gebhart/patrepeval huggingface dataset:
Conversion of Xylan and Xylose into Furfural in Biorenewable Deep Eutectic Solvent with Trivalent Metal Chloride Added (2013)

Transformation of the hemicellulose fraction in an environmentally benign manner to deliver high value-added chemicals is critical for the integrated utilization of biomass. Amongst all the chemicals derived from hemicellulose, furfural (produced by hydrolysis of xylan into xylose and successive dehydration of the latter) is a promising option. In this manuscript, a catalytic approach for converting xylan and xylose into furfural co-catalyzed by choline chloride-citric acid•H2O, a deep eutectic solvent (DES) synthesized from biorenewable building blocks, and trivalent metal chloride was developed. Choline chloride-citric acid•H2O acted as both reaction medium and Brønsted acid catalyst. Both monophasic route and biphasic route (with methyl isobutyl ketoneas extractant for in situ extraction of furfural) were proposed. The highest furfural yields obtained from xylose and xylan in monophasic approach were 59.3% and 54.2%, respectively, at 140 °C, and these values increased to 73.1% and 68.6% when biphasic system was applied for the reaction. Moreover, in biphasic system, choline chloride-citric acid and metal chloride could be recycled and reused for 5 runs with stable catalytic ability.
<title>Technique for the automated analysis and grinding of desired profiles in materials</title> (1995)

Due to the inexact science of grinding, a technique was desired to automate the grinding process in order to complete a finished profile with a closed loop control. A desired finished shape, or profile, is input to the system. The closed loop control plans the optimal grinding process, and drives the machine controllers to complete the task. This technique can be applied to many types of surface grinding applications such as optical grinding, precision surface grinding for coordinate measuring systems, complex curve grinding, as well as many others. The example illustrated is the closed loop application of railway rail grinding. Vista (vision based transverse analyzer) was intended as a solution to the difficult problem of railroad rail grinding. Due to complexities in analysis, and measurement limitations, rail grinding had evolved as an inexact art. Vista was created to refine the analysis techniques, and to automate the process of rail grinding. The intent was to design and produce a system fully capable of grinding railroad rails efficiently without the aid of human intervention. Vista is comprised of two parts; a rail measurement system (RMS), and an expert system. These devices become the host controller of present day rail grinding machinery, increasing efficiency and accuracy in the rail grinding environment.
Complex periodic oscillations and Farey arithmetic in the Belousov–Zhabotinskii reaction (1986)

Our experiments on the manganese-catalyzed Belousov–Zhabotinskii reaction in a stirred flow reactor reveal many sequences of distinct multipeaked periodic states. In the parameter ranges studied the waveform for each periodic state consists of an admixture of small and large amplitude oscillations. No chaos is discernible, and in many cases the transitions from one periodic state to another occur without any observable hysteresis. Two types of sequences were studied in detail, one with waveforms consisting of concatenations of two basic patterns and another with waveforms consisting of concatenations of three basic patterns. The sequences of states with two patterns are described well by Farey arithmetic, which provides rational approximations of irrational numbers. These states can be characterized by a firing number, the ratio of the number of small amplitude oscillations to the total number of oscillations per period. For our data this ratio is a monotone stepwise-increasing function of flow rate, and the steps have a fractal dimension. The relationship between the observed sequence and the Farey arithmetic and the observation of a fractal dimension for the steps in the firing number suggest that the states formed by concatenating two patterns can be interpreted in terms of frequency locking on a 2 torus in phase space. The sequences of states with three basic patterns are described by a generalized Farey arithmetic that provides rational approximations for pairs of irrational numbers that are mutually irrational; this suggests that these states can be interpreted in terms of frequency locking on a 3 torus. A piecewise-linear two-dimensional map is shown to yield a phase diagram in qualitative accord with the measured phase diagram for these sequences.
Understanding height-structured competition in forests: is there anR*for light? (2007)

Tree species differ from one another in, and display trade-offs among, a wide range of attributes, including canopy and understorey growth and mortality rates, fecundity, height and crown allometry, and crown transmissivity. But how does this variation affect the outcome of interspecific competition and hence community structure? We derive criteria for the outcome of competition among tree species competing for light, given their allometric and life-history parameters. These criteria are defined in terms of a new simple whole life-cycle measure of performance, which provides a simple way to organize and understand the many ways in which species differ. The general case, in which all parameters can differ between species, can produce coexistence, founder control or competitive exclusion: thus, competition for light need not be hierarchical as implied by R* theory. The special case in which species differ only in crown transmissivity produces neutral dynamics. The special case in which species differ in all parameters except crown transmissivity gives hierarchical competition, where the equivalent of R* is Z*, the height at which trees enter the canopy in an equilibrium monoculture.
Characteristics of a liquid chromatograph/atmospheric pressure ionization mass spectrometer (1988)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTCharacteristics of a liquid chromatograph/atmospheric pressure ionization mass spectrometerMinoru. Sakairi and Hideki. KambaraCite this: Anal. Chem. 1988, 60, 8, 774–780Publication Date (Print):April 15, 1988Publication History Published online1 May 2002Published inissue 15 April 1988https://pubs.acs.org/doi/10.1021/ac00159a009https://doi.org/10.1021/ac00159a009research-articleACS PublicationsRequest reuse permissionsArticle Views255Altmetric-Citations80LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Color correction using principal components (1992)

