gebhart/patrepeval huggingface dataset:
Impact of chromatic and spherical aberration on the focusing of ultrashort light pulses by lenses (1993)

Focusing of ultrashort light pulses with single lenses is analyzed by taking into account the unavoidable interplay between chromatic and spherical aberration simultaneously for the first time to our knowledge. The spatial intensity distribution is mainly affected by spherical aberration, whereas the temporal distribution is determined by both aberrations. The impact on second-harmonic generation for femtosecond pulse measurements is discussed. For example, the presence of spherical aberration allows one to record the correct autocorrelation of a 10-fs pulse even if chromatic aberration alone would cause a half-width of the autocorrelation function of 40 fs.
Backbone-substituted DTPA ligands for yttrium-90 radioimmunotherapy (1991)

Four new bifunctional diethylenetriaminepentaacetic acid (DTPA) ligands were synthesized to provide an improved chelating agent for radioimmunotherapy with 90Y. The new DTPA ligands contained a 4-isothiocyanatobenzyl group (pSCNBz) substituted onto the carbon backbone of DTPA for use in linkage to immunoprotein. Methyl groups were strategically incorporated onto the backbone of the ligands via a peptide route to provide 2-pSCNBz-5-Me-DTPA (2) and 3-Me-6-pSCNBz-DTPA (3). Addition of these functionalities was expected to sterically hinder the release of radiometal from the chelate. A new monosubstituted ligand, 3-pSCNBz-DTPA (4), was also prepared in order to determine whether a shift in position of the linking group had an effect on the in vivo stability of the yttrium complex. Additionally, by modification of known methods, a disubstituted DTPA ligand, 2-pSCNBz-6-Me-DTPA (1), was prepared.
Technologies and protocols for data center and cloud networking (2013)

Data center and cloud architectures continue to evolve to address the needs of large-scale multi-tenant data centers and clouds. These needs are centered around seven dimensions: scalability in computing, storage, and bandwidth, scalability in network services, efficiency in resource utilization, agility in service creation, cost efficiency, service reliability, and security. This article focuses on the first five dimensions as they pertain to networking. Large data centers are targeting support for tens of thousands of servers, exabytes of storage, terabits per second of traffic, and tens of thousands of tenants. In a data center, server and storage resources are interconnected with packet switches and routers that provide for the bandwidth and multi-tenant virtual networking needs. Data centers are interconnected across the wide area network via routing and transport technologies to provide a pool of resources, known as the cloud. High-speed optical interfaces and dense wavelength-division multiplexing optical transport are used to provide for high-capacity transport intra- and inter-datacenter. This article reviews various switching, routing, and optical transport technologies, and their applicability in addressing the networking needs of large-scale multi-tenant data centers.
Chemical and Crystallographic Characterization of the Tip Apex in Scanning Probe Microscopy (2014)

The apex atom of a W scanning probe tip reveals a nonspherical charge distribution as probed by a CO molecule bonded to a Cu(111) surface [Welker et al., Science 336, 444 (2012). Three high-symmetry images were observed and related to three low-index crystallographic directions of the W bcc crystal. Open questions remained, such as the detectability of a contamination of W tips by sample material (here Cu), and the applicability of the method to distinguish other atomic species. In this work, we investigate bulk Cu and Fe tips. In both cases, we can associate our data with the fcc (Cu) and bcc (Fe) crystal structures using a simple electrostatic model that is based on the partial filling of d orbitals.
American ginseng extract reduces scopolamine-induced amnesia in a spatial learning task. (1999)

HT-1001 demonstrates a capacity to protect against scopolamine-induced memory deficits.
Highly Active Antiretroviral Therapy and Progressive Multifocal Leukoencephalopathy: Effects on Cerebrospinal Fluid Markers of JC Virus Replication and Immune Response (2000)

