gebhart/patrepeval huggingface dataset:
Synthesis and structural characterization of a remarkably stable, anionic, incompletely condensed silsesquioxane framework (1997)

The reaction of [(C 6 H 11 ) 7 Si 7 O 9 (OH) 3 ] 1 (2 equiv.) with [(C 6 H 11 ) 7 Si 7 O 9 (OTl ) 3 ] 3 affords a conproportionation product that reacts with [PPh 4 ]Cl, [PBu n 4 ]Cl and [NBu n 4 ]Br to produce the corresponding salts of [(C 6 H 11 ) 7 Si 7 O 10 (OH ) 2 ] - 5 (i.e. the monoanion derived from deprotonation of 1); a single-crystal X-ray diffraction study of the [(NBu n 4 ] + salt of 5 indicates that the molecules exist as isolated ion pairs with strong intramolecular hydrogen bonding; implications of this result for the chemistry of silica are discussed.
Z-Selective Ring-Opening Metathesis Polymerization of 3-Substituted Cyclooctenes by Monoaryloxide Pyrrolide Imido Alkylidene (MAP) Catalysts of Molybdenum and Tungsten (2013)

Ring-opening metathesis polymerization of a series of 3-substituted cyclooctenes (3-MeCOE, 3-HexCOE, and 3-PhCOE) initiated by various Mo and W MAP complexes leads to cis,HT-poly(3-RCOE) polymers. The apparent rate of polymerization of 3-HexCOE by W(N-t-Bu)(CH-t-Bu)(Pyr)(OHMT) (1c; Pyr = pyrrolide; OHMT = O-2,6-Mesityl2C6H3) is greater than the rate of polymerization by Mo(N-t-Bu)(CH-t-Bu)(Pyr)(OHMT) (1b), but both gave the same cis,HT polymer structures. Formation of HT-poly(3-RCOE) employing 1c takes place via propagating species in which the R group (methyl, hexyl, or phenyl) is on C2 of the propagating alkylidene chain, a type of intermediate that has been modeled through the preparation of W(N-t-Bu)(CHCHMeEt)(Pyr)(OHMT). The rate of ROMP is exceedingly sensitive to steric factors: e.g., W(N-t-Bu)(CH-t-Bu)(Me2Pyr)(OHMT), the dimethylpyrrolide analogue of 1c, essentially did not polymerize 3-HexCOE at 22 °C. When a sample of W(N-t-Bu)(CHCHMeEt)(Pyr)(OHMT) and 3-methyl-1-pentene in CDCl3 is cooled to −20 °C, the alkylidene resonances for W(N-t-Bu)(CHCHMeEt)(Pyr)(OHMT) disappear and resonances that can be ascribed to protons in a synα/synα′ disubstituted trigonal bipyramidal metallacyclobutane complex appear. 3-Methyl-1-pentene is readily lost from this metallacycle on the NMR time scale at room temperature.
Is Peptide YY Trophic to the Intestinal Epithelium of Parentally Fed Rats? (1990)

Four groups of intravenously maintained rats were infused with 0, 5, 20 or 80 micrograms/rat/day of peptide tyrosine tyrosine (PYY) for 3 days. After 3 days the rats were injected with 1 mg/kg of vincristine in order to arrest cells entering metaphase and were killed 2 h later. The gastrointestinal tract was removed, weighed and fixed. Samples of small intestine and colon were stained, microdissected and the mean number of metaphases per crypt determined. No significant effect on intestinal tissue mass or the 2-hour collection of metaphases was observed. It is concluded that PYY is not trophic to the gastrointestinal tract.
Phosphorylation of serum response factor, a factor that binds to the serum response element of the c-FOS enhancer. (1988)

Serum and growth factor regulation of c-FOS protooncogene transcription is mediated by the serum response element. A factor, serum response factor, binding to this element has already been identified. We demonstrate that serum response factor is phosphorylated in vivo on serine residues and that phosphatase treatment of this factor in vitro abolishes its DNA-binding activity. These results show phosphorylation of serum response factor to be required for its DNA-binding activity. The importance of serum response factor phosphorylation for the regulation of c-FOS expression is discussed.
Accounting for multiple comparisons in a genome-wide association study (GWAS) (2010)

