gebhart/patrepeval huggingface dataset:
Orienting DNA Helices on Gold Using Applied Electric Fields (1998)

Gold surfaces modified with thiol-derivatized DNA duplexes have been investigated as a function of applied electrochemical potential via atomic force microscopy (EC-AFM). At open circuit, monolayers of well-packed DNA helices form with a film depth of 45(3) Å. On the basis of the anisotropic dimensions of these 15 base pair duplexes (20 Å in diameter versus 50 Å in length), this corresponds to an average ∼45° orientation of the helical axis with respect to the gold surface. Under potential control, the monolayer thickness (and therefore the orientation of the helices) changes dramatically with applied potential. At potentials negative of ∼0.45 V (versus a Ag wire quasi-reference electrode) film thicknesses of ∼55 Å are observed, whereas at more positive potentials the monolayer thickness drops to a limiting value of ∼20 Å. These results are consistent with a morphology change in which the helices either stand straight up or lie flat down on the metal surface, depending on the electrode potential relative to the potential of zero charge (pzc). This voltage-induced morphology change is reversible and effectively constitutes a nanoscale mechanical “switch”.
Determination of Fracture Surface Energies by the Cleavage Technique (1963)

The fracture surface energy of a material can be obtained by the cleavage technique, in which a crack is propagated along the median plane of a strip sample by forces applied at the free ends. Unfortunately, the stress distribution in a conventional sample is such that the crack tends to deviate from its original direction, so that, for isotropic materials, external constraints must be imposed to overcome this tendency. To interpret the data, relations have been derived, based on the assumption that simple beam theory can be applied to the system; this assumption is not strictly valid. The use of the constraints can be avoided by machining fine slots along the opposing faces of the sample, and the system can then be analyzed by a direct and unambiguous method. The modified technique has been applied to the glassy polymers poly(methyl methacrylate) and polystyrene for which comparative data are available from both tensile and cleavage experiments.
ADDUCTS OF PIPERAZINE WITH NITRIC OXIDE (1999)

(1999). ADDUCTS OF PIPERAZINE WITH NITRIC OXIDE. Organic Preparations and Procedures International: Vol. 31, No. 2, pp. 189-192.
Probabilistic History Matching With the Capacitance-Resistance Model in Waterfloods: A Precursor to Numerical Modeling (2010)

Abstract Several equally probable sets of uncertain reservoir parameters can normally match a production history. Such equiprobable history-matched solutions (EPHMS) are a way to estimate the uncertainty in hydrocarbon-recovery predictions. Ordinarily, time and resource limitations permit evaluation of only few of the EPHMS, thereby reducing reliability of predictions of numerical models. As a precursor to comprehensive numerical simulations in a probabilistic frame, we suggest the use of capacitance-resistance model or CRM. In CRM only injection and production rates are needed. The CRM is a fast analytic tool for history matching and optimizing waterfloods. In this study, we used CRM and a Buckley-Leverett-based fractional-flow model to rapidly generate many EPHMSs. The EPHMS represent a unique combination of major reservoir variables, such as residual saturations, endpoint mobility ratio, oil and water in-place volumes, and recoverable oil. We used production data from two matured waterfloods and a synthetic field (Synfield) to evaluate the EPHMS. For most cases, one thousand EPHMS and the consequent cumulative distribution functions (CDFs) for several uncertain variables, including recoverable oil, were developed. We compared the CDFs obtained from EPHMS to that of 200 finite-difference simulations performed on the Synfield by changing porosity and residual saturations. EPHMS mimicked the same uncertain range of production forecasts used earlier in the finite-difference model. This approach attested to the goodness of CRM solutions and its ability to quantify reservoir uncertainty. Two field examples illustrated applications of the proposed approach at the field and pattern levels, and provided clues about the remaining oil and its monetary value.
Alkylation of 2-naphthol by alcohols in the presence of base (1977)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTAlkylation of 2-naphthol by alcohols in the presence of baseTaketoshi Kito and Koki OtaCite this: J. Org. Chem. 1977, 42, 11, 2020–2021Publication Date (Print):May 1, 1977Publication History Published online1 May 2002Published inissue 1 May 1977https://pubs.acs.org/doi/10.1021/jo00431a047https://doi.org/10.1021/jo00431a047research-articleACS PublicationsRequest reuse permissionsArticle Views172Altmetric-Citations3LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Effect of ω-Conotoxin GVIA and ω-Agatoxin IVA on the Capsaicin-Sensitive Calcitonin Gene-Related Peptide Release and Autoregulatory Vasodilation in Rat Pial Arteries (1999)