Cerebrospinal fluid (CSF) samples were examined from 7 patients infected with human immunodeficiency virus type 1 (HIV-1) who had progressive multifocal leukoencephalopathy (PML). Samples were obtained both before and after 35-365 days of highly active antiretroviral therapy (HAART). By polymerase chain reaction, JC virus (JCV) DNA was found in 6 of 7 patients at baseline but in only 1 patient after HAART. In contrast, in 25 historical control patients from whom sequential CSF specimens were obtained, no reversion from detectable to undetectable JCV DNA was observed. By use of enzyme-linked immunosorbent assay, intrathecal production of antibody to JCV-VP1 was shown in only 1 of 4 HAART recipients at baseline but in 5 of 5 patients after treatment. The neuroradiological picture improved or had stabilized in all patients after 12 months of HAART, and all were alive after a median of 646 days (range, 505-775 days). Prolonged survival after HAART for PML is associated with JCV clearance from CSF. JCV-specific humoral intrathecal immunity may play a role in this response.
c-Abl tyrosine kinase regulates cardiac growth and development (2009)

The c-Abl protein is a ubiquitously expressed nonreceptor tyrosine kinase involved in the development and function of many mammalian organ systems, including the immune system and bone. Here we show that homozygous Abl mutant embryos and newborns on the C57BL/6J background, but not on other backgrounds, display dramatically enlarged hearts and die perinatally. The heart defects can be largely rescued by cardiomyocyte-specific restoration of the full-length c-Abl protein. The cardiac hyperplasia phenotype is not caused by decreased apoptosis, but rather by abnormally increased cardiomyocyte proliferation during later stages of embryogenesis. Genes involved in cardiac stress and remodeling and cell cycle regulation are also up-regulated in the mutant hearts. These findings reveal an essential role for c-Abl in mammalian heart growth and development.
Requirement of Bmp8b for the Generation of Primordial Germ Cells in the Mouse (2000)

In the mouse embryo, the generation of primordial germ cells (PGCs) from the epiblast requires a bone morphogenetic protein-4 (BMP4) signal from the adjacent extraembryonic ectoderm. In this study, we report that Bmp8b, a member of the Gbb-60A class of the BMP superfamily, is expressed in the extraembryonic ectoderm in pregastrula and gastrula stage mouse embryos and is required for PGC generation. A mutation in Bmp8b on a mixed genetic background results in the absence of PGCs in 43% null mutant embryos and severe reduction in PGC number in the remainder. The heterozygotes are unaffected. On a largely C57BL/6 background, Bmp8b null mutants completely lack PGCs, and Bmp8b heterozygotes have a reduced number of PGCs. In addition, Bmp8b homozygous null embryos on both genetic backgrounds have a short allantois, and this organ is missing in some more severe mutants. Since Bmp4 heterozygote embryos have reduced numbers of PGCs, we used a genetic approach to generate double-mutant embryos to study interactions of Bmp8b and Bmp4. Embryos that are double heterozygotes for the Bmp8b and Bmp4 mutations have similar defects in PGC number as Bmp4 heterozygotes, indicating that the effects of the two BMPs are not additive. These findings suggest that BMP4 and BMP8B function as heterodimers and homodimers in PGC specification in the mouse.
Discovering Browser Extensions via Web Accessible Resources (2017)

Browser extensions provide a powerful platform to enrich browsing experience. At the same time, they raise important security questions. From the point of view of a website, some browser extensions are invasive, removing intended features and adding unintended ones, e.g. extensions that hijack Facebook likes. Conversely, from the point of view of extensions, some websites are invasive, e.g. websites that bypass ad blockers. Motivated by security goals at clash, this paper explores browser extension discovery, through a non-behavioral technique, based on detecting extensions' web accessible resources. We report on an empirical study with free Chrome and Firefox extensions, being able to detect over 50% of the top 1,000 free Chrome extensions, including popular security- and privacy-critical extensions such as AdBlock, LastPass, Avast Online Security, and Ghostery. We also conduct an empirical study of non-behavioral extension detection on the Alexa top 100,000 websites. We present the dual measures of making extension detection easier in the interest of websites and making extension detection more difficult in the interest of extensions. Finally, we discuss a browser architecture that allows a user to take control in arbitrating the conflicting security goals.
Functional comparison of Fc epsilon RI, Fc gamma RII, and Fc gamma RIII in mast cells (1992)