Abstract Background As we enter an era when testing millions of SNPs in a single gene association study will become the standard, consideration of multiple comparisons is an essential part of determining statistical significance. Bonferroni adjustments can be made but are conservative due to the preponderance of linkage disequilibrium (LD) between genetic markers, and permutation testing is not always a viable option. Three major classes of corrections have been proposed to correct the dependent nature of genetic data in Bonferroni adjustments: permutation testing and related alternatives, principal components analysis (PCA), and analysis of blocks of LD across the genome. We consider seven implementations of these commonly used methods using data from 1514 European American participants genotyped for 700,078 SNPs in a GWAS for AIDS. Results A Bonferroni correction using the number of LD blocks found by the three algorithms implemented by Haploview resulted in an insufficiently conservative threshold, corresponding to a genome-wide significance level of α = 0.15 - 0.20. We observed a moderate increase in power when using PRESTO, SLIDE, and simpleℳ when compared with traditional Bonferroni methods for population data genotyped on the Affymetrix 6.0 platform in European Americans (α = 0.05 thresholds between 1 × 10 -7 and 7 × 10 -8 ). Conclusions Correcting for the number of LD blocks resulted in an anti-conservative Bonferroni adjustment. SLIDE and simpleℳ are particularly useful when using a statistical test not handled in optimized permutation testing packages, and genome-wide corrected p-values using SLIDE, are much easier to interpret for consumers of GWAS studies.
Nonenzymatic sequence-specific cleavage of single-stranded DNA to nucleotide resolution. DNA methyl thioether probes (1987)

We report the sequence-specific cleavage of single-stranded DNA to nucleotide resolution using chemically activated oligodeoxynucleotide methyl thioether hybridization probes (DNAMT). 5-[3-[ [3-(Methylthio)propionyl]amino]-trans-1- propenylldeoxyuridine S’-triphosphate (MT-dUTP) was enzymatically incorporated into an oligonucleotide duplex by using the Klenow fragment of DNA polymerase. Activation with CNBr at 25 OC, pH 5.5, followed by treatment with piperidine produced cleavage on the complementary strand at a single guanine (G) residue to the 5’-side of the modified base.
The Case for VM-Based Cloudlets in Mobile Computing (2009)

Mobile computing continuously evolve through the sustained effort of many researchers. It seamlessly augments users' cognitive abilities via compute-intensive capabilities such as speech recognition, natural language processing, etc. By thus empowering mobile users, we could transform many areas of human activity. This article discusses the technical obstacles to these transformations and proposes a new architecture for overcoming them. In this architecture, a mobile user exploits virtual machine (VM) technology to rapidly instantiate customized service software on a nearby cloudlet and then uses that service over a wireless LAN; the mobile device typically functions as a thin client with respect to the service. A cloudlet is a trusted, resource-rich computer or cluster of computers that's well-connected to the Internet and available for use by nearby mobile devices. Our strategy of leveraging transiently customized proximate infrastructure as a mobile device moves with its user through the physical world is called cloudlet-based, resource-rich, mobile computing. Crisp interactive response, which is essential for seamless augmentation of human cognition, is easily achieved in this architecture because of the cloudlet's physical proximity and one-hop network latency. Using a cloudlet also simplifies the challenge of meeting the peak bandwidth demand of multiple users interactively generating and receiving media such as high-definition video and high-resolution images. Rapid customization of infrastructure for diverse applications emerges as a critical requirement, and our results from a proof-of-concept prototype suggest that VM technology can indeed help meet this requirement.
Advancing Positive Youth Development: Perspectives of Youth as Researchers and Evaluators (2012)

This article describes the journey taken by a group of adolescents into the field and practice of youth-led research. The article gives voice to the growing number of youth participating in research and evaluation. The authors give authentic youth accounts of: (1) the process of becoming researchers and evaluators, (2) the benefits and challenges encountered as researchers and evaluators, (3) the community-based research they conducted, (4) the state and national recognition received as researchers and evaluators, (5) implications for practice and the future of youth-led research, and (6) steps necessary to move the field and study of youth-led research forward.
Novel, Ultraslow Inactivating Sodium Current in Human Ventricular Cardiomyocytes (1998)

Cardiomyocytes isolated from normal and explanted failing human hearts express INaL characterized by an ultraslow voltage-independent inactivation and reactivation.
Structure of V2O5·nH2O Xerogel Solved by the Atomic Pair Distribution Function Technique (2002)

