gebhart/patrepeval huggingface dataset:
Spotlight SAR data processing using the frequency scaling algorithm (1999)

This paper presents a new processing algorithm for spotlight SAR data processing. The algorithm performs the range cell migration correction for non-chirped raw data without interpolation by using a novel frequency scaling operation. The azimuth processing is based on a spectral analysis approach which is made highly accurate by azimuth scaling. In almost all processing stages, a subaperture approach is introduced for efficient azimuth processing. In this paper, the complete derivation of the algorithm is presented. A very useful formulation for non-chirped SAR signals in the range Doppler domain is also proposed where the residual video phase is expressed by a chirp convolution. The algorithm performance is shown by several simulations. A spotlight image, which has been extracted from stripmap raw data of the experimental SAR system of DLR, shows the validity of the frequency scaling algorithm.
Analysis of educational media server workloads (2001)

This paper presents an extensive analysis of the client workloads for educational media servers at two major U.S. universities. The goals of the analysis include providing data for generating synthetic workloads, gaining insight into the design of streaming content distribution networks, and quantifying how much server bandwidth can be saved in interactive educational environments by using recently developed multicast streaming methods for stored content.
Toll-like Receptor-4 Mediates Lipopolysaccharide-induced Signal Transduction (1999)

TLR4 is a member of the recently identified Toll-like receptor family of proteins and has been putatively identified as Lps, the gene necessary for potent responses to lipopolysaccharide in mammals. In order to determine whether TLR4 is involved in lipopolysaccharide-induced activation of the nuclear factor-kappaB (NF-kappaB) pathway, HEK 293 cells were transiently transfected with human TLR4 cDNA and an NF-kappaB-dependent luciferase reporter plasmid followed by stimulation with lipopolysaccharide/CD14 complexes. The results demonstrate that lipopolysaccharide stimulates NF-kappaB-mediated gene expression in cells transfected with the TLR4 gene in a dose- and time-dependent fashion. Furthermore, E5531, a lipopolysaccharide antagonist, blocked TLR4-mediated transgene activation in a dose-dependent manner (IC50 approximately 30 nM). These data demonstrate that TLR4 is involved in lipopolysaccharide signaling and serves as a cell-surface co-receptor for CD14, leading to lipopolysaccharide-mediated NF-kappaB activation and subsequent cellular events.
A new model for the interaction of dystrophin with F-actin. (1996)

The F-actin binding and cross-linking properties of skeletal muscle dystrophin-glycoprotein complex were examined using high and low speed cosedimentation assays, microcapillary falling ball viscometry, and electron microscopy. Dystrophin-glycoprotein complex binding to F-actin saturated near 0.042 +/- 0.005 mol/ mol, which corresponds to one dystrophin per 24 actin monomers. Dystrophin-glycoprotein complex bound to F-actin with an average apparent Kd for dystrophin of 0.5 microM. These results demonstrate that native, full-length dystrophin in the glycoprotein complex binds F-actin with some properties similar to those measured for several members of the actin cross-linking super-family of proteins. However, we failed to observe dystrophin-glycoprotein complex-induced cross-linking of F-actin by three different methods, each positively controlled with alpha-actinin. Furthermore, high speed cosedimentation analysis of dystrophin-glycoprotein complex digested with calpain revealed a novel F-actin binding site located near the middle of the dystrophin rod domain. Recombinant dystrophin fragments corresponding to the novel actin binding site and the first 246 amino acids of dystrophin both bound F-actin but with significantly lower affinity and higher capacity than was observed with purified dystrophin-glycoprotein complex. Finally, dystrophin-glycoprotein complex was observed to significantly slow the depolymerization of F-actin, Suggesting that dystrophin may lie along side an actin filament through interaction with multiple actin monomers. These data suggest that although dystrophin is most closely related to the actin cross-linking superfamily based on sequence homology, dystrophin binds F-actin in a manner more analogous to actin side-binding proteins.
Hybrid Graphene–Perovskite Phototransistors with Ultrahigh Responsivity and Gain (2015)

