gebhart/patrepeval huggingface dataset:
The functional organization of posterior parietal association cortex (1980)

Abstract Posterior parietal cortex has traditionally been considered to be a sensory association area in which higher-order processing and intermodal integration of incoming sensory information occurs. In this paper, evidence from clinical reports and from lesion and behavioral-electrophysiological experiments using monkeys is reviewed and discussed in relation to the overall functional organization of posterior parietal association cortex, and particularly with respect to a proposed posterior parietal mechanism concerned with the initiation and control of certain classes of eye and limb movements. Preliminary data from studies of the effects of posterior parietal lesions on oculomotor control in monkeys are reported. The behavioral effects of lesions of posterior parietal cortex in monkeys have been found to be similar to those which follow analogous damage of the minor hemisphere in humans, while behavioral-electrophysiological experiments have disclosed classes of neurons in this area which have functional properties closely related to the behavioral acts that are disrupted by lesions of the area. On the basis of current data from these areas of study, it is proposed that the sensory association model of posterior parietal function is inadequate to account for the complexities of the present evidence. Instead, it now appears that many diverse neural mechanisms are located in part in parietal cortex, that some of these mechanisms are involved in sensory processing and perceptual functions, but that others participate in motor control, and that still others are involved in attentional, motivational, or emotional processes. It is further proposed that the elementary units of these various neural mechanisms are distributed within posterior parietal cortex according to the columnar hypothesis of Mountcastle.
The Experimental Herbicide CGA 325′615 Inhibits Synthesis of Crystalline Cellulose and Causes Accumulation of Non-Crystalline β-1,4-Glucan Associated with CesA Protein (2001)

Developing cotton (Gossypium hirsutum) fibers, cultured in vitro with their associated ovules, were used to compare the effects of two herbicides that inhibit cellulose synthesis: 2,6-dichlorobenzonitrile (DCB) and an experimental thiatriazine-based herbicide, CGA 325'615. CGA 325'615 in nanomolar concentrations or DCB in micromolar concentrations causes inhibition of synthesis of crystalline cellulose. Unlike DCB, CGA 325'615 also causes concomitant accumulation of non-crystalline beta-1,4-glucan that can be at least partially solubilized from fiber walls with ammonium oxalate. The unusual solubility of this accumulated glucan may be explained by its strong association with protein. Treatment of the glucan fraction with protease changes its size distribution and leads to precipitation of the glucan. Treatment of the glucan fraction with cellulase digests the glucan and also releases protein that has been characterized as GhCesA-1 and GhCesA-2--proteins that are believed to represent the catalytic subunit of cellulose synthase. The fact that cellulase treatment is required to release this protein indicates an extremely tight association of the glucan with the CesA proteins. In addition, CGA 325'615, but not DCB, also causes accumulation of CesA protein and a membrane-associated cellulase in the membrane fraction of fibers. In addition to the effects of CGA 325'615 on levels of both of these proteins, the level of both also shows coordinate regulation during fiber development, further suggesting they are both important for cellulose synthesis. The accumulation of non-crystalline glucan caused by CGA 325'615 mimics the phenotype of the cellulose-deficient rsw1 mutant of Arabidopsis that also accumulates an apparently similar glucan (T. Arioli, L. Peng, A.S. Betzner, J. Burn, W. Wittke, W. Herth, C. Camilleri, H. Hofte, J. Plazinski, R. Birch et al. [1998] Science 279: 717).
A Minor, Sweet Cucurbitane Glycoside from Siraitia Grosvenorii (2009)

