gebhart/patrepeval huggingface dataset:
Distribution, subcellular localization and ontogeny of ASIC1 in the mammalian central nervous system (2003)

The acid‐sensitive ion channel ASIC1 is a proton‐gated ion channel from the mammalian nervous system. Its expression in sensory neurons and activation by low extracellular pH suggest that ASIC is involved in transmitting nociceptive impulses produced by the acidification caused by injury or inflammation. However, ASIC1 expression is not restricted to sensory neurons. To understand the functional role of ASIC1 in the CNS we investigated its expression and subcellular distribution therein. In particular, we examined the presence of ASIC1 in domains where the local pH may drop sufficiently to activate ASIC1 under physiological conditions. Immunostaining with specific antibodies revealed broad expression of ASIC1 in many areas of the adult rat brain including the cerebral cortex, hippocampus and cerebellum. Within cells, ASIC1 was found predominantly throughout the soma and along the branches of axons and dendrites. ASIC1 was not enriched in the microdomains where pH may reach low values, such as in synaptic vesicles or synaptic membranes. Pre‐ or postsynaptic ASIC1 was not gated by synaptic activity in cultured hippocampal neurons. Blockage or desensitization of ASIC1 with amiloride or pH 6.7, respectively, did not modify postsynaptic currents. Finally, the ontogeny of ASIC1 in mouse brain revealed constant levels of expression of ASIC1 protein from embryonic day 12 to the postnatal period, indicating an early and almost constant level of expression of ASIC1 during brain development.
Growth of silicon sheets from metallurgical-grade silicon (1981)

Impure silicon is difficult to solidify in sheet form because of morphological proturberances which may result from constitutional supercooling. Sheet growth methods which require a specific crystallographic orientation or which are characterized by a narrow melt meniscus are most affected by this problem. The edge-supported pulling technique is applied to sheet growth of metallurgical grade silicon and DAR (Direct Arc Reactor) silicon. The 7mm meniscus height associated with this technique has allowed the growth of 5 cm wide sheets from both materials. In each case, the sheets were p-type. Metallurgical grade silicon resulted in .05 to .23 ..cap omega..-cm resistivities while DAR silicon produced .10 to .23 ..cap omega..-cm material. Constitutional supercooling occurred under some growth conditions with both materials and was sometimes severe enough to cause growth difficulties particularly with metallurgical grade silicon. The onset of morphological proturberance is sometimes triggered by ..beta..-SiC particles. Impurity characteristics are presented for the starting materials and for both smooth and constitutionally supercooled sheets. Also, relative concentrations of impurities in grain boundaries and in adjacent grains are given. Conventional diffused solar cells fabricated directly on the sheet attained antireflection coated AM1 efficiencies up to 6.3% for DAR metallurgical silicon and 3.4% for conventional metallurgical silicon. Other DAR cells achieved 4.7% AMO, non-AR coated efficiencies. Epitaxial layer solar cells achieved AM1, coated efficiencies up to 10.5% on DAR substrates and approximately 9% on conventional metallurgical substrates.
Tolcapone and Hepatotoxic Effects (2000)

Four patients with Parkinson disease have recently been described in whom severe hepatic dysfunction developed in association with tolcapone therapy. These reports led to the introduction of a "black box" warning and more intensive monitoring requirements in the United States. A review of these cases and all clinical trials indicates that liver dysfunction did not develop in any patient who had received monitoring of liver function according to the original prescribing information. Virtually all instances of liver enzyme abnormality and clinical liver dysfunction occurred within 6 months of initiating treatment. To assess the current role of tolcapone therapy in Parkinson disease, a panel of neurologists and hepatologists was convened. Consensus was reached with respect to the following: (1) Tolcapone is an effective agent in the treatment of patients with fluctuating Parkinson disease. (2) The risk of developing irreversible liver injury is negligible with appropriate monitoring. (3) It may be possible to reduce the frequency of monitoring after 6 months of treatment. (4) The requirement that tolcapone be withdrawn if liver enzymes are elevated above the upper limit of normal on a single occasion is unnecessarily restrictive. It was concluded that tolcapone, when used as an adjunct to levodopa, is an effective anti-parkinsonian agent and that less frequent monitoring after 6 months, with an action limit of 2 to 3 times the upper limit of normal, is sufficient to ensure safety in patients who are deriving benefit from the drug.
L-Glucose. A convenient synthesis from D-glucose (1984)

