gebhart/patrepeval huggingface dataset:
Nucleotide Sequence of the FAD Synthetase Gene fromCorynebacterium ammoniagenesand Its Expression inEscherichia coli (1995)

The nucleotides of a bifunctional enzyme FAD synthetase gene, which showed both flavokinase and ATP:FMN adenylyltransferase activities, from Corynebacterium ammoniagenes were sequenced. The FAD synthetase gene product consisted of 338 amino acids and had a calculated molecular weight of 37,712. The deduced protein sequence of the FAD synthetase shared a homology with those of the protein X of Escherichia coli, which has been reported to have both flavokinase and ATP:FMN adenylyltransferase activities like the FAD synthetase of C. ammoniagenes, and the protein X of Pseudomonas fluorescens. From the analysis of the flanking sequences of the FAD synthetase gene, the gene organization and the operon structure around the FAD synthetase gene of C. ammoniagenes were thought to be different from those of Gram-negative bacteria. An over-expression system of the FAD synthetase of C. ammoniagenes was constructed in E. coli to study the structure and function of the protein. Under the tandem tryptophan promoter, the FAD synthetase activity increased 2231 times compared to that of non-transformed C. ammoniagenes.
GLUL Promotes Cell Proliferation in Breast Cancer (2017)

Glutamate-ammonia ligase (GLUL) belongs to the glutamine synthetase family. It catalyzes the synthesis of glutamine from glutamate and ammonia in an ATP-dependent reaction. Here, we found higher expression of GLUL in the breast cancer patients was associated with larger tumor size and higher level of HER2 expression. In addition, GLUL was heterogeneously expressed in various breast cancer cells. The mRNA and protein expression levels of GLUL in SK-BR-3 cells were obviously higher than that in the other types of breast cancer cells. Results showed GLUL knockdown in SK-BR-3 cells could significantly decrease the proliferation ability. Furthermore, GLUL knockdown markedly inhibited the p38 MAPK and ERK1/ERK2 signaling pathways in SK-BR-3 cells. Thus, GLUL may represent a novel target for selectively inhibiting p38 MAPK and ERK1/ERK2 signaling pathways and the proliferation potential of breast cancer cells. J. Cell. Biochem. 118: 2018-2025, 2017. © 2016 Wiley Periodicals, Inc.
Controlled Electrophoretic Deposition of Uniquely Nanostructured Star Polymer Films (2007)

The controlled electrophoretic deposition of polystyrene/divinylbenzene (PS/DVB) star polymer films from a colloidal suspension is reported. Liquid suspensions, containing the PS/DVB star polymer, were prepared by injecting a dichloromethane (DCM) solution of the star polymer into a stratified liquid combination of hexane and DCM. A variety of hexane/DCM volume ratios were examined to identify the optimal solution conditions for electrophoretic deposition; thin films were produced from both unmixed and well-mixed hexane/DCM suspensions. Unmixed suspensions yielded spatially separated thin films, deposited in a controlled fashion, that were dependent on the polarity of the corresponding electrode. Films on the positive electrode differed in thickness, microstructure, and appearance from those formed on the negative electrode. In contrast, films produced from well-mixed hexane/DCM suspensions deposited uniformly across only the negative electrode. Atomic force microscopy studies revealed nanostructured surface morphologies that were unique to each of these films. Additionally, these microscopy studies shed light on the possible conformations of star polymers adsorbed on a surface. By controlling the composition and the mixing state of the solution and by controlling the bias of electrodes, we achieved controlled deposition of star polymer films with a specific nanostructure. These nanostructured films may have broad use in optical and biological device applications.
Regiospecific One-Pot Synthesis of Diaryliodonium Tetrafluoroborates from Arylboronic Acids and Aryl Iodides (2008)

Diaryliodonium salts have recently received considerable attention as mild arylation reagents in organic synthesis. This paper describes a regiospecific, sequential one-pot synthesis of symmetrical and unsymmetrical diaryliodonium tetrafluoroborates, which are the most popular salts in metal-catalyzed arylations. The protocol is fast and high-yielding and has a large substrate scope. Furthermore, the corresponding diaryliodonium triflates can conveniently be obtained via an in situ anion exchange.
Evaluation of a New Environmentally Friendly Treatment to Remove Mn3O4 Filter Cake (2012)