This study assesses the effect of neuronal voltage-sensitive Ca2+ channel blockers, omega-conotoxin GVIA (CTX), and omega-agatoxin IVA (AgTX) on the vasodilation and release of calcitonin gene-related peptide (CGRP), both of which were induced by either application of capsaicin or acute stepwise hypotension. Changes in pial arterial diameter were determined directly through a closed cranial window. The vasodilation of pial artery induced by either CGRP (0.1 micromol/L) or capsaicin (0.3 micromol/L) was significantly inhibited by CGRP(8-37) (0.1 micromol/L) (P < 0.05 and P < 0.05, respectively). The autoregulatory vasodilation to acute stepwise hypotension was severely attenuated by pretreatment with either CTX or AgTX. When the hypotension was kept for 2, 4, and 10 minutes, the releasable CGRP-like immunoreactivity (CGRP-LI) level (vehicle, 13.4+/-1.5 fmol/mm2/30 min) by 10 micromol/L capsaicin from the isolated pial arteries was significantly reduced in the 4- and 10-minute hypotension groups (11.3+/-1.2 fmol/mm2/30 min, P < 0.05, and 11.1+/-1.5 fmol/mm2/30 min, P < 0.05, respectively), but not in 2-min group. Moreover, the CGRP-LI level released by 10 micromol/L capsaicin (13.7+/-0.9 fmol/mm2/30 min) also was significantly depressed by pretreatment with 1 micromol/L CTX to 10.4+/-1.0 fmol/mm2/30 min (P < 0.01) and with 0.1 micromol/L AgTX to 8.7(1.7 fmol/mm2/30 min (P < 0.001), as well as by pretreatment with 10 micro-mol/L capsaicin (6.0+/-1.6 fmol/ mm2/30 min, P < 0.001). These results suggest that the neuronal N- and P-type voltage-sensitive Ca2+ channels are implicated in the release of CGRP from capsaicin-sensitive perivascular sensory nerves in response to acute hypotension, and that the released CGRP may contribute to the autoregulatory vasodilation in the cerebral microcirculation.
Study on Polymer Binders for High-Capacity SiO Negative Electrode of Li-Ion Batteries (2011)

High-capacity SiO powder composite electrodes for rechargeable lithium-ion batteries are prepared with different polymer binders of poly(acrylic acid) (PAA), poly(vinyl alcohol) (PVA), sodium carboxymethyl cellulose (CMCNa), and conventional poly(vinylidene fluoride) (PVdF). Electrode performance of the SiO composites highly depends on selection of binders, and their electrochemical reversibility is drastically improved by using PAA as the binder in comparison to the PVdF, CMCNa, and PVA binders. Coulombic efficiency at the initial cycle is improved for the SiO–PAA composite electrode, and the reversible capacity reaches 700–750 mAh g–1 for continuous fifty cycling test at a rate of 100 mA g–1. The improvement mechanism of SiO–PAA composite electrode is characterized by X-ray diffraction, electron microscopy, X-ray photoelectron spectroscopy, infrared spectroscopy, self-discharge test, and adhesive strength test. Amorphous PAA polymer not only tightly binds but also covers the individual SiO particles. Moreover, the PAA binder suppresses swelling of the composite electrode with the electrolyte solution compared to the PVdF binder. Through-thickness electric resistance of the PAA composite electrode is much lower than that of the PVdF when it is wet with the electrolyte. It is proposed that these characters of the PAA binder effectively suppress isolation of the SiO powders in the composite electrode associated with the large volume expansion/shrinkage during the lithiation/delithiation processes.
Differentiated thyroid cancer cell invasion is regulated through epidermal growth factor receptor-dependent activation of matrix metalloproteinase (MMP)-2/gelatinase A (2006)

Mechanisms of invasion in thyroid cancer remain poorly understood. We hypothesized that signaling via the epidermal growth factor receptor (EGFR) stimulates thyroid cancer cell invasion by altering the expression and cleavage of matrix metalloproteinases (MMPs). Papillary and follicular carcinoma cell lines were treated with EGF, the EGFR tyrosine kinase inhibitor AG1478, and the MMP inhibitors GM-6001 and Col-3. Flow cytometry was used to detect EGFR. In vitro invasion assays, gelatin zymography, and quantitative reverse transcription-PCR were used to assess the changes in invasive behavior and MMP expression and activation. All cell lines were found to overexpress functional EGFR. EGF stimulated invasion by thyroid cancer cells up to sevenfold (P<0.0001), a process that was antagonized completely by AG1478 and Col-3, partially by GM-6001, but not by the serine protease inhibitor aprotinin. EGF upregulated expression of MMP-9 (2.64- to 8.89-fold, P<0.0001) and membrane type-1 MMP (MT1-MMP, 1.97- to 2.67-fold, P<0.0001). This effect was blocked completely by AG1478 and partially by Col-3. The activation of MMP-2 paralleled MT1-MMP expression. We demonstrate that MMPs are critical effectors of invasion in the papillary and follicular thyroid cancer cell lines studied. Invasion is regulated by signaling through EGFR, an effect mediated by augmentation of gelatinase expression and activation. MMP inhibitors and growth factor antagonists may be effective tumoristatic agents for the treatment of aggressive thyroid carcinomas.
Thermal Unfolding of Proteins Probed at the Single Molecule Level Using Nanopores (2012)

