gebhart/patrepeval huggingface dataset:
The 23 and 17 kDa Extrinsic Proteins of Photosystem II Modulate the Magnetic Properties of the S1-State Manganese Cluster (1998)

An S1-state parallel polarization "multiline" EPR signal arising from the oxygen-evolving complex has been detected in spinach (PSII) membrane and core preparations depleted of the 23 and 17 kDa extrinsic polypeptides, but retaining the 33 kDa extrinsic protein. This S1-state multiline signal, with an effective g value of 12 and at least 18 hyperfine lines, has previously been detected only in PSII preparations from the cyanobacterium sp. Synechocystis sp. PCC6803 [Campbell, K. A., Peloquin, J. M., Pham, D. P., Debus, R. J., and Britt, R. D. (1998) J. Am. Chem. Soc. 120, 447-448]. It is absent in PSII spinach membrane and core preparations that either fully retain or completely lack the 33, 23, and 17 kDa extrinsic proteins. The S1-state multiline signal detected in spinach PSII cores and membranes has the same effective g value and hyperfine spacing as the signal detected in Synechocystis PSII particles. This signal provides direct evidence for the influence of the extrinsic PSII proteins on the magnetic properties of the Mn cluster.
Teaching the photon gas in introductory physics (2002)

The ideal gas is often the only thermodynamic system for which equations of state are studied in introductory physics. The photon gas can be a rich supplement to the ideal gas, and a vehicle for introducing 20th century physics concepts.
Ubiquitin binding by a variant Jab1/MPN domain in the essential pre-mRNA splicing factor Prp8p (2006)

The U1, U2, U4/U6, and U5 small nuclear ribonucleoproteins (snRNPs) are components of the spliceosome, which catalyzes pre-mRNA splicing. One of the largest and the most highly conserved proteins in the spliceosome is Prp8p, a component of the U5 snRNP. Despite its size and conservation, very few motifs have been identified that suggest specific biochemical functions. A variant of the Jab1/MPN domain found in a class of deubiquitinating enzymes is present near the C terminus of Prp8p. Ubiquitination regulates a broad range of cellular pathways, and its functions generally require ubiquitin recognition by one or more ubiquitin-binding domains (UBDs). No precise role for ubiquitin has been defined in the pre-mRNA splicing pathway, and no known UBDs have been found within splicing proteins. Here we show that a Prp8p fragment containing the Jab1/MPN domain binds directly to ubiquitin with an affinity comparable to other known UBDs. Several mutations within this domain that compromise splicing also reduce interaction of the fragment with ubiquitin-Sepharose. Our results define a new UBD and suggest functional links between ubiquitin and the pre-mRNA splicing machinery.
Fabrication of YBa2Cu3O7−y superconducting coatings by electrophoretic deposition (1989)

Coatings of YBa2Cu3O7−y were deposited by electrophoresis on Cu, Ag, polycrystalline Al2O3, and single-crystal MgO and YSZ substrates. Acetone was used as the electrophoretic vehicle and a field of 500 V/cm was applied in the deposition process. The deposited coatings were fired in air at or above 900 °C. For coatings on Ag, MgO(Ag), and YSZ(Ag) substrates, sharp superconducting transitions at ∼90 K were obtained. Intermediate layers were formed on Cu, Al2O3(Al), and YSZ(Ag) substrates as a result of interfacial reactions during firing. The interfacial reactions affected the superconducting transition and also led to the development of a preferred orientation in the coating.
Epitope Landscape in Breast and Colorectal Cancer (2008)

The finding that individual cancers contain many mutant genes not present in normal tissues has prompted considerable interest in the cancer epitope landscape. To further understand such effects, we applied in silico-based epitope prediction algorithms and high throughput post hoc analysis to identify candidate tumor antigens. Analysis of 1,152 peptides containing missense mutations previously identified in breast and colorectal cancer revealed that individual cancers accumulate on average approximately 10 and approximately 7 novel and unique HLA-A*0201 epitopes, respectively, including genes implicated in the neoplastic process. These data suggest that, with appropriate manipulation of the immune system, tumor cell destruction in situ may provide a polyvalent tumor vaccine without a requirement for knowledge of the targeted antigens.
Magneto-optic magnetic field sensors based on uniaxial iron garnet films in optical waveguide geometry (1993)

