rule-based routes to extract management elements metadata that can standardize swap data and carry management elements information. We also combined static data and dynamic management needs, under the combination of subjective and objective to semantic similarity algorithm of computing the semantic similarity of two concepts, given the ideas and detailed extraction method of management elements metadata. The metadata not only effectively carried data semantic and structural information, laid a solid foundation for the integration of heterogeneous data.
Imaging beyond the proteome (2012)

Imaging technologies developed in the early 20th century achieved contrast solely by relying on macroscopic and morphological differences between the tissues of interest and the surrounding tissues. Since then, there has been a movement toward imaging at the cellular and molecular level in order to visualize biological processes. This rapidly growing field is known as molecular imaging. In the last decade, many methodologies for imaging proteins have emerged. However, most of these approaches cannot be extended to imaging beyond the proteome. Here, we highlight some of the recently developed technologies that enable imaging of non-proteinaceous molecules in the cell: lipids, signalling molecules, inorganic ions, glycans, nucleic acids, small-molecule metabolites, and protein post-translational modifications such as phosphorylation and methylation.
Methods Favoring Homology-Directed Repair Choice in Response to CRISPR/Cas9 Induced-Double Strand Breaks (2020)

Precise gene editing is-or will soon be-in clinical use for several diseases, and more applications are under development. The programmable nuclease Cas9, directed by a single-guide RNA (sgRNA), can introduce double-strand breaks (DSBs) in target sites of genomic DNA, which constitutes the initial step of gene editing using this novel technology. In mammals, two pathways dominate the repair of the DSBs-nonhomologous end joining (NHEJ) and homology-directed repair (HDR)-and the outcome of gene editing mainly depends on the choice between these two repair pathways. Although HDR is attractive for its high fidelity, the choice of repair pathway is biased in a biological context. Mammalian cells preferentially employ NHEJ over HDR through several mechanisms: NHEJ is active throughout the cell cycle, whereas HDR is restricted to S/G2 phases; NHEJ is faster than HDR; and NHEJ suppresses the HDR process. This suggests that definitive control of outcome of the programmed DNA lesioning could be achieved through manipulating the choice of cellular repair pathway. In this review, we summarize the DSB repair pathways, the mechanisms involved in choice selection based on DNA resection, and make progress in the research investigating strategies that favor Cas9-mediated HDR based on the manipulation of repair pathway choice to increase the frequency of HDR in mammalian cells. The remaining problems in improving HDR efficiency are also discussed. This review should facilitate the development of CRISPR/Cas9 technology to achieve more precise gene editing.
Thymocyte depletion in Trypanosoma cruzi infection is mediated by trans -sialidase-induced apoptosis on nurse cells complex (2002)

Trypanosoma cruzi, the causative agent of Chagas' disease, induces transient thymic aplasia early after infection-a phenomenon that still lacks a molecular explanation. The parasite sheds an enzyme known as trans-sialidase (TS), which is able to direct transfer-sialyl residues among macromolecules. Because cell-surface sialylation is known to play a central role in the immune system, we tested whether the bloodstream-borne TS is responsible for the thymic alterations recorded during infection. We found that recombinant TS administered to naive mice was able to induce cell-count reduction mediated by apoptosis, mimicking cell subsets distribution and histologic findings observed during the acute phase of the infection. Thymocytes taken after TS treatment showed low response to Con A, although full ability to respond to IL-2 or IL-2 plus Con A was conserved, which resembles findings from infected animals. Alterations were found to revert several days after TS treatment. The administration of TS-neutralizing Abs to T. cruzi-infected mice prevented thymus alterations. Results indicate that the primary target for the TS-induced apoptosis is the so-called "nurse cell complex". Therefore, we report here supporting evidence that TS is the virulence factor from T. cruzi responsible for the thymic alterations via apoptosis induction on the nurse cell complex, and that TS-neutralizing Abs elicitation during infection is associated with the reversion to thymic normal parameters.
Purification and characterization of the 30,000 dalton native antigen of Mycobacterium tuberculosis and characterization of six monoclonal antibodies reactive with a major epitope of this antigen. (1991)

