gebhart/patrepeval huggingface dataset:
Migraine: a review and future directions for treatment (2006)

Migraine is a chronic, neurological disorder generally manifesting itself in attacks with severe headache, nausea and an increased reactivity to sensory stimuli. A low migraine threshold is set by genetic factors, although the phenotype also modulates the manifestations. The 1-year prevalence is approximately 13% and is higher among women. Patients usually experience neuropsychological dysfunction, and sometimes also reversible focal neurological symptoms. The trajectories of the characteristic symptoms of acute migraine usually follow a similar time course, indicating a reciprocal underlying mechanism. A central nervous system hyperexcitability has been demonstrated in neurophysiological studies. The dibilitating effects of migraine are not confined to the attacks per se. Many individuals do not recover completely between the attacks and most report a negative impact on the most important life domains, and an interest in testing other treatments. Young persons have a higher frequency of attacks. Acute treatment should routinely be initiated with an analgesic plus a prokinetic anti-emetic. Triptans must not be provided early during the attack to ensure their efficacy. The natural course of attacks is commonly only temporarily altered by acute treatment. Non-pharmacological treatment and drugs may be equally viable in prophylaxis for migraine. In more complicated cases, conjoint therapy should be considered. New strategies to improve adherence with existing therapeutic regimens might yield greater benefits than will new pharmacological agents.
A Double-blind, Placebo-Controlled Study of Risperidone in Adults With Autistic Disorder and Other Pervasive Developmental Disorders (1998)

Risperidone is more effective than placebo in the short-term treatment of symptoms of autism in adults.
Parameter control in evolutionary algorithms (1999)

The issue of controlling values of various parameters of an evolutionary algorithm is one of the most important and promising areas of research in evolutionary computation: it has a potential of adjusting the algorithm to the problem while solving the problem. In the paper we: 1) revise the terminology, which is unclear and confusing, thereby providing a classification of such control mechanisms, and 2) survey various forms of control which have been studied by the evolutionary computation community in recent years. Our classification covers the major forms of parameter control in evolutionary computation and suggests some directions for further research.
Acute Spinal Cord Injury, Part I: Pathophysiologic Mechanisms (2001)

Spinal cord injury (SCI) is a devastating and common neurologic disorder that has profound influences on modern society from physical, psychosocial, and socioeconomic perspectives. Accordingly, the present decade has been labeled the Decade of the Spine to emphasize the importance of SCI and other spinal disorders. Spinal cord injury may be divided into both primary and secondary mechanisms of injury. The primary injury, in large part, determines a given patient's neurologic grade on admission and thereby is the strongest prognostic indicator. However, secondary mechanisms of injury can exacerbate damage and limit restorative processes, and hence, contribute to overall morbidity and mortality. A burgeoning body of evidence has facilitated our understanding of these secondary mechanisms of injury that are amenable to pharmacological interventions, unlike the primary injury itself. Secondary mechanisms of injury encompass an array of perturbances and include neurogenic shock, vascular insults such as hemorrhage and ischemia-reperfusion, excitotoxicity, calcium-mediated secondary injury and fluid-electrolyte disturbances, immunologic injury, apoptosis, disturbances in mitochondrion function, and other miscellaneous processes. Comprehension of secondary mechanisms of injury serves as a basis for the development and application of targeted pharmacological strategies to confer neuroprotection and restoration while mitigating ongoing neural injury. The first article in this series will comprehensively review the pathophysiology of SCI while emphasizing those mechanisms for which pharmacologic therapy has been developed, and the second article reviews the pharmacologic interventions for SCI.
Uptake of chemically modified low density lipoproteins in vivo is mediated by specific endothelial cells. (1985)

