gebhart/patrepeval huggingface dataset:
Proceedings: Interrelationship of carcinoembryonic antigen and colon carcinoma antigen-3. (1974)

Summary For the preparation of carcinoembryonic antigen from 0.5 to 5.0 kg of liver metastasis of colon carcinoma, a method is described which includes extraction with perchloric acid, column chromatography with the use of mixed-bed ion-exchange cellulose, and gel filtration. Carcinoembryonic antigen isolated from different individual tumors was interchangeable in the radioimmunoassay and demonstrated homology of the protein moiety, while differences in the carbohydrate portion are probably due to damage caused by autolysis. An additional step was required in the preparation of colon carcinoma antigen-III; polyacrylamide electrophoresis appeared to yield purified antigen. A comparison of the immunological and chemical properties of carcinoembryonic antigen versus those of colon carcinoma antigen-III showed them to be closely related glycoproteins which do not cross-react in radioimmunoassay. A radioimmunoassay was developed to determine colon carcinoma antigen-III concentration, and the normal titer in plasma ranges from 0.7 to 1.5 µg/ml.
Presentation of two epitopes of the preS2 region of hepatitis B virus on live recombinant bacteria. (1987)

Having developed a genetic procedure to expose a foreign epitope at the surface of Escherichia coli by using the outer membrane LamB protein as a carrier, we apply this procedure to express two distinct portions of the preS2 region of hepatitis B virus: region A, residues 132-145, and region B, residues 153-171. The resulting hybrid proteins (LamB-preS2 A and LamB-preS2 B) were normally expressed, stable, and still kept most biologic functions of LamB. The corresponding bacterial strains were used directly as immunogens in rabbits and mice. Both viral sequences were found to be immunogenic in the two animal species. With LamB-preS2 A, antibodies induced were able to react with the viral particles and the immobilized peptide. With LamB-preS2 B, the antibodies raised were not able to recognize the immobilized peptide. However, the results suggest that the B epitope, inserted in LamB, was at least as efficient as the corresponding synthetic peptide in raising antiviral antibodies. Thus, epitope presentation with LamB may present advantages for immunization. We also have shown that peptide A is an essential part of the polymerized human serum albumin receptor. These results, which validate further the LamB vector system for epitope presentation, provide information on the two hepatitis B regions expressed.
Magnetic techniques for the isolation and purification of proteins and peptides (2004)

Isolation and separation of specific molecules is used in almost all areas of biosciences and biotechnology. Diverse procedures can be used to achieve this goal. Recently, increased attention has been paid to the development and application of magnetic separation techniques, which employ small magnetic particles. The purpose of this review paper is to summarize various methodologies, strategies and materials which can be used for the isolation and purification of target proteins and peptides with the help of magnetic field. An extensive list of realised purification procedures documents the efficiency of magnetic separation techniques.
Heparin by Alternative Routes of Administration (1990)

In a study investigating the bioavailability of heparin administered by different routes, we also compared its bioavailability in the dog after oral administration of two enteric-coated formulations, one containing a heparin preparation (ITF-300) and the other sodium heparin. After administration of the formulation containing sodium heparin, there was no heparin in plasma, but when the formulation containing ITF-300 was given, plasma heparin levels were detectable.
Amygdaloid projections to the frontal cortex and the striatum in the rat (1990)

