gebhart/patrepeval huggingface dataset:
HIV and hemophilic children's growth. (1989)

The acquired immune deficiency syndrome (AIDS) often has profound effects on growth; however, the effects of human immunodeficiency virus (HIV) on asymptomatic children's growth are unknown. Before heat inactivation/HIV donor screening of factor concentrates, many hemophilic children became infected with HIV. We evaluated four hemophilic groups without AIDS, using age-standardized growth parameters: group 1, 41 HIV-seropositive children (median age of 13 years); group 2, 11 HIV-seronegative children (median age of 4 years); group 3, 20 children frequently receiving concentrates, evaluated before 1979 (median age of 9 years); and group 4, 11 children rarely receiving concentrates, evaluated before 1979 (median age of 6 years). Median height for age (HA), weight for age (WA), and weight for height (WH) of groups 1 and 2 exceeded the 50th percentile of referent norms. HA, WA, WH, and weight/height did not vary significantly by group, nor did these decline over periods of 11 to 70 months. However, for those less than 11 years of age in group 1, HA declined by 25 percentile points over at least a 3 year period. Also, group 1's T helper-to-suppressor cell ratios at 12 +/- 3 months following the latest growth evaluation were positively associated with both HA and WA at the last evaluation. Eight children were evaluated before 1979 and again after they seroconverted to HIV.(ABSTRACT TRUNCATED AT 250 WORDS)
An apertureless near-field microscope for fluorescence imaging (2000)

We describe an apertureless near field microscope for imaging fluorescent samples. Optical contrast is generated by exploiting fluorescent quenching near a metallized atomic force microscope tip. This microscope has been used to image fluorescent latex beads with subdiffraction limit resolution. The use of fluorescence allows us to prove that the contrast mechanism is indeed spectroscopic in origin.
Optimization of the Native Glucagon Sequence for Medicinal Purposes (2010)

Glucagon presents unique structural challenges to the identification of an analog of high biological activity and selectivity that also possesses sufficient aqueous solubility and stability such that it might be developed as a ready-to-use medicine. The glucagon analogs D28 and Cex demonstrated all of the chemical, physical, and biochemical properties supportive of further study as potential clinical candidates for treatment of hypoglycemia.
Transformation of human glioma cell lines with the p16 gene inhibits cell proliferation. (1997)

We examined the genomic status of the p16 gene in 5 human glioma cell lines by Southern blot analysis. The p16 gene was located in the 9p21 chromosomal region and homozygous deletion was detected in 4 of 5 (80%) human glioma cell lines and 5 of 15 (33%) clinical samples. We transfected the full-length human p16 gene into p16-null human glioma cell line, U251MG cells, using the plasmid vector pRc/CMV-p16 and evaluated the effect of p16 gene transfer on the growth suppression of malignant glioma cells. The transfection of p16 cDNA caused growth suppression through G1 cell cycle arrest in U251MG cells. We also examined the effect of p16 gene transfer on the chemosensitivity to cis-diamminedichloroplatinum II (CDDP), 1-(4-amino-2-methyl-5-pyrimidinyl)methyl-3-(2-chloroethyl) -3-nitrosourea hydrochloride (ACNU), and 5'-azacytidine (AZC). We did not detect any change in them after p16 gene transfer. These results might suggest that deletion of p16 genes promoted unrestrained growth in human glioma but has no relationship to the chemosensitivity to CDDP, ACNU and AZC.
The Pharmacological and Physiological Role of Cyclic GMP in Vascular Smooth Muscle Relaxation (1985)

Due to the massive data sets available for drug candidates, modern drug discovery has advanced to the big data era. Central to this shift is the development of artificial intelligence approaches to implementing innovative modeling based on the dynamic, ...Read More
CpG Methylation Modifies the Genetic Stability of Cloned Repeat Sequences (2002)