Acetoacetylated (AcAc) and acetylated (Ac) low density lipoproteins (LDL) are rapidly cleared from the plasma (t1/2 approximately equal to 1 min). Because macrophages, Kupffer cells, and to a lesser extent, endothelial cells metabolize these modified lipoproteins in vitro, it was of interest to determine whether endothelial cells or macrophages could be responsible for the in vivo uptake of these lipoproteins. As previously reported, the liver is the predominant site of the uptake of AcAc LDL; however, we have found that the spleen, bone marrow, adrenal, and ovary also participate in this rapid clearance. A histological examination of tissue sections, undertaken after the administration of AcAc LDL or Ac LDL (labeled with either 125I or a fluorescent probe) to rats, dogs, or guinea pigs, was used to identify the specific cells binding and internalizing these lipoproteins in vivo. With both techniques, the sinusoidal endothelial cells of the liver, spleen, bone marrow, and adrenal were labeled. Less labeling was noted in the ovarian endothelia. Uptake of AcAc LDL by endothelial cells of the liver, spleen, and bone marrow was confirmed by transmission electron microscopy. These data suggest uptake through coated pits. Uptake of AcAc LDL was not observed in the endothelia of arteries (including the coronaries and aorta), veins, or capillaries of the heart, testes, kidney, brain, adipose tissue, and duodenum. Kupffer cells accounted for a maximum of 14% of the 125I-labeled AcAc LDL taken up by the liver. Isolated sinusoidal endothelial cells from the rat liver displayed saturable, high affinity binding of AcAc LDL (Kd = 2.5 X 10(-9) M at 4 degrees C), and were shown to degrade AcAc LDL 10 times more effectively than aortic endothelial cells. These data indicate that specific sinusoidal endothelial cells, not the macrophages of the reticuloendothelial system, are primarily responsible for the removal of these modified lipoproteins from the circulation in vivo.
Emerging prognostic markers to determine Crohn's disease natural history and improve management strategies: a review of recent literature. (2010)

Because Crohn's disease (CD) is a chronic, incurable condition, patients require life-long therapeutic approaches to initiate and maintain symptom control, improve quality of life, avoid hospitalizations and surgery, and minimize short- and long-term toxicity and complications such as stricturing, fistulae, osteoporosis and associated bony fractures, and linear growth failure in pediatric patients. Many physicians use symptom-based classifications, such as those published in the American College of Gastroenterology Practice Guidelines, to classify disease severity. However, all current classifications for CD focus predominantly on treating the present symptoms and not on the long-term treatment goal of altering the natural history of the disease. If physicians were able to identify disease phenotypes; at diagnosis, they could advise a course of robust intervention or more. conservative therapeutic modalities with a lower risk of toxicity, as appropriate. Over the past several years, much interest has developed in the role of genetic and serologic markers as prognostic tools in CD. With these genetic and serologic data in mind, clinicians have a growing ability to harness laboratory and genetic testing information in order to stratify patients relative to their risk of disease progression from the time of diagnosis, allowing for a more individualized treatment plan for each patient.
HitchHike (2016)

We present HitchHike, a low power backscatter system that can be deployed entirely using commodity WiFi infrastructure. With HitchHike, a low power tag reflects existing 802.11b transmissions from a commodity WiFi transmitter, and the backscattered signals can then be decoded as a standard WiFi packet by a commodity 802.11b receiver. Hitch-Hike's key invention is a novel technique called codeword translation, which allows a backscatter tag to embed its information on standard 802.11b packets by just translating the original transmitted 802.11b codeword to another valid 802.11b codeword. This allows any 802.11b receiver to decode the backscattered packet, thus opening the doors for widespread deployment of low-power backscatter communication using widely available WiFi infrastructure. We show experimentally that HitchHike can achieve an uplink throughput of up to 300Kbps at ranges of up to 34m and ranges of up to 54m where it achieves a throughput of around 200Kbps.
A signed switching time bang-bang attitude control law for fine pointing of flexible spacecraft† (1984)

