gebhart/patrepeval huggingface dataset:
Efficient insertional mutagenesis in lactococci and other gram-positive bacteria (1996)

In lactococci, the study of chromosomal genes and their regulation is limited by the lack of an efficient transposon mutagenesis system. We associated the insertion sequence ISS1 with the thermosensitive replicon pG+ host to generate a mutagenic tool that can be used even in poorly transformable strains. ISS1 transposition is random in different lactococcal strains as well as in Enterococcus faecalis and Streptococcus thermophilus. High-frequency random insertion (of about 1%) obtained with this system in Lactococcus lactis allows efficient mutagenesis, with typically one insertion per cell. After ISS1 replicative transposition, the chromosome contains duplicated ISS1 sequences flanking pG+ host. This structure allows cloning of the interrupted gene. In addition, efficient excision of the plasmid leaves a single ISS1 copy at the mutated site, thus generating a stable mutant strain with no foreign markers. Mutants obtained by this transposition system are food grade and can thus be used in fermentation processes.
Definition and management of anemia in patients infected with hepatitis C virus (2006)

Chronic infection with hepatitis C virus (HCV) can progress to cirrhosis, hepatocellular carcinoma, and end-stage liver disease. The current best treatment for HCV infection is combination therapy with pegylated interferon and ribavirin. Although this regimen produces sustained virologic responses (SVRs) in approximately 50% of patients, it can be associated with a potentially dose-limiting hemolytic anemia. Hemoglobin concentrations decrease mainly as a result of ribavirin-induced hemolysis, and this anemia can be problematic in patients with HCV infection, especially those who have comorbid renal or cardiovascular disorders. In general, anemia can increase the risk of morbidity and mortality, and may have negative effects on cerebral function and quality of life. Although ribavirin-associated anemia can be reversed by dose reduction or discontinuation, this approach compromises outcomes by significantly decreasing SVR rates. Recombinant human erythropoietin has been used to manage ribavirin-associated anemia but has other potential disadvantages. Viramidine, a liver-targeting prodrug of ribavirin, has the potential to maintain the virologic efficacy of ribavirin while decreasing the risk of hemolytic anemia in patients with chronic hepatitis C.
[An experimental study on systemic inflammatory response syndrome induced by subeschar tissue fluid]. (2001)

STF might induce the development of SIRS in rats, which further lead to the development of MODS.
Longitudinal Tracking of Muscular Power Changes of NCAA Division I Collegiate Women Gymnasts (2004)

Gymnastics relies upon power as a critical component of sports-specific fitness. The purpose of this study was to monitor long-term training adaptations in the power of National Collegiate Athletics Association Division I women gymnasts. Twenty members of a women's gymnastic team (aged 18-22) were tracked over 3 years with the first year a baseline year of testing. Whole body power for the counter-movement (CMJ) and squat (SJ) vertical jump was obtained via force plate analyses at 2 assessment time points during each year (February and November). Results showed significant (p < or = 0.05) and continued increases in peak power output in the CMJ and SJ at each biannual assessment. Improvements of 46% (+1010 W) for the CMJ and 43% (+900 W) for the SJ were observed at the end of the tracking period. Peak power for the CMJ and SJ were recorded at 3210 W (+/-350 W) and 3000 W (+/-152 W), respectively. Associated improvements in the time to peak power of 36% (-0.239 second) and 38% (-0.151 second) were also found for the CMJ and SJ. There were no significant changes in body mass or total skinfold thickness, however, a shift toward improved fat free mass (i.e., lean muscle mass) was apparent. These data underscore the importance that specificity, and more importantly power development, should play in the conditioning of collegiate women gymnasts' training programs.
Glycosylation-independent targeting enhances enzyme delivery to lysosomes and decreases storage in mucopolysaccharidosis type VII mice (2004)