The 30,000 dalton native antigen of Mycobacterium tuberculosis is a major constituent of this organism and is secreted into culture medium. We purified this antigen by ammonium sulfate precipitation, ion-exchange chromatography, and reverse-phase high-performance liquid chromatography to yield a single 29 to 30 kd component. The first 20 N-terminal amino acid sequence was determined and found to be identical to that reported for M. bovis alpha-antigen. Immunoelectrophoresis studies demonstrated the purified 30,000 dalton antigen to be immunologically identical with antigen 6 and antigen 85B. The 30,000 dalton native antigen was a potent skin test antigen in sensitized guinea pigs. Six immunoglobulin G1 murine monoclonal antibodies against the 30,000 dalton antigen were generated. By enzyme-linked immunosorbent assay and western immunoblotting, all six monoclonal antibodies reacted with the 30,000 dalton antigen, perhaps with the same epitope. When used with culture filtrates of other mycobacteria, the monoclonal antibodies demonstrated reactivity with M. gordonae and M. kansasii and to a lesser extent with M. avium and M. scrofulaceum.
ADAPTIVE RELATIONSHIP BETWEEN LEAF WATER REPELLENCY, STOMATAL DISTRIBUTION, AND GAS EXCHANGE (1989)

Although numerous studies have considered the functional significance of the terrestrial plant leaf surface, the importance of water repulsion for enhancing photosynthetic carbon uptake (CO 2 ) has not been recognized and appears to involve an array of structural adaptations. The large majority of species tested had leaf surfaces that repelled water to such an extent that varying degrees of water‐bead formation occurred. On more wettable leaves, the formation of a water surface film (dewfall) severely curtailed photosynthetic CO, uptake in the field, most likely because CO 2 diffuses 10 4 times slower in water than air. Water bead formation not only enabled maintenance of high photosynthetic rates but also increased water use efficiency several fold. In 3 of 5 species tested in the field, water bead formation after artificial wetting resulted in greater stomatal opening and increases in photosynthesis of up to 34%. The most nonwettable leaf surface on a given leaf also had all or the majority of the leaf's stomata in 50 of the 57 species tested, indicating a potentially strong adaptive relationship between leaf surface wettability, stomatal occurrence, and photosynthetic performance.
A missense mutation of the Na + channel α II subunit gene Na v 1.2 in a patient with febrile and afebrile seizures causes channel dysfunction (2001)

Generalized epilepsy with febrile seizures plus (GEFS+), a clinical subset of febrile seizures (FS), is characterized by frequent episodes beyond 6 years of age (FS+) and various types of subsequent epilepsy. Mutations in beta1 and alpha(I)-subunit genes of voltage-gated Na(+) channels have been associated with GEFS+1 and 2, respectively. Here, we report a mutation resulting in an amino acid exchange (R188W) [corrected] in the gene encoding the alpha-subunit of neuronal voltage-gated Na(+) channel type II (Na(v)1.2) in a patient with FS associated with afebrile seizures. The mutation R188W [corrected] occurring on Arg(187), a highly conserved residue among voltage-gated Na(+) channels, was not found in 224 alleles of unaffected individuals. Whole-cell patch clamp recordings on human embryonic kidney (HEK) cells expressing a rat wild-type (rNa(v)1.2) and the corresponding mutant channels showed that the mutant channel inactivated more slowly than wild-type whereas the Na(+) channel conductance was not affected. Prolonged residence in the open state of the R188W [corrected] mutant channel may augment Na(+) influx and thereby underlie the neuronal hyperexcitability that induces seizure activity. Even though a small pedigree could not show clear cosegregation with the disease phenotype, these findings strongly suggest the involvement of Na(v)1.2 in a human disease and propose the R188W [corrected] mutation as the genetic defect responsible for febrile seizures associated with afebrile seizures.
Subclavian Stents and Stent-Grafts: Cause for Concern? (1999)

