gebhart/patrepeval huggingface dataset:
Dynamics of glutathione levels in liver and indicatory enzymes in serum in acetaminophen intoxication in mice. (1989)

Acetaminophen (AA) was administered i.p. to Swiss mice as a single dose 100, 200, 300, 400 and 600 mg/kg. At different time periods after administration, the mice were sacrificed. Serum glutamate-pyruvate transaminase (SGPT) and sorbitol dehydrogenase (SDH) as well as glutathione (GSH) levels in the liver were determined. It was found that the effective dose ranged within 200-600 mg/kg. Changes in GSH level occurred shortly after acetaminophen administration, whereas changes in the activity of indicatory enzymes were slightly delayed compared to this process. Conditions allowing for parallel observations of all three indices under investigation occurred 4 hrs after acetaminophen administration. With regard to glutathione, directly measured decrease, as compared to control levels, may be used as the yardstick of the changes. Changes in the activity of indicatory enzymes may be better expressed in the dose-response arrangement. For all the indices determined 4 hrs after acetaminophen administration, ED50 is in the range 200-300 mg/kg.
Potent Oncolytic activity of human enteroviruses against human prostate cancer (2008)

Enteroviruses CVA21, CVA21-DAFv, and EV1 are potentially potent oncolytic agents against human prostate cancer.
Role of FGF/FGFR signaling in skeletal development and homeostasis： learning from mouse models (2014)

Fibroblast growth factor(FGF)/fibroblast growth factor receptor(FGFR) signaling plays essential roles in bone development and diseases. Missense mutations in FGFs and FGFRs in humans can cause various congenital bone diseases, including chondrodysplasia syndromes, craniosynostosis syndromes and syndromes with dysregulated phosphate metabolism. FGF/FGFR signaling is also an important pathway involved in the maintenance of adult bone homeostasis. Multiple kinds of mouse models, mimicking human skeleton diseases caused by missense mutations in FGFs and FGFRs, have been established by knock-in/out and transgenic technologies. These genetically modified mice provide good models for studying the role of FGF/FGFR signaling in skeleton development and homeostasis. In this review, we summarize the mouse models of FGF signaling-related skeleton diseases and recent progresses regarding the molecular mechanisms, underlying the role of FGFs/FGFRs in the regulation of bone development and homeostasis. This review also provides a perspective view on future works to explore the roles of FGF signaling in skeletal development and homeostasis.
Simple epithelial nature of some simian virus-40-transformed human epidermal keratinocytes. (1984)

Previous studies have indicated that some Simian-virus-40-transformed human epidermal keratinocytes (SV40-HE) undergo significant changes in their growth and differentiated properties. To better understand the significance of these changes, we have characterized the keratins of SV40-HE cells by one- and two-dimensional immunoblot analysis using the subfamily-specific AE1 and AE3 monoclonal antikeratin antibodies. The results indicate that our SV40-HE cells have lost the Mr 58,000 (No. 5), Mr 56,000 (No. 6), Mr 50,000 (No. 14/15), Mr 48,000 (No. 16), and Mr 46,000 (No. 17) keratins that are expressed by cultured normal human keratinocytes. Instead, these cells express mainly Mr 52,000 (No. 8), Mr 45,000 (No. 18), and Mr 40,000 (No. 19) keratins, a set highly characteristic of simple epithelial cells. Furthermore, our SV40-HE cells have ceased to express involucrin, another marker for keratinocytes, and have a greatly diminished ability to undergo in vitro stratification. These results suggest that epidermal cells can sometimes lose their keratinocyte features as a consequence of viral transformation. This finding may have important implications regarding the mechanisms of epithelial differentiation and tumorigenesis and in the use of keratinocyte markers for tumor diagnosis.
<title>DNA sequencing by multiple capillaries that form a waveguide</title> (1997)

