gebhart/patrepeval huggingface dataset:
Antitumor activity of the rapamycin analog CCI-779 in human primitive neuroectodermal tumor/medulloblastoma models as single agent and in combination chemotherapy. (2001)

We examined the cytotoxicity of the immunosuppressant agent rapamycin and its analogue CCI-779 in human brain tumor cell lines in vitro and in vivo as single agents and in combination with standard chemotherapeutic drugs. In the rapamycin-sensitive PNET/MB cell line DAOY, rapamycin exhibited additive cytotoxicity with cisplatin and with camptothecin. In vivo, CCI-779 delayed DAOY xenograft growth by 160% after 1 week and 240% after 2 weeks of systemic treatment, compared with controls. Single high-dose treatment induced 37% regression of tumor solume. Growth inhibition of DAOY xenografts was 1.3 times greater after simultaneous treatment with CCI-779 and cisplatin than after cisplatin alone. Interestingly, CCI-779 also produced growth inhibition of xenografts derived from U251 malignant glioma cells, a human cell line resistant to rapamycin in vitro. These studies suggest that the rapamycin analogue CCI-779 is an important new agent to investigate in the treatment of human brain tumors, particularly PNET/MB.
Skew angle detection of digitized Indian script documents (1997)

Skew angle detection of scanned documents containing most popular Indian scripts (Devnagari and Bangla) is considered. Most characters in these scripts have horizontal lines at the top, called head lines. The character head lines mostly join one another in a word and the word appears as a single component. In the proposed method the components are at first labeled. The upper envelope of a component is found by columnwise scanning from an imaginary line above the component. Portions of upper envelope satisfying the properties of digital straight line are detected. They are clustered as belonging to single text lines. Estimates from individual clusters are combined to get the skew angle. Apart from accuracy and efficiency, an advantage of the method is that character segmentation and zone detection can be readily done from head line information, which is useful in optical character recognition approaches of these scripts.
Growth, Structure, and Properties of Graphite Whiskers (1960)

Graphite whiskers have been grown in a dc arc under a pressure of 92 atmospheres of argon and at 3900°K. They are embedded in a solid matrix of graphite which builds up by diffusion of carbon vapor from the positive to the negative electrode. Diameters range from a fraction of a micron to over five microns, with recoverable lengths up to 3 cm. They consist of one or more concentric tubes, each tube being in the form of a scroll, or rolled-up sheet of graphite layers, extending continuously along the length of the whisker, with the c axis exactly perpendicular to the whisker axis. They exhibit a high degree of flexibility, tensile strengths up to 2000 kg-mm−2, Young's modulus in excess of 7×1012 dyne-cm−2, and values of room-temperature resistivity of around 65 μohm-cm, which approximates the single crystal value.
Repair of sheep articular cartilage defects with a rabbit costal perichondrial graft (1991)

A xenograft of costal rabbit perichondrium was transplanted to an articular cartilage defect in a sheep knee. After 12 weeks, cartilage was formed with increased calcification of the basal layer and a mean of 74 percent collagen type II. The synovium did not show any infiltration, indicating the absence of any immunologic reaction.
Mammary Epithelial-Specific Ablation of the Focal Adhesion Kinase Suppresses Mammary Tumorigenesis by Affecting Mammary Cancer Stem/Progenitor Cells (2009)