A long-standing issue regarding the local and long-range structure of V(2)O(5)*nH(2)O xerogel has been successfully addressed. The full three-dimensional structure of the lamellar turbostratic V(2)O(5)*nH(2)O xerogel was determined by the atomic pair distribution function technique. We show that on the atomic scale the slabs of the xerogel can be described well as almost perfect pairs (i.e., bilayers) of single V(2)O(5) layers made of square pyramidal VO(5) units. These slabs are separated by water molecules and stack along the z-axis of a monoclinic unit cell (space group C2/m) with parameters a = 11.722(3) A, b = 3.570(3) A, c = 11.520(3) A, and beta = 88.65 degrees. The stacking sequence shows signatures of turbostratic disorder and a structural coherence limited to 50 A.
Neuron-Derived Orphan Receptor-1 (NOR-1) Modulates Vascular Smooth Muscle Cell Proliferation (2003)

Vascular smooth muscle cells (VSMCs) migration and proliferation play a key role in the pathophysiology of cardiovascular disease. However, the transcription factors that regulate VSMC activation are not completely characterized. By a mRNA-differential display approach, we have identified neuron-derived orphan receptor-1 (NOR-1), a transcription factor within the NGFI-B subfamily of nuclear receptors, as a immediate-early gene in VSMCs. Two NOR-1 isoforms (alpha and beta) were identified and cloned from serum-induced porcine VSMC that shared high homology with the human isoforms. Northern blot analysis revealed a strong and transient (1 to 6 hours) upregulation of NOR-1 in both porcine and human coronary SMCs by growth factors (serum, platelet-derived growth factor-BB, and epidermal growth factor) and alpha-thrombin but not by cytokines. NOR-1 upregulation is processed through G protein-coupled receptors and tyrosine kinase receptors, and involves Ca2+ mobilization, protein kinase C activation, and the mitogen-activated protein kinase pathway. This induction was closely dependent of the cAMP response elements present in NOR-1 promoter as transfection assays indicate. Human coronary atherosclerotic lesions overexpress NOR-1, and balloon angioplasty transiently induces NOR-1 in porcine coronary arteries with a pattern similar to that observed in VSMCs in culture. Antisense oligonucleotides against NOR-1 inhibited human coronary SMC proliferation (reduced de novo DNA synthesis, cell cycle progression, and VSMC wound repair) as efficiently as antisense against the protooncogene c-fos. These results show that NOR-1 modulates VSMC proliferation, and suggest that this transcription factor may play a role in both spontaneous and accelerated atherosclerosis.
Primary human CD34+ hematopoietic stem and progenitor cells express functionally active receptors of neuromediators (2004)

Recently, overlapping molecular phenotypes of hematopoietic and neuropoietic cells were described in mice. Here, we examined primary human CD34(+) hematopoietic stem and progenitor cells applying specialized cDNA arrays, real-time reverse-transcriptase-polymerase chain reaction (RT-PCR), and fluorescent-activated cell sorter (FACS) analysis focusing on genes involved in neurobiologic functions. We found expression of vesicle fusion and motility genes, ligand- and voltage-gated ion channels, receptor kinases and phosphatases, and, most interestingly, mRNA as well as protein expression of G protein-coupled receptors of neuromediators (corticotropin-releasing hormone 1 [CRH 1] and CRH 2 receptors, orexin/hypocretin 1 and 2 receptors, GABAB receptor, adenosine A(2)B receptor, opioid kappa 1 and mu 1 receptors, and 5-HT 1F receptor). As shown by 2-color immunofluorescence, the protein expression of these receptors was higher in the more immature CD38(dim) than in the CD38(bright) subset within the CD34(+) population, and completely absent in fully differentiated blood cells, suggesting that those receptors play a role in developmentally early CD34(+) stem and progenitor cells. The intracellular concentration of cyclic adenosine monophosphate (cAMP) in CD34(+) cells was diminished significantly upon stimulation of either CRH or orexin receptors, indicating that those are functionally active and coupled to inhibitory G proteins in human hematopoietic cells. In conclusion, these findings suggest a molecular interrelation of neuronal and hematopoietic signaling mechanisms in humans.
Intranasal sufentanil for cancer-associated breakthrough pain (2008)