Projections from the basolateral nucleus of the amygdala (BLA) to the frontal cortex and the striatum were studied by using Phaseolus vulgaris-leucoagglutinin (PHA-L) anterograde tracing technique in the rat. PHA-L injections into the rostral part of the BLA resulted in a dense labeling of fibers with boutons in the dorsal bank of the rhinal fissure and in the lateral and the medial agranular cortex. PHA-L injections into the caudal part of the BLA produced a dense labeling of fibers in the medial surface of the frontal cortex. In most of the cortical regions, labeled fibers were predominantly distributed in two bands: one in the deep part of layers I and II and the other, heavier band, in layers V and VI. PHA-L injections into the rostral BLA resulted in a dense labeling of fibers with boutons in the olfactory tubercle, the rostral and caudolateral portion of the nucleus accumbens, and a large region of the caudate-putamen. The labeled area of the caudate-putamen included the rostroventral area, the central area, and the area caudal to the anterior commissure and dorsal and lateral to the globus pallidus. PHA-L injections into the caudal BLA produced fiber labeling in the most rostromedial area of the caudate-putamen facing the lateral ventricle, the medial portion of the nucleus accumbens, and the lateral septum. In the rostroventral striatum, PHA-L-labeled fibers selectively innervated the matrix compartment that contains abundant somatostatin-immunoreactive fibers. Compartmental segregation was less clear in the caudodorsolateral caudate-putamen and in the nucleus accumbens. Electron microscopy revealed that PHA-L-labeled boutons in the striatum contained abundant, small, round vesicles. These boutons formed asymmetrical synapses with dendritic spines of striatal neurons.
The Effect of Liraglutide, a Long-Acting Glucagon-Like Peptide 1 Derivative, on Glycemic Control, Body Composition, and 24-h Energy Expenditure in Patients With Type 2 Diabetes (2004)

Eight weeks of 0.6-mg liraglutide treatment significantly improved glycemic control without increasing weight in subjects with type 2 diabetes compared with those on placebo. No influence on 24-h energy expenditure was detected.
Acoustic response of compliable microvessels containing ultrasound contrast agents (2006)

The existing models of the dynamics of ultrasound contrast agents (UCAs) have largely been focused on an UCA surrounded by an infinite liquid. Preliminary investigations of a microbubble's oscillation in a rigid tube have been performed using linear perturbation, under the assumption that the tube diameter is significantly larger than the UCA diameter. In the potential application of drug and gene delivery, it may be desirable to fragment the agent shell within small blood vessels and in some cases to rupture the vessel wall, releasing drugs and genes at the site. The effect of a compliant small blood vessel on the UCA's oscillation and the microvessel's acoustic response are unknown. The aim of this work is to propose a lumped-parameter model to study the interaction of a microbubble oscillation and compliable microvessels. Numerical results demonstrate that in the presence of UCAs, the transmural pressure through the blood vessel substantially increases and thus the vascular permeability is predicted to be enhanced. For a microbubble within an 8 to 40 microm vessel with a peak negative pressure of 0.1 MPa and a centre frequency of 1 MHz, small changes in the microbubble oscillation frequency and maximum diameter are observed. When the ultrasound pressure increases, strong nonlinear oscillation occurs, with an increased circumferential stress on the vessel. For a compliable vessel with a diameter equal to or greater than 8 microm, 0.2 MPa PNP at 1 MHz is predicted to be sufficient for microbubble fragmentation regardless of the vessel diameter; however, for a rigid vessel 0.5 MPa PNP at 1 MHz may not be sufficient to fragment the bubbles. For a centre frequency of 1 MHz, a peak negative pressure of 0.5 MPa is predicted to be sufficient to exceed the stress threshold for vascular rupture in a small (diameter less than 15 microm) compliant vessel. As the vessel or surrounding tissue becomes more rigid, the UCA oscillation and vessel dilation decrease; however the circumferential stress is predicted to increase. Decreasing the vessel size or the centre frequency increases the circumferential stress. For the two frequencies considered in this work, the circumferential stress does not scale as the inverse of the square root of the acoustic frequency va as in the mechanical index, but rather has a stronger frequency dependence, 1/va.
Effect of Loading Rate and Hydration on the Mechanical Properties of the Disc (2000)

Intervertebral disc compressive mechanical properties are significantly dependent on loading rate and hydration.
[Research progress of matrix metalloproteinase 12 in non-small cell lung cancer]. (2014)

Lung cancer is one of the most common malignant tumors in the world wide. Non-small cell lung cancer (NSCLC) accounts for approximately 80% of lung cancers, its pathogenesis have not been elucidated. Recently, researches have shown that dysregulation and excessive activity of the matrix metalloproteinases (MMPs) has been associated with many pathologies. Some results suggest that the matrix metalloproteinases 12 (MMP-12) participates in the invasion and metastasis of NSCLC. The expression of MMP-12 in non-small cell lung cancer is significantly higher than in adjacent tissues. And studies have shown that the MMP-12 has important prognostic significance in NSCLC. Therefore this article will briefly summarize the research progresses of MMP-12 in NSCLC.
Dysfunctional oligodendrocyte progenitor cell (OPC) populations may inhibit repopulation of OPC depleted tissue (2003)

