gebhart/patrepeval huggingface dataset:
The Proinflammatory CD14+CD16+DR++ Monocytes Are a Major Source of TNF (2002)

In human blood two monocyte populations can be distinguished, i.e., the CD14(++)CD16(-)DR(+) classical monocytes and the CD14(+)CD16(+)DR(++) proinflammatory monocytes that account for only 10% of all monocytes. We have studied TNF production in these two types of cells using three-color immunofluorescence and flow cytometry on whole peripheral blood samples stimulated with either LPS or with the bacterial lipopeptide S-(2,3-bis(palmitoyloxy)-(2-RS)-propyl)-N-palmitoyl-(R)-Cys-(S)-Ser-(S)-Lys(4)-OH,trihydrochloride (Pam3Cys). After stimulation with LPS the median fluorescence intensity for TNF protein was 3-fold higher in the proinflammatory monocytes when compared with the classical monocytes. After stimulation with Pam3Cys they almost exclusively responded showing 10-fold-higher levels of median fluorescence intensity for TNF protein. The median fluorescence intensity for Toll-like receptor 2 cell surface protein was found 2-fold higher on CD14(+)CD16(+)DR(++) monocytes, which may explain, in part, the higher Pam3Cys-induced TNF production by these cells. When analyzing secretion of TNF protein into the supernatant in PBMCs after depletion of CD16(+) monocytes we found a reduction of LPS-induced TNF by 28% but Pam3Cys-induced TNF was reduced by 64%. This indicates that the minor population of CD14(+)CD16(+) monocytes are major producers of TNF in human blood.
Intrinsic references in distributed systems (2003)

The notion of intrinsic references, i.e. references based on the hash digest of the referent, is introduced and contrasted with that of physical references, where the referent is defined relative to the state of a physical system. A retrieval mechanism using intrinsic references, the Elephant Store, is presented. The use of intrinsic references in hierarchical data structures is discussed, and the advantages regarding version management, consistency and distributed storage are argued.
Novel 5-Substituted-1H-tetrazole Derivatives as Potent Glucose and Lipid Lowering Agents. (2002)

A series of 5-(4-alkoxyphenylalkyl)-1H-tetrazole derivatives, containing an oxazole-based group at the alkoxy moiety, was prepared and their antidiabetic effects were evaluated in two genetically obese and diabetic animal models, KKAy mice and Wistar fatty rats. Syntheses were performed by cyclization of the corresponding nitrites reacting with azide compounds. A large number of the 5-(4-alkoxyphenylalkyl)-1H-tetrazoles showed potent glucose and lipid lowering activities in KKAy mice. In particular, 5-[3-[6-(5-methyl-2-phenyl-4-oxazolyl-methoxy)-3-pyridyl]propyl]-1H-tetrazole had potent glucose lowering activity (ED25=0.0839 mg x kg(-1) x d(-1)), being 72 times more active than pioglitazone hydrochloride (ED25=6.0 mg x kg(-1) x d(-1)). This compound also showed strong glucose lowering (ED25=0.0873 mg x kg(-1) x d(-1)) and lipid lowering effects (ED25=0.0277 mg x kg(-1) x d(-1)) in Wistar fatty rats. The antidiabetic effects of this compound are considered to be due to its potent agonistic activity for peroxisome proliferator-activated receptor gamma (PPARgamma) (EC50 = 6.75 nM).
Physical and functional association of Src-related protein tyrosine kinases with Fc gamma RII in monocytic THP-1 cells. (1994)

