gebhart/patrepeval huggingface dataset:
Processing and Activation of CMH-1 by Granzyme B (1996)

Granzyme B plays an essential role in cytotoxic T lymphocyte (CTL)-mediated cell killing. Recent studies suggest that granzyme B may exert its effect by cleaving and activating CPP32, a member of the interleukin-1 beta-converting enzyme/Ced-3 family of cysteine proteases. We have examined the processing and activation of CMH-1, a close homologue of CPP32, by granzyme B in vitro. We have found that granzyme B specifically cleaves CMH-1 at Asp198-Ser199 between the p20 and p12 and activates the cysteine protease. Cleavage between p20 and the prosequence of CMH-1 at Asp23-Ala24 is autocatalytic and is not required for CMH-1 activity in vitro. The cleavage and activation of CMH-1 by granzyme B in vitro sugge st that, in addition to CPP32, CMH-1 may also play a role in CTL-mediated cell killing.
The Role of Research in the Development of U.S. Federal Alcohol Control Policy (2004)

In the development of federal alcohol control policy, is research used merely to inform policymakers and the public, or to persuade them? Is it critical to the enactment of public policy, or is it an afterthought? To answer these questions, we analyzed in-depth interviews with federal alcohol policy community members, including those of the executive and legislative branches, interest group representatives, advocates, and media professionals. A snowball sampling strategy was used to collect 64 interviews. Informants were asked to respond in free narrative to questions about the role of research in policymaking generally and in instances known to the informant personally. Interview data were coded for demographics and content was analyzed. We also examined governmental documents pertaining to policies mentioned by subjects. Respondents perceived scientific information as only one of many levers relevant to the policymaking process, its role significantly constrained by rules governing policymaking strategy.
Spatially-multiplexed fibre-optic Bragg gratingstrain and temperaturesensor system based on interferometric wavelength-shift detection (1995)

A prototype fibre-optic system using interferometric wavelength-shift detection, capable of multiplexing up to 32 fibre-optic Bragg grating strain and temperature sensors with identical characteristics, has been demonstrated. THS system is based on a spatially multiplexed scheme for use with fibre-based low-coherence interferometric sensors, reported previously. Four fibre-optic Bragg grating channels using the same fibre grating have been demonstrated for measuring quasi-static strain and temperature.
A Liposomal Nanoscale Contrast Agent for Preclinical CT in Mice (2006)

The liposomal-based iodinated contrast agent shows long residence time in the blood pool, very high attenuation within submillimeter vessels, and no significant renal clearance rendering it an effective contrast agent for murine vascular imaging using a micro-CT scanner.
Induction of Necrosis in Human Macrophage Cell Lines by Corynebacterium diphtheriae and Corynebacterium ulcerans Strains Isolated from Fatal Cases of Systemic Infections (2019)

When infecting a human host, <i>Corynebacterium diphtheriae</i> and <i>Corynebacterium ulcerans</i> are able to impair macrophage maturation and induce cell death. However, the underlying molecular mechanisms are not well understood. As a framework for this project, a combination of fluorescence microscopy, cytotoxicity assays, live cell imaging, and fluorescence-activated cell sorting was applied to understand the pathogenicity of two <i>Corynebacterium</i> strains isolated from fatal cases of systemic infections. The results showed a clear cytotoxic effect of the bacteria. The observed survival of the pathogens in macrophages and, subsequent, necrotic lysis of cells may be mechanisms explaining dissemination of <i>C. diphtheriae</i> and <i>C. ulcerans</i> to distant organs in the body.
Keeping Eye and Mind on the Road (2005)

