gebhart/patrepeval huggingface dataset:
Newcastle disease virus fusion protein expressed in a fowlpox virus recombinant confers protection in chickens (1990)

A cDNA copy of the RNA encoding the fusion (F) protein of Newcastle disease virus (NDV) strain Texas, a velogenic strain of NDV, was obtained and the sequence was determined. The 1,792-base-pair sequence encodes a protein of 553 amino acids which has essential features previously established for the F protein of virulent NDV strains. These include the presence of three strongly hydrophobic regions and pairs of dibasic amino acids in the pentapeptide Arg-Arg-Gln-Arg-Arg preceding the putative cleavage site. When inserted into a fowlpox virus vector, a glycosylated protein was expressed and presented on the surface of infected chicken embryo fibroblast cells. The F protein expressed by the recombinant fowlpox virus was cleaved into two polypeptides. When inoculated into susceptible birds by a variety of routes, an immunological response was induced. Ocular or oral administration of the recombinant fowlpox virus gave partial protection, whereas both intramuscular and wing-web routes of inoculation gave complete protection after a single inoculation.
Disulfide bond formation in peptides by dimethyl sulfoxide. Scope and applications (1991)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTDisulfide bond formation in peptides by dimethyl sulfoxide. Scope and applicationsJames P. Tam, Cui Rong Wu, Wen Liu, and Jing Wen ZhangCite this: J. Am. Chem. Soc. 1991, 113, 17, 6657–6662Publication Date (Print):August 1, 1991Publication History Published online1 May 2002Published inissue 1 August 1991https://pubs.acs.org/doi/10.1021/ja00017a044https://doi.org/10.1021/ja00017a044research-articleACS PublicationsRequest reuse permissionsArticle Views11180Altmetric-Citations442LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Insights Into Sepsis Therapeutic Design Based on the Apoptotic Death Pathway (2010)

Sepsis remains the leading cause of death in critically ill patients. A major problem contributing to sepsis-related high mortality is the lack of effective medical treatment. Thus, the key goal in critical care medicine is to develop novel therapeutic strategies that will impact favorably on septic patient outcome. While it is generally accepted that sepsis is an inflammatory state resulting from the systemic response to infection, apoptosis is implicated to be an important mechanism of the death of lymphocytes, gastrointestinal and lung epithelial cells, and vascular endothelial cells associated with the development of multiple organ failure in sepsis. The pivotal role of cell apoptosis is now highlighted by multiple studies demonstrating that prevention of cell apoptosis can improve survival in clinically relevant animal models of sepsis. In this review article, we address the scientific rationale for remedying apoptotic cell death in sepsis and propose that therapeutic efforts aimed at blocking cell signaling pathways leading to apoptosis may represent an attractive target for sepsis therapy.
A plasmid-based method to quantitate homologous recombination frequencies in gram-negative bacteria. (1988)

A method is described which enables quantitative evaluation of the ability of gram-negative bacterial cells to perform homologous recombination between DNA molecules. This method is particularly useful in cases where the stringency of rec mutations is to be determined. The procedure is based on a wide-host-range vector (pRK404) in which two unequally truncated and overlapping fragments of the neo gene were cloned. When introduced into gram-negative bacteria either by transformation or by conjugation, molecules of this plasmid, pBX404-7, undergo unequal crossing-over leading to the restoration of a functional neo gene. The stringency of putative rec mutations can thus be determined by measuring the frequency at which kanamycin-resistant colonies appear in bacterial strains harboring pBX404-7.
Genes, Hormones, and Pathways to Breast Cancer (2003)

Much current epidemiologic research aims to find the factors that trigger the development of breast cancer in women who are genetically predisposed to it. In this issue of the Journal, Hamilton and Mack1 add to that rapidly growing literature some intriguing observations from a study of female twins. They find evidence that hormonal exposures at puberty may play an exaggerated part in some women who are likely to be at high genetic risk for breast cancer, even though the responsible genes are unknown. On the basis of a multifaceted examination of different risk factors in various groups of twins, they . . .
Identification of a polypeptide encoded by the avian sarcoma virus src gene. (1978)