The genetic stability of tandemly repeated DNAs is affected by repeat sequence, tract length, tract purity, and replication direction. Alterations in DNA methylation status are thought to influence many processes of mutagenesis. By use of bacterial and primate cell systems, we have determined the effect of CpG methylation on the genetic stability of cloned di-, tri-, penta- and minisatellite repeated DNA sequences. Depending on the repeat sequence, methylation can significantly enhance or reduce its genetic stability. This effect was evident when repeat tracts were replicated from either direction. Unexpectedly, methylation of adjacent sequences altered the stability of contiguous repeat sequences void of methylatable sites. Of the seven repeat sequences investigated, methylation stabilized five, destabilized one, and had no effect on another. Thus, although methylation generally stabilized repeat tracts, its influence depended on the sequence of the repeat. The current results lend support to the notion that the biological consequences of CpG methylation may be affected through local alterations of DNA structure as well as through direct protein-DNA interactions. In vivo CpG methylation in bacteria may have technical applications for the isolation and stable propagation of DNA sequences that have been recalcitrant to isolation and/or analyses because of their extreme instability.
Corticotropin-Releasing Hormone Directly Activates Noradrenergic Neurons of the Locus Ceruleus RecordedIn Vitro (2004)

The neuropeptide corticotropin-releasing hormone (CRH) activates locus ceruleus (LC) neurons, thereby increasing norepinephrine levels throughout the CNS. Despite anatomical and physiological evidence for CRH innervation of the LC, the mechanism of CRH-evoked activation of LC neurons is unknown. Moreover, given the apparent absence of mRNA for CRH receptors in LC neurons, the exact location of action of CRH within the cerulear region is debated. Using in vitro intracellular recordings from rat brainstem, we examined whether CRH exerts a direct effect on LC neurons and which ionic currents are likely affected by CRH. We demonstrate that CRH dose-dependently increases the firing rate of LC neurons through a direct (TTX- and cadmium-insensitive) mechanism by decreasing a potassium conductance. The CRH-evoked activation of LC neurons is, at least in part, mediated by CRH 1 receptors and a cAMP-dependent second messenger system. These data provide additional support that CRH functions as an excitatory neurotransmitter in the LC and the hypothesis that dysfunction of the CRH peptidergic and noradrenergic systems observed in patients with mood and anxiety disorders are functionally related.
Efficacy and safety of alirocumab in high cardiovascular risk patients with inadequately controlled hypercholesterolaemia on maximally tolerated doses of statins: the ODYSSEY COMBO II randomized controlled trial (2015)

clinicaltrials.gov Identifier: NCT01644188.
Effect of 5-bromo-2-deoxyuridine on transport of deoxyglucose and cycloleucine in 3T6 fibroblasts. (1973)

When 3T6 mouse fibroblasts in culture are grown in the presence of 5-bromo-2-deoxyuridine (50 µg/ml), they reach a saturation density which is only 50% of the saturation density reached by untreated control 3T6 cells. The uptake of deoxyglucose-3H and of cycloleucine-14C is decreased in cells grown in the presence of 5-bromo-2-deoxyuridine. The uptake of deoxyglucose-3H is also decreased in 3T6 mouse fibroblasts grown in the absence of 5-bromo-2-deoxyuridine, when they are incubated with the radioactive compound in the presence of 5-bromo-2-deoxyuridine, 50 µg/ml. These results confirm and extend previous observations reported in the literature on the effect of 5-bromo-2-deoxyuridine on the function of membranes in mammalian cells.
Aortic annulus sizing: echocardiographic versus computed tomography derived measurements in comparison with direct surgical sizing (2012)

Both the 'effective' CT diameter and end-systolic TEE values are the most reliable approaches for preoperative aortic annulus sizing. In patients with a pronounced oval-shaped annulus, the 'effective' CT diameter seems to be the method of choice. Therefore, aortic annulus measurement using 'effective' CT diameters should be included into current recommendations for TAVI sizing.
What to do when SSRIs fail: eight strategies for optimizing treatment of panic disorder. (2002)

Selective serotonin reuptake inhibitors (SSRIs) are the drug of choice for treatment of patients with panic disorder. Most patients have a favorable response to SSRI therapy; however, 30 percent will not be able to tolerate these drugs or will have an unfavorable or incomplete response. Strategies to improve management of such patients include optimizing SSRI dosing (starting at a low dose and slowly increasing the dose to reach the target dose) and ensuring an adequate trial before switching to a different drug. Benzodiazepines should be avoided but, when necessary, may be used for a short duration or may be used long-term in patients for whom other treatments have failed. Slower-onset, longer-acting benzodiazepines are preferred. All patients should be encouraged to try cognitive behavior therapy. Augmentation therapy should be considered in patients who do not have a complete response. Drugs to consider for use in augmentation therapy include benzodiazepines, buspirone, beta blockers, tricyclic antidepressants, and valproate sodium.
Absorption, Reflectance, and Luminescence of GaN Epitaxial Layers (1971)