Focal adhesion kinase (FAK) has been implicated in the development of cancers, including those of the breast. Nevertheless, the molecular and cellular mechanisms by which FAK promotes mammary tumorigenesis in vivo are not well understood. Here, we show that targeted deletion of FAK in mouse mammary epithelium significantly suppresses mammary tumorigenesis in a well-characterized breast cancer model. Ablation of FAK leads to the depletion of a subset of bipotent cells in the tumor that express both luminal marker keratin 8/18 and basal marker keratin 5. Using mammary stem/progenitor markers, including aldehyde dehydrogenase, CD24, CD29, and CD61, we further revealed that ablation of FAK reduced the pool of cancer stem/progenitor cells in primary tumors of FAK-targeted mice and impaired their self-renewal and migration in vitro. Finally, through transplantation in NOD-SCID mice, we found that cancer stem/progenitor cells isolated from FAK-targeted mice have compromised tumorigenicity and impaired maintenance in vivo. Together, these results show a novel function of FAK in maintaining the mammary cancer stem/progenitor cell population and provide a novel mechanism by which FAK may promote breast cancer development and progression.
Notes- Biborazinyl (1961)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTNotes- BiborazinylJ HarrisCite this: J. Org. Chem. 1961, 26, 6, 2155–2156Publication Date (Print):June 1, 1961Publication History Published online27 February 2003Published inissue 1 June 1961https://pubs.acs.org/doi/10.1021/jo01065a638https://doi.org/10.1021/jo01065a638research-articleACS PublicationsRequest reuse permissionsArticle Views47Altmetric-Citations10LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
A MODEL FOR COUPLED DOPANT DIFFUSION IN SILICON (1987)

The simulation of coupled dopant diffusion in silicon is becoming increasingly important in integrated circuit technology, as device dimensions are reduced and efforts are made to reduce process complexity. Thus a need exists for accurate simulation over a wide range of diffusion conditions, based on necessity on well tested, predictive physical models.
Synthesis and testing of the first azobenzene mannobioside as photoswitchable ligand for the bacterial lectin FimH (2013)

In order to allow spatial and temporal control of carbohydrate-specific bacterial adhesion, it has become our goal to synthesise azobenzene mannosides as photoswitchable inhibitors of type 1 fimbriae-mediated adhesion of E. coli . An azobenzene mannobioside 2 was prepared and its photochromic properties were investigated. The E → Z isomerisation was found to be highly effective, yielding a long-lived ( Z )-isomer. Both isomers, E and Z , show excellent water solubility and were tested as inhibitors of mannoside-specific bacterial adhesion in solution. Their inhibitory potency was found to be equal and almost two orders of magnitude higher than that of the standard inhibitor methyl mannoside. These findings could be rationalised on the basis of computer-aided docking studies. The properties of the new azobenzene mannobioside have qualified this glycoside to be eventually employed on solid support, in order to fabricate photoswitchable adhesive surfaces.
Incretin release from gut is acutely enhanced by sugar but not by sweeteners in vivo (2008)

Glucose-dependent insulinotropic polypeptide (GIP) and glucagon-like peptide-1 (GLP-1) are released during meals from endocrine cells located in the gut mucosa and stimulate insulin secretion from pancreatic beta-cells in a glucose-dependent manner. Although the gut epithelium senses luminal sugars, the mechanism of sugar sensing and its downstream events coupled to the release of the incretin hormones are not clearly elucidated. Recently, it was reported that sucralose, a sweetener that activates the sweet receptors of taste buds, triggers incretin release from a murine enteroendocrine cell line in vitro. We confirmed that immunoreactivity of alpha-gustducin, a key G-coupled protein involved in taste sensing, is sometimes colocalized with GIP in rat duodenum. We investigated whether secretion of incretins in response to carbohydrates is mediated via taste receptors by feeding rats the sweet-tasting compounds saccharin, acesulfame potassium, d-tryptophan, sucralose, or stevia. Oral gavage of these sweeteners did not reduce the blood glucose excursion to a subsequent intraperitoneal glucose tolerance test. Neither oral sucralose nor oral stevia reduced blood glucose levels in Zucker diabetic fatty rats. Finally, whereas oral glucose increased plasma GIP levels approximately 4-fold and GLP-1 levels approximately 2.5-fold postadministration, none of the sweeteners tested significantly increased levels of these incretins. Collectively, our findings do not support the concept that release of incretins from enteroendocrine cells is triggered by carbohydrates via a pathway identical to the sensation of "sweet taste" in the tongue.
Accelerated Hybridization of Oligonucleotides to Duplex DNA (1995)

