gebhart/patrepeval huggingface dataset:
Cerebral-evoked potential responses following direct vagal and esophageal electrical stimulation in humans (1993)

Cerebral evoked responses following direct electrical stimulation of the vagus and esophagus were compared in 8 epileptic subjects and with those recorded after esophageal stimulation in 12 healthy nonepileptic controls. Direct vagal stimulation was performed using a left cervical vagal pacemaker, which is used in the treatment of epilepsy. Esophageal stimulation was obtained with the use of an esophageal assembly incorporating two electrodes positioned 5 and 20 cm orad to the lower esophageal sphincter. Evoked potential responses were recorded with the use of 20 scalp electrodes. The evoked potential responses consisted of three distinct negative peaks and were similar with the use of either vagal or esophageal stimulation. The measured conduction velocity of the afferent response was 7.5 m/s in epileptic subjects and 10 m/s in healthy controls, suggesting that afferent conduction is through A delta-fibers rather than slower C afferent fibers. We conclude that the cortical-evoked potential responses following esophageal electrical stimulation are comparable to direct electrical stimulation of the vagus nerve and involve mostly A delta-fibers. This approach provides a method for the assessment of vagal afferent gastrointestinal sensory pathways in health and disease.
Neutrophil chemorepulsion in defined interleukin-8 gradients in vitro and in vivo (2005)

We report for the first time that primary human neutrophils can undergo persistent, directionally biased movement away from a chemokine in vitro and in vivo, termed chemorepulsion or fugetaxis. Robust neutrophil chemorepulsion in microfluidic gradients of interleukin-8 (IL-8; CXC chemokine ligand 8) was dependent on the absolute concentration of chemokine, CXC chemokine receptor 2 (CXCR2), and was associated with polarization of cytoskeletal elements and signaling molecules involved in chemotaxis and leading edge formation. Like chemoattraction, chemorepulsion was pertussis toxin-sensitive and dependent on phosphoinositide-3 kinase, RhoGTPases, and associated proteins. Perturbation of neutrophil intracytoplasmic cyclic adenosine monophosphate concentrations and the activity of protein kinase C isoforms modulated directional bias and persistence of motility and could convert a chemorepellent to a chemoattractant response. Neutrophil chemorepulsion to an IL-8 ortholog was also demonstrated and quantified in a rat model of inflammation. The finding that neutrophils undergo chemorepulsion in response to continuous chemokine gradients expands the paradigm by which neutrophil migration is understood and may reveal a novel approach to our understanding of the homeostatic regulation of inflammation.
THE POPULATION FREQUENCIES OF SPECIES AND THE ESTIMATION OF POPULATION PARAMETERS (1953)

A random sample is drawn from a population of animals of various species. (The theory may also be applied to studies of literary vocabulary, for example.) If a particular species is represented r times in the sample of size N, then r/N is not a good estimate of the population frequency, p, when r is small. Methods are given for estimating p, assuming virtually nothing about the underlying population. The estimates are expressed in terms of smoothed values of the numbers nr (r= 1, 2, 3, ...), where nr is the number of distinct species that are each represented r times in the sample. (nr may be described as ‘the frequency of the frequency r’.) Turing is acknowledged for the most interesting formula in this part of the work. An estimate of the proportion of the population represented by the species occurring in the sample is an immediate corollary. Estimates are made of measures of heterogeneity of the population, including Yule's ‘characteristic’ and Shannon's ‘entropy’. Methods are then discussed that do depend on assumptions about the underlying population. It is here that most work has been done by other writers. It is pointed out that a hypothesis can give a good fit to the numbers nr but can give quite the wrong value for Yule's characteristic. An example of this is Fisher's fit to some data of Williams's on Macrolepidoptera.
Evaluation of Treatment-Effect Heterogeneity Using Biomarkers Measured on a Continuous Scale: Subpopulation Treatment Effect Pattern Plot (2010)

The discovery of biomarkers that predict treatment effectiveness has great potential for improving medical care, particularly in oncology. These biomarkers are increasingly reported on a continuous scale, allowing investigators to explore how treatment efficacy varies as the biomarker values continuously increase, as opposed to using arbitrary categories of expression levels resulting in a loss of information. In the age of biomarkers as continuous predictors (eg, expression level percentage rather than positive v negative), alternatives to such dichotomized analyses are needed. The purpose of this article is to provide an overview of an intuitive statistical approach-the subpopulation treatment effect pattern plot (STEPP)-for evaluating treatment-effect heterogeneity when a biomarker is measured on a continuous scale. STEPP graphically explores the patterns of treatment effect across overlapping intervals of the biomarker values. As an example, STEPP methodology is used to explore patterns of treatment effect for varying levels of the biomarker Ki-67 in the BIG (Breast International Group) 1-98 randomized clinical trial comparing letrozole with tamoxifen as adjuvant therapy for postmenopausal women with hormone receptor-positive breast cancer. STEPP analyses showed patients with higher Ki-67 values who were assigned to receive tamoxifen had the poorest prognosis and may benefit most from letrozole.
Relationships of matrix metalloproteinases and their inhibitors to cartilage proteoglycan and collagen turnover and inflammation as revealed by analyses of synovial fluids from patients with rheumatoid arthritis (2001)

Our observations provide new insights into the complex changes in cartilage turnover and PMN influx in RA joints.
Usefulness of dexmedetomidine to prevent emergence agitation in a patient with Krabbe disease: a case report (2018)

The perioperative administration of dexmedetomidine was useful to prevent emergence agitation, hypertension, and resultant postoperative bleeding in a pediatric patient with Krabbe disease. Three repeated anesthetic management using inhalation anesthesia were completed uneventfully without muscle relaxants.
Fever: Optimal Responsive View Synchronisation (2018)

Byzantine Agreement (BA) is a key component in many distributed systems. While Dolev and Reischuk have proven a long time ago that quadratic communication complexity is necessary for worst-case runs, the question of what can be done in practically common runs with fewer failures remained open. In this paper we present the first Byzantine Broadcast algorithm with O(n(f+1)) communication complexity in a model with resilience of n = 2t+1, where 0 ≤ f ≤ t is the actual number of process failures in a run. And for BA with strong unanimity, we present the first optimal-resilience algorithm that has linear communication complexity in the failure-free case and a quadratic cost otherwise.
Molecular biology of tumor cells (1985)

This book contains four sections, each consisting of several papers. The section titles are: Activated Genes and Oncogenes; Promotors and Growth Factors for Induction of Cancer; Surface Changes in Neoplastic Transformation and Transformation-Associated Proteins; and Differentiation of Normal and Malignant Cells.
Dispersion, Wave Propagation and Efficiency Analysis of Nanowire Solar Cells (2009)

We analyze the electromagnetic properties of InP/InAs nanowire solar cells for different geometries. We address both eigenvalue calculations to determine the wave propagation as well as source problems to simulate direct perpendicular illumination by three-dimensional finite element calculations. We demonstrate the validity of a 2D waveguide modal analysis as a method of estimating the results of the computationally far more demanding 3D analysis. The resulting data is employed in a detailed balance analysis in order to determine the optimum set of bandgap energies for a single-junction and dual-junction cell as well as the corresponding efficiency limit. The efficiency of the nanowire design can approach the efficiency of conventional thin-film designs despite the low volume fill-factor.
Discrete subspecies of human low density lipoproteins are heterogeneous in their interaction with the cellular LDL receptor. (1991)