Two techniques were used to search for the polypeptide encoded by the avian sarcoma virus (ASV) src gene. First, antiserum from rabbits bearing ASV-induced fibrosarcomas was used to immunoprecipitate a transformation-specific antigen from ASV-transformed chick embryo fibroblasts. This antigen has an apparent molecular weight (Mr) of 60,000. Second, the 3' one-third of the ASV genome, selected by oligo(dT)-cellulose chromatography and sucrose gradient sedimentation, was translated in a mRNA-dependent reticulocyte cell-free lysate. This RNA species programmed the synthesis of a polypeptide that comigrated with the transformation-specific antigen of Mr 60,000 immunoprecipitated from transformed cells. The methionine-containing tryptic peptides from the polypeptides of Mr 60,000 obtained from translation in vitro and from immunoprecipitation were found to be identical upon two-dimensional fractionation.
DETOXIFICATION OF DEOXYNIVALENOL BY BACILLUS STRAINS (2010)

ABSTRACT Deoxynivalenol (DON) poses a health risk to animals and humans consuming contaminated food and feed. Currently, no effective method had been established to detoxify DON. Obtaining strains for the detoxification of DON from probiotic strains and ascertaining the mechanisms of detoxification will be helpful for assuring food safety in food processing. In this research, two Bacillus strains possessing the capability of detoxifying DON were picked out from 59 probiotics by using a two‐run screening. The strategy of adjusting pH and eightfold dilution was successfully applied to eliminate the interferences caused by MRS and nutrition broth in DON determination in competitive indirect enzyme‐linked immunosorbent assay (ELISA) . The capability of detoxification reached a high level when the spent culture supernatant of these two Bacillus were incubated at 37C, 180 rpm for 12 h, the detoxification rate were &gt; 98% and 71.4%, respectively. The rate presented a sharp decrease when the heating temperature changed from 65–75C. The detoxification potential was completely lost, when the heating temperature was 100C, whereas the viable cells were demonstrated as having no detoxification potential. The mechanism for detoxification of DON is related to some thermosensitive substances in the SCS of these two Bacillus. PRACTICAL APPLICATIONS Twenty‐five percent of the global grains were contaminated by mycotoxins, resulting in the problem of quality and safety in food and feeds and also great economic loss. As one of the most popular mycotoxins in maize and wheat, deoxynivalenol attracted few many detoxification approaches. In our study, we have found that two probiotic strains of Bacillus presented stronger detoxification ability of deoxynivalenol, therefore they could be applied in the fermentation process of feedstuffs and fermented food. Furthermore, our research provided a protocol for searching the potential bacteria, which could be used for the detoxification of other mytoxins, e.g., aflatoxin B1, ochratoxin A, zearalenone, etc.
Taurine Analogues; A New Class of Therapeutics: Retrospect and Prospects (2005)

Taurine was discovered more than two hundred years ago from animal sources. It is distributed in both mammals and non-mammals and its content is high in several tissues. For more than a century-and-a-half, taurine was regarded just as an end product of sulfur metabolism. Recently, taurine has been rediscovered and its beneficial effects in processes like epilepsy, hypertension, congestive heart failure and diabetes have been well-documented. It was patented and found some clinical utility, but being an amino acid, therapeutic use confronts limitations like restricted permeability and more. This necessitates the development of pro-drugs (analogues) mainly derivatives of taurine. A large number of taurine derivatives have been reported in the literature with partial to marked activity. Taurine derivatives like taltrimide, acamprosate and tauromustine, are already in the market as anti-convulsant, anti-alcoholic and anti-cancer agents. Many other analogues are effective in experimental models. The in depth analysis of these analogues and their biological actions can provide certain clues for further consideration. In the present review, attempts have been made to provide synopsis, synthesis and symbiosis of chemical and biological actions, which may provide future guidance and facilitate further research in this area. The successful journey of these analogues to clinical utility is a healthy and happy sign and an index of bright future, and we hope that this review will provide enough input to ignite the minds.
The Role of IL-10 in Inflammatory Bowel Disease: "Of Mice and Men" (1999)

