gebhart/patrepeval huggingface dataset:
The Interdependence of Subtype and Severity: Contributions of Clinical and Neuropsychological Features to Melancholia and Non-melancholia in an Outpatient Sample (2012)

Major depressive disorder is often considered to be a homogenous disorder that changes in terms of severity; however, the presence of distinct subtypes and a variety of presenting symptoms suggests much heterogeneity. Aiming to better understand the relationship between heterogeneity and diagnosis we used an exploratory approach to identify subtypes of depression on the basis of clinical symptoms and neuropsychological performance. Cluster analysis identified two groups of patients distinguished by level of cognitive dysfunction with the more severe cluster being associated with melancholic depression. While the relationship between cluster and subtype was significant, only 58% of melancholic patients were assigned to cluster 1 (the more severe cluster) and 66% of non-melancholic patients assigned to cluster 2. Subtypes also displayed a distinctive profile of impairment such that melancholic patients (n = 65) displayed more variability in attention while non-melancholic patients (n = 59) displayed memory recall impairment. While melancholia and non-melancholia are associated with a more severe and less severe form of depression respectively, findings indicate that differences between melancholia and non-melancholia are more than simple variation on severity. In summary, findings provide support for the heterogeneity of depression.
Handbook of Laboratory Animal Bacteriology (2014)

The Handbook of Laboratory Animal Bacteriology, Second Edition provides comprehensive information on all bacterial phylae found in laboratory rodents and rabbits to assist managers, veterinary pathologists and laboratory animal veterinarians in the management of these organisms. The book starts by examining the general aspects of bacteriology and h
ChemInform Abstract: SYNTHESIS OF 2‐AMINOTHIOPHENES AND THIENO(2,3‐D)PYRIMIDINES (1976)

Abstract Die Darstellung der Aminothiophen‐Verbindungen (I)‐(IV) durch Gewald‐Reaktionen entsprechender Ketone mit Cyanoacetat, Malodinitril oder Cyanacetamiden und Schwefel in Gegenwart von sek. Aminen wird beschrieben.
Subcellular localization of heparanase in human neutrophils (1992)

The subcellular localization of a heparan sulfate degrading endoglycosidase, heparanase, was studied in human neutrophils. Unstimulated cells were disrupted by nitrogen cavitation and fractionated on a Percoll density gradient into three components, separating the plasma membranes, specific granules, and azurophilic granules. Heparanase activity was measured by gel filtration analysis of 35S-labeled degradation fragments released from subendothelial extracellular matrix (ECM) or produced during incubation with soluble, ECM-derived, heparan sulfate proteoglycans. Heparanase activity was found mainly in fractions containing the specific granules; this activity was inhibited by heparin. Freezing and thawing was not needed for recovery of the enzyme from the subcellular fraction, confirming previous data about its ready release. The mechanism of the ready release of heparanase from the specific granules requires further investigation.
Hepatocyte growth factor is secreted by osteoblasts and cooperatively permits the survival of haematopoietic progenitors (2001)

Human osteoblasts (HOBs) support the growth of human haematopoietic progenitor cells, and support the survival and limited expansion of long-term culture-initiating cells. Using human CD34+ cells and the murine myelomonocytic cell line NFS-60 as targets, we previously found that one component of HOB-derived haematopoietic activity is cell-associated granulocyte colony-stimulating factor (G-CSF). However, antibody failed to neutralize all the activity, suggesting that more than one factor supports haematopoietic cells. In the present investigations, we asked whether the HOB-derived, non-G-CSF secreted activity was as a result of other known growth factors. We found that, among the cytokines expressed by HOBs, only hepatocyte growth factor (HGF) and G-CSF stimulated NFS-60 cell proliferation. HOB cells and osteosarcoma cells secreted biologically active HGF, although the levels varied considerably. Moreover, addition of neutralizing HGF antibody to CD34+ cell/HOB co-cultures resulted in a significant reduction ( approximately 50%) in the ability of the HOBs to support haematopoietic progenitor cells. These results suggest that a major component of osteoblast-derived haematopoietic activity is HGF. Secretion of HGF, in concert with cell-associated cytokines such as G-CSF, may account for the stem cell-stimulating activities of osteogenic cells and, thereby, the unique stem cell-supporting role of the osteoblasts within the bone marrow microenvironment.
Dephosphorylation of tau protein and Alzheimer paired helical filaments by calcmeurin and phosphatase‐2A (1993)