Graphene is an attractive optoelectronic material for light detection because of its broadband light absorption and fast response time. However, the relatively low absorption cross‐section, fast recombination rate, and the absence of gain mechanism have limited the responsivity of pure graphene‐based phototransistor to ≈10 −2 A W −1 . In this work, a photoconductive gain of ≈10 9 electrons per photon and a responsivity of ≈6.0 × 10 5 A W −1 are demonstrated in a hybrid photodetector that consists of monolayer graphene covered with a thin layer of dispersive organolead halide perovskite (CH 3 NH 3 PbBr 2 I) islands. The unprecedented performance is attributed to the effective charge transfer and photogating effect, which were evidenced by photoluminescence quenching, time‐resolved photoluminescence decay, scanning near‐field optical microscopy, and photocurrent mapping. Unlike previous report which used perovskite bulk thin film, the perovskite islands have low bulk recombination rate of photogenerated carriers. The device also shows broad photodetection spectral range from ultraviolet to visible (250–700 nm), affording new opportunities for scalable UV detectors and imaging sensors.
Periprosthetic bone loss in total hip arthroplasty. Polyethylene wear debris and the concept of the effective joint space. (1992)

Thirty-four hips in which there had been prosthetic replacement were selected for study because of the presence of linear (diffuse) or lytic (localized) areas of periprosthetic bone loss. In all hips, there was careful documentation of the anatomical location of the material that had been obtained for histological analysis, and the specific purpose of the removal of the tissue was for examination to determine the cause of the resorption of bone. Specimens from twenty-three hips were retrieved during an operation and from eleven hips, at autopsy. The area of bone loss was linear only in sixteen hips, lytic only in thirteen, and both linear and lytic in five. In all thirty-four hips, intracellular particulate debris was found in the macrophages that were present in the area of bone resorption. All thirty-four had intracellular particles of polyethylene, many of which were less than one micrometer in size. Thirty-one hips had extracellular particles of polyethylene as well. Twenty-two of the thirty-four hips had intracellular metallic debris; in ten, metallic debris was found extracellularly as well. Ten of the sixteen cemented specimens had intracellular and extracellular polymethylmethacrylate debris. In the mechanically stable prostheses--cemented and uncemented--polyethylene wear debris was identified in areas of bone resorption far from the articular surfaces. The number of macrophages in a microscopic field was directly related to the amount of particulate polyethylene debris that was visible by light microscopy. Although the gross radiographic appearances of linear bone loss and lytic bone loss were different, the histological appearance of the regions in which there was active bone resorption was similar. Regardless of the radiographic appearance and anatomical origin of the specimen, bone resorption was found to occur in association with macrophages that were laden with polyethylene debris. In general, the number of macrophages present had a direct relationship to the degree of bone resorption that was seen. We believe that these findings indicate that joint fluid penetrates far more extensively than previously thought, even in a well fixed component, along the interface between the prosthesis and bone and in the periprosthetic tissues; it is often more extensive than is shown by arthrography. We therefore suggest the concept of the effective joint space to include all periprosthetic regions that are accessible to joint fluid and thus accessible to particulate debris.(ABSTRACT TRUNCATED AT 400 WORDS)
Evaluation of Removable and Irremovable Cast Walkers in the Healing of Diabetic Foot Wounds (2005)

Modification of a standard RCW to increase patient adherence to pressure off-loading may increase both the proportion of ulcers that heal and the rate of healing of diabetic neuropathic wounds.
Possible role of macrophage-derived soluble mediators in the pathogenesis of encephalomyocarditis virus-induced diabetes in mice (1997)