The nanopore technique has great potential to discriminate conformations of proteins. It is a very interesting system to mimic and understand the process of translocation of biomacromolecules through a cellular membrane. In particular, the unfolding and folding of proteins before and after going through the nanopore are not well understood. We study the thermal unfolding of a protein, probed by two protein nanopores: aerolysin and α-hemolysin. At room temperature, the native folded protein does not enter into the pore. When we increase the temperature from 25 to 50 °C, the molecules unfold and the event frequency of current blockade increases. A similar sigmoid function fits the normalized event frequency evolution for both nanopores, thus the unfolding curve does not depend on the structure and the net charge of the nanopore. We performed also a circular dichroism bulk experiment. We obtain the same melting temperature (around 45 °C) using the bulk and single molecule techniques.
Posttranslational modification of the carboxy-terminal region of the .beta. subunit of human chorionic gonadotropin (1984)

The beta subunit of human chorionic gonadotropin (hCG) contains at its carboxy terminus an extension of 29 amino acids not found in the beta subunits of the other glycoprotein hormones. This region provides the sites of attachment of four serine-linked oligosaccharide chains. We have examined the synthesis of this subunit in a cell-free translation system derived from Krebs II ascites tumor cells. The primary translation product was found to undergo a temperature-dependent posttranslational modification which resulted in an increase in apparent molecular weight of 2000 on sodium dodecyl sulfate gel electrophoresis. This modification was specific for the beta subunit of hCG, since no changes were observed for the beta subunit of bovine luteinizing hormone or for the alpha subunits of either hormone. The increase in molecular weight occurred in the absence of microsomal membranes and was not due to the addition of N-linked carbohydrate. An identical shift was observed when pre-hCG beta was incubated with extracts of human placenta. The site of modification was localized by fingerprint analysis to a carboxy-terminal tryptic peptide which contains two of the four O-glycosylated serine residues in the mature form of the subunit. The modified protein was resistant to oligosaccharidase digestion and beta-elimination, indicating that it does not contain O-linked oligosaccharides of the type found on mature hCG beta. These results demonstrate that a specific modification of the carboxy-terminal segment of hCG beta synthesized in vitro occurs in the absence of O-linked glycosylation.
Comparison of pertussis toxin (PT)-neutralizing activities and mouse-protective activities of anti-PT mouse monoclonal antibodies (1991)

An assay of neutralizing activity against CHO cell-clustering activity, one of the most common assays for anti-pertussis toxin antibodies, did not correlate well with an assay of the protective activities of monoclonal antibodies. A better correlation between neutralization of leukocytosis-promoting or islet-activating activity and mouse protection against aerosol challenge was seen.
Clinical Grade Treg: GMP Isolation, Improvement of Purity by CD127pos Depletion, Treg Expansion, and Treg Cryopreservation (2008)

The feasibility of Treg based therapy is widely accepted, provided that tailor-made clinical grade procedures for isolation and ex vivo cell handling are available. We here provide further support for this approach by showing that a high Treg purity can be reached, and that isolated cells can be cryopreserved and expanded successfully.
Optical Networks: A Practical Perspective (1998)

This fully updated and expanded second edition of Optical Networks: A Practical Perspective succeeds the first as the authoritative source for information on optical networking technologies and techniques. Written by two of the field's most respected individuals, it covers componentry and transmission in detail but also emphasizes the practical networking issues that affect organizations as they evaluate, deploy, or develop optical solutions. This book captures all the hard-to-find information on architecture, control and management, and other communications topics that
<title>Optical characterization of thin film laser deposition processes</title> (1992)

Pulsed laser deposition (PLD) has recently been shown to be an effective means of depositing thin films from refractory targets. In this study, Nd/YAG and excimer lasers have been used to deposit thin films from refractory, high Tc superconducting, dielectric, ferroelectric and magnetic targets. Optical emission spectroscopy of the laser induced plume has been used to determine the identity and energy (temperature) of the excited state species present in the laser induced plumes. Temporally and spatially resolved optical emission spectra were obtained using a gated intensified photodiode array detector coupled to a grating spectrometer. The individual emission spectra were analyzed to identify the atomic and ionic species present. The temporal and spatial evolution of individual emission lines were used to determine the velocity of the species in the plume. These results were combined with the results from in situ molecular beam mass spectrometric analysis of the plumes. In addition, studies of the stoichiometry and morphology, as well as the electrical properties, of these PLD thin films were carried out for correlation with the spectroscopic observations.
Deep Speech 2: End-to-End Speech Recognition in English and Mandarin (2015)