A new approach for microprocessor implementation is introduced for simultaneous control of the attitude and a number of flexure modes, assuming a lumped parameter dynamics model and control actuators mounted on a central rigid body. The switching times of the bang-bang control to be applied are calculated as a function of the current state estimate so as to render the control system performance almost independent of the microprocessor iteration interval. The control law is applicable where the modes are of arbitrarily low frequency so that the current trend of increasing size of spacecraft structures does not impose a limitation. The approach is naturally suited to gas jet actuators, but is also applicable with continuous actuators such as reaction wheels, in which case control torque saturation limits are automatically considered and the effects of bearing stiction reduced by means of the control dither produced during the limit cycle. Attention is restricted at present to control of a single axis, three-axis control with inter-axis coupling requiring a multivariable extension of the principle. At present, initial conditions must be within a certain neighbourhood of the state origin, but developments of the control principle are envisaged which will remove this restriction. Simulation results are presented of a single-axis control with up to three modes and various combinations of frequency.
Contrastive Multiview Coding (2019)

Humans view the world through many sensory channels, e.g., the long-wavelength light channel, viewed by the left eye, or the high-frequency vibrations channel, heard by the right ear. Each view is noisy and incomplete, but important factors, such as physics, geometry, and semantics, tend to be shared between all views (e.g., a "dog" can be seen, heard, and felt). We investigate the classic hypothesis that a powerful representation is one that models view-invariant factors. We study this hypothesis under the framework of multiview contrastive learning, where we learn a representation that aims to maximize mutual information between different views of the same scene but is otherwise compact. Our approach scales to any number of views, and is view-agnostic. We analyze key properties of the approach that make it work, finding that the contrastive loss outperforms a popular alternative based on cross-view prediction, and that the more views we learn from, the better the resulting representation captures underlying scene semantics. Our approach achieves state-of-the-art results on image and video unsupervised learning benchmarks. Code is released at: http://github.com/HobbitLong/CMC/.
Prevalence of clopidogrel non-responders among patients with stable angina pectoris scheduled for elective coronary stent placement (2003)

Dual antiplatelet therapy with aspirin and clopidogrel decreases the rate of stent thrombosis in patients undergoing percutaneous coronary intervention (PCI). However, despite intensified antiplatelet treatment, up to 4.7% of the patients undergoing coronary stenting develop thrombotic stent occlusion, suggesting incomplete platelet inhibition due to clopidogrel resistance. We evaluated the percentage of clopidogrel non-responders among 105 patients with coronary artery disease (CAD) undergoing elective PCI. All patients were treated regularly with aspirin 100 mg/d and received a loading dose of 600 mg clopidogrel followed by a maintenance dose of 75 mg/d before PCI. Clopidogrel non-responders were defined by an inhibition of ADP (5 and 20 Mol/L) induced platelet aggregation that was less than 10% when compared to baseline values 4 h after clopidogrel intake. Semi-responders were identified by an inhibition of 10 to 29%. Patients with an inhibition over 30% were regarded as responders. We found that 5 (ADP 5 Mol/L) to 11% (ADP 20 Mol/L) of the patients were non-responders and 9 to 26% were semi-responders. Among the group of non-responders there were two incidents of subacute stent thrombosis after PCI. We conclude that a subgroup of patients undergoing PCI does not adequately respond to clopidogrel, which may correspond to the occurrence of thromboischemic complications. Point-of-care testing may help to identify these patients who may then benefit from an alternative antiplatelet therapy.
OOMMPPAA: A Tool To Aid Directed Synthesis by the Combined Analysis of Activity and Structural Data (2014)

There is an ever increasing resource in terms of both structural information and activity data for many protein targets. In this paper we describe OOMMPPAA, a novel computational tool designed to inform compound design by combining such data. OOMMPPAA uses 3D matched molecular pairs to generate 3D ligand conformations. It then identifies pharmacophoric transformations between pairs of compounds and associates them with their relevant activity changes. OOMMPPAA presents this data in an interactive application providing the user with a visual summary of important interaction regions in the context of the binding site. We present validation of the tool using openly available data for CDK2 and a GlaxoSmithKline data set for a SAM-dependent methyl-transferase. We demonstrate OOMMPPAA's application in optimizing both potency and cell permeability and use OOMMPPAA to highlight nuanced and cross-series SAR. OOMMPPAA is freely available to download at http://oommppaa.sgc.ox.ac.uk/OOMMPPAA/ .
Expression of Green Fluorescent Protein Fused to Magnetosome Proteins in Microaerophilic Magnetotactic Bacteria (2008)

