gebhart/patrepeval huggingface dataset:
Transparent threads: resource sharing in SMT processors for high single-thread performance (2002)

Simultaneous Multithreading (SMT) processors achieve high processor throughput at the expense of single-thread performance. This paper investigates resource allocation policies for SMT processors that preserve, as much as possible, the single-thread performance of designated threads, while still permitting other threads to share resources. Since background threads on such an SMT machine have a near-zero performance impact on foreground threads, we refer to the background threads as transparent threads. Transparent threads are ideal for performing low-priority or non-critical computations, with applications in process scheduling, subordinate multithreading, and on-line performance monitoring.To realize transparent threads, we propose three mechanisms for maintaining the transparency of background threads: slot prioritization, background thread instruction-window partitioning, and background thread flushing. In addition, we propose three mechanisms to boost background thread performance without sacrificing transparency: aggressive fetch partitioning, foreground thread instruction-window partitioning, and foreground threadflushing. We implement our mechanisms on a detailed simulator of an SMT processor, and evaluate them using 8 benchmarks, including 7 from the SPEC CPU2000 suite. Our results show when cache and branch predictor interference are factored out, background threads introduce less than 1% performance degradation on the foreground thread. Furthermore, maintaining the transparency of background threads reduces their throughput by only 23% relative to an equal priority scheme.To demonstrate the usefulness of transparent threads, we study Transparent Software Prefetching (TSP), an implementation of software data prefetching using transparent threads. Due to its near-zero overhead, TSP enables prefetch instrumentation for all loads in a program, eliminating the need for profiling. TSP, without any profile information, achieves a 9.52% gain across 6 SPEC benchmarks, whereas conventional software prefetching guided by cache-miss profiles increases performance by only 2.47%.
Prototype implementation and evaluation of a multibank embedded memory architecture in programmable logic (2004)

Advances in microelectronics fabrication technology have created new opportunities for system designers to employ embedded memory in system-on-chip (SoC) designs. This paper discusses a multibank embedded DRAM architecture and its prototype implementation in programmable logic. The architecture features a central memory controller with a request table that exploits concurrency among multiple banks and enables issuing requests and transferring responses in parallel. An implementation with four banks using an array size of 256/spl times/256 consumes 18% of the logic capacity in a Xilinx XCV2000E chip and 40% of the embedded SRAM memory blocks that are used to emulate DRAM storage. The functionality of our prototype implementation is verified with a logic analyzer.
Molecular Cloning and Expression of cDNA Encoding the Rat UDP-N-Acetylglucosamine:α-6-D-Mannoside β-1,2-N-Acetylglucosaminyltransferase II (1995)

UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N-acetylglucosaminyltransferase II (EC 2.4.1.143) (GnT II) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis analysis of the enzyme purified from rat liver revealed a polypeptide of 42 kDa. Amino acid sequences were obtained from the N terminus and a tryptic peptide. Overlapping cDNA clones coding for the full-length rat GnT II were obtained. The complete nucleotide sequence revealed a 1326-base pair open reading frame that codes for a polypeptide of 442 amino acids, including a presumptive N-terminal membrane-anchoring domain. The region of cDNA coding for the C-terminal 389 amino acids of rat GnT II was linked in frame to a cDNA segment encoding the cleavable signal sequence of the human interleukin-2 receptor and transiently expressed in COS-7 cells. A 77-fold enhancement of GnT II activity over a control carrying the GnT II cDNA out-of-frame was detected in the culture medium at 72 h after transfection. 1H-NMR spectroscopy confirmed that the oligosaccharide synthesized in vitro by the recombinant enzyme was the product of GnT II activity. These data verify the identity of the cloned GnT II cDNA and demonstrate that the C-terminal region of the protein includes the catalytic domain.
Homozygous codeletion and differential decreased expression of p15INK4b, p16INK4a-alpha and p16INK4a-beta in mouse lung tumor cells. (1996)