A minor, sweet cucurbitane-glycoside, named iso-mogroside V (1), was isolated from Luo Han Guo (Siraitia grosvenorii (Swingle) C. Jeffery) along with five previously reported mogrosides. The structure of iso-mogroside V, 3-[(4-O-beta-D-glucopyranosyl-beta-D-glucopyranosyl)oxy]-mogrol-24-O-beta-D-glucopyranosyl-(1-->2)-O-[beta-D-glucopyranosyl-(1-->6)]beta-D-glucopyranoside, was established on the basis of extensive 2D-NMR (COSY, TOCSY, NOESY, HSQC, and HMBC) and LCMS analyses. The five known mogrosides were identified as mogroside V (2), 11-oxo-mogroside V (3), siamenoside I (4), mogrosides IVa (5) and IVe (6). Iso-mogroside V was determined to be approximately 500 times sweeter than 0.5% (w/v) sucrose.
Kinetics of Glucose Epimerization and Decomposition in Subcritical and Supercritical Water (1997)

Glucose decomposition kinetics in subcritical and supercritical water were studied for the temperatures 573, 623, and 673 K, pressures between 25 and 40 MPa, and residence times between 0.02 and 2 s. Glucose decomposition products were fructose, saccharinic acids, erythrose, glyceraldehyde, 1,6-anhydroglucose, dihydroxyacetone, pyruvaldehyde, and small amounts of 5-hydroxymethylfurfural. Fructose was also studied and found to decompose to products similar to those of glucose, except that its epimerization to glucose was negligibly low and no formation of 1,6-anhydroglucose was detected. We concluded that only the forward epimerization of glucose to fructose was important. The glucose decomposition pathway could be described in terms of a forward epimerization rate, rgf, a fructose to decomposition products rate, rf, and a glucose to decomposition products rate, rg. A kinetic model based on this pathway gave good correlation of the experimental data. In the subcritical region, rg, rf, and rgf showed only small changes with pressure at a given temperature. In the supercritical region, the rate of glucose decomposition decreased with pressure at a given temperature. The reason for this decrease was mainly due to the decrease in rgf. The pressure effect in the supercritical region shows that there is a shift among the kinetic rates, which can lead to higher selectivity for glucose when decomposing cellulosic materials.
Motion-based motion deblurring (2004)

Motion blur due to camera motion can significantly degrade the quality of an image. Since the path of the camera motion can be arbitrary, deblurring of motion blurred images is a hard problem. Previous methods to deal with this problem have included blind restoration of motion blurred images, optical correction using stabilized lenses, and special cmos sensors that limit the exposure time in the presence of motion. In this paper, we exploit the fundamental trade off between spatial resolution and temporal resolution to construct a hybrid camera that can measure its own motion during image integration. The acquired motion information is used to compute a point spread function (psf) that represents the path of the camera during integration. This psf is then used to deblur the image. To verify the feasibility of hybrid imaging for motion deblurring, we have implemented a prototype hybrid camera. This prototype system was evaluated in different indoor and outdoor scenes using long exposures and complex camera motion paths. The results show that, with minimal resources, hybrid imaging outperforms previous approaches to the motion blur problem. We conclude with a brief discussion on how our ideas can be extended beyond the case of global camera motion to the case where individual objects in the scene move with different velocities.
A 1,536-Well cAMP Assay for Gs- and Gi-Coupled Receptors Using Enzyme Fragmentation Complementation (2004)

Guanosine triphosphate binding protein (G protein)-coupled receptors (GPCRs) are a large class of pharmaceutical drug targets. With the increasing popularity of functional assays for high throughput screening, there arises an increasing need for robust second messenger assays that reflect GPCR activation and are readily amenable for miniaturization. GPCRs that upon agonist stimulation modulate adenylyl cyclase activity, and, consequently, cellular cyclic adenosine monophosphate (cAMP) levels, via the G protein Gs or Gi, form a subset of therapeutic targets. While there are several cAMP assays currently available, most are not scalable for miniaturization into the 1536-well format employed for automated high throughput screening of large chemical libraries. Here, we describe a cAMP assay based on the enzyme fragmentation complementation (EFC) of beta-galactosidase. In this assay, recombinant cells expressing Gs- or Gi-coupled receptors exhibit robust and reproducible pharmacology for agonists and antagonists, as measured by cAMP levels. Furthermore, the EFC cAMP assay offers sufficient sensitivity to be used with cells expressing endogenous GPCRs. We demonstrate the miniaturization of this assay into a 1536-well format with comparable sensitivity and plate statistics to those of the 384-well assay for both Gs- and Gi-coupled receptors, and its suitability for miniaturized high throughput screening.
Primary structure of a human trifunctional enzyme. Isolation of a cDNA encoding methylenetetrahydrofolate dehydrogenase-methenyltetrahydrofolate cyclohydrolase-formyltetrahydrofolate synthetase. (1988)

