gebhart/patrepeval huggingface dataset:
Single sperm typing demonstrates that reduced recombination is associated with the production of aneuploid 24,XY human sperm (2001)

To account for the increased proportion of paternal nondisjunction in 47,XXY males as compared to other trisomies, it has been suggested that the XY bivalent, with its reduced region of homology, is particularly susceptible to nondisjunction. Molecular studies of liveborn Klinefelter syndrome (47,XXY) individuals have reported an association between the absence of recombination in the pseudoautosomal region and nondisjunction of the XY bivalent. In this study we examined single sperm from a normal 46,XY male to determine if there is any alteration in the recombination frequency of aneuploid disomic 24,XY sperm compared to unisomic sperm (23,X or Y). Two DNA markers STS/STS pseudogene and DXYS15 were typed in sperm from a heterozygous man to determine if recombination had occurred in the pseudoautosomal region. Individual unisomic sperm (23,X or Y) were isolated using a FACStar(Plus) flow cytometer into PCR tubes. To identify disomic 24,XY sperm, 3-colour FISH analysis was performed with probes for chromosomes X,Y and 1. The 24,XY cells were identified using fluorescence microscopy, each disomic sperm was scraped off the slide using a glass needle attached to a micromanipulator and then put into a PCR tube. Hemi-nested PCR analysis of the two markers was performed to determine the frequency of recombination. A total of 329 unisomic sperm and 150 disomic sperm have been typed. The frequency of recombination between the two DNA markers was 38.3% for the unisomic sperm, similar to frequencies previously reported. The 24,XY disomic sperm had an estimated recombination frequency of 25.3%, however, a highly significant decrease compared to the unisomic 23,X or 23,Y sperm (chi(2) = 10.7, P = 0.001). This direct analysis of human sperm indicates that lack of recombination in the pseudoautosomal region is a significant cause of XY nondisjunction and thus Klinefelter syndrome.
Alzheimer's disease β-amyloid peptides are released in association with exosomes (2006)

Although the exact etiology of Alzheimer's disease (AD) is a topic of debate, the consensus is that the accumulation of beta-amyloid (Abeta) peptides in the senile plaques is one of the hallmarks of the progression of the disease. The Abeta peptide is formed by the amyloidogenic cleavage of the amyloid precursor protein (APP) by beta- and gamma-secretases. The endocytic system has been implicated in the cleavages leading to the formation of Abeta. However, the identity of the intracellular compartment where the amyloidogenic secretases cleave and the mechanism by which the intracellularly generated Abeta is released into the extracellular milieu are not clear. Here, we show that beta-cleavage occurs in early endosomes followed by routing of Abeta to multivesicular bodies (MVBs) in HeLa and N2a cells. Subsequently, a minute fraction of Abeta peptides can be secreted from the cells in association with exosomes, intraluminal vesicles of MVBs that are released into the extracellular space as a result of fusion of MVBs with the plasma membrane. Exosomal proteins were found to accumulate in the plaques of AD patient brains, suggesting a role in the pathogenesis of AD.
Internetworking wireless terminals to local area networks via radio bridges (2003)

The author presents a novel distributed architecture for wireless local area networks (WLANs), where each wireless terminal internetworks with a backbone local area network (LAN) via several radio bridges. The site diversity affords some protections against slow fading and shadowing in the indoor environment. Multiaccess interference from multiple sites sharing the same radio channel is minimized by exploiting the capture effect of spread-spectrum signalling, which also gives additional protections against interference from multipath signals. The internetworking protocol employs a self-learning routing algorithm, which automatically adapts to changes in terminal locations, and prevents multiple copies of each data frame from being forwarded over the backbone LAN. The distributed WLAN architecture eases the management of network topological changes and terminal mobility relative to centralized cellular architectures.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
The dispersion of gram-negative lipopolysaccharide by deoxycholate. Subunit molecular weight. (1980)