A 12-capillary prototype electrophoresis system for DNA sequencing has been constructed. Laser illumination is introduced into an optical waveguide that is formed by an array of individual capillaries that serve both as the optical elements of the periodic array and as the channels containing sieving media for electrophoresis. A theoretical framework and experimental data will be presented to illustrate the viability of this approach.
A digital on-demand video service supporting content-based queries (1993)

Video-on-demand represents a key demonstrative application for enabling multimedia technology in communication, database, and interface research. This application requires solving a number of diverse technical problems including the data synchronization problem for time-dependent data delivery.
Interleukin-1 promoter region polymorphism role in rheumatoid arthritis: a meta-analysis of IL-1B-511A/G variant reveals association with rheumatoid arthritis (2008)

There may be a protective effect in RA from the IL-1B (-1464 C/G) G variant. No direct association between the polymorphisms studied and clinical severity characteristics were observed. Further meta-analysis revealed IL-1B (-511 A/G) to be associated with increased susceptibility to RA.
Activation of dynamin GTPase is a result of positive cooperativity. (1994)

Dynamin is a GTP-binding protein thought to be involved in the early stages of endocytosis. Presently, it is not known how dynamin GTP binding and hydrolysis are related to its role in this process. We previously characterized the ability of acidic phospholipid vesicles and microtubules to strongly stimulate the GTPase activity of purified brain dynamin. In a further analysis of dynamin enzymatic properties, we have found that the increase of dynamin GTP hydrolysis in the presence of activating agent depends on enzyme concentration. At low enzyme concentration, little or no activation is observed. Plots of dynamin GTPase activity with increasing enzyme concentration in the presence of either activating agent are strongly sigmoidal, indicating that positive cooperativity is responsible for the increased activity observed. A Hill coefficient of 2.3 was determined, implying that at least two dynamin molecules associate for maximal GTPase activity. No cooperative effects in GTP binding were observed. Linear transformation of reaction velocity versus enzyme concentration data indicate an apparent Km for dynamin-dynamin interactions of 37 nM, which is significantly lower than the physiological concentration of dynamin in brain. These results suggest that cooperative interactions between dynamin molecules are responsible for the apparent activation of GTPase observed and are likely involved in dynamin function in vivo.
Two divergent catalase genes are differentially regulated during Aspergillus nidulans development and oxidative stress (1997)

Catalases are ubiquitous hydrogen peroxide-detoxifying enzymes that are central to the cellular antioxidant response. Of two catalase activities detected in the fungus Aspergillus nidulans, the catA gene encodes the spore-specific catalase A (CatA). Here we characterize a second catalase gene, identified after probing a genomic library with catA, and demonstrate that it encodes catalase B. This gene, designated catB, predicts a 721-amino-acid polypeptide (CatB) showing 78% identity to an Aspergillus fumigatus catalase and 61% identity to Aspergillus niger CatR. Notably, similar levels of identity are found when comparing CatB to Escherichia coli catalase HPII (43%), A. nidulans CatA (40%), and the predicted peptide of a presumed catA homolog from A. fumigatus (38%). In contrast, the last two peptides share a 79% identity. The catalase B activity was barely detectable in asexual spores (conidia), disappeared after germination, and started to accumulate 10 h after spore inoculation, throughout growth and conidiation. The catB mRNA was absent from conidia, and its accumulation correlated with catalase activity, suggesting that catB expression is regulated at the transcription level. In contrast, the high CatA activity found in spores was lost gradually during germination and growth. In addition to its developmental regulation, CatB was induced by H2O2, heat shock, paraquat, or uric acid catabolism but not by osmotic stress. This pattern of regulation and the protective role against H2O2 offered by CatA and CatB, at different stages of the A. nidulans life cycle, suggest that catalase gene redundancy performs the function of satisfying catalase demand at the two different stages of metabolic and genetic regulation represented by growing hyphae versus spores. Alternative H2O2 detoxification pathways in A. nidulans were indicated by the fact that catA/catB double mutants were able to grow in substrates whose catabolism generates H2O2.
Effectiveness of Clopidogrel and Aspirin Versus Ticlopidine and Aspirin in Preventing Stent Thrombosis After Coronary Stent Implantation (1999)