We have attempted to extend a previously described rat model of focal oligodendrocyte progenitor cell (OPC) depletion, using 40 Gy X-irradiation (Chari and Blakemore [2002] Glia 37:307-313), to the adult mouse spinal cord, to examine the ability of OPCs present in adjacent normal areas to colonise areas of progenitor depletion. In contrast to rat, OPCs in the mouse spinal cord appeared to be a comparatively radiation-resistant population, as 30-35% of OPCs survived in X-irradiated tissue (whereas <1% of OPCs survive in X-irradiated rat spinal cord). The numbers of surviving OPCs remained constant with time indicating that this population was incapable of regenerating itself in response to OPC loss. Additionally, these OPCs did not contribute to remyelination of axons when demyelinating lesions were placed in X-irradiated tissue, suggesting that the surviving cells are functionally impaired. Importantly, the length of the OPC-depleted area did not diminish with time, as would be expected if progressive repopulation of OPC-depleted areas by OPCs from normal areas was occurring. Our findings therefore raise the possibility that the presence of a residual dysfunctional OPC population may inhibit colonisation of such areas by normal OPCs.
Characterization of the cellulolytic and hydrogen-producing activities of six mesophilic Clostridium species (2007)

The fermentation of cellulosic materials presents a means of H(2) production from renewable resources. This standardized comparison provides a quantitative baseline for improving H(2) production from cellulose through medium and process optimization and metabolic engineering.
Explicit Path Control in Commodity Data Centers: Design and Applications (2015)

Many data center network DCN applications require explicit routing path control over the underlying topologies. In this paper, we present XPath, a simple, practical and readily-deployable way to implement explicit path control, using existing commodity switches. At its core, XPath explicitly identifies an end-to-end path with a path ID and leverages a two-step compression algorithm to pre-install all the desired paths into IP TCAM tables of commodity switches. Our evaluation and implementation show that XPath scales to large DCNs and is readily-deployable. Furthermore, on our testbed, we integrate XPath into four applications to showcase its utility.
Subunit Dimers of α-Hemolysin Expand the Engineering Toolbox for Protein Nanopores (2011)

Staphylococcal α-hemolysin (αHL) forms a heptameric pore that features a 14-stranded transmembrane β-barrel. We attempted to force the αHL pore to adopt novel stoichiometries by oligomerizing subunit dimers generated by in vitro transcription and translation of a tandem gene. However, in vitro transcription and translation also produced truncated proteins, monomers, that were preferentially incorporated into oligomers. These oligomers were shown to be functional heptamers by single-channel recording and had a similar mobility to wild-type heptamers in SDS-polyacrylamide gels. Purified full-length subunit dimers were then prepared by using His-tagged protein. Again, single-channel recording showed that oligomers made from these dimers are functional heptamers, implying that one or more subunits are excluded from the central pore. Therefore, the αHL pore resists all structures except those that possess seven subunits immediately surrounding the central axis. Although we were not able to change the stoichiometry of the central pore of αHL by the concatenation of subunits, we extended our findings to prepare pores containing one subunit dimer and five monomers and purified them by SDS-PAGE. Two half-chelating ligands were then installed at adjacent sites, one on each subunit of the dimer. Single-channel recording showed that pores formed from this construct formed complexes with divalent metal ions in a similar fashion to pores containing two half-chelating ligands on the same subunit, confirming that the oligomers had assembled with seven subunits around the central lumen. The ability to incorporate subunit dimers into αHL pores increases the range of structures that can be obtained from engineered protein nanopores.
Factors Affecting the Efficiency of a Self-Emulsifying Oral Delivery System (1997)

