gebhart/patrepeval huggingface dataset:
Synthesis of Free-Standing Quasi-Two-Dimensional Polymers (2002)

This paper describes a synthesis of free-standing, 10−15-nm-thick polymer films of well-defined lateral size and shape. The three key elements of this procedure are (1) formation by microcontact printing (μCP) of a patterned, self-assembled monolayer (SAM) with hydrophobic regions (alkane-terminated) and adsorption-resistant regions (oligo(ethylene oxide)-terminated); (2) initiation of spatially selective growth of films of poly(electrolyte) multilayers by adsorption on the hydrophobic regions of the patterned SAM; and (3) dry transfer of these films to a water-soluble sacrificial backing, from which the films can be released into solution. This technique exploits the hydrophobic effect as an interaction that can be switched off when it is not needed: during the growth of the films in aqueous buffer, the hydrophobic effect anchors the polymers to the surface; once these films have been dried after synthesis, they are bound to the substrate only by van der Waals interactions and can be transferred nondestructively to a sacrificial backing. The growth and final state of the films were characterized using surface plasmon resonance (SPR), polarized infrared external reflectance spectroscopy (PIERS), ellipsometry, fluorescence microscopy, and atomic force microscopy (AFM).
Validation of the lactose-[13C]ureide breath test for determination of orocecal transit time by scintigraphy. (1999)

The breath test using 13C-LU is a valid alternative to scintigraphy techniques for measuring OCTT.
Visual task performance in blind humans with retinal prosthetic implants (2005)

A prototype electronic retinal prosthesis has been tested in three subjects. The system features an implanted retinal stimulator and an external system for image acquisition, processing, and telemetry. The subjects in general performed better than chance on psychophysical tests involving object detection, object counting, object discrimination, and direction of movement.
Influenza Activity — United States, September 30–December 1, 2018 (2018)

Influenza activity in the United States was low during October 2018, and, although it increased slowly during November, activity remains low across most of the country.* During the week ending December 1, 2018, the percentage of outpatient visits for influenza-like illness<sup>†</sup> (ILI) was equal to the national baseline<sup>§</sup> (Figure) and was at or slightly above the region-specific baseline in four of the 10 U.S. Department of Health and Human Services regions<sup>¶</sup> (Regions 4 and 7-9). The majority of jurisdictions experienced minimal or low ILI activity since September 30; however, two experienced moderate ILI activity, and two experienced high ILI activity** during the week ending December 1. The percentage of deaths attributed to pneumonia and influenza remains below the epidemic threshold,<sup>††</sup> and the rate of influenza-associated hospitalizations remains low. Five laboratory-confirmed, influenza-associated pediatric deaths occurring since September 30 have been reported to CDC. During the week ending December 1, the majority of jurisdictions (40 states, the District of Columbia, Puerto Rico, and U.S. Virgin Islands) reported sporadic or local geographic spread of influenza activity, nine states reported regional activity, and one state reported widespread activity.<sup>§§</sup>.
Radix-8 Digit-by-Rounding: Achieving High-Performance Reciprocals, Square Roots, and Reciprocal Square Roots (2011)

We describe a high-performance digit-recurrence algorithm for computing exactly rounded reciprocals, square roots, and reciprocal square roots in hardware at a rate of three result bits - one radix-8 digit - per recurrence iteration. To achieve a single-cycle recurrence at a short cycle time, we adapted the digit-by-rounding algorithm, which is normally applied at much higher radices, for efficient operation at radix 8. Using this approach avoids in the recurrence step the lookup table required by SRT - the usual algorithm used for hardware digit recurrences. The increasing access latency of this table, the size of which grows super linearly in the radix, limits high-frequency SRT implementations to radix 4 or lower. We also developed a series of novel optimizations focused on further reducing the critical path through the recurrence. We propose, for example, decreasing data path widths to a point where erroneous results sometimes occur and then correcting these errors off the critical path. We present a specific implementation that computes any of these functions to 31 bits of precision in 13 cycles. Our implementation achieves a cycle time only 11% longer than the best reported SRT design for the same functions, yet delivers results in five fewer cycles. Finally, we show that even at lower radices, a digit-by-rounding design is likely to have a shorter critical path than one using SRT at the same radix.
Evolution of decitabine development (2008)

