gebhart/patrepeval huggingface dataset:
Phase I Trial of Yttrium-90—Labeled Anti—Prostate-Specific Membrane Antigen Monoclonal Antibody J591 for Androgen-Independent Prostate Cancer (2004)

Purpose To determine the maximum-tolerated dose (MTD), toxicity, human antihuman antibody (HAHA) response, pharmacokinetics, organ dosimetry, targeting, and preliminary efficacy of yttrium-90–labeled anti–prostate-specific membrane antigen monoclonal antibody J591 ( 90 Y-J591) in patients with androgen-independent prostate cancer (PC). Patients and Methods Patients with androgen-independent PC and evidence of disease progression received indium-111–J591 for pharmacokinetic and biodistribution determinations followed 1 week later by 90 Y-J591 at five dose levels: 5, 10, 15, 17.5, and 20 mCi/m 2 . Patients were eligible for up to three re-treatments if platelet and neutrophil recovery was satisfactory. Results Twenty-nine patients with androgen-independent PC received 90 Y-J591, four of whom were re-treated. Dose limiting toxicity (DLT) was seen at 20 mCi/m 2 , with two patients experiencing thrombocytopenia with non–life-threatening bleeding episodes requiring platelet transfusions. The 17.5-mCi/m 2 dose level was determined to be the MTD. No re-treated patients experienced DLT. Nonhematologic toxicity was not dose limiting. Targeting of known sites of bone and soft tissue metastases was seen in the majority of patients. No HAHA response was seen. Antitumor activity was seen, with two patients experiencing 85% and 70% declines in prostate-specific antigen (PSA) levels lasting 8 and 8.6 months, respectively, before returning to baseline. Both patients had objective measurable disease responses. An additional six patients (21%) experienced PSA stabilization. Conclusion The recommended dose for 90 Y-J591 is 17.5 mCi/m 2 . Acceptable toxicity, excellent targeting of known sites of PC metastases, and biologic activity in patients with androgen-independent PC warrant further investigation of 90 Y-J591 in the treatment of patients with PC.
Changes in Lymphocyte Subsets and Cytokines During European Porcine Reproductive and Respiratory Syndrome: Increased Expression of IL-12 and IL-10 and Proliferation of CD4 − CD8 high (2009)

The changes in peripheral blood mononuclear cells (PBMCs) have been studied in several reports in an attempt to determine the immune response against porcine reproductive and respiratory syndrome virus (PRRSV) infection. However, how these changes are evoked after PRRSV infection has not yet been clarified. The aim of this study was to analyze the changes seen in lymphocyte subsets and immunomodulatory cytokine expression in pigs after an acute experimental infection with a European PRRSV field isolate. Pigs were inoculated intramuscularly with PRRSV field isolate 2982. Samples from blood, medial retropharyngeal and tracheobronchial lymph nodes, and spleen were collected at different time points for flow cytometry studies and for cytokine expression by ELISA. CD21(+) cell counts increased in PBMCs and tracheobronchial lymph node cells from 17 to 24 dpi, coinciding with an increase in PRRSV-specific antibody titer in blood. CD3(+) T-cell counts increased mainly due to an enhancement of CD4(-)CD8(high) and CD4(+)CD8(+) T cells. CD4(-)CD8(low) T cells were decreased in all organs studied, whereas CD4(+)CD8(-) T cells decreased only in the spleen. The drop in viremia correlated with an enhancement of CD4(-)CD8(high) T cells, and with a higher expression of interleukin-10 (IL-10) and interleukin-12 p40 (IL-12 p40). No efficient interferon-gamma (IFN-gamma) response was detected during the acute phase of the infection, and the expression of interferon-alpha (IFN-alpha) was late and reached its maximum expression once the viremia decreased. These results point to IL-10 and IL-12 as cytokines that might play a significant role in the PRRSV immune response, as may CD4(-)CD8(high) T cells.
Volume rendering in clinical practice. a pictorial review. (2003)