The magnetosomes of magnetotactic bacteria are prokaryotic organelles consisting of a magnetite crystal bounded by a phospholipid bilayer that contains a distinct set of proteins with various functions. Because of their unique magnetic and crystalline properties, magnetosome particles are potentially useful as magnetic nanoparticles in a number of applications, which in many cases requires the coupling of functional moieties to the magnetosome membrane. In this work, we studied the use of green fluorescent protein (GFP) as a reporter for the magnetosomal localization and expression of fusion proteins in the microaerophilic Magnetospirillum gryphiswaldense by flow cytometry, fluorescence microscopy, and biochemical analysis. Although optimum conditions for high fluorescence and magnetite synthesis were mutually exclusive, we established oxygen-limited growth conditions, which supported growth, magnetite biomineralization, and GFP fluorophore formation at reasonable rates. Under these optimized conditions, we studied the subcellular localization and expression of the GFP-tagged magnetosome proteins MamC, MamF, and MamG by fluorescence microscopy and immunoblotting. While all fusions specifically localized at the magnetosome membrane, MamC-GFP displayed the strongest expression and fluorescence. MamC-GFP-tagged magnetosomes purified from cells displayed strong fluorescence, which was sensitive to detergents but stable under a wide range of temperature and salt concentrations. In summary, our data demonstrate the use of GFP as a reporter for protein localization under magnetite-forming conditions and the utility of MamC as an anchor for magnetosome-specific display of heterologous gene fusions.
A Study of Functional Anatomy of Aortic-Mitral Valve Coupling Using 3D Matrix Transesophageal Echocardiography (2008)

This is the first study to report quantitative 3D assessment of the mitral and aortic valve dynamics from matrix array transesophageal images and describe the mitral-aortic coupling in a beating human heart. This ability may have impact on patient evaluation for valvular surgical interventions and prosthesis design.
Enhanced Electron Extraction from Template-Free 3D Nanoparticulate Transparent Conducting Oxide (TCO) Electrodes for Dye-Sensitized Solar Cells (2012)

The semiconducting metal oxide-based photoanodes in the most efficient dye-sensitized solar cells (DSSCs) desires a low doping level to promote charge separation, which, however, limits the subsequent electron extraction in the slow diffusion regime. These conflicts are mitigated in a new photoanode design that decouples the charge separation and extraction functions. A three-dimensional highly doped fluorinated SnO2 (FTO) nanoparticulate film serves as conductive core for low-resistance and drift-assisted charge extraction while a thin, low-doped conformal TiO2 shell maintains a large resistance to recombination (and therefore long charge lifetime). EIS reveals that the electron transit time is reduced by orders of magnitude, whereas the recombination resistance remains in the range of traditional nanoparticle TiO2 photoelectrodes.
Microbend fiber-optic sensor as extended hydrophone (1982)

A novel microbend fiber-optic acoustic sensor has been studied, both analytically and experimentally. The sensor is simple mechanically, insensitive to acceleration, and achieves shape flexibility by utilizing fairly long fiber lengths for the sensing element. The acoustic sensitivity and minimum detectable pressure of the sensor were found to be significantly improved over previously reported microbend sensors. Further optimization of the sensor appears possible.
High Precision Isotope Ratio Monitoring Techniques in Mass Spectrometry (1996)