L-Glucose has been synthesized from D-glucose by a convenient method involving methyl 2,3-O-isopropylidene-β-D-gulo-furanosiduronic acid (6) as a key intermediate. Compound 6 was converted into L-glucono-1,5-lactone (8), which, by a selective reduction, afforded L-glucose (9).
Self-potentiation of Ligand-Toxin Conjugates Containing Ricin A Chain Fused with Viral Structures (1995)

A chimeric protein was obtained by fusing together the ricin toxin A chain (RTA) gene and a DNA fragment encoding the N terminus of protein G of the vesicular stomatitis virus. Chimeric RTA (cRTA) retained full enzymic activity in a cell-free assay, but was 10-fold less toxic against human leukemic cells than either native RTA (nRTA) or unmodified recombinant RTA (rRTA). However, conjugates made with cRTA and human transferrin (Tfn) showed 10-20-fold greater cell killing efficacy than Tfn-nRTA or Tfn-rRTA conjugates despite equivalent binding of the three conjugates to target tumor cells. As a consequence, by fusion of the KFT25 peptide to the RTA sequence, the specificity factor (i.e. the ratio between nonspecific and specific cytotoxicity) of Tfn-cRTA was increased 90-240 times with respect to those of Tfn-nRTA and Tfn-rRTA. cRTA interacted with phospholipid vesicles with 15-fold faster kinetics than nRTA at acidic pH. Taken together, our results suggest that the ability of vesicular stomatitis virus protein G to interact with cell membranes can be transferred to RTA to facilitate its translocation to the cell cytosol. Our strategy may serve as a general approach for potentiating the cytotoxic efficacy of antitumor immunotoxins.
Relations of endogenous anabolic hormones and physical activity to bone mineral density and lean body mass in elderly men (1994)

In aging independent men, low levels of testosterone are associated with demineralization of the skeleton. Immobility and under-weight are associated with the osteopenia of old men residing in nursing homes. In this cross-sectional study of elderly men, there was no evidence of a relation of the somatotrophic axis to bone status or LBM, or of the gonadotrophic axis to LBM.
Toxic heavy metal – Pb, Cd, Sn – complexation by the octadentate hydroxypyridinonate ligand archetype 3,4,3-LI(1,2-HOPO) (2018)

The toxicity of heavy metals such as lead (Pb), cadmium (Cd) and tin (Sn) has long been known but accidental exposures of large populations to these elements remain unfortunately a topical issue.
Glycolipids of Recent Clinical Isolates of Mycobacterium tuberculosis: Chemical Characterization and Immunoreactivity (1989)

Five distinct glycolipids were readily detected in isolates of Mycobacterium tuberculosis. Spectroscopic methods and chemical degradation techniques allowed the structural identification of four of these glycolipids. The specific phenolic glycolipid antigen previously characterized from the Canetti strain was found in all the strains examined, with identical structural features (triglycosyl phenol phthiocerol dimycocerosate). The other three glycolipids identified were acylated trehaloses: penta-acyl trehalose (containing phthienoyl substituents), tetra-acyl trehalose 2'-sulphate (with C40-C50 hydroxyphthioceranoyl substituents) and diacyl trehalose 2'-sulphate (with C16 and C18 substituents). The two latter glycolipids as well as the phenolic glycolipid immunoreacted with whole-cell antiserum, indicating their surface location. The occurrence of these glycolipid antigens in recent clinical isolates suggests their possible utilization in the serodiagnosis of tuberculosis and the rapid identification of M. tuberculosis with specific antisera.
Optoelectronic Properties Of GaN, AlGaN And AlGaN-GaN Quantum Well Heterostructures (1993)