The subclavian vessels are prone to flexion during movement, and the vessels may be compressed by external structures, including the clavicle and first rib. Stents that have not been designed to withstand these forces may be damaged.
Reduction of blood loss by infusion of human platelets in a rabbit kidney injury model (1999)

This is the first report describing a kidney injury model developed to assess the efficacy of fresh and activated human platelets in reducing blood loss in thrombocytopenic rabbits. This model could monitor the efficacy of human platelets prepared by various preservation protocols in suppressing bleeding in rabbits.
计算机辅助教学(CAI)能促进创造性思维 (1985)

教育工作者研究创造力的测量已经有二十多年的历史了,虽然构成创造力的多因素性质使这种测量产生困难。但研究的趋向已集中于作为创造性行为的基础的一些共同因素(参阅戴维斯和奥萨利文,1980;克莱恩,1982)。人们提出独到的思想组合和形成新知识的认识能力,以及导向创造
Brivaracetam: a rational drug discovery success story (2008)

Levetiracetam, the alpha-ethyl analogue of the nootropic piracetam, is a widely used antiepileptic drug (AED) that provides protection against partial seizures and is also effective in the treatment of primary generalized seizure syndromes including juvenile myoclonic epilepsy. Levetiracetam was discovered in 1992 through screening in audiogenic seizure susceptible mice and, 3 years later, was reported to exhibit saturable, stereospecific binding in brain to a approximately 90 kDa protein, later identified as the ubiquitous synaptic vesicle glycoprotein SV2A. A large-scale screening effort to optimize binding affinity identified the 4-n-propyl analogue, brivaracetam, as having greater potency and a broadened spectrum of activity in animal seizure models. Recent phase II clinical trials demonstrating that brivaracetam is efficacious and well tolerated in the treatment of partial onset seizures have validated the strategy of the discovery programme. Brivaracetam is among the first clinically effective AEDs to be discovered by optimization of pharmacodynamic activity at a molecular target.
The role of PKCα and RLIP76 in transport‐mediated doxorubicin‐resistance in lung cancer (2005)

In deletion mutant analyses of potential phosphorylation sites in RLIP76, we identified T297 and S509 as targets for phosphorylation by PKCalpha. Phosphorylation at T297 increased doxorubicin (DOX)-transport activity approximately 2-fold for RLIP76 purified from recombinant source, or from three small (H69, H1417, H1618) and three non-small cell, one each derived from H226 (squamous), H358 (bronchio alveolar), and H1395 (adenocarcinoma) lung cancer cell lines. T297 phosphorylation conferred sensitivity to tryptic digestion at R293. The specific activity for DOX-transport by RLIP76 purified from non-small cell, which was primarily in the phosphorylated form, was approximately twice that in small cell lung cancer cell lines. These finding offer a novel explanation for the observed intrinsic differences in sensitivity to DOX between non-small cell and small cell lung cancer cell lines.
Tissue-specific and androgen-regulated expression of human prostate-specific transglutaminase (1996)

Transglutaminases (TGases) are calcium-dependent enzymes catalysing the post-translational cross-linking of proteins. In the prostate at least two TGases are present, the ubiquitously expressed tissue-type TGase (TGC), and a prostate-restricted TGase (TGP). This paper deals with the molecular cloning and characterization of the cDNA encoding the human prostate TGase (hTGP). For this purpose we have screened a human prostate cDNA library with a probe from the active-site region of TGC. The largest isolated cDNA contained an open reading frame encoding a protein of 684 amino acids with a predicted molecular mass of 77 kDa as confirmed by in vitro transcription-translation and subsequent SDS/PAGE. The hTGP gene was tissue-specifically expressed in the prostate, yielding an mRNA of approx. 3.5 kb. Furthermore, a 3-fold androgen-induced upregulation of hTGP mRNA expression has been demonstrated in the recently developed human prostate cancer cell line, PC346C. Other well established human prostate cancer cell lines, LNCaP and PC-3, showed no detectable hTGP mRNA expression on a Northern bolt. The gene coding for prostate TGase was assigned to chromosome 3.
Distribution of kinase and deaminase of 1-beta-D-arabinofuranosylcytosine in tissues of man and mouse. (1973)