A DNA clone complementary to the messenger RNA encoding the human trifunctional enzyme 5,10-methylenetetrahydrofolate dehydrogenase-5,10-methenyl-tetrahydrofolate cyclohydrolase-10-formyltetrahydrofolate synthetase has been isolated from a lambda gt10 library. In vitro transcription-translation of the 3.1-kilobase cDNA clone yields a protein of 101 kDa, which is of identical size and exhibits the same immunoreactivity as the enzyme purified from human liver. A coding region of 2805 base pairs in the cDNA encodes a protein of 935 amino acids. The initiator methionine is absent from the purified enzyme and the amino-terminal 30 amino acids derived by automated sequence analysis are identical (arginine at position 18 was not identified) with that deduced from the nucleotide sequence. The amino acid sequence of the human enzyme shows extensive homology with that of the yeast enzyme, although the amino-terminal bifunctional dehydrogenase-cyclohydrolase domain is less homologous than the carboxyl-terminal synthetase domain. A region was identified which probably serves as a link between these two major domains of the human enzyme. The synthetase domain contains two regions that are homologous to consensus sequences for an ATP-binding site.
Prolonged response to cyclosporin-A in hypoplastic refractory anemia and correlation with in vitro studies. (2000)

About one half of hypoplastic RA patients benefited from CSA treatment. A larger study could verify whether in vitro culture of hematopoietic progenitors in the presence of CSA can predict the clinical response and whether this treatment could prolong patients' survival.
Estrogen Signaling Multiple Pathways to Impact Gene Transcription (2006)

Steroid hormones exert profound effects on cell growth, development, differentiation, and homeostasis. Their effects are mediated through specific intracellular steroid receptors that act via multiple mechanisms. Among others, the action mechanism starting upon 17beta-estradiol (E2) binds to its receptors (ER) is considered a paradigmatic example of how steroid hormones function. Ligand-activated ER dimerizes and translocates in the nucleus where it recognizes specific hormone response elements located in or near promoter DNA regions of target genes. Behind the classical genomic mechanism shared with other steroid hormones, E2 also modulates gene expression by a second indirect mechanism that involves the interaction of ER with other transcription factors which, in turn, bind their cognate DNA elements. In this case, ER modulates the activities of transcription factors such as the activator protein (AP)-1, nuclear factor-kappaB (NF-kappaB) and stimulating protein-1 (Sp-1), by stabilizing DNA-protein complexes and/or recruiting co-activators. In addition, E2 binding to ER may also exert rapid actions that start with the activation of a variety of signal transduction pathways (e.g. ERK/MAPK, p38/MAPK, PI3K/AKT, PLC/PKC). The debate about the contribution of different ER-mediated signaling pathways to coordinate the expression of specific sets of genes is still open. This review will focus on the recent knowledge about the mechanism by which ERs regulate the expression of target genes and the emerging field of integration of membrane and nuclear receptor signaling, giving examples of the ways by which the genomic and non-genomic actions of ERs on target genes converge.
Prognostic Factors Related to Clinical Response in Patients with Metastatic Melanoma Treated by CTL-Associated Antigen-4 Blockade (2007)

In patients with metastatic melanoma, ipilimumab can induce durable objective clinical responses, which are related to the induction of IRAEs.
Sequences and expression of pyruvate dehydrogenase genes from Pseudomonas aeruginosa (1997)