Aggregation of Fc gamma RII (CD 32), a low affinity receptor for immunoglobulin G (IgG), on the monocytic cell line THP-1 induces protein tyrosine kinase (PTK) activity. Several distinct cellular proteins, including Fc gamma RII itself, are phosphorylated on tyrosine following cross-linking of the receptor. Fc gamma RII lacks intrinsic PTK activity. In this report we demonstrate that a kinase activity was coprecipitated with Fc gamma RII in THP-1 cells. The kinetics of the receptor-associated kinase activity paralleled the appearance of tyrosine phosphorylation events observed following Fc gamma RII activation of THP-1 cells. Several proteins were associated with the receptor. Reimmunoprecipitation analysis demonstrated that lyn gene products were among the proteins coprecipitated with Fc gamma RII. p59hck (Hck) and p56lyn (Lyn) were the most abundant Src-related PTKs (Src-PTKs) in THP-1 cells. Enzymatic activity of both kinases, as measured by an in vitro kinase assay, was increased following specific cross-linking of Fc gamma RII. Furthermore, Fc gamma RII was specifically associated with both enzymes following its engagement and served as a substrate for both of these kinases. The association of Fc gamma RII with Src-PTK was specific for Fc gamma RII activation of THP-1 cells, since activation of cells via the high affinity Fc gamma receptor, Fc gamma RI (CD 64), did not result in association of Fc gamma RII with Hck or Lyn. Our data demonstrate a functional and physical association of Fc gamma RII with Hck and Lyn consistent with the involvement of Src-PTK in Fc gamma RII-mediated signal transduction.
[Enhancement of drug absorption by iontophoresis and phonophoresis and clinical application]. (1998)

Concepts of iontophoresis and phonophoresis are described. Main factors regarding iontophoretic transdermal drug delivery of ionized drugs or non-ionized drugs and clinical applications are outlined. Iontophoretic and sonophoretic transdermal drug delivery has some advantages and disadvantages. However, its clinical use for controlled drug delivery corresponding to chronopharmacology will bring more benefit to patients in near future.
Athermal AWGs for colourless WDM-PON with -40&amp;#176;C to +70&amp;#176;C and underwater operation (2006)

Athermal AWGs are ideal candidates for MUX/DEMUX in WDM-PON applications being passive, scalable, cyclic and low cost. This paper demonstrates an AWG with -40°C to 70°C and underwater operation in all C, L, S and E-bands.
Noninvasive transcranial direct current stimulation over the left prefrontal cortex facilitates cognitive flexibility in tool use (2013)

Recent neuroscience evidence suggests that some higher-order tasks might benefit from a reduction in sensory filtering associated with low levels of cognitive control. Guided by neuroimaging findings, we hypothesized that cathodal (inhibitory) transcranial direct current stimulation (tDCS) will facilitate performance in a flexible use generation task. Participants saw pictures of artifacts and generated aloud either the object’s common use or an uncommon use for it, while receiving cathodal tDCS (1.5 mA) either over left or right PFC, or sham stimulation. A forward digit span task served as a negative control for potential general effects of stimulation. Analysis of voice-onset reaction times and number of responses generated showed significant facilitative effects of left PFC stimulation for the uncommon, but not the common use generation task and no effects of stimulation on the control task. The results support the hypothesis that certain tasks may benefit from a state of diminished cognitive control.
A method for linking fluorescent labels to polynucleotides: application to studies of ribosome-ribonucleic acid interactions (1980)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTA method for linking fluorescent labels to polynucleotides: application to studies of ribosome-ribonucleic acid interactionsDavid E. Draper and Larry GoldCite this: Biochemistry 1980, 19, 9, 1774–1781Publication Date (Print):April 1, 1980Publication History Published online1 May 2002Published inissue 1 April 1980https://pubs.acs.org/doi/10.1021/bi00550a008https://doi.org/10.1021/bi00550a008research-articleACS PublicationsRequest reuse permissionsArticle Views186Altmetric-Citations35LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Transfer Printing of Submicrometer Patterns of Aligned Carbon Nanotubes onto Functionalized Electrodes (2007)

Fluidic aligned submicrometer patterns of acid-treated carbon nanotubes (CNTs) on polydimethysiloxane (PDMS) were transfer printed onto nonflat patterned Au electrodes modified with a self-assembled monolayer (SAM) of 11-amino-1-undecanethiol. The CNT bundles can be transferred in a few seconds at ambient temperature onto the electrodes. The horizontally aligned CNT bundles can be placed in any orientation with respect to the Au electrodes (see figure), and CNT field-effect transistors can be fabricated.
3‐D electrode designs for flow‐through dielectrophoretic systems (2005)