The cellular responses initiated by cross-linking rodent Fc gamma RII-b1, Fc gamma RII-b2, Fc gamma RIII, and Fc epsilon RI in mast cells were compared. Individual murine Fc gamma R isoforms were transfected into rat basophilic leukemia cells and after cross-linking the FcR, changes in the phosphorylation of protein tyrosines, in the level of intracellular Ca2+, in the hydrolysis of phosphoinositides, and in the release of arachidonic acid metabolites and hexosaminidase were monitored. Cross-linking of Fc gamma RIII initiated all of these early and late biochemical functions, and although they were quantitatively somewhat smaller, the responses were qualitatively indistinguishable from those stimulated by the endogenous Fc epsilon RI. However, despite ample expression, neither Fc gamma RII-b1 nor Fc gamma RII-b2 stimulated these functions when cross-linked. The functional differences between Fc gamma RII and Fc gamma RIII were studied further by assessing the responses to cross-linking of the endogenous Fc gamma R (Fc gamma RII-b1, Fc gamma RII-b2, and Fc gamma RIII) on P815 mouse mastocytoma cells that had been transfected with normal or functionally defective Fc epsilon RI. Two types of mutant subunits had previously been observed to impair the activity of Fc epsilon RI: gamma-chains missing the cytoplasmic domain, and beta-chains missing the COOH-terminal cytoplasmic domain. In both types of transfectants the functional inhibition of the endogenous Fc gamma R paralleled that of the transfected Fc epsilon RI. These results are consistent with the gamma subunit being associated with the functions of Fc gamma RIII as well as of Fc epsilon RI. The functional results also complement the recently reported evidence that Fc gamma RIII can interact with Fc epsilon RI beta-subunits (J. Exp. Med. 175:447, 1992).
Phase 1 Study of the Safety and Immunogenicity of a Live, Attenuated Respiratory Syncytial Virus and Parainfluenza Virus Type 3 Vaccine in Seronegative Children (2011)

The safety profile and vaccine take as measured by shedding and/or seroresponse in this RSV/PIV3-seronegative pediatric population support the continued development of this RSV/PIV3 pediatric vaccine candidate.
High-Throughput Verification of Transcriptional Starting Sites by Deep-Race (2009)

We present a high-throughput method for investigating the transcriptional starting sites of genes of interest, which we named Deep-RACE (Deep-rapid amplification of cDNA ends). Taking advantage of the latest sequencing technology, it allows the parallel analysis of multiple genes and is free of time-consuming cloning steps. In comparison to the sequencing of RACE PCR products, our approach is more precise and more cost-effective even for batches as small as 17.
A Writer's Guide to the Internet (1996)

From the Publisher:
The Writer's Guide to the Internet is the perfect tool for writers to find online information. Dawn Groves, author of the popular The Web Page Workbook, shows you how to find helpful resources, publish on the Web, and research topics. You'll also learn how to participate in Internet writers' groups, and you'll find tips on how to market yourself and write for an online audience.
Alkylation of 2-Amino-4-hydroxypyrimidines with Acrylonitrile and with Dimethyl Sulfate: Two Pyrimido[1,2-α]pyrimidinediones (1961)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTAlkylation of 2-Amino-4-hydroxypyrimidines with Acrylonitrile and with Dimethyl Sulfate: Two Pyrimido[1,2-α]pyrimidinedionesROBERT B. ANGIER and WILLIAM V. CURRANCite this: J. Org. Chem. 1961, 26, 6, 1891–1895Publication Date (Print):June 1, 1961Publication History Published online1 May 2002Published inissue 1 June 1961https://pubs.acs.org/doi/10.1021/jo01065a048https://doi.org/10.1021/jo01065a048research-articleACS PublicationsRequest reuse permissionsArticle Views267Altmetric-Citations28LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Prokaryotic glycosylation (2001)

