gebhart/patrepeval huggingface dataset:
Isolation and characterization of a gene encoding a Chlamydia pneumoniae 76-kilodalton protein containing a species-specific epitope (1994)

Chlamydia pneumoniae is a human respiratory pathogen. Unlike the other two Chlamydia species, no species-specific antigen has been defined for C. pneumoniae. An immunoreactive clone containing a 0.8-kb fragment was isolated from a C. pneumoniae (AR-39) genomic library by using anti-C. pneumoniae rabbit immune serum. By Southern hybridization analysis of chromosomal digests of the different Chlamydia spp., the 0.8-kb fragment was shown to react specifically with C. pneumoniae. Subcloning of this fragment into the pGEX-1 lambda T expression vector resulted in the expression of a 62-kDa fusion protein. This fusion protein as well as the cleaved C. pneumoniae peptide were recognized by anti-C. pneumoniae rabbit immune serum, while the glutathione S-transferase moiety was not recognized. The fusion protein was used to produce monospecific rabbit antiserum. This antiserum was shown to react with a 76-kDa protein in all C. pneumoniae isolates tested, specifically recognize C. pneumoniae inclusions in tissue culture, and neutralize infectivity of C. pneumoniae in cell culture. No reactivity was observed with Chlamydia trachomatis or Chlamydia psittaci. To isolate the entire coding sequence of the 76-kDa protein, two partially overlapping fragments of C. pneumoniae DNA, a 3.2-kb HindIII fragment and a 1.2-kb PvuII fragment, were isolated, cloned, and sequenced. No significant sequence similarity was found with any previously reported nucleotide or amino acid sequence of the other Chlamydia species. This C. pneumoniae protein containing a species-specific epitope could play a role in pathogenesis and may be useful as a diagnostic tool.
Transgenic potato ( Solanum tuberosum ) tubers synthesize the full spectrum of inulin molecules naturally occurring in globe artichoke ( Cynara scolymus ) roots (2000)

The ability to synthesize high molecular weight inulin was transferred to potato plants via constitutive expression of the 1-SST (sucrose:sucrose 1-fructosyltransferase) and the 1-FFT (fructan: fructan 1-fructosyltransferase) genes of globe artichoke (Cynara scolymus). The fructan pattern of tubers from transgenic potato plants represents the full spectrum of inulin molecules present in artichoke roots as shown by high-performance anion exchange chromatography, as well as size exclusion chromatography. These results demonstrate in planta that the enzymes sucrose:sucrose 1-fructosyltransferase and fructan:fructan 1-fructosyltransferase are sufficient to synthesize inulin molecules of all chain lengths naturally occurring in a given plant species. Inulin made up 5% of the dry weight of transgenic tubers, and a low level of fructan production also was observed in fully expanded leaves. Although inulin accumulation did not influence the sucrose concentration in leaves or tubers, a reduction in starch content occurred in transgenic tubers, indicating that inulin synthesis did not increase the storage capacity of the tubers.
Total synthesis of hemibrevetoxin B (1992)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTTotal synthesis of hemibrevetoxin BK. C. Nicolaou, K. Raja Reddy, Golfo Skokotas, Fuminori Sato, and Xiao Yi XiaoCite this: J. Am. Chem. Soc. 1992, 114, 20, 7935–7936Publication Date (Print):September 1, 1992Publication History Published online1 May 2002Published inissue 1 September 1992https://pubs.acs.org/doi/10.1021/ja00046a063https://doi.org/10.1021/ja00046a063research-articleACS PublicationsRequest reuse permissionsArticle Views939Altmetric-Citations68LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information Get e-Alerts
Blood Pressure Control: A Comparison of Feedback and Instructions Using Pulse Wave Velocity Measurements (1976)

ABSTRACT A comparison was made between blood pressure changes with exteroceptive feedback and simple instructions. Twenty subjects were instructed either to raise or lower pressure for four sessions, while a further 20 were allowed to view an analogue visual display of mean arterial pressure. Pressure changes were continuously monitored with the pulse wave velocity method. When changes were analyzed from the initial baseline, both groups showed divergence between Increase and Decrease over trials, but feedback enhanced control in Increase only. On assessment from the running baseline, feedback control was superior in both direction conditions. This difference may In due to interaction between running baseline changes and experimental conditions. Control by feedback groups deteriorated when feedback was withdrawn. Modifications were accompanied by alterations in heart rate, respiratory activity and movement, although the association was of a gross nature only, being more prominent in increase conditions.
Apolipoprotein E and functional recovery from brain injury following postacute rehabilitation (2000)

The data suggest that the presence of the lipoprotein APOE epsilon4 adversely affects rehabilitation outcome for traumatic brain injury survivors.
Field Expelriments on Real-Time 1-Gbps High-Speed Packet Transmission in MIMO-OFDM Broadband Packet Radio Access (2006)

This paper presents field experimental results on real-time 1-Gbps packet transmission using antenna-dependent adaptive modulation and channel coding (AMC) with 4-by-4 MIMO multiplexing using maximum likelihood detection employing QR decomposition and the M-algorithm (QRM-MLD) with adaptive selection of the surviving symbol replica candidates (ASESS) in the downlink orthogonal frequency division multiplexing (OFDM) radio access. The field experiments, which are conducted at the average moving speed of 30 km/h, show that the real-time packet transmission of greater than 1 Gbps in a 100-MHz channel bandwidth (i.e., 10 bits/second/Hz) is achieved at the average received signal-to-interference plus background noise power ratio (SINR) of approximately 13.5 dB using 16QAM modulation and turbo coding with the coding rate of 8/9, The results also show that the antenna-dependent AMC is very beneficial to improve the measured throughput in a real propagation channel environments, where the average received power associated with each transmitted signal varies with the difference of greater than approximately 6 dB. Finally, we show that the measured throughput of greater than 1 Gbps is achieved employing antenna-dependent AMC at the probability of approximately 98% in a measurement course, where the maximum distance from the cell site was approximately 300 m with the respective transmitter and receiver antenna spacings of 1.5 m and 40 cm with the total transmission power of 10 W
Fiber architecture of the left ventricular wall: An asymptotic analysis (1989)

Abstract The goal of this paper is to derive the fiber architecture of the left ventricle from first principles. The principles used are (i) mechanical equilibrium, (ii) a stress tensor that is the sum of a hydrostatic pressure and a fiber stress, (iii) the assumption that fiber tubes have constant cross‐sectional area along their length, (iv) axial symmetry, and (v) the approximation that the thickness of the ventricular wall is small in comparison with the other wall dimensions. From these hypotheses, it is deduced that the cardiac muscle fibers are approximate geodesics on a nested family of toroidal surfaces centered on a degenerate torus in the equatorial plane of the heart. (Exact geodesics are ruled out by the theory.) Formulae are derived for the fiber surfaces and the fiber‐angle distribution through the wall, and a differential equation is derived for the shape of the middle surface of the left ventricle. The results are in substantial agreement with experimental observations.
THE UNAVAILABILITY TO CORPORATIONS OF THE PRIVILEGE AGAINST SELF-INCRIMINATION: A COMPARATIVE EXAMINATION (1996)

Based on EPA v. Caltex, High Court of Australia
Adiponectin and metformin additively attenuate IL1β-induced malignant potential of colon cancer (2013)

Both adiponectin (AD) and metformin (Met) have been proposed to downregulate cell proliferation of colon cancer cells, but whether their effect might be additive has not been studied to date. Genetic studies in humans have suggested an important role for interleukin 1β (IL1β) in cancer pathogenesis. Direct evidence that IL1β contributes to the development of colon cancer has not yet been fully confirmed and no previous studies have evaluated how IL1β may interact with AD and/or Met to regulate malignant potential and intracellular signaling pathways in human and mouse colon cancer cells. We conducted in vitro studies using human (LoVo) and mouse (MCA38) colon cancer cell lines to evaluate whether AD and Met alone or in combination may antagonize IL1β-regulated malignant potential in human and mouse colon cancer cell lines. IL1β increased malignant potential and regulated the expression of tumor suppressor (p53) and cell cycle regulatory genes (p21, p27, and cyclin E2) in human and mouse colon cancer cell lines. These effects were reversed by co-administration of AD and/or Met and were additively altered by AD and Met in combination in a STAT3- and AMPK/LKB1-dependent manner. We also observed using fluorescence activated cell sorter analysis that IL1β-regulated cell cycle progression is altered by AD and Met alone or in combination. Our novel mechanistic studies provide evidence for an important role for IL1β in colon cancer and suggest that AD and/or Met might be useful agents in the management or chemoprevention of IL1β-induced colon carcinogenesis.
Recombinant Core Streptavidins (1995)

Two recombinant core streptavidins were designed and characterized to understand the role of the terminal sequences, present in naturally truncated core streptavidins, in the properties of streptavidin. One recombinant core streptavidin, Stv-25, has an amino acid sequence very similar to natural core streptavidins. The other recombinant molecule, Stv-13, has further truncation of the terminal residues and consists essentially of only the beta-barrel structure characteristic of streptavidin. These recombinant core streptavidins are tetrameric and bind four biotins/molecule, as does natural streptavidin. The solubility characteristics of Stv-13, determined by varying the concentration of ammonium sulfate or ethanol, were almost the same as those of Stv-25 and natural core streptavidin. However, Stv-13 showed an enhanced structural stability compared with Stv-25 and natural core streptavidin. For example, Stv-13 retained greater than 80% of its biotin binding ability after incubation in 6 M guanidine hydrochloride at pH 1.5, under which conditions, Stv-25 and natural core streptavidin retained only about 20% of their biotin binding ability. In addition, Stv-13 showed higher accessibility to biotinylated DNA than natural core streptavidin. Apparently, the terminal regions, present on the surface of natural core streptavidin, spatially hinder biotinylated macromolecules from approaching the biotin binding sites.
Fluorescence Enhancement from Self-Assembled Aggregates:  Substituent Effects on Self-Assembly of Azobenzenes (2006)

We have found for the first time significant substituent effects on the light-driven self-assembly of para-substituted azobenzene derivatives and the resulting fluorescence enhancement. The unusual fluorescence enhancement is attributed to the light-driven self-assembly of cis-azobenzenes showing (1) sufficient lifetime and (2) a larger dipole moment.
Affinity capillary electrophoresis: A physical‐organic tool for studying interactions in biomolecular recognition (1998)

Affinity capillary electrophoresis (ACE) is a technique that is used to measure the binding affinity of receptors to neutral and charged ligands. ACE experiments are based on differences in the values of electrophoretic mobility of free and bound receptor. Scatchard analysis of the fraction of bound receptor, at equilibrium, as a function of the concentration of free ligand yields the dissociation constant of the receptor-ligand complex. ACE experiments are most conveniently performed on fused silica capillaries using a negatively charged receptor (molecular mass < 50 kDa) and increasing concentrations of a low molecular weight, charged ligand in the running buffer. ACE experiments that involve high molecular weight receptors may require the use of running buffers containing zwitterionic additives to prevent the receptors from adsorbing appreciably to the wall of the capillary. This review emphasizes ACE experiments performed with two model systems: bovine carbonic anhydrase II (BCA II) with arylsulfonamide ligands and vancomycin (Van), a glycopeptide antibiotic, with D-Ala-D-Ala (DADA)-based peptidyl ligands. Dissociation constants determined from ACE experiments performed with charged receptors and ligands can often be rationalized using electrostatic arguments. The combination of differently charged derivatives of proteins - protein charge ladders - and ACE is a physical-organic tool that is used to investigate electrostatic effects. Variations of ACE experiments have been used to estimate the charge of Van and of proteins in solution, and to determine the effect of the association of Van to Ac2KDADA on the value of pKa of its N-terminal amino group.
Pulse Inversion Techniques in Ultrasonic Nonlinear Imaging (2005)

