gebhart/patrepeval huggingface dataset:
The food paths (1993)

This chapter discusses food paths. Food paths are the ‘paths’ travelled foods from the places they are produced to the people who eat them. Topics covered include factors that alter the amounts of food travelling along food paths, different stages of the food path, obstacles to food production by family farmers, increasing food production, and helping people buy enough food.
Comparison of the NO and HNO Donating Properties of Diazeniumdiolates:  Primary Amine Adducts Release HNO in Vivo (2005)

Diazeniumdiolates, more commonly referred to as NONOates, have been extremely useful in the investigation of the biological effects of nitric oxide (NO) and related nitrogen oxides. The NONOate Angeli's salt (Na(2)N(2)O(3)) releases nitroxyl (HNO) under physiological conditions and exhibits unique cardiovascular features (i.e., positive inotropy/lusitropy) that may have relevance for pharmacological treatment of heart failure. In the search for new, organic-based compounds that release HNO, we examined isopropylamine NONOate (IPA/NO; Na[(CH(3))(2)CHNH(N(O)NO]), which is an adduct of NO and a primary amine. The chemical and pharmacological properties of IPA/NO were compared to those of Angeli's salt and a NO-producing NONOate, DEA/NO (Na[Et(2)NN(O)NO]), which is a secondary amine adduct. Under physiological conditions IPA/NO exhibited all the markers of HNO production (e.g., reductive nitrosylation, thiol reactivity, positive inotropy). These data suggest that primary amine NONOates may be useful as HNO donors in complement to the existing series of secondary amine NONOates, which are well-characterized NO donors.
Adsorption and Spontaneous Rupture of Vesicles Composed of Two Types of Lipids (2006)

To analyze the adsorption of single vesicles composed of two types of lipids (e.g., zwitterionic and positively charged lipids or zwitterionic and negatively charged lipids), we propose a statistical model taking into account lipid-surface interactions, lipid-lipid lateral interactions, and vesicle bending energy. Our treatment specifies how these parameters govern vesicle adsorption, shows how the radius of the vesicle-surface contact area may depend on the vesicle composition, and clarifies the conditions for vesicle rupture.
Role of neurotensin in pancreatic secretion. (1984)

The objective of this study was to examine the effect of neurotensin (NT) on pancreatic exocrine secretion in awake dogs (n = 5) with chronic gastric and pancreatic fistulas. Intravenous (IV) infusion of NT (1 microgram/kg/hr) alone significantly stimulated pancreatic secretion of protein and bicarbonate without causing release of secretin or cholecystokinin-33 (CCK-33). IV NT potentiated the secretory response of pancreatic bicarbonate to the intraduodenal (ID) infusion of HCl alone and to ID infusions of the amino acids, phenylalanine and tryptophan (AA) alone, as well as to an ID mixture of AA plus HCl. IV NT acted in an additive manner with ID AA, ID HCl, or ID AA plus HCl in the stimulation of pancreatic protein output. The addition of IV NT to each luminal secretagogue (ID AA, ID HCl, or ID AA plus HCl) failed to elevate plasma concentrations of CCK-33 or secretin over those observed during ID infusion of each secretagogue alone. ID corn oil (Lipomul) stimulated the simultaneous release of CCK-33, NT, and secretin significantly; IV infusion of NT (0.5 microgram/kg/hr) resulted in plasma NT levels that were similar to levels observed after ID Lipomul. These studies provide evidence that endogenous NT, CCK, and secretin may interact in the physiologic regulation of pancreatic exocrine secretion.
HISTORY OF LACHISH (2014)

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WAND: A 128-channel, closed-loop, wireless artifact-free neuromodulation device (2017)

Closed-loop neuromodulation systems aim to treat a variety of neurological conditions by dynamically delivering and adjusting therapeutic electrical stimulation in response to a patient's neural state, recorded in real-time. Existing systems are limited by low channel counts, lack of algorithmic flexibility, and distortion of recorded signals from large, persistent stimulation artifacts. Here, we describe a device that enables new research applications requiring high-throughput data streaming, low-latency biosignal processing, and truly simultaneous sensing and stimulation. The Wireless Artifact-free Neuromodulation Device (WAND) is a miniaturized, wireless neural interface capable of recording and stimulating on 128 channels with on-board processing to fully cancel stimulation artifacts, detect neural biomarkers, and automatically adjust stimulation parameters in a closed-loop fashion. It combines custom application specific integrated circuits (ASICs), an on-board FPGA, and a low-power bidirectional radio. We validate wireless, long-term recordings of local field potentials (LFP) and real-time cancellation of stimulation artifacts in a behaving nonhuman primate (NHP). We use WAND to demonstrate a closed-loop stimulation paradigm to disrupt movement preparatory activity during a delayed-reach task in a NHP in vivo. This wireless device, leveraging custom ASICs for both neural recording and electrical stimulation modalities, makes possible a neural interface platform technology to significantly advance both neuroscientific discovery and preclinical investigations of stimulation-based therapeutic interventions.
In vivo correction of a Menkes disease model using antisense oligonucleotides (2008)

Although the molecular basis of many inherited metabolic diseases has been defined, the availability of effective therapies in such disorders remains problematic. Menkes disease is a fatal neurodegenerative disorder due to loss-of-function mutations in the ATP7A gene encoding a copper-transporting P-type Atpase. To develop therapeutic approaches in affected patients, we have identified a zebrafish model of Menkes disease termed calamity that results from splicing defects in the zebrafish orthologue of the ATP7A gene. Embryonic-recessive lethal mutants have impaired copper homeostasis that results in absent melanin pigmentation, impaired notochord formation, and hindbrain neurodegeneration. In this current study, we have attempted to rescue these striking phenotypic alterations by using a series of antisense morpholino oligonucleotides directed against the splice-site junctions of two mutant calamity alleles. Our findings reveal a robust and complete correction of the copper-deficient defects of calamity in association with the generation of the WT Menkes protein in all rescued mutants. Interestingly, a quantitative analysis of atp7a-specific transcripts suggests that competitive translational regulation may account for the synthesis of WT protein in these embryos. This in vivo correction of Menkes disease through the rescue of aberrant splicing may provide therapeutic options in this fatal disease and illustrates the potential for zebrafish models of human genetic disease in the development of treatments based on the principles of interactions of synthetic oligonucleotide analogues with mRNA.
Epitope Affinity Chromatography and Biophysical Studies of Monoclonal Antibodies and Recombinant Antibody Fragments (2002)

Peptide epitope affinity chromatography is a powerful technique for the purification of antibodies. This study aims to demonstrate the versatility of the technique and to show how biophysical techniques such as circular dichroism (CD) and fluorescence quenching (FQ) can aid the rational design of affinity ligands and characterization of antibody-based reagents. The performance of a number of peptide ligands for the purification of a range of different antibodies and recombinant fragments is investigated by automated fast-protein liquid chromatography. Purified products are analyzed for purity by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. They are then radiolabelled and the immunoreactivity is determined. Ligands are analyzed for secondary structural characteristics by CD and for binding affinity by FQ. Finally, a study is performed to investigate the thermal stability of a recombinant antibody fragment by CD analysis. It is found that simple ligand modifications such as the introduction of a C-terminal cysteine residue can improve purification performance. The FQ studies show that the modified peptide has a higher affinity for antibody. The CD analysis shows that it has a tendency to dimerize because of the formation of disulfide bonds. The versatility of epitope affinity is demonstrated through the purification of a recombinant diabody (dbFv) and by the use of a separate peptide matrix for the purification of an unrelated antibody. All studies result in antibody preparations of high purity and immunoreactivity. The CD analysis of the dbFv shows that it is denatured at 37 degrees C and is therefore unsuitable as a targeting reagent for use in humans in its present form. It is concluded that epitope affinity chromatography coupled with biophysical analyses plays an important role in the production and characterization of antibody-based reagents for targeted diagnosis and therapy of human diseases.
False resurrections: Distinguishing regenerated from spared axons in the injured central nervous system (2003)

