gebhart/patrepeval huggingface dataset:
Image Denoising by Sparse 3-D Transform-Domain Collaborative Filtering (2007)

We propose a novel image denoising strategy based on an enhanced sparse representation in transform domain. The enhancement of the sparsity is achieved by grouping similar 2-D image fragments (e.g., blocks) into 3-D data arrays which we call "groups." Collaborative filtering is a special procedure developed to deal with these 3-D groups. We realize it using the three successive steps: 3-D transformation of a group, shrinkage of the transform spectrum, and inverse 3-D transformation. The result is a 3-D estimate that consists of the jointly filtered grouped image blocks. By attenuating the noise, the collaborative filtering reveals even the finest details shared by grouped blocks and, at the same time, it preserves the essential unique features of each individual block. The filtered blocks are then returned to their original positions. Because these blocks are overlapping, for each pixel, we obtain many different estimates which need to be combined. Aggregation is a particular averaging procedure which is exploited to take advantage of this redundancy. A significant improvement is obtained by a specially developed collaborative Wiener filtering. An algorithm based on this novel denoising strategy and its efficient implementation are presented in full detail; an extension to color-image denoising is also developed. The experimental results demonstrate that this computationally scalable algorithm achieves state-of-the-art denoising performance in terms of both peak signal-to-noise ratio and subjective visual quality.
A small nucleolar RNA:ribozyme hybrid cleaves a nucleolar RNA target in vivo with near-perfect efficiency (1999)

A hammerhead ribozyme has been localized to the yeast nucleolus by using the U3 small nucleolar RNA as a carrier. The hybrid small nucleolar RNA:ribozyme, designated a "snorbozyme," is metabolically stable and cleaves a target U3 RNA with nearly 100% efficiency in vivo. This is the most efficient in vivo cleavage reported for a trans-acting ribozyme. A key advantage of the model substrate featured is that a stable, trimmed cleavage product accumulates. This property allows accurate kinetic measurements of authentic cleavage in vivo. The system offers new avenues for developing effective ribozymes for research and therapeutic applications.
Focal Adhesion Kinase Suppresses Apoptosis by Binding to the Death Domain of Receptor-Interacting Protein (2004)

Tumor cells resist the apoptotic stimuli associated with invasion and metastasis by activating survival signals that suppress apoptosis. Focal adhesion kinase (FAK), a tyrosine kinase that is overexpressed in a variety of human tumors, mediates one of these survival signals. Attenuation of FAK expression in tumor cells results in apoptosis that is mediated by caspase 8- and FADD-dependent pathways, suggesting that death receptor pathways are involved in the process. Here, we report a functional link between FAK and death receptors. We have demonstrated that FAK binds to the death domain kinase receptor-interacting protein (RIP). RIP is a major component of the death receptor complex and has been shown to interact with Fas and tumor necrosis factor receptor 1 through its binding to adapter proteins. We have shown that RIP provides proapoptotic signals that are suppressed by its binding to FAK. We thus propose that FAK overexpression in human tumors provides a survival signal function by binding to RIP and inhibiting its interaction with the death receptor complex.
Covariate Shift by Kernel Mean Matching (2008)

This chapter addresses the problem of distribution matching between training and test stages. It proposes a method called kernel mean matching, which allows direct estimation of the importance weight without going through density estimation. The chapter then relates the re-weighted estimation approaches to local learning, where labels on test data are estimated given a subset of training data in a neighborhood of the test point. Examples are nearest-neighbor estimators and Watson–Nadaraya-type estimators. The chapter also provides detailed proofs concerning the statistical properties of the kernel mean matching estimator, and detailed experimental analyses for both covariate shift and local learning.
Adaptive precompensators for flexible-link manipulator control (2003)

The application of input precompensators to flexible manipulators is considered. Frequency domain compensators color the input around the flexible mode locations, resulting in a bandstop or notch filter in cascade with the system. Time domain compensators apply a sequence of impulses at prespecified times related to the modal frequencies. The resulting control corresponds to a feedforward term that convolves in real-time the desired reference input with a sequence of impulses and produces a vibration-free output. An adaptive precompensator can be implemented by combining a frequency domain identification scheme which is used to estimate online the modal frequencies and subsequently update the bandstop interval or the spacing between the impulses. The combined adaptive input preshaping scheme provides the most rapid slew that results in a vibration-free output. Experimental results are presented to verify the results.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Epidermal growth factor receptor gene expression in high grade gliomas. (2011)

As nearly 1/3 of high grade gliomas do not demonstrate abnormal gene expression levels, EGFR status should be taken into account in any targeted therapy attempt. The significance of EGFR axis-related differences between young and old glioma patients and their impact on the prognosis warrant further study.
On the Addition of an Input Buffer to an Iterative Decoder for LDPC Codes (2007)

This paper describes the application of a new hardware architecture to the design of a decoder for low-density parity-check (LDPC) codes. Thanks to the systematic use of the built-in stopping rule in the decoder, the decoder runs the minimum number of iterations on each packet of received data. The addition of a small buffer on the decoder input allows the exploitation of the variations in the decoding time of different packets, in a spirit similar to statistical multiplexing of the data flow. Analysis and simulations are presented using the decoder for the next generation satellite digital video broadcasting (DVB-S2) as a case study, to show that the throughput may be doubled with only two extra buffer locations, at almost no cost in chip area.
Cellular processing of the nerve growth factor precursor by the mammalian pro-protein convertases (1996)