The dramatic advances in wide bandgap semiconductors since the mid 1980s have been driven by new developments in growth processes, new requirements for high power and high temperature operation and radiation hardness, and the desire for blue and ultraviolet optoelectronic devices. AlxGal-xN has a direct bandgap (3.4-6.2eV), a large and sharp optical absorption edge, a large radiative recombination coefficient, and is quite hard and stable in chemical environments and at elevated temperatures. Challenges in the continued development of the AlGaN material system are the lack of a native substrate, high n-type camer concentrations in epitaxial films and controlled p-doping. In this paper we describe the optical properties that have been achieved with MOCVD grown AlGaN on sapphire substrates and the diffusion of zinc into these GaN epitaxial layers.
The crystal structure of dipeptidyl peptidase IV (CD26) reveals its functional regulation and enzymatic mechanism (2003)

The membrane-bound glycoprotein dipeptidyl peptidase IV (DP IV, CD26) is a unique multifunctional protein, acting as receptor, binding and proteolytic molecule. We have determined the sequence and 1.8 A crystal structure of native DP IV prepared from porcine kidney. The crystal structure reveals a 2-2-2 symmetric tetrameric assembly which depends on the natively glycosylated beta-propeller blade IV. The crystal structure indicates that tetramerization of DP IV is a key mechanism to regulate its interaction with other components. Each subunit comprises two structural domains, the N-terminal eight-bladed beta-propeller with open Velcro topology and the C-terminal alpha/beta-hydrolase domain. Analogy with the structurally related POP and tricorn protease suggests that substrates access the buried active site through the beta-propeller tunnel while products leave the active site through a separate side exit. A dipeptide mimicking inhibitor complexed to the active site discloses key determinants for substrate recognition, including a Glu-Glu motif that distinguishes DP IV as an aminopeptidase and an oxyanion trap that binds and activates the P(2)-carbonyl oxygen necessary for efficient postproline cleavage. We discuss active and nonactive site-directed inhibition strategies of this pharmaceutical target protein.
EDP-420, a Bicyclolide (Bridged Bicyclic Macrolide), Is Active against Mycobacterium avium (2007)

Infection caused by Mycobacterium avium complex (MAC) is common in patients with immunosuppression, such as AIDS, and deficiencies of gamma interferon and interleukin-12, as well as patients with chronic lung diseases. Treatment of MAC disease is limited since few drugs show in vivo activity. We tested a new bridged bicyclic macrolide, EDP-420, against MAC in vitro and in beige mice. EDP-420 was inhibitory in vitro at a concentration ranging from 2 to 8 microg/ml (MIC(50) of 4 microg/ml and MIC(90) of 8 microg/ml). In macrophages, EDP-420 was inhibitory at 0.5 microg/ml, suggesting that the drug concentrates intracellularly. Mice infected with macrolide-susceptible MAC strain 101 were given 100 mg of EDP-420/kg of body weight daily for 4 weeks and showed a significant reduction in the number of bacteria in both liver and spleen which was greater than the reduction observed with clarithromycin treatment at the same dose (P < 0.05). However, macrolide-resistant MAC 101 did not respond to EDP-420 treatment. A combination of EDP-420 with mefloquine was shown to be indifferent; mefloquine alone was active against macrolide-resistant MAC. The frequency of resistance to EDP-420 in MAC 101 was 10(-9), which is significantly less than the emergence of resistance to clarithromycin, approximately 10(-7) (P < 0.05). Further evaluation of EDP-420 in the treatment of MAC disease is warranted.
Vaccination against malaria with live parasites (2006)

Despite nearly 80 years of vaccine research and control efforts, malaria remains one of the most prevalent of all infectious diseases. The fact that people living in regions in which malaria is endemic eventually develop immunity to the parasite and the disease suggest that it might be possible to develop vaccines against malaria. Although few vaccination trials were conducted with whole parasites, the only protocol that leads to the induction of sterile immunity in humans relies on immunization with attenuated parasites. This observation has spurred the search for subunit vaccines that aim to reproduce this protection. As yet, none of the current candidate subunit vaccines have achieved complete protection reproducibly. This failure, coupled with the recent advent of the genetically modified Plasmodium parasites, has led to a renewed interest in the use of live parasites for vaccination. This article reviews past studies, summarizes recent developments in this field and discusses the challenges to be overcome before mass immunization with live parasites could be envisaged.
On the Equivalence between Herding and Conditional Gradient Algorithms (2012)