The objective of this study was to demonstrate the efficacy, safety and patient acceptability of the use of intranasal sufentanil for cancer-associated breakthrough pain. This was a prospective, open label, observational study of patients in three inpatient palliative care units in Australia. Patients on opioids with cancer-associated breakthrough pain and clinical evidence of opioid responsiveness to their breakthrough pain were given intranasal (IN) Sufentanil via a GO Medical patient controlled IN analgesia device. The main outcome measures were pain scores, need to revert to previous breakthrough opioid after 30 min, number of patients who chose to continue using IN sufentanil, and adverse effects. There were 64 episodes of use of IN sufentanil for breakthrough pain in 30 patients. There was a significant reduction in pain scores at 15 (P < 0.0001) and 30 min (P < 0.0001). In only 4/64 (6%) episodes of breakthrough pain did the participants choose to revert to their prestudy breakthrough medication. Twenty-three patients (77%) rated IN sufentanil as better than their prestudy breakthrough medication. The incidence of adverse effects was low and most were mild. Our study showed that IN sufentanil can provide relatively rapid onset, intense but relatively short lasting analgesia and in the palliative care setting it is an effective, practical, and safe option for breakthrough pain.
Source optimization for image fidelity and throughput (2004)

In this study we first review existing source optimization methods. Lack of rigorous formulations motivates discussion of the optimization objectives and constraints. We stress the importance of using weighted and so-called Sobolev norms. Second, we state the main optimization problem as a set of the optimization objectives in a form of functional norm integrals to maximize image fidelity and source smoothness. We reduce this to a non-negative least square (NNLS) problem, which is solved by standard numerical methods. Third, we analyze solutions for important practical cases: alternating phase shifting applied to regular and semiregular pattern of contact holes, two types of SRAM cells with design rules from 130 to 250 nm, and a complex semidense contact layer pattern. Finally, we show how constraint optimization can be used to smooth strong off-axis quadrupole illuminations to achieve better image fidelity for some selected layout patterns.
Transition time modeling in deep submicron CMOS (2002)

As generally recognized, the performance of a CMOS gate, such as propagation delay time or short circuit power dissipation, is strongly affected by the nonzero input signal transition time. This paper presents an analytical model of the transition time of CMOS structures. The authors first develop the model for inverters, considering fast and slow input signal conditions, over a large design range of input-output coupling capacitance and capacitive load. They then extend this model to more complex gates. The validity of the presented model is demonstrated through a comparison with HSPICE simulations on a 0.18 /spl mu/m CMOS process.
Control of Pierce's Disease by Phage (2015)

Pierce's Disease (PD) of grapevines, caused by Xylella fastidiosa subsp. fastidiosa (Xf), is a limiting factor in the cultivation of grapevines in the US. There are presently no effective control methods to prevent or treat PD. The therapeutic and prophylactic efficacy of a phage cocktail composed of four virulent (lytic) phages was evaluated for control of PD. Xf levels in grapevines were significantly reduced in therapeutically or prophylactically treated grapevines. PD symptoms ceased to progress one week post-therapeutic treatment and symptoms were not observed in prophylactically treated grapevines. Cocktail phage levels increased in grapevines in the presence of the host. No in planta phage-resistant Xf isolates were obtained. Moreover, Xf mutants selected for phage resistance in vitro did not cause PD symptoms. Our results indicate that phages have great potential for biocontrol of PD and other economically important diseases caused by Xylella.
Application of Cross Wavelet Transform for ECG Pattern Analysis and Classification (2014)

In this paper, we use cross wavelet transform (XWT) for the analysis and classification of electrocardiogram (ECG) signals. The cross-correlation between two time-domain signals gives a measure of similarity between two waveforms. The application of the continuous wavelet transform to two time series and the cross examination of the two decompositions reveal localized similarities in time and frequency. Application of the XWT to a pair of data yields wavelet cross spectrum (WCS) and wavelet coherence (WCOH). The proposed algorithm analyzes ECG data utilizing XWT and explores the resulting spectral differences. A pathologically varying pattern from the normal pattern in the QT zone of the inferior leads shows the presence of inferior myocardial infarction. A normal beat ensemble is selected as the absolute normal ECG pattern template, and the coherence between various other normal and abnormal subjects is computed. The WCS and WCOH of various ECG patterns show distinguishing characteristics over two specific regions R1 and R2, where R1 is the QRS complex area and R2 is the T-wave region. The Physikalisch-Technische Bundesanstalt diagnostic ECG database is used for evaluation of the methods. A heuristically determined mathematical formula extracts the parameter(s) from the WCS and WCOH. Empirical tests establish that the parameter(s) are relevant for classification of normal and abnormal cardiac patterns. The overall accuracy, sensitivity, and specificity after combining the three leads are obtained as 97.6%, 97.3%, and 98.8%, respectively.
A New Level of Conotoxin Diversity, a Non-native Disulfide Bond Connectivity in α-Conotoxin AuIB Reduces Structural Definition but Increases Biological Activity (2002)

