gebhart/patrepeval huggingface dataset:
Sodium telluride in N-methyl-2-pyrrolidone. Reduction of aromatic carbonyl compounds to alcohols and formation of pyrrolo[2,3-d]pyrimidines (7-deaza-9H-purines) from aromatic nitriles (1993)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSodium telluride in N-methyl-2-pyrrolidone. Reduction of aromatic carbonyl compounds to alcohols and formation of pyrrolo[2,3-d]pyrimidines (7-deaza-9H-purines) from aromatic nitrilesHitomi Suzuki and Tohru NakamuraCite this: J. Org. Chem. 1993, 58, 1, 241–244Publication Date (Print):January 1, 1993Publication History Published online1 May 2002Published inissue 1 January 1993https://doi.org/10.1021/jo00053a044RIGHTS & PERMISSIONSArticle Views269Altmetric-Citations23LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (474 KB) Get e-Alerts Get e-Alerts
Extension of chronological life span in yeast by decreased TOR pathway signaling (2006)

Chronological life span (CLS) in Saccharomyces cerevisiae, defined as the time cells in a stationary phase culture remain viable, has been proposed as a model for the aging of post-mitotic tissues in mammals. We developed a high-throughput assay to determine CLS for approximately 4800 single-gene deletion strains of yeast, and identified long-lived strains carrying mutations in the conserved TOR pathway. TOR signaling regulates multiple cellular processes in response to nutrients, especially amino acids, raising the possibility that decreased TOR signaling mediates life span extension by calorie restriction. In support of this possibility, removal of either asparagine or glutamate from the media significantly increased stationary phase survival. Pharmacological inhibition of TOR signaling by methionine sulfoximine or rapamycin also increased CLS. Decreased TOR activity also promoted increased accumulation of storage carbohydrates and enhanced stress resistance and nuclear relocalization of the stress-related transcription factor Msn2. We propose that up-regulation of a highly conserved response to starvation-induced stress is important for life span extension by decreased TOR signaling in yeast and higher eukaryotes.
Aβ Species Removal After Aβ42Immunization (2006)

Neuropathologic examination of 3 patients with Alzheimer disease in the Elan Pharmaceuticals trial using antibodies specific for different Abeta species showed in one case, 4 months after the immunization, evidence of a stage of active plaque clearance with "moth-eaten" plaques and abundant Abeta phagocytosis by microglia. At 1 to 2 years after immunization, 2 cases showed extensive areas cleared of plaques (69% and 86% of the temporal cortex was plaque-free). Cortex cleared of plaques in all 3 cases had a characteristic constellation of features, including a very low plaque burden, sparse residual dense plaque cores, and phagocytosed Abeta within microglia. There was resolution of tau-containing dystrophic neurites, although other features of tau pathology (tangles and neuropil threads) remained and cerebral amyloid angiopathy persisted. Although most antibodies generated by Abeta42 immunization in humans bind the intact N-terminus, immunohistochemistry with specific antibodies showed clearance of all major species of Abeta (Abeta40, Abeta42, and N-terminus truncated Abeta). Abeta immunotherapy can clear all Abeta species from the cortex. However, if it is to be used for treatment of established Alzheimer disease, then the residual tau pathology and cerebral amyloid angiopathy require further study.
Fast algorithm for finite-length MMSE equalizers with application to discrete multitone systems (1999)

This paper presents a new, fast algorithm for finite-length minimum mean square error (MMSE) equalizers. The research exploits the asymptotic equivalence of Toeplitz and circulant matrices to estimate the Hessian matrix of a quadratic form. Research shows that the Hessian matrix exhibits a specific structure. As a result, when combined with the Rayleigh minimization algorithm, it provides an efficient method to obtain the global minimum of constrained optimization problem. A salient feature of this algorithm is that extreme eigenvector of the Hessian matrix can be obtained without direct computation of the matrix. In comparison to the previous methods, the algorithm is more computationally efficient and highly parallelizable, which makes the algorithm more attractive for real time applications. The algorithm is applied for equalization of discrete multitone (DMT) systems for asynchronous digital subscriber line (ADSL) applications.
Lidocaine 20% patch vs lidocaine 5% gel for topical anaesthesia of oral mucosa (2008)

