gebhart/patrepeval huggingface dataset:
Fluorescence quantum yield determinations. 9,10-Diphenylanthracene as a reference standard in different solvents (1976)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTFluorescence quantum yield determinations. 9,10-Diphenylanthracene as a reference standard in different solventsJohn V. Morris, Mary A. Mahaney, and J. Robert HuberCite this: J. Phys. Chem. 1976, 80, 9, 969–974Publication Date (Print):April 1, 1976Publication History Published online1 May 2002Published inissue 1 April 1976https://pubs.acs.org/doi/10.1021/j100550a010https://doi.org/10.1021/j100550a010research-articleACS PublicationsRequest reuse permissionsArticle Views7369Altmetric-Citations545LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access options Get e-Alerts
Polyomavirus Infection of Renal Allograft Recipients (1999)

Polyomavirus (PV) exceptionally causes a morphologically manifest renal allograft infection. Five such cases were encountered in this study, and were followed between 40 and 330 d during persistent PV renal allograft infection. Transplant (Tx) control groups without PV graft infection were analyzed for comparison. Tissue and urine samples were evaluated by light microscopy, immunohistochemistry, electron microscopy, and PCR. The initial diagnosis of PV infection with the BK strain was made in biopsies 9+/-2 mo (mean +/- SD) post-Tx after prior rejection episodes and rescue therapy with tacrolimus. All subsequent biopsies showed persistent PV infection. Intranuclear viral inclusion bodies in epithelial cells along the entire nephron and the transitional cell layer were histologic hallmarks of infection. Affected tubular cells were enlarged and often necrotic. In two patients, small glomerular crescents were found. In 54% of biopsies, infection was associated with pronounced inflammation, which had features of cellular rejection. All patients were excreting PV-infected cells in the urine. PV infection was associated with 40% graft loss (2 of 5) and a serum creatinine of 484+/-326 micromol/L (mean +/- SD; 11 mo post-Tx). Tx control groups showed PV-infected cells in the urine in 5%. Control subjects had fewer rejection episodes (P<0.05) and stable graft function (P = 0.01). It is concluded that a manifest renal allograft infection with PV (BK strain) can persist in heavily immunosuppressed patients with recurrent rejection episodes. PV mainly affects tubular cells and causes necrosis, a major reason for functional deterioration. A biopsy is required for diagnosis. Urine cytology can serve as an adjunct diagnostic tool.
Mapping of the MYC gene to band 8q24.12→q24.13 by R-banding and distal to fra(8)(q24.11), FRA8E, by fluorescence in situ hybridization (1991)

The MYC gene was mapped to R-banded human prometaphase chromosomes and to chromosomes expressing fra(8)(q24.11) by fluorescence in situ hybridization. By high-resolution banding analysis, the fluorescent signals were localized to R-positive band q24.12----q24.13 of the long arm of chromosome 8. Furthermore, the signals were localized near the middle part, q24.12----q24.13, of the distal portion of fra(8)(q24.11) expression. Thus, the precise localization of MYC was to the subband 8q24.12----q24.13.
The RAD9 Gene Controls the Cell Cycle Response to DNA Damage in Saccharomyces cerevisiae (1988)

Cell division is arrested in many organisms in response to DNA damage. Examinations of the genetic basis for this response in the yeast Saccharomyces cerevisiae indicate that the RAD9 gene product is essential for arrest of cell division induced by DNA damage. Wild-type haploid cells irradiated with x-rays either arrest or delay cell division in the G2 phase of the cell cycle. Irradiated G1 and M phase haploid cells arrest irreversibly in G2 and die, whereas irradiated G2 phase haploid cells delay in G2 for a time proportional to the extent of damage before resuming cell division. In contrast, irradiated rad9 cells in any phase of the cycle do not delay cell division in G2, but continue to divide for several generations and die. However, efficient DNA repair can occur in irradiated rad9 cells if irradiated cells are blocked for several hours in G2 by treatment with a microtubule poison. The RAD9-dependent response detects potentially lethal DNA damage and causes arrest of cells in G2 until such damage is repaired.
Aqueous RAFT Synthesis of Micelle-Forming Amphiphilic Block Copolymers Containing N-Acryloylvaline. Dual Mode, Temperature/pH Responsiveness, and “Locking” of Micelle Structure through Interpolyelectrolyte Complexation (2007)

Temperature- and pH-responsive, micelle-forming, amphiphilic block copolymers were prepared from N,N-dimethylacrylamide (DMA), N-isopropylacrylamide (NIPAM), and N-acryloylvaline (AVAL) utilizing aqueous reversible addition−fragmentation chain transfer (RAFT) polymerization. A series of block copolymers were synthesized by employing DMA as a macro-chain transfer agent to mediate the statistical copolymerization of NIPAM with AVAL. Structural organization and solution behavior were investigated utilizing dynamic light scattering, two-dimensional NMR spectroscopy, and transmission electron microscopy. It has been demonstrated that the critical micellization temperature for the block polymers can be tuned to range from ≈10 to 36 °C by adjusting the solution pH. Micelles with apparent hydrodynamic diameters from 45 to 86 nm are formed between pH 2 and 5. Above pH 5, a sufficient number of the AVAL units are deprotonated which prevents micellization. The extent of pH and temperature changes on the apparent hydrodynamic diameters have been illustrated via 3-D plots. Significantly, micelles assembled within a specified range of pH and temperature can be “locked” by interpolyelectrolyte complexation of anionic AVAL segments with those of a cationic polymer, in this case a RAFT-generated poly([ar-vinylbenzyl]trimethylammonium chloride) (PVBTAC). When the temperature is lowered to room temperature, the polymeric micelles remain “locked” in their multimeric structures which remain dispersed in water. Addition of 0.3 M NaCl to the aqueous solution results in dissociation of the complexes into the respective water-soluble components.
T Cell Activation by Antibody-Like Immunoreceptors: Increase in Affinity of the Single-Chain Fragment Domain above Threshold Does Not Increase T Cell Activation against Antigen-Positive Target Cells but Decreases Selectivity (2004)

Chimeric TCRs with an Ab-derived binding domain confer predefined specificity and MHC-independent target binding to T cells for use in adoptive immunotherapy. We investigated the impact of receptor binding affinity on the activation of grafted T cells. A series of anti-ErbB2 single-chain fragment binding domains with a K(d) ranging from 3.2 x 10(-7) to 1.5 x 10(-11) M was linked to CD3zeta-derived immunoreceptors and expressed in human PBL. Solid phase bound ErbB2 protein triggered activation of receptor-grafted T cells in a dose-dependent manner. The activation threshold inversely correlated with the affinity of the receptor binding domain. The maximum level of cellular activation, however, was the same and independent of the binding affinity. Upon binding to ErbB2(+) cells, T cells grafted with immunoreceptors carrying a single-chain fragment of K(d) < 10(-8) M were activated in a similar fashion against cells with different amounts of ErbB2 on the surface. T cells with a low affinity receptor (K(d) > 10(-8) M), however, were activated exclusively by cells with high amounts of ErbB2. In conclusion, recombinant immunoreceptors of higher affinity do not necessarily induce a more potent activation of T cells than low affinity immunoreceptors, but the higher affinity immunoreceptors exhibit less discrimination between target cells with high or low Ag expression levels.
NLRP3 Promotes Diabetic Bladder Dysfunction and Changes in Symptom-Specific Bladder Innervation (2018)

The NLRP3 inflammasome senses diabetic metabolites and initiates inflammation implicated in diabetic complications and neurodegeneration. No studies have investigated NLRP3 in diabetic bladder dysfunction (DBD), despite a high clinical prevalence. In vitro, we found that numerous diabetic metabolites activate NLRP3 in primary urothelial cells. In vivo, we demonstrate NLRP3 is activated in urothelia from a genetic type 1 diabetic mouse (Akita) by week 15. We then bred an <i>NLRP3<sup>-/-</sup></i> genotype into these mice and found this blocked bladder inflammation and cystometric markers of DBD. Analysis of bladder innervation established an NLRP3-dependent decrease in overall nerve density and Aδ-fibers in the bladder wall along with an increase in C-fiber populations in the urothelia, which potentially explains the decreased sense of bladder fullness reported by patients and overactivity detected early in DBD. Together, the results demonstrate the role of NLRP3 in the genesis of DBD and suggest specific NLRP3-mediated neuronal changes can produce specific DBD symptoms.
Current treatment algorithm for the management of lower-risk MDS (2017)

Lower risk myelodysplastic syndromes (MDS), defined as MDS with a Revised International Prognostic Scoring System score ≤3.5 points, will remain a challenging entity in 2018. Supportive care continues to be the linchpin of treatment, although the options to reduce transfusion needs are broadening. To achieve red blood cell transfusion independence in non-del(5q) patients, erythropoiesis-stimulating agents remain a mainstay of therapy as long as endogenous erythropoietin levels are <500 U/L (and preferably <200 U/L). Experimental strategies for patients ineligible for erythropoiesis-stimulating agents or relapsing after gaining transfusion independence include immunosuppressive agents, transforming growth factor β inhibitors, and lenalidomide. All these alternatives have shown reasonable response rates in selected patient populations with lower risk MDS. Patients with del(5q) disease can derive long-term benefit from lenalidomide, and some patients remain transfusion free for extended periods even after discontinuation of the drug. In rare cases in which thrombocytopenia is the main clinical problem leading to clinically significant bleeding events, thrombopoietin receptor analogues may alleviate bleeding, increase platelet counts, and rarely lead to trilineage responses. It seems prudent to use these drugs only in patients with confirmed bone marrow blast counts <5%. Allogeneic stem cell transplantation is reasonable for patients with high molecular risk of progression and those failing several lines of treatment with signs of progression toward higher-risk MDS.
Regulation of Cystic Fibrosis Transmembrane Conductance Regulator by MicroRNA-145, -223, and -494 Is Altered in ΔF508 Cystic Fibrosis Airway Epithelium (2013)

Expression of the cystic fibrosis transmembrane conductance regulator (CFTR) is altered in individuals with the ΔF508 CFTR mutation. We previously reported differential expression of microRNA (miRNA) in CF airway epithelium; however, the role of miRNA in regulation of CFTR expression here remains unexplored. In this study, we investigated the role of upregulated miRNAs in CFTR regulation in vivo in bronchial brushings from individuals homozygous or heterozygous for ΔF508 CFTR, validated our observations in vitro, and assessed the impact of defective chloride ion conductance, genotype, and colonization status on miRNA expression. miRNA target prediction was performed in silico, and expression of miRNA and target genes were measured by quantitative real-time PCR and/or Western blotting. Overexpression and inhibition studies were performed with pre-miRs or antimiRs, respectively, and a luciferase reporter gene was used to elucidate direct miRNA-target interactions. miR-145, miR-223, and miR-494 were upregulated in CF versus non-CF bronchial brushings and cell lines; in ΔF508 CFTR homozygotes versus heterozygotes; in subjects positive for P. aeruginosa; and in cells treated with a CFTR inhibitor or IL-1β. Reciprocal downregulation or upregulation of CFTR gene and/or protein expression was observed after miRNA manipulation and direct miRNA-target relationships demonstrated via a reporter system containing a wild type or mutated full-length CFTR 3' untranslated region. Increased expression of miR-145, miR-223, and miR-494 in vivo in bronchial epithelium of individuals carrying the ΔF508 CFTR mutation correlates with decreased CFTR expression. Defective CFTR function, Pseudomonas colonization, and inflammation may affect miRNA expression and contribute to the regulation of ΔF508 CFTR.
Therapeutic human papillomavirus DNA vaccination strategies to control cervical cancer (2007)