We show that the herding procedure of Welling (2009) takes exactly the form of a standard convex optimization algorithm--namely a conditional gradient algorithm minimizing a quadratic moment discrepancy. This link enables us to invoke convergence results from convex optimization and to consider faster alternatives for the task of approximating integrals in a reproducing kernel Hilbert space. We study the behavior of the different variants through numerical simulations. The experiments indicate that while we can improve over herding on the task of approximating integrals, the original herding algorithm tends to approach more often the maximum entropy distribution, shedding more light on the learning bias behind herding.
The Cauliflower Mosaic Virus 35 S Promoter: Combinatorial Regulation of Transcription in Plants (1990)

Appropriate regulation of transcription in higher plants requires specific cis elements in the regulatory regions of genes and their corresponding trans-acting proteins. Analysis of the cauliflower mosaic virus (CaMV) 35S promoter has contributed to the understanding of transcriptional regulatory mechanisms. The intact 35S promoter confers constitutive expression upon heterologous genes in most plants. Dissection into subdomains that are able to confer tissue-specific gene expression has demonstrated that the promoter has a modular organization. When selected subdomains are combined, they confer expression not detected from the isolated subdomains, suggesting that synergistic interactions occur among cis elements. The expression patterns conferred by specific combinations of 35S subdomains differ in tobacco and petunia. This indicates that a combinatorial code of cisregulatory elements may be interpreted differently in different species.
Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis (2003)

The complete genome sequence of Enterococcus faecalis V583, a vancomycin-resistant clinical isolate, revealed that more than a quarter of the genome consists of probable mobile or foreign DNA. One of the predicted mobile elements is a previously unknown vanB vancomycin-resistance conjugative transposon. Three plasmids were identified, including two pheromone-sensing conjugative plasmids, one encoding a previously undescribed pheromone inhibitor. The apparent propensity for the incorporation of mobile elements probably contributed to the rapid acquisition and dissemination of drug resistance in the enterococci.
Cancer immunotherapeutic potential of novel small molecule TLR7 and TLR8 agonists (2009)

Toll-like receptor (TLR)-mediated signaling is proposed as an immunotherapeutic target against tumorigenesis. Natural killer (NK) cells play a critical role in host defense against tumors. Specifically, formation of tumor metastasis in various organs can be suppressed by the local activity of NK cells. In this study, we present a novel TLR7 agonist (termed SC-1) that induces pro-inflammatory cytokines in human blood cells, activates NK cell function, and is highly efficient in preventing lung metastases in a pulmonary metastatic Renca model. Furthermore, a second compound (termed SC-2), acting as dual-specific TLR7 and TLR8 agonist, was evaluated with respect to its immunostimulatory and NK cell-activating capacities. The release of pro-inflammatory cytokines was shown to be even more pronounced with this compound. Additional experiments showed a significant up-regulation of activation marker CD69 on NK cells and increased cytolytic activity of peripheral blood cells compared to the effect of a monospecific TLR7 agonist SC-1. Normally, TLR7 and TLR8 are expressed on different immune cell subpopulations. TLR7 expression on antigen-presenting cells is detected in plasmacytoid dendritic cells, CD34+-derived dendritic cells, and B-cells, whereas TLR8 is mainly expressed on cells of the myeloid lineage, such as monocytes, macrophages, and myeloid dendritic cells. Therefore, a compound that activates both TLR7 and TLR8 would result in a highly efficient immune system activation and may give rise to an enhanced anti-tumor activity in vivo compared to that elicited by a monospecific TLR7 agonist.
Proliferation of Neuronal Precursor Cells from the Central Nervous System in Culture (1994)

