gebhart/patrepeval huggingface dataset:
Glycogen synthase kinase‐3β, or a link between amyloid and tau pathology? (2008)

Phosphorylation is the most common post-translational modification of cellular proteins, essential for most physiological functions. Deregulation of phosphorylation has been invoked in disease mechanisms, and the case of Alzheimer's disease (AD) is no exception: both in the amyloid pathology and in the tauopathy are kinases deeply implicated. The glycogen synthase kinase-3 (GSK-3) isozymes participate in diverse cellular processes and important signalling pathways and have been implicitly linked to diverse medical problems, i.e. from diabetes and cancer to mood disorders and schizophrenia, and in the neurodegeneration of AD. Here, we review specific aspects of GSK-3 isozymes in the framework of recent data that we obtained in novel transgenic mouse models that robustly recapitulate the pathology and mechanistical problems of AD.
Cationic Ruthenium Allenylidene Complexes as Catalysts for Ring Closing Olefin Metathesis (2000)

A series of well accessible cationic ruthenium allenylidene complexes of the general type [(eta6-arene)(R3P)RuCl(=C=CR'2)]+ X- is described which constitute a new class of pre-catalysts for ring closing olefin metathesis reactions (RCM) and provide an unprecedented example for the involvement of metal allenylidenes in catalysis. They effect the cyclization of various functionalized dienes and enynes with good to excellent yields and show a great tolerance towards an array of functional groups. Systematic variations of their basic structural motif have provided insights into the essential parameters responsible for catalytic activity which can be enhanced further by addition of Lewis or Bronsted acids, by irradiation with UV light, or by the adequate choice of the "non-coordinating" counterion X-. The latter turned out to play a particularly important role in determining the rate and selectivity of the reaction. A similarly pronounced influence is exerted by remote substituents on the allenylidene residue which indicates that this ligand (or a ligand derived thereof) may remain attached to the metal throughout the catalytic process. X-ray crystal structures of the catalytically active allenylidene complexes 3b.PF6 and 15.OTf as well as of the chelate complex 10 required for the preparation of the latter catalyst are reported.
Polarization of almost-plane waves (2000)

The general polarization behavior of almost-plane waves, in which the electric field varies slowly over a circular pupil, is considered, on the basis of an axial Hertz potential treatment and expansion in Zernike polynomials. The resultant modes of a circular aperture are compared with the well-known waveguide (or optical fiber) modes and Gaussian beam modes. The wave can be decomposed into partial waves of electric and magnetic types. The modes for a square pupil are also considered. The particular application of the effect on polarization of focusing the waves is discussed. Another application discussed is the Fresnel reflection from a dielectric interface, it being shown that the Fresnel reflection alters the relative strength of the electric and magnetic components.
A two‐dimensional NMR study of the antimicrobial peptide magainin 2 (1988)

Using two-dimensional NMR spectroscopy, a complete 1H resonance assignment has been obtained for the peptide magainin 2 recently isolated from Xenopus laevis. It is demonstrated that this peptide adopts an alpha-helical structure with amphiphilic character when dissolved in a mixture of trifluoroethanol (TFE) and H2O. The transition to the alpha-helical conformation occurs at very low concentrations of TFE.
Percolation-dominated conductivity in a conjugated-polymer-carbon-nanotube composite (1998)

We have made electrical measurements on a system using carbon nanotubes as the dopant material. A semiconjugated, organic polymer was mixed with carbon nanotubes to form a wholly organic composite. Composite formation from low to high nanotube concentration increases the conductivity dramatically by ten orders of magnitude, indicative of percolative behavior. Effective mobilities were calculated from the space-charge regions of the current-voltage characteristics for the 0--8 % mass fractions. After an initial rise these were seen to fall from 1--8 % doping levels as predicted by theory. From the values for conductivity and mobility, an effective carrier density was calculated. This was seen to decrease between 0% and 1%, before rising steadily.
Autotagging Facebook: Social network context improves photo annotation (2008)