Abstract Manganese tetraoxide is used as a weighting material in drilling deep wells (&amp;gt; 90 lb/ft3). Removal of the filter cake that contains Mn3O4 is a difficult task. This is mainly because Mn3O4 is a strong oxidizing agent. Extensive lab work was done to: 1) study the reaction of glycolic acid with Mn3O4 particles (D50 =1 μm) as a function of time at 190°F in a batch reactor, 2) examine the solubility of the filter cake using a modified HP/HT filter press, 3) determine the compatibility and thermal stability of cleaning fluids with α-amylase using an HP/HT visual cell, 4) characterize the filter cake using computer tomography (CT), and 5) assess the retained permeability of limestone and sandstone cores. The results following the removal of the filter cake showed that 4 wt% glycolic acid (4 g Mn3O4 to 200 ml acid solution) dissolved 75 wt% of Mn3O4 particles at 190°F. Glycolic acid (5 wt%) had a removal efficiency of 85 to 90% of manganese tetraoxide-based filter cake after 20 hrs soaking time. The retained permeability was 100% for the Indiana limestone core and 125% for the Berea sandstone cores. CT results showed that glycolic acid was able to stimulate the cores and no formation damage was observed.
Mouse model of angiogenesis. (1998)

Neovascularization of ischemic muscle may be sufficient to preserve tissue integrity and/or function and may thus be considered to be therapeutic. The regulatory role of vascular endothelial growth factor (VEGF) in therapeutic angiogenesis was suggested by experiments in which exogenously administered VEGF was shown to augment collateral blood flow in animals and patients with experimentally induced hindlimb or myocardial ischemia. To address the possible contribution of postnatal endogenous VEGF expression to collateral vessel development in ischemia tissues, we developed a mouse model of hindlimb ischemia. The femoral artery of one hindlimb was ligated and excised. Laser Doppler perfusion imaging (LDPI) was employed to document the consequent reduction in hindlimb blood flow, which typically persisted for up to 7 days. Serial in vivo examinations by LDPI disclosed that hindlimb blood flow was progressively augmented over the course of 14 days, ultimately reaching a plateau between 21 and 28 days. Morphometric analysis of capillary density performed at the same time points selected for in vivo analysis of blood flow by LDPI confirmed that the histological sequence of neovascularization corresponded temporally to blood flow recovery detected in vivo. Endothelial cell proliferation was documented by immunostaining for bromodeoxyuridine injected 24 hours before each of these time points, providing additional evidence that angiogenesis constitutes the basis for improved collateral-dependent flow in this animal model. Neovascularization was shown to develop in association with augmented expression of VEGF mRNA and protein from skeletal myocytes as well as endothelial cells in the ischemic hindlimb; that such reparative angiogenesis is indeed dependent upon VEGF up-regulation was confirmed by impaired neovascularization after administration of a neutralizing VEGF antibody. Sequential characterization of the in vivo, histological, and molecular findings in this novel animal model thus document the role of VEGF as endogenous regulator of angiogenesis in the setting of tissue ischemia. Moreover, this murine model represents a potential means for studying the effects of gene targeting on nutrient angiogenesis in vivo.
Carbonation−Calcination Cycle Using High Reactivity Calcium Oxide for Carbon Dioxide Separation from Flue Gas (2002)

This study is focused on improving the reactivity of a CaO sorbent for its use in a reaction-based process for the separation of carbon dioxide (CO2) from flue gas. The separation process consists of cyclical carbonation (of a metal oxide) and calcination (of the metal carbonate formed) reactions to yield concentrated CO2 from flue gas. CaO sorbents synthesized from naturally occurring limestone and dolomite were microporous in nature. Pore filling and pore pluggage of these micropores limited the conversion of CaO in the carbonation reaction to about 45−50% of the stoichiometric limit. A wet precipitation process was tailored to synthesize high-surface-area precipitated calcium carbonate (PCC). The pores of PCC predominantly lie in the mesoporous range (5−20 nm). The CaO sorbent obtained from PCC (PCC-CaO) was less susceptible to pore pluggage and attained over 90% conversion. PCC-CaO was also capable of maintaining its high reactivity (>90%) over two carbonation−calcination cycles.
Human milk bile salt-activated lipase. Further characterization and kinetic studies. (1981)