Inflammatory bowel disease (IBD) is a generic term typically used to describe a group of idiopathic inflammatory intestinal conditions in humans that are generally divided into Crohn's disease and ulcerative colitis. Although the etiology of these diseases remains unknown, a number of rodent models of IBD have recently been identified, all sharing the concept that the development of chronic intestinal inflammation occurs as a consequence of alterations in the immune system that lead to a failure of normal immunoregulation in the intestine. On the basis of these models, it has been hypothesized that the development of IBD in humans may be related to a dysregulated immune response to normal flora in the gut. Immunodeficient scid mice injected with CD4+ CD45RB(high) T cells and mice deficient in interleukin (IL)-10 (IL-10-/-) are among the rodent models of IBD. In both models, there is inflammation and evidence of a Th1-like response in the large intestine, characterized by CD4+ T-cell and macrophage infiltrates, and elevated levels of interferon-gamma. Because IL-10 is an immunomodulatory cytokine that is capable of controlling Th1-like responses, the role of IL-10 was investigated in these models. IL-10 was shown to be important in regulating the development of intestinal inflammation in both models. These results provided key data that supported initiation of clinical trials evaluating the efficacy of IL-10 in patients with IBD.
ChemInform Abstract: Preparation of Perhalogenated Chlorofluoropropanes by Halogen Exchange in the Liquid and Vapour Phases and Their Isomer Analyses by 19F NMR Spectroscopy. (1989)

Abstract Mixtures of C 3 Cl 5 F 3‐ and C 3 Cl 4 F 4 ‐isomers of defined composition are subjected to several fluorination methods including treatment with SbF 3 Cl 2 under atmospheric and autogenous pressure or with HF in the vapour phase over ferric chloride on charcoal.
Biliary excretion of polystyrene microspheres with covalently linked FITC fluorescence after oral and parenteral administration to male wistar rats (1996)

To further our understanding of microspheres as a drug delivery system, the biliary excretion of covalently linked FITC fluorescence polystyrene microspheres of various diameters was investigated after oral and parenteral administration to male Wistar rats. About 36%, 16% 3% and 1% of the dose was excreted into the bile after parenteral injection of 50 nm, 500 nm, 1 micron and 3 microns diameter microspheres, respectively, over 24 h. In addition, about 30%, 11%, 1%, and 1% of the dose, respectively, was found in the blood at 24 h. After oral administration of 50 nm, 500 nm, and 1 micron microspheres, the recovery was about 18%, 8% and 1% of the dose in the bile and about 9%, 1%, and 0% in the blood, respectively. No 3 microns microspheres were detected in the bile or blood after oral administration. Particles were not detected in the urine of any group tested. Thus, the present study demonstrated that biliary excretion plays an important role in the disposition of microspheres administered by the oral or parenteral routes, and there is a size-related excretion of microspheres into the bile.
Probabilistic skylines on uncertain data (2007)

Uncertain data are inherent in some important applications. Although a considerable amount of research has been dedicated to modeling uncertain data and answering some types of queries on uncertain data, how to conduct advanced analysis on uncertain data remains an open problem at large. In this paper, we tackle the problem of skyline analysis on uncertain data. We propose a novel probabilistic skyline model where an uncertain object may take a probability to be in the skyline, and a p-skyline contains all the objects whose skyline probabilities are at least p. Computing probabilistic skylines on large uncertain data sets is challenging. We develop two efficient algorithms. The bottom-up algorithm computes the skyline probabilities of some selected instances of uncertain objects, and uses those instances to prune other instances and uncertain objects effectively. The top-down algorithm recursively partitions the instances of uncertain objects into subsets, and prunes subsets and objects aggressively. Our experimental results on both the real NBA player data set and the benchmark synthetic data sets show that probabilistic skylines are interesting and useful, and our two algorithms are efficient on large data sets, and complementary to each other in performance. 1.
The immunochemical detection and quantitation of intracellular ubiquitin-protein conjugates. (1985)