Iron garnet films which exhibit perpendicular uniaxial magnetic anisotropy are promising materials for magnetooptic magnetic field sensing. In an optical waveguide geometry, these materials exhibit large values of saturation Faraday rotation which in turn produce high sensitivity. The domain structure of these films favors magnetization rotation as the primary magnetization process. This process is significantly faster than domain wall motion, which is the primary magnetization process in bulk iron garnet crystals. Data which confirm the high sensitivity and wideband frequency response of these materials are presented. One film exhibits a virtually flat frequency response from DC to at least 1 GHz. Potential problems with waveguide sensors, such as birefringence and optical coupling efficiency appear to be soluble.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Probabilistic multimedia objects (multijects): a novel approach to video indexing and retrieval in multimedia systems (2002)

This paper proposes a novel scheme for bridging the gap between low level media features and high level semantics using a probabilistic framework. We propose a framework, in which scenes can be indexed at a semantic level. The fundamental components of the framework are sites, objects and events. Detection of presence of an instance of one of these influences the probability of the presence of instances within other classes. Detection of instances is done using probabilistic multimedia objects: multijects. Indexing using multijects can handle queries posed at semantic level. multijects are built in a Markovian framework. Two ways of building the multijects from low level features fusing features from multiple modalities are presented. A probabilistic framework is also envisioned to encode the higher level relationship between multijects, which enhances or reduces the probabilities of concurrent existence of various multijects. An actual implementation is presented by developing multijects representing the higher level concept of "explosion" and "waterfall". The models are evaluated by using the multijects to detect explosions and waterfalls in movies. Results reveal, that the multijects detect the aforementioned events with greater accuracy and are able to segment the video into scenes which have explosions and waterfalls.
Balloon angioplasty for treatment of in‐stent restenosis: feasibility, safety, and efficacy (1994)

Sixty patients with 1 or 2 stainless steel intracoronary stents (Cook, Inc.) underwent balloon angioplasty for in-stent restenosis 1.5-13.5 months after stenting. Seventy-five in-stent redilatation procedures were performed. Seventy-three restenotic lesions (97%) were successfully recrossed and dilated, reducing the mean pre-angioplasty intrastent diameter stenosis from 77 +/- 12% to 20 +/- 11% residual. Although one angioplasty (1.3%) was complicated by non-Q-wave infarction, no angioplasty-related death, acute closure, need for additional stenting, emergent coronary bypass surgery, side branch occlusion, or vascular sequelae occurred. Post-procedure heparin was not used in 83% of successful cases. Most patients were discharged the day following redilatation (mean in-hospital stay 1.7 +/- 1.3 days). At 5.4 +/- 3.4 months following in-stent angioplasty, 84% of patients were in Canadian Cardiovascular Society class 0 or I. In conclusion, balloon dilatation in this stent for restenosis appears simple and efficacious in the short term, and may entail less risk than dilatation of unprotected coronary vessels.
Stage and tissue‐specific expression of the alcohol dehydrogenase 1 (Adh‐1) gene during mouse development (1994)