Good pain control can reduce the patients' anxiety level--expressed in heart rate--at the second appointment. The patch and gel seem to provide similar pain reduction at needle stick and injection of local anaesthetics.
Recent Advances in Biosensor Technology for Potential Applications – An Overview (2016)

Imperative utilization of biosensors has acquired paramount importance in the field of drug discovery, biomedicine, food safety standards, defense, security, and environmental monitoring. This has led to the invention of precise and powerful analytical tools using biological sensing element as biosensor. Glucometers utilizing the strategy of electrochemical detection of oxygen or hydrogen peroxide using immobilized glucose oxidase electrode seeded the discovery of biosensors. Recent advances in biological techniques and instrumentation involving fluorescence tag to nanomaterials have increased the sensitive limit of biosensors. Use of aptamers or nucleotides, affibodies, peptide arrays, and molecule imprinted polymers provide tools to develop innovative biosensors over classical methods. Integrated approaches provided a better perspective for developing specific and sensitive biosensors with high regenerative potentials. Various biosensors ranging from nanomaterials, polymers to microbes have wider potential applications. It is quite important to integrate multifaceted approaches to design biosensors that have the potential for diverse usage. In light of this, this review provides an overview of different types of biosensors being used ranging from electrochemical, fluorescence tagged, nanomaterials, silica or quartz, and microbes for various biomedical and environmental applications with future outlook of biosensor technology.
Unscheduled expression of cyclins D1 and D3 in human tumour cell lines (1996)

D-type cyclins are involved in regulation of cell traverse through G1 primarily by activating the cyclin-dependent kinase 4 (CDK4) and targeting it to the retinoblastoma tumour suppressor protein. There is a vast body of evidence that defective expression of D-type cyclins is associated with tumour development and/or progression. Immunocytochemical detection of D cyclins combined with multiparameter flow cytometry makes it possible to measure the expression of these proteins in individual cells in relation to their cell cycle position without the need for cell synchronization. This approach was used in the present study to compare the cell cycle phase specific expression of cyclins D3 and D1 in human normal proliferating lymphocytes and fibroblasts, respectively, with nine tumour cell lines of different lineage. During exponential, unperturbed growth, expression of cyclin D1 in fibroblasts from donors of different age, or cyclin D3 in lymphocytes, was limited to mid-G1 cells: Less than 7% of the cells entering S phase or progressing through S and G2 were cyclin D positive. In contrast, expression of either cyclin D1 or cyclin D3 in tumour cell lines of different lineage was not limited to G1 phase. Namely, over 80% of the cells in S and G2+M were cyclin D positive in eight of the nine cell lines studied. The data indicate that while expression of cyclin D1 or D3 in normal cells is discontinuous, occurring transiently in G1, these proteins are expressed in some tumour lines persistently throughout the cell cycle. This suggests that the partner kinase CDK4 is perpetually active throughout the cell cycle in these tumour lines.
Single-nucleotide polymorphisms can cause different structural folds of mRNA (1999)

Single-nucleotide polymorphisms (SNPs) are the most common type of genetic variation in man. Genes containing one or more SNPs can give rise to two or more allelic forms of mRNAs. These mRNA variants may possess different biological functions as a result of differences in primary or higher order structures that interact with other cellular components. Here we report the observation of marked differences in mRNA secondary structure associated with SNPs in the coding regions of two human mRNAs: alanyl tRNA synthetase and replication protein A, 70-kDa subunit (RPA70). Enzymatic probing of SNP-containing allelic fragments of the mRNAs revealed pronounced allelic differences in cleavage pattern at sites 14 or 18 nt away from the SNP, suggesting that a single-nucleotide variation can give rise to different mRNA folds. By using phosphorothioate oligodeoxyribonucleotides complementary to the region of different allelic structures in the RPA70 mRNA, but not extending to the SNP itself, we find that the SNP exerts an allele-specific effect on the accessibility of its flanking site in the endogenous human RPA70 mRNA. This further supports the allele-specific structural features identified by enzymatic probing. These results demonstrate the contribution of common genetic variation to structural diversity of mRNA and suggest a broader role than previously thought for the effects of SNPs on mRNA structure and, ultimately, biological function.
Recombinant Human Transforming Growth Factor Beta 3 Accelerates Gastric Ulcer Healing in Rats (1997)