Most personal photos that are shared online are embedded in some form of social network, and these social networks are a potent source of contextual information that can be leveraged for automatic image understanding. In this paper, we investigate the utility of social network context for the task of automatic face recognition in personal photographs. We combine face recognition scores with social context in a conditional random field (CRF) model and apply this model to label faces in photos from the popular online social network Facebook, which is now the top photo-sharing site on the Web with billions of photos in total. We demonstrate that our simple method of enhancing face recognition with social network context substantially increases recognition performance beyond that of a baseline face recognition system.
Sinusitis. A review for generalists. (1995)

A frequent complication of the common cold, sinusitis is one of the most prevalent problems seen in general medical and emergency department practices. In addition, nosocomial sinus infection, particularly in intensive care units, is being recognized more frequently. Decision making about managing patients with sinusitis is based primarily on the history and, to a lesser extent, the findings of the physical examination.
The specificity of proanthocyanidin-protein interactions. (1981)

The proanthocyanidins or condensed tannins, phenolic polymers which are synthesized by many plants, characteristically bind and precipitate proteins. The specificity of the interaction was investigated using a competitive binding assay to compare directly the affinities of various proteins and synthetic polymers for the tannin obtained from Sorghum bicolor (Lin.) Moench. At pH 4.9, the relative affinities range over more than 4 orders of magnitude, indicating that this proanthocyanidin interacts quite selectively with protein and protein-like polymers. The affinity for tannins is an inverse function of the size of the polymer, and peptides with less than six residues interact very weakly with tannin. Proteins are precipitated by proanthocyanidins most efficiently at pH values near their isoelectric points. Proline-rich proteins and polymers have very high affinities for tannin. Tightly coiled globular proteins have much lower affinities for tannin than conformationally loose proteins.
<title>Multimedia architectures: from desktop systems to portable appliances</title> (1997)

Future desktop and portable computing systems will have as their core an integrated multimedia system. Such a system will seamlessly combine digital video, digital audio, computer animation, text, and graphics. Furthermore, such a system will allow for mixed-media creation, dissemination, and interactive access in real time. Multimedia architectures that need to support these functions have traditionally required special display and processing units for the different media types. This approach tends to be expensive and is inefficient in its use of silicon. Furthermore, such media-specific processing units are unable to cope with the fluid nature of the multimedia market wherein the needs and standards are changing and system manufacturers may demand a single component media engine across a range of products. This constraint has led to a shift towards providing a single-component multimedia specific computing engine that can be integrated easily within desktop systems, tethered consumer appliances, or portable appliances. In this paper, we review some of the recent architectural efforts in developing integrated media systems. We primarily focus on two efforts, namely the evolution of multimedia-capable general purpose processors and a more recent effort in developing single component mixed media co-processors. Design considerations that could facilitate the migration of these technologies to a portable integrated media system also are presented.
Pharmacokinetics of 6-Gingerol, 8-Gingerol, 10-Gingerol, and 6-Shogaol and Conjugate Metabolites in Healthy Human Subjects (2008)

Six-gingerol, 8-gingerol, 10-gingerol, and 6-shogaol are absorbed after p.o. dosing and can be detected as glucuronide and sulfate conjugates.
Hypermutation in bacteria and other cellular systems (2001)

A temporary state of hypermutation can in principle arise through an increase in the rate of polymerase errors (which may or may not be triggered by template damage) and/or through abrogation of fidelity mechanisms such as proofreading and mismatch correction. In bacteria there are numerous examples of transient mutator states, often occurring as a consequence of stress. They may be targeted to certain regions of the DNA, for example by transcription or by recombination. The initial errors are made by various DNA polymerases which vary in their error-proneness: several are inducible and are under the control of the SOS system. There are several structurally related polymerases in mammals that have recently come to light and that have unusual properties, such as the ability to carry out 'accurate' translesion synthesis opposite sites of template damage or the possession of exceedingly high misincorporation rates. In bacteria the initial errors may be genuinely spontaneous polymerase errors or they may be triggered by damage to the template strand, for example as a result of attack by active oxidative species such as singlet oxygen. In mammalian cells, hypermutable states persisting for many generations have been shown to be induced by various agents, not all of them DNA damaging agents. A hypermutable state induced by ionizing radiation in male germ cells in the mouse results in a high rate of sequence errors in certain unstable minisatellite loci; the mechanism is unclear but believed to be associated with recombination events.
Alternative Concepts of Suicide Gene Therapy for Graft-versus-Host Disease after Adoptive Immunotherapy (2003)