These data suggest that clopidogrel may be an effective pharmacological regimen after coronary stent implantation. Furthermore, the simpler dosing regimen, the absence of neutropenia, and the lower frequency of other side effects make it a safe alternative to ticlopidine.
ABCG1 Redistributes Cell Cholesterol to Domains Removable by High Density Lipoprotein but Not by Lipid-depleted Apolipoproteins (2005)

ATP binding cassette transporter G1 (ABCG1) mediates the transport of cholesterol from cells to high density lipoprotein (HDL) but not to lipid-depleted apolipoprotein A-I. Here we show that human ABCG1 overexpressed in baby hamster kidney cells in the absence of lipoproteins traffics to the plasma membrane and redistributes membrane cholesterol to cell-surface domains accessible to treatment with the enzyme cholesterol oxidase. Cholesterol removed by HDL was largely derived from these domains in ABCG1 transfectants but not in cells lacking ABCG1. Overexpression of ABCG1 also increased cholesterol esterification, which was decreased by the addition of HDL, suggesting that a proportion of the cell-surface cholesterol not removed by HDL is transported to the intracellular esterifying enzyme acyl-CoA:cholesterol acyltransferase. A 638-amino acid ABCG1, which lacked the 40 N-terminal amino acids of the predicted full-length protein, was fully functional and of a similar size to ABCG1 expressed by cholesterol-loaded human monocyte-derived macrophages. Mutating an essential glycine residue in the Walker A motif abolished ABCG1-dependent cholesterol efflux and esterification and prevented localization of ABCG1 to the cell surface, indicating that the ATP binding domain in ABCG1 is essential for both lipid transport activity and protein trafficking. These studies show that ABCG1 redistributes cholesterol to cell-surface domains where it becomes accessible for removal by HDL, consistent with a direct role of ABCG1 in cellular cholesterol transport.
Relaxation Times in Single Event Electrospraying Controlled by Nozzle Front Surface Modification (2009)

Single event electrospraying (SEE) is a method for on-demand deposition of femtoliter to picoliter volumes of fluids. To determine the influence of the size of the meniscus on the characteristics of the single event electrospraying process, glass capillaries were used with and without an antiwetting coating comprising a self-assembled 1H,1H,2H,2H-perfluorodecyltrichlorosilane-based monolayer to control the meniscus size. A large difference was found in driving single event electrospraying from a small meniscus compared to what is needed to generate a single event electrospraying from a large meniscus. Furthermore, after studying the different time constants related to the electrical and the hydrodynamic phenomena, we are able to explain the timing limitations of the deposition process from both a small and a large meniscus. The hydrodynamic relaxation time is significantly reduced in the case of the modified capillary, and the timing of SEE, which determines the deposition time, is limited by the resistor-capacitor RC time of the electrical circuit needed to drive the SEE. We have built a model that describes the almost one-dimensional motion of the liquid in the capillary during pulsing. The model has been used to estimate the hydrodynamic relaxation times related to the meniscus-to-cone and cone-to-meniscus transitions during SEE. By confining the meniscus to the inner diameter of the nozzle, we are able to deposit a volume smaller than 5 pL per SEE.
To do tissue culture in two or three dimensions? that is the question (1993)