Isotope ratio monitoring following on-line combustion is a new method in gas chromatography/mass spectrometry (GC/MS) that allows the ratios of abundances of stable isotopes of elements such as carbon and nitrogen to be determined for individual compounds introduced via a gas chromatograph. It is the first combustion method that allows direct measurement of isotope ratios of individual molecular components of mixtures. Unlike traditional gas isotope ratio measurements made on pure samples, the method requires only very small samples, viz. several picolitres of the vapour. This paper reviews the principles and history of gas isotope ratio monitoring, focusing on the instrumentation used in isotope ratio monitoring GC/MS, including the combustion procedures used for atomization. Standardization methods and data manipulation techniques are described, as are applications to geochemistry, biology, medicine and other areas of science.
Correlation of Astrocytic S100β Expression with Dystrophic Neurites in Amyloid Plaques of Alzheimerʼs Disease (1996)

The neurite extension factor S100 beta is overexpressed by activated astrocytes associated with amyloid-containing plaques in Alzheimer's disease, and has been implicated in dystrophic neurite formation in these plaques. This predicts (a) that the appearance of S100beta- immunoreactive (S100beta+) astrocytes precedes that of dystrophic neurites in diffuse amyloid deposits and (b) that the number of these astrocytes correlates with the degree of dystrophic neurite proliferation in neuritic plaques. As a test of the first prediction, we determined the number of S100beta+ astrocytes associated with different plaque types: diffuse non-neuritic, diffuse neuritic, dense-core neuritic, and dense-core non-neuritic. Diffuse non-neuritic plaques had small numbers of associated S100beta+ astrocytes (1.3 +/- 0.1 S100beta astrocytes per plaque [mean +/- SEM]; 80% of plaques had one or more). These astrocytes were most abundant in diffuse neuritic plaques (4.2 +/- 0.2; 100%), were somewhat less numerous in dense-core neuritic plaques (1.6 +/- 0.2; 90%), and were only rarely associated with dense-core non-neuritic plaques (0.15 +/- 0.05; 12%). As a test of the second prediction, we correlated the number of S100beta+ astrocytes per plaque with the area of beta-amyloid precursor protein (beta-APP) immunoreactivity per plaque (an index of the size of the plaques' dystrophic neurite shells) and found a significant positive correlation (r = 0.74, p < 0.001). This correlation was also evident at the tissue level: the numbers of S100beta+ astrocytes per plaque-rich field correlated with the total area beta-APP immunoreactivity in these fields (r = 0.66, p < 0.05). These correlations support the idea that astrocytic activation and S100 beta overexpression are involved in the induction and maintenance of dystrophic neurites in amyloid deposits, and support the concept of a glial cytokine-mediated cascade underlying the progression of neuropathological changes in Alzheimer's disease.
Stimulating Macrophage Activity in Mice and Humans by Oral Administration of Quillaja Saponin (2011)

Quillaja saponin (QS) was examined for its immunostimulating effect on mice and humans after oral administration. Mice fed QS for 24 h significantly increased in chemotactic and phagocytosis activities of peritoneal macrophages. This enhancing effect in both activities continued for 4-d after QS administration. Mice fed QS for 24 h prior to an interperitoneal challenge with Escherichia coli showed a higher survival rate than the control group. Peripheral blood analysis of volunteers showed significant increases in chemotactic and phagocytosis activities after oral administration of QS for 7 d. Furthermore, the volunteers did not show significant changes in immunoglobulin, transaminase, IL-1α, or TNF-α levels, or in serum albumin concentrations. Thus orally administered QS can effectively enhance the immune response through stimulation of macrophages without adverse effects.
Towards a non-invasive interictal application of hypothermia for treating seizures: a feasibility and pilot study (2008)

Non-invasive head-neck cooling is safe and well-tolerated. Initial pilot data in patients suggest that additional therapeutic studies are warranted.
Preparation, Properties, and Synthetic Potentials of Novel Boronates in a Fluorous Version (Fluorous Boronates) (2002)

[reaction: see text] A series of boronic acids were attached to a fluorous tag by esterification. Functional transformations of these boronates together with the fluorous Suzuki coupling reaction illustrated their usefulness in fluorous-phase techniques.