Low-temperature absorption, reflectance, and emission spectra from a wide range of epitaxially grown GaN are reported. The best samples, which are far superior to any previously available, have spectral details that allow a definitive analysis. The reflectance results prove that GaN is a direct-gap semiconductor with its lowest exciton state at 3.474 \ifmmode\pm\else\textpm\fi{} 0.002 eV at 2 K. The absorption and luminescence spectra corroborate this observation. Crystal field and spin-orbit splittings have been resolved. The order of the valence-band states is ${\ensuremath{\Gamma}}_{9}&gt;{\ensuremath{\Gamma}}_{7}&gt;{\ensuremath{\Gamma}}_{7}$ with parameters ${\ensuremath{\Delta}}_{\mathrm{cr}}=22\ifmmode\pm\else\textpm\fi{}2$ meV and ${\ensuremath{\Delta}}_{\mathrm{so}}={11}_{\ensuremath{-}2}^{+5}$ meV. A correlation of these results with the emission data has led us to an interpretation in which we associate emission features with LO-phonon-assisted free-exciton decay, with bound-exciton decay at both donor and acceptor sites, and with distant donor-acceptor pair recombination. Binding energies derived from these associations are consistent with values obtained from independent experiments reported earlier. The internal consistency of the absorption, reflectance, and luminescence results provides strong support for our interpretation.
An Overview of the Open Architecture Test System (2005)

An open architecture test system has been envisioned to address the re-usability of the test solutions. The open architecture provides a method and framework under which software and test instruments of different vendors can be developed and integrated into an automatic test equipment (ATE). The framework uses standard interfaces so that each modular unit (software or hardware) can be replaced with another modular unit from a different vendor. The basic structure of the Open Architecture Test System is described in this paper.
A unified method of designing low noise microwave oscillator (2006)

Oscillator/VCOs phase noise is an important concern in RF design. Transistor 1/f noise, base resistance thermal noise, resonator loss resistance noise, and the base and collector current shot noise can all contribute to the oscillator phase noise. The relevant importance of individual noise sources in determining the phase noise is examined. A method of minimizing the phase noise is developed, and demonstrated for high Q low noise Colpitt oscillator at 1 GHz.
Nonviral gene delivery: techniques and implications for molecular medicine (2003)

Medical research continues to illuminate the origins of many human diseases. Gene therapy has been widely proposed as a novel strategy by which this knowledge can be used to deliver new and improved therapies. Viral gene transfer is relatively efficient but there are concerns relating to the use of viral vectors in humans. Conversely, nonviral vectors appear safe but inefficient. Therefore, the development of an efficient nonviral vector remains a highly desirable goal. This review focuses on the numerous challenges preventing efficient nonviral gene transfer in vivo and discusses the many technologies that have been adopted to overcome these problems.
Molecular Cloning and Genetic Analysis of the Determinant for Gamma-Lysin, a Two-component Toxin of Staphylococcus aureus (1988)