Dosage forms containing a self-emulsifying system have shown significant promise in improving the in vitro dissolution rate and oral absorption of lipophilic drugs. In such a system, a surfactant, or a surfactant plus medium chain monoglyceride (co-emulsifier), is added to a lipophilic vehicle (oil) containing dissolved drug. In the present study, surfactants with different hydrophile-lipophile balance (HLB), fatty acid glycerides (co-emulsifiers) with varying fatty acid (C8-C18) chain length, and lipophilic vehicles (oils) containing different fatty acid (C8-C18) compositions were evaluated for their effectiveness in producing self-emulsifying systems. nis investigation showed that the HLB of the surfactant, as well as the fatty acid chain length of the monoglyceride have a significant effect on the performance of the self-emulsifying system; a surfactant with an HLB in the range of 10–15 and a monoglyceride of medium chain fatty acid (C8-C10) were most effective. Also, there are certain critical concentrations of surfactant and monoglyceride necessary for preparing an optimum self-emulsifying oral drug delivery system.
Mathematical Model of a Photocatalytic Fiber-Optic Cable Reactor for Heterogeneous Photocatalysis (1998)

A basic mathematical model to describe the degradation of a single compound in a fiber-optic bundled array photocatalytic batch reactor (OFR) using a Langmuir−Hinshelwood kinetic expression is developed. An empirical global quantum efficiency, φglobal, that incorporates reaction parameters such as the absorbed light intensity, intrinsic rate constants, concentration of adsorbed reactants, and reaction intermediates is used as a fitting parameter. An empirical term to describe the radiation field within the coated fiber is derived experimentally and normalized by the photocatalyst particle concentration within the fiber optic coating to account for the inverse relationship observed between absorbed light intensity and reaction quantum efficiency. Results of the mathematical model are compared to experimental data generated in an OFR for the photocatalytic oxidation of 4-chlorophenol (4CP), pentachlorophenol (PCP), and dichloroacetate (DCA). The global quantum efficiency, φglobal, was found to be independent of absorbed light intensity. Calculated kinetic profiles are in excellent agreement with experimental observation.
Strategies to improve the signal and noise performance of active matrix, flat‐panel imagers for diagnostic x‐ray applications (2000)

A theoretical investigation of factors limiting the detective quantum efficiency (DQE) of active matrix flat-panel imagers (AMFPIs), and of methods to overcome these limitations, is reported. At the higher exposure levels associated with radiography, the present generation of AMFPIs is capable of exhibiting DQE performance equivalent, or superior, to that of existing film-screen and computed radiography systems. However, at exposure levels commonly encountered in fluoroscopy, AMFPIs exhibit significantly reduced DQE and this problem is accentuated at higher spatial frequencies. The problem applies both to AMFPIs that rely on indirect detection as well as direct detection of the incident radiation. This reduced performance derives from the relatively large magnitude of the square of the total additive noise compared to the system gain for existing AMFPIs. In order to circumvent these restrictions, a variety of strategies to decrease additive noise and enhance system gain are proposed. Additive noise could be reduced through improved preamplifier, pixel and array design, including the incorporation of compensation lines to sample external line noise. System gain could be enhanced through the use of continuous photodiodes, pixel amplifiers, or higher gain x-ray converters such as lead iodide. The feasibility of these and other strategies is discussed and potential improvements to DQE performance are quantified through a theoretical investigation of a variety of hypothetical 200 microm pitch designs. At low exposures, such improvements could greatly increase the magnitude of the low spatial frequency component of the DQE, rendering it practically independent of exposure while simultaneously reducing the falloff in DQE at higher spatial frequencies. Furthermore, such noise reduction and gain enhancement could lead to the development of AMFPIs with high DQE performance which are capable of providing both high resolution radiographic images, at approximately 100 microm pixel resolution, as well as variable resolution fluoroscopic images at 30 fps.
Enhanced Permeability and Retention (EPR) Effect for Anticancer Nanomedicine Drug Targeting (2010)