We have shown previously that brain tissue contains protein kinases which can phosphorylate tau protein to a state reminiscent of the pathological state of Alzheimer paired helical filaments (PHFs); these include proline-directed kinases which phosphorylate SP or TP motifs (such as MAP kinase and GSK-3) [Drewes et al. (1992); Mandelkow et al. (1992)], as well as a novel kinase which phosphorylates S262 of tau protein and thereby strongly reduces the binding of tau to microtubules [Biernat et al. (1993)]. Here we report on the corresponding phosphatases in brain which normally keep the 'pathological' sites free of phosphate. The major phosphatases acting on tau are calcineurin and PP-2A, but not PP-1. Both are present and active in brain extracts, they can dephosphorylate recombinant tau after prior phosphorylation with either MAP kinase, GSK-3, or brain extract, and the course of dephosphorylation can be monitored with antibodies diagnostic of the pathological state of tau. Both phosphatases also act directly on PHF tau isolated from Alzheimer brains.
Proving the Correctness of Multiprocess Programs (1977)

The inductive assertion method is generalized to permit formal, machine-verifiable proofs of correctness for multiprocess programs. Individual processes are represented by ordinary flowcharts, and no special synchronization mechanisms are assumed, so the method can be applied to a large class of multiprocess programs. A correctness proof can be designed together with the program by a hierarchical process of stepwise refinement, making the method practical for larger programs. The resulting proofs tend to be natural formalizations of the informal proofs that are now used.
Localization of subunit C (Vma5p) in the yeast vacuolar ATPase by immuno electron microscopy (2006)

Vacuolar ATPases (V1V0 -ATPases) function in proton translocation across lipid membranes of subcellular compartments. We have used antibody labeling and electron microscopy to define the position of subunit C in the vacuolar ATPase from yeast. The data show that subunit C is binding at the interface of the ATPase and proton channel, opposite from another stalk density previously identified as subunit H [Wilkens S., Inoue T., and Forgac M. (2004) Three-dimensional structure of the vacuolar ATPase - Localization of subunit H by difference imaging and chemical cross-linking. J. Biol. Chem. 279, 41942-41949]. A picture of the vacuolar ATPase stalk domain is emerging in which subunits C and H are positioned to play a role in reversible enzyme dissociation and activity silencing.
Quantifying Microbial Diversity: Morphotypes, 16S rRNA Genes, and Carotenoids of Oxygenic Phototrophs in Microbial Mats (1999)

We quantified the diversity of oxygenic phototrophic microorganisms present in eight hypersaline microbial mats on the basis of three cultivation-independent approaches. Morphological diversity was studied by microscopy. The diversity of carotenoids was examined by extraction from mat samples and high-pressure liquid chromatography analysis. The diversity of 16S rRNA genes from oxygenic phototrophic microorganisms was investigated by extraction of total DNA from mat samples, amplification of 16S rRNA gene segments from cyanobacteria and plastids of eukaryotic algae by phylum-specific PCR, and sequence-dependent separation of amplification products by denaturing-gradient gel electrophoresis. A numerical approach was introduced to correct for crowding the results of chromatographic and electrophoretic analyses. Diversity estimates typically varied up to twofold among mats. The congruence of richness estimates and Shannon-Weaver indices based on numbers and proportional abundances of unique morphotypes, 16S rRNA genes, and carotenoids unveiled the underlying diversity of oxygenic phototrophic microorganisms in the eight mat communities studied.
Schema translation into a unified model for service operation (2003)