Summary 1-β-d-Arabinofuranosylcytosine (ara-C), an important antitumor agent, must be converted to the nucleotide by deoxycytidine kinase (K) in order to be biologically active. It is inactivated by ara-C deaminase (D) to 1-β-d-arabinofuranosyluracil. The enzymes are widely distributed in normal and neoplastic tissues of both man and mouse. Low K and high D activities, thus low ratios of K to D, were demonstrated in chronic myelogenous leukemic cells and human normal peripheral white cells and marrow. Acute myelogenous leukemic and chronic lymphocytic leukemic cells either from peripherals or marrows had relatively high K/D ratios. A high K was demonstrated in spleens of man and mouse. The human spleen and liver had high D, whereas mouse kidney had high D. On the basis of equal body weight, human tissues contained more D than did mouse tissues. This corresponds well with the faster catabolic rate of ara-C in man than in mouse in vivo. In mice, the i.p. administration of a D inhibitor, tetrahydrouridine (100 mg/kg), decreased the amount of 1-β-d-arabinofuranosyluracil and proportionally increased the amount of ara-C excreted in urine. In view of the higher D in man than in mouse, tetrahydrouridine in combination with ara-C may be of more value clinically than ara-C alone.
Si/SiGe high-speed field-effect transistors (2002)

We review the current status of Si/SiGe n- and p-type MODFETs with an emphasis on their microwave performance. A comparison with state-of-the-art Si technology is given, and the potential use of Si/SiGe devices in complementary logic is pointed out.
Wresting the muscle from mussel beards: research and applications. (1995)

Marine and zebra mussels secrete byssal beards to attach themselves opportunistically to hard surfaces in their environment. By doing this, they naturally earn a reputation as fouling pests. The protein precursors of byssus in mussels are being investigated in the hope not only of discovering specific measures against these marine foulers, but also to gain some insights into the technically challenging task of engineering adhesive bonds underwater. Although byssal proteins are all part of the bearded glue that bonds them to a surface, they can be subdivided into three types depending on the function that they serve in byssal threads: (1) fibrous proteins form the load-bearing cables in the core of the threads, (2) cuticular proteins form a protective coat around the cables, and (3) adhesive proteins connect the cables to a foreign surface. A flaw in any one of these will undermine a mussel's ability to attach. The fibrous proteins can be collagenous, silk-like, elastic, or any combination of these. Covering these are the cuticular proteins, which are distinguished by their surface coupling properties, tandemly repeated primary sequence, and their high content of lysine and the exotic amino acid 3,4-dihydroxyphenyl-L-alanine (DOPA). The adhesive proteins are of low molecular weight, contain DOPA, and assemble to form microcellular solids (foams). Several of these proteins are already attracting biotechnological attention as cell and tissue attachment factors, anticorrosives, and metal-sequestering reagents.
Weight loss in Huntington disease increases with higher CAG repeat number (2008)

<b>Objective: </b> Huntington disease (HD) is a hereditary neurodegenerative disorder caused by an expanded number of CAG repeats in the <i>huntingtin</i> gene. A hallmark of HD is unintended weight loss, the cause of which is unknown. In order to elucidate the underlying mechanisms of weight loss in HD, we studied its relation to other disease characteristics including motor, cognitive, and behavioral disturbances and CAG repeat number. <b>Methods: </b> In 517 patients with early stage HD, we applied mixed-effects model analyses to correlate weight changes over 3 years to CAG repeat number and various components of the Unified Huntington’s Disease Rating Scale (UHDRS). We also assessed the relation between CAG repeat number and body weight and caloric intake in the R6/2 mouse model of HD. <b>Results: </b> In patients with HD, mean body mass index decreased with −0.15 units per year (<i>p</i> &lt; 0.001). However, no single UHDRS component, including motor, cognitive, and behavioral scores, was independently associated with the rate of weight loss. Patients with HD with a higher CAG repeat number had a faster rate of weight loss. Similarly, R6/2 mice with a larger CAG repeat length had a lower body weight, whereas caloric intake increased with larger CAG repeat length. <b>Conclusions: </b> Weight loss in Huntington disease (HD) is directly linked to CAG repeat length and is likely to result from a hypermetabolic state. Other signs and symptoms of HD are unlikely to contribute to weight loss in early disease stages. Elucidation of the responsible mechanisms could lead to effective energy-based therapeutics.
Utility of cytokeratin 20 in identifying the origin of metastatic carcinomas in effusions (1995)