Traditional methods of dielectrophoretic separation using planar microelectrodes have a common problem: the dielectrophoretic force, which is proportional to nabla|E|2, rapidly decays as the distance from the electrodes increases. Recent advances in carbon microelectromechanical systems have allowed researchers to create carbon 3-D structures with relative ease. These developments have opened up new possibilities in the fabrication of complex 3-D shapes. In this paper, the use of 3-D electrode designs for high-throughput dielectrophoretic separation/concentration/filtration systems is investigated. 3-D electrode designs are beneficial because (i) they provide a method of extending the electric field within the fluid. (ii) The 3-D electrodes can be designed so that the velocity field coincides with the electric field distribution. (iii) Novel electrode designs, not based on planar electrodes designs, can be developed and used. The electric field distribution and velocity fields of 3-D electrode designs that are simple extensions of 2-D designs are presented, and two novel electrode designs that are not based on 2-D electrode designs are introduced. Finally, a proof-of-concept experimental device for extraction of nanofibrous carbon from canola oil is demonstrated.
Time-reversal mirrors (1993)

Time-reversal of ultrasonic fields allows a very efficient approach to focus pulsed ultrasonic waves through inhomogeneous media. Time-reversal mirrors (TRMS) are made of large transducer arrays, allowing the incident acoustic field to be sampled, time-reversed and re-emitted. The paper introduces the time-reversal approach in a discussion of the techniques used in optics for focusing through inhomogeneous media. The discussion is extended to ultrasonic pulsed fields where adaptive time delay focusing and TRM focusing are the main techniques of interest. Time reversal focusing of a pulsed wave is optimal in comparison with time delay focusing in the sense that it realizes the spatiotemporally matched filter to the inhomogeneous propagation transfer function between the array and the target. Time-reversal processing also permits choice of any temporal window to be time-reversed, allowing operation in an iterative mode. In multi-target media, such a process converges on the most reflective target. In the case of an extended target, automatic resonances can be achieved. Applications of TRM are numerous and include medical applications (imaging, lithotripsy and hyperthermia) as well as non-destructive testing (NDT) and underwater acoustics. Experimental results obtained with 64 and 128 channel TRMS demonstrate the efficiency of this technique.
First-principles design of a half-filled flat band of the kagome lattice in two-dimensional metal-organic frameworks (2016)

We design from first principles a type of two-dimensional metal-organic framework (MOF) using phenalenyl-based ligands to exhibit a half-filled flat band of the kagome lattice, which is one of a family of lattices that show Lieb-Mielke-Tasaki's flat-band ferromagnetism. Among various MOFs, we find that trans-Au-THTAP (THTAP=trihydroxytriaminophenalenyl) has such an ideal band structure, where the Fermi energy is adjusted right at the flat band due to unpaired electrons of radical phenalenyl. The spin-orbit coupling opens a band gap giving a nonzero Chern number to the nearly flat band, as confirmed by the presence of the edge states in first-principles calculations and by fitting to the tight-binding model. This is a novel and realistic example of a system in which a nearly flat band is both ferromagnetic and topologically nontrivial.
An Overview of Different Chemicals Used in Designing Cement Slurries for Oil and Gas Wells (2015)

Abstract Cement must be designed in a way to ensure acceptable properties such as mix ability, stability, rheology, fluid loss, and adequate thickening time. Different chemicals are used when designing cement slurries. These chemicals are used as retarders, fluid loss additives, dispersants, gas migration additives and expansion additives. Typical examples of compounds used as retarders include: calcium lignosulfonate, sodium lignosulfonate, sodium tetra borate decahydrate (borax), starch derivatives, hydroxyethyl cellulose and weak organic acids. Examples of dispersants are ferrous lignosulfonate, acetone, and polyxythylene sulfonate. Many additives for fluid loss are water soluble polymers such as Vinyl sulfonate based on the 2-acrylamido-2-methyl-propane sulfonic acid. To the best of the author's knowledge, there is no study that compares the performance of different chemicals in cement designs. The objective of this paper is to detail some of the cement chemistry and to go over the chemicals used in cementing oil and gas wells and their mechanisms of actions.
[Microalbuminuria, a marker of artery rigidity and cardiac dysfunction]. (2007)

These data suggest that 1) microalbuminuria may be considered as a marker of artery rigidity, in line with experimental data which indicate the deleterious role of endothelial dysfunction on artery compliance; 2) artery rigidity is a potent determinant of LV afterload and coronary perfusion, in particular in diabetic patients.
Molecular Dissection of the Rho-associated Protein Kinase (p160ROCK)-regulated Neurite Remodeling in Neuroblastoma N1E-115 Cells (1998)