The lipopolysaccharide (LPS) was isolated from three strains of Salmonella typhimurium, a "smooth" strain, STM 7, the Ra mutant, TV 119, and the Re mutant, SL 1102. The effect of depletion of divalent cations on structure and the effect of deoxycholate on hydrodynamic behavior were studied. The results confirmed previous work by others that divalent cations and hydrophobic forces are important factors influencing LPS size and morphology. The binding of deoxycholate to LPS was measured. When the weight average molecular weights of the deoxycholate-dissociated LPS were determined by sedimentation equilibrium and corrected for bound deoxycholate, the values 5,555, 10,607, and 15,592, respectively, for Re, Ra, and "smooth" LPS were in good agreement with calculated formula weights. Although others have suggested that the basic LPS subunit is a trimer, our results suggest that it exists in the dimeric form.
A Supra‐photoswitch Involving Sandwiched DNA Base Pairs and Azobenzenes for Light‐Driven Nanostructures and Nanodevices (2009)

A supra-photoswitch is designed for complete ON/OFF switching of DNA hybridization by light irradiation for the purpose of using DNA as a material for building nanostructures. Azobenzenes, attached to D-threoninols that function as scaffolds, are introduced into each DNA strand after every two natural nucleotides (in the form (NNX)n where N and X represent the natural nucleotide and the azobenzene moiety, respectively). Hybridization of these two modified strands forms a supra-photoswitch consisting of alternating natural base pairs and azobenzene moieties. In this newly designed sequence, each base pair is sandwiched between two azobenzene moieties and all the azobenzene moieties are separated by base pairs. When the duplex is irradiated by visible light, the azobenzene moieties take the trans form and this duplex is surprisingly stable compared to the corresponding native duplex composed of only natural oligonucleotides. On the other hand, when the azobenzene moieties are isomerized to the cis form by UV light irradiation, the duplex is completely dissociated. Based on this design, a DNA hairpin structure is synthesized that should be closed by visible light irradiation and opened by UV light irradiation at the level of a single molecule. Indeed, perfect ON/OFF photoregulation is attained. This is a promising strategy for the design of supra-photoswitches such as photoresponsive sticky ends on DNA nanodevices and other nanostructures.
Formation of artificial lipid bilayers using droplet dielectrophoresis (2008)

We describe the formation of artificial bilayer lipid membranes (BLMs) by the controlled, electrical manipulation of aqueous droplets immersed in a lipid-alkane solution. Droplet movement was generated using dielectrophoresis on planar microelectrodes covered in a thin insulator. Droplets, surrounded by lipid monolayers, were brought into contact and spontaneously formed a BLM. The method produced BLMs suitable for single-channel recording of membrane protein activity and the technique can be extended to create programmable BLM arrays and networks.
Unfolding of Ribonuclease A on Silica Nanoparticle Surfaces (2007)

This paper reports on the unfolding behavior of ribonuclease A (RNase A) on silica nanoparticle surfaces and quantitively demonstrates that nanoscale size and surface curvature play key roles in influencing the stability of adsorbed proteins. Urea denaturation analyses showed that the thermodynamic stability of RNase A decreased upon adsorption onto the nanoparticles, with greater decrease on larger nanoparticles. The stability changes of RNase A correlate well with the changes in the protein-nanoparticle interactions, which increase as the surface contact area and surface charge interaction increases. This study, therefore, provides fundamental information on the effect of nanoscale surfaces on protein structure and function.
Weed Control Methods Handbook: Tools & Techniques for Use in Natural Areas (2001)