We report two strategies for accelerating the hybridization of oligonucleotides to DNA. We demonstrate that oligodeoxyribonucleotides and peptide nucleic acid oligomers hybridize to inverted repeats within duplex DNA by D-loop formation. Oligonucleotides and duplex template form an active complex, which can be recognized by T7 DNA polymerase to prime polymerization. Quantitation of polymerization products allowed the rate of hybridization to be estimated, and peptide nucleic acid oligomers and oligonucleotide-protein adducts anneal with association constants 500- and 12,000-fold greater, respectively, than the analogous unmodified oligonucleotides. Together, these results indicate that sequences within duplex DNA can be targeted by Watson-Crick base pairing and that chemical modifications can dramatically enhance the rate of strand association. These findings should facilitate targeting of oligomers for priming DNA polymerization, the detection of diagnostic sequences, and the disruption of gene expression. The observed acceleration of hybridization may offer a new perspective on the ability of RecA or other proteins to accelerate strand invasion.
Analysis by synthesis speech coding with generalized pitch prediction (1999)

A new analysis-by-synthesis speech coding structure is presented for high-quality speech coding in the 4 to 8 kb/s range. CELP with generalized pitch prediction (GPP-CELP) differs from classical code-excited linear prediction (CELP) in that for voiced segments it is the speech signal that is decomposed into a component predictable with the aid of the adaptive codebook (ACB) and a nonpredictable aperiodic component, not the LPC residual. The spectrum of the aperiodic component is estimated by linear-prediction analysis. An approximation to the aperiodic component is synthesized from a stochastic codebook of sparse pulse sequences and its spectrum is shaped by the LPC synthesis filter. The ACB contains samples of the past reconstructed signal, low-passed to increase the pitch prediction gain. For voiced segments the new structure yields higher pitch prediction gain and lower linear-prediction gain than classical CELP. Subjective and objective comparisons reveal significant advantages for GPP-CELP over classical CELP.
Antibacterial peptides and the outer membranes of gram-negative bacillixs (1997)

Microbiology Society journals contain high-quality research papers and topical review articles. We are a not-for-profit publisher and we support and invest in the microbiology community, to the benefit of everyone. This supports our principal goal to develop, expand and strengthen the networks available to our members so that they can generate new knowledge about microbes and ensure that it is shared with other communities.
Enhanced Gene Transfer with Fusogenic Liposomes Containing Vesicular Stomatitis Virus G Glycoprotein (1998)

Exposure of Lipofectin-DNA complexes to the partially purified G glycoprotein of the vesicular stomatitis virus envelope (VSV-G) results in loss of serum-mediated inhibition and in enhanced efficiency of gene transfer. Sucrose density gradient sedimentation analysis indicated that the VSV-G associates physically with the DNA-lipid complex to produce a VSV-G liposome. The ability to incorporate surrogate viral or cellular envelope components such as VSV-G into liposomes may allow more-efficient and possibly targeted gene delivery by lipofection, both in vitro and in vivo.
Enabling transactional file access via lightweight kernel extensions (2009)

Transactions offer a powerful data-access method used in many databases today trough a specialized query API. User applications, however, use a different fileaccess API (POSIX) which does not offer transactional guarantees. Applications using transactions can become simpler, smaller, easier to develop and maintain, more reliable, and more secure. We explored several techniques how to provide transactional file access with minimal impact on existing programs. Our first prototype was a standalone kernel component within the Linux kernel, but it complicated the kernel considerably and duplicated some of Linux’s existing facilities. Our second prototype was all in user level, and while it was easier to develop, it suffered from high overheads. In this paper we describe our latest prototype and the evolution that led to it. We implemented a transactional file API inside the Linux kernel which integrates easily and seamlessly with existing kernel facilities. This design is easier to maintain, simpler to integrate into existing OSs, and efficient. We evaluated our prototype and other systems under a variety of workloads. We demonstrate that our prototype’s performance is better than comparable systems and comes close to the theoretical lower bound for a log-based transaction manager. 1
Combined assessment of tau and neuronal thread protein in Alzheimer’s disease CSF (2000)