A persistent human papillomavirus (HPV) infection is considered causal and necessary for the continued growth of cervical cancer. Thus, vaccination against HPV represents a plausible approach to prevent and treat cervical cancer. A report in the current issue of the European Journal of Immunology describes a therapeutic HPV DNA vaccination strategy using the HPV-16 E7 antigen fused to the invariant chain to enhance the E7-specific CD8+ and CD4+ T cell immune responses, resulting in a potent anti-tumor effect against E7-expressing tumors. Continued exploration of HPV therapeutic DNA vaccines may lead to eventual clinical application.
A haptic interface for virtual simulation of endoscopic surgery. (1996)

Virtual reality can be described as a convincingly realistic and naturally interactive simulation in which the user is given a first person illusion of being immersed within a computer generated environment While virtual reality systems offer great potential to reduce the cost and increase the quality of medical training, many technical challenges must be overcome before such simulation platforms offer effective alternatives to more traditional training means. A primary challenge in developing effective virtual reality systems is designing the human interface hardware which allows rich sensory information to be presented to users in natural ways. When simulating a given manual procedure, task specific human interface requirements dictate task specific human interface hardware. The following paper explores the design of human interface hardware that satisfies the task specific requirements of virtual reality simulation of Endoscopic surgical procedures. Design parameters were derived through direct cadaver studies and interviews with surgeons. Final hardware design is presented.
Theoretical studies of light propagation in photonic and plasmonic devices (2007)

Photonics nowadays is one of the most rapidly developing areas of modern physics. Photonic chips are considered to be promising candidates for a new generation of high-performance systems for informational technology, as the photonic devices provide much higher information capacity in comparison to conventional electronics. They also offer the possibility of integration with electronic components to provide increased functionality. Photonics has also found numerous applications in various fields including signal processing, computing, sensing, printing, and others. Photonics, which traditionally covers lasing cavities, waveguides, and photonic crystals, is now expanding to new research directions such as plasmonics and nanophotonics. Plasmonic structures, namely nanoparticles, metallic and dielectric waveguides and gratings, possess unprecedented potential to guide and manipulate light at nanoscale. This Thesis presents the results of theoretical studies of light propagation in photonic and plasmonic structures, namely lasing disk microcavities, photonic crystals, metallic gratings and nanoparticle arrays. A special emphasis has been made on development of high-performance techniques for studies of photonic devices. The following papers are included: In the first two papers (Paper I and Paper II) we developed a novel scattering matrix technique for calculation of resonant states in 2D disk microcavities with the imperfect surface or/and inhomogeneous refraction index. The results demonstrate that the surface imperfections represent the crucial factor determining the $Q$ factor of the cavity. A generalization of the scattering-matrix technique to the quantum-mecha\\-nical electron scattering has been made in Paper III. This has allowed us to treat a realistic potential of quantum-corrals (which can be considered as nanoscale analogues of optical cavities) and has provided a new insight and interpretation of the experimental observations. Papers IV and V present a novel effective Green's function technique for studying light propagation in photonic crystals. Using this technique we have analyzed surface modes and proposed several novel surface-state-based devices for lasing/sensing, waveguiding and light feeding applications. In Paper VI the propagation of light in nanorod arrays has been studied. We have demonstrated that the simple Maxwell Garnett effective-medium theory cannot properly describe the coupling and clustering effects of nanorods. We have demonstrated the possibility of using nanorod arrays as high-quality polarizers. In Paper VII we modeled the plasmon-enhanced absorption in polymeric solar cells. In order to excite a plasmon we utilized a grated aluminum substrate. The increased absorption has been verified experimentally and good agreement with our theoretical data has been achieved.
Approximate computation of multidimensional aggregates of sparse data using wavelets (1999)