We show that an end-to-end deep learning approach can be used to recognize either English or Mandarin Chinese speech--two vastly different languages. Because it replaces entire pipelines of hand-engineered components with neural networks, end-to-end learning allows us to handle a diverse variety of speech including noisy environments, accents and different languages. Key to our approach is our application of HPC techniques, resulting in a 7x speedup over our previous system. Because of this efficiency, experiments that previously took weeks now run in days. This enables us to iterate more quickly to identify superior architectures and algorithms. As a result, in several cases, our system is competitive with the transcription of human workers when benchmarked on standard datasets. Finally, using a technique called Batch Dispatch with GPUs in the data center, we show that our system can be inexpensively deployed in an online setting, delivering low latency when serving users at scale.
An integrated robotics and medical control device to quantify atheromatous plaques: experiments on the arteries of a patient (2002)

We study the income of an integrated robotics and medical device, using a force-control law to measure arterial distensibility and to reconstruct in 3D the atheromatous plaques in the arteries. During the medical control, sonographer holds the ultrasound probe attached on the end-effector of the robot and brings it onto the skin of the patient. Then, he can simply get an accurate measure of the arterial distension with a given applied force. He can also teach the robot a scan trajectory in order to reconstruct in 3D the artery. For this reconstruction the robot executes the learnt trajectory step by step, with a programmable and constant force on the artery, recording the Cartesian coordinates of the artery sections. At the same time, the control device synchronizes the recorded images on the patient heartbeat. The very precise set of images and the medical control can be reproduced later under the same conditions. The results are very encouraging and promising.
The Role of Vitamin E in Immune Response and Disease Resistancea (1990)

Vitamin E supplementation enhances humoral and cell-mediated immunity, and augments the efficiency of phagocytosis in laboratory animals, farm animals, and humans. In its disease protection effect vitamin E interacts with other antioxidant nutrients and with other nutrients in the diet. Other antioxidant nutrients, such as vitamin A and beta carotene, also enhance disease resistance. Beta carotene is effective in combination with vitamin E. The optimal dose of vitamin E for maximum protection depends on many factors; thus it has to be established case by case. The delivery system of vitamin E greatly influences its effectiveness. A targeted delivery to localized immunocompetent cells in adjuvant formulations is far more effective than a general dispersed delivery in a diet. Vitamin E adjuvants provided greater immunoprotection against enterotoxemia and epididymitis in sheep than conventional vaccines.
Botulinum toxin: mechanisms of action (2005)

This review describes therapeutically relevant mechanisms of action of botulinum toxin (BT). BT's molecular mode of action includes extracellular binding to glycoproteine structures on cholinergic nerve terminals and intracellular blockade of the acetylcholine secretion. BT affects the spinal stretch reflex by blockade of intrafusal muscle fibres with consecutive reduction of Ia/II afferent signals and muscle tone without affecting muscle strength (reflex inhibition). This mechanism allows for antidystonic effects not only caused by target muscle paresis. BT also blocks efferent autonomic fibres to smooth muscles and to exocrine glands. Direct central nervous system effects are not observed, since BT does not cross the blood-brain-barrier and since it is inactivated during its retrograde axonal transport. Indirect central nervous system effects include reflex inhibition, normalisation of reciprocal inhibition, intracortical inhibition and somatosensory evoked potentials. Reduction of formalin-induced pain suggests direct analgesic BT effects possibly mediated through blockade of substance P, glutamate and calcitonin gene related peptide.
Progressive Visual Analytics: User-Driven Visual Exploration of In-Progress Analytics (2014)

As datasets grow and analytic algorithms become more complex, the typical workflow of analysts launching an analytic, waiting for it to complete, inspecting the results, and then re-Iaunching the computation with adjusted parameters is not realistic for many real-world tasks. This paper presents an alternative workflow, progressive visual analytics, which enables an analyst to inspect partial results of an algorithm as they become available and interact with the algorithm to prioritize subspaces of interest. Progressive visual analytics depends on adapting analytical algorithms to produce meaningful partial results and enable analyst intervention without sacrificing computational speed. The paradigm also depends on adapting information visualization techniques to incorporate the constantly refining results without overwhelming analysts and provide interactions to support an analyst directing the analytic. The contributions of this paper include: a description of the progressive visual analytics paradigm; design goals for both the algorithms and visualizations in progressive visual analytics systems; an example progressive visual analytics system (Progressive Insights) for analyzing common patterns in a collection of event sequences; and an evaluation of Progressive Insights and the progressive visual analytics paradigm by clinical researchers analyzing electronic medical records.