The gamma-lysin determinant of Staphylococcus aureus strain Smith 5R has been cloned in phage lambda and plasmid vectors in Escherichia coli. Genetic evidence is presented which demonstrates that gamma-lysin requires the co-operative action of two polypeptides expressed by the closely linked hlgA and hlgB genes. Recombinants expressed haemolytic activity in agarose medium but not in agar, a known property of gamma-lysin. Haemolysis was inhibited by antiserum raised against the 32 kDa component of gamma-lysin, but not by anti-alpha-, anti-beta- or anti-delta-lysin serum. Subcloning and transposon Tn5 mutagenesis identified a 3.5 kb region which was necessary for gamma-lysin expression in E. coli. Two genes (hlgA and hlgB) were mapped and their polypeptide products identified. Non-haemolytic Tn5 mutants fell into two groups based upon complementation tests done between extracts of mutants in vitro and also between extracts of mutants and components of gamma-lysin purified from S. aureus culture supernates. Immunoblotting showed that some mutants in group A (defective in expression of hlgA) did not express a 32 kDa polypeptide which was synthesized by the parental haemolytic recombinant and by mutants in group B. Minicell analysis suggested that the products of the hlgB gene were proteins of 38 kDa and 36 kDa. The smaller molecule co-migrates with a protein in a fraction of the S. aureus culture supernate containing component B of gamma-lysin. The 38 kDa polypeptide is probably an unprocessed precursor. Southern hybridization demonstrated that the hlgA and hlgB genes are closely linked in the chromosome of several strains of S. aureus.
Nonspecific Protection of Mice against Influenza Virus Infection by Local or Systemic Immunization with Bacille Calmette-Guerin (1977)

Bacille Calmette-Guérin (BCG) has been used effectively to protect nonspecifically against bacterial infections and neoplasms, probably by enhancement of cell-mediated immunity. It has been suggested that cell-mediated immunity plays a role in the host defense against certain viral infections. In recent in vitro studies, macrophages from animals sensitized by BCG were more effective in lowering the titer of influenza virus than were macrophages from control animals. The purpose of this study was to investigate the in vivo effectiveness of nonspecific immune stimulation with BCG on influenza virus infection in mice. Immunization with BCG resulted in significant protection of mice. Also, the local (nasal) route of immunization was more effective than the systemic (intraperitoneal) route against the intranasal inoculum of virus, a finding which suggests that important role of local immunity, i.e., either earlier stimulation of secretory antibody or nonspecific cell-mediated immunity. The time course of the resistance ot infection suggests that interferon was not the protective mechanism.
Electromechanical Actuation with Controllable Motion Based on a Single-Walled Carbon Nanotube and Natural Biopolymer Composite (2010)

This paper reports novel electromechanical behavior for a natural biopolymer film due to the incorporation of a conductive carbon nanotube network. Through simple solution blending and casting, high weight fraction single-walled carbon nanotube-chitosan composite films were fabricated and exhibited electromechanical actuation properties with motion controlled by low alternating voltage stimuli in atmospheric conditions. Of particular interest and importance is that the displacement output imitated perfectly the electrical input signal in terms of frequency (<10 Hz) and waveform. Operational reliability was confirmed by stable vibration testing in air for more than 3000 cycles. Proposed electrothermal mechanism considering the alternating current-induced periodic thermal expansion and contraction of the composite film was discussed. The unique actuation performance of the carbon nanotube-biopolymer composite, coupled with ease of fabrication, low driven voltage, tunable vibration, reliable operation, and good biocompatibility, shows great possibility for implementation of dry actuators in artificial muscle and microsystems for biomimetic applications.
Droplet formation in a T-shaped microfluidic junction (2009)

Using a phase-field model to describe fluid/fluid interfacial dynamics and a lattice Boltzmann model to address hydrodynamics, two dimensional (2D) numerical simulations have been performed to understand the mechanisms of droplet formation in microfluidic T-junction. Although 2D simulations may not capture underlying physics quantitatively, our findings will help to clarify controversial experimental observations and identify new physical mechanisms. We have systematically examined the influence of capillary number, flow rate ratio, viscosity ratio, and contact angle in the droplet generation process. We clearly observe that the transition from the squeezing regime to the dripping regime occurs at a critical capillary number of 0.018, which is independent of flow rate ratio, viscosity ratio, and contact angle. In the squeezing regime, the squeezing pressure plays a dominant role in the droplet breakup process, which arises when the emerging interface obstructs the main channel. The droplet size depends on both the capillary number and the flow rate ratio, but is independent of the viscosity ratio under completely hydrophobic wetting conditions. In the dripping regime, the droplet size will be significantly influenced by the viscosity ratio as well as the built-up squeezing pressure. When the capillary number increases, the droplet size becomes less dependent on the flow rate ratio. The contact angle also affects the droplet shape, size, and detachment point, especially at small capillary numbers. More hydrophobic wetting properties are expected to produce smaller droplets. Interestingly, the droplet size is dependent on the viscosity ratio in the squeezing regime for less hydrophobic wetting conditions.
Down‐regulation of the LXR transcriptome provides the requisite cholesterol levels to proliferating hepatocytes† (2009)