Pulse inversion (PI) technique plays an important role in ultrasonic nonlinear imaging. For tissue imaging, PI technique provides suppression of spectral leakage and, thus, produces better image contrast. For contrast imaging, contrast between the agents and surrounding tissues are also enhanced with this technique by distinguishing nonlinear microbubbles from the background in either Doppler domain or radiofrequency domain. This paper reviews the theoretical backgrounds and relevant issues of the PI technique. Improvements in image contrast with the PI technique in both tissue harmonic imaging and contrast harmonic imaging are discussed in detail. In addition, potential motion artifacts and related contrast degradation are also included.
The use of convalescent plasma therapy and remdesivir in the successful management of a critically ill obstetric patient with novel coronavirus 2019 infection: A case report (2020)

Remdesivir is a novel therapeutic with known activity against SARS CoV-2 and related coronaviruses. Remdesivir, as well as convalescent plasma therapy, are currently under investigation as potential therapies for patients with Coronavirus Disease 19 (COVID-19). In this case report we summarize the use of convalescent plasma therapy and then remdesivir as a late addition in the treatment of a critically ill obstetric patient with COVID-19. The patient subsequently improved, was extubated 5 days after initiation of remdesivir, was transitioned to room air 24 h later, and discharged at the completion of remdesivir therapy.
Modeling of the Adsorption of Organic Compounds on Polymeric Nanofiltration Membranes in Solutions Containing Two Compounds (2005)

The adsorption of organic compounds in aqueous solution on polymeric nanofiltration membranes is studied; this process is one of the most important fouling mechanisms influencing the flux and retention behavior of nanofiltration membranes. It is shown that the adsorption of dissolved organic compounds on polymeric nanofiltration membranes is comparable to that on activated carbon. Freundlich and Langmuir isotherms are used to describe the relation between the adsorbed mass on the membrane and the equilibrium concentration of the organic compound in a single-compound solution. Based on these results, three models for the adsorption of solutions containing several compounds [i.e., the simple competitive adsorption model (SCAM), the model of Jain-Snoeyinck, and the model of Butler-Ockrent] were used to predict the adsorption behavior of an organic compound in an aqueous solution containing two compounds. The results of the three models were compared to experimental observations. It is shown that the SCAM allows a good prediction of the adsorption behavior.
Characterization of the Heme and Pyridoxal Phosphate Cofactors of Human Cystathionine β-Synthase Reveals Nonequivalent Active Sites (1999)

Cystathionine beta-synthase is an unusual enzyme that requires the cofactors heme and pyridoxal phosphate (PLP) to catalyze the condensation of homocysteine and serine to generate cystathionine. This transsulfuration reaction represents one of two major cellular routes for detoxification of homocysteine, which is a risk factor for atherosclerosis. While the beta-replacement reaction catalyzed by this enzyme suggests a role for the pyridoxal phosphate, the role of the heme is uncertain. In this study we have examined the effect of changing one of the ligands to the heme on the activity of the enzyme. Binding of carbon monooxide results in the displacement of a thiolate ligand to the ferrous heme, and is accompanied by complete loss of cystathionine beta-synthase activity. Furthermore, inhibition by CO is competitive with respect to homocysteine, providing the first indication that the homocysteine binding site is in the proximity of heme. Binding of both CO and cyanide to ferrous cystathionine beta-synthase occurs in two distinct isotherms and indicates that the hemes are nonequivalent. We have employed fluorescence spectroscopy to characterize the bound PLP and its interaction with serine. PLP bound to cystathionine beta-synthase is weakly fluorescent and exists as a mixture of the protonated and unprotonated tautomers. Reaction with hydroxylamine releases the oxime and greatly enhances the associated fluorescence. Binding of serine is accompanied by a shift to the unprotonated tautomer of the external aldimine as well as the appearance of a new fluorescent species at approximately 400 nm that could be due to the aminoacrylate or to a gemdiamine intermediate. These data provide the first characterization of the PLP bound to cystathionine beta-synthase. Treatment of cystathionine beta-synthase with hydroxylamine releases two PLPs after 1 day and results in complete loss of activity. Incubation for an additional 3-4 days results in the release of two more PLPs. These data lead us to revise the PLP stoichiometry to 4 per tetramer, and to the conclusion that the heme and PLP sites in cystathionine beta-synthase are nonequivalent.
Phase-Dependent Treatment of Delayed Sleep Phase Syndrome with Melatonin (2005)