Unified operation requires that an information model be defined systematically and that each operation system (OpS) communicate with other OpSs by translating its own local schema into a unified schema, and vice versa. A unified information model for service operation and the mechanism that translates a source schema into a target schema are presented. By evaluating the overhead needed for schema translation, it is shown that the proposed method effectively achieves unified operation.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Regulatory T Cells in Ovarian Cancer: Biology and Therapeutic Potential (2005)

Tumors express tumor-associated antigens (TAA) and thus should be the object of immune attack. Nonetheless, spontaneous clearance of established tumors is rare. Much work has demonstrated that tumors have numerous strategies either to prevent presentation of TAA, or to prevent TAA presentation in the context of T-cell co-signaling molecules. Thus, it was thought that lack of TAA-specific immunity was largely a passive process: tumors simply did not present enough TAA, or antigen-presenting cells did not have sufficient stimulatory capacity. On this basis, attempts were made to bolster TAA-specific immunity by using optimal antigen-presenting cells or by growing TAA-specific effector T cells ex vivo followed by adoptive transfer. These approaches met with some success in mouse models of human tumors, and showed some early clinical efficacy in human trials, although long-term efficacy remains to be established, and logistical problems are considerable. These studies established the concept that experimentally induced TAA-specific immunity is a rational and potentially efficacious means to treat cancer, including ovarian cancer. Nonetheless, recent work demonstrates that lack of naturally induced TAA-specific immunity is not simply a passive process. We discuss recent data clearly demonstrating that 'tumors actively prevent induction of TAA-specific immunity through induction of TAA-specific tolerance'. This tolerance is mediated in part by regulatory T cells (Tregs). Means to revert these tolerizing conditions represent a novel anticancer therapeutic stratagem. We discuss Tregs in this regard in human ovarian cancer and present evidence that depleting Treg in human cancer, including ovarian cancer, using denileukin diftitox (Ontak), improves immunity and may be therapeutic.
DINAMICA EFORTULUI SPECIFIC PROBELOR DE CAIAC ?I MODELAREA EI ÎN PROCESUL DE ANTRENAMENT (2012)

This paper purpose is to identify the main objective dimensions of effort dynamics (volume, intensity, complexity, density, hardness) and their programming conscious during training cycles to achieve a fit and maximum performance capacity growth. Dynamic monitoring effort during training cycles to achieve a fit and maximum performance continued growth in capacity. We conclude that the evolution of performance plays a major effort dynamics. The novelty, the originality of the thesis is at the level of applied research, just implement the principles of programming and control of kayak sportsmanâ€™ performance training and prove the effectiveness of this approach, the purpose of impact on the effort and default parameters on the growth dynamics of sport performance.
Probing Meiotic Recombination and Aneuploidy of Single Sperm Cells by Whole-Genome Sequencing (2012)

Meiotic recombination creates genetic diversity and ensures segregation of homologous chromosomes. Previous population analyses yielded results averaged among individuals and affected by evolutionary pressures. We sequenced 99 sperm from an Asian male by using the newly developed amplification method-multiple annealing and looping-based amplification cycles-to phase the personal genome and map recombination events at high resolution, which are nonuniformly distributed across the genome in the absence of selection pressure. The paucity of recombination near transcription start sites observed in individual sperm indicates that such a phenomenon is intrinsic to the molecular mechanism of meiosis. Interestingly, a decreased crossover frequency combined with an increase of autosomal aneuploidy is observable on a global per-sperm basis.
Chemical modification of polyester fiber surfaces by amination reactions with multifunctional amines (1986)