The low density lipoproteins (LDL) of human plasma consist of a series of discrete particle subspecies of distinct physicochemical, immunological, and hydrodynamic properties. Such structural differences are intimately linked to the metabolic heterogeneity of circulating LDL in vivo. The current studies were designed to evaluate and compare the interaction of discrete LDL subspecies from normolipidemic subjects with the LDL receptor. Plasma LDL of d 1.019-1.063 g/ml from healthy males were fractionated into 15 subspecies of defined physicochemical characteristics by isopycnic density gradient ultracentrifugation as described earlier (Chapman et al., J. Lipid Res. 1988. 29: 442-458). The major LDL subspecies, LDL-5 to LDL-10, exhibited an overall range in density from 1.0244 to 1.0435 g/ml; individual subspecies increased in density by increments of 0.027 (LDL-5), 0.026 (LDL-6), 0.030 (LDL-7), 0.031 (LDL-8), 0.035 (LDL-9), and 0.042 g/ml (LDL-10), respectively. Taken together, these subspecies accounted for approximately 70% of the total mass of LDL of d 1.019-1.063 g/ml; their cholesterol: protein ratios decreased from 1.70 to 1.12 and particle size from 275 to 260 A with increase in density. ApoB-100 was the unique protein component in subspecies 5-8, with trace amounts (less than 0.2% of apoLDL) of both apoA-I and apoE in subspecies 9 and 10. The interaction of individual LDL subspecies with the LDL receptor on cultured human U-937 monocyte-like cells was compared by determining receptor binding affinities at 4 degrees C. Scatchard analysis of specific binding curves demonstrated a single class of binding site for each subspecies. The lowest dissociation constants were displayed by LDL subspecies 6 (Kd 5.71 nM), 7 (Kd 5.24 nM) and 8 (Kd 4.67 nM), while subspecies 5, 9, and 10 displayed significantly higher Kd values (8.35, 7.20, and 6.87 nM, respectively). Competitive displacement studies at 4 degrees C, in which unlabeled subspecies from the same gradient series competed for binding with 125I-labeled LDL subspecies, confirmed the relative binding affinities of these subspecies. As the hydrophobic lipid core of LDL undergoes a thermotropic transition at approximately 37 degrees C, which may in turn influence the surface structure of the particle, internalization and degradation studies were performed at 37 degrees C. No effect of temperature was detectable; again, LDL subspecies at each extreme of the density distribution (LDL-5 and LDL-10) displayed significantly lower binding affinities for the LDL receptor than that from the peak region (LDL-7).(ABSTRACT TRUNCATED AT 400 WORDS)
Primary structure of ovine hypothalamic somatostatin-28 and somatostatin-25. (1980)

The primary structure of the NH2-terminally extended somatostatins isolated from ovine hypothalamic extracts, one containing 28 residues and the other 25, has been determined. The structure of somatostatin-28 is Ser-Ala-Asn-Ser-Asn-Pro-Ala-Met-Ala-Pro-Arg-Glu-Arg-Lys-Ala-Gly-Cys-Lys-Asn-Phe-Phe-Trp-Lys-Thr-Phe-Thr-Ser-Cys-OH; the shorter one, somatostatin-25, has the same sequence as somatostatin-28 except that the first three NH2-terminal residues are deleted. The two peptides as isolated were found to be oxidized at the methionine residue to the methionine sulfoxide. Their structures were established by subjecting the native peptides to direct sequence analysis in a Beckman 890C sequencer and identifying the released phenylthiohydantoin derivatives by high-performance liquid chromatography. Their structures were confirmed by trypsin digestion and isolation of all the tryptic peptides, followed by amino acid analysis of the tryptic fragments. Moreover, some of the tryptic peptides were matched with their respective synthetic replicates on high-performance liquid chromatography.
A Novel Coupled Quantum Well Structure with Low-Driving Voltage, Low Absorption Loss and Large Field-Induced Refractive Index Change (2005)

A Novel Coupled Quantum Well Structure with Low-Driving Voltage, Low Absorption Loss and Large Field-Induced Refractive Index Change, Xu Zhi-Xin, Jiang Xiao-Qing, Xu Yi-Gang, Yang Ai-Ling, Wang Ming-Hua, Zhou Qiang, Li Xi-Hua, Yang Jian-Yi
The association of mammographic density with ductal carcinoma in situof the breast: the Multiethnic Cohort (2006)

The similar strength of association for mammographic density with breast DCIS and invasive breast cancer supports the hypothesis that both diseases may have a common etiology.
Architectural decomposition of video decoders for many core architectures (2012)