Invasive non-native plants are a serious threat to native species, communities, and ecosystems in many areas around the world. They can compete with and displace native plants, animals, and other organisms that depend on them, alter ecosystem functions and cycles significantly, hybridize with native species, and promote other invaders. The good news is that many plant invasions can be reversed, halted or slowed, and in certain situations, even badly infested areas can be restored to healthy systems dominated by native species. In most instances this requires taking action to control and manage those invasive plants. This handbook provides you with detailed information about the tools and techniques available for controlling invasive plants, or weeds, in natural areas. Whenever possible, language familiar to natural area managers is used, and unfamiliar terms and jargon borrowed from other fields are defined. Before embarking on a weed management program, it is important to develop a straightforward rationale for the actions you plan to take. We believe this is best accomplished using an adaptive management approach as follows (see Figure 1): (1) establish management goals and objectives for the site; (2) determine which plant species or populations, if any, block or have potential to block attainment of the management goals and objectives; (3) determine which methods are available to control the weed(s); (4) develop and implement a management plan designed to move conditions toward management goals and objectives; (5) monitor and assess the impacts of management actions in terms of their effectiveness in moving conditions toward these goals and objectives; and (6) reevaluate, modify, and start the cycle again. Note that control activities are not begun until the first three steps have been taken. A weed control program is best viewed as part of an overall restoration program, so focus on what you want in place of the weed, rather than simply eliminating the weed. When selecting control methods, keep in mind that the ultimate purpose of the work is to preserve native species, communities, and/or functioning ecosystems.
PAC-MAN, A Precision Alignment Control System for Multiple Laser Beams Self-Adaptive through the Use of Noise (1987)

A control system is described that aligns the 96 beams of the Los Alamos National Laboratory KrF laser system to within a pointing accuracy of 5 µrad within 5 min and maintains the alignment in real time. This performance is made possible through a novel use of random noise. The 96 beams, together with optical benchmarks, are imaged on a single television (TV) camera. The pointing angles of those beams are estimated from the arithmetic means of the pixel coordinates within the beam images. The pixel intensities of each TV frame are mapped into a binary decision array based on whether or not the pixel intensity is above or below a threshold criterion. Existing, or introduced, random noise in the TV signal causes the contents of this array to vary from frame to frame, even when the actual beam is stationary. The beam positions are estimated from the pixel coordinates and their associated elements within this array. Finally, the beam angle estimates are updated from these position estimates, each TV frame, in combination with all previous estimates. This finds the contributions of the beam edges to the beam position by directly using pixels with intensities both above and below the beam threshold criteria, eliminating the need (possibly unrealizable) to do so by software interpolation algorithms. It does this very quickly, resulting in great data compression without use of computer time.
Hepatitis B virus infection among street youths in Montreal. (1999)

Street youths are at high risk for HBV infection. Early and complete HBV vaccination among this vulnerable population is urgently needed.
Serological analysis of cell surface antigens of malignant human brain tumors (1978)

Sera from 30 patients with astrocytoma were tested for antibody reacting with cell surface antigens of cultured autologous astrocytoma cells. Ten percent of the patients had antibody detectable by mixed hemadsorption assays, approximately 50% by immune adherence and protein A assays, and 100% by anti-C3-mixed hemadsorption assays. Absorption analysis of reactive sera with autologous, allogeneic, and xenogeneic cells permitted the definition of three classes of astrocytoma cell surface antigens. Class I antigens showed an absolute restriction to autologous astrocytoma cells. Class II antigens were shared by all astrocytomas tested and could be detected also on neuroblastoma, sarcoma, and some (but not all) melanoma cell lines; these antigens were not found on cell lines derived from carcinomas or normal tissues. Class III antigens were widely distributed on cultured normal and malignant cells of human and animal origin. In this series, sera from 2 patients recognized class I antigens, 4 patients' serum recognized class II antigens, and 13 patients' sera recognized class III antigens. Absorption tests have shown that the AJ (class II) antigen of astrocytoma is serologically related to the previously described AH (class II) antigen of melanoma; in tests of nine melanoma cell lines, there was a correspondence between the AJ and AH phenotypes. This method of autologous typing provides a way to classify the cell surface antigens of astrocytomas and to assess the clinical significance of humoral immunity to these antigens.
Aspects of the synthesis of poly(styrene-b-isobutylene-b-styrene) block copolymers using living carbocationic polymerization (1993)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTAspects of the synthesis of poly(styrene-b-isobutylene-b-styrene) block copolymers using living carbocationic polymerizationRobson F. Storey and Bret J. ChisholmCite this: Macromolecules 1993, 26, 25, 6727–6733Publication Date (Print):December 1, 1993Publication History Published online1 May 2002Published inissue 1 December 1993https://pubs.acs.org/doi/10.1021/ma00077a006https://doi.org/10.1021/ma00077a006research-articleACS PublicationsRequest reuse permissionsArticle Views354Altmetric-Citations34LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
A Comparative evaluation of Intrnasal Dexmedetomidine, Midazolam and Ketamine for their sedative and analgesic properties: A Triple Blind Randomized Study (2014)