Further studies on human milk bile salt-activated lipase were performed to provide kinetic and additional chemical characterizations of this enzyme. The enzyme was homogeneous by urea-sodium dodecyl sulfate-polyacrylamide gel electrophoresis and isoelectric focusing with an isoelectric point of 3.7. A unique feature of the amino acid composition of this enzyme was a high proline content (13 mol %). Results of carbohydrate analyses indicated that the enzyme was a glycoprotein containing fucose, galactose, glucosamine, galactosamine, and sialic acid. Kinetic studies were performed with various water-soluble esters (p-nitrophenyl acetate, 1-monoacetin, 1-monobutyrin, and 1-monocaprylin) as substrate and taurocholate as activator. In the presence of a saturating level of taurocholate, the enzyme reaction was demonstrated to follow a rapid equilibrium random uni bi mechanism. Also, these kinetic studies indicated the formation of an enzyme-activator-substrate ternary complex through a random pathway. The mechanism of the activation by taurocholate was due to its enhancement of the binding of the enzyme to the substrate (6.2-fold) and its enhancement of the rate of conversion from enzyme-substrate transitory complex to the products (1.57-fold) when examined with p-nitrophenyl acetate as substrate.
Acquisition and visualization of colored 3D objects (2002)

This paper presents a complete system for scanning the geometry and surface color of a 3D object and for displaying realistic images of the object from arbitrary viewpoints. A stereo system with active light produces several views of dense range and color data. The data is registered and a surface that approximates the data is constructed. The surface estimate can be fairly coarse, as the appearance of fine detail is recreated by view-dependent texturing of the surface using color images.
Ammonothermal Synthesis of III-Nitride Crystals (2006)

Ammonothermal synthesis of nitrides is reviewed, with an emphasis on gallium and aluminum nitrides due to their important applications as direct wide band gap semiconductors. Since the crystallization process of nitrides involves the formation of some intermediate compounds during ammonothermal synthesis where a mineralizer is used, some ternary amides and ammoniates of aluminum and gallium with alkali metals or halides are also reviewed briefly. The ammonothermal crystallization of GaN and AlN bulk crystals, which is analogous to the hydrothermal growth of oxides, is introduced. Retrograde solubility, mineralizers, pressure−temperature−volume−concentration (PTVC) relations, phase relations, and transport growth of GaN in alkaline solutions are discussed in detail. Recent progress of GaN single-crystal growth by the ammonothermal technique is reported. We have grown GaN bulk single crystals up to 10 mm2 by 1-mm thick. Issues such as ammonia breakdown, impurity incorporation, and scale-up of the ammonothermal growth of III-nitrides and perspectives on the method are also discussed.
Antenna design for UHF RFID tags: a review and a practical application (2005)

In this paper, an overview of antenna design for passive radio frequency identification (RFID) tags is presented. We discuss various requirements of such designs, outline a generic design process including range measurement techniques and concentrate on one practical application: RFID tag for box tracking in warehouses. A loaded meander antenna design for this application is described and its various practical aspects such as sensitivity to fabrication process and box content are analyzed. Modeling and simulation results are also presented which are in good agreement with measurement data.
Synthesis and neuroleptic activity of a series of 1-[1-(benzo-1,4-dioxan-2-ylmethyl)-4-piperidinyl]benzimidazolone derivatives (1987)

A series of 1-[1-(benzo-1,4-dioxan-2-ylmethyl)-4-piperidinyl]benzimid azolones with various substituents in both aromatic rings have been synthesized and tested for neuroleptic activity (antiapomorphine effects and [3H]spiroperidol binding) as well as extrapyramidal effects (cataleptogenic effect). A strong dependence of activity on the 5-substituent in the benzimidazolone moiety could be demonstrated. Some compounds show a large split between the desired antiapomorphine and the undesired extrapyramidal effect. From these, 1-[1-(benzo-1,4-dioxan-2-ylmethyl)-4-piperidinyl]-5-chlor obenzimidazol-2-one hydrochloride (HR 723), 12, has been selected for further preclinical and toxicological profiling.
An Analytical Approach to LINC Power Combining Efficiency Estimation and Optimization (2003)