The Adh-1 gene product, ADH-A2, the only known murine class I alcohol dehydrogenase, is able to oxidize retinol (vitamin A) into retinaldehyde, the first enzymatic step in the conversion of retinol into its biologically active metabolite retinoic acid. We have investigated the developmental expression pattern of Adh-1 transcripts by in situ hybridization. Transcripts were first detected by embryonic day 10.5 in the mesonephros mesenchyme. During the following gestational days, Adh-1 transcripts were detected in several mesenchymal areas, such as nasal, laterocervical, and genital regions. Adh-1 transcripts were also detected in a small ectodermal domain at the anterior margins of both forelimbs and hindlimbs. During late fetal development. Adh-1 transcripts were found essentially in the epidermis and in a number of tissues which continue to express the gene after birth, such as liver, kidney, gut epithelium, adrenal cortex, testis interstitium, and ovarian stroma. In contrast, a strong expression of Adh-1 was found in the mesenchyme of developing lungs, but not in the adult organ. This highly regulated expression of Adh-1 is discussed with respect to the local synthesis of retinoic acid during development. Although the promoter of the human counterpart of Adh-1 contains a retinoic acid response element (Duester et al. [1991] Mol. Cell. Biol. 11:1638-1646), we report that this element is not conserved in the murine gene. Consistently, Adh-1 promoter-containing reporter constructs were not retinoic acid-inducible in cotransfections assays with RARs and/or RXRs, suggesting that retinoic acid regulation of Adh-1 differs from that of the human gene.
Prophylactic and Therapeutic Effects of a Monoclonal Antibody to Tumor Necrosis Factor- in Experimental Gram-Negative Shock (1990)

A monoclonal antibody to recombinant murine tumor necrosis factor-alpha (TNF alpha), TN3-19.12, was used to explore pathogenetic mechanisms and therapeutic strategies in gram-negative shock. In mice receiving an LD90 dose of Escherichia coli O111, TN3-19.12 prevented death if given 1.5 h before or 30 min after challenge. Less protection was conferred if the antibody was given 2.5 h after challenge. In control mice receiving an irrelevant antibody, L2-3D9, TNF alpha levels rose (less than or equal to 185.1 +/- 26.1 ng/ml) by 90 min and had returned to baseline by 5 h. Mice receiving TN3-19.12 did not have this response. TN3-19.12 was of limited benefit in mice receiving Pseudomonas aeruginosa but had no protective effect in cyclophosphamide-treated mice receiving Klebsiella pneumoniae. In L2-3D9-treated mice, TNF alpha levels were elevated to 61.8 +/- 27.9 and 49.7 +/- 5.1 ng/ml by 90 min in the two models, respectively. TNF alpha levels in TN3-19.12-treated mice in these two models were very low (3.9-5.5 ng/ml). TNF alpha is a mediator in gram-negative shock; antibody to TNF alpha can be of value in prophylaxis and treatment, but its clinical use remains to be established.
Gold Nanostars For Surface-Enhanced Raman Scattering: Synthesis, Characterization and Optimization (2008)

The controlled synthesis of high-yield gold nanostars of varying sizes, their characterization and use in surface-enhanced Raman scattering (SERS) measurements are reported for the first time. Gold nanostars ranging from 45 to 116-nm in size were synthesized in high-yield, physically modeled and optically characterized using transmission and scanning electron microscopy and UV-Visible absorption spectroscopy. The nanostar characterization involved both studying morphology evolution over time and size as a function of nucleation. The nanostars properties as substrates for SERS were investigated and compared with respect to size. As the overall star size increases, so does the core size, the number of branches and branch aspect ratio; the number of branch tips per star surface area decreases with increasing size. The stars become more inhomogeneous in shape, although their yield is high and overall size remains homogeneous. Variations in star size are also accompanied by shifts of the long plasmon band in the NIR region, which hints towards tuning capabilities that may be exploited in specific SERS applications. The measured SERS enhancement factors suggest an interesting correlation between nanostar size and SERS efficiencies, and were relatively consistent across different star samples, with the enhancement factor estimated as 5×10<sup>3</sup> averaged over the 52-nm nanostars for 633-nm excitation.
Exendin-(9–39) Corrects Fasting Hypoglycemia in SUR-1–/– Mice by Lowering cAMP in Pancreatic β-Cells and Inhibiting Insulin Secretion (2008)