The microprocessor industry trend towards many-core architectures introduced the necessity of devising appropriately scalable applications. In video decoding, the main challenges are the optimized partitioning of decoder operations, efficient tracking of dependencies and resource allocation/synchronization for multiple threads. In this paper, we propose a decoder architecture that replaces the conventional monolithic design with a pipelined structure. Bit stream decoding and image processing are separated from each other by means of a Meta Format Stream. The Meta Format is forward-oriented and self contained and multistandard capable, so that processing of Meta Streams is independent of the originating bit stream. Our approach does not require special coding settings and is applicable to accelerated decoding of any standards-compliant bit stream. A H.264 multiprocessing proposal is presented as a case study for the potential our our decoder architecture. The case study combines coarse grained frame-level parallel decoding of the bit stream with fine-grained macroblock level parallelism in the image processing stage. The proposed H.264 decoder achieved speedup factors of up to 7.6 on an 8 core machine with 2-way SMT. We are reporting actual decoding speeds of up to 150 frames per second in 2160p-resolution.
Induction of control genes in intestinal gluconeogenesis is sequential during fasting and maximal in diabetes (2004)

We studied in rats the expression of genes involved in gluconeogenesis from glutamine and glycerol in the small intestine (SI) during fasting and diabetes. From Northern blot and enzymatic studies, we report that only phosphoenolpyruvate carboxykinase (PEPCK) activity is induced at 24 h of fasting, whereas glucose-6-phosphatase (G-6-Pase) activity is induced only from 48 h. Both genes then plateau, whereas glutaminase and glycerokinase strikingly rebound between 48 and 72 h. The two latter genes are fully expressed in streptozotocin-diabetic rats. From arteriovenous balance and isotopic techniques, we show that the SI does not release glucose at 24 h of fasting and that SI gluconeogenesis contributes to 35% of total glucose production in 72-h-fasted rats. The new findings are that 1) the SI can quantitatively account for up to one-third of glucose production in prolonged fasting; 2) the induction of PEPCK is not sufficient by itself to trigger SI gluconeogenesis; 3) G-6-Pase likely plays a crucial role in this process; and 4) glutaminase and glycerokinase may play a key potentiating role in the latest times of fasting and in diabetes.
Specific in vitro initiation of transcription on the adenovirus type 2 early and late EII transcription units. (1981)

Three transcription units are present in the adenovirus type 2 region EII. Transcription units EIIaE and EIIaL encode the mRNA for the 72,000-dalton DNA binding protein, early and late in the lytic cycle, respectively, and transcription unit EIIb encodes the mRNA for the protein that binds to the 5' termini of adenovirus DNA. By using a cell-free transcription system in the presence of purified RNA polymerase B (or II), we have obtained specific initiation of transcription from both the EIIaE promoter, which does not contain a T-A-T-A box, and the EIIaL promoter, which does. In addition, we have identified a new EII T-A-T-A box promoter that is located close to the early non-T-A-T-A box promoter and is used both in vivo and in vitro.
A versatile vector modulator design for MMIC (2002)

A single-chip, monolithic microwave integrated circuit (MMIC) vector modulator designed for use in an X-band, phased array radar system is described. The design principle is capable of addressing octave bandwidths and frequencies up into the millimeter-wave region. The circuit is novel in that it is purely passive, using unpowered FETs as the control elements. Therefore, it is low noise and should be able to handle relatively large RF signal levels of up to 1 W. Analog control of the vector extends over a range of more than 30 dB for amplitude and over 0-360 degrees for phase. Swept frequency, measured phase errors are lower than +or-10 degrees for a 10% instantaneous bandwidth anywhere in X-band (8-12 GHz).< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Michael-Type Addition Reactions for the In Situ Formation of Poly(vinyl alcohol)-Based Hydrogels (2006)

Michael-type addition reactions offer the possibility to obtain in situ formation of polymeric hydrogels in the absence of a radical mechanism for the networking process. We explored such a synthetic route for obtaining a poly(vinyl alcohol) (PVA)-based hydrogel as a potential biomaterial for applications in vitro-retinal replacement surgery. The presence of radicals in the reaction medium can represent a risk for in situ surgical treatment. To circumvent this problem we have applied nucleophilic addition to ad hoc modified PVA macromers. The gel formation has been studied with respect to the timing required in this surgery and in terms of the structural characteristics of the obtained network.
Thermal conductivity of silicone rubber filled with ZnO (2007)