Enzyme-replacement therapy is an established means of treating lysosomal storage diseases. Infused therapeutic enzymes are targeted to lysosomes of affected cells by interactions with cell-surface receptors that recognize carbohydrate moieties, such as mannose and mannose 6-phosphate, on the enzymes. We have tested an alternative, peptide-based targeting system for delivery of enzymes to lysosomes in a murine mucopolysaccharidosis type VII (MPS VII) model. This strategy depends on the interaction of a fragment of insulin-like growth factor II (IGF-II), with the IGF-II binding site on the bifunctional, IGF-II cation-independent mannose 6-phosphate receptor. A chimeric protein containing a portion of mature human IGF-II fused to the C terminus of human beta-glucuronidase was taken up by MPS VII fibroblasts in a mannose 6-phosphate-independent manner, and its uptake was inhibited by the addition of IGF-II. Furthermore, the tagged enzyme was delivered effectively to clinically significant tissues in MPS VII mice and was effective in reversing the storage pathology. The tagged enzyme was able to reduce storage in glomerular podocytes and osteoblasts at a dose at which untagged enzyme was much less effective. This peptide-based, glycosylation-independent lysosomal targeting system may enhance enzyme-replacement therapy for certain human lysosomal storage diseases.
[PI3-kinase inhibitors LY294002 and wortmannin have different effects on proliferation of murine embryonic stem cells]. (2006)

Murine embryonic stem (mES) cells can proliferate independently of the presence of growth factors in the medium. It is yet unknown what intrinsic activity triggers cell cycle events in mES cells. Here we investigated the contribution of the PI3-kinase cascade to autonomous proliferation of mES cell using PI3-kinase inhibitors wortmannin and LY294002. Wortmannin displays a weaker inhibitory effect on phosphorylation of PI3-kinase pathway target PKB as compared with LY294002, and does not downregulate mES cells proliferation, while LY294002 causes a strong decrease in the share of cells in S-phase and accumulation of cells in G1 phase. Both inhibitors cause significant decrease in cyclin D1 amount. The treatment with LY294002, rather than with wortmannin results in a decrease of cyclin E amount and cyclin E-assossiated kinase activity. In mES cells, inactivation of PI3-kinase-dependent pathway and G1 arrest are not accompanied by induction of p27kip 1 transcription and accumulation of this inhibitor of cyclin-cdk complexes at the protein level, implying that these events accomplished by some p27kip 1-independent mechanism. Both LY294002 and wortmannin cause apoptotic death of mES cells and downregulate the growth of population. Thus, inactivation of PI3-kinase in mES cells may lead to apoptosis rather than to cell cycle arrest.
Differential roles of regulatory light chain and myosin binding protein-C phosphorylations in the modulation of cardiac force development (2010)

Phosphorylation of myosin regulatory light chain (RLC) by myosin light chain kinase (MLCK) and myosin binding protein-C (cMyBP-C) by protein kinase A (PKA) independently accelerate the kinetics of force development in ventricular myocardium. However, while MLCK treatment has been shown to increase the Ca(2+) sensitivity of force (pCa(50)), PKA treatment has been shown to decrease pCa(50), presumably due to cardiac troponin I phosphorylation. Further, MLCK treatment increases Ca(2+)-independent force and maximum Ca(2+)-activated force, whereas PKA treatment has no effect on either force. To investigate the structural basis underlying the kinase-specific differential effects on steady-state force, we used synchrotron low-angle X-ray diffraction to compare equatorial intensity ratios (I(1,1)/I(1,0)) to assess the proximity of myosin cross-bridge mass relative to actin and to compare lattice spacings (d(1,0)) to assess the inter-thick filament spacing in skinned myocardium following treatment with either MLCK or PKA. As we showed previously, PKA phosphorylation of cMyBP-C increases I(1,1)/I(1,0) and, as hypothesized, treatment with MLCK also increased I(1,1)/I(1,0), which can explain the accelerated rates of force development during activation. Importantly, interfilament spacing was reduced by 2 nm (3.5%) with MLCK treatment, but did not change with PKA treatment. Thus, RLC or cMyBP-C phosphorylation increases the proximity of cross-bridges to actin, but only RLC phosphorylation affects lattice spacing, which suggests that RLC and cMyBP-C modulate the kinetics of force development by similar structural mechanisms; however, the effect of RLC phosphorylation to increase the Ca(2+) sensitivity of force is mediated by a distinct mechanism, most probably involving changes in interfilament spacing.
Cochannel interference in wireless LANs and fuzzy clustering (2002)