In order to define the enzymes responsible for the maturation of the precursor of nerve growth factor (proNGF), its biosynthesis and intracellular processing by the pro-protein convertases furin, PC1, PC2, PACE4, PC5 and the PC5 isoform PC5/6-B were analysed using the vaccinia virus expression system in cells containing a regulated and/or a constitutive secretory pathway. Results demonstrate that in both cell types furin, and to a lesser extent PACE4 and PC5/6-B, are the best candidate proNGF convertases. Furthermore, two processed NGF forms of 16.5 and 13.5 kDa were evident in constitutively secreting cell lines such as LoVo and BSC40 cells, whereas only the 13.5 kDa form was observed in AtT20 cells, which contain secretory granules. Both forms display the same N-terminal sequence as mature NGF, and were also produced following site-directed mutagenesis of the C-terminal Arg-Arg sequence of NGF into Ala-Ala, suggesting that the difference between them is not at the C-terminus. Co-expression of proNGF with furin and either chromogranin B or secretogranin II (but not chromogranin A) in BSC40 cells eliminated the 16.5 kDa form. Data also show that N-glycosylation of the pro-segment of proNGF and trimming of the oligosaccharide chains are necessary for the exit of this precursor from the endoplasmic reticulum and its eventual processing and secretion. Sulphate labelling experiments demonstrated that proNGF is processed into mature NGF following the arrival of the precursor in the trans-Golgi network. This comparative study shows that the three candidate mammalian subtilisin/kexin-like convertases identified process proNGF into NGF and that the nature of the final processed products is dependent on the intracellular environment.
Secretion of interleukin-10 or interleukin-12 by LPS-activated dendritic cells is critically dependent on time of stimulus relative to initiation of purified DC culture (2002)

Dendritic cells (DC) are key regulators of adaptive immunity with the potential to induce T cell activation/immunity or T cell suppression/tolerance. DC are themselves induced by "maturation" signals such as bacterial lipopolysaccharide (LPS). We demonstrate here that LPS can stimulate DC to display similar maturation phenotypes but to differentiate toward an interleukin (IL)-10(high)- or IL-12(high)-secretor profile depending on the timing of maturation signal induction. Immediate/early administration of LPS induced purified bone marrow-derived DC (BMDC) to differentiate as IL-10(high)IL-12(low)-secreting cells, termed early DC (eDC). Conversely, delayed administration of LPS altered the DC cytokine profile to IL-10(low)IL-12(high), termed later DC (lDC). The presence of IL-4 enhanced the yield and maturation of BMDC but inhibited LPS-induced IL-10 production by eDC. In contrast, interferon-gamma reduced the yield of DC but promoted the level of LPS-induced IL-10 production by lDC. Our data provide new evidence that ex vivo manipulation and the cytokine environment regulate DC maturation status and cytokine-secretor phenotype with implications for the control of T cell differentiation and function via DC-based immunotherapeutic strategies.
A large-scale study of the ultrawideband microwave dielectric properties of normal, benign and malignant breast tissues obtained from cancer surgeries (2007)

The development of microwave breast cancer detection and treatment techniques has been driven by reports of substantial contrast in the dielectric properties of malignant and normal breast tissues. However, definitive knowledge of the dielectric properties of normal and diseased breast tissues at microwave frequencies has been limited by gaps and discrepancies across previously published studies. To address these issues, we conducted a large-scale study to experimentally determine the ultrawideband microwave dielectric properties of a variety of normal, malignant and benign breast tissues, measured from 0.5 to 20 GHz using a precision open-ended coaxial probe. Previously, we reported the dielectric properties of normal breast tissue samples obtained from reduction surgeries. Here, we report the dielectric properties of normal (adipose, glandular and fibroconnective), malignant (invasive and non-invasive ductal and lobular carcinomas) and benign (fibroadenomas and cysts) breast tissue samples obtained from cancer surgeries. We fit a one-pole Cole-Cole model to the complex permittivity data set of each characterized sample. Our analyses show that the contrast in the microwave-frequency dielectric properties between malignant and normal adipose-dominated tissues in the breast is considerable, as large as 10:1, while the contrast in the microwave-frequency dielectric properties between malignant and normal glandular/fibroconnective tissues in the breast is no more than about 10%.
Quantum‐Dot Displays: Giving LCDs a Competitive Edge through Color (2013)

Quantum‐dot technology is bringing wide color gamut to LCDs, giving them a leg up on another advantage that once belonged to OLEDs.
Fast atom bombardment mass spectrometry of amine mixtures (1988)

The use of fast atom bombardment mass spectrometry has been demonstrated for the qualitative analysis of mixtures of dansylated amines and compared with high-performance liquid chromatography for the quantification of some individual amines from meat products.
Pressure-dependent photoluminescence study of wurtzite GaN (1995)

Low-temperature photoluminescence (PL) in single-crystal GaN films grown on sapphire substrates by metalorganic chemical vapor deposition has been studied as a function of applied hydrostatic pressure using the diamond-anvil-cell technique. The PL spectra of the GaN at atmospheric pressure were dominated by two sharp, strong, near-band-edge exciton luminescence lines and a broad emission band in the yellow spectral region. The exciton emission lines were found to shift almost linearly toward higher energy with increasing pressure. While the yellow emission band showed a similar blue shift behavior under applied pressure, a relatively strong sublinear pressure dependence was observed. By examining the pressure dependence of the exciton emission structures, the pressure coefficient of the direct Γ band gap in the wurtzite GaN was determined. The value of the hydrostatic deformation potential of the band gap has also been deduced from the experimental results.
Parathyroid Hormone Stimulates Release of Insulin-Like Growth Factor-I (IGF-I) and IGF-II from Neonatal Mouse Calvaria in Organ Culture* (1989)

Effects of increased bone resorption on release of insulin-like growth factor-I (IGF-I) and IGF-II into the osteoblast microenