gebhart/patrepeval huggingface dataset:
Obstructive sleep apnea associated with cerebral hypoxemia and death (2004)

An increase in the arousal threshold may predispose critically ill patients with obstructive sleep apnea (OSA) to prolonged apneas and death during sleep. We report two cases in whom polysomnographically documented OSA resulted in EEG changes compatible with cerebral hypoxemia with subsequent respective transient encephalopathy in one instance and death in the other.
Carboxyl‐terminal structure of basic fibroblast growth factor significantly contributes to its affinity for heparin (1990)

The carboxyl-terminal sequence of basic fibroblast growth factor (bFGF) is rich in basic amino acid residues, a common characteristic amongst fibroblast growth factors, and is considered to contribute greatly to the binding to negatively charged extracellular matrixes such as heparin. To study the relationship between the affinity for heparin and the carboxyl-terminal structure of bFGF, amino- or carboxyl-terminal truncated molecules were produced in Escherichia coli using recombinant DNA techniques. These terminally truncated bFGFs were applied to a heparin-affinity HPLC column. Truncation of more than six amino acid residues from the carboxyl-terminal made the bFGF produced in E. coli markedly difficult to solubilize and weakened its affinity for heparin, though bFGF having up to 46 amino acids removed showed significant stimulation of the DNA synthesis of BALB/c3T3 cells. This stimulation of the DNA synthesis was also recognized by the bFGF having 40 amino acids removed from its amino-terminal, while the affinity of this peptide for heparin has been shown to be equal to that of the mature bFGF (146 amino acids). These results show that the affinity of bFGF for heparin depends significantly on its carboxyl-terminal structure and that the essential part for receptor binding is present between Asp41 and Ser100. Moreover, it suggests that the Phe139Leu140Pro141, present in all members of the FGF family, contributes greatly to the stable structure of the intact molecule.
Generalized Chou-Yang Model for p(bar p)p and Λ()p Elastic Scattering at High Energies (1988)

The various characteristics of pp and p elastic scattering at high energies are explained by using the generalized Chou-Yang model which takes into consideration the anisotropic scattering of objects constituting colliding particles. The model is also used to extract the form factor and radius of the Λ particle.
Serogroups and biotypes among beta-hemolytic streptococci of canine origin (1980)

A study of hemolytic streptococci from clinical infections in dogs revealed the presence of four serogroups, with one to four biotypes in each, based on carbohydrate fermentation patterns. Of 254 isolates tested, 206 belonged to Lancefield group G, 30 to group C, 7 to group E, and 1 to group A. Ten isolates could not be grouped. Reactions on the three key carbohydrates, lactose, trehalose, and sorbitol, revealed four biotypes each in groups G and C, and two in group E and among the ungroupable cultures. The most common pattern, seen in 154 cultures, was lactose fermentation with no action on trehalose and sorbitol, and corresponded to that described for Streptococcus canis (Stafseth et al., J. Am. Vet. Med. Assoc. 90:769-781, 1937). Most of the strains originated from skin, subcutaneous and wound infections, genitourinary lesions, otitis externa, and respiratory disease. Data suggest that group G streptococci may be preferentially parasites of the urogenital tract.
(I2)n Encapsulation inside TiO2:  A Way To Tune Photoactivity in the Visible Region (2007)

We report on the synthesis of nanovoid-structured TiO(2) material via a sol-gel route using titanium isopropoxide as precursor. The nanovoids are formed during the thermal treatment in air at 773 K. The surfaces of internal cavities are populated by the partial oxidation products of the organic part of the Ti precursor (CO(2), hydrogen carbonates, and residual isopropoxide groups). The thermal treatment in air at 773 K allows the maintainence, in the internal voids, of the encapsulated species. Addition of iodine in the synthesis procedure results in a new nanovoid-structured titanium oxide able to absorb light in the whole visible part of the electromagnetic spectrum. The origin of this absorption is attributed to the presence of (I(2))(n) adducts encapsulated in the nanocavities. These species coexist with partial combustion products of isopropoxide groups. Due to the protection of the TiO(2) walls, the (I(2))(n) adducts are not destroyed by thermal treatments in air. We have investigated whether the electron promoted in the excited state of the dye molecule (upon absorption of visible light from the (I(2))(n) adducts) can be injected into either the TiO(2) conduction band or some titanium-localized acceptor, followed by migration of the injected electron to the surface where it reduces adsorbed organic molecules. Preliminarily experiments conducted with sunlight show that the surface-specific efficiency of this process, tested by following the degradation of methylene blue, is about 10 times higher than that of the P25 commercial TiO(2) photocatalyst.
Alternative delivery systems for peptides and proteins as drugs. (1988)