A mutant of Pseudomonas aeruginosa, OT2100, which appeared to be defective in the production of the fluorescent yellow-green siderophore pyoverdine had been isolated previously following transposon mutagenesis (T. R. Merriman and I. L. Lamont, Gene 126:17-23, 1993). DNA from either side of the transposon insertion site was cloned, and the sequence was determined. The mutated gene had strong identity with the dihydrolipoamide acetyltransferase (E2) components of pyruvate dehydrogenase (PDH) from other bacterial species. Enzyme assays revealed that the mutant was defective in the E2 subunit of PDH, preventing assembly of a functional complex. PDH activity in OT2100 cell extracts was restored when extract from an E1 mutant was added. On the basis of this evidence, OT2100 was identified as an aceB or E2 mutant. A second gene, aceA, which is likely to encode the E1 component of PDH, was identified upstream from aceB. Transcriptional analysis revealed that aceA and aceB are expressed as a 5-kb polycistronic transcript from a promoter upstream of aceA. An intergenic region of 146 bp was located between aceA and aceB, and a 2-kb aceB transcript that originated from a promoter in the intergenic region was identified. DNA fragments upstream of aceA and aceB were shown to have promoter activities in P. aeruginosa, although only the aceA promoter was active in Escherichia coli. It is likely that the apparent pyoverdine-deficient phenotype of mutant OT2100 is a consequence of acidification of the growth medium due to accumulation of pyruvic acid in the absence of functional PDH.
Rendering polyureas melt processible (2011)

Abstract Because of the presence of extensive H‐bonding in the hard segments, polyureas are processed by solution techniques (e.g., dry spinning) by the use of relatively costly and environmentally unfriendly solvents. Thus, the objective of this research was to render polyureas melt processible, (i.e., to reduce their flow temperature, T flow ) without compromising their excellent mechanical properties. We hypothesized and herein demonstrate that by using conventional chain extenders (CEs) in combination with small amounts of H‐bond acceptor chain extenders (HACEs), the T flow of polyureas can be significantly reduced from ∼230 to ∼180 °C, and thus melt processible products with excellent mechanical properties can be obtained. We document the synthesis of conventional polytetramethylene oxide‐based and novel polyisobutylene (PIB)‐based polyureas with T flow s ∼ 180 °C and excellent mechanicals by the addition of few percents of commercially available HACEs. Products were characterized by various techniques, including Instron (tensile strengths, elongations), durometer (Shore A Hardness), dynamic mechanical thermal analysis ( T flow ), and thermal gravimetric analysis (TGA) (thermal weight loss). According to TGA, a polyurea with T flow of ∼180 °C did not degrade up to ∼234 °C in air. A micromorphology for melt processible polyureas is proposed that emphasizes flexibilized hard segments in the presence of HACEs. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2011
In Pursuit of Carbohydrate‐Based HIV Vaccines, Part 1: The Total Synthesis of Hybrid‐Type gp120 Fragments (2004)

Key features in the successful synthesis of hybrid-type gp-120 fragments (see picture) include β-mannosylations to construct the core trisaccharide and a fragment-coupling strategy to install the “upper” high-mannose domain. Supporting information for this article is available on the WWW under http://www.wiley-vch.de/contents/jc_2002/2004/z53625_s.pdf or from the author. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
Stereochemical transcription via the intramolecular Diels-Alder reaction. Enantioselective synthesis of the nucleus of (+)-pillaromycinone (1986)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTStereochemical transcription via the intramolecular Diels-Alder reaction. Enantioselective synthesis of the nucleus of (+)-pillaromycinoneJames D. White, Ernest G. Nolen Jr., and Craig H. MillerCite this: J. Org. Chem. 1986, 51, 7, 1150–1152Publication Date (Print):April 1, 1986Publication History Published online1 May 2002Published inissue 1 April 1986https://pubs.acs.org/doi/10.1021/jo00357a047https://doi.org/10.1021/jo00357a047research-articleACS PublicationsRequest reuse permissionsArticle Views421Altmetric-Citations38LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information Get e-Alerts
Mutagenesis at a specific position in a DNA sequence. (1978)