Abstract The problem of color correction for changes in illumination is briefly reviewed. A new method using the spectral reflectance distribution in the image is introduced and compared to a white‐point mapping method. The new method is based on principal component analysis and thus is dependent upon the characteristics of the images that are to be viewed. These two methods are compared using chromaticity plots and the CIE L*a*b* ΔE measurement, for test samples which include color copiers, thermal writers, ink‐jet printers, and lithography.
Adaptive Block Transforms for Hybrid Video Coding (2001)

Todays standard video coders employ the hybrid coding scheme on a macroblock basis. In these coders blocks of 16 x 16 , and 8 x 8 pixel are used for motion compensation of non-interlaced video. The Discrete Cosine Transform (DCT) is then applied to the prediction error on blocks of size 8 x 8. The emerging
Blind source separation based on time-frequency signal representations (1998)

Blind source separation consists of recovering a set of signals of which only instantaneous linear mixtures are observed. Thus far, this problem has been solved using statistical information available on the source signals. This paper introduces a new blind source separation approach exploiting the difference in the time-frequency (t-f) signatures of the sources to be separated. The approach is based on the diagonalization of a combined set of "spatial t-f distributions". In contrast to existing techniques, the proposed approach allows the separation of Gaussian sources with identical spectral shape but with different t-f localization properties. The effects of spreading the noise power while localizing the source energy in the t-f domain amounts to increasing the robustness of the proposed approach with respect to noise and, hence, improved performance. Asymptotic performance analysis and numerical simulations are provided.
Distance geometry generates native‐like folds for small helical proteins using the consensus distances of predicted protein structures (1998)

For successful ab initio protein structure prediction, a method is needed to identify native-like structures from a set containing both native and non-native protein-like conformations. In this regard, the use of distance geometry has shown promise when accurate inter-residue distances are available. We describe a method by which distance geometry restraints are culled from sets of 500 protein-like conformations for four small helical proteins generated by the method of Simons et al. (1997). A consensus-based approach was applied in which every inter-Calpha distance was measured, and the most frequently occurring distances were used as input restraints for distance geometry. For each protein, a structure with lower coordinate root-mean-square (RMS) error than the mean of the original set was constructed; in three cases the topology of the fold resembled that of the native protein. When the fold sets were filtered for the best scoring conformations with respect to an all-atom knowledge-based scoring function, the remaining subset of 50 structures yielded restraints of higher accuracy. A second round of distance geometry using these restraints resulted in an average coordinate RMS error of 4.38 A.
Photoprotective Effect of Topically Applied Superoxide Dismutase on Sunburn Reaction in Comparison with Sunscreen (1990)

Photoprotective effect of topically applied superoxide dismutase (SOD) to guinea pig skin was compared with a commercially available sunscreen agent after a single exposure to UVB. While cutaneous SOD activity was remarkably decrease in non-treated control animals, both topical SOD and sunscreen agent significantly reduced the decrease in skin SOD activity after UVB irradiation. However, only the sunscreen agent successfully reduced erythema reaction 24h after irradiation but topical SOD failed. These findings suggest that topical SOD protects skin from photo-oxidative damage without affecting erythema response, and thus, from a practical standpoint, sunscreen agents, when compared with topical antioxidants, seem better at present for daily photoprotection.
Hidden Markov Models for Speech Recognition (1991)

The use of hidden Markov models for speech recognition has become predominant in the last several years, as evidenced by the number of published papers and talks at major speech conferences. The reasons this method has become so popular are the inherent statistical (mathematically precise) framework; the ease and availability of training algorithms for cstimating the parameters of the models from finite training sets of speech data; the flexibility of the resulting recognition system in which one can easily change the size, type, or architecture of the models to suit particular words, sounds, and so forth; and the ease of implementation of the overall recognition system. In this expository article, we address the role of statistical methods in this powerful technology as applied to speech recognition and discuss a range of theoretical and practical issues that are as yet unsolved in terms of their importance and their effect on performance for different system implementations.
Measurement and modeling of boron diffusion in Si and strained Si1−xGex epitaxial layers during rapid thermal annealing (1993)