Abstract The feasibility of incorporating amine groups into the surface of polyester (PET) fibers by reaction with multifunctional amines was investigated. Reactions of diethylenetriamine (DETA), trethylenetetramine (TETTA), and tetraethylenepentamine (TTEPA) with PET monofilaments and with a multifilament yarn were studied. Microspectrophotometric examination of aminated fibers stained with an acid dye at low pH revealed the location and concentration of amine groups. Amination could be confined to the periphery and was found to be uniform on the fiber surface. The rate of the reaction, as revealed by acid dye staining, was characterized by an induction period followed by an autoaccelerated stage. Extent of incorporation of amine groups was found to be similar for the three amines. There is a significant improvement in water wettability due to surface amination, and the interfacial shear strength of TTEPA‐treated PET monofilaments embedded in an epoxy resin matrix was almost doubled. As the amination reaction proceeds, there is a weakening of the reacted zone in the PET due to chain scission leading to a decrease in the interfacial shear strength. Scanning electron microscopy (SEM) studies revealed that failure occurred within the filament most probably between the reacted and unreacted zones. The tensile properties of the TTEPA‐treated PET filaments were hardly affected at the investigated extents of amination.
Is Noninvasive Brachial Systolic Blood Pressure an Accurate Estimate of Central Aortic Systolic Blood Pressure? (2015)

The accuracy of nSBP-B was inferior to the n SBP-C measures in estimating iSBP-C.
[The changes of Clara cell in the distal conducting airways of patients with COPD]. (2001)

The changes of the number and function of Clara cell may be one of the factors in the development of COPD.
Corneal topography using computer analyzed rasterstereographic images (1988)

This paper describes a new method for determining corneal surface detail utilizing a modified Zeiss photo slit lamp. This system projects a grid onto the cornea through a cobalt blue filter. The tear film is stained with fluorescein, causing the projected grid pattern to be visible on the corneal surface. A video image of the grid is then digitized by an image processor which calculates surface detail by evaluating the distortion of the grid lines. Information on curvature and surface detail is obtained across the full corneal surface, both the central optical axis and peripherally beyond the limbus.
On the potential for direct or MHD conversion of power from a novel plasma source to electricity for microdistributed power applications (2002)

The generation of electricity using direct electrostatic and magnetohydrodynamic (MHD) conversion of the plasma-particle energy of small to midsize chemically assisted microwave or glow discharge plasma (CA-plasma) power sources in the range of a few hundred Watts to several tens of kilowatts for microdistributed commercial applications (e.g., household, automotive, light industry, and space-based power) is studied for the first time. In the determination of the effect of plasma parameters on conversion efficiency, careful attention was paid to the unique plasma conditions of low-pressure, low-ionization fraction, and nonthermal ion energies that are much greater than that of the thermal ions of traditional MHD but much lower than those of a fully ionized plasma typically generated for fusion experiments. The density of plasma ions and neutrals and their cross sections for processes such as charge exchange were also considered. The most important parameters were found to be charged-particle density and energy, as well as the large inventory of neutral gas atoms and molecules. Momentum and charge exchange of plasma ions with the large background fraction of neutrals represents a limitation to conversion efficiency. Two conversion technologies were examined in some detail. We considered the possibility of converting a CA-plasma using adaptations of a member of the broad category of electromagnetic direct converters previously developed for recovery and conversion of the high energy particles lost from tandem mirror and magnetically confined plasmas, and an MHD converter previously developed for conversion of high pressure combustion gases to electricity. While it was found that both conversion techniques performed well under ideal conditions for conversion of plasma to electricity showing conversion efficiencies of >50%, the tight coupling of plasma cell and converter, size limitations, particle energy, and the substantial inventory of relatively low energy neutrals may substantially reduce the efficacy of direct electrostatic converters under these conditions. However, MHD conversion of CA-plasmas appears feasible at /spl sim/50% efficiency with a simple compact design.
Double Q-learning (2010)