T-cell suicide gene therapy represents a promising novel treatment strategy for graft-versus-host disease following adoptive immunotherapy after allogeneic hematopoietic stem cell transplantation. The clinical efficiency of this approach is still hampered by several obstacles including induction of alloresponses due to the use of immunogenic suicide and selection genes, genetic inactivation of suicide genes, and functional immunological impairment after retroviral transduction with extensive in vitro stimulation. New concepts as possible solutions to these limitations are discussed.
Spray Drying of Biopharmaceuticals: Stability and Process Considerations (2006)

Spray drying represents an elegant one-step process for producing biopharmaceutical formulations with unique particle characteristics. However, the full potential of spray drying of therapeutic/proteins/peptides has yet to be fully exploited. The reluctance of utilizing spray drying for formulation development may stem from the fact that the process oftentimes subjects the therapeutic actives to temperatures in excess of 100°C, which is a concern for thermally labile drugs as spray drying was performed primarily on co-current spray dryer in a single-stage mode. In this review we discuss the respective dehydration mechanisms of spray drying and the appropriate formulation strategies that can be taken to minimize detrimental effects on biomolecules.
Identification of Late-Onset Hypogonadism in Middle-Aged and Elderly Men (2010)

Late-onset hypogonadism can be defined by the presence of at least three sexual symptoms associated with a total testosterone level of less than 11 nmol per liter (3.2 ng per milliliter) and a free testosterone level of less than 220 pmol per liter (64 pg per milliliter).
The first chiral diene-based metal–organic frameworks for highly enantioselective carbon–carbon bond formation reactions (2015)

We have designed the first chiral diene-based metal-organic framework (MOF), E<sub>2</sub>-MOF, and postsynthetically metalated E<sub>2</sub>-MOF with Rh(i) complexes to afford highly active and enantioselective single-site solid catalysts for C-C bond formation reactions. Treatment of E<sub>2</sub>-MOF with [RhCl(C<sub>2</sub>H<sub>4</sub>)<sub>2</sub>]<sub>2</sub> led to a highly enantioselective catalyst for 1,4-additions of arylboronic acids to α,β-unsaturated ketones, whereas treatment of E<sub>2</sub>-MOF with Rh(acac)(C<sub>2</sub>H<sub>4</sub>)<sub>2</sub> afforded a highly efficient catalyst for the asymmetric 1,2-additions of arylboronic acids to aldimines. Interestingly, E<sub>2</sub>-MOF·Rh(acac) showed higher activity and enantioselectivity than the homogeneous control catalyst, likely due to the formation of a true single-site catalyst in the MOF. E<sub>2</sub>-MOF·Rh(acac) was also successfully recycled and reused at least seven times without loss of yield and enantioselectivity.
Platelet activating factor mediates interleukin-2-induced lung injury in the rat. (1992)

Interleukin-2 was recently shown to cause acute lung injury characterized by microvascular permeability defect, interstitial edema, and leukosequestration. Similar responses can also be produced by platelet activating factor (PAF). Thus, the present study aimed to examine whether PAF plays a key role in the development of IL-2-induced lung injury in the anesthetized rat. Intravenous infusion (60 min) of recombinant human IL-2 at 10(5)-10(6) U/rat (n = 7-9) dose-dependently elevated lung water content (27 +/- 1%, P less than 0.01), myeloperoxidase activity (+84 +/- 23%, P less than 0.05), and serum thromboxane B2 (990 +/- 70%, P less than 0.01), but failed to alter blood pressure, hematocrit, serum tumor necrosis factor-alpha, and circulating leukocytes and platelets. Pretreatment (-30 min) with a potent and specific PAF antagonist, BN 50739 (10 mg/kg, intraperitoneally, n = 6) prevented the pulmonary edema (P less than 0.05) and thromboxane B2 production (P less than 0.01), and attenuated the elevation of lung myeloperoxidase activity (+18 +/- 16%, P less than 0.05) induced by IL-2. These data suggest that PAF is involved in the pathophysiological processes leading to IL-2-induced lung injury, and point to the potential therapeutic capacity of PAF antagonists in preventing pulmonary edema during IL-2 therapy.
France, Civil-Military Relations, and Nuclear Weapons (1994)