Boron concentration profiles in rapid thermally annealed Si and strained Si1−xGex in situ doped, epitaxial layers were measured using secondary-ion-mass spectroscopy. Comparison of the Si1−xGex samples to the Si samples after rapid thermal annealing revealed a retarded B diffusivity inside the strained Si1−xGex layers. A simple empirical expression for the B retardation, which depended linearly on the Ge concentration, was developed and incorporated into a diffusion model for dopants in heterostructures. This model accurately simulated the measured B concentration profiles over a wide range of Ge fractions (0%–10%), B peak concentrations (2×1018–3×1019cm−3), and rapid thermal annealing conditions (900–1025 °C for 20–30 s).
JAK/STAT/SOCS‐signaling pathway and colon and rectal cancer (2011)

The Janus kinase (JAK)/signal transducer and activator of transcription (STAT) signaling pathway is involved in immune function and cell growth. We evaluated the association between genetic variation in JAK1 (10 SNPs), JAK2 (9 SNPs), TYK2 (5 SNPs), suppressors of cytokine signaling (SOCS)1 (2 SNPs), SOCS2 (2 SNPs), STAT1 (16 SNPs), STAT2 (2 SNPs), STAT3 (6 SNPs), STAT4 (21 SNPs), STAT5A (2 SNPs), STAT5B (3 SNPs), STAT6 (4 SNPs) with risk of colorectal cancer. We used data from population-based case-control studies (colon cancer n = 1555 cases, 1,956 controls; rectal cancer n = 754 cases, 959 controls). JAK2, SOCS2, STAT1, STAT3, STAT5A, STAT5B, and STAT6 were associated with colon cancer; STAT3, STAT4, STAT6, and TYK2 were associated with rectal cancer. Given the biological role of the JAK/STAT-signaling pathway and cytokines, we evaluated interaction with IFNG, TNF, and IL6; numerous statistically significant associations after adjustment for multiple comparisons were observed. The following statistically significant interactions were observed: TYK2 with aspirin/NSAID use; STAT1, STAT4, and TYK2 with estrogen status; and JAK2, STAT2, STAT4, STAT5A, STAT5B, and STAT6 with smoking status and colon cancer risk; JAK2, STAT6, and TYK2 with aspirin/NSAID use; JAK1 with estrogen status; STAT2 with cigarette smoking and rectal cancer. JAK2, SOCS1, STAT3, STAT5, and TYK2 were associated with colon cancer survival (hazard rate ratio (HRR) of 3.3 95% CI 2.01,5.42 for high mutational load). JAK2, SOCS1, STAT1, STAT4, and TYK2 were associated with rectal cancer survival (HRR 2.80 95% CI 1.63,4.80). These data support the importance of the JAK/STAT-signaling pathway in colorectal cancer and suggest targets for intervention.
Deformability-based cell selection with downstream immunofluorescence analysis (2016)

Mechanical properties of single cells have been shown to relate to cell phenotype and malignancy. However, until recently, it has been difficult to directly correlate each cell’s biophysical characteristics to its molecular traits. Here, we present a cell sorting technique for use with a suspended microchannel resonator (SMR), which can measure biophysical characteristics of a single cell based on the sensor’s record of its buoyant mass as well as its precise position while it traverses through a constricted microfluidic channel. The measurement provides information regarding the amount of time a cell takes to pass through a constriction (passage time), as related to the cell’s deformability and surface friction, as well as the particular manner in which it passes through. In the method presented here, cells of interest are determined based on passage time, and are collected off-chip for downstream immunofluorescence imaging. The biophysical single-cell SMR measurement can then be correlated to the molecular expression of the collected cell. This proof-of-principle is demonstrated by sorting and collecting tumor cells from cell line-spiked blood samples as well as a metastatic prostate cancer patient blood sample, identifying them by their surface protein expression and relating them to distinct SMR signal trajectories.
Immobilization of components in polymer membrane-based calcium-selective bulk optodes (1992)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTImmobilization of components in polymer membrane-based calcium-selective bulk optodesThomas. Rosatzin, Petr. Holy, Kurt. Seiler, Bruno. Rusterholz, and Wilhelm. SimonCite this: Anal. Chem. 1992, 64, 18, 2029–2035Publication Date (Print):September 15, 1992Publication History Published online1 May 2002Published inissue 15 September 1992https://pubs.acs.org/doi/10.1021/ac00042a004https://doi.org/10.1021/ac00042a004research-articleACS PublicationsRequest reuse permissionsArticle Views475Altmetric-Citations73LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
5-Substituted N4-Hydroxy-2‘-deoxycytidines and Their 5‘-Monophosphates:  Synthesis, Conformation, Interaction with Tumor Thymidylate Synthase, and in Vitro Antitumor Activity (2000)