Several post-processing techniques are currently available to the radiologist to optimize the review of the scan data acquired by multidetector CT. This is sometimes necessary as, when reviewing a volumetric data acquisition only as transaxial CT images, all the gathered information is not always displayed. Among all the current available post-processing possibilities, volume rendering is one of the most powerful techniques due to its various parameters and powerful segmentation capabilities. It is nevertheless the most complex technique, requiring a higher degree of training and experience from the radiologist to generate the desired result. Aim of this paper is to present the reader a pictorial review of the usefulness of volume rendering as a clinical tool, with emphasis on CT angiography and skeletal pathology.
Regulation of the Mammalian Selenoprotein Thioredoxin Reductase 1 in Relation to Cellular Phenotype, Growth, and Signaling Events (2004)

Reactive oxygen species (ROS) are generated as toxic by-products of aerobic metabolism, but are also essential biomolecules in cell signaling. The thioredoxin (Trx) system is a major enzymatic system modulating ROS levels and is important for redox regulation of cellular function. It consists of Trx and thioredoxin reductase (TrxR), which reduces Trx using NADPH. Most, if not all, of the functions of Trx depend on the activity of TrxR. Mammalian TrxR enzymes are selenoproteins with broad substrate specificities, and alteration of cytosolic TrxR1 expression and activity is likely to be an important determinant for the control of cellular redox regulation. TrxR1 activity in cells seems to be modulated by an intricate interplay, involving a housekeeping type promoter in combination with alternative splice variants and transcriptional start sites, posttranscriptional regulation through AU-rich elements, inactivation by electrophilic agents and by itself modulating the effects of several key signaling molecules. TrxR1 activity is also intimately linked with several aspects of selenium metabolism, and hence selenoprotein function in general. Here, we summarize the current knowledge of these different levels of TrxR1 regulation in diverse cell types and in response to growth and signaling events.
Apparatus for Density and Dielectric Constant Measurements to 35 MPa on Fluids of Cryogenic Interest (1983)

An apparatus has been developed for simultaneous measurements of fluid densities and dielectric constants at temperatures from 70 to 320 K and at pressures to 35 MPa. A magnetic suspension technique, based on an application of Archimedes' principle, is employed in the density determination, while a concentric cylinder capacitor is used for obtaining the dielectric constant data. The apparatus can be used not only for determining densities and dielectric constants of compressed gases and liquids (including mixtures), but for saturated liquid and vapor properties as well. Also included is the capability for acquiring liquid-vapor equilibrium data for mixtures. The total uncertainty of a single density measurement is estimated to be approximately 0.1% for densities as low as 50 kg/m<sup>3</sup>; at lower densities, the uncertainty increases. The imprecision of the density data is typically less than 0.02%. The total uncertainty in the dielectric constants is approximately 0.01%. Experimental data for a 0.85 CH<sub>4</sub> + 0.15 C<sub>2</sub>H<sub>6</sub> mixture are given here to demonstrate the performance of the apparatus.
Lectinophagocytosis of encapsulated Klebsiella pneumoniae mediated by surface lectins of guinea pig alveolar macrophages and human monocyte-derived macrophages (1991)

Macrophages express a mannose/N-acetylglucosamine-specific lectin which serves as a receptor for nonopsonic phagocytosis of mannose-coated particles. We have examined the binding to guinea pig alveolar macrophages in a serum-free medium of 16 Klebsiella pneumoniae serotypes and of the capsular polysaccharides isolated from 7 of these serotypes. Only five polysaccharides containing the repeating sequence Man alpha 2/3Man or L-Rha alpha 2/3-L-Rha bound to the macrophages. Of the 11 bacterial serotypes expressing such disaccharides in their capsular polysaccharides, 7 bound efficiently, 2 bound poorly, and 2 did not bind at all. No binding occurred with five serotypes lacking these disaccharides. Binding of the bacteria was inhibited by homologous and heterologous capsular polysaccharides that contain the disaccharide sequences, by mannan, and by (Man)25BSA (where BSA is bovine serum albumin). Man alpha 2/3Man-containing oligosaccharides were potent inhibitors compared with monosaccharides. Binding was dependent on Ca2+, modulated by cultivating the macrophages on mannan-coated surfaces, and increased in human monocyte-derived macrophages compared with monocytes. The bulk of the bacteria bound to the macrophages was internalized and killed. The data taken together suggest that Klebsiella pneumoniae cells undergo lectinophagocytosis mediated by capsular disaccharides recognized by the mannose/N-acetylglucosamine-specific lectin of macrophages. This may enhance clearance of the organisms from the serum-poor environment of the lung.
Self‐Powered Piezoionic Strain Sensor toward the Monitoring of Human Activities (2016)