Alexis Carrel introduced the in vitro culture of tissues in the beginning of the century utilizing a culture system that allowed the three-dimensional growth of tissues. Leighton improved upon this system by developing a substrate of sponge matrices. Other methods of three-dimensional culture include collagen gels and what are known as organ culture systems on filters or meshes. In addition, cell suspensions can be converted into multicellular spheroids, another form of three-dimensional culture. Comparison of the three-dimensional culture methods with two-dimensional culture methods has shown critical differences in the behavior of biological systems in culture. For example, in vivo-like drug responses are observed in three-dimensional but frequently not in two-dimensional cultures, indicating that drug response may be a function of tissue architecture. The in vivo mechanism of drug resistance may involve alterations in cell-cell interaction which may occur in three-dimensional culture as opposed to monolayer culture. Practical applications of three-dimensional culture include the development of a drug-response assay that correlates not only with drug resistance but also with drug sensitivity and survival of cancer patients. It has been shown that gene expression may be more in vivo-like in three-dimensional cultures than in two-dimensional monolayer cultures. For example, tumor antigens may be expressed in three-dimensional culture and not in monolayer culture. Thus, future studies utilizing three-dimensional cultures may significantly enhance our understanding of gene expression and resistance to drugs and enhance the efficacy of cancer chemotherapy by correctly predicting active drug regimens for individual patients.
Positive and Negative Selection of T Cells (2003)

A functional immune system requires the selection of T lymphocytes expressing receptors that are major histocompatibility complex restricted but tolerant to self-antigens. This selection occurs predominantly in the thymus, where lymphocyte precursors first assemble a surface receptor. In this review we summarize the current state of the field regarding the natural ligands and molecular factors required for positive and negative selection and discuss a model for how these disparate outcomes can be signaled via the same receptor. We also discuss emerging data on the selection of regulatory T cells. Such cells require a high-affinity interaction with self-antigens, yet differentiate into regulatory cells instead of being eliminated.
Sulfide Solid Electrolytes for Lithium Battery Applications (2018)

Abstract The use of solid electrolytes is a promising direction to improve the energy density of lithium‐ion batteries. However, the low ionic conductivity of many solid electrolytes currently hinders the performance of solid‐state batteries. Sulfide solid electrolytes can be processed in a number of forms (glass, glass‐ceramic, and crystalline) and have a wide range of available chemistries. Crystalline sulfide materials demonstrate ionic conductivity on par with those of liquid electrolytes through the utilization of near ideal conduction pathways. Low‐temperature processing is also possible for these materials due to their favorable mechanical properties. The main drawback of sulfide solid electrolytes remains their electrochemical stability, but this can be addressed through compositional tuning or the use of artificial solid electrolyte interphase (SEI). Implementation of sulfide solid electrolytes, with proper treatment for stability, can lead to substantial improvements in solid‐state battery performance leading to significant advancement in electric vehicle technology.
The DiGeorge anomaly as a developmental field defect (1986)

The DiGeorge "syndrome" is a characteristic malformation pattern involving craniofacial, cardiac, thymic, and parathyroid structures. Evidence is accumulating that the DiGeorge "syndrome" is actually not a syndrome, but a polytopic developmental field defect. We present evidence of causal heterogeneity of the DiGeorge anomaly. This heterogeneity will be discussed in the light of recent findings that indicate that the dysmorphogenetically reactive unit responsible for the phenotype of the DiGeorge anomaly is a population of cephalic neural crest cells.
Surface Chemistry and Electrical Properties of Germanium Nanowires (2004)

Germanium nanowires (GeNWs) with p- and n-dopants were synthesized by chemical vapor deposition (CVD) and were used to construct complementary field-effect transistors (FETs). Electrical transport and X-ray photoelectron spectroscopy (XPS) data are correlated to glean the effects of Ge surface chemistry to the electrical characteristics of GeNWs. Large hysteresis due to water molecules strongly bound to GeO(2) on GeNWs is revealed. Different oxidation behavior and hysteresis characteristics and opposite band bending due to Fermi level pinning by interface states between Ge and surface oxides are observed for p- and n-type GeNWs. Vacuum annealing above 400 degrees C is used to remove surface oxides and eliminate hysteresis in GeNW FETs. High-kappa dielectric HfO(2) films grown on clean GeNW surfaces by atomic layer deposition (ALD) using an alkylamide precursor is effective in serving as the first layer of surface passivation. Lastly, the depletion length along the radial direction of nanowires is evaluated. The result suggests that surface effects could be dominant over the "bulk" properties of small diameter wires.
Phosphine-Catalyzed [4 + 2] Annulation:  Synthesis of Cyclohexenes (2007)