Convenient procedures are described for the synthesis of 5-substituted N(4)-hydroxy-2'-deoxycytidines 5a,b,d-h via transformation of the respective 5-substituted 3', 5'-di-O-acetyl-2'-deoxyuridines 1a-c,e-h. These procedures involved site-specific triazolation or N-methylimidazolation at position C(4), followed by hydroxylamination and deblocking with MeOH-NH(3). Nucleosides 5a,b,d-h were selectively converted to the corresponding 5'-monophosphates 6a,b,d-h with the aid of the wheat shoot phosphotransferase system. Conformation of each nucleoside in D(2)O solution, deduced from (1)H NMR spectra and confirmed by molecular mechanics calculations, showed the pentose ring to exist predominantly in the conformation S (C-2'-endo) and the N(4)-OH group as the cis rotamer. Cell growth inhibition was studied with two L5178Y murine leukemia cell lines, parental and 5-fluoro-2'-deoxyuridine (FdUrd)-resistant, the latter 70-fold less sensitive toward FdUrd than the former. With FdUrd-resistant L5178Y cells, 5-fluoro-N(4)-hydroxy-2'-deoxycytidine (5e) caused almost 3-fold stronger growth inhibition than FdUrd; 5e was only some 3-fold weaker growth inhibitor of the resistant cells than of the parental cells. Thymidylate synthase inhibition was studied with two forms of the enzyme differing in sensitivities toward 5-fluoro-2'-deoxyuridine 5'-monophosphate (FdUMP), isolated from parental and FdUrd-resistant L1210 cell lines. All N(4)-hydroxy-dCMP (6a,b,d-h) and dUMP analogues studied were competitive vs dUMP inhibitors of the enzyme. Analogues 6b,d-h and 5-hydroxymethyl-dUMP, similar to N(4)-hydroxy-dCMP (6a) and FdUMP, were also N(5), N(10)-methylenetetrahydrofolate-dependent, hence mechanism-based, slow-binding inhibitors. 5-Chloro-dUMP, 5-bromo-dUMP, and 5-iodo-dUMP, similar to dTMP, did not cause a time-dependent inactivation of the enzyme. Instead, they behaved as classic inhibitors of tritium release from [5-(3)H]dUMP. 5-Bromo-dUMP and 5-iodo-dUMP showed substrate activity independent of N(5), N(10)-methylenetetrahydrofolate in the thymidylate synthase-catalyzed dehalogenation reaction. The =N-OH substituent of the pyrimidine C(4) prevented the enzyme-catalyzed release from the C(5) of Br(-) and I(-) (the same shown previously for H(+)). While FdUMP and 6a showed a higher affinity and greater inactivation power with the parental cell than FdUrd-resistant cell enzyme, an opposite relationship could be seen with 5-hydroxymethyl-dUMP.
Stem cell patterns in cell lines derived from head and neck squamous cell carcinoma (2007)

The initiation, growth, recurrence and metastasis of solid tumours, including squamous cell carcinoma of the head and neck region, have been related to the behaviour of a small subpopulation of 'tumour-initiating' cells. Cells with stem cell characteristics have also been identified in cell lines derived from cancers and the aim of the present work was to extend examination of such cells. Established cell lines were examined for their patterns of colony morphologies and staining, the presence of a Hoechst dye-excluding 'side population', expression of the putative stem cell markers CD44, CD133 and CD29, and their ability to grow as 'cancer spheroids'. Two cell lines, CaLH2 and CaLH3, recently generated from HNSCC tumour biopsies, were similarly examined. All cell lines showed a holoclone/meroclone/paraclone series of colony morphologies and cell sorting indicated that CD44 marker expression was related to clonogenicity. FACS analysis after exposure to Hoechst dye indicated that the CA1, H357 and UK1 cell lines contain a dye-excluding 'side population', a property associated with stem-like subpopulations. When held in suspension, all cell lines formed spheroids that could be re-passaged. These observations indicate that cell lines derived from HNSCC contain cells with stem cell properties and that such cell lines may provide experimental systems relevant to the behaviour of stem cells present in the tumours of origin and to their responses to therapy.
Differences between males and females in rates of serotonin synthesis in human brain (1997)

Rates of serotonin synthesis were measured in the human brain using positron emission tomography. The sensitivity of the method is indicated by the fact that measurements are possible even after a substantial lowering of synthesis induced by acute tryptophan depletion. Unlike serotonin levels in human brain, which vary greatly in different brain areas, rates of synthesis of the indolamine are rather uniform throughout the brain. The mean rate of synthesis in normal males was found to be 52% higher than in normal females; this marked difference may be a factor relevant to the lower incidence of major unipolar depression in males.