With the advances of molecular biology and with improved analytical techniques a significant change of perception has taken place regarding prokaryotic glycoproteins. Glycosylation of proteins from prokaryotes is no longer considered a specific feature of certain organisms but has been demonstrated for many archaea and bacteria. Besides the occurrence of glycosylated enzymes, antigens and other cell envelope components, surface layer (S-layer) glycoproteins represent the best-studied examples of glycosylated prokaryotic proteins. They are widely distributed among archaeal wild-type strains, but among bacteria they have been mainly observed with Gram-positive organisms. There is, in general, an enormous increase of reports on the presence of glycosylated proteins among prokaryotes. For their isolation and characterization a great number of methods are available, aiming at the identification of the covalent linkage between the carbohydrate and the polypeptide portion. So far, several differences in structure and biosynthesis have been observed in comparison to eukaryotic glycoproteins. In this review we introduce a protocol which has been successfully applied to the investigation of the complex structures, linkage units, and polypeptide consensus sequences of glycosylated bacterial S-layer proteins.
Everything as a Service: Powering the New Information Economy (2011)

The mobility/cloud ecosystem aims to deliver infrastructure, platforms, and software as a service, enabling more people to benefit from ubiquitous information access. The culmination of 10 years' research converges on-demand applications with the infrastructure—servers, storage, networks, and client devices—to support cloud computing.
TCR Vaccines Against T Cell Lymphoma: QS-21 and IL-12 Adjuvants Induce a Protective CD8+ T Cell Response (1999)

Tumor-specific TCR can serve as an effective target for active immunotherapy of T cell malignancies. Using the murine T cell tumor model C6VL, vaccination with C6VL TCR protected mice from a subsequent lethal dose of tumor cells. This study characterizes the immune mechanisms involved in the tumor protection, and the influence of immunologic adjuvants in inducing a protective immune response. Immune responses induced by TCR vaccines formulated with various adjuvants: QS-21, IL-12, SAF-1, CD40L, and GM-CSF were compared. QS-21, IL-12, and SAF-1 biased the humoral immune response toward Th1-type, reflected by the induction of IgG2a and IgG2b anti-C6VL TCR Abs. CD40L and GM-CSF exclusively produced IgG1 Abs, reflecting a Th2-type immune response. In our tumor model system, only vaccines containing adjuvants that induced a Th1-type immune response favored tumor protection. Furthermore, we demonstrated that CD8+ T cells were necessary and sufficient for tumor protection using anti-CD8 mAb depletion and adoptive cell transfer experiments. Transfer of hyperimmune serum containing anti-C6VL TCR Abs into na ive mice had modest anti-tumor effects and was not sufficient to prevent tumor growth. TCR-vaccinated B cell-deficient mice were not protected against C6VL tumor, and tumor protection was not completely restored after hyperimmune serum transfer. Thus, B cells may serve as important APCs in inducing a protective immune response. Based on these results future TCR vaccines should be designed to maintain native TCR conformation, as well as induce a strong Th1-type immune response.
Accommodative responses to stereoscopic three-dimensional display (1997)

Experimental examination of the accommodative responses to a stereoscopic 3-D display found that accommodation was elicited by convergence and moved to the stereoscopic distance of the 3-D image. Immediately after the depth of the target was changed, the magnitude of response was smaller than that for a real target, but when the subjects fixated on the 3-D images, the responses were in almost the same position as the position of 3-D images. Measurement of accommodation response time after the subjects viewed 3-D images showed an afteraffect on the far-to-near accommodation response. The results are discussed in terms of the mismatch of accommodation and convergence in stereoscopic 3-D images and of the interaction between accommodation and convergence in human eyes.
TGF-β1-activated kinase-1 regulates inflammation and fibrosis in the obstructed kidney (2011)