Congenital hyperinsulinism is a disorder of pancreatic beta-cell function characterized by failure to suppress insulin secretion in the setting of hypoglycemia, resulting in brain damage or death if untreated. Loss-of-function mutations in the K(ATP) channel (composed of two subunits: Kir6.2 and SUR-1) are responsible for the most common and severe form of congenital hyperinsulinism. Most patients are unresponsive to available medical therapy and require palliative pancreatectomy. Similar to the human condition, the SUR-1(-/-) mouse is hypoglycemic when fasted and hyperglycemic when glucose-loaded. We have previously reported that the glucagon-like peptide-1 receptor antagonist exendin-(9-39) raises fasting blood glucose in normal mice. Here we examine the effect of exendin-(9-39) on fasting blood glucose in SUR-1(-/-) mice. Mice were randomized to receive exendin-(9-39) or vehicle. Fasting blood glucose levels in SUR-1(-/-) mice treated with exendin-(9-39) were significantly higher than in vehicle-treated mice and not different from wild-type littermates. Exendin-(9-39) did not further worsen glucose tolerance and had no effect on body weight and insulin sensitivity. Isolated islet perifusion studies demonstrated that exendin-(9-39) blocked amino acid-stimulated insulin secretion, which is abnormally increased in SUR-1(-/-) islets. Furthermore, cAMP content in SUR-1(-/-) islets was reduced by exendin-(9-39) both basally and when stimulated by amino acids, whereas cytosolic calcium levels were not affected. These findings suggest that cAMP plays a key role in K(ATP)-independent insulin secretion and that the GLP-1 receptor is constitutively active in SUR-1(-/-) beta-cells. Our findings indicate that exendin-(9-39) normalizes fasting hypoglycemia in SUR-1(-/-) mice via a direct effect on insulin secretion, thereby raising exendin-(9-39) as a potential therapeutic agent for K(ATP) hyperinsulinism.
Brown adipose tissue in patients with phaeochromocytoma. (1986)

Intra-abdominal adipose tissue was obtained at laparotomy from three subjects with high circulating noradrenaline concentrations in the presence of phaeochromocytoma. Light and electron microscopy confirmed typical brown adipose tissue, both adjacent to, and in one case distant from, the tumour. Biochemically, in terms of high cytochrome-C oxidase activity, mitochondrial GDP-binding, GDP-inhibitable uncoupled mitochondrial respiration, and specific concentration of uncoupling protein (mean 31 +/- 7 micrograms/mg mitochondrial protein) the tissue possessed all the unique features of thermogenically active brown adipose tissue. These findings are contrasted with low results obtained from a case with Cushing's disease, and the significantly lower results (mean 2.5 +/- 1.8 micrograms/mg) in a group of control adults (P less than 0.02). In the presence of high circulating noradrenaline concentrations, the intra-abdominal fat of human adults, including the omental fat, which is brown adipose tissue in infancy, becomes reactivated and may be contributing to the weight loss which is typically seen with phaeochromocytoma. Human adult brown adipose tissue thus has the biochemical potential for the thermogenic activity required in order to contribute to the regulation of energy balance and body weight.
Physical gelation of a multiblock copolymer: effect of copolymer composition (1988)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTPhysical gelation of a multiblock copolymer: effect of copolymer compositionXiongwei He, Jean Herz, and Jean Michel GuenetCite this: Macromolecules 1988, 21, 6, 1757–1763Publication Date (Print):June 1, 1988Publication History Published online1 May 2002Published inissue 1 June 1988https://pubs.acs.org/doi/10.1021/ma00184a038https://doi.org/10.1021/ma00184a038research-articleACS PublicationsRequest reuse permissionsArticle Views80Altmetric-Citations14LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Flexible and Hydrophobic Zn-Based Metal–Organic Framework (2011)