Phosphine-catalyzed [4 + 2] annulations of α-alkylallenoates with activated olefins allow the efficient syntheses of cyclohexenes. Hexamethylphosphorous triamide (HMPT)-catalyzed [4 + 2] annulations of α-alkylallenoates with arylidenemalononitriles provided highly functionalized 5,5-dicyano-4,6-disubstituted cyclohex-1-enecarboxylates in excellent yields (77−98%) and moderate to high diastereoselectivities (1:2−12:1). Remarkably, the corresponding triarylphosphine-catalyzed [4 + 2] annulations of α-methylallenoate with arylidenemalononitriles manifested a polarity inversion of the 1,4-dipole synthon, providing 4,4-dicyano-5-substituted cyclohex-1-enecarboxylates in excellent yields (80−93%). The polarity inversion of α-alkylallenoates from one 1,4-dipole to another under phosphine catalysis presumably resulted from a change in the balance of the equilibrium between the phosphonium dienolate and the vinylogous phosphonium ylide intermediate.
P1‐394: Variation in placebo decline across a decade of Alzheimer's disease trials (2008)

It has been suggested that placebo-treated patients are showing slower rates of cognitive decline in recent Alzheimer's disease (AD) clinical trials compared with older trials. Systematic changes in placebo decline might impact treatment effects and AD treatment trial results. The objective of these analyses was to use an extensive database of donepezil studies to investigate: (1) variations in rates of placebo decline in AD studies conducted between 1991 and 1999, and (2) any subsequent impact on donepezil treatment effect. A meta-analysis was conducted using individual patient data from relevant randomized, double-blind, placebo-controlled studies of donepezil for AD. Data were grouped according to the year of initiation of the trials. Group 1 (pre-1995): studies initiated in 1990–1994; Group 2 (post-1995): studies initiated in 1996–1999. This cut-off is associated with the timing of donepezil registration. Changes from baseline Mini-Mental State Examination (MMSE) and Alzheimer's Disease Assessment Scale-cognitive subscale (ADAS-cog) scores up to Week 24 were compared between groups 1 and 2 for placebo only; and then between donepezil and placebo. Analyses used the last observation carried forward method. Data were available from 3748 patients who participated in 14 randomized, double-blind, placebo-controlled AD trials. Group 2 (post-1995) patients had lower baseline MMSE scores, were older, had fewer males in the population, had more comorbidity and used more concomitant medications. Least squares mean decline on the MMSE from baseline to Week 24 was significantly greater among placebo patients in group 1 (-1.26 points) compared with group 2 (-0.54 points; P = 0.026); placebo decline on the ADAS-cog was also greater in group 1 (+1.81 points) than group 2 (+1.02 points), but the difference was nonsignificant (P = 0.14). Of note, a comparable donepezil-placebo treatment difference was observed in groups 1 and 2, indicating that the treatment effect was consistent over the decade of enrolment. The results indicate that patients with AD entering clinical trials are experiencing slower rates of cognitive decline. This finding has implications for future clinical trial design and treatment planning.
Theory of an optical parametric oscillator with resonant pump and signal (1999)

We derive the properties of a pump-resonant singly resonant optical parametric oscillator for which the pump and one of the parametrically generated waves share a common cavity. Wave-vector mismatch and focusing effects are taken into account. We calculate the oscillation threshold and its dependence on emission wavelengths as the result of mode shape changes. The conversion efficiencies for signal and idler waves are calculated. It is shown that one can maximize the conversion efficiencies by optimizing mirror transmissivities. The interference effects that occur in a standing-wave geometry and the mode content of the nonresonant wave are also analyzed.