ATP, ubiquitin-dependent proteolysis proceeds through covalent intermediates between target proteins destined for degradation and the 8,600-Da polypeptide ubiquitin. The ubiquitin moiety therefore represents a sensitive immunological marker for the specificity and function of this novel post-translational modification. Methods are described for the immunochemical detection of ubiquitin conjugates immobilized on nitrocellulose filters following electrophoretic transfer from sodium dodecyl sulfate-polyacrylamide gels. A further modification allows quantitation of conjugated ubiquitin to the exclusion of free polypeptide. Comparisons of conjugate pools in rabbit reticulocytes and erythrocytes demonstrate that 83 +/- 3% and 31 +/- 0.2%, respectively, of total intracellular ubiquitin exists covalently bound to target proteins. Similar large proportions of conjugated ubiquitin were found in three tissue culture cell lines. Subcellular fractionation revealed that 25% of total ubiquitin conjugates of reticulocytes sediment with the 22,000 X g stromal fraction with the remainder found in the 100,000 X g supernatant. In contrast, significant levels of erythrocyte ubiquitin conjugates occur only in the 100,000 X g supernatant, suggesting ubiquitin-mediated proteolysis actively degrades stromal components lost during terminal maturation. Reticulocytes retain their full complement of active ubiquitin during maturation indicating the concomitant decline in energy-dependent proteolysis does not result from ubiquitin inactivation. That the lower level of ubiquitin conjugates and the accompanying rate of energy-dependent proteolysis in erythrocytes is a consequence of limited substrate availability is suggested by observed increases in conjugate pools and induction of specific ubiquitin-protein adducts on incubation with either phenylhydrazine or sodium nitrite.
TMEM16A Inhibitors Reveal TMEM16A as a Minor Component of Calcium-activated Chloride Channel Conductance in Airway and Intestinal Epithelial Cells (2010)

TMEM16A (ANO1) functions as a calcium-activated chloride channel (CaCC). We developed pharmacological tools to investigate the contribution of TMEM16A to CaCC conductance in human airway and intestinal epithelial cells. A screen of ∼110,000 compounds revealed four novel chemical classes of small molecule TMEM16A inhibitors that fully blocked TMEM16A chloride current with an IC(50) < 10 μM, without interfering with calcium signaling. Following structure-activity analysis, the most potent inhibitor, an aminophenylthiazole (T16A(inh)-A01), had an IC(50) of ∼1 μM. Two distinct types of inhibitors were identified. Some compounds, such as tannic acid and the arylaminothiophene CaCC(inh)-A01, fully inhibited CaCC current in human bronchial and intestinal cells. Other compounds, including T16A(inh)-A01 and digallic acid, inhibited total CaCC current in these cells poorly, but blocked mainly an initial, agonist-stimulated transient chloride current. TMEM16A RNAi knockdown also inhibited mainly the transient chloride current. In contrast to the airway and intestinal cells, all TMEM16A inhibitors fully blocked CaCC current in salivary gland cells. We conclude that TMEM16A carries nearly all CaCC current in salivary gland epithelium, but is a minor contributor to total CaCC current in airway and intestinal epithelia. The small molecule inhibitors identified here permit pharmacological dissection of TMEM16A/CaCC function and are potential development candidates for drug therapy of hypertension, pain, diarrhea, and excessive mucus production.
GaAs solar cells grown on Si substrates for space use (2001)

Abstract GaAs single‐junction and InGaP/GaAs multi‐junction thin‐film solar cells fabricated on Si substrates have great potential for high‐efficiency, low‐cost, lightweight and large‐area space solar cells. Heteroepitaxy of GaAs thin films on Si substrates has been examined and high‐efficiency GaAs thin‐film solar cells with total‐area efficiencies of 18·3% at AM0 and 20·0% at AM 1·5 on Si substrates (GaAs‐on‐Si solar cells) have been fabricated. In addition, 1‐MeV electron irradiation damage to GaAs‐on‐Si cells has been studied. The GaAs‐on‐Si cells are found to show higher end‐of‐life efficiency than the conventional GaAs cells fabricated on GaAs substrates (GaAs‐ on‐GaAs cells) under high‐fluence 1‐MeV electron irradiation of more than 1 × 10 15 cm −2 . The first space flight to make use of them has been carried out. Forty‐eight 2 × 2 cm GaAs‐on‐Si cells with an average AM0 total‐area efficiency of 16·9% have been evaluated in the Engineering Test Satellite No.6 (ETS‐VI). The GaAs‐on‐Si cells have been demonstrated to be more radiation‐resistant in space than GaAs‐on‐GaAs cells and 50, 100 and 200‐μm‐thick Si cells. These results show that the GaAs‐on‐Si single‐junction and InGaP/GaAs‐on‐Si multi‐junction cells have great potential for space applications. Copyright © 2001 John Wiley &amp; Sons, Ltd.
The Volatile Oil ofTagetes argentinaCabrera (1993)