I would like to thank Scott Sagan and David Yost for their comments and suggestions on an earlier draft of this paper, and Cynthia Schoch who helped to translate it. A slightly different version of this article appears in “Civil-military Relations and Nuclear Weapons” (Stanford: Center for International Security and Arms Control, 1994). Versions of some sections of the article have also appeared in Samy Cohen, La defaite des generaux: La pouvoir politique et l'armeee sous la Ve Reepublique (Paris: Fayard, 1994).
Folate Deficiency Induces In Vitro and Mouse Brain Region-Specific Downregulation of Leucine Carboxyl Methyltransferase-1 and Protein Phosphatase 2A Bα Subunit Expression That Correlate with Enhanced Tau Phosphorylation (2008)

Altered folate homeostasis is associated with many clinical and pathological manifestations in the CNS. Notably, folate-mediated one-carbon metabolism is essential for methyltransferase-dependent cellular methylation reactions. Biogenesis of protein phosphatase 2A (PP2A) holoenzyme containing the regulatory B(alpha) subunit, a major brain tau phosphatase, is controlled by methylation. Here, we show that folate deprivation in neuroblastoma cells induces downregulation of PP2A leucine carboxyl methyltransferase-1 (LCMT-1) expression, resulting in progressive accumulation of newly synthesized demethylated PP2A pools, concomitant loss of B(alpha), and ultimately cell death. These effects are further accentuated by overexpression of PP2A methylesterase (PME-1) but cannot be rescued by PME-1 knockdown. Overexpression of either LCMT-1 or B(alpha) is sufficient to protect cells against the accumulation of demethylated PP2A, increased tau phosphorylation, and cell death induced by folate starvation. Conversely, knockdown of either protein accelerates folate deficiency-evoked cell toxicity. Significantly, mice maintained for 2 months on low-folate or folate-deficient diets have brain-region-specific alterations in metabolites of the methylation pathway. Those are associated with downregulation of LCMT-1, methylated PP2A, and B(alpha) expression and enhanced tau phosphorylation in susceptible brain regions. Our studies provide novel mechanistic insights into the regulation of PP2A methylation and tau. They establish LCMT-1- and B(alpha)-containing PP2A holoenzymes as key mediators of the role of folate in the brain. Our results suggest that counteracting the neuronal loss of LCMT-1 and B(alpha) could be beneficial for all tauopathies and folate-dependent disorders of the CNS.
Microbial ecology of ballast water during a transoceanic voyage and the effects of open-ocean exchange (2002)

The only procedure used frequently to reduce the risk of invasion by ballast-mediated biota is open-ocean exchange of ballast water, a procedure in which vessels release coastal water and replace it with oceanic water. Limited information exists concerning the effects of transport upon the aquatic microbial community throughout transit and following open-ocean exchange. A transoceanic voyage aboard a commercial bulk carrier afforded us the opportunity to sample the microbial community in exchanged and unexchanged ballast-water holds during the journey from Hadera, Israel to Baltimore, USA. Five days following the exchange process, all microbial metrics tested (i.e. bacteria concentration, virus-like particle density, chl a and phaeopigment concentration, and microbial biomass) had decreased 1.6-to 34-fold from initial values. With respect to microbial measures, no significant differences existed between exchanged and unexchanged holds on Day 15, the final day of sampling. We stress that we quantified differences in total microorganism abundance and biomass, not species composition, and more research is necessary to determine the changes that nonindigenous microorganisms, including potential pathogens, may effect in receiving waters.
Human alpha and gamma interferon analogs in rabbits with herpetic keratitis. (1985)