This thesis is devoted to understanding and counteracting the primary contributing factor in traffic crashes: inattention. Foremost, it demonstrates the fundamental importance of proactive gaze in the road centre area for action guidance in driving. Inattention is explained with regard to two visual functions (vision-for-action and vision-for-identification), three forms of attentional selection (action-driven-, stimulus-driven-, and goal-directed attention), and two forms of prediction influences (extrapolation-based- and decision-based prediction influences). In Study I an automated eye-movement analysis method was developed for a purpose-built eye-tracking sensor, and was successfully validated. This analysis method was further developed, and several new measures of gaze concentration to the road centre area were created. Study II demonstrated that a sharp decrease in the amount of road centre viewing time is accompanied by a dramatic spatial concentration towards the road centre area in returning gaze during visual tasks. During cognitive tasks, a spatial gaze concentration to road centre is also evident; however contrary to visual tasks, road centre viewing time is increased because the eyes are not directed towards an object within the vehicle. Study III found that gaze concentration measures are highly sensitive to driving task demands as well as to visual and auditory in-vehicle tasks. Gaze concentration to the road centre area was found as driving task complexity increased, as shown in differences between rural curved- and straight sections, between rural and motorway road types, and between simulator and field motorways. Further, when task duration was held constant and the in-vehicle visual task became more difficult, drivers looked less at the road centre area ahead, and looked at the display more often, for longer periods, and for more varied durations. In closing, it is shown how this knowledge can be applied to create in-vehicle attention support functions that counteract the effects of inattention.
Gauging Similarity with n -Grams: Language-Independent Categorization of Text (1995)

A language-independent means of gauging topical similarity in unrestricted text is described. The method combines information derived from n-grams (consecutive sequences of n characters) with a simple vector-space technique that makes sorting, categorization, and retrieval feasible in a large multilingual collection of documents. No prior information about document content or language is required. Context, as it applies to document similarity, can be accommodated by a well-defined procedure. When an existing document is used as an exemplar, the completeness and accuracy with which topically related documents are retrieved is comparable to that of the best existing systems. The results of a formal evaluation are discussed, and examples are given using documents in English and Japanese.
Subcellular distribution of native estrogen receptor α and β isoforms in rabbit uterus and ovary (2001)

The association of estrogen receptors with non-nuclear/cytoplasmic compartments in target tissues has been documented. However, limited information is available on the distribution of estrogen receptor isoforms, specially with regard to the newly described beta isotype. The subcellular localization of estrogen receptor alpha and beta isoforms was investigated in rabbit uterus and ovary. Native alpha and beta subtypes were immunodetected using specific antibodies after subjecting the tissue to fractionation by differential centrifugation. The ovary expressed alpha and beta estrogen receptors in predominant association to cytosolic components. However, in the uterus, a substantial proportion of the total estrogen binding capacity and coexpression of the two isoforms was detected in mitochondria and microsomes. The mitochondrial-enriched subfraction represented an important source of 17beta-estradiol binding, where the steroid was recognized in a stereospecific and high affinity manner. The existence of mitochondrial and membrane estrogen binding sites correlated with the presence of estrogen receptor alpha but mainly with estrogen receptor beta proteins. Using macromolecular 17beta-estradiol derivatives in Ligand Blot studies, we could confirm that both alpha and beta isoforms were expressed as the major estrogen binding proteins in the uterus, while estrogen receptor alpha was clearly the dominant isoform in the ovary. Other low molecular weight estrogen receptor alpha-like proteins were found to represent an independent subpopulation of uterine binding sites, expressed to a lesser extent. This differential cellular partitioning of estrogen receptor alpha and beta forms may contribute to the known diversity of 17beta-estradiol effects in target organs. Both estrogen receptor alpha and beta expression levels and cellular localization patterns among tissues, add complexity to the whole estrogen signaling system, in which membrane and mitochondrial events could also be implicated.
MRI study of the changes in crystalline lens shape with accommodation and aging in humans (2011)