Abstract Several recent studies report that axon regeneration can be induced in the mature mammalian nervous system by novel treatments or genetic manipulations. In assessing these reports, it is important to be mindful of the history of regeneration research, which is littered with the corpses of studies that reported regeneration that later proved incorrect. One important reason is the “spared axon conundrum,” in which axons that survive a lesion are mistakenly identified as having regenerated. Here, we illustrate the problem and propose criteria that may be used to identify regenerated vs. spared axons, focusing on the injured spinal cord. J. Comp. Neurol. 459:1–8, 2003. © 2003 Wiley‐Liss, Inc.
Synthesis of the cyclophane tetramethoxyturriane: a derivative of the phenolic cyclophanes of Grevillea striata R. Br. (1990)

The synthesis of 9,10,11,12,13,14,15,16,17,18,19,20,21,22-tetradecahydro-2,4,6,24-tetramethoxy-5,8-ethenobenzocycloeicosene (tetramethoxyturriane)(9) a derivative of the phenolic cyclophanes extracted from the wood of Grevillea striata R.Br., is reported. The key steps in this synthesis were the construction of the biphenyl linkage of the molecule using dihydro-oxazole chemistry and the closure of the macrocycle by oxidative coupling of a diacetylene.
Seed Development and Germination (2017)

Part 1 Seed morphology and development: the seed - structure and function morphogenetic processes in embryo development of maize. Part 2 Storage compounds - synthesis and accumulation: transport and accumulation of reserve materials in developing seeds - the seed as a sink seed storage proteins in cereals seed storage proteins in legumes regulation of seed storage protein gene expression synthesis of embryo specific protein during seed development carbohydrate biosynthesis in seeds lipid biosynthesis in developing seeds synthesis and transport of oil body proteins (oleosins) in seeds mechanisms and regulation of mineral storage during seed development. Part 3 From seed development to germination: mechanisms of dessication tolerance in seeds regulatory mechanisms in the transition from seed development to germination genetic control of hormone role in seed development and germination water relations in germination control of seed dormancy and germination in the gaseous environment (O2, CO2, C2H4) recent advances in the control of germination by light and temperature synthesis and secretion of hydrolytic enzymes during germination carbohydrate degradation during germination control of mobilization of storage compounds following germination of dicotyledonous seeds. Part 4 Ecology of germination: pollinators and seed production maternal and environmental effects on seed quality and germination seed bank ecology inhibition and promotion of seed germination in soil - dormancy cycles modelling seed germination of weeds seed germination of root parasitic plants seed germination of halophytes allelopathy and germination seed germination of desert plants. Part 5 Seed quality improvement - technological advances: loss of seed viability in storage - cytological, biochemical, and genetic aspects the implications of seed-associated mycoflora during storage biochemical processes during osmotic priming of seeds improvement of protein quality in seeds overproduction of essential amino acids in seeds artificial seeds.
Optimization of the Relaxivity of MRI Contrast Agents:  Effect of Poly(ethylene glycol) Chains on the Water-Exchange Rates of GdIII Complexes (2001)