Effective cancer therapy remains one of the most challenging tasks to the scientific community, with little advancement on overall cancer survival landscape during the last two decades. A major limitation inherent to most conventional anticancer chemotherapeutic agents is their lack of tumor selectivity. One way to achieve selective drug targeting to solid tumors is to exploit abnormalities of tumor vasculature, namely hypervascularization, aberrant vascular architecture, extensive production of vascular permeability factors stimulating extravasation within tumor tissues, and lack of lymphatic drainage. Due to their large size, nano-sized macromolecular anticancer drugs administered intravenously (i.v.) escape renal clearance. Being unable to penetrate through tight endothelial junctions of normal blood vessels, their concentration builds up in the plasma rendering them long plasma half-life. More importantly, they can selectively extravasate in tumor tissues due to its abnormal vascular nature. Overtime the tumor concentration will build up reaching several folds higher than that of the plasma due to lack of efficient lymphatic drainage in solid tumor, an ideal application for EPR-based selective anticancer nanotherapy. Indeed, this selective high local concentration of nano-sized anticancer drugs in tumor tissues has proven superior in therapeutic effect with minimal side effects in both preclinical and clinical settings.
A method for producing recombinant baculovirus expression vectors at high frequency. (1993)

A system has been developed that can generate recombinant baculovirus expression vectors at frequencies approaching 100%. This system provides a selection for recombinant viruses by using the essential gene downstream of the Autographa californica nuclear polyhedrosis virus (AcMNPV) polyhedrin expression locus. Two AcMNPV derivatives were constructed in which the expression locus and part of the downstream gene are flanked by restriction sites. The parental viruses are viable; however, restriction of the viral DNAs removes an essential piece of the viral genome. Transfer vectors carry a copy of the missing sequences downstream from the site into which foreign genes are inserted for expression; hence, recombination between a transfer vector and the restricted viral DNA can restore the integrity of the essential gene. Such recombination events also transfer any foreign gene present in the expression locus of the transfer vector to the viral genome. Recombinant viruses therefore have a selective advantage over nonrecombinant viral DNAs. Consequently, a high proportion of the viruses obtained by co-transfecting transfer vector DNA and restricted viral DNA of one of these new viruses expresses the target gene from the transfer vector. This system greatly reduces the time needed to make recombinant baculovirus expression vectors.
Mobile DNA in Old World Monkeys: A Glimpse Through the Rhesus Macaque Genome (2007)

The completion of the draft sequence of the rhesus macaque genome allowed us to study the genomic composition and evolution of transposable elements in this representative of the Old World monkey lineage, a group of diverse primates closely related to humans. The L1 family of long interspersed elements appears to have evolved as a single lineage, and Alu elements have evolved into four currently active lineages. We also found evidence of elevated horizontal transmissions of retroviruses and the absence of DNA transposon activity in the Old World monkey lineage. In addition, approximately 100 precursors of composite SVA (short interspersed element, variable number of tandem repeat, and Alu) elements were identified, with the majority being shared by the common ancestor of humans and rhesus macaques. Mobile elements compose roughly 50% of primate genomes, and our findings illustrate their diversity and strong influence on genome evolution between closely related species.
Ab initioinvestigation of hybrid organic-inorganic perovskites based on tin halides (2008)

The structural and electronic properties of both inorganic and hybrid organic-inorganic perovskites based on tin halides are investigated from the first principles. In particular, we contrast the inorganic ${\text{CsSnCl}}_{3}$ and ${\text{CsSnI}}_{3}$ to their hybrid counterparts $({\text{CH}}_{3}{\text{NH}}_{3}){\text{SnCl}}_{3}$, $({\text{CH}}_{3}{\text{NH}}_{3}){\text{SnI}}_{3}$, and $({\text{NH}}_{2}\text{CH}={\text{NH}}_{2}){\text{SnI}}_{3}$, which were obtained by substituting the inorganic Cs cation with the methylammonium ${\text{CH}}_{3}{\text{NH}}_{3}$ and the formamidinium ${\text{NH}}_{2}\text{CH}={\text{NH}}_{2}$ cations. The comparison between the hybrid perovskites and the inorganic counterparts sheds light on the effects of the filling molecule on the structural and electronic properties of the compound. We show that the stability against the distortion of the perovskitic cage strongly depends on the embedded cation. The electronic properties (in particular, the band gap) can be tuned by a suitable choice of the organic molecule, and, in particular, of its size.