Using a commercially available monoclonal antibody (Ks20.1) and the avidin-biotin peroxidase method on cytospins and cell blocks, we analyzed cytokeratin (CK) 20 expression in 169 serous effusions. Cytoplasmic staining was observed in 44/151 malignant fluids. Colon, gastric, and pancreatic adenocarcinomas and mucinous ovarian tumors were most frequently positive. Single cases of transitional-cell and squamous cell carcinomas were reactive as well. Lung and breast cancers were mostly negative. Nonmucinous ovarian tumors were invariably unlabeled as were mesotheliomas and normal mesothelial cells. The study shows that CK 20 is valuable in distinguishing tumor cell origin in effusions. In particular, it identifies a set of carcinomas with the majority arising from the gastrointestinal tract, and represents a highly characteristic marker for colorectal cancer.
Genetic manipulation of the pathway for diacetyl metabolism in Lactococcus lactis (1996)

Diacetyl is an important food flavor compound produced by certain strains of citrate-metabolizing lactic acid bacteria. Citrate is converted to pyruvate, from which diacetyl is produced via intermediate alpha-acetolactate. This paper reports the cloning and analysis of the gene (aldB) encoding alpha-acetolactate decarboxylase from Lactococcus lactis MG1363. Deletion of the MG1363 chromosomal aldB gene was achieved by double crossover homologous recombination. The mutant strain was found to produce diacetyl; alpha-acetolactate decarboxylase activity was eliminated. Overexpression of the cloned ilvBN genes (encoding an alpha-acetolactate synthase) in the aldB deletion strain produced even higher levels of alpha-acetolactate, acetoin, and diacetyl.
Film Thickness Dependent Thermal Expansion in Ultrathin Poly(methyl methacrylate) Films on Silicon (1995)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTFilm Thickness Dependent Thermal Expansion in Ultrathin Poly(methyl methacrylate) Films on SiliconWen-li Wu, John H. van Zanten, and William J. OrtsCite this: Macromolecules 1995, 28, 3, 771–774Publication Date (Print):January 1, 1995Publication History Published online1 May 2002Published inissue 1 January 1995https://pubs.acs.org/doi/10.1021/ma00107a013https://doi.org/10.1021/ma00107a013research-articleACS PublicationsRequest reuse permissionsArticle Views838Altmetric-Citations98LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis (2010)

The Beta-value has a more intuitive biological interpretation, but the M-value is more statistically valid for the differential analysis of methylation levels. Therefore, we recommend using the M-value method for conducting differential methylation analysis and including the Beta-value statistics when reporting the results to investigators.
Mast Cell Secretion (1984)

Mast cell secretion is closely associated with extrusion of granules from the cell, and results in rapid release of both amines and heparin. Amines may also be released from intracellular granules communicating with the extracellular environment through channels formed by membrane fusions. We have recently reported the use of the fluorescent, cationic dye berberine as a vital stain marking amine-releasing granules located within the domains of the cell. The present report concerns early membrane events and the fate of such granules after termination of the secretory process. Purified mast cells were stimulated to a moderate secretory response by a low concentration of polymyxin B. The cells were then kept in a medium without the secretagogue. The fluorescence intensity of individual cells after vital berberine staining (reflecting the number of intracellular granules in contact with the extracellular environment) decreased rapidly after terminated mast cell secretion. The heparin content (reflecting the total number of intracellular granules) and the histamine content of the cells, both reduced by the secretory process, remained constant over a period of 1 h after terminated mast cell secretion. These findings suggest that mast cell membranes are rapidly restored after secretion, permitting selective amine release without accompanying release of heparin or other matrix components.