Predefined changes in a known DNA sequence were introduced by a general method. Oligodeoxyribonucleotides complementary to positions 582 to 593 of the viral DNA strand of the bacteriophage phiX174 am3 mutant (pGTATCCTACAAA), and to the wild type sequence in this region (pGTATCCTACAAA), were synthesized and used as specific mutagens. Each of these oligonucleotides was incorporated into a complete circular complementary strand when used as primer on a genetically heterologous viral strand template, by the combined action of subtilisin-treated Escherichia coli DNA polymerase I and T4 DNA ligase. Incomplete duplexes were removed or were inactivated by nuclease S1 and the products were used to transfect spheroplasts of E. coli. Both oligonucleotides induced specific mutations at high efficiency when used with heterologous template (15% mutants among progeny phage). The am phages isolated by this procedure are phenotypically gene E mutants, and contain A at position 587 of the viral strand. They thus appear identical with am3 and provide evidence that the change G leads to A at position 587 is sufficient to produce a defective E function. Since the template for the induction of am mutants carried another genetic marker (sB1), the strains carrying the induced mutations have the new genotype am3 sB1. It should be possible to introduce the am3 mutation into any known mutant strain of phi174 using this same oligonucleotide. Both possible transition mutations were induced in these experiments. In principle, the method could also induce transversions, insertions, and deletions. The method should be applicable to other circular DNAs of similar size, for example recombinant DNA plasmids.
<title>Improving x-ray image resolution using subpixel shifts of the detector</title> (1999)

The resolution of digitized images is linked to the detector array pixel size. Aliasing effects result from a non- adequation between the detector sampling and the signal bandwidths. The aim of this study is to develop a super- resolution algorithm for X-ray images. Our technique uses controlled horizontal and vertical subpixel shifts. Generalized sampling theorem of Papoulis, based on a multichannel approach, is the theoretical justification for the recovery of a high resolution image thanks to a set of low resolution ones. A higher resolution image is recovered by a minimization of a quadratic criterion. An iterative relaxation method is used to compute the minimum. To regularize, a priori data about the signal are introduced in order to fight against noise effects. Because of the opposite effects of regularization and super-resolution an adapted regularization that preserves discontinuities has to be used. Results obtained show that our algorithm recovers high frequency components on X-ray images without noise amplification. An analysis of real acquisitions in terms of modulation transfer function (MTF) shows that we obtain, thanks to this method, a 'virtual' detector better than a low resolution one, and equivalent to a real high resolution one.
Long-Term Potentiation--A Decade of Progress? (1999)

Long-term potentiation of synaptic transmission in the hippocampus is the leading experimental model for the synaptic changes that may underlie learning and memory. This review presents a current understanding of the molecular mechanisms of this long-lasting increase in synaptic strength and describes a simple model that unifies much of the data that previously were viewed as contradictory.
Joint frequency-hopping waveform design for MIMO radar estimation using game theory (2013)

Using a colocated Multiple Input Multiple Output (MIMO) radar system, we consider the problem of joint design of amplitudes and frequency-hopping codes for frequency-hopping waveforms. First, we present the MIMO radar signal model and the sparse representation. Then, we formulate a novel game model and propose two joint design algorithms, one applying a non-cooperative scheme, and the other applying a cooperative scheme. Owing to the extremely large size of the feasible set of the discrete code, we propose to use these algorithms to obtain the ε-approximate Nash equilibrium (ε-ANE). We demonstrate the improvement of the resulting codes and amplitudes through numerical examples.
Low-temperature dopant activation and its application to polycrystalline silicon thin film transistors (1996)

Low-temperature activation of dopants in amorphous silicon films was achieved by a new method and high-performance polycrystalline silicon thin film transistors were fabricated through its application. It was found that the dopants implanted into amorphous silicon were activated simultaneously with the crystallization of amorphous silicon. With the help of a thin nickel layer, the thermal budget for dopant activation and crystallization was considerably reduced, from 600 °C (30 h) to 500 °C (5 h). Even without plasma hydrogenation, the n-channel polycrystalline silicon thin film transistors fabricated at temperatures below 500 °C showed a mobility of 120 cm2/V s, which is much higher than that of conventional devices fabricated at 600 °C.