Decitabine (5-aza-2'-deoxycytidine) is a hypomethylating agent with a dual mechanism of action: reactivation of silenced genes and differentiation at low doses, and cytotoxicity at high doses. The original studies in the 1980s used decitabine as a classical anticancer drug, at its maximum clinically tolerated dose, 1500 to 2500 mg/m(2) per course. At these doses, decitabine was found to be active in leukemia, but was associated with delayed and prolonged myelosuppression. After a better understanding of epigenetics in cancer and the role of decitabine in epigenetic (hypomethylating) therapy was gained, it was reevaluated at approximately 1/20th of the previous doses (ie, at 'optimal biologic' doses that modulate hypomethylation). In these dose schedules of decitabine (100 to 150 mg/m(2) per course), the drug was found to be active with manageable side effects in patients with myelodysplastic syndromes (MDS) and other myeloid tumors. Optimizing dosing schedules of decitabine to maximize hypomethylation (low dose, high dose intensity, and multiple cycles) have further improved results, suggesting that decitabine is an active therapy that alters the natural course of MDS. Combination therapies that augment the epigenetic effect of decitabine will likely improve responses and extend its use for the treatment of other malignancies.
Sacituzumab Govitecan-hziy in Refractory Metastatic Triple-Negative Breast Cancer (2019)

Sacituzumab govitecan-hziy was associated with durable objective responses in patients with heavily pretreated metastatic triple-negative breast cancer. Myelotoxic effects were the main adverse reactions. (Funded by Immunomedics; IMMU-132-01 ClinicalTrials.gov number, NCT01631552.).
Multiphoton‐Excited Visible Emission by Serotonin Solutions (1997)

Nonlinear excitation of the neurotransmitter serotonin (5HT) in aqueous solution is shown to generate a blue-green-emitting photoproduct in addition to UV fluorescence characteristic of native 5HT. The visible emission rate in diffusional steady-state measurements scales as the sixth power of excitation intensity, demonstrating that absorption of six near-IR photons is required to generate emission of one visible photon. Transient measurements reveal that this process is composed of two sequential nonlinear steps, the first excited by four photons and the second by two photons. These results, in combination with measurements of multiphoton-excited serotonin UV fluorescence, support a model in which 5HT is photochemically transformed as a consequence of four-photon absorption (Etot approximately 6 eV) to a photoproduct that then emits in the visible region via two-photon excitation. A minimum bound of approximately 10(-51) cm4 s photon-1 is observed for the two-photon emission action cross section at 830 nm. Photoionization, rather than reaction with a dissolved oxygen species, appears to be the primary mechanism for generation of the blue-green-emitting photoproduct. The peak intensities required to generate significant blue-green emission (approximately 5 x 10(11) W cm-2 from 80 MHz 150 fs titanium: sapphire laser pulses) are approximately five-fold higher than are typically used in two-photon laser scanning microscopy but are still substantially lower than the estimated intensity needed to induce dielectric breakdown of water.
BIOSYNTHESIS OF THE BLOOD GROUP P ANTIGEN-LIKE GalNAc^|^beta;1^|^rarr;3Gal^|^beta;1^|^rarr;4GlcNAc/Glc STRUCTURE: KINETIC EVIDENCE FOR THE RESPONSIBILITY OF N-ACETYLGLUCOSAMINYLTRANSFERASE (1993)

Previously we reported the occurrence of UDP-GalNAc:Gal beta 1-->4GlcNAc/Glc beta-1,3-N-acetylgalactosaminyltransferase activity in human plasma. Here, the donor substrate specificity of the enzyme partially purified from blood group O plasma was investigated by means of competition experiments with analogs of donor. The enzyme activity was found to be inhibited most strongly by UDP-GlcNAc among the nucleotide sugars tested, and UDP was the best inhibitor among test nucleotides. UDP-GlcNAc was much more inhibitory than UDP, whereas UDP-GalNAc was much less inhibitory than UDP. These results show that the donor-binding site of enzyme has a high affinity for UDP-GlcNAc, but not UDP-GalNAc, suggesting that the enzyme essentially functions in the transfer of N-acetylglucosamine. Indeed, UDP-GlcNAc:Gal beta 1-->4GlcNAc/Glc beta-1,3-N-acetylglucosaminyltransferase activity is known to occur in human plasma. The ratio of N-acetylgalactosamine to N-acetylglucosamine transferred to lactose with O or B plasma was 1:20 when assayed separately at 1 microM of donor, but increased to 1.2:1 at 5 mM. The nearly identical ratio was obtained with the partially purified enzyme preparation.
Reaktionen cyclischer Carbonsäureanhydride mit (α, α′‐Dipyridyl)‐(Cyclooctadien‐1, 5)‐nickel (1980)