Activation of c-Jun amino kinase (JNK), p38 mitogen-activated protein kinase (MAPK), and the transcription factor nuclear factor-κB (NF-κB) drives renal inflammation and fibrosis. However, the upstream MAP kinase kinase kinase (MAP3K) enzyme(s) that activate these pathways in kidney disease are unknown. We determined the role of one candidate MAP3K enzyme, transforming growth factor-β1-activated kinase-1 (TAK1/ MAP3K7), in activation of JNK, p38, and NF-κB in the obstructed kidney using conditional gene deletion in adult mice, and assessed the potential protective effect of TAK1 deletion on renal pathology. TAK1 deletion in cultured tubular epithelial cells substantially inhibited IL-1 and TNF-α-induced JNK, p38, and NF-κB signaling and the proinflammatory response. Map3k7(f/f)Cre-ER(TM) mice (in which tamoxifen induces global TAK1 deletion) and control Map3k7(f/f) mice were given tamoxifen at the time of unilateral ureteric obstruction (UUO) and then killed 2, 4, or 5 days later. Tamoxifen-treated control Map3k7(f/f) mice showed the expected activation of JNK, p38, and NF-κB signaling on days 2, 4, and 5, with macrophage infiltration and upregulation of mRNA levels of proinflammatory molecules (IL-1α, TNF-α, NOS2, and CCL2). Control Map3k7(f/f) mice also showed interstitial myofibroblast accumulation and collagen deposition in the obstructed kidney. Tamoxifen treatment of Map3k7(f/f)Cre-ER(TM) mice caused a 60% reduction in renal TAK1 expression on day 4 and >80% on day 5 UUO. Coincident with TAK1 deletion, activation of JNK, p38, and NF-κB signaling was markedly suppressed on days 4 to 5 UUO, which halted renal macrophage accumulation and expression of proinflammatory molecules. TAK1 deletion also halted the development of renal fibrosis in terms of myofibroblast accumulation, collagen deposition, and expression of profibrotic molecules. In conclusion, these studies establish TAK1 as a major upstream activator of JNK, p38, and NF-κB signaling in the obstructed kidney, and they define a pathologic role for TAK1 in renal inflammation and fibrosis.
Palladium Fluoride Complexes: One More Step toward Metal-Mediated C−F Bond Formation Frontispiece shows woodcuts from: John French, The Art of Distillation, London, 1651. Courtesy of Adam McLean (http://www.levity.com/alchemy/). (2002)

The first molecular complexes of palladium containing a Pd-F bond, both fluorides and bifluorides, were synthesized and fully characterized in the solid state and in solution. Reactivity studies of the Pd fluoride complexes revealed their unexpected stability and unusual chemical properties, different from the hydroxo, chloro, bromo, and iodo analogues. A novel efficient method to generate "naked fluoride" was developed using [(Ph(3)P)(2)Pd(F)Ph]. The naked fluoride from the Pd source fluorinated dichloromethane, deprotonated chloroform, and catalyzed di- and trimerization of hexafluoropropene under uncommonly mild conditions.
Syntheses, analgetic activity and physical dependence capacity of 5-phenyl-6,7-benzomorphan derivatives (1979)

The synthesis, analgetic activity, and physical dependence capacity of a large number of 5-phenyl-6,7-benzomorphan derivatives are described. Observations made during the Stevens' rearrangement of 1-benzyl-1-methyl-delta 3-piperidinium salt derivatives (V) under various conditions are discussed. The absolute configuration of the 9-demethyl series and the 2'-deoxy series is established by comparison of their ORD and CD spectra with those of 49, whose absolute configuration was previously established by X-ray crystallography. A convenient synthesis of 3H-labeled phenols using 3H3PO4 is described, as well as the preparation of 14C-labeled compounds by conventional methods.
Three-Dimensional Structure of Poliovirus at 2.9 Å Resolution (1985)

The three-dimensional structure of poliovirus has been determined at 2.9 A resolution by x-ray crystallographic methods. Each of the three major capsid proteins (VP1, VP2, and VP3) contains a "core" consisting of an eight-stranded antiparallel beta barrel with two flanking helices. The arrangement of beta strands and helices is structurally similar and topologically identical to the folding pattern of the capsid proteins of several icosahedral plant viruses. In each of the major capsid proteins, the "connecting loops" and NH2- and COOH-terminal extensions are structurally dissimilar. The packing of the subunit "cores" to form the virion shell is reminiscent of the packing in the T = 3 plant viruses, but is significantly different in detail. Differences in the orientations of the subunits cause dissimilar contacts at protein-protein interfaces, and are also responsible for two major surface features of the poliovirion: prominent peaks at the fivefold and threefold axes of the particle. The positions and interactions of the NH2- and COOH-terminal strands of the capsid proteins have important implications for virion assembly. Several of the "connecting loops" and COOH-terminal strands form prominent radial projections which are the antigenic sites of the virion.