ABSTRACT Analysis of the oil of Tagetes argentina Cabrera by gas chromatography confirmed that (Z)-ocimenone (43.62–45.59%) and (E)-ocimenone (37.29–40.38%) were the main components. Lesser amounts of (Z)-β-ocimene (1.46–1.49%), (E)-β-ocimene (2.00–7.26%), dihydrotagetone (3.82–6.57%), (Z)-tagetone (1.29–1.77%) and (E)-tagetone (1.30–1.87%) were also found in this oil
Alpha-1-Antitrypsin Deficiency: Importance of Proteasomal and Autophagic Degradative Pathways in Disposal of Liver Disease–Associated Protein Aggregates (2010)

Alpha-1-antitrypsin (AT) deficiency is the most common genetic cause of liver disease in children. The primary pathological issue is a point mutation that renders an abundant hepatic secretory glycoprotein prone to altered folding and a tendency to polymerize and aggregate. However, the expression of serious liver damage among homozygotes is dependent on genetic and/or environmental modifiers. Several studies have validated the concept that endogenous hepatic pathways for disposal of aggregation-prone proteins, including the proteasomal and autophagic degradative pathways, could play a key role in the variation in hepatic damage and be the target of the modifiers. Exciting recent results have shown that a drug that enhances autophagy can reduce the hepatic load of aggregated protein and reverse fibrosis in a mouse model of this disease.
Application of capillary electrophoresis to the analyses of carbohydrates and glycoproteins. (1996)

Carbohydrates are the least inappropriate group of compounds to be analyzed by capillary electrophoresis (CE), because normally they have no electric charge. However, they can be analyzed by this method by adding various devices. There are a number of methods for conversion of carbohydrates to positively or negatively charged derivatives, which can be analyzed directly by zone electrophoresis. In-situ conversion with certain kinds of oxyacid ions, such as the borate ion, and metal ions, such as alkaline earth metal ions, also form ionic complexes from carbohydrates and derivatives. Furthermore, introduction of hydrophobic groups allows separation based on solubilization of the derivatives into ionic micells, thus permitting micellar electrokinetic chromatography. This paper describes not only such theoretical aspect of CE but its application to the analysis of oligosaccharides in glycoproteins. It gives a number of examples of successful application.
Rheologic properties of senescent erythrocytes: loss of surface area and volume with red blood cell age (1992)

The rheologic properties of senescent erythrocytes have been examined using two models of red blood cell (RBC) aging. In the rabbit, aged erythrocytes were isolated after biotinylation, in vivo aging, and subsequent recovery on an avidin support. Aged RBCs from the mouse were obtained using the Ganzoni hypertransfusion model that suppresses erythropoiesis for prolonged periods of time allowing preexisting cells to age in vivo. In both cases, the aged erythrocytes were found by ektacytometry to have decreased deformability due to diminished surface area and cellular dehydration. The aged rabbit erythrocytes were further characterized by micropipette methods that documented an average surface area decrease of 10.5% and a volume decrease of 8.4% for the cells that were 50 days old. Because both the surface area and volume decreased with cell age, there was little change in surface-to-volume ratio (sphericity) during aging. The aged cells were found to have normal membrane elasticity. In addition, human RBCs were fractionated over Stractan density gradients and the most dense cells were found to have rheologic properties similar to those reported for the aged RBCs from rabbits and mice, although the absolute magnitude of the changes in surface area and volume were considerably greater for the human cells. Thus, stringent density fractionation protocols that result in isolation of the most dense 1% of cells can produce a population of human cells with rheologic properties similar to senescent cells obtained in other species. The data indicate that progressive loss of cell area and cell dehydration are characteristic features of cell aging.