Local and systemic TGF-beta 3 treatment accelerates gastric ulcer healing in rats.
Germline Stem Cells Anchored by Adherens Junctions in the Drosophila Ovary Niches (2002)

How stem cells are recruited to and maintained in their niches is crucial to understanding their regulation and use in regenerative medicine. Here, we demonstrate that DE-cadherin-mediated cell adhesion is required for anchoring germline stem cells (GSCs) in their niches in the Drosophila ovary. Two major components of this adhesion process, DE-cadherin and Armadillo/beta-catenin, accumulate at high levels in the junctions between GSCs and cap cells, one of the niche components. Removal of these proteins from GSCs results in stem cell loss. Furthermore, DE-cadherin is required for recruiting GSCs to their niche. Our study demonstrates that anchorage of GSCs in their niche by DE-cadherin-mediated adhesion is important for stem cell maintenance and function.
Increased Antibiotic Resistance ofEscherichia coliin Mature Biofilms (2009)

Biofilms are considered to be highly resistant to antimicrobial agents. Several mechanisms have been proposed to explain this high resistance of biofilms, including restricted penetration of antimicrobial agents into biofilms, slow growth owing to nutrient limitation, expression of genes involved in the general stress response, and emergence of a biofilm-specific phenotype. However, since combinations of these factors are involved in most biofilm studies, it is still difficult to fully understand the mechanisms of biofilm resistance to antibiotics. In this study, the antibiotic susceptibility of Escherichia coli cells in biofilms was investigated with exclusion of the effects of the restricted penetration of antimicrobial agents into biofilms and the slow growth owing to nutrient limitation. Three different antibiotics, ampicillin (100 microg/ml), kanamycin (25 microg/ml), and ofloxacin (10 microg/ml), were applied directly to cells in the deeper layers of mature biofilms that developed in flow cells after removal of the surface layers of the biofilms. The results of the antibiotic treatment analyses revealed that ofloxacin and kanamycin were effective against biofilm cells, whereas ampicillin did not kill the cells, resulting in regrowth of the biofilm after the ampicillin treatment was discontinued. LIVE/DEAD staining revealed that a small fraction of resistant cells emerged in the deeper layers of the mature biofilms and that these cells were still alive even after 24 h of ampicillin treatment. Furthermore, to determine which genes in the biofilm cells are induced, allowing increased resistance to ampicillin, global gene expression was analyzed at different stages of biofilm formation, the attachment, colony formation, and maturation stages. The results showed that significant changes in gene expression occurred during biofilm formation, which were partly induced by rpoS expression. Based on the experimental data, it is likely that the observed resistance of biofilms can be attributed to formation of ampicillin-resistant subpopulations in the deeper layers of mature biofilms but not in young colony biofilms and that the production and resistance of the subpopulations were aided by biofilm-specific phenotypes, like slow growth and induction of rpoS-mediated stress responses.
Steric Effects in Metathesis and Reduction Reactions of Phosphinimines with Catechol- and Pinacolboranes (2005)