The emergence of recombinant DNA technology has resulted in the large-scale production of a myriad of genetically engineered proteins and peptides, making many of them available for the first time for potential use as therapeutic entities. In addition, increased knowledge in the area of peptide/polypeptide hormones has resulted in an expansion of research efforts utilizing peptide synthetic chemistry, aimed toward developing novel therapeutic peptide drugs. Proteins and peptides cannot readily be administered by the conventional oral route, and thus alternative delivery methods to circumvent the necessity of frequent injections are being explored. This article reviews the current state-of-the-art technology of such methodologies, encompassing localized administration, administration to various body cavities (i.e., nasal, rectal, etc.), as well as controlled-release injectable or implantable systems. These different approaches result in quite different pharmacokinetics that may in part dictate which approach is best suited for a particular protein or peptide.
The solid state structure and reactivity of NbCl5·(N,N′-dicyclohexylurea) in solution: evidence for co-ordinated urea dehydration to the relevant carbodiimide (2010)

NbCl(5) x (N,N'-dicyclohexylurea) 1a owns a distorted octahedral structure due to intramolecular NH...Cl bonding. The unit cell contains four units which are intermolecularly NH...Cl and NH...N bonded. An extended intramolecular network of H-bonding (N-H...Cl, CH...Cl, CH...N) causes the 3D self assembling of the units. Upon addition of base, the HCl release from 1a is observed with the transfer to Nb of the O-atom of the carbonylic function of the starting urea which is converted into the relevant carbodiimide CyN=C=NCy 4. The latter is quantitatively released by adding an excess of NEt(3) at 308 K (py and DBU are less efficient) with formation of the known NbOCl(3)(NEt(3))(2), isolated in quantitative yield. Increasing the temperature leads to a loss in selectivity as the formed DCC undergoes further reactions. At 350 K, the isocyanate CyN=C=O has been isolated in 60% yield besides a mixture of Nb-complexes. DFT calculations have been coupled to IR and NMR experiments for characterizing possible reaction intermediates and the behaviour of 1a. Several other MCl(x) species (ScCl(3), YCl(3), LaCl(3), TiCl(4), TaCl(5), AlCl(3), SnCl(4)) have been shown to be able to co-ordinate DCU but not all of them promote the conversion of urea into DCC.
Flutamide withdrawal syndrome: its impact on clinical trials in hormone-refractory prostate cancer. (1993)

Discontinuation of flutamide was associated with a significant decrease in PSA values in 10 of 25 patients (40%; 95% confidence interval, 21% to 59%) and clinical improvement in a subset of patients who had an initial response, but later progressive disease on combined androgen blockade. A trial of flutamide withdrawal should be considered in patients progressing on total androgen blockade before the initiation of more toxic therapies. It is likely that flutamide withdrawal has contributed to the observed responses in phase II trials of both second-line hormonal therapies and new cytotoxic agents. Future phase II trials in hormone-refractory prostatic cancer must control for this observation, and insure that progression off flutamide is documented before initiation of alternative treatment.
The aryl hydrocarbon receptor (AhR) in the regulation of cell-cell contact and tumor growth (2010)

The aryl hydrocarbon receptor (AhR) is a ligand-dependent transcription factor, which is activated by a large group of environmental pollutants including polycyclic aromatic hydrocarbons, dioxins and planar polychlorinated biphenyls. Ligand binding leads to dimerization of the AhR with aryl hydrocarbon receptor nuclear translocator and transcriptional activation of several xenobiotic phase I and phase II metabolizing enzymes, such as cytochrome P4501A1 and glutathione-S-transferase, respectively. Since phase I enzymes convert inert carcinogens to active genotoxins, the AhR plays a key role in tumor initiation. Besides this classical route, the AhR mediates tumor promotion and recent evidence suggests that the AhR also plays a role in tumor progression. To date, no mechanistic link could be established between the canonical pathway involving xenobiotic metabolism and AhR-dependent tumor promotion and progression. A hallmark of tumor promotion is unbalanced proliferation, whereas tumor progression is characterized by dedifferentiation, increased motility and metastasis of tumor cells. Tumor progression and presumably also tumor promotion are triggered by loss of cell-cell contact. Cell-cell contact is known to be a critical regulator of proliferation, differentiation and cell motility in vitro and in vivo. Increasing evidence suggests that activation of the AhR may lead to deregulation of cell-cell contact, thereby inducing unbalanced proliferation, dedifferentiation and enhanced motility. In line with this is the finding of increased AhR expression and malignancy in some animal and human cancers. Here, we summarize our current knowledge on non-canonical AhR-driven pathways being involved in deregulation of cell-cell contact and discuss the data with respect to tumor initiation, promotion and progression.
Stem Cell Research (2005)

Most tissues in complex metazoans contain a rare subset of cells that, at the single-cell level, can self-renew and also give rise to mature daughter cells. Such stem cells likely in development build tissues and are retained in adult life to regenerate them. Cancers and leukemias are apparently not an exception: rare leukemia stem cells and cancer stem cells have been isolated that contain all of the tumorigenicity of the whole tumor, and it is their properties that will guide future therapies. None of this was apparent just 20 years ago, yet this kind of stem cell thinking already provides new perspectives in medical science and could usher in new therapies. Today, political, religious, and ethical issues surround embryonic stem cell and patient-specific pluripotent stem cell research and are center stage in the attempts by governments to ban these fields for discovery and potential therapies. These interventions require physicians and physician-scientists to determine for themselves whether patient welfare or personal ethics will dominate in their practices, and whether all aspects of stem cell research can be pursued in a safe and regulated fashion.
266 IN VITRO-DERIVED EMBRYO PRODUCTION WITH SEXED ANDUNSEXED SEMEN FROM DIFFERENT BULLS (2004)

The production of pre-sex-selected calves by in vitro fertilization (IVF), using sexed semen, does show some benefits due to the small quantity of sperms needed for the process as compared to other reproductive technologies. The objective of this study was to determine differences among bulls and sperm concentrations in embryo development with sexed and unsexed semen. Follicles ranging from 2 to 6 mm in diameter were aspirated from slaughterhouse ovaries. COC were selected and matured in groups of maximum of 30 in 1.8 mL of TCM-199, supplemented with 10% fetal calf serum, 0.01 U mL-1 bFSH, 0.01 U mL-1 bLH and 10 µL mL-1 penicillin-streptomycin for 24 h at 38.5°C. Fertilization (Day 0) was carried out in micro-drops (50 µL) with TALP-FERT medium containing PHE (3 µg mL-1 penicillamine, 11 µg mL-1 hypotaurine and 0.18 µg mL-1 epinephrine), 10 µL mL-1 non-essential amino acid and 2 µg mL-1 heparin. Frozen/thawed sexed (female) and non-sexed sperms from five bulls were selected in a discontinuous percoll gradient. Sperm concentration was 1 × 106 for non-sexed semen and 1 × 106 or 2 × 106 for sexed semen. After 18–20 h, presumptive zygotes were denuded and cultured in groups of 10 in 50-µL micro-drops of SOF citrate with 5% FCS (Holm P et al., 1999 Theriogenology 52, 683–700) under paraffin oil in a 5% O2, 5% CO2, 90% N2 atmosphere with high humidity. On Day 7, blastocysts (BL) were morphologically evaluated and recorded. Results are shown in Table 1. Data was compared by chi-square analysis. Sexed frozen bovine sperm can be used successfully in IVF systems. More research needs to be done to optimize and standardize bovine in vitro fertilization with sexed semen. Table 1 Results of comparisons between bulls, sperm concentrations, cleavage and embryo development
Enhanced Myosin Light Chain Phosphorylations as a Central Mechanism for Coronary Artery Spasm in a Swine Model With Interleukin-1β (1997)