A zinc-based metal-organic framework Zn(2)(adb)(2)(dabco)·4.5 DMF (K) (DUT-30(Zn), DUT = Dresden University of Technology, adb = 9,10-anthracene dibenzoate, dabco =1,4-diazabicyclo[2.2.2]octane, DMF = N,N-dimethylformamide) was synthesized using a solvothermal route. This MOF exhibits six crystallographic guest dependent phases. Two of them were characterized via single crystal X-ray analysis. The as-synthesized phase K crystallizes in the orthorhombic space group Fmmm, with a = 9.6349(9), b = 26.235(3), and c = 28.821(4) Å and consists of two interpenetrated pillar-layer networks with pcu topology. When the substance loses 0.5 DMF molecules per formula unit, a phase transition from the kinetic phase K to a thermodynamic phase T occurs. Zn(2)(adb)(2)(dabco)·4 DMF (T) crystallizes in the tetragonal space group I4/mmm, with a = 19.5316(8) and c = 9.6779(3) Å. During the evacuation the DUT-30(Zn) undergoes again the structural transformation to A. The activated compound A shows the gate pressure effect in the low pressure region of nitrogen physisorption isotherm and has a BET surface area of 960 m(2 )g(-1) and a specific pore volume of 0.43 cm(3) g(-1). Furthermore, DUT-30(Zn) exhibits a hydrogen storage capacity of 1.12 wt % at 1 bar, a CO(2) uptake of 200 cm(3) g(-1) at -78 °C and 0.9 bar, and a n-butane uptake of 3.0 mmol·g(-1) at 20 °C. The N(2) adsorption process was monitored in situ via X-ray powder diffraction using synchrotron radiation. A low temperature induced transformation of phase A to phase V could be observed if the compound was cooled under vacuum to -196 °C. A further crystalline phase N could be identified if the framework was filled with nitrogen at -196 °C. Additionally, the treatment of activated phase A with water leads to the new phase W.
Sertraline in the Prevention of Depression (1992)

A group of 480 patients, aged 19-78 with an HRSD score of at least 17 and who met DSM-III criteria for major depressive disorder were studied. Patients were given placebo for a one-week single-blind run-in period, after which sertraline was administered for eight weeks. This was followed by 44 weeks in which patients received sertraline or placebo on a double-blind, randomised basis. Patients were assessed periodically using the 17-item HRSD and the Clinical Global Impression scales. During the entire double-blind period 24 (13.0%) sertraline patients relapsed compared with 48 (45.7%) placebo patients (P less than 0.001). The protective effect of sertraline was maintained throughout the 44 weeks. The study provides evidence that sertraline prevents relapse of the index episode of depression as well as recurrence of further episodes and has few side-effects.
Genome Duplications and Accelerated Evolution ofHoxGenes and Cluster Architecture in Teleost Fishes (2001)

The early origin of four vertebrate Hox gene clusters during the evolution of gnathostomes was likely caused by two consecutive duplications of the entire genome and the subsequent loss of individual genes. The presumed conserved and important roles of these genes in tetrapods during development led to the general assumption that Hox cluster architecture had remained unchanged since the last common ancestor of all jawed vertebrates. But recent data from teleost fishes reveals that this is not the case. Here, we present an analysis of the evolution of vertebrate Hox genes and clusters, with emphasis on the differences between the Hox A clusters of fish (actinopterygian) and tetrapod (sarcopterygian) lineages. In contrast to the general conservation of genomic architecture and gene sequence observed in sarcopterygians, the evolutionary history of actinopterygian Hox clusters likely includes an additional (third) genome duplication that initially increased the number of clusters from four to eight. We document, for the first time, higher rates of gene loss and gene sequence evolution in the Hox genes of fishes compared to those of land vertebrates. These two observations might suggest that two different molecular evolutionary strategies exist in the two major vertebrate lineages. Preliminary data from the African cichlid fish Oreochromis niloticus compared to those of the pufferfish and zebrafish reveal important differences in Hox cluster architecture among fishes and, together with genetic mapping data from Medaka, indicate that the third genome duplication was not zebrafish-specific, but probably occurred early in the history of fishes. Each descending fish lineage that has been characterized so far, distinctively modified its Hox cluster architecture through independent secondary losses. This variation is related to the large body plan differences observed among fishes, such as the loss of entire sets of appendages and ribs in some lineages.