ADVERTISEMENT RETURN TO ISSUEPREVCommunicationNEXTOptimization of the Relaxivity of MRI Contrast Agents: Effect of Poly(ethylene glycol) Chains on the Water-Exchange Rates of GdIII ComplexesDan M. J. Doble, Mauro Botta, Jay Wang, Silvio Aime, Alessandro Barge, and Kenneth N. RaymondView Author Information Department of Chemistry University of California Berkeley, California 94720 Cite this: J. Am. Chem. Soc. 2001, 123, 43, 10758–10759Publication Date (Web):October 9, 2001Publication History Received30 April 2001Published online9 October 2001Published inissue 31 October 2001https://pubs.acs.org/doi/10.1021/ja011085mhttps://doi.org/10.1021/ja011085mrapid-communicationACS PublicationsCopyright © 2001 American Chemical SocietyRequest reuse permissionsArticle Views1062Altmetric-Citations81LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information SUBJECTS:Alcohols,Imaging agents,Ligands,Magnetic resonance imaging,Molecules Get e-Alerts
Modulation of growth factor receptor function by isoform heterodimerization. (1996)

Activation of prolactin (PRL)-dependent signaling occurs as the result of ligand-induced dimerization of receptor (PRLr). Although three PRLr isoforms (short, intermediate, and long) have been characterized and are variably coexpressed in PRL-responsive tissues, the functional effects of ligand-induced PRLr isoform heterodimerization have not been examined. To determine whether heterodimeric PRLr complexes were capable of ligand-induced signaling and cellular proliferation, chimeras consisting of the extracellular domain of either the alpha or beta subunit of human granulocyte-macrophage colony-stimulating factor receptor (GM-CSFr) and the intracellular domain of the rat intermediate or short PRLr isoforms (PRLr-I or PRLr-S) were synthesized. Because high affinity binding of GM-CSF is mediated by the extracellular domain of one alpha and beta GM-CSFr pair, use of GM-CSFr/PRLr chimera specifically directed the dimerization of the PRLr intracellular domains within ligand-receptor complexes. Stable transfection of these constructs into the Ba/F3 line was demonstrated by Northern blot and immunoprecipitation analyses. Flow cytometry revealed specific binding of a phycoerythrin-conjugated human GM-CSF to the transfectants, confirming cell surface expression of the chimeric receptors. When tested for their ability to proliferate in response to GM-CSF, only chimeric transfectants expressing GM-CSFr/PRLr-I homodimers demonstrated significant [3H]thymidine incorporation. GM-CSF stimulation of transfectants expressing either GM-CSFr/PRLr-S homodimers or GM-CSFr/PRLr-S+1 heterodimers failed to induce proliferation. Consistent with these data, the GM-CSF-induced activation of two phosphotyrosine kinases, Jak2 and Fyn, was observed only in homodimeric GM-CSFr/PRLr-I transfectants. These results show that the PRLr-S functions as a dominant negative isoform, down-regulating both signaling and proliferation mediated by the receptor complex. Thus, structural motifs necessary for Jak2 and Fyn activation within the carboxy terminus of the PRLr-I, absent in the PRLr-S, are required in each member of the dimeric PRLr complex.
Synthetic (S)-5-(benzoyloxy)-6-oxohexanoic acid ethyl ester and [S,S-(E)-3-(hydroxymethyl)oxiranebutanoic acid methyl ester, important synthons for leukotrienes B4 and A4, from D-arabinose (1988)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSynthetic (S)-5-(benzoyloxy)-6-oxohexanoic acid ethyl ester and [S,S-(E)-3-(hydroxymethyl)oxiranebutanoic acid methyl ester, important synthons for leukotrienes B4 and A4, from D-arabinoseHubert Maehr, Agostino Perrotta, and Joanne SmallheerCite this: J. Org. Chem. 1988, 53, 4, 832–836Publication Date (Print):February 1, 1988Publication History Published online1 May 2002Published inissue 1 February 1988https://pubs.acs.org/doi/10.1021/jo00239a028https://doi.org/10.1021/jo00239a028research-articleACS PublicationsRequest reuse permissionsArticle Views218Altmetric-Citations13LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
LUMA interacts with emerin and influences its distribution at the inner nuclear membrane (2008)