These results indicate that enhanced MLC phosphorylations in the vascular smooth muscle play a central role in the pathogenesis of coronary spasm in our swine model.
Characterization of Haemophilus influenzae type b fimbriae (1984)

We confirmed that the fimbriae of Haemophilus influenzae type b conferred hemagglutinating activity (HA) towards human erythrocytes, and erythrocytes of certain other species. Most (17/25) cerebrospinal fluid isolates lacked detectable HA on direct testing, but selective enrichment for fimbriation (f+) indicated that 22 of 25 strains could produce these surface structures. HA was unchanged from pH 4.5 to 9.5 and was not inhibited by mannose or certain other simple sugars. The HA titer of a suspension of three f+ strains was slightly decreased at 50 degrees C; HA was lost by heating at 60 degrees C for 3 min. Growth on a variety of solid and liquid media and under differing degrees of oxygenation did not change the HA titer of a suspension of three f+ strains. Fimbriation was not lost on repeated subculture. Wild-type fimbriated strains, and those derived by transformation, did not contain detectable plasmid DNA. Transformation of a strain lacking fimbriae to f+ was associated with the appearance of an outer membrane protein of 24 kilodaltons. This protein was purified from one strain to homogeneity on sodium dodecyl sulfate-polyacrylamide gel electrophoresis by selective detergent solubilization and ammonium sulfate fractionation. Colonization capacity was equivalent with an isogenic untypable strain lacking or possessing fimbriae. Fimbriae of type b H. influenzae possess characteristics similar to those structures on other gram-negative bacteria; their role in cell physiology or pathogenesis of invasive disease is unknown.
[Physical and psychosocial sequelae of total larynx extirpation and the use of a heat and moisture exchanger]. (1990)

The incidence and severity of respiratory symptoms after total laryngectomy and their influence on everyday life were studied in 59 patients. Almost all patients (98%) have daily complaints of excessive sputum production and 64% of coughing. More than half the patients (57%) use forced expectoration more than 5 times a day in order to clear the airways and 37% have to clean the stoma more than 5 times a day. Respiratory problems appear to impair the quality of the voice, social contacts and psychological wellbeing and are associated with increased fatigue and sleep problems. In a prospective study the effect of a heat and moisture exchanger (HME) was measured in 42 patients. The frequency of sputum production, forced expectoration to clear the airways and stoma cleaning diminished significantly. As a result, feelings of fatigue decreased and social contacts improved. Respiratory problems after total laryngectomy deserve more attention. Treatment with an HME can in selected cases improve several other physical and psychosocial problems associated with this operation.
Dopaminergic cell death induced by MPP+, oxidant and specific neurotoxicants shares the common molecular mechanism (2001)

Recent etiological study in twins (Tanner et al. 1999) strongly suggests that environmental factors play an important role in typical, non-familial Parkinson's disease (PD), beginning after age 50. Epidemiological risk factor analyses of typical PD cases have identified several neurotoxicants, including MPP(+) (the active metabolite of MPTP), paraquat, dieldrin, manganese and salsolinol. Here, we tested the hypothesis that these neurotoxic agents might induce cell death in our nigral dopaminergic cell line, SN4741 (Son et al. 1999) through a common molecular mechanism. Our initial experiments revealed that treatment with both MPP(+) and the other PD-related neurotoxicants induced apoptotic cell death in SN4741 cells, following initial increases of H(2)O(2)-related ROS activity and subsequent activation of JNK1/2 MAP kinases. Moreover, we have demonstrated that during dopaminergic cell death cascades, MPP(+), the neurotoxicants and an oxidant, H(2)O(2) equally induce the ROS-dependent events. Remarkably, the oxidant treatment alone induced similar sequential molecular events: ROS increase, activation of JNK MAP kinases, activation of the PITSLRE kinase, p110, by both Caspase-1 and Caspase-3-like activities and apoptotic cell death. Pharmacological intervention using the combination of the antioxidant Trolox and a pan-caspase inhibitor Boc-(Asp)-fmk (BAF) exerted significant neuroprotection against ROS-induced dopaminergic cell death. Finally, the high throughput cDNA microarray screening using the current model identified downstream response genes, such as heme oxygenase-1, a constituent of Lewy bodies, that can be the useful biomarkers to monitor the pathological conditions of dopaminergic neurons under neurotoxic insult.
Anti-GPRC5D/CD3 Bispecific T-Cell–Redirecting Antibody for the Treatment of Multiple Myeloma (2019)