A new approach for studying the combiner efficiency in a LINC amplifier based on analytical expressions of the instantaneous combiner efficiency and the signal's probability distribution function (PDF) is proposed. The analytical expressions, derived for both a matched combiner and a Chirex outphasing combiner, are applied to compute the combiner efficiency of a LINC amplifier under CDMA and 64QAM signals. A direct approach to determining the optimal shunt reactance used in an outphasing combiner is also proposed and applied to both signals. Validation with a commercial simulator is given.
Transgenic mice studies demonstrate a role for platelet factor 4 in thrombosis: dissociation between anticoagulant and antithrombotic effect of heparin (2004)

The platelet-specific chemokine platelet factor 4 (PF4) is released in large amounts at sites of vascular injury. PF4 binds to heparin with high affinity, but its in vivo biologic role has not been defined. We studied the role of PF4 in thrombosis using heterozygote and homozygote PF4 knock-out mice (mPF4(+/-) and mPF4(-/-), respectively) and transgenic mice overexpressing human PF4 (hPF4(+)). None of these lines had an overt bleeding diathesis, but in a FeCl(3) carotid artery thrombosis model, all showed impaired thrombus formation. This defect in thrombus formation in the mPF4(-/-) animals was corrected by infusing hPF4 over a narrow concentration range. The thrombotic defect in the mPF4(+/-) and mPF4(-/-) animals was particularly sensitive to infusions of the negatively charged anticoagulant heparin. However, the same amount of heparin paradoxically normalized thrombus formation in the hPF4(+) animals, although these animals were anticoagulated systemically. Upon infusion of the positively charged protein, protamine sulfate, the reverse was observed with mPF4(+/-) and mPF4(-/-) animals having improved thrombosis, with the hPF4(+) animals having worsened thrombus formation. These studies support an important role for PF4 in thrombosis, and show that neutralization of PF4 is an important component of heparin's anticoagulant effect. The mechanisms underlying these observations of PF4 biology and their clinical implications remain to be determined.
Highly Optimized Phase Equilibrium Calculations (2013)

Abstract Phase equilibrium calculations can consume a significant fraction of total CPU time in compositional reservoir simulations. Thus, reducing the number calculations based on information from previous time steps is a common practice. Nevertheless, each time step requires a certain number of phase equilibrium calculations, and their computational cost ultimately depends on the speed at which the individual calculation is performed. The non-linear nature of phase equilibrium calculations requires an iterative solution procedure. A common approach is to combine successive substitutions and Newton iterations. However, accelerated successive substitutions, quasi-Newton methods, and reduced methods can reduce the number of iterations or the computational cost per iteration. Unfortunately, the importance of code optimization is rarely discussed in the literature. This paper investigates the impact of a handful of optimization techniques on the execution speeds of phase equilibrium algorithms. A series of benchmarks indicates that improving the instruction level parallelism in dense linear algebra operations and in the evaluation of transcendental functions leads to a 2X speed-up. An additional 3X performance improvement is achieved by a combination of SIMD vectorization and mixed precision implementations.
Inhibition of human platelet thromboxane synthetase by 9,11-azoprosta-5,13-dienoic acid. (1977)

The synthetic prostaglandin analog 9,11-azoprosta-5,13-dienoic acid (azo analog I) has been found to be a potent inhibitor of human platelet thromboxane synthetase by three independent analytical methods: electron-capture gas chromatography, radioisotopic thin-layer chromatography, and radioimmunoassay. In the presence of azo analog I, human platelet aggregation induced by either the prostaglandin endoperoxide PGH2 or arachidonic acid was antagonized. The addition of azo analog I shifted the transformation of endoperoxides away from thromboxane synthesis and toward prostaglandin E2 synthesis. The specificity of azo analog I is demonstrated by its selective inhibition of the second wave of either ADP- or epinephrine-induced platelet aggregation. These data indicate that PGH2 must be converted to thromboxane A2 in order to induce human platelet aggregation.
Hypermethylation of APC promoter 1A is associated with moderate activation of Wnt signalling pathway in a subset  of colorectal serrated adenomas (2009)