Magnetic Resonance Imaging was used to study changes in the crystalline lens and ciliary body with accommodation and aging. Monocular images were obtained in 15 young (19-29 years) and 15 older (60-70 years) emmetropes when viewing at far (6 m) and at individual near points (14.5 to 20.9 cm) in the younger group. With accommodation, lens thickness increased (mean ± 95% CI: 0.33 ± 0.06 mm) by a similar magnitude to the decrease in anterior chamber depth (0.31 ± 0.07 mm) and equatorial diameter (0.32 ± 0.04 mm) with a decrease in the radius of curvature of the posterior lens surface (0.58 ± 0.30 mm). Anterior lens surface shape could not be determined due to the overlapping region with the iris. Ciliary ring diameter decreased (0.44 ± 0.17 mm) with no decrease in circumlental space or forward ciliary body movement. With aging, lens thickness increased (mean ± 95% CI: 0.97 ± 0.24 mm) similar in magnitude to the sum of the decrease in anterior chamber depth (0.45 ± 0.21 mm) and increase in anterior segment depth (0.52 ± 0.23 mm). Equatorial lens diameter increased (0.28 ± 0.23 mm) with no change in the posterior lens surface radius of curvature. Ciliary ring diameter decreased (0.57 ± 0.41 mm) with reduced circumlental space (0.43 ± 0.15 mm) and no forward ciliary body movement. Accommodative changes support the Helmholtz theory of accommodation including an increase in posterior lens surface curvature. Certain aspects of aging changes mimic accommodation.
Low-complexity transform and quantization with 16-bit arithmetic for H.26L (2003)

This paper presents an overview of the latest transform and quantization designs for H.26L. Unlike the popular discrete cosine transform (DCT) used in previous standards, the transforms in H.26L can be computed exactly in integer arithmetic, thus avoiding inverse transform mismatch problems. The new transforms can also be computed without multiplications, just additions and shifts, in 16-bit arithmetic, thus minimizing computational complexity, especially for low-end processors. By using short tables, the new quantization formulas use multiplications but avoid divisions.
The microRNA.org resource: targets and expression (2007)

MicroRNA.org (http://www.microrna.org) is a comprehensive resource of microRNA target predictions and expression profiles. Target predictions are based on a development of the miRanda algorithm which incorporates current biological knowledge on target rules and on the use of an up-to-date compendium of mammalian microRNAs. MicroRNA expression profiles are derived from a comprehensive sequencing project of a large set of mammalian tissues and cell lines of normal and disease origin. Using an improved graphical interface, a user can explore (i) the set of genes that are potentially regulated by a particular microRNA, (ii) the implied cooperativity of multiple microRNAs on a particular mRNA and (iii) microRNA expression profiles in various tissues. To facilitate future updates and development, the microRNA.org database structure and software architecture is flexibly designed to incorporate new expression and target discoveries. The web resource provides users with functional information about the growing number of microRNAs and their interaction with target genes in many species and facilitates novel discoveries in microRNA gene regulation.
First-principles calculations of effective-mass parameters of AlN and GaN (1995)

The electronic band structures of the wurtzite-type AlN and GaN are calculated by using a self-consistent full-potential linearized augmented plane-wave method within the local-density-functional approximation. In order to clarify the electronic properties near the Brillouin-zone (BZ) center and to give an important guideline on the material designs for short-wavelength optical devices, we link the first-principles band calculations with the effective-mass approximation. The electronic properties are analytically studied on the basis of the effective-mass Hamiltonian, where we consider the hexagonal symmetry of the wurtzite structure. The effective-mass parameters, such as electron effective mass, hole effective masses, or, equivalently, the Luttinger-like parameters, crystal-field splitting and spin-orbit splitting, are determined by reproducing the calculated band structures near the BZ center. The obtained results show that the cubic approximation is fairly successful in the analysis for the valence-band structures of the wurtzite-type nitrides. Further, the calculated parameters for GaN are consistent with the observed ones.
Simultaneous assessment of conformation and aggregation of β‐amyloid peptide using electrospray ionization mass spectrometry (1997)