Although treatment advances over recent decades have significantly improved survival of patients with multiple myeloma, there is still an unmet medical need for more effective treatments. In this study, we identified G-protein-coupled receptor family C group 5 member D (GPRC5D) expression on the surface of malignant cells involved in multiple myeloma, but except for plasma cells and B cells, not at appreciable levels on normal hematopoietic cells and bone marrow progenitors, including hematopoietic stem cells. In addition, we constructed IgG-based anti-GPRC5D/CD3 bispecific T-cell-redirecting antibodies (GPRC5D TRAB), which suppressed the tumor growth of GPRC5D-positive myeloma cells through the activation of T cells <i>in vitro</i> and <i>in vivo</i> in xenograft models. Collectively, these findings suggest that GPRC5D is an antigen specific to multiple myeloma and a potential target of TRAB therapy.
Technical report: Part 1. Basic requirements for designing optimal oligonucleotide probe sequences (1996)

Although oligonucleotides can be easily synthesized and used in a variety of scientific fields, a major problem exists for each application: the difficulty of obtaining optimal oligonucleotide sequences. Oligonucleotide sequences have been described in each publication; however, little is disclosed on how to design such sequences and how specific each sequence is. This report introduces a new concept of computer hybridization simulation based on "thermodynamic hybridizability", which can overcome the problems of conventional homology analyses. Then, all the necessary components and factors for designing optimal probe sequences, such as hybridization strength, specificity, secondary structure, length of probes, probe-to-probe interaction, are discussed in detail. Also included are procedures for manipulating various types of data for selection of optimal oligonucleotides. This report provides a general guideline for optimal probe design and encourages basic and clinical scientists to enhance their research activities by using optimal oligonucleotides.
Medicinal Chemistry of siRNA Delivery (2010)

ADVERTISEMENT RETURN TO ISSUEPerspectiveNEXTMedicinal Chemistry of siRNA DeliveryMatthew G. Stanton* and Steven L. Colletti*View Author Information Department of Medicinal Chemistry, Merck Research Laboratories, Merck & Co., Inc., West Point, Pennsylvania 19486*To whom correspondence should be addressed. For M.G.S.: phone, 215-652-6975; fax, 215-652-3971; e-mail, [email protected]. For S.L.C.: phone, 215-652-6458; fax, 215-652-3971; e-mail, [email protected]Cite this: J. Med. Chem. 2010, 53, 22, 7887–7901Publication Date (Web):August 31, 2010Publication History Received13 May 2010Published online31 August 2010Published inissue 25 November 2010https://pubs.acs.org/doi/10.1021/jm1003914https://doi.org/10.1021/jm1003914review-articleACS PublicationsCopyright © 2010 American Chemical SocietyRequest reuse permissionsArticle Views4842Altmetric-Citations56LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose SUBJECTS:Biopolymers,Conjugate acid-base pairs,Gene delivery,Genetics,Lipids Get e-Alerts
A Practical Approach for Improving Startup Latency in Java Applications (1999)

In emerging application domains, such as thin client computing and hypertext systems with embedded objects (e.g. the World Wide Web), the process of downloading application code is in the critical path of users. We observe that in these domains, compliance with existing standards and minimizing the impact on the clients is crucial. We argue that the fundamental problem for mobile code is that the units of code distribution in networked object systems, such as Java, are not suited for efficient utilization of network bottlenecks. In this paper, we propose a separate optimization step, between compilation and loading, whereby application code is restructured to more effectively use the available network bandwidth for program download. We have designed and implemented such an optimization step as a binary rewriting service for Java applets and applications. Our implementation does not require any modifications to existing Java virtual machines, compilers or clients. We have...