Objective: Comparative study of CSF levels of tau and AD7C-neuronal thread protein (NTP) in patients with AD and control subjects. Background: AD is characterized by neurofibrillary tangles composed of the abnormally hyperphosphorylated microtubule-associated protein tau. AD7C-NTP is a proposed AD marker expressed at early stages of neurofibrillary degeneration. Methods: Enzyme-linked immunosorbent assays specific for tau and AD7C-NTP. CSF samples were obtained from 35 demented patients (25 with antemortem clinical diagnosis of probable AD, 5 with neuropathologic diagnosis of definite AD, 5 with Lewy body pathology), 29 nondemented patients with PD, and 16 elderly healthy control subjects. Receiver operating characteristics (ROC) and multivariate discriminant analysis for AD versus controls. Correlational analysis of CSF tau and AD7C-NTP and of each marker with Mini-Mental State Examination (MMSE) scores was performed. Results: Levels of both tau and AD7C-NTP were significantly elevated in the AD patients compared with control subjects. ROC analysis showed that CSF tau distinguished between patients with AD and nondemented control subjects with 63% sensitivity and 89% specificity, AD7C-NTP with 70% sensitivity and 87% specificity. Combined evaluation of both markers with discriminant analysis raised the specificity to 93% at a 63% sensitivity level. Both markers positively correlated with each other within the AD group, but not among control subjects. CSF levels of AD7C-NTP, but not of tau, showed a small but significant inverse correlation ( r = −0.43) with MMSE scores of AD patients. Conclusions: CSF levels of tau and AD7C-NTP may be useful biomarkers for AD.
Structure and Properties of Small Molecule−Polymer Blend Semiconductors for Organic Thin Film Transistors (2008)

A comprehensive structural and electrical characterization of solution-processed blend films of 6,13-bis(triisopropylsilylethynyl) pentacene (TIPS-pentacene) semiconductor and poly(alpha-methylstyrene) (PalphaMS) insulator was performed to understand and optimize the blend semiconductor films, which are very attractive as the active layer in solution-processed organic thin-film transistors (OTFTs). Our study, based on careful measurements of specular neutron reflectivity and grazing-incidence X-ray diffraction, showed that the blends with a low molecular-mass PalphaMS exhibited a strong segregation of TIPS-pentacene only at the air interface, but surprisingly the blends with a high molecular-mass PalphaMS showed a strong segregation of TIPS-pentacene at both air and bottom substrate interfaces with high crystallinity and desired orientation. This finding led to the preparation of a TIPS-pentacene/PalphaMS blend active layer with superior performance characteristics (field-effect mobility, on/off ratio, and threshold voltage) over those of neat TIPS-pentacene, as well as the solution-processability of technologically attractive bottom-gate/bottom-contact OTFT devices.
Targeting simian virus 40 T antigen to the osteoclast in transgenic mice causes osteoclast tumors and transformation and apoptosis of osteoclasts (1995)

Osteoclasts are terminally differentiated cells that express tartrate-resistant acid phosphatase (TRAP) at a higher level than other normal cells. Therefore, in an attempt to develop immortalized osteoclasts, we produced two lines of transgenic mice in which expression of the simian virus 40 T antigen oncogene was targeted to osteoclasts using the TRAP gene promoter. Osteoclasts were increased in number in bones from both lines. More than 50% of them appeared morphologically transformed, 2-5% were mitotic, but, unexpectedly, 5% were apoptotic. Osteoclast tumors were observed occasionally in one line of mice (line 4), and sheets of TRAP-positive cells (tumorlets) developed in most mice in both lines. Although cells isolated from these tumorlets formed multinucleated TRAP-positive cells that resorbed bone in vitro, to date we have been unable to develop an immortalized osteoclast cell line from them. Osteoclasts from one line (line 5) had reduced ruffled border formation and a higher level of T-antigen expression than osteoclasts in the other line (line 4), and these features were associated with the presence of osteopetrosis. However, osteoclasts from these osteopetrotic mice and from line 4 mice resorbed bone normally when the mice were treated with interleukin-1. These findings indicate that T antigen can be targeted to osteoclasts in transgenic mice and causes osteoclast transformation, tumors, mitosis, and apoptosis. When T antigen is expressed at high levels, functional impairment of osteoclasts can be detected. Furthermore, these results suggest that T antigen is insufficient on its own to immortalize cells in the osteoclast lineage.
Functional and Nutritional Quality of Protein and Lipid Recovered from Fish Processing by-Products and Underutilized Aquatic Species Using Isoelectric Solubilization / Precipitation (2009)

