gebhart/patrepeval huggingface dataset:
Design considerations and quantitative assessment for the development of percutaneous mitral valve stent (2014)

Percutaneous heart valve replacement is gaining popularity, as more positive reports of satisfactory early clinical experiences are published. However this technique is mostly used for the replacement of pulmonary and aortic valves and less often for the repair and replacement of atrioventricular valves mainly due to their anatomical complexity. While the challenges posed by the complexity of the mitral annulus anatomy cannot be mitigated, it is possible to design mitral stents that could offer good anchorage and support to the valve prosthesis. This paper describes four new Nitinol based mitral valve designs with specific features intended to address migration and paravalvular leaks associated with mitral valve designs. The paper also describes maximum possible crimpability assessment of these mitral stent designs using a crimpability index formulation based on the various stent design parameters. The actual crimpability of the designs was further evaluated using finite element analysis (FEA). Furthermore, fatigue modeling and analysis was also done on these designs. One of the models was then coated with polytetrafluoroethylene (PTFE) with leaflets sutured and put to: (i) leaflet functional tests to check for proper coaptation of the leaflet and regurgitation leakages on a phantom model and (ii) anchorage test where the stented valve was deployed in an explanted pig heart. Simulations results showed that all the stents designs could be crimped to 18F without mechanical failure. Leaflet functional test results showed that the valve leaflets in the fabricated stented valve coapted properly and the regurgitation leakage being within acceptable limits. Deployment of the stented valve in the explanted heart showed that it anchors well in the mitral annulus. Based on these promising results of the one design tested, the other stent models proposed here were also considered to be promising for percutaneous replacement of mitral valves for the treatment of mitral regurgitation, by virtue of their key features as well as effective crimping. These models will be fabricated and put to all the aforementioned tests before being taken for animal trials.
Identification of senescent cell surface targetable protein DPP4 (2017)

Senescent cell accumulation in aging tissues is linked to age-associated diseases and declining function, prompting efforts to eliminate them. Mass spectrometry analysis revealed that DPP4 (dipeptidyl peptidase 4) was selectively expressed on the surface of senescent, but not proliferating, human diploid fibroblasts. Importantly, the differential presence of DPP4 allowed flow cytometry-mediated isolation of senescent cells using anti-DPP4 antibodies. Moreover, antibody-dependent cell-mediated cytotoxicity (ADCC) assays revealed that the cell surface DPP4 preferentially sensitized senescent, but not dividing, fibroblasts to cytotoxicity by natural killer cells. In sum, the selective expression of DPP4 on the surface of senescent cells enables their preferential elimination.
Adaptive runlength coding (2003)

Runlength coding is the standard coding technique for block transform based image/video compression. A block of quantized transform coefficients is first represented as a sequence of RUN (number of consecutive zeros) / LEVEL (the value of the following nonzero coefficient) pairs which are then entropy coded. We point out in this paper the inefficiency of conventional runlength coding and introduce a novel adaptive runlength coding scheme that encodes RUN and LEVEL symbols separately using context based adaptive binary arithmetic coding. We aim to maximize compression efficiency by adaptively exploiting the characteristics of block transform coefficients and the dependency between RUN and LEVEL. Coding results show that, with the same level of complexity, the proposed adaptive runlength coding algorithm outperforms the conventional runlength coding scheme by a wide margin in the rate-distortion (R-D) sense.
Mechanics of the respiratory system and breathing pattern during sleep in normal humans (1984)

The purposes of this investigation were to describe the changes in 1) dynamic compliance of the lungs, 2) airflow resistance, and 3) breathing pattern that occur during sleep in normal adult humans. Six subjects wore a tightly fitting face mask. Flow and volume were obtained from a pneumotachograph attached to the face mask. Transpulmonary pressure was calculated as the difference between esophageal pressure obtained with a balloon and mask pressure. At least 20 consecutive breaths were analyzed for dynamic compliance, airflow resistance, and breathing pattern during wakefulness, non-rapid-eye-movement stage 2 and rapid-eye-movement (REM) sleep. Dynamic compliance did not change significantly. Airflow resistance increased during sleep; resistance was 3.93 +/- 0.56 cmH2O X 1-1 X s during wakefulness, 7.96 +/- 0.95 in stage 2 sleep, and 8.66 +/- 1.43 in REM sleep (P less than 0.02). By placing a catheter in the retroepiglottic space and thus dividing the airway into upper and lower zones, we found the increase in resistance occurred almost entirely above the larynx. Decreases in tidal volume, minute ventilation, and mean inspiratory flow observed during sleep were not statistically significant.
Human SRF-related proteins: DNA-binding properties and potential regulatory targets. (1991)