The genes of murine cyclin D-dependent kinase inhibitors, p15INK4b and p16INK4a, are located in a region of chromosome 4 where overlapping deletions were found in lung adenocarcinomas. The p16INK4a gene uniquely consists of alternative first exons (E1alpha and E1beta), which are spliced to exon 2 in alternative reading frames to either encode p16INK4a (alpha form) or another potential tumor suppressor, p19ARF (beta form). We examined 99 lung adenocarcinomas of C3H/HeJ x A/J F1(C3AF1) and A/J x C3H/HeJ F1(AC3F1) mouse hybrids and 18 (13 metastatic, 5 nonmetastatic) tumorigenic mouse lung epithelial cell lines for p15INK4b and p16INK4a gene inactivation. Homozygous codeletion occurred in eight of the 13 (62%) metastatic, four of the five (80%) nonmetastatic cell lines, but in only six of 99 (6%) adenocarcinomas. Neither p15INK4b nor p16INK4a gene was individually deleted in any of the tumors or cell lines, and all deletions of the p16INK4a gene extended into exon 2, which would be expected to disrupt the functions of both p16INK4a and p19ARF. We also detected no intragenic mutations of either gene in 44 tumors that displayed loss of heterozygosity at the p16INK4a locus or in any of the cell lines. Transcript levels of p16INK4a-alpha, p16INK4a-beta and p15INK4b also were examined in each of the cell lines that retained copies of these genes. Whereas an immortal mouse lung epithelial cell line (E10) and two metastatic tumor cell lines (LM1 and E9) expressed p16INK4a-beta and p15INK4b mRNA, the alpha transcript of p16INK4a was detected in only the LM1 cell line. These results suggest that both p15INK4b and p16INK4a (alpha and beta) are targets of inactivation in mouse lung tumorigenesis.
Molecular receptive range variation among mouse odorant receptors for aliphatic carboxylic acids (2009)

The ability of mammals to identify and distinguish among many thousands of different odorants suggests a combinatorial use of odorant receptors, with each receptor detecting multiple odorants and each odorant interacting with multiple receptors. Numerous receptors may be devoted to the sampling of particularly important regions of odor space. In this study, we explore the similarities and differences in the molecular receptive ranges of four mouse odorant receptors (MOR23-1, MOR31-4, MOR32-11 and MOR40-4), which have previously been identified as receptors for aliphatic carboxylic acids. Each receptor was expressed in Xenopus oocytes, along with Galpha(olf) and the cystic fibrosis transmembrane regulator to allow electrophysiological assay of receptor responses. We find that even though these receptors are relatively unrelated, there is extensive overlap among their receptive ranges. That is, these receptors sample a similar region of odor space. However, the receptive range of each receptor is unique. Thus, these receptors contribute to the depth of coverage of this small region of odor space. Such a group of receptors with overlapping, but distinct receptive ranges, may participate in making fine distinctions among complex mixtures of closely related odorant compounds.
Application of splay trees to data compression (1988)

The splay-prefix algorithm is one of the simplest and fastest adaptive data compression algorithms based on the use of a prefix code. The data structures used in the splay-prefix algorithm can also be applied to arithmetic data compression. Applications of these algorithms to encryption and image processing are suggested.
Sequence of Reactant Combination Alters the Course of the Staudinger Reaction of Azides with Acyl Derivatives. Bimanes. 30. (1996)