Electrospray ionization mass spectrometry was used to study conformation and aggregation of the synthetic beta-amyloid peptide, residues 1-40 (betaA4), as a function of concentration and sample aging. All mass spectra showed a major envelope of peaks corresponding to charge states of 7-3 of the monomeric form of betaA4. In addition, weaker envelopes of peaks corresponding to charge states of dimeric, trimeric, and tetrameric betaA4 species were seen under gentle ionization conditions. The average charge state of the envelope associated with the monomeric form decreased by ca. 0.5 z as samples were aged, indicating that the relatively open form (likely random coil) of the peptide was modified into the more compact form (likely beta-sheet) as a function of sample aging. The aggregate forms became weaker and ultimately were absent both in the more dilute solutions and in aged aliquots of the concentrated sample. These aggregates were interpreted as assemblies of the random coil form. We interpret our inability to see an ion envelope that can be associated with aggregates of the beta-sheet form to be a consequence of the presumed very compact nature of this form. A model for the formation of betaA4 fibrils is proposed and discussed.
The Role of the State (2002)

Abstract Public policy requires the state to make distributional judgements, but there are moral constraints on its authority. Individuals’ rights as well as state rights have evolved through social interaction. General human rights are the corollary of wrongs, things that neither the state nor any person may do to them. The acquisition of property rights is discussed. It is concluded paradoxically that although the state has a general obligation to protect property, it also has a right to take it away from some to give to others.
High-speed generalized distributed-amplifier-based transversal-filter topology for optical communication systems (1997)

The use of a distributed-amplifier-based transversal filter as a signal processor for high-rate pulse shaping/filtering is discussed. By showing the analogy between transversal filters and distributed-amplifier topologies, schemes demonstrating practical approaches for the design of such filters are explored. The practicability of one of the different schemes is illustrated via an implemented design. A four-stage 10-Gb/s distributed-amplifier monolithic microwave integrated circuit (MMIC) is constructed using one of the developed schemes and its behavior is discussed.
Possible mechanisms of emphysema in smokers: cigarette smoke condensate suppresses protease inhibition in vitro. (1977)

To study the possible role of suppression of antiproteases by cigarette smoke in the pathogenesis of pulmonary emphysema in smokers, the following experiments were carried out. Elastin-agarose gels were impregnated with cigarette smoke condensate dissolved in dimethyl sulfoxide or with the solvent alone. This procedure affected neither local pH of the gel nor subsequent physical behavior (diffusion) of antiprotease. Elastases from various sources were then allowed to diffuse through the impregnated gels toward a counter-diffusing sample of antiprotease. The effectiveness of the antiprotease in blocking the enzyme was determined from the extent of elastolysis. The elastin substrates used included beef ligament elastin and dog lung elastin. The enzymes used were porcine pancreatic elastase and pure human leukocyte elastase. The antiproteases tested included human serum, pure human a1-antitrypsin, human bronchopulmonary lavage fluid, and a synthetic chloromethyl ketone inactivator of elastase. The results showed that whole, unfractionated cigarette smoke condensate suppressed all of the antiproteases tested, except for the chloromethyl ketone. These observations are discussed in terms of the protease-pathogenesis model of pulmonary emphysema.
A comparison of algorithms for maximum entropy parameter estimation (2002)

Conditional maximum entropy (ME) models provide a general purpose machine learning technique which has been successfully applied to fields as diverse as computer vision and econometrics, and which is used for a wide variety of classification problems in natural language processing. However, the flexibility of ME models is not without cost. While parameter estimation for ME models is conceptually straightforward, in practice ME models for typical natural language tasks are very large, and may well contain many thousands of free parameters. In this paper, we consider a number of algorithms for estimating the parameters of ME models, including iterative scaling, gradient ascent, conjugate gradient, and variable metric methods. Sur-prisingly, the standardly used iterative scaling algorithms perform quite poorly in comparison to the others, and for all of the test problems, a limited-memory variable metric algorithm outperformed the other choices.
Analysis of N-terminal processing of hepatitis C virus nonstructural protein 2 (1994)