Abstract (dipy)Ni(COD) reagiert mit Maleinsäureanhydrid (MSA) unter Substitution zu (dipy)Ni(MSA) 2 (I) und (dipy)Ni(MSA) (II). Während in I die Bindung nur über die C = C‐Gruppe erfolgt, Koordiniert MSA in II zusätzlich über eine Carbonylfunktion. Mit Phthalsäureanhydrid (PSA) und Bernsteinsäureanhydrid (BSA) ergibt (dipy)Ni(COD) im Zuge einer Redox‐addition Sechsgliedrige Metallacyclen V und VII, die bei erhöhter Temperatur unter Decarbonylierung in die fünfgliedrigen Metallacyclen VI bzw. VIII übergehen. Die IR‐Spektren der neuen Verbindungen werden diskutiert.
Open-Label Phase III Trial of Panitumumab Plus Best Supportive Care Compared With Best Supportive Care Alone in Patients With Chemotherapy-Refractory Metastatic Colorectal Cancer (2007)

Panitumumab significantly improved PFS with manageable toxicity in patients with chemorefractory colorectal cancer.
Size-Sorted Anionic Iron Oxide Nanomagnets as Colloidal Mediators for Magnetic Hyperthermia (2007)

Iron oxide colloidal nanomagnets generate heat when subjected to an alternating magnetic field. Their heating power, governed by the mechanisms of magnetic energy dissipation for single-domain particles (Brown and Néel relaxations), is highly sensitive to the crystal size, the material, and the solvent properties. This study was designed to distinguish between the contributions of Néel and Brownian mechanisms to heat generation. Anionic nanocrystals of maghemite and cobalt ferrite, differing by their magnetic anisotropy, were chemically synthesized and dispersed in an aqueous suspension by electrostatic stabilization. The particles were size-sorted by successive electrostatic phase separation steps. Parameters governing the efficiency of nanomagnets as heat mediators were varied independently; these comprised the particle size (from 5 to 16.5 nm), the solvent viscosity, magnetic anisotropy, and the magnetic field frequency and amplitude. The measured specific loss powers (SLPs) were in quantitative agreement with the results of a predictive model taking into account both Néel and Brown loss processes and the whole particle size distribution. By varying the carrier fluid viscosity, we found that Brownian friction within the carrier fluid was the main contributor to the heating power of cobalt ferrite particles. In contrast, Néel internal rotation of the magnetic moment accounted for most of the loss power of maghemite particles. Specific loss powers were varied by 3 orders of magnitude with increasing maghemite crystal size (from 4 to 1650 W/g at 700 kHz and 24.8 kA/m). This comprehensive parametric study provides the groundwork for the use of anionic colloidal nanocrystals to generate magnetically induced hyperthermia in various media, including complex systems and biological materials.
A method for GPS positioning (1996)

We present an algorithm that estimates position using the Global Positioning System (GPS) C/A code measurements. We include an approximation for the covariance of the position estimate.
Partial purification and characterization of the ribonucleotide reductase induced by herpes simplex virus infection of mammalian cells (1981)