Abstract Thermal conductivities of silicone rubber filled with ZnO in a wide volume range were measured in order to study the effect of formed conductive particle chains on thermal conductivities. With the increasing of content of ZnO particles in silicone rubber, the amount of formed conductive chains increases and the conductive chains tend linearly to increase the thermal conductivity of the composite. The experimental results obtained were also analyzed using the Nielsen and Agari models to explain the effect of ZnO filler on the formation of thermal conductive networks. Thermal conductivities of a polymer filled with high volume content of particles evidently increased with the adding of small size fillers. The scanning electron microscopy (SEM) showed that percolation threshold has been reached at 31.4 vol% ZnO filler loading, and the hybrid fillers are more densely packed than single fillers in the silicone rubber matrix. There occurs a positive temperature coefficient (PTC) phenomenon in thermal resistance in composites of silicone rubber filled with ZnO. POLYM. COMPOS., 28:125–130, 2007. © 2007 Society of Plastics Engineers
Human cytotoxic T cell clones directed against herpes simplex virus-infected cells. III. Analysis of viral glycoproteins recognized by CTL clones by using recombinant herpes simplex viruses. (1985)

Human cytotoxic T cell (CTL) clones specific for herpes simplex virus (HSV) type 1- and type 2-infected cells were generated and were analyzed with regard to the viral glycoproteins they recognize on autologous HSV-infected cells. By use of target cells infected with wild-type HSV strains, a gC deletion mutant of HSV-1, and HSV-1 X HSV-2 intertypic recombinants, some HSV-1-specific CTL clones were found to be directed against L region-encoded gA/B-1, and others against S region-encoded glycoproteins (gD-1 or gE-1). Some HSV-2-specific clones were found to be directed against L region-encoded gC-2, whereas others were directed against S region-encoded glycoproteins (gD-2, gE-2, or gG). These findings provide direct evidence that several HSV glycoproteins that are expressed on the surface of HSV-infected cells serve as recognition structures for human HSV-specific CTL.
Sizing femtogram amounts of dsDNA by single-molecule counting (2015)

Modern molecular-biology applications raise renewed interest in sizing minute-amounts of DNA. In this work we utilize single-molecule imaging with in situ size calibration to accurately analyze the size and mass distribution of DNA samples. We exploit the correlation between DNA length and its fluorescence intensity after staining in order to assess the length of individual DNA fragments by fluorescence microscopy. Synthetic reference DNA standards are added to the investigated sample before staining and serve as internal size calibrators, supporting a robust assay for accurate DNA sizing. Our results demonstrate the ability to reconstruct the exact length distribution in a complex DNA sample by sizing a subset containing only femtogram amounts of DNA, thus, outperforming microfluidic gel electrophoresis which is the currently accepted gold standard. This assay may find useful applications for genetic analysis where the exact size distribution of DNA molecules is critical and the availability of genetic material is limited.
Subpixel eye gaze tracking (2003)

This paper addresses the accuracy problem of an eye gaze tracking system. We first analyze the technical barrier for a gaze tracking system to achieve a desired accuracy, and then propose a subpixel tracking method to break this barrier. We present new algorithms for detecting the inner eye corner and the center of an iris at subpixel accuracy, and we apply these new methods in developing a real-time gaze tracking system. Experimental results indicate that the new methods achieve an average accuracy within 1.4/spl deg/ using normal eye image resolutions.
Realization of GaInP/Si Dual-Junction Solar Cells With 29.8% 1-Sun Efficiency (2016)

Combining a Si solar cell with a high-bandgap top cell reduces the thermalization losses in the short wavelength and enables theoretical 1-sun efficiencies far over 30%. We have investigated the fabrication and optimization of Si-based tandem solar cells with 1.8-eV rear-heterojunction GaInP top cells. The III–V and Si heterojunction subcells were fabricated separately and joined by mechanical stacking using electrically insulating optically transparent interlayers. Our GaInP/Si dual-junction solar cells have achieved a certified cumulative 1-sun efficiency of 29.8% ± 0.6% (AM1.5g) in four-terminal operation conditions, which exceeds the record 1-sun efficiencies achieved with both III–V and Si single-junction solar cells. The effect of luminescent coupling between the subcells has been investigated, and optical losses in the solar cell structure have been addressed.