In this paper a technique is described that permits increased receiver tolerance to uncoordinated CCI in a wireless LAN environment. The technique uses supervised clustering to determine the signal states due to ISI and a form of unsupervised fuzzy clustering for finding the signal states due to CCI. Using a decision feedback approach, it is shown that the receiver is capable of operating in high levels of CCI, providing usable error rates.
Mechanism of inhibition of Raf-1 by protein kinase A. (1994)

The cytoplasmic Raf-1 kinase is essential for mitogenic signalling by growth factors, which couple to tyrosine kinases, and by tumor-promoting phorbol esters such as 12-O-tetradecanoylphorbol-13-acetate, which activate protein kinase C (PKC). Signalling by the Raf-1 kinase can be blocked by activation of the cyclic AMP (cAMP)-dependent protein kinase A (PKA). The molecular mechanism of this inhibition is not precisely known but has been suggested to involve attenuation of Raf-1 binding to Ras. Using purified proteins, we show that in addition to weakening the interaction of Raf-1 with Ras, PKA can inhibit Raf-1 function directly via phosphorylation of the Raf-1 kinase domain. Phosphorylation by PKA interferes with the activation of Raf-1 by either PKC alpha or the tyrosine kinase Lck and even can downregulate the kinase activity of Raf-1 previously activated by PKC alpha or amino-terminal truncation. This type of inhibition can be dissociated from the ability of Raf-1 to associate with Ras, since (i) the isolated Raf-1 kinase domain, which lacks the Ras binding domain, is still susceptible to inhibition by PKA, (ii) phosphorylation of Raf-1 by PKC alpha alleviates the PKA-induced reduction of Ras binding but does not prevent the downregulation of Raf-1 kinase activity by PKA and (iii) cAMP agonists antagonize transformation by v-Raf, which is Ras independent.
CD133+ hepatic stellate cells are progenitor cells (2006)

Hepatic stellate cells (HSC) play an important role in the development of liver fibrosis. Here, we report that HSC express the stem/progenitor cell marker CD133 and exhibit properties of progenitor cells. CD133+ HSC of rats were selected by specific antibodies and magnetic cell sorting. Selected cells displayed typical markers of HSC, endothelial progenitor cells (EPC), and monocytes. In cell culture, CD133+ HSC transformed into alpha-smooth muscle actin positive myofibroblast-like cells, whereas application of cytokines known to facilitate EPC differentiation into endothelial cells led to the formation of branched tube-like structures and induced expression of the endothelial cell markers endothelial nitric oxide synthase and vascular-endothelial cadherin. Moreover, cytokines that guide stem cells to develop hepatocytes led to the appearance of rotund cells and expression of the hepatocyte markers alpha-fetoprotein and albumin. It is concluded that CD133+ HSC are a not yet recognized progenitor cell compartment with characteristics of early EPC. Their potential to differentiate into endothelial or hepatocyte lineages suggests important functions of CD133+ HSC during liver regeneration.
Expression of specific high capacity mevalonate transport in a Chinese hamster cell variant. (1987)

A variant of a low density lipoprotein receptor-negative Chinese hamster ovary (CHO) cell mutant was isolated using a nutritional selection called MeLoCo. The variant, designated met-18b-2, internalized and metabolized mevalonate at rates 10-40 times greater than the progenitor cells from which they were derived. The extent of incorporation of radioactivity from [3H]mevalonate into steroidal and nonsteroidal mevalonate derivatives, including modified proteins, was much greater in met-18b-2 cells than in their progenitors. Much of the internalized [3H]mevalonate was converted to nonpolar lipids. Unlike wild type CHO cells or the receptor-negative progenitors, met-18b-2 cells were killed by high concentrations of mevalonate (greater than 6 mM) in the culture medium. Regulation of 3-hydroxy-3-methylglutaryl-CoA reductase activity and cholesterol esterification was dramatically more sensitive to mevalonate in met-18b-2 cells than in progenitor cells. In cell extracts, both the rates of conversion of [3H]mevalonate to cholesterol and mevalonate kinase activities were similar for met-18b-2 and progenitor cells. In contrast to progenitor cells, met-18b-2 cells internalized [3H]mevalonate with high capacity (Km approximately 0.3 mM) kinetics. The increased uptake of [3H]mevalonate was temperature dependent and highly specific. These results suggest that met-18b-2 cells express a mevalonate transport activity that is not normally expressed by CHO cells. This activity may be due to a specific mevalonate transporter that is differentially expressed in specialized tissues. Because intracellular mevalonate in met-18b-2 cells can be labeled to high specific activity, these cells should prove very useful in further characterizing the structures of mevalonate derivatives and their metabolism.
Highly Efficient Green‐Emitting Phosphorescent Iridium Dendrimers Based on Carbazole Dendrons (2006)