In this report we confirm and further characterize the induction of a novel ribonucleotide reductase after herpes simplex virus infection of mammalian cells. Induction of the enzyme was observed at a multiplicity of infection of 1 PFU/cell or greater and was found to be maximal (three- to sixfold the activity in mock-infected controls at 6 to 8 h postinfection at a multiplicity of infection of 10 PFU/cell. Partial purification and subsequent characterization of the reductase activity from infected cells demonstrated the existence of two enzymes which could be separated by precipitation with ammonium sulfate. One of the activities precipitated at between 35 and 55% salt saturation, as did the enzyme from control cells, whereas the novel activity precipitated at 0 to 35% saturation. This latter enzyme was similar to the herpes simplex virus-induced reductase described by others in its lack of requirement for Mg2 and its resistance to inhibition by dTTP and dATP; in addition, we found that it was inhibited by ATP, whereas the enzyme from control cells displayed an absolute requirement for the nucleotide. Both enzymes were equally inhibited by pyridoxal phosphate and showed similar cold and heat stability. The enzyme induced by herpes simplex virus infection, however, was much more labile than the control enzyme upon purification.
Internalization and Trafficking of Cell Surface Proteoglycans and Proteoglycan‐Binding Ligands (2007)

Using multicolor live cell imaging in combination with biochemical assays, we have investigated an endocytic pathway mediated by cell surface proteoglycans, primary receptors for many cationic ligands. We have characterized this pathway for a variety of proteoglycan-binding ligands including cationic polymers, lipids and polypeptides. Following clathrin- and caveolin-independent, but flotillin- and dynamin-dependent internalization, proteoglycan-bound ligands associate with flotillin-1-positive vesicles and are efficiently trafficked to late endosomes. The route to late endosomes differs considerably from that following clathrin-mediated endocytosis. The proteoglycan-dependent pathway to late endosomes does not require microtubule-dependent transport or phosphatidyl-inositol-3-OH kinase-dependent sorting from early endosomes. The pathway taken by these ligands is identical to that taken by an antibody against heparan sulfate proteoglycans, suggesting that this mechanism may be used generally by cell surface proteoglycans and proteoglycan-binding ligands that lack secondary receptors.
Interleukin‐1 (IL‐1) receptor blockade reduces endotoxin and Borrelia burgdorferi ‐stimulated IL‐8 synthesis in human mononuclear cells (1992)

Interleukin-1 (IL-1) is a potent stimulator of IL-8 production by fibroblasts and monocytes. In the present study, we asked how much of endotoxin (LPS)-induced IL-8 production by human peripheral blood mononuclear cells was due to IL-1 induced by LPS. Cells were stimulated with either IL-1 beta, LPS, or Borrelia burgdorferi, and total IL-8 was determined by a specific radioimmunoassay. The addition of saturating concentrations of IL-1 receptor antagonist protein (IRAP) reduced the IL-1 beta-, LPS-, and B. burgdorferi-induced IL-8 synthesis by 85, 50, and 40%, respectively. Increasing the concentration of LPS did not affect the reduction in IL-8 synthesis observed in the presence of IRAP. Significant inhibition of the IL-1 beta-induced IL-8 synthesis was observed when IRAP was added 60 or 90 min after IL-1 beta; similarly, IL-8 synthesis after LPS was also reduced by delayed addition of IRAP. These data suggest that the ameliorative effects of IL-1 receptor blockade in models of inflammation and infection may be due, in part, to suppression of IL-1-induced IL-8.
Optical characterization of Mn:YAlO_3 : material for holographic recording and data storage (1998)

Photoinduced coloration and the holographic grating recording associated with it are experimentally studied in Mn-doped yttrium orthoaluminate (Mn:YAlO3). High diffraction efficiency is demonstrated in visible and in infrared light. The diffraction efficiency at 514.5 nm exceeds 50%. The strong energy exchange between the writing beams observed in a two-wave mixing experiment suggests that diffraction in Mn:YAlO3 is due to mainly nonlocal holographic effect and an electro-optical effect. Mn:YAlO3 is shown to be a promising material for holographic recording and optical storage.
Interleukin-17 and Lung Host Defense against Klebsiella pneumoniae Infection (2001)