Wearable sensors for the detection of human activities including subtle physiological signals and large-scale body motion as well as distinguishing the motion direction are highly desirable, but still a challenge. A flexible wearable piezoionic strain sensor based on the ionic polymer membrane sandwiched between two conductive electrodes is developed. This ionic polymer sensor can generate electrical signal output (≈mV) with rapid response (≈50 ms) under the applied bending deformation due to the internal mobile ion redistribution. Compared with the currently studied resistive and capacitive sensors, this sensor can generate sensing signals without the requirement of additional power supply, and is able to distinguish the direction of the bending strain by observing the direction of generated electrical signals. For the sensor with metallic electrode, an output voltage of 1.3 mV is generated under a bending-induced strain of 1.8%, and this voltage can be largely increased when replacing the metallic electrodes by graphene composites. After simple encapsulation of the piezoionic sensor, a wearable sensor is constructed and succeeded in monitoring the diverse human activities ranging from complex large scale multidimensional motions to subtle signals, including wrist bending with different directions, sitting posture sensing, pulse wave, and finger touch.
Schottky-quantum dot photovoltaics for efficient infrared power conversion (2008)

Planar Schottky photovoltaic devices were prepared from solution-processed PbS nanocrystal quantum dot films with aluminum and indium tin oxide contacts. These devices exhibited up to 4.2% infrared power conversion efficiency, which is a threefold improvement over previous results. Solar power conversion efficiency reached 1.8%. The simple, optimized architecture allows for direct implementation in multijunction photovoltaic device configurations.
A Mouse Model of Melanoma Driven by Oncogenic KRAS (2010)

The small G-protein NRAS is mutated in 22% of human melanomas, whereas the related proteins KRAS and HRAS are mutated in only 2% and 1% of melanomas, respectively. We have developed a mouse model of melanoma in which Cre recombinase/LoxP technology is used to drive inducible expression of (G12V)KRAS in the melanocytic lineage. The mice develop skin hyperpigmentation, nevi, and tumors that bear many of the cardinal histopathology features and molecular characteristics of human melanoma. These tumors invade and destroy the underlying muscles and cells derived from them can grow as subcutaneous tumors and colonize the lungs of nude mice. These data establish that oncogenic KRAS can be a founder event in melanomagenesis.
Identification of the Substrate and Pseudosubstrate Binding Sites of Phosphorylase Kinase γ-Subunit (1995)

Using site-directed mutagenesis, we proposed that an autoinhibitory domain(s) is located at the C-terminal region (301-386) of the phosphorylase kinase gamma-subunit (Huang, C.-Y.F., Yuan C.-J., Livanova, N.B., and Graves, D.J. (1993) Mol. Cell. Biochem. 127/128, 7-18). Removal of the putative inhibitory domain(s) by truncation results in the generation of a constitutively active and calmodulin-independent form, gamma 1-300. To probe the structural basis of autoinhibition of gamma-subunit activity, two synthetic peptides, PhK13 (gamma 303-327) and PhK5 (gamma 343-367), corresponding to the two calmodulin-binding regions, were assayed for their ability to inhibit gamma 1-300. Competitive inhibition of gamma 1-300 by PhK13 was found versus phosphorylase b (Ki = 1.8 microM) and noncompetitive inhibition versus ATP. PhK5 showed noncompetitive inhibition with respect to both phosphorylase b and ATP. Calmodulin released the inhibition caused by both peptides. These results indicate that there are two distinct auto-inhibitory domains within the C terminus of the gamma-subunit and that these two domains overlap with the calmodulin-binding regions. Two mutant forms of gamma 1-300, E111K and E154R, were used to probe the enzyme-substrate-binding region using peptide substrate analogs corresponding to residues 9-18 of phosphorylase b (KRK11Q12ISVRGL). The data suggest that Glu111 interacts with the P-3 position of the substrate (Lys11) and Glu154 interacts with the P-2 site (Gln12). Both E111K and E154R were competitively inhibited with respect to phosphorylase b by PhK13, with 14- and 8-fold higher Ki values, respectively, than that observed with the wild-type enzyme. These data are consistent with a model for the regulation of the gamma-subunit of phosphorylase kinase in which PhK13 acts as a competitive pseudosubstrate that directly binds the substrate binding site of the gamma-subunit (Glu111 and Glu154).
PNA interference mapping demonstrates functional domains in the noncoding RNA Xist (2001)