Abstract Green‐emitting iridium dendrimers with rigid hole‐transporting carbazole dendrons are designed, synthesized, and investigated. With second‐generation dendrons, the photoluminescence quantum yield of the dendrimers is up to 87 % in solution and 45 % in a film. High‐quality films of the dendrimers are fabricated by spin‐coating, producing highly efficient, non‐doped electrophosphorescent organic light‐emitting diodes (OLEDs). With a device structure of indium tin oxide/poly(3,4‐ethylenedioxythiophene):poly(styrene sulfonic acid)/neat dendrimer/1,3,5‐tris(2‐ N ‐phenylbenzimidazolyl)benzene/LiF/Al, a maximum external quantum efficiency (EQE) of 10.3 % and a maximum luminous efficiency of 34.7 cd A –1 are realized. By doping the dendrimers into a carbazole‐based host, the maximum EQE can be further increased to 16.6 %. The integration of rigid hole‐transporting dendrons and phosphorescent complexes provides a new route to design highly efficient solution‐processable dendrimers for OLED applications.
Measurement driven deployment of a two-tier urban mesh access network (2006)

Multihop wireless mesh networks can provide Internet access over a wide area with minimal infrastructure expenditure. In this work, we present a measurement driven deployment strategy and a data-driven model to study the impact of design and topology decisions on network-wide performance and cost. We perform extensive measurements in a two-tier urban scenario to characterize the propagation environment and correlate received signal strength with application layer throughput. We find that well-known estimates for pathloss produce either heavily overprovisioned networks resulting in an order of magnitude increase in cost for high pathloss estimates or completely disconnected networks for low pathloss estimates. Modeling throughput with wireless interface manufacturer specifications similarly results in severely underprovisioned networks. Further, we measure competing, multihop flow traffic matrices to empirically define achievable throughputs of fully backlogged, rate limited, and web-emulated traffic. We find that while fully backlogged flows produce starving nodes, rate-controlling flows to a fixed value yields fairness and high aggregate throughput. Likewise, transmission gaps occurring in statistically multiplexed web traffic, even under high offered load, remove starvation and yield high performance. In comparison, we find that well-known noncompeting flow models for mesh networks over-estimate network-wide throughput by a factor of 2. Finally, our placement study shows that a regular grid topology achieves up to 50 percent greater throughput than random node placement.
Percutaneous Intramyocardial Delivery of Mesenchymal Stem Cells Induces Superior Improvement in Regional Left Ventricular Function Compared with Bone Marrow Mononuclear Cells in Porcine Myocardial Infarcted Heart (2014)

This preclinically relevant study suggests that when delivered by percutaneous (transcatheter) intramyocardial injection, MSC might be more effective than BMMNC to improve ischemia and reperfusion after AMI.
Remote thermometry with thermographic phosphors: Instrumentation and applications (1997)