Bacterial pneumonia remains an important cause of morbidity and mortality worldwide, especially in immune-compromised patients. Cytokines and chemokines are critical molecules expressed in response to invading pathogens and are necessary for normal lung bacterial host defenses. Here we show that interleukin (IL)-17, a novel cytokine produced largely by CD4+ T cells, is produced in a compartmentalized fashion in the lung after challenge with Klebsiella pneumoniae. Moreover, overexpression of IL-17 in the pulmonary compartment using a recombinant adenovirus encoding murine IL-17 (AdIL-17) resulted in the local induction of tumor necrosis factor-alpha, IL-1beta, macrophage inflammatory protein-2, and granulocyte colony-stimulating factor (G-CSF); augmented polymorphonuclear leukocyte recruitment; and enhanced bacterial clearance and survival after challenge with K. pneumoniae. However, simultaneous treatment with AdIL-17 provided no survival benefit after intranasal K. pneumoniae challenge. These data show that IL-17 may have a role in priming for enhanced chemokine and G-CSF production in the context of lung infection and that optimally timed gene therapy with IL-17 may augment host defense against bacterial pneumonia.
EphA2 overexpression is associated with angiogenesis in ovarian cancer (2006)

EphA2 overexpression in endothelial and ovarian cancer cells was strongly associated with critical factors involved in angiogenesis and invasion. These findings may explain the poor clinical outcome of patients with EphA2 overexpression.
Response of Foot-and-Mouth Disease Virus to Increased Mutagenesis: Influence of Viral Load and Fitness in Loss of Infectivity (2000)

Passage of foot-and-mouth disease virus (FMDV) in cell culture in the presence of the mutagenic base analog 5-fluorouracil or 5-azacytidine resulted in decreases of infectivity and occasional extinction of the virus. Low viral loads and low viral fitness enhanced the frequency of extinction events; this finding was shown with a number of closely related FMDV clones and populations differing by up to 10(6)-fold in relative fitness in infections involving either single or multiple passages in the absence or presence of the chemical mutagens. The mutagenic treatments resulted in increases of 2- to 6.4-fold in mutation frequency and up to 3-fold in mutant spectrum complexity. The largest increase observed corresponded to the 3D (polymerase)-coding region, which is highly conserved in nonmutagenized FMDV populations. As a result, nucleotide sequence heterogeneity for the 3D-coding region became very similar to that for the variable VP1-coding region in FMDVs multiply passaged in the presence of chemical mutagens. The results suggest that strategies to combine reductions of viral load and viral fitness could be effectively associated with extinction mutagenesis as a potential new antiviral strategy.
Human Umbilical Cord Mesenchymal Stem Cell Exosomes Enhance Angiogenesis Through the Wnt4/β-Catenin Pathway (2015)

Human umbilical cord mesenchymal stem cells (hucMSCs) and their exosomes have been considered as potential therapeutic tools for tissue regeneration; however, the underlying mechanisms are still not well understood. In this study, we isolated and characterized the exosomes from hucMSCs (hucMSC-Ex) and demonstrated that hucMSC-Ex promoted the proliferation, migration, and tube formation of endothelial cells in a dose-dependent manner. Furthermore, we demonstrated that hucMSC-Ex promoted wound healing and angiogenesis in vivo by using a rat skin burn model. We discovered that hucMSC-Ex promoted β-catenin nuclear translocation and induced the increased expression of proliferating cell nuclear antigen, cyclin D3, N-cadherin, and β-catenin and the decreased expression of E-cadherin. The activation of Wnt/β-catenin is critical in the induction of angiogenesis by hucMSC-Ex, which could be reversed by β-catenin inhibitor ICG-001. Wnt4 was delivered by hucMSC-Ex, and the knockdown of Wnt4 in hucMSC-Ex abrogated β-catenin nuclear translocation in endothelial cells. The in vivo proangiogenic effects were also inhibited by interference of Wnt4 expression in hucMSC-Ex. Taken together, these results suggest that hucMSC-Ex-mediated Wnt4 induces β-catenin activation in endothelial cells and exerts proangiogenic effects, which could be an important mechanism for cutaneous wound healing.
Tissue Expansion (1986)

Epidermal mitotic activity during tissue expansion has been assessed in the guinea pig using tritiated thymidine and other confirmatory techniques. Implant inflation results in a threefold elevation of epidermal mitotic activity within 24 hours, followed by a gradual return to normal baseline over 2 to 5 days. Implant deflation, conversely, causes a transient decrease in epidermal mitotic activity. Neither of these phenomena has been previously described. It confirms previous animal studies which illustrate the highly responsive nature of the epidermis to physical stimuli and supports the view that tissue expansion is a highly useful manipulation of normal physiologic processes.