A critical role for the small GTPase Rho and one of its targets, p160ROCK (a Rho-associated coiled coil-forming protein kinase), in neurite remodeling was examined in neuroblastoma N1E-115 cells. Using wild-type and a dominant-negative form of p160ROCK and a p160ROCK-specific inhibitor, Y-27632, we show here that p160ROCK activation is necessary and sufficient for the agonist-induced neurite retraction and cell rounding. The neurite retraction was accompanied by elevated phosphorylation of myosin light chain and the disassembly of the intermediate filaments and microtubules. Y-27632 blocked both neurite retraction and the elevation of myosin light chain phosphorylation in a similar concentration-dependent manner. On the other hand, suppression of p160ROCK activity by expression of a dominant-negative form of p160ROCK induced neurites in the presence of serum by inducing the reassembly of the intermediate filaments and microtubules. The neurite outgrowth by the p160ROCK inhibition was blocked by coexpression of dominant-negative forms of Cdc42 and Rac, indicating that p160ROCK constitutively and negatively regulates neurite formation at least in part by inhibiting activation of Cdc42 and Rac. The assembly of microtubules and intermediate filaments to form extended processes by inhibitors of the Rho-ROCK pathway was also observed in Swiss 3T3 cells. These results indicate that Rho/ROCK-dependent tonic inhibition of cell process extension is exerted via activation of the actomysin-based contractility, in conjunction with a suppression of assembly of intermediate filaments and microtubules in many cell types including, but not exclusive to, neuronal cells.
Vertical Channel ZnO Thin-Film Transistors Using an Atomic Layer Deposition Method (2014)

Vertical channel ZnO thin-film transistors (TFTs) were fabricated on glass and flexible substrates. Conformally deposited thin films prepared using atomic layer deposition were used for the active layer, gate insulator, and gate electrode. Owing to the very short channel (0.5 μm) and very thin (20 nm) gate insulator layer, the ON-current of the vertical channel ZnO TFT was 57 μA at the gate and drain voltages of 3 and 4 V, respectively. Vertical channel oxide TFTs may be promising for device applications with low power consumption.
All-dielectric optical nanoantennas (2012)

We study in detail a novel type of optical nanoantennas made of high-permittivity low-loss dielectric particles. In addition to the electric resonances, the dielectric particles exhibit very strong magnetic resonances at the nanoscale, that can be employed in the Yagi-Uda geometry for creating highly efficient optical nanoantennas. By comparing plasmonic and dielectric nanoantennas, we demonstrate that all-dielectric nanoantennas may exhibit better radiation efficiency also allowing more compact design.
Deposition of Phage Type 4 and 13a Salmonella enteritidis Strains in the Yolk and Albumen of Eggs Laid by Experimentally Infected Hens (2000)

Because egg yolk and albumen differ substantially in their abilities to support bacterial growth, the initial level and location of Salmonella enteritidis deposition are critical for determining whether proposed standards for refrigerating eggs are likely to protect public health by preventing extensive microbial multiplication. In the present study, three groups of laying hens were infected with oral doses of approximately 10(9) cells of different S. enteritidis strains (two were phage type 4 and one was phage type 13a) in two replicate trials. For all three S. enteritidis strains, the incidence of yolk contamination (approximately 2.5% overall) was significantly greater than the incidence of albumen contamination (approximately 0.5% overall). The phage type 13a strain was less often isolated from fecal samples at 2 wk post-inoculation than were the phage type 4 strains, but no significant differences between strains were observed in the incidence of egg contamination. Most freshly laid contaminated eggs contained fewer than 1 S. enteritidis cell/ml of egg yolk or albumen, and no sample contained more than 67 S. enteritidis cells/ml.
Identification of a Chromosome-Targeting Domain in the Human Condensin Subunit CNAP1/hCAP-D2/Eg7 (2002)