alpha-Conotoxin AuIB and a disulfide bond variant of AuIB have been synthesized to determine the role of disulfide bond connectivity on structure and activity. Both of these peptides contain the 15 amino acid sequence GCCSYPPCFATNPDC, with the globular (native) isomer having the disulfide connectivity Cys(2-8 and 3-15) and the ribbon isomer having the disulfide connectivity Cys(2-15 and 3-8). The solution structures of the peptides were determined by NMR spectroscopy, and their ability to block the nicotinic acetylcholine receptors on dissociated neurons of the rat parasympathetic ganglia was examined. The ribbon disulfide isomer, although having a less well defined structure, is surprisingly found to have approximately 10 times greater potency than the native peptide. To our knowledge this is the first demonstration of a non-native disulfide bond isomer of a conotoxin exhibiting greater biological activity than the native isomer.
Species-dependent binding of copper(II) bis(thiosemicarbazone) radiopharmaceuticals to serum albumin. (1995)

Copper-62-PTSM exhibits substantial interspecies variability in the strength of its binding to serum albumin, which appears to explain the problems encountered in using animal data to predict 62Cu-PTSM behavior in humans. The 62Cu-ETS and 62Cu-n-PrTS complexes may be viable alternatives to 62Cu-PTSM for PET studies to evaluate quantitatively myocardial blood flow in humans.
Activation of Mitochondria and Release of Mitochondrial Apoptogenic Factors by Betulinic Acid (1998)

Different classes of anticancer drugs may trigger apoptosis by acting on different subcellular targets and by activating distinct signaling pathways. Here, we report that betulinic acid (BetA) is a prototype cytotoxic agent that triggers apoptosis by a direct effect on mitochondria. In isolated mitochondria, BetA directly induces loss of transmembrane potential independent of a benzyloxycarbonyl-Val-Ala-Asp-fluoromethyl ketone-inhibitable caspase. This is inhibited by bongkrekic acid, an agent that stabilizes the permeability transition pore complex. Mitochondria undergoing BetA-induced permeability transition mediate cleavage of caspase-8 (FLICE/MACH/Mch5) and caspase-3 (CPP32/Yama) in a cell-free system. Soluble factors such as cytochrome c or apoptosis-inducing factor released from BetA-treated mitochondria are sufficient for cleavage of caspases and nuclear fragmentation. Addition of cytochrome c to cytosolic extracts results in cleavage of caspase-3, but not of caspase-8. However, supernatants of mitochondria, which have undergone permeability transition, and partially purified apoptosis-inducing factor activate both caspase-8 and caspase-3 in cytosolic extracts and suffice to activate recombinant caspase-8. These findings show that induction of mitochondrial permeability transition alone is sufficient to trigger the full apoptosis program and that some cytotoxic drugs such as BetA may induce apoptosis via a direct effect on mitochondria.
Highly conductive, crosslinked ionomers based on poly(styrene-co-maleic anhydride) for water electrolysis (2013)

Hydrogen production through water electrolysis calls for a low-cost non-fluoro membrane to make the process economically viable due to the high cost and environmental concerns of the current fluorinated ionomers. Here, we present such an ionomer with high proton conductivity based on the hybrid of commercially available poly(styrene-co-maleic anhydride) and polyhedral oligomeric silsesquioxane (POSS). The three-dimensional POSS framework, which does not only act as a robust scaffold but also provides binding sites for water, contributes to the amount of bound water, high proton conductivity and good oxidative stability.
Salmeterol, formoterol, and salbutamol in the isolated guinea pig trachea: differences in maximum relaxant effect and potency but not in functional antagonism. (1993)

In the guinea pig isolated trachea, formoterol and salbutamol produce more relaxant effect than salmeterol, suggesting that salmeterol is a partial beta 2 agonist. Very high concentrations of salmeterol may induce non-beta adrenoceptor mediated relaxation. Formoterol is more potent than both salbutamol and salmeterol. There is no pronounced difference in the magnitude of antagonism against carbachol induced contractions between salmeterol, formoterol, and salbutamol.