Complete gene synthesis methods have been used to construct analogs of human interferons (IFNs): these include a consensus of the known human IFN-alpha S, designated IFN-alpha Con1 and a variant of human IFN-gamma, designated IFN-gamma 4A. These interferons, in purified form, were used topically against herpes simplex virus type 1 (HSV-1) induced ocular keratitis in rabbits. Eyes pretreated with IFN-alpha Con1 had decreased signs of infection and a lower incidence of HSV-1 positive trigeminal ganglia (3 of 14 positive) compared to the placebo treated (10 of 14 positive). IFN-alpha Con1 was as effective as natural IFN-alpha subtypes on a units basis, despite the very high specific activity of this analog. IFN-gamma 4A used under similar conditions do not result in beneficial effects with treatments beginning 24 or 48 hr before or 4 hr after virus inoculation. Rabbits with confirmed latent HSV infection were treated topically with IFN-alpha Con1 (10(6) units per eye each day) either before or before and after attempts to intentionally reactivate the infection by bilateral iontophoresis of 6-hydroxydopamine plus topical epinephrine treatment of the corneas. These IFN-alpha Con1 treatment regimens along with intentional reactivation during latency did not: (1) lessen the frequency of inducible ocular shedding episodes; (2) alter the mean time of 3-5 days between attempts to reactive latent infection and the appearance of HSV in tears; or (3) significantly change the incidence of HSV-positive trigeminal ganglia (83-100% HSV positive).
Tumor and T cell engagement by BiTE. (2013)

Cancer immunotherapy attempts to exploit the capability of the immune system to attack malignant cells. Recent results suggest that clinical responses in patients point to this new mechanism as potentially beneficial in harnessing the immune system for combating established malignancies. These checkpoint-related immunotherapies rely on engaging a subset of T cells in anti-tumor immune responses. BiTE® (Bi-specific T cell engager) represents a distinct modality that directly engages any T cell and a specific antigen expressing tumor cell. The approach offers the advantage of engaging T cells and patient tumor cells that differentially express a specific cell surface antigen. The specificity confers redirected tumor cell killing and recent clinical data with the BiTE blinatumomab show evidence of clinical remissions. The characteristics of a suitable BiTE with the benefit of CD3 mediated T cell recognition and articulation of tumor specific antigens combined in this therapeutic modality is described here.
RAIN SCAVENGING OF RADIOACTIVE PARTICULATE MATTER FROM THE ATMOSPHERE (1957)

On the basis of Langmuir's theory of collection efficiencies, a model is derived to explain the removal of radioactive particulate matter from the atmosphere by rain. In this connection, Langmuir's collection efficiencies are modified to take into account the density of the solid particles, and are adjusted to express the fraction removed from a vertical cylinder of constant diameter. It is assumed that electrostatic effects can be neglected in the presence of ionizing radiation. It is found that direct interaction of raindrops and particles does not account for the efficient removal of material whose diameter is below approximately 1 micron. To explain the removal of these smaller particles, a further mechanism is investigated. This consists of allowing the particles to mix with the water cloud before the rain starts. Small particles that are scavenged by cloud droplets by a process of coagulation are then placed in a position to be more efficiently removed by the rain. Fractions of a given particle size removed as a result of both these mechanisms operating are presented as a function of rainfall rate and time, and application is made to an assumed size distribution of radioactive solid particles.
Identification of metastasis-associated genes by transcriptional profiling of a metastasizing versus a non-metastasizing human melanoma cell line. (2001)

In order to identify genes associated with the metastatic phenotype we have compared the expression pattern of 6800 genes in a metastatic (NMCL-1) versus a non-metastatic (530) human melanoma cell line making use of DNA microarrays. The differentially expressed genes identified are involved in control of transcription, regulation of the cell-cycle, proteolysis, cell adhesion, immune response and signaling. A remarkable feature of the system under investigation is the consistent down-regulation of MHC-related and cell adhesion mediating genes in the metastatic cell line.