CNAP1 (hCAP-D2/Eg7) is an essential component of the human condensin complex required for mitotic chromosome condensation. This conserved complex contains a structural maintenance of chromosomes (SMC) family protein heterodimer and three non-SMC subunits. The mechanism underlying condensin targeting to mitotic chromosomes and the role played by the individual condensin components, particularly the non-SMC subunits, are not well understood. We report here characterization of the non-SMC condensin component CNAP1. CNAP1 contains two separate domains required for its stable incorporation into the complex. We found that the carboxyl terminus of CNAP1 possesses a mitotic chromosome-targeting domain that does not require the other condensin components. The same region also contains a functional bipartite nuclear localization signal. A mutant CNAP1 missing this domain, although still incorporated into condensin, was unable to associate with mitotic chromosomes. Successful chromosome targeting of deletion mutants correlated with their ability to directly bind to histones H1 and H3 in vitro. The H3 interaction appears to be mediated through the H3 histone tail, and a subfragment containing the targeting domain was found to interact with histone H3 in vivo. Thus, the CNAP1 C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes.
An Amino Acid-based Amphoteric Liposomal Delivery System for Systemic Administration of siRNA (2011)

We demonstrate a systematic and rational approach to create a library of natural and modified, dialkylated amino acids based upon arginine for development of an efficient small interfering RNA (siRNA) delivery system. These amino acids, designated DiLA₂ compounds, in conjunction with other components, demonstrate unique properties for assembly into monodisperse, 100-nm small liposomal particles containing siRNA. We show that DiLA₂-based liposomes undergo a pH-dependent phase transition to an inverted hexagonal phase facilitating efficient siRNA release from endosomes to the cytosol. Using an arginine-based DiLA₂, cationic liposomes were prepared that provide high in vivo siRNA delivery efficiency and are well-tolerated in both cell and animal models. DiLA₂-based liposomes demonstrate a linear dose-response with an ED₅₀ of 0.1 mg/kg against liver-specific target genes in BALB/c mice.
Selective bond fission in methyl mercaptan at 193 nm via radial derivative coupling between the 2 1A″ and 1 1A″ adiabatic electronic states (1992)

We investigate the origin of the observed fission of the stronger S–H bond over the weaker C–S bond in CH3SH excited at 193 nm using the complementary techniques of mass-resolved photofragment time-of-flight spectroscopy and emission spectroscopy. The velocities and angular distributions of the CH3S and SH photofragments show that both C–S and S–H bond fission occur on a subpicosecond timescale and impart considerable energy to relative product translation. The dispersed emission from photoexcited CH3SH molecules in a flow cell evidences a progression in the CH3 umbrella mode and combination bands with one quantum in the C–S stretch, but no progression with S–H stretch. Examination of the results with reference to previous ab initio calculations of the excited state surfaces reveals the importance of nonadiabatic coupling in the dissociation dynamics. This is a clear example of selective bond fission upon excitation of an electronic state that is not repulsive in the bond that breaks. We discuss the implication of the work with respect to using the Born–Oppenheimer approximation in reactive collisions near a saddle point along the reaction coordinate.
Neoplastic Characteristics of the DNA Found in the Plasma of Cancer Patients (1989)

About one third of patients with various malignant diseases were found to have extractable amounts of DNA in their plasma whereas no DNA could be detected in normal controls. Using the test established by one of us (M.B.), which is based on decreased strand stability of cancer cell DNA, we have found that several plasma DNA originate from cancer cells.
RSFQ logic/memory family: a new Josephson-junction technology for sub-terahertz-clock-frequency digital systems (1991)

Recent developments concerning the rapid single-flux-quantum (RSFQ) circuit family are reviewed. Elementary cells in this circuit family can generate, pass, memorize, and reproduce picosecond voltage pulses with a nominally quantized area corresponding to transfer of a single magnetic flux quantum across a Josephson junction. Functionally, each cell can be viewed as a combination of a logic gate and an output latch (register) controlled by clock pulses, which are physically similar to the signal pulses. Hand-shaking style of local exchange by the clock pulses enables one to increase complexity of the LSI RSFQ systems without loss of operating speed. The simplest components of the RSFQ circuitry have been experimentally tested at clock frequencies exceeding 100 GHz, and an increase of the speed beyond 300 GHz is expected as a result of using an up-to-date fabrication technology. This review includes a discussion of possible future developments and applications of this novel, ultrafast digital technology.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>