Hypermethylation of APC promoter 1A, instead of mutations involving APC and beta-catenin, contributes to moderate activation of Wnt signalling in a subset of SAs.
Antitumor activity of the novel vascular targeting agent ZD6126 in a panel of tumor models. (2002)

These findings provide direct support that ZD6126 selectively disrupts tumor vasculature, demonstrate that it has activity in a range of tumor xenograft models, and show that it can significantly enhance the antitumor efficacy of cisplatin.
Inductor design for VHF tapped-inductor dc-dc power converters (2011)

The design and fabrication of coupled inductors with low profile, low cost, and high power density for tapped-inductor high-step-down dc-dc power converters in the very high frequency (30-300 MHz) range are presented. The inductor consists of a multi-layer thin-polyimide printed circuit board (PCB) and nano-granular thin-film magnetic material deposited on both sides and on beveled cuts to form a fully linked closed core. The magnetic material Co-Zr-O has good soft magnetic properties, high resistivity and high flux density capability. Multi-layer Co-Zr-O/ZrO <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sub> thin films are used to improve the performance of the magnetic core. A winding loss model of this coupled inductor is presented. Coupled inductors with turns ratios 2 and 10 for several different converter applications have been fabricated.
Plasminogen and matrix metalloproteinase activation by enzymatically modified low density lipoproteins in monocytes and smooth muscle cells (2005)

Protease activity promotes the progression and rupture of atherosclerotic plaques. LDL has been described to become enzymatically modified within the vessel wall yielding an atherogenic moiety (E-LDL). We studied the effect of E-LDL on the activation of plasminogen and matrix metalloproteinases (MMPs) in monocytes and vascular smooth muscle cells (VSMCs) as well as on MMP activation during cellular interactions. Human monocytes, monocytic MonoMac6 cells and human VSMCs were incubated with human native LDL (n-LDL) or E-LDL for 24 hours. E-LDL in contrast to n-LDL induced substantial activation of the plasminogen activation system as well as of the MMP system in monocytic cells, as measured by enhanced cell surface expression of the urokinase receptor (uPAR),the extracellular matrix metalloproteinase Inducer (EMMPRIN) and the membrane type-1 MMPs (MT1-MMP,MMP-14), as well as by secretion of active uPA, and of MMP-9. Consistently, E-LDL-treated monocytes exhibited increased transmigration through "matrigel", which was specifically abrogated by the MMP inhibitor galardin or the plasmin inhibitor aprotinin. In VSMCs, E-LDL induced MMP-1 and MMP-2 secretion. Moreover, monocyte incubation with supernatants of E-LDL-treated (but not n-LDL-treated) VSMCs strongly induced MMP-9 in monoytes, which was inhibited by blocking mAb anti-TNF-alpha. Together, enzymatical modification of LDL allows a direct activation of MMP expression in monocytes and VSMCs, and indirectly promotes the induction of paracrine, cytokine-mediated intercellular activation processes. There by, E-LDL may contribute to atheroprogression, inflammation and plaque rupture.
Platelet activation during steady state sickle cell disease. (1983)

Previous reports have given conflicting conclusions of the role platelets may play in initiating vaso-occlusive sickle cell crisis. Seven patients homozygous for sickle cell hemoglobin, and seven age, race and sex matched controls were each studied on at least two occasions in a six week period of normal health. The number of platelets circulating as aggregates, the plasma concentration of beta-thromboglobulin (beta-TG) and platelet factor 4 (PF-4) were significantly elevated compared with controls. These findings were confirmed with a second series of fourteen patients and nine controls. Patient's platelets in plasma adjusted for both platelet number and citrate concentration aggregated more in response to low concentrations (0.4 and 1 microM) but less to higher concentrations (4 and 20 microM) of ADP and needed significantly more prostacyclin (PGI2) to inhibit ADP induced aggregation than did platelets from control subjects. There was no significant difference in plasma concentration of fibrinopeptide A and thromboxane (Tx)B2, nor in the platelet generation of TxB2 and release of serotonin and beta TG induced by aggregating agents. Thus, the platelets of patients with sickle cell anemia in the steady state are readily activated and respond in vivo by increased formation of aggregates and release of beta TG and PF-4.