The isoelectric behavior of food proteins has been well characterized in the food science literature. The isoelectric point (pI) of a protein is a pH at which the protein maintains a zero net electrostatic charge. In this state, protein-protein hydrophobic interactions overcome protein-water electrostatic interactions and the minimum solubility of proteins results. Consequently, several food science laboratories have begun active research on the application of the pI to recover functional muscle proteins, particularly fish myofibrillar proteins. Fish stocks are declining and several fisheries are currently over-exploited and may collapse by mid century. Fish processing by-products are considerable and include heads, frames, viscera, and etc. By-products are land-filled, ground-and-discarded or otherwise diverted from human consumption. By-products retain ample muscle proteins and oil. The oil contains omega-3 fatty acids. Due to the lack of commercially available technology to recover proteins and lipids from fish processing by-products or underutilized aquatic species, this tremendous resource is currently unavailable for human consumption. Fish proteins and oil from otherwise low-value by-products can be recovered using isoelectric solubilization/precipitation with recovery yields of approximately 90%. Recovered proteins and oil retain functionality and nutritional value for human food products. This article reviews the fundamental biochemical principles of food proteins and lipids as well as their structure and interaction with water in relation to the isoelectric behavior. Additionally, the most recent developments regarding application of isoelectric solubilization/precipitation to recover functional and nutritious proteins and oil from fish processing byproducts and underutilized aquatic species are addressed.
Transport of glutathione conjugates and chemotherapeutic drugs by RLIP76 (RALBP1): A novel link between G‐protein and tyrosine kinase signaling and drug resistance (2003)

Our studies have shown that RLIP76 (RALBP1), a 76 kDa Ral-binding, Rho/Rac-GAP and Ral effector protein, is a novel multispecific transporter of xenobiotics as well as GS-Es. Like previously characterized ABC transporters, it mediates ATP-dependent transport of structurally unrelated amphiphilic xenobiotics and displays inherent ATPase activity, which is stimulated by its substrate allocrites. It does not have significant sequence homology with ABC transporters and differs from the ABC transporters in several other important aspects, including (i) lack of any close homologs in humans, (ii) lack of a classical Walker domain, (iii) integral membrane association without clearly defined transmembrane domains and (iv) its role as a direct link to Ras/Ral/Rho and EGF-R signaling through its multifunctional nature, including GAP activity, regulation of exocytosis as well as clathrin-coated pit-mediated receptor endocytosis. Its multifunctional nature derives from the presence of multiple motifs, including a Rho/Rac GAP domain, a Ral effector domain binding motif, 2 distinct ATP-binding domains, a H(+)-ATPase domain, PKC and tyrosine kinase phosphorylation sites and the ability to undergo fragmentation into multiple smaller peptides which participate as components of macromolecular functional complexes. One of the physiologic functions of RLIP76 is regulation of intracellular concentration of the electrophilic intermediates of oxidative lipid metabolism by mediating efflux of GS-E formed from oxidative degradation of arachidonic acid, including leukotrienes and the 4HNE-GSH conjugate. RLIP76-mediated transport of amphiphilic chemotherapeutic agents such as anthracyclines and vinca alkaloids as well as GS-E produced during oxidative metabolism places this multifunctional protein in a central role as a resistance mechanism for preventing apoptosis caused by chemotherapeutic agents and a variety of external/internal stressors, including oxidative stress, heat shock and radiation.