The Staudinger reaction of azides has now been followed by NMR and other spectroscopic techniques. syn-(Azidomethyl,methyl)(methyl,methyl)bimane (1) and Ph(3)P form a triazaphosphadiene intermediate 2 and then the bimane P-triphenyliminophosphorane 3. The iminophosphorane reacts with an acyl chloride to yield an iminophosphonium salt 4 which then forms the oxazaphosphetane 13. The latter undergoes an electrocyclic reversion to form the phosphine oxide and the chloroimines 7E and 7Z, the last being hydrolyzed to the (acylamido)bimane 6. This set of reactions constitutes the "iminophosphorane pathway". A significant diversion of the reaction path to an (N-alkylamino)phosphonium chloride 8 occurs through reaction of 4 with H(2)O present in the CDCl(3) and through reaction of 3 with HCl. A different azide (alpha-azido-o-xylene 1b) produces the (acylamido)-o-xylene as the sole product. A less sterically hindered phosphine (tri-2-furylphosphine) reacts more slowly to form the iminophosphorane 3a from the azidobimane 1. Reaction of the bimane P-tri-2-furyliminophosphorane with acyl chloride gives only the (acylamido)bimane 6. If the acyl chloride is mixed with 1, followed by addition of the Ph(3)P, the triazaphosphadiene adduct 5 is formed via the triazaphosphadiene. The adduct 5 is converted rapidly into a six-membered cyclic compound 11. The latter either loses nitrogen to yield 6 via 7Z and 7E and the phosphine oxide or loses chloride 10 through a novel chloride-induced elimination reaction from its protonated form. The change in procedure thus results in a dramatic change in the reaction pathway, a reaction set that constitutes the "triazaphosphadiene adduct pathway". In the case of alpha-azido-o-xylene, alpha-chloro-o-xylene (10b) is the only product. The reactions of the azides 1 or 1b with tri-2-furylphosphine also produce chlorides as the major products accompanied by some acetamido derivatives. The nucleophile-induced reaction explains a "surprising result" (formation of ester rather than amide) reported by Sahlberg et al. (Sahlberg, C.; Jackson, A. M.; Claesson, A. Acta Chem. Scand. 1988, B42, 556-562). The intramolecular "aza-Wittig" reaction may depend on the nucleophilicity of the triazaphosphadiene. A comprehensive mechanistic scheme for the Staudinger reaction of azides is conveniently divided into the following: (A) formation of the triazaphosphadiene (Scheme 1), (B) reactions of the triazaphosphadiene (Scheme 2), and (C) reactions via the iminophosphorane (Scheme 3). Some approximate kinetic parameters are reported for some of the reactions.
Preparation of an Attenuated Dengue 4 (341750 Carib) Virus Vaccine (1990)

To determine safety and immunogenicity, a single 0.5 ml dose of a monovalent live-attenuated dengue (DEN) 4 (341750 Carib) vaccine was given sc to 3 groups of flavivirus nonimmune volunteers in increasing concentrations. Two recipients received 10(3) plaque forming units (PFU)/dose (1:100 dilution of stock vaccine). One remained asymptomatic, but became viremic between days 12 and 15, experienced a mild elevation of temperature (37.4 degrees C), and developed DEN-4 specific antibody. Neither recipient of the 10(4) PFU became infected. Eight volunteers then received undiluted vaccine (10(5) PFU). Viremia and antibody (neutralizing, hemagglutination inhibition, and IgM) developed in 5 of the 8 (63%). These 5 volunteers also developed a scarcely noticeable macular, blanching rash and minimal temperature elevations (37.3, 38.1, 37, 37.9, and 37.9 degrees C). Clinically insignificant decreases in total white blood cell, lymphocyte, and polymorphonuclear cell counts and an elevation in mononuclear cell counts occurred in association with viremia. This vaccine is safe, reasonably immunogenic, and suitable for further evaluation.
An investigation of spectral feature partitioning for replay attacks detection (2017)

Replay attacks from unseen utterances poses a significant challenge in Anti-Spoofing Detection. In this paper, we propose a statistical measure based on the Rayleigh Quotient in order to investigate a feature partition capable of discerning genuine and playback speech under unseen conditions. The Log- Magnitude Spectrum (LMS) of the utterances is used in this study. Using the proposed measure, we analyze the frequency bands of the LMS based on the amount of discriminative information between the scatter matrices of the genuine and spoof utterances. This allows us to determine the optimal frequency bands required for replay attacks detection. In addition, we further investigate the effects of training our models using voiced and unvoiced portions of the utterances. We conducted our experiments based on the ASVspoof 2017 database. On the development set, our partitioned LMS feature based on the whole utterance yields a 3.8% EER. After utilizing just the unvoiced portions of the utterances, the EER is further decreased to 3.27% while our baseline using the Constant Q Cepstral Coefficients (CQCC) as a feature is at 10.21%. The evaluation results also confirms the effectiveness of our approach.
Direct-Write Vapor Sensors on FR4 Plastic Substrates (2007)

Functioning chemiresistor vapor sensing devices on plastic substrates were prepared using low-temperature direct-Xwrite techniques. Interdigitated Ag electrodes were first deposited onto printed circuit boards using a mesoscale maskless materials deposition system (M3D). These Ag lines were 20-50 mum wide and 8-10 mum thick with good adhesion to the substrate and electrical conductivity of 4-12 muOmegamiddotcm. Deposition of chemoselective polymer/C black composite transducer layers on such lines gave sensors that responded to nerve gas stimulant (dimethylmethyl phosphonate) thereby demonstrating the efficacy of direct write for this application. A new approach to localized direct-write deposition, termed Enhanced M3D, allows the formation of sharply defined line edges and enables printing of conductors that operate at radio frequency with low signal loss. The direct-write approaches described here are amenable to future deposition on more interesting substrates and development of more sensitive transducers, orthogonal sensor arrays and an integrated power source/communication platform that might constitute the basis for radio-frequency identification (RFID) sensor tags
Improvement in Psoriasis With Rosiglitazone in a Diabetic and a Nondiabetic Patient (2005)