Studies over the past ten years have revealed that neuronal precursors from the central nervous system of chick, rat and mouse embryos are able to divide in culture and that their proliferation is enhanced by several nervous tissue extracts as well as by growth factors, hormones and various other molecules. In this article we present an overview of this subject. It has been found that neuronal precursors from chick embryo cerebral hemispheres proliferate in culture during the first week and that those from 6 day-old chick embryos possess the highest proliferative activity. Neuronal precursors from fetal rat cerebral cortex and spinal cord can also proliferate in vitro. The highest proliferative activity was observed between 24 and 48 h. Brain and meningeal extracts have been shown to stimulate the proliferation of chick neuroblasts. Moreover, RNAs, purine nucleotides, purine bases and transferrin present in these extracts are able to reinduce the proliferation of these cells. Other investigations have indicated that several hormones and growth factors stimulate the proliferation of rat and mouse neuronal precursors. Acidic and basic fibroblast growth factors are potent mitogens for these cells. Nerve growth factor, epidermal growth factor and insulin-like growth factor also affect the growth of the neuroblasts. The reported in vitro observations are discussed in relation to the physiological role of these molecules during neuronal proliferation in brain development.
DIMENSIONAL PROBING OF THE ATP BINDING SITE ON FIREFLY LUCIFERASE (1982)

Abstract— lin ‐Benzoadenosine 5′‐triphosphate has been shown to be an acceptable substrate for light production in the firefly luciferase‐luciferin system. This nucleotide analogue displays strong enzyme binding and a reduced rate of enzyme catalysis compared with ATP. Variation in the color of the bioluminescence emission with /in‐benzo‐ATP compared with ATP suggests that a lateral extension in the purine base induces a change in the conformation of the luciferase and in the environment of the excited light emitter.
Antioxidant activity of β‐carotene‐related carotenoids in solution (1989)

The effect of the antioxidant activity of beta-carotene and related carotenoids on the free radical-oxidation of methyl linoleate in solution was examined by measuring the production of methyl linoleate hydroperoxides. Canthaxanthin and astaxanthin which possess oxo groups at the 4 and 4'-positions in the beta-ionone ring retarded the hydroperoxide formation more efficiently than beta-carotene and zeaxanthin which possess no oxo groups. The rates of autocatalytic oxidation of canthaxanthin and astaxanthin were also slower than those of beta-carotene and zeaxanthin. These results suggest that canthaxanthin and astaxanthin are more effective antioxidants than beta-carotene by stabilizing the trapped radicals.
Battery Charge Depletion Prediction on an Electric Aircraft (2013)

&#x0D; &#x0D; &#x0D; Validation of prognostic technologies through ground and flight tests is an important step in maturing these novel technologies and deploying them on real-world systems. To this end, a series of flight tests have been conducted using an un- manned electric vehicle during which the motor system batteries were monitored by a prognostic algorithm. The research presented here endeavors to produce and validate a technology for predicting the remaining time until end-of- discharge of the batteries on an electric aircraft as a function of an expected future flight and online estimates of the charge contained in the batteries. Flight data and flight experiment results are presented along with an assessment of model and algorithm performance.&#x0D; &#x0D; &#x0D;
Laser light scattering study of polyacrylamide gels (1987)

Abstract Laser light scattering experiments with polyacrylamide gels containing diffusing bovine plasma albumin are described. Complete heterodyne beating has not been assumed, and an account is given of a novel method for finding the degree of spectral broadening by scanning angles of scatter while measuring the temporal autocorrelation function. Results obtained by this method for polyacrylamide gels and un‐cross‐linked solutions in the absence of diffusing protein, are compared with those of other authors. In the presence of the protein there is a complex interaction between the diffusion coefficient of the protein and the coefficient associated with the diffusing fluctuations in segment density of polyacrylamide. The diffusing protein dominates at low gel concentrations, and the gel density fluctuations dominates at high gel concentrations. It is proposed that the protein preferentially occupies the less dense regions of the gel, so that at low gel concentrations, where it diffuses faster than the gel fluctuations, it tends to cancel them out, whereas at high gel concentrations where the protein is highly impeded by the gel structure, it tends to be carried along by the gel density fluctuations.