Dexmedetomidine, Midazolam and Ketamine, all the three drugs evaluated in the present study can be used safely and effectively through IN route in uncooperative pediatric dental patients for producing moderate sedation.
Characterization of a novel Mycobacterium bovis secreted antigen containing PGLTS repeats (1995)

Serum from naturally infected cattle was used to identify a novel Mycobacterium bovis antigen from an expression library. The first recombinant product identified was a fusion protein with lacZ (55 kDa). A clone containing the whole gene was also obtained. This clone expressed a 38-kDa protein. A rabbit serum against the recombinant antigen reacts in M. bovis supernatants with two proteins of 36 and 34 kDa. The new protein was called P36/P34. The gene cloned has a deduced amino acid sequence with a predicted molecular mass of 28 kDa, showing a characteristic signal sequence for exportation. The protein bears partial homology to a 28-kDa protein from M. leprae. An interesting feature of the P36/P34 sequence is that it contains several PGLTS repeats, which are not present in the M. leprae protein. Antigenic determinants seem also to be conserved between the two proteins because sera from leprosy patients recognized the recombinant M. bovis protein. The discrepancy among the molecular mass deduced from the sequence (28 kDa), that of the recombinant protein in Escherichia coli (38 kDa), and that of the native protein in M. bovis (36 and 34 kDa) could be attributed to posttranslational modifications or to the high proline content that may alter the migration properties of the protein. This antigen seems to be immunodominant during bovine tuberculosis, because 8 of 9 serum specimens from diseased cattle are reactive. The homology among the M. leprae 28-kDa protein, the protein described in this article, and a recently described M. tuberculosis protein suggests the existence of a new protein family in mycobacteria.
Designing audio aura (1998)

Article Free Access Share on Designing audio aura Authors: Elizabeth D. Mynatt Xerox Palo Alto Research Center Xerox Palo Alto Research CenterView Profile , Maribeth Back Xerox Palo Alto Research Center Xerox Palo Alto Research CenterView Profile , Roy Want Xerox Palo Alto Research Center Xerox Palo Alto Research CenterView Profile , Michael Baer Stanford University Stanford UniversityView Profile , Jason B. Ellis Georgia Institute of Technology Georgia Institute of TechnologyView Profile Authors Info & Claims CHI '98: Proceedings of the SIGCHI Conference on Human Factors in Computing SystemsJanuary 1998 Pages 566–573https://doi.org/10.1145/274644.274720Published:01 January 1998Publication History 104citation1,799DownloadsMetricsTotal Citations104Total Downloads1,799Last 12 Months159Last 6 weeks45 Get Citation AlertsNew Citation Alert added!This alert has been successfully added and will be sent to:You will be notified whenever a record that you have chosen has been cited.To manage your alert preferences, click on the button below.Manage my AlertsNew Citation Alert!Please log in to your account Save to BinderSave to BinderCreate a New BinderNameCancelCreateExport CitationPublisher SiteeReaderPDF
Multipotent stromal cells are activated to reduce apoptosis in part by upregulation and secretion of stanniocalcin-1 (2009)