Cholesterol homeostasis is critical for cellular proliferation. Liver X receptor (LXR) alpha and beta are the nuclear receptors responsible for regulation of cholesterol metabolism. In physiological conditions, high intracellular cholesterol levels cause increased synthesis of oxysterols, which activate LXR, thus triggering a transcriptional response for cholesterol secretion and catabolism. Here we employed a mouse model of partial hepatectomy (PH) to dissect the molecular pathways connecting cholesterol homeostasis, cellular proliferation, and LXR. First, we show that hepatic cholesterol content increases after PH, whereas the entire LXR transcriptome is down-regulated. Although LXR messenger RNA (mRNA) levels are unmodified, LXR target genes are significantly down-regulated on day 1 after PH and restored to control levels on day 7, when the liver reaches normal size. The inactivation of LXR following PH is related to the reduced oxysterol availability by way of decreased synthesis, and increased sulfation and secretion. On the contrary, cholesterol synthesis is up-regulated, and extracellular matrix remodeling is enhanced. Second, we show that reactivation of LXR by way of a synthetic ligand determines a negative modulation of hepatocyte proliferation. This effect is sustained by the reactivation of hepatic cholesterol catabolic and secretory pathways, coupled with a significant reduction of cholesterol biosynthesis. Our data unveil a previously unrecognized and apparently paradoxical scenario of LXR modulation. During liver regeneration LXR activity is abated in spite of increasing intracellular cholesterol levels. Turning off LXR-transcriptional pathways is crucial to guaranteeing the requisite intracellular cholesterol levels of regenerating hepatocytes. In line with this hypothesis, pharmacological LXR reactivation during PH significantly reduces liver regeneration capacity.
Strain Sensitivity and Transport Properties in Organic Field-Effect Transistors (2011)

We present the electromechanical characterization of organic field-effect transistors (OFETs) fabricated with different organic semiconductors. Pentacene- and poly(3-hexylthiophene-2,5-diyl) (P3HT)-based OFETs have been investigated as strain sensors, and a clear correlation between the structural and morphological properties of the active layer with the device sensitivity has been observed. The highly disordered structure of polymeric films, as P3HT, confirmed by morphological and structural investigations, gives rise to a dramatic reduction of the device response to mechanical stimuli. Nevertheless, an unambiguous, fast, and reproducible response has been obtained also for this material, which, being solution processible, represents a valuable solution for the fabrication of low-cost pressure sensors for a variety of innovative applications.
Analysis of Gene Mutations in Children With Cholestasis of Undefined Etiology (2010)

ABSTRACT Background: The discovery of genetic mutations in children with inherited syndromes of intrahepatic cholestasis allows for diagnostic specificity despite similar clinical phenotypes. Here, we aimed to determine whether mutation screening of target genes could assign a molecular diagnosis in children with idiopathic cholestasis. Patients and Methods: DNA samples were obtained from 51 subjects with cholestasis of undefined etiology and surveyed for mutations in the genes SERPINA1, JAG1, ATP8B1, ABCB11, and ABCB4 by a high‐throughput gene chip. Then, the sequence readouts for all 5 genes were analyzed for mutations and correlated with clinical phenotypes. Healthy subjects served as controls. Results: Sequence analysis of the genes identified 14 (or 27%) subjects with missense, nonsense, deletion, and splice site variants associated with disease phenotypes based on the type of mutation and/or biallelic involvement in the JAG1, ATP8B1, ABCB11 , or ABCB4 genes. These patients had no syndromic features and could not be differentiated by biochemical markers or histopathology. Among the remaining subjects, 10 (or ∼20%) had sequence variants in ATP8B1 or ABCB11 that involved only 1 allele, 8 had variants not likely to be associated with disease phenotypes, and 19 had no variants that changed amino acid composition. Conclusions: Gene sequence analysis assigned a molecular diagnosis in 27% of subjects with idiopathic cholestasis based on the presence of variants likely to cause disease phenotypes.