Serum response factor (SRF) is a transcription factor that binds the sequence CC(A/T)6GG found in a number of growth factor-inducible and muscle-specific promoters. We describe the isolation and characterization of cDNA clones encoding a family of three human SRF-related DNA-binding proteins. Each of these RSRF (related to SRF) proteins contains an 86-amino-acid amino-terminal region related to the SRF DNA-binding domain: In RSRFC4 and RSRFC9, this region is identical, whereas that present in RSRFR2 differs by seven conservative amino acid substitutions. The DNA-binding specificity of the RSRF proteins, which recognize the consensus sequence CTA(A/T)4TAG, is distinct from that of SRF. The entire RSRF common region is required for DNA binding, and the differential sequence specificity of the RSRFs and SRF is the result of differences in the basic amino-terminal part of this domain. The RSRF proteins bind DNA as dimers and can dimerize with one another but not with SRF. Although the RSRF mRNAs are expressed in many cell types, RSRFR2 mRNA is expressed at elevated levels in several B-cell lines. Consistent with this, extracts from many cell types form CTA(A/T)4TAG-binding complexes that contain RSRF proteins, and oligonucleotides containing RSRF-binding sites function as promoter elements in transfection assays. Like SRF-binding sites, RSRF-binding sites are found in the regulatory sequences of a number of growth factor-inducible and muscle-specific genes, and we show that RSRF polypeptides are components of previously characterized binding activities that interact with these elements. We discuss the potential role of RSRF proteins in the regulation of these genes.
Complete sequence of the gltA gene encoding citrate synthase in Escherichia coli (1983)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTComplete sequence of the gltA gene encoding citrate synthase in Escherichia coliSarbjit S. Ner, Vipin Bhayana, Alexander W. Bell, Ian G. Giles, Harry W. Duckworth, and David P. BloxhamCite this: Biochemistry 1983, 22, 23, 5243–5249Publication Date (Print):November 8, 1983Publication History Published online1 May 2002Published inissue 8 November 1983https://pubs.acs.org/doi/10.1021/bi00292a001https://doi.org/10.1021/bi00292a001research-articleACS PublicationsRequest reuse permissionsArticle Views180Altmetric-Citations40LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Programming Reversibly Self‐Folding Origami with Micropatterned Photo‐Crosslinkable Polymer Trilayers (2014)

Self-folding microscale origami patterns are demonstrated in polymer films with control over mountain/valley assignments and fold angles using trilayers of photo-crosslinkable copolymers with a temperature-sensitive hydrogel as the middle layer. The characteristic size scale of the folds W = 30 μm and figure of merit A/ W (2) ≈ 5000, demonstrated here represent substantial advances in the fabrication of self-folding origami.
Cyclophilin inhibitors in hepatitis C viral infection (2007)

Cyclophilins (Cyps) are proteins that are ubiquitously present with peptidyl-prolyl cis-trans isomerase activity and play an important role in de novo protein folding and in isomerization of native proteins in several cellular systems. There is growing evidence that indicates CypB is a positive modulator of the HCV RNA-dependent RNA polymerase in the replication complex. Early in vitro and animal data with selective Cyp inhibitors show a potent anti-HCV effect. This anti-HCV effect was confirmed in the first patient study with the selective Cyp inhibitor Debio-025. Preclinical data suggest that Cyp inhibitors may present a higher barrier to the selection of resistance than protease and polymerase inhibitors and that a combination of Cyp inhibitors with either of these drugs or interferon results in additive or synergistic anti-HCV activity. By interfering at the level of host-viral interaction, Cyp inhibition may open the way for a novel approach to anti-HCV treatment that could be complementary, not only to interferon-based treatment, but also to future treatments that directly target HCV replication enzymes such as protease and polymerase inhibitors.
(+)-(S)-Alapyridaine--A General Taste Enhancer? (2003)

N-(1-Carboxyethyl)-6-hydroxymethyl-pyridinium-3-ol inner salt (alapyridaine), recently identified in heated sugar/amino acid mixtures as well as in beef bouillon, has been shown to exhibit general taste-enhancing activities, although tasteless on its own. Differing from other taste enhancers reported so far, racemic (R/S)-alapyridaine and, to an even greater extent (+)-(S)-alapyridaine, the physiologically active enantiomer, are able to enhance more than one basic taste quality. The threshold concentrations for the sweet taste of glucose and sucrose, for the umami taste of monosodium L-glutamate (MSG) and guanosine-5'-monophosphate (GMP), as well as the salty taste of NaCl, were significantly decreased when alapyridaine was present. In contrast, perception of the bitter tastes of caffeine and L-phenylalanine, as well as of sour-tasting citric acid, was unaffected. Furthermore, alapyridaine was shown to intensify known taste synergies such as, for example, the enhancing effect of L-arginine on the salty taste of NaCl, as well as that of GMP on the umami taste of MSG. The activity of (+)-(S)-alapyridaine could be observed not only in solutions of single taste compounds, but also in more complex tastant mixtures; for example, the umami, sweet and salty taste of a solution containing MSG, sucrose, NaCl and caffeine was significantly modulated, thus indicating that alapyridaine is a general taste enhancer.
Clinical and laboratory features of 78 cases of T-prolymphocytic leukemia (1991)