We present here a first characterization of LUMA, an unique integral inner nuclear membrane (INM) protein. LUMA is a highly conserved protein even in some bacteria and shares a PFAM domain of unknown function with orthologs from many species. Assessing LUMA topology by using protease protection of membrane-inserted LUMA and antibody epitope accessibility assays reveals that LUMA contains four transmembrane domains and a large hydrophilic domain located between membrane spans 1 and 2. The large hydrophilic domain is exposed to the perinuclear space whereas both LUMA termini reside cyto- or nucleoplasmically. Nuclear envelope targeting of LUMA mainly depends on the membrane spans. LUMA's transmembrane domains also promote homooligomerization. LUMA binds A- and B-type lamins and depends on A-type lamins for its INM localization. Furthermore, it interacts with emerin. Both downregulation of LUMA and overexpression of dominant-negative acting LUMA fragments causes redistribution of emerin. We propose that LUMA functions as a tetraspanin-like membrane organizer and has the potential to contribute to the pathomechanism of dystrophic diseases, such as Emery-Dreifuss muscular dystrophy.
Methylprednisolone or tirilazad mesylate administration after acute spinal cord injury: 1-year follow up (1998)

For patients in whom MP therapy is initiated within 3 hours of injury, 24-hour maintenance is appropriate. Patients starting therapy 3 to 8 hours after injury should be maintained on the regimen for 48 hours unless there are complicating medical factors.
Polymorphisms in human H chain V region genes from the VHIII gene family. (1989)

Polymorphisms of the Ig H chain V region (VH) genes were examined with probes from the coding and flanking regions of a gene from the largest VH gene family, VHIII. The 5'-flanking probe gave the simplest pattern and revealed the largest number of polymorphic fragments. Analysis of unrelated individuals and of families identified five polymorphic loci. Two alleles were detected for each of two of the loci, whereas a polymorphic band was scored as present or absent for the other three loci. The polymorphic fragments segregated in the expected Mendelian fashion and parental haplotypes could be assigned in all cases. Comparison of the patterns obtained with the flanking and coding region probes suggests that the human VHIII gene family is highly polymorphic and may contain several hundred V genes. This method, as well as the polymorphism detected, can be used to investigate the organization and germ-line variation of H chain V genes and their inheritance in normal individuals and in individuals with immunologic disorders.
The human T-lymphotropic virus type I tax gene can cooperate with the ras oncogene to induce neoplastic transformation of cells. (1990)

Epidemiologic studies have linked infection by the human T-lymphotropic virus type I (HTLV-I) with the development of adult T-cell leukemia. The low penetrance of the virus and the long latency for disease manifestation are factors that obscure the role of HTLV-I infection in oncogenesis. We have used an in vitro transformation assay system to determine directly whether the HTLV-I tax gene has transformation potential. Transfection of the tax gene alone into early-passage rat embryo fibroblasts did not induce morphological alterations. However, cotransfection of tax with the selectable marker plasmid pRSVneo gave rise to G418-resistant colonies that could be established as immortalized cell lines. Cotransfection of tax with the ras oncogene into rat embryo fibroblasts gave rise to foci of transformed cells that were highly tumorigenic in nude mice. These data represent a direct demonstration of the oncogenic potential of the tax gene in nonlymphoid cells and establish HTLV-I as a transforming virus.
A radiotelemetry pill for the measurement of ionising radiation using a mercuric iodide detector (1978)

A small radiation measuring pill is briefly described which utilises the principles of radiotelemetry and the properties of a room temperature semiconductor radiation detector such as mercuric iodide. By transmitting a radio signal to a remote receiver the pill could be an effective tool in localising bleeding sites along the gastrointestinal tract and also possibly in the diagnosis of gastrointestinal carcinoma. Other uses of the radiopill are suggested. The size of the pill is 27 mm x 10 mm diameter and consists of a mercuric iodide crystal, an amplifier, a frequency modulated transmitter and one battery. The radiotransmitter operates at about 106 MHz and has a range of about 10m, and the sensitivity of the pill has been found for 99Tcm, 131I and 32P.