Computing multidimensional aggregates in high dimensions is a performance bottleneck for many OLAP applications. Obtaining the exact answer to an aggregation query can be prohibitively expensive in terms of time and/or storage space in a data warehouse environment. It is advantageous to have fast, approximate answers to OLAP aggregation queries. In this paper, we present a novel method that provides approximate answers to high-dimensional OLAP aggregation queries in massive sparse data sets in a time-efficient and space-efficient manner. We construct a compact data cube , which is an approximate and space-efficient representation of the underlying multidimensional array, based upon a multiresolution wavelet decomposition. In the on-line phase, each aggregation query can generally be answered using the compact data cube in one I/O or a smalll number of I/Os, depending upon the desired accuracy. We present two I/O-efficient algorithms to construct the compact data cube for the important case of sparse high-dimensional arrays , which often arise in practice. The traditional histogram methods are infeasible for the massive high-dimensional data sets in OLAP applications. Previously developed wavelet techniques are efficient only for dense data. Our on-line query processing algorithm is very fast and capable of refining answers as the user demands more accuracy. Experiments on real data show that our method provides significantly more accurate results for typical OLAP aggregation queries than other efficient approximation techniques such as random sampling.
The “Common Cold” in Frail Older Persons: Impact of Rhinovirus and Coronavirus in a Senior Daycare Center (1997)

Rhinovirus and coronavirus 229E are common causes of moderately debilitating acute respiratory illnesses among older persons attending daycare.
Minerals Formed by Organisms (1981)

Organisms are capable of forming a diverse array of minerals, some of which cannot be formed inorganically in the biosphere. The initial precipitates may differ from the form in which they are finally stabilized, or during development of the organism one mineral may substitute for another. Biogenic minerals commonly have attributes which distinguish them from their inorganic counterparts. They fulfill important biological functions. They have been formed in ever-increasing amounts during the last 600 million years and have radically altered the character of the biosphere.
Receptor Crosslinking: A General Method to Trigger Internalization and Lysosomal Targeting of Therapeutic Receptor:Ligand Complexes (2015)

A major unmet clinical need is a universal method for subcellular targeting of bioactive molecules to lysosomes. Delivery to this organelle enables either degradation of oncogenic receptors that are overexpressed in cancers, or release of prodrugs from antibody-drug conjugates. Here, we describe a general method that uses receptor crosslinking to trigger endocytosis and subsequently redirect trafficking of receptor:cargo complexes from their expected route, to lysosomes. By incubation of plasma membrane receptors with biotinylated cargo and subsequent addition of streptavidin to crosslink receptor:cargo-biotin complexes, we achieved rapid and selective lysosomal targeting of transferrin, an anti-MHC class I antibody, and the clinically approved anti-Her2 antibody trastuzumab. These three protein ligands each target a receptor with a distinct cellular function and intracellular trafficking profile. Importantly, we confirmed that crosslinking of trastuzumab increased lysosomal degradation of its cognate oncogenic receptor Her2 in breast cancer cell lines SKBR3 and BT474. These data suggest that crosslinking could be exploited for a wide range of target receptors, for navigating therapeutics through the endolysosomal pathway, for significant therapeutic benefit.
Cytoplasmic inhibition of carotenoid biosynthesis with virus-derived RNA. (1995)

The carotenoid biosynthetic pathway in higher plants was manipulated by using an RNA viral vector. A cDNA encoding phytoene synthase and a partial cDNA encoding phytoene desaturase (PDS) were placed under the transcriptional control of a tobamovirus subgenomic promoter. One to two weeks after inoculation, systemically infected Nicotiana benthamiana plants were analyzed for phytoene. Leaves from transfected plants expressing phytoene synthase developed a bright orange phenotype and accumulated high levels of phytoene. Cytoplasmic inhibition of plant gene expression by viral RNA was demonstrated with an antisense RNA transcript to a partial PDS cDNA derived from tomato. The leaves of the plants transfected with the antisense PDS sequence developed a white phenotype and also accumulated high levels of phytoene. A partial cDNA to the corresponding N. benthamiana PDS gene was isolated and found to share significant homology with the tomato antisense PDS transcript. This work demonstrates that an episomal RNA viral vector can be used to deliberately manipulate a major, eukaryotic biosynthetic pathway. In addition, our results indicate that an antisense transcript generated in the cytoplasm of a plant cell can turn off endogenous gene expression.