We determined the partial amino (N)-terminal amino acid sequence of hepatitis C virus p21 (nonstructural protein 2 [NS2]). Cleavage at the p21 (NS2) N terminus depended on the presence of microsomal membranes. The amino-terminal position of p21 (NS2) was assigned to amino acid 810 of the hepatitis C virus strain IIJ precursor polyprotein. Mutation of the alanine residue at position P1 of the putative cleavage site inhibited membrane-dependent processing. This alteration in processing together with the fact that hydrophobic amino acid residues are clustered upstream of the putative cleavage site suggested the involvement of a signal peptidase(s) in the cleavage. Furthermore, mutation analysis of this possible cleavage site revealed the presence of another microsome membrane-dependent cleavage site upstream of the N terminus of p21 (NS2).
Fast and Reversible Surface Redox Reaction in Nanocrystalline Vanadium Nitride Supercapacitors (2006)

Modification of the surface chemistry of nanocrystalline VN yields a new class of supercapacitors that deliver an impressive specific capacitance. The creation of surface nanolayers of VOx (poor electronic conductivity) on the electronically conductive nanocrystalline VN shown in the figure and on the cover gives rise to a series of reversible redox reactions that are thought to be responsible for the high capacitance. Application of the concept to other transition metals is expected to broaden the scope of supercapacitor materials. Supporting information for this article is available on the WWW under http://www.wiley-vch.de/contents/jc_2089/2006/c2471_s.pdf or from the author. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
Backward compatible wideband voice over narrowband low-resolution media (2004)

This paper proposes a scheme for transmitting or storing a wideband version of voice (up to 7 kHz) in a narrowband channel or medium (up to 3.4 kHz) with a low resolution data format. The scheme is fully backward compatible; a conventional receiver, without any decoding mechanism, can still access a narrowband version of the wideband voice. The proposed scheme can be applied where a high quality wideband voice is needed but the physical capacity is limited. Examples are voice-over-IP, digital private branch exchange, as well as storage and playback. An audio demonstration is given in the paper.
Lenalidomide and Dexamethasone in Transplant-Ineligible Patients with Myeloma (2014)

BACKGROUND: The combination melphalan-prednisone-thalidomide (MPT) is considered a standard therapy for patients with myeloma who are ineligible for stem-cell transplantation. However, emerging data on the use of lenalidomide and low-dose dexamethasone warrant a prospective comparison of the two approaches. METHODS: We randomly assigned 1623 patients to lenalidomide and dexamethasone in 28-day cycles until disease progression (535 patients), to the same combination for 72 weeks (18 cycles; 541 patients), or to MPT for 72 weeks (547 patients). The primary end point was progression-free survival with continuous lenalidomide-dexamethasone versus MPT. RESULTS: The median progression-free survival was 25.5 months with continuous lenalidomide-dexamethasone, 20.7 months with 18 cycles of lenalidomide-dexamethasone, and 21.2 months with MPT (hazard ratio for the risk of progression or death, 0.72 for continuous lenalidomide-dexamethasone vs. MPT and 0.70 for continuous lenalidomide-dexamethasone vs. 18 cycles of lenalidomide-dexamethasone; P<0.001 for both comparisons). Continuous lenalidomide-dexamethasone was superior to MPT for all secondary efficacy end points, including overall survival (at the interim analysis). Overall survival at 4 years was 59% with continuous lenalidomide-dexamethasone, 56% with 18 cycles of lenalidomide-dexamethasone, and 51% with MPT. Grade 3 or 4 adverse events were somewhat less frequent with continuous lenalidomide-dexamethasone than with MPT (70% vs. 78%). As compared with MPT, continuous lenalidomide-dexamethasone was associated with fewer hematologic and neurologic toxic events, a moderate increase in infections, and fewer second primary hematologic cancers. CONCLUSIONS: As compared with MPT, continuous lenalidomide-dexamethasone given until disease progression was associated with a significant improvement in progression-free survival, with an overall survival benefit at the interim analysis, among patients with newly diagnosed multiple myeloma who were ineligible for stem-cell transplantation. (Funded by Intergroupe, Francophone du Myélome and Celgene; FIRST ClinicalTrials.gov number, NCT00689936; European Union Drug Regulating Authorities Clinical Trials number, 2007-004823-39.).