The authors conducted a prospective, open-label, pilot trial of the effects of the antidiabetic thiazolidinedione (TZD) rosiglitazone in two patients with moderate to severe plaque psoriasis. Case 1: A lean, euglycemic 43-year-old nondiabetic man with a 2-year history of plaque psoriasis presented with lesions involving 10% of his body surface (Figures 1A, 1B, 1C). He had no other chronic or acute medical problems. He had previously been managed sporadically with topical triamcinolone acetonide, an intermediate-strength glucocorticoid, and was off antipsoriatic medication for 5 months. He was started on rosiglitazone p.o., 8 mg q.d. After 10 weeks on rosiglitazone, the lesions developed increased erythema, spreading, and shedding of scale (Figures 2A, 2B, 2C). After an additional 26 weeks, the lesions had largely disappeared (Figures 3A, 3B, 3C). The patient remained euglycemic throughout the study. His liver function enzymes (alanine transferase [ALT] and aspartate transferase [AST]) remained normal throughout the study: ALT, 23 IU/L; AST, 47 IU/L before treatment; ALT, 25 IU/L; AST, 33 IU/L after treatment. There were no adverse events. Case 2: An overweight 68-year-old woman (body mass index, 29 kg/m2; with a 12-year history of type 2 diabetes and 5-year history of psoriasis presented with generalized plaque psoriasis over 20% of her body, including two large, thick, silvery plaques with the texture of leather over the lower part of the back (Figure 4A). She was given rosiglitazone p.o., 4 mg b.i.d. for 24 weeks, which resulted in significant improvement in psoriasis (Figure 4B). After an additional 26 weeks on rosiglitazone, the plaques had cleared on her back (Figure 4C) and over her entire body, including scalp, ears, and posterior forearms (not shown). Her glycemic control improved (hemoglobin A1c decreased from 7.7% to 7.2%) and liver function remained normal throughout the study (ALT, 24 IU/L; AST, 14 IU/L before treatment; and ALT, 26 IU/L; AST, 15 IU/L after treatment). There were no adverse events.
A Systematic Approach to the Design Optimization of Light‐Absorbing Indenofluorene Polymers for Organic Photovoltaics (2012)

Abstract The synthesis and optimization of new photovoltaic donor polymers is a time‐consuming process. Computer‐based molecular simulations can narrow the scope of materials choice to the most promising ones, by identifying materials with desirable energy levels and absorption energies. In this paper, such a retrospective analysis is presented of a series of fused aromatic push–pull copolymers. It is demonstrated that molecular calculations do indeed provide good estimates of the absorption energies measured by UV–vis spectroscopy and of the ionization potentials measured by photoelectron spectroscopy in air. Comparing measured photovoltaic performance of the polymer series to the trend in efficiencies predicted by computation confirms the validity of this approach.
Endogenous pyrogens made by rabbit peritoneal exudate cells are identical with lymphocyte-activating factors made by rabbit alveolar macrophages. (1980)

Purified endogenous pyrogen (EP), isolated in one laboratory from stimulated rabbit peritoneal exudate cells (PEC), was compared with purified lymphocyte activating factor (LAF), isolated in another laboratory from stimulated rabbit alveolar macrophages (AM). Both EP and LAF occurred in two forms, one with an isoelectric point (pI) of 7.3 to 7.4, the other with a pI of 4.6 to 4.7. Both forms of EP and LAF had m.w. of 13,000 to 16,000 daltons as judged by gel filtration. Both forms of EP had LAF activity, and both forms of LAF were pyrogenic. The pI 7.3 EP, which is known to have an -SH group essential for its biologic activity, bound to Thiol Sepharose columns and could be eluted with mercaptoethanol. The pI 7.3 LAF behaved in exactly the same way. Furthermore, antisera from three different goats were available that completely blocked the pyrogenicity of pI 7.3 EP in vivo; these sera also blocked the pI 7.3 LAF activity in vitro. The pI 4.6 EP and LAF did not bind to Thiol Sepharose columns, nor were they inhibited by any of the antisera that blocked the pI 7.3 EP and LAF. Moreover, isoelectric focusing of pI 4.6 EP in very shallow gradients revealed microheterogeneity with sharp peaks of EP activity observed at pH 4.6 and 4.7. Analysis for LAF activity showed an identical microheterogeneity. These results are consistent with the idea that EP and LAF are identical.
Catalytic Trimerization of Ethene with Highly Active Cyclopentadienyl−Arene Titanium Catalysts (2002)