A series of catecholboryl-phosphinimide complexes with the general formula (mu-(R(3)PN)Bcat)(x)() (cat = O(2)C(6)H(4)) have been synthesized via associative metathetical reactions. For R = Et, n-Bu, Ph, and i-Pr and R(3) = n-Bu t-Bu(2) X-ray crystallography as well as solution NMR spectroscopy and reactivity studies reveal that these species are dimeric. In the case of R = t-Bu, the steric congestion results in the monomeric species, t-Bu(3)PNBcat. Similarly, reactions of R(t-Bu)(2)PNH (R = n-Bu, t-Bu) and i-Pr(3)PNH with pinacolborane (HBO(2)C(2)Me(4) = HBpin) led to the formation of n-Bu(t-Bu(2))PNBpin, t-Bu(3)PNBpin, and i-Pr(3)PNBpin. Analogous reactions of smaller phosphinimines R(3)PNH (R = Et or n-Bu) with pinacolborane (HBpin) generated free phosphine and the boron-containing product HN(Bpin)(2). In the related reactions of R(3)PNPh or R(3)PNAd (R = Et and n-Bu) and HBpin, the white crystalline solids PhHN(Bpin) or AdHN(Bpin) were isolated. HN(Bpin)(2) was also derived from the reaction of Et(3)PNSiMe(3) and HBpin. Kinetic studies showed this reaction is first order in both reagents with a rate constant of 1.3(7) x 10(-4) s(-1). A mechanism involving a 1:1 donor-acceptor interaction of the phosphinimine and borane affording reduction of the phosphinimine to phosphine with concurrent formation of borylamine is proposed. Computational studies were performed to probe the steric effects on these reactions of phosphinimine and borane. Model reactions involving t-Bu(3)PNH showed a lower activation barrier for protonolysis in comparison to phosphinimine reduction. In contrast, for the smaller phosphinimine H(3)PNH, the activation barriers for phosphinimine reduction are lower. The causes of these steric effects are considered.
Digital imaging of cephalometric radiography, Part 1: Advantages and limitations of digital imaging. (1996)

Digital imaging has several potential advantages over traditional cephalometry. These include storage, transmission, and enhancement of images, reduced exposure to radiation for patients, and the possibility of automated cephalometric analysis. This paper outlines some of these advantages, discusses the limitations of digital imaging and suggests possible future developments.
High-efficiency synthesis of human alpha-endorphin and magainin in the erythrocytes of transgenic mice: a production system for therapeutic peptides. (1994)

Chemical synthesis of peptides, though feasible, is hindered by considerations of cost, purity, and efficiency of synthesizing longer chains. Here we describe a transgenic system for producing peptides of therapeutic interest as fusion proteins at low cost and high purity. Transgenic hemoglobin expression technology using the locus control region was employed to produce fusion hemoglobins in the erythrocytes of mice. The fusion hemoglobin contains the desired peptides as an extension at the C end of human alpha-globin. A protein cleavage site is inserted between the C end of the alpha-globin chain and the N-terminal residue of the desired peptide. The peptide is recovered after cleavage of the fusion protein with enzymes that recognize this cleavage signal as their substrate. Due to the selective compartmentalization of hemoglobin in the erythrocytes, purification of the fusion hemoglobin is easy and efficient. Because of its compact and highly ordered structure, the internal sites of hemoglobin are resistant to protease digestion and the desired peptide is efficiently released and recovered. The applicability of this approach was established by producing a 16-mer alpha-endorphin peptide and a 26-mer magainin peptide in transgenic mice. Transgenic animals and their progeny expressing these fusion proteins remain health, even when the fusion protein is expressed at > 25% of the total hemoglobin in the erythrocytes. Additional applications and potential improvements of this methodology are discussed.
Improving scalability of event-driven distributed objects architectures (2000)

The goal of this paper is to present practical techniques for improving the scalability of a distributed objects architecture built around an event-driven paradigm and the evaluation of their effectiveness in the case of location systems. As a case study, the ABng location system constructed using a publisher/subscriber pattern over a CORBA compliant middleware is presented. The main contribution of this paper is the elaboration and evaluation of three main concepts that play a crucial role in improving the scalability of event-driven architectures: events dissemination quality of service, notification tree based events-routing, and transparent multicast event-channel notification service. The applicability and efficiency of these techniques have been verified in practice by the ABng system implementation and performance testing. Copyright © 2000 John Wiley & Sons, Ltd.
Inhibition of poly (ADP-ribose) Synthetase Attenuates Neutrophil Recruitment and Exerts Antiinflammatory Effects (1997)