The noncoding RNA Xist has been shown to be essential for X-chromosome inactivation and to coat the inactive X-chromosome (Xi). Thus, an important question in understanding the formation of Xi is whether the binding reaction of Xist is necessary for X-chromosome inactivation. In this article, we demonstrate the failure of X-chromosome silencing if the association of Xist with the X-chromosome is inhibited. The chromatin-binding region was functionally mapped and evaluated by using an approach for studying noncoding RNA function in living cells that we call peptide nucleic acid (PNA) interference mapping. In the reported experiments, a single 19-bp antisense cell-permeating PNA targeted against a particular region of Xist RNA caused the disruption of the Xi. The association of the Xi with macro-histone H2A is also disturbed by PNA interference mapping.
Single Chain Epidermal Growth Factor Receptor Antibody Conjugated Nanoparticles for in vivo Tumor Targeting and Imaging (2008)

Epidermal growth factor receptor (EGFR) targeted nanoparticle are developed by conjugating a single-chain anti-EGFR antibody (ScFvEGFR) to surface functionalized quantum dots (QDs) or magnetic iron oxide (IO) nanoparticles. The results show that ScFvEGFR can be successfully conjugated to the nanoparticles, resulting in compact ScFvEGFR nanoparticles that specifically bind to and are internalized by EGFR-expressing cancer cells, thereby producing a fluorescent signal or magnetic resonance imaging (MRI) contrast. In vivo tumor targeting and uptake of the nanoparticles in human cancer cells is demonstrated after systemic delivery of ScFvEGFR-QDs or ScFvEGFR-IO nanoparticles into an orthotopic pancreatic cancer model. Therefore, ScFvEGFR nanoparticles have potential to be used as a molecular-targeted in vivo tumor imaging agent. Efficient internalization of ScFvEGFR nanoparticles into tumor cells after systemic delivery suggests that the EGFR-targeted nanoparticles can also be used for the targeted delivery of therapeutic agents.
Geometric requirements and examples of important structures in the assembly of square building blocks (2002)

The basic structures for linking squares into polyhedra and networks (reticulation) are enumerated, and corresponding examples are described in which crystals were synthesized by linking paddle wheel (square) units into metal-organic frameworks (MOFs)--named MOF-102 to MOF-112.
Some Biochemical and Biophysical Parameters for the Study of the Pathogenesis of Osteoarthritis: a Comparison Between the Processes of Ageing and Degeneration in Human Hip Cartilage (1989)

We have investigated the changes in some of the biochemical and biophysical properties of human femoral head cartilage on the one hand during ageing and on the other hand in osteoarthritis. Topographical variations were also investigated. The parameters studied were those relevant to cartilage function, viz., proteoglycan concentration (as expressed by the concentration of negatively charged groups), the rate of glycosaminoglycan synthesis, water content, osmotic pressure and fluid loss during compression. During ageing the fixed charge density was found to increase at all sites of the femoral head provided fibrillation was absent: osmotic pressure increased accordingly whilst loss of fluid under the effect of externally applied compression diminished. In cartilage from osteoarthritic joints the opposite changes were found. The rate of GAG synthesis varied considerably with site on the femoral head. It decreased somewhat with age on the superior surface, but increased on the inferior surface. When the same sites were compared, the rate of GAG synthesis in cartilage from osteoarthritic heads was either the same as or lower than in cartilage form normal heads in the same group.
Slowing the translocation of double-stranded DNA using a nanopore smaller than the double helix (2010)

It is now possible to slow and trap a single molecule of double-stranded DNA (dsDNA), by stretching it using a nanopore, smaller in diameter than the double helix, in a solid-state membrane. By applying an electric force larger than the threshold for stretching, dsDNA can be impelled through the pore. Once a current blockade associated with a translocating molecule is detected, the electric field in the pore is switched in an interval less than the translocation time to a value below the threshold for stretching. According to molecular dynamics (MD) simulations, this leaves the dsDNA stretched in the pore constriction with the base-pairs tilted, while the B-form canonical structure is preserved outside the pore. In this configuration, the translocation velocity is substantially reduced from 1 bp/10 ns to approximately 1 bp/2 ms in the extreme, potentially facilitating high fidelity reads for sequencing, precise sorting, and high resolution (force) spectroscopy.
A best-first alignment algorithm for automatic extraction of transfer mappings from bilingual corpora (2001)