The temperature-dependent characteristics of fluorescence of several rare-earth-doped ceramic phosphors has made these materials the focus of a major effort in the field of noncontact thermometry over the past few decades. These “thermographic phosphors,” e.g., Y2O3:Eu, have been used for remote measurements of the temperatures of both static and moving surfaces, and have performed many other tasks that standard sensors (thermocouples, thermistors, etc.) cannot. The range of usefulness of this class of materials extends from cryogenic temperatures to those approaching 2000 °C. The instrumentation needed for this type of thermometry has followed many different lines of development, and this evolution has produced a wide variety of both field- and laboratory-grade systems that are now described in the literature. In general, the technique offers high sensitivity (≈0.05 °C), robustness (e.g., stability of the sensor sample in harsh environments), and NIST traceability. In addition, such systems have been successfully adapted to make remotely sensed measurements of pressure, heat flux, shear stress, and strain. In this review, we summarize the physical mechanisms that form the basis for the technique, and then catalog and discuss the instrumentation-related aspects of several different remote thermometry systems that employ thermographic phosphors as the sensors.
On the birth and fate of bacterial division sites (1998)

Thanks to genetics, to the study of protein-protein interactions and to direct viewing of subcellular structures by the use of immunofluorescence and green fluorescent protein (GFP) fusions, the organization of the constriction apparatus of walled bacteria is gradually coming to light. The tubulin-like protein FtsZ assembles as a ring around the site of constriction and operates as an organizer and activator of septum-shaping proteins. Much less is known about the factors specifying the location of FtsZ rings. Circumstantial evidence favours the presence at future ring positions of fixed elements, the potential division sites (PDS), before FtsZ assembles. FtsZ polymerization is initiated from a point on a PDS, the nucleation site, still to be identified, and proceeds bidirectionally around the cell. We hypothesize that new PDS are specified in a manner that depends on the functioning of an active chromosome partition apparatus. This view is supported by the fact that formation of mid-cell PDS requires initiation of DNA replication, and by recent studies supporting the existence of a specialized partition apparatus in a variety of microorganisms. Although PDS may be specified directly by the partition apparatus, indirect localization linked to compartmentalized gene expression during chromosome segregation is also possible. Once created, PDS are used in a regulated manner, and several mechanisms normally operate to direct constriction to selected PDS at the correct time. One, dedicated to the permanent suppression of polar PDS, rests on the minicell suppression system and involves a protein that is able to discriminate between polar and non-polar sites. Another is involved in asymmetric site selection at the early stages of sporulation in Bacillus subtilis. Finally, a mechanism observed only in certain multi-nucleated cells appears to favour division at non-polar PDS related to the most ancient replication/DNA segregation events.
A Simple Construction of a Bile Acid Based Dendritic Light Harvesting System (2005)

[structure: see text] A facile synthesis of a cholic acid derived dendritic structure labeled with nine naproxens and a single anthracene is reported. This multichromophoric, novel dendritic construct acts as an efficient molecular light harvester.
Embracing Hr – E-Communication has Changed the Role of Hr in Today’s Globalized World (2011)

Technology & HR-Leverage one for the other “Technology and HR are enablers of business. Integration of the two would mean not only harmonious co-existence but also leveraging one for the other. Leveraging of technology for HR would mean digitizing the mundane HR activities and automating the back office and transactional activities related to recruitment, performance management, career planning, and succession planning, training and knowledge management. The leverage plays a key role in helping world-class HR executives generate significant return on investment in the form of decreased costs, less staff, and a wide range of other efficiency and effectiveness benefits. Another area of HR, which is leveraging technology, is employee development. Programmed learning (PL) i.e. learning at its own pace is one of the most effective ways of adult learning. Companies can harness the knowledge of its employees by cataloging and hosting it on the intranet. Talk to 'Big-5' or not 'so big' consulting companies you will find that main stay of their business is the knowledge repository. Leveraging HR for technology implies managing change associated with technology by way of E-communication, E-training, E-recruiting, and E-employee book. Thus they can play complementary roles.
white paper The Electronic Product Code (EPC) (2001)

For over twenty-five years, the Universal Product Code (UPC or “bar code”) has helped streamline retail checkout and inventory processes. As one of the most successful standards ever developed, UPC coding and labeling methods have grown to include numerous elements of the supply chain. The emergence of the Internet, the digitalization of information and the globalization of business offer new possibilities for product identification and tracking. To take advantage of this network infrastructure, we propose a new object identification scheme, the Electronic Product Code (EPC), which uniquely identifies objects and facilitates tracking throughout the product life cycle. The EPC is a short, simple and extensible code designed for efficient referencing to networked information.