Pancreatic islets from DBA/2 mice infected with the D variant of encephalomyocarditis (EMC-D) virus revealed lymphocytic infiltration with moderate to severe destruction of pancreatic beta cells. Our previous studies showed that the major population of infiltrating cells at the early stages of infection is macrophages. The inactivation of macrophages prior to viral infection resulted in the prevention of diabetes, whereas activation of macrophages prior to viral infection resulted in the enhancement of beta-cell destruction. This investigation was initiated to determine whether macrophage-produced soluble mediators play a role in the destruction of pancreatic beta cells in mice infected with a low dose of EMC-D virus. When we examined the expression of the soluble mediators interleukin-1 beta (IL-1beta), tumor necrosis factor alpha (TNF-alpha), and inducible nitric oxide synthase (iNOS) in the pancreatic islets, we found that these mediators were clearly expressed at an early stage of insulitis and that this expression was evident until the development of diabetes. We confirmed the expression of these mediators by in situ hybridization with digoxigenin-labelled RNA probes or immunohistochemistry in the pancreatic islets. Mice treated with antibody against IL-1beta or TNF-alpha or with the iNOS inhibitor aminoguanidine exhibited a significant decrease in the incidence of diabetes. Mice treated with a combination of anti-IL-1beta antibody, anti-TNF-alpha antibody, and aminoguanidine exhibited a greater decrease in the incidence of disease than did mice treated with one of the antibodies or aminoguanidine. On the basis of these observations, we conclude that macrophage-produced soluble mediators play an important role in the destruction of pancreatic beta cells, resulting in the development of diabetes in mice infected with a low dose of EMC-D virus.
Deep content-based music recommendation (2013)

Automatic music recommendation has become an increasingly relevant problem in recent years, since a lot of music is now sold and consumed digitally. Most recommender systems rely on collaborative filtering. However, this approach suffers from the cold start problem: it fails when no usage data is available, so it is not effective for recommending new and unpopular songs. In this paper, we propose to use a latent factor model for recommendation, and predict the latent factors from music audio when they cannot be obtained from usage data. We compare a traditional approach using a bag-of-words representation of the audio signals with deep convolutional neural networks, and evaluate the predictions quantitatively and qualitatively on the Million Song Dataset. We show that using predicted latent factors produces sensible recommendations, despite the fact that there is a large semantic gap between the characteristics of a song that affect user preference and the corresponding audio signal. We also show that recent advances in deep learning translate very well to the music recommendation setting, with deep convolutional neural networks significantly outperforming the traditional approach.
Characteristics of CD4+CD25+ regulatory T cells in the peripheral circulation of patients with head and neck cancer (2005)

Patients with squamous cell carcinoma of the head and neck (SCCHN) have depressed antitumour immunity. The presence of CD4+CD25+ (Treg) cells in these patients might be, in part, responsible for downregulation of antitumour immune responses. To evaluate the frequency and characteristics of Treg in the peripheral circulation of patients with SCCHN, we used multicolour flow cytometry. Expression of CCR7, CD62L, ζ chain and Annexin V binding to Treg and non-Treg CD4+ lymphocyte populations were evaluated. Treg were confirmed to be Foxp3+ and GITR+. The Treg frequency was significantly elevated in patients with active disease and those with no evidence of disease (NED) following curative therapies. Both Treg and non-Treg CD4+ T cells in patients were significantly enriched in CCR7− and CD62L− cell subsets. Although Treg in patients contained a higher proportion of double negative (CCR7−CD62L−) cells, the majority of Tregs were CCR7−CD62L+. The proportion of Annexin V+CD4+ T cells was higher in patients (P<0.00005) than normal controls (NC), and Treg were significantly more sensitive to apoptosis than non-Treg in patients and NC. Expression of ζ was reduced in all subsets of CD4+ T cells obtained from patients vs NC. The data suggest that Treg in patients with SCCHN largely contain T cells with the ‘effector’ phenotype, which bind Annexin V and have low ζ expression, consistent with their activation state and a rapid turnover in the peripheral circulation.
Effect of Intra-Canal Direct Current Electric Stimulation on Orthodontic Tooth Movement: An Experimental Study in Canines (2019)