We describe the clinical and laboratory findings of 78 adult patients with T-prolymphocytic leukemia (T-PLL) studied over the last 12 years. The main disease features were splenomegaly (73%), lymphadenopathy (53%), hepatomegaly (40%), skin lesions (27%), and a high leukocyte count (greater than 100 x 10(9)/L in 75%) with nucleolated prolymphocytes. A variant form with small, less typical cells was recognized in 19%. Membrane markers defined a postthymic phenotype TdT- , CD2+, CD3+, CD5+, CD7+; in 65%, the cells were CD4+ CD8-, in 21%, they coexpressed CD4 and CD8, and, in 13%, they were CD4- CD8+. Serology for human T-cell leukemia/lymphoma virus Type-I (HTLV-I) was negative in the 27 cases investigated. Cytogenetic analysis in 30 cases showed a consistent abnormality of chromosome 14, usually inv (14), with breakpoints at q11 and q32 in 76% of cases. Trisomy 8, including iso8q, was shown in 53%; t (11;14)(q13;q32) was documented in one case; and one had a normal karyotype. The clinical course was progressive with a median survival of 7.5 months. Thirty-one patients were treated with 2′ deoxycoformycin and 15 responded (3 complete remissions and 12 partial remissions); the response rate (48%) increased to 58% in patients with a CD4+ CD8- phenotype. The median survival of responders was 16 months and of nonresponders 10 months; other treatments were less effective. T-PLL is a distinct clinico-pathologic entity with aggressive course and characteristic chromosome abnormalities. A subgroup of patients may benefit from deoxycoformycin.
Towards high performance two-dimensional gel electrophoresis using ultrazoom gels (2000)

Proteomics is the analysis of protein expression in cells or tissues, e.g., to study cellular processes at the molecular level. Ultimately, a proteome analysis should encompass most if not all protein species in a biological sample, including those present in low copy numbers. We are developing two-dimensional gel electrophoresis technology by applying narrow pH range ultrazoom gels to enhance resolution and to improve the detection of low abundance proteins. Ultrazoom gels in the acidic pH range allow the detection of proteins down to 300 copies per cell of a B-lymphoma cell line. Protein separation in the alkaline pH range, however, still requires optimization, especially in conjunction with high sample loads.
Mobile Surface Reflectometry (2015)

Abstract We present two novel mobile reflectometry approaches for acquiring detailed spatially varying isotropic surface reflectance and mesostructure of a planar material sample using commodity mobile devices. The first approach relies on the integrated camera and flash pair present on typical mobile devices to support free‐form handheld acquisition of spatially varying rough specular material samples. The second approach, suited for highly specular samples, uses the LCD panel to illuminate the sample with polarized second‐order gradient illumination. To address the limited overlap of the front facing camera's view and the LCD illumination (and thus limited sample size), we propose a novel appearance transfer method that combines controlled reflectance measurement of a small exemplar section with uncontrolled reflectance measurements of the full sample under natural lighting. Finally, we introduce a novel surface detail enhancement method that adds fine scale surface mesostructure from close‐up observations under uncontrolled natural lighting. We demonstrate the accuracy and versatility of the proposed mobile reflectometry methods on a wide variety of spatially varying materials.
Pixelated chemically amplified resists: Investigation of material structure on the spatial distribution of photoacids and line edge roughness (2007)

Preorganized pixel-forming photoresists were prepared to investigate the effect of well-defined material structures and the spatial distribution of photoacid on line edge roughness of chemically amplified photoresists. Asymmetric poly(styrene)-block-poly(t-butylacrylate) (PS-b-PtBA) diblock copolymers, which formed PS cylinders or spheres within a PtBA matrix, were used as photoresists by adding catalytic amounts of photoacid generators (PAGs). PAGs resided only in the PtBA matrix domain, resulting in the PAG chemistry occurring only in the matrix domain. The pixelated photoresists showed a significant solubility switch after UV or x-ray exposure and postexposure bake, such that the polymer in the exposed regions dissolved in aqueous base solution. Granular structures that were matched with the domain spacing and structure of the block copolymer photoresists were observed on the edge of the patterned features. This model system demonstrated that line edge roughness is directly correlated to the structure of pixelated photoresist materials.
Théorie quantique des courants interatomiques dans les combinaisons aromatiques (1937)