A cytotoxic cycle triggered by DNA single-strand breakage and poly (ADP-ribose) synthetase activation has been shown to contribute to the cellular injury during various forms of oxidant stress in vitro. The aim of this study was to investigate the role of poly (ADP-ribose) synthetase (PARS) in the process of neutrophil recruitment and in development of local and systemic inflammation. In pharmacological studies, PARS was inhibited by 3-aminobenzamide (10-20 mg/kg) in rats and mice. In other sets of studies, inflammatory responses in PARS-/- mice were compared with the responses in corresponding wild-type controls. Inhibition of PARS reduced neutrophil recruitment and reduced the extent of edema in zymosan- and carrageenan-triggered models of local inflammation. Moreover, inhibition of PARS prevented neutrophil recruitment, and reduced organ injury in rodent models of inflammation and multiple organ failure elicited by intraperitoneal injection of zymosan. Inhibition of PARS also reduced the extent of neutrophil emigration across murine mesenteric postcapillary venules. This reduction was due to an increased rate of adherent neutrophil detachment from the endothelium, promoting their reentry into the circulation. Taken together, our results demonstrate that PARS inhibition reduces local and systemic inflammation. Part of the antiinflammatory effects of PARS inhibition is due to reduced neutrophil recruitment, which may be related to maintained endothelial integrity.
Foundations of Cost-Effectiveness Analysis for Health and Medical Practices (1977)

Limits on health-care resources mandate that resource-allocation decisions be guided by considerations of cost in relation to expected benefits. In cost-effectiveness analysis, the ratio of net health-care costs to net health benefits provides an index by which priorities may be set. Quality-of-life concerns, including both adverse and beneficial effects of therapy, may be incorporated in the calculation of health benefits as adjustments to life expectancy. The timing of future benefits and costs may be accounted for by the appropriate use of discounting. Current decisions must inevitably be based on imperfect information, but sensitivity analysis can increase the level of confidence in some decisions while suggesting areas where further research may be valuable in guiding others. Analyses should be adaptable to the needs of various health-care decision makers, including planners, administrators and providers.
Redefining endothelial progenitor cells via clonal analysis and hematopoietic stem/progenitor cell principals (2006)

The limited vessel-forming capacity of infused endothelial progenitor cells (EPCs) into patients with cardiovascular dysfunction may be related to a misunderstanding of the biologic potential of the cells. EPCs are generally identified by cell surface antigen expression or counting in a commercially available kit that identifies "endothelial cell colony-forming units" (CFU-ECs). However, the origin, proliferative potential, and differentiation capacity of CFU-ECs is controversial. In contrast, other EPCs with blood vessel-forming ability, termed endothelial colony-forming cells (ECFCs), have been isolated from human peripheral blood. We compared the function of CFU-ECs and ECFCs and determined that CFU-ECs are derived from the hematopoietic system using progenitor assays, and analysis of donor cells from polycythemia vera patients harboring a Janus kinase 2 V617F mutation in hematopoietic stem cell clones. Further, CFU-ECs possess myeloid progenitor cell activity, differentiate into phagocytic macrophages, and fail to form perfused vessels in vivo. In contrast, ECFCs are clonally distinct from CFU-ECs, display robust proliferative potential, and form perfused vessels in vivo. Thus, these studies establish that CFU-ECs are not EPCs and the role of these cells in angiogenesis must be re-examined prior to further clinical trials, whereas ECFCs may serve as a potential therapy for vascular regeneration.
A robotic system towards concrete structure spalling and crack database (2017)

Concrete spalling and crack inspection is a labor intensive and routine task. However, it plays an important role in structure health monitoring (SHM) of civil infrastructures. Autonomous inspection with robots has been regarded as one of the best ways to reduce both error and cost. This paper presents an automated approach using Unmanned Aerial Vehicle(UAV) and towards a Concrete Structure Spalling and Crack database (CSSC), which is by far the first released database for deep learning inspection. We aim locate the spalling and crack regions to assist 3D registration and visualization. For deep inspection, we provide a complete procedure of data searching, labeling, training, and post processing. We further present a visual Simultaneously Localization and Mapping(SLAM) approach for localization and reconstruction. Comparative experiments and field tests are illustrated, results show that we can achieve an accuracy over 70% for field tests, and more than 93% accuracy with CSSC database.