Multipotent stromal cells (MSCs) have been shown to reduce apoptosis in injured cells by secretion of paracrine factors, but these factors were not fully defined.We observed that co-culture of MSCs with previously UV irradiated fibroblasts reduced apoptosis of the irradiated cells, but fresh MSC conditioned media was unable reproduce the effect.Comparative Microarray analysis of MSCs grown in the presence or absence of UV irradiated fibroblasts demonstrated that the MSCs were activated by the apoptotic cells to increase synthesis and secretion of stanniocalcin-1 (STC-1), a peptide hormone that modulates mineral metabolism and has pleiotrophic effects that have not been fully characterized.We showed that STC-1 was required but not sufficient for reduction of apoptosis of UV-irradiated fibroblasts.In contrast, we demonstrated that MSCderived STC-1 was both required and sufficient for reduction of apoptosis of lung cancer epithelial cells made apoptotic by incubation at low pH in hypoxia.Our data demonstrate that STC-1 mediates the anti-apoptotic effects of MSCs in two distinct models of apoptosis in vitro.
Knowledge Extraction with No Observable Data (2019)

Knowledge distillation is to transfer the knowledge of a large neural network into a smaller one and has been shown to be effective especially when the amount of training data is limited or the size of the student model is very small. To transfer the knowledge, it is essential to observe the data that have been used to train the network since its knowledge is concentrated on a narrow manifold rather than the whole input space. However, the data are not accessible in many cases due to the privacy or confidentiality issues in medical, industrial, and military domains. To the best of our knowledge, there has been no approach that distills the knowledge of a neural network when no data are observable. In this work, we propose KegNet (Knowledge Extraction with Generative Networks), a novel approach to extract the knowledge of a trained deep neural network and to generate artificial data points that replace the missing training data in knowledge distillation. Experiments show that KegNet outperforms all baselines for data-free knowledge distillation. We provide the source code of our paper in https://github.com/snudatalab/KegNet.
Antiviral activity of Australian tea tree oil and eucalyptus oil against herpes simplex virus in cell culture. (2001)

The antiviral effect of Australian tea tree oil (TTO) and eucalyptus oil (EUO) against herpes simplex virus was examined. Cytotoxicity of TTO and EUO was evaluated in a standard neutral red dye uptake assay. Toxicity of TTO and EUO was moderate for RC-37 cells and approached 50% (TC50) at concentrations of 0.006% and 0.03%, respectively. Antiviral activity of TTO and EUO against herpes simplex virus type 1 (HSV-1) and herpes simplex virus type 2 (HSV-2) was tested in vitro on RC-37 cells using a plaque reduction assay. The 50% inhibitory concentration (IC50) of TTO for herpes simplex virus plaque formation was 0.0009% and 0.0008% and the IC50 of EUO was determined at 0.009% and 0.008% for HSV-1 and HSV-2, respectively. Australian tea tree oil exhibited high levels of virucidal activity against HSV-1 and HSV-2 in viral suspension tests. At noncytotoxic concentrations of TTO plaque formation was reduced by 98.2% and 93.0% for HSV-1 and HSV-2, respectively. Noncytotoxic concentrations of EUO reduced virus titers by 57.9% for HSV-1 and 75.4% for HSV-2. Virus titers were reduced significantly with TTO, whereas EUO exhibited distinct but less antiviral activity. In order to determine the mode of antiviral action of both essential oils, either cells were pretreated before viral infection or viruses were incubated with TTO or EUO before infection, during adsorption or after penetration into the host cells. Plaque formation was clearly reduced, when herpes simplex virus was pretreated with the essential oils prior to adsorption. These results indicate that TTO and EUO affect the virus before or during adsorption, but not after penetration into the host cell. Thus TTO and EUO are capable to exert a direct antiviral effect on HSV. Although the active antiherpes components of Australian tea tree and eucalyptus oil are not yet known, their possible application as antiviral agents in recurrent herpes infection is promising.