Translation systems that automatically extract transfer mappings (rules or examples) from bilingual corpora have been hampered by the difficulty of achieving accurate alignment and acquiring high quality mappings. We describe an algorithm that uses a best-first strategy and a small alignment grammar to significantly improve the quality of the transfer mappings extracted. For each mapping, frequencies are computed and sufficient context is retained to distinguish competing mappings during translation. Variants of the algorithm are run against a corpus containing 200K sentence pairs and evaluated based on the quality of resulting translations.
Structuring nanodiamond cone arrays for improved field emission (2003)

A structuring method capable of producing uniform, large-area cone arrays of diamond films was developed. The technique employs bias-assisted reactive ion etching and is applicable to any structure of diamond films ranging from microcrystalline to nanocrystalline. Variation of the etching conditions enables control of the cone density, geometry, and height. Surface nanostructuring of cone arrays significantly improves the field emission properties of diamond films of all kinds. The turn on field is reduced to 6 and 10 V/μm for nanodiamond and microdiamond films, respectively, (compared to &amp;gt;25 V/μm for as deposited surfaces). Lower cone density yields better field electron emission (lower turn-on electrical field) due to the screening in high-density cone arrays. The field emission properties are determined by both the enhancement factor of the cone array and the emitting properties of the material. The field electron emission properties of nanodiamond arrays are better than cone arrays of single crystalline diamond with a similar cone density and cone geometry.
Synthesis of sulphonamidoquinoline derivatives. (1976)

In a research for new antimicrobial agents effective in therapy a new series of sulphonamidoquinoline derivatives have been studied. Their molecules, have got the feature of both 1-alkyl-1,4-dihydro-4-oxopyridine-3-carboxylic acid and sulphonamides. The structure of such compounds has been confirmed by chemical and physico-chemical methods and their antimicrobial activity has been tested.
The nucleotide sequence of glutamate tRNA4of Drosophila melanogaster (1980)

The nucleotide sequence of Drosophila melanogaster glutamate tRNA4 was determined to be: pU-C-C-C-A-U-A-U-G-G-U-C-psi-A-G-D-G-G-C-D-A-G-G-A-U-A-U-C-U-G-G-C (m) -U-U-U-C-A-C-C-A-G-A-A-G-G-C-C-C-G-G-G-T-psi-U-C-G-A-U-U-C-C-C-G-G-U-A-U-G-G-G-A-A-C-C-AOH. A partial modified C is found at position 32 in the anticodon loop.
Effect of a High-Fat Ketogenic Diet on Plasma Levels of Lipids, Lipoproteins, and Apolipoproteins in Children (2003)

A high-fat ketogenic diet produced significant increases in the atherogenic apoB-containing lipoproteins and a decrease in the antiatherogenic HDL cholesterol. Further studies are necessary to determine if such a diet adversely affects endothelial vascular function and promotes inflammation and formation of atherosclerotic lesions.
The social construction of free trade: the European Union, NAFTA, and MERCOSUR (2006)

A large number of nation states throughout the globe entered into regional trade agreements (RTAs) during the 1980s and 1990s. Most observers assumed that the majority of RTAs could be understood as expressions of a single phenomenon: a widespread embrace of free trade. Uninterested in comparative questions, they made the collective turn to integration the subject of their analyses. This paper challenges this undifferentiated view of RTAs. In so doing, it produces evidence that directly speaks to current debates on globalization, the nature of markets, and the spread of neoliberalism across the world. The starting premise is that regional market building is a social endeavor, occurring in the midst of thick institutional contexts. Those contexts give rise to RTAs with remarkably different characteristics. The empirical analysis focuses on the European Union, the North American Free Trade Agreement, and Mercosur. Attention is given to the divergent evolution of law and organizations in three spheres of social life: working women, dairy products, and labor rights. The concluding section discusses additional variables shaping RTAs and venues for future research.