These results indicate that melatonin advances the circadian clock and sleep in patients with DSPS in a phase-dependent manner. This is the first study that reports a relationship between timing of melatonin administration and phase changes in patients with DSPS.
Wave front control systems based on modal liquid crystal lenses (2000)

We describe two electro-optical systems for adaptive focusing of linearly polarized light. The aperture size is 5 mm and the focal length can be varied from 1 to 4 m for wavelengths from 0.663 to 0.85 μm. The first is a commercially available system including a PC compatible control unit and software, and an adaptive liquid crystal lens. The other is an experimental system consisting of a self-contained unit with an autonomous power supply and an adaptive lens. The safe operating limit in the visible region is 10 W/cm2 with a transmission of 70% without antireflection coating. The switching speed of focus variation from 2 to 1 m and from 1 to 2 m is 780 and 860 ms, respectively. The operating principles of the spherical adaptive lenses and their control units are described. Phase aberrations of the lenses were measured by a Zygo phase shifting interferometer, and the results are presented.
Promoter analysis of influenza virus RNA polymerase (1989)

Influenza virus polymerase, which was prepared depleted of viral RNA, was used to copy small RNA templates prepared from plasmid-encoded sequences. Template constructions containing only the 3' end of genomic RNA were shown to be efficiently copied, indicating that the promoter lay solely within the 15-nucleotide 3' terminus. Sequences not specific for the influenza virus termini were not copied, and, surprisingly, RNAs containing termini identical to those from plus-sense cRNA were copied at low levels. The specificity for recognition of the virus sense promoter was further defined by site-specific mutagenesis. It was also found that increased levels of viral protein were required in order to catalyze both the cap endonuclease-primed and primer-free RNA synthesis from these model templates, as well as from genomic-length RNAs. This finding indicates that the reconstituted system has catalytic properties very similar to those of native viral ribonucleoprotein complexes.
Preparation of dry powder dispersions for non‐viral gene delivery by freeze‐drying and spray‐drying (2002)

Spray-drying has utility for producing stable, efficient and potentially respirable non-viral dry powder systems for respiratory gene delivery.
Immobilization of Soluble Fibrin on Factor XIIIa-Coated Polystyrene Beads Mediated by N-Terminal Fibronectin Fragments. II. Demonstration of Covalent Adducts of Fibrin Peptide Chains and Fibronectin Fragments (1991)

Previous experiments had shown that the free N-terminal fibronectin 30-kDa-domain mediates binding of soluble 125I-fibrin to transamidase-coated polystyrene beads (Hörmann et al., Biol. Chem. Hoppe-Seyler 368, 669-674, 1987). Now, the formation of covalent adducts of the N-terminal fragment with fibrin peptide chains is demonstrated. Binding of soluble 125I-fibrin was performed in presence of N-terminal fibronectin 30-kDa or 70-kDa fragments. The material adsorbed was removed from the beads under reducing conditions and analysed by dodecylsulfate gel electrophoresis followed by autoradiography. The 30-kDa fragment gave rise to bands of 80 kDa and 180-200 kDa which were lacking in the products of the 70-kDa compound. Instead, they showed bands at 120 kDa and ca. 280 kDa. Evidently, those bands represented covalent adducts of fibrin peptide chains or their dimers with the 30-kDa or the 70-kDa fragment, respectively. In addition, dimeric gamma-chains and alpha-chain polymers of fibrin were present indicating partial polymerization of bead-attached fibrin.