Nous exposons ici une théorie quantique de l'anisotropie diamagnétique anomale, observée dans les combinaisons aromatiques. Elle s'explique par un mécanisme de courants interatomiques particulier à ces combinaisons Nous montrons pourquoi ces courants ne peuvent se manifester ni à l'intérieur des combinaisons saturées, même cycliques, ni entre des arrangements moléculaires saturés. Nous traitons comme exemples le benzène, le naphtalène, l'anthracène, le diphényle, le pyrène et le phénanthrène.
Enabling Technologies for Cultured Neural Networks (1994)

Enabling Technologies for Cultured Neural Networks is the first integrated compilation of recent technological advances relevant to the control and study of mammalian neurons in vitro, providing extensive coverage of the design, fabrication, and use of integrated microelectronic devices in neurobiology. Topics addressed include the isolation and controlled survival, growth, and physiology of cultured mammalian neurons, including geometric growth of neurons; improved, noninvasive neuronal stimulation and recording methods, including advanced microelectrode and optical techniques; and theoretical and experimental frameworks for modeling and analyzing data. This text will prove important to neuron culture students and researchers; to neuroscientists seeking new information on techniques applicable to preparations other than cultured neurons; to chemists interested in biological interfaces; and to biomedical engineers interested in the interdisciplinary nature of the field.
Self-Assembled Monolayers on Polymer Surfaces:  Kinetics, Functionalization, and Photopatterning (1999)

Monolayers of bifunctional bolaamphiphiles were self-assembled on a polymeric substrate (spin-coated film of poly(allylamine hydrochloride)). Various features of the novel bifunctional, well-ordered, and relatively stiff monolayer and the subsequent reactions of the exposed benzoyl azide groups were investigated. The characterization of the monolayers and the kinetics of self-assembly was determined via reflection−absorption infrared spectroscopy and ellipsometry. Atomic force microscopy and ellipsometry were used to measure roughness and thickness, respectively. From molecular modeling and ellipsometry, the bolaaphiphiles in the monolayers were found to be inclined at an angle of about 68° to the normal. In addition, the monomolecular layers appeared to be fairly crystalline. Serial functionalization of the exposed benzoyl azide groups with dansyl-cadaverine in the liquid phase followed by propylamine in the gas phase illustrated a stable, dense, well-ordered, two-dimensional monomolecular layer of bolaamphiphiles. Photopatterning, via UV irradiation of exposed benzoyl azide groups, was also demonstrated. The novelty of the surface modification procedure described here is the extraordinary ease with which self-assembly took place and the stability of the resulting monolayers which formed a highly reactive new surface suitable for further modification. Arranging molecules in a tidy ordered array on a polymeric surface is a main result of this work.
Aporphines. 11. Synthesis and dopaminergic activity of monohydroxyaporphines. Total synthesis of (+-)-11-hydroxyaporphine, (+-)-11-hydroxynoraporphine, and (+-)-11-hydroxy-N-propylnoraporphine (1974)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTAporphines. 11. Synthesis and dopaminergic activity of monohydroxyaporphines. Total synthesis of (+-)-11-hydroxyaporphine, (+-)-11-hydroxynoraporphine, and (+-)-11-hydroxy-N-propylnoraporphineJohn L. Neumeyer, Felix E. Granchelli, K. Fuxe, U. Ungerstedt, and H. CorrodiCite this: J. Med. Chem. 1974, 17, 10, 1090–1095Publication Date (Print):October 1, 1974Publication History Published online1 May 2002Published inissue 1 October 1974https://pubs.acs.org/doi/10.1021/jm00256a014https://doi.org/10.1021/jm00256a014research-articleACS PublicationsRequest reuse permissionsArticle Views178Altmetric-Citations38LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
ChemInform Abstract: Rate Acceleration of Fischer‐Indole Cyclization by Microwave Irradiation. (1996)

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
Introduction of sacral neuromodulation for the treatment of faecal incontinence. (2013)

Early results are encouraging, with a significant improvement in faecal incontinence following SNM. The results in Auckland in terms of improvement in symptom severity and quality of life are significant and comparable to other centres. SNM offers a good alternative for patients with end-stage FI.
Elastin Turnover in the Rat Uterus (1985)

During pregnancy the rat uterus shows a steady increase in total elastin content, reaching levels of 300% above non-pregnant controls. Elevated levels of urinary desmosine are also seen during this period. After parturition there is a slight lag period and then rapid removal of elastin from the uterus, reaching baseline after five days. Urinary desmosine levels were elevated for about seven days post partum before returning toward control levels. Analysis of pre- and post-partum serum showed no significant differences. The involuting rat uterus appears to be an excellent model for the study of processes involved in elastin catabolism.