Objectives: The purpose of this study was to evaluate whether intra-canal application of controlled direct electric current (DEC) could accelerate the amount of orthodontic tooth movement (OTM) in young adult mixed breed dogs. Methods: Fourth premolars of both jaws of five young adult mixed breed dogs were divided into two groups of control and experimental groups. Orthodontic force was applied to both groups using an active NiTi push coil spring. Direct electric stimulation (15µA DC) was conducted by intra-canal usage of electric potential (1.5v). The experimental teeth were compared with controls in terms of clinical OTM results measured with an electronic caliper every two weeks (four time intervals). The animals were sacrificed one month (T2) or two months (T4) after initiation; and tissue sections were decalcified for histological evaluation. The data were analyzed using SPSS 16, Shapiro-Wilk test and paired t-test. Results: Measurements revealed a statistically significant increase in OTM at electrically stimulated sites compared to the control sites in just one time interval (T3: after four weeks) (P< 0.05). Histological sections also showed increased osteoblastic and osteoclastic activity at tension and compression sides of the experimental group compared to the control group, respectively at both time intervals (T2 and T4). Conclusion: Direct intra-canal electric current applied by a miniature electric device is effective for increasing the rate and amount of OTM in canine experimental model.
Association between DPYD c.1129-5923 C>G/hapB3 and severe toxicity to 5-fluorouracil-based chemotherapy in stage III colon cancer patients (2015)

Severe (grade≥3) adverse events (AEs) to 5-fluorouracil (5-FU)-based chemotherapy regimens can result in treatment delays or cessation, and, in extreme cases, life-threatening complications. Current genetic biomarkers for 5-FU toxicity prediction, however, account for only a small proportion of toxic cases. In the current study, we assessed DPYD variants suggested to correlate with 5-FU toxicity, a deep intronic variant (c.1129-5923 C>G), and four variants within a haplotype (hapB3) in 1953 stage III colon cancer patients who received adjuvant FOLFOX±cetuximab. Logistic regression was used to assess multivariable associations between DPYD variant status and AEs common to 5-FU (5FU-AEs). In our study cohort, 1228 patients (62.9%) reported any grade≥3 AE (overall AE), with 638 patients (32.7%) reporting any grade≥3 5FU-AE. Only 32 of 78 (41.0%) patients carrying DPYD c.1129-5923 C>G and the completely linked hapB3 variants c.1236 C>G and c.959-51 T>C showed at least one grade≥3 5FU-AE, resulting in no statistically significant association (adjusted odds ratio=1.47, 95% confidence interval=0.90-2.43, P=0.1267). No significant associations were identified between c.1129-5923 C>G/hapB3 and overall grade≥3 AE rate. Our results suggest that c.1129-5923 C>G/hapB3 have limited predictive value for severe toxicity to 5-FU-based combination chemotherapy.
Nrf2 activation as target to implement therapeutic treatments (2015)

A chronic increase of oxidative stress is typical of serious pathologies such as myocardial infarction, stroke, chronic limb ischemia, chronic obstructive pulmonary disease (COPD), type II-diabetes, age-related macular degeneration leads to an epic increase of morbidity and mortality in all countries of the world. The initial inflammation followed by an excessive release of reactive oxygen species (ROS) implies a diffused cellular injury that needs to be corrected by an inducible expression of the innate detoxifying and antioxidant system. The transcription factor Nrf2, when properly activated, is able to restore a redox homeostasis and possibly improve human health.
Correlation Between Vortex Ring Formation and Mitral Annulus Dynamics During Ventricular Rapid Filling (2007)

One of the most important fluid phenomena observed in the left ventricle during diastole is the presence of vortex rings that develop with a strong jet entering through the mitral valve. The present study is focused on the rapid filling phase of diastole, during which the left ventricle expands and receives blood through the fully open mitral valve. The atrioventricular system during the rapid filling phase was emulated experimentally with a simplified mechanical model in which the relevant pressure decay and the dimension of mitral annulus approximate the physiologic and pathologic values. Digital particle image velocimetry measurements were correlated with the force measurements on the mitral annulus plane to analyze the relation between flow and the mitral annulus motion. The recoil force on the displaced annulus plane was computed on the basis of plane acceleration and plane velocity and correlated with the inflow jet. Measurements of the recoil force for different values of the mitral annulus diameter showed that the recoil force was generated during fluid propulsion and that it is maximal for an annulus diameter close to the normal adult value in a healthy left ventricle. We also tested annulus diameters smaller and larger than the normal one. The smaller annulus corresponds to the stenotic valves and the larger annulus exists in dilated cardiomyopathy cases. In both conditions, the recoil force was found to be smaller than in the normal case. These observations are consistent with the previously reported results for dilated cardiomyopathy and mitral stenosis clinical conditions.
Oestrogen receptors alpha and beta differ in normal human breast and breast carcinomas (2002)