The mono(cyclopentadienyl−arene)titanium complexes [η5-C5H3R−(bridge)−Ar]TiCl3, activated by methylalumoxane (MAO) cocatalyst, form a family of highly active catalysts for the trimerization of ethene, giving 1-hexene as the main product. Concomitant cotrimerization of ethene and 1-hexene, to give mainly 5-methylnon-1-ene, is also observed. The selectivity for trimerization depends on the presence of a pendant arene group on the cyclopentadienyl ligand and the nature of the bridge between these two ligand moieties. In the absence of a pendant arene, polyethene is the main product. The highest activity and selectivity for trimerization was observed for catalysts with a disubstituted C1 bridge between the cyclopentadienyl and arene ligand moieties. A SiMe3 substituent on the cyclopentadienyl ligand improves catalyst activity and selectivity, whereas methyl substitution of the arene decreases activity. Nevertheless, combining cyclopentadienyl SiMe3 substitution with arene Me substitution gives rise to a catalyst with the highest activity and selectivity, evidence of the strongly nonlinear additivity of ligand substituent effects in this system. The cyclopentadienyl−arene ligand is likely to exhibit hemilabile behavior during catalysis, stabilizing intermediates by η6 coordination and dissociating or slipping to make room for the incoming substrate. The presence of two pendant arene groups on the cyclopentadienyl ligand diminishes the activity of the catalyst but greatly enhances its stability.
Evaluation of De-O-Acetylated Meningococcal C Polysaccharide-Tetanus Toxoid Conjugate Vaccine in Infancy: Reactogenicity, Immunogenicity, Immunologic Priming, and Bactericidal Activity against O-Acetylated and De-O-Acetylated Serogroup C Strains (2001)

The polysaccharide capsule of serogroup C Neisseria meningitidis (MenC) has been integral to vaccine development. Licensed MenC vaccines contain the O-acetylated (OAc+) form of polysaccharide. Some MenC strains have de-O-acetylated (OAc-) polysaccharide, which may affect antibody specificity and functional activity when used in a vaccine. We evaluated an OAc-MenC conjugate-tetanus toxoid conjugate (MCC-TT) vaccine given concomitantly with whole-cell diphtheria-tetanus-pertussis, Haemophilus influenzae type b, and oral polio immunization in 83 infants at 2, 3, and 4 months of age. Serum bactericidal activities (SBA) against OAc+ and OAc- MenC strains and OAc+ and OAc- polysaccharide-specific immunoglobulin G (IgG) levels were evaluated. MCC-TT vaccine was well tolerated. All infants produced SBA titers of > or = 8 after a single dose at 2 months of age. The SBA geometric mean titer for OAc+ strain C11 increased from 2.7 (95% confidence interval [CI] 2.2 to 3.2) to 320 (95% CI, 237 to 432), 773 (95% CI, 609 to 982), and 1,063 (95% CI, 856 to 1319) after one, two, and three doses of MCC-TT, respectively. OAc- IgG levels were twice as high as OAc+ IgG levels after the primary series of MCC-TT vaccine, and the SBA was significantly higher against the OAc- MenC strain. Antibody responses to booster vaccination with either OAc+ MenC polysaccharide vaccine (MACP) or a fourth dose of MCC-TT at 14 months of age provided evidence of immunologic memory. The acetylation status of the booster vaccine influenced the specificity of the response, with significantly higher OAc- IgG levels and SBA after MCC-TT vaccine compared to MACP vaccine but similar OAc+ antibody levels. MCC-TT vaccine is highly immunogenic and primes for immunologic memory against OAc+ and OAc- MenC strains in infancy.