In some stochastic environments the well-known reinforcement learning algorithm Q-learning performs very poorly. This poor performance is caused by large overestimations of action values. These overestimations result from a positive bias that is introduced because Q-learning uses the maximum action value as an approximation for the maximum expected action value. We introduce an alternative way to approximate the maximum expected value for any set of random variables. The obtained double estimator method is shown to sometimes underestimate rather than overestimate the maximum expected value. We apply the double estimator to Q-learning to construct Double Q-learning, a new off-policy reinforcement learning algorithm. We show the new algorithm converges to the optimal policy and that it performs well in some settings in which Q-learning performs poorly due to its overestimation.
Neomycin Binding to Watson−Hoogsteen (W−H) DNA Triplex Groove:  A Model (2003)

Neomycin is the most effective aminoglycoside (groove binder) in stabilizing a DNA triple helix. It stabilizes TAT, as well as mixed base DNA triplexes, better than known DNA minor groove binders (which usually destabilize the triplex) and polyamines. Neomycin selectively stabilizes the triplex (in the presence of salt), without any effect on the DNA duplex. (1) Triplex stabilization by neomycin is salt dependent (increased KCl and MgCl(2) concentrations decrease neomycin's effectiveness, at a fixed drug concentration). (2) Triplex stabilization by neomycin is pH dependent (increased pH decreases neomycin's effectiveness, at a fixed drug concentration). (3) CD binding studies indicate approximately 5-7 base triplets/drug apparent binding site, depending upon the structure/sequence of the triplex. (4) Neomycin shows nonintercalative groove binding to the DNA triplex, as evident from viscometric studies. (5) Neomycin shows a preference for stabilization of TAT triplets but can also accommodate CGC(+) triplets. (6) Isothermal titration calorimetry (ITC) studies reveal an association constant of approximately 2 x 10(5) M(-)(1) between neomycin and an intramolecular triplex and a higher K(a) for polydA.2polydT. (7) Binding/modeling studies show a marked preference for neomycin binding to the larger W-H groove. Ring I/II amino groups and ring IV amines are proposed to be involved in the recognition process. (8) The novel selectivity of neomycin is suggested to be a function of its charge and shape complementarity to the triplex W-H groove, making neomycin the first molecule that selectively recognizes a triplex groove over a duplex groove.
Homodimerization of the β2-Adrenergic Receptor as a Prerequisite for Cell Surface Targeting (2004)

Although homodimerization has been demonstrated for a large number of G protein-coupled receptors (GPCRs), no general role has been attributed to this process. Because it is known that oligomerization plays a key role in the quality control and endoplasmic reticulum (ER) export of many proteins, we sought to determine if homodimerization could play such a role in GPCR biogenesis. Using the beta2-adrenergic receptor (beta2AR) as a model, cell fractionation studies revealed that receptor homodimerization is an event occurring as early as the ER. Supporting the hypothesis that receptor homodimerization is involved in ER processing, beta2AR mutants lacking an ER-export motif or harboring a heterologous ER-retention signal dimerized with the wild-type receptor and inhibited its trafficking to the cell surface. Finally, in addition to inhibiting receptor dimerization, disruption of the putative dimerization motif, 276GXXXGXXXL284, prevented normal trafficking of the receptor to the plasma membrane. Taken together, these data indicate that beta2AR homodimerization plays an important role in ER export and cell surface targeting.
Topical Antimicrobial Therapy for Treating Chronic Wounds (2009)

Various agents have been applied topically to treat infected wounds for millennia, but their proper role remains unclear. Topical therapy affords many potential advantages but also has disadvantages. Opinions differ on which clinical signs define wound infection and on whether quantitative microbiological studies are useful. Clinically infected wounds usually require systemic antibiotic therapy, whereas clinically uninfected wounds that are healing as expected do not require antimicrobials. There is controversy over how to treat poorly healing wounds with "secondary" signs suggesting infection; these may benefit from topical antimicrobial agents. Some evidence supports using topical agents for malodorous or burn wounds. Meta-analyses and systematic reviews suggest there are few proven indications for topical antimicrobials. Use of a newer, relatively nontoxic antiseptic (eg, cadexomer iodine or silver dressings) is preferable to use of topical antibiotics, especially agents that are available for systemic use. We provide clinically relevant information on currently available topical antimicrobial agents.