The identification of a second oestrogen receptor, oestrogen receptor (ER) beta, has led to a need to assess the relative importance of the classical ERalpha and ERbeta in human breast and breast carcinomas. ERalpha and ERbeta mRNA was assessed in 61 carcinomas, 8 benign breast lesions, and 30 samples of normal breast using reverse transcriptase (RT)-nested polymerase chain reaction (PCR). Immunohistochemical analysis of ERalpha and ERbeta was performed in 62 carcinomas, the 38 non-malignant breast tissues, and 32 normal breast samples with menstrual cycle data. ERalpha mRNA was detected in 92% of breast cancers, with ERbeta mRNA (wild-type and/or variant form) in 85%; 72% had ERalpha protein, 62% progesterone receptor (PgR), and 32% ERbeta. ERalpha protein had a strong correlation with grade; ERbeta did not, although it was present in three of four grade I carcinomas and in special types. There was no correlation between the presence of ERalpha and ERbeta protein. In non-malignant breast, similar expression of ERalpha and beta was observed, apart from expression of ERbeta in stromal cells and myoepithelium, the latter being confirmed by RT-PCR and western blotting. There were differences in ERalpha in relation to the menstrual cycle but not PgR or ERbeta. The findings indicate a need to understand the role and regulation of ERbeta in normal breast and the reason for its down-regulation in mammary carcinogenesis.
Preclinical development of an adjuvant-free peptide vaccine with activity against CMV pp65 in HLA transgenic mice (2002)

Epitope vaccines have shown promise for inducing cellular immune responses in animal models of infectious disease. In cases where cellular immunity was augmented, peptide vaccines composed of covalently linked minimal cytotoxic T-lymphocyte (CTL) and T-helper (T(H)) epitopes generally showed the most efficacy. To address a clinical vaccine strategy for cytomegalovirus (CMV) in the context of HCT (hematopoietic cell transplantation), we observed that linking the synthetically derived pan-DR epitope peptide (PADRE) or one of several tetanus T(H) epitopes to the immunodominant human leukocyte antigen (HLA) A*0201-restricted CTL epitope from CMV-pp65 to create a fusion peptide caused robust cytotoxic cellular immune responses in HLA A*0201/K(b) transgenic mice. Significantly, the fusion peptides are immunogenic when administered in saline solution by either subcutaneous or intranasal routes. CpG-containing single-stranded DNA (ss-oligodeoxynucleotide [ODN]) added to the fusion peptides dramatically up-regulated immune recognition by either route. Notably, target cells that either expressed full-length pp65 protein from vaccinia viruses or were sensitized with the CTL epitope encoded in the vaccine were recognized by splenic effectors from immunized animals. Visualization of murine peptide-specific CTL by flow cytometry was accomplished using an HLA A*0201 tetramer complexed with the pp65(495-503) CTL epitope. T(H)-CTL epitope fusion peptides in combination with CpG ss-ODN represent a new strategy for parenteral or mucosal delivery of vaccines in a safe and effective manner that has applicability for control or prophylaxis of infectious disease, especially in situations such as vaccination of donors or recipients of HCT, where highly inflammatory adjuvants are not desired.
Why Should Sleep Apnea Be Diagnosed and Treated? (1994)

Obstructive sleep apnea (OSA) is a common disorder, and it is likely that there are a large number of undiagnosed patients. Although the primary pathophysiologic events occur during sleep, OSA causes adverse daytime multisystem dysfunction. These sequelae affect the patients' life physically and psychosocially, and in severe cases, they may be life threatening. Treatments can reverse most of these sequelae. This report reviews the effect of treatment on these sequelae. Some of the severe complications may not be reversible. The goal of treatment is to prevent the repetitive upper airway obstructions during sleep, and thus reverse the severe sequelae and restore the patient's quality of life. Although nasal continuous positive airway pressure (nCPAP) is the treatment of choice for OSA, this approach has many problems and is still far from ideal. A large number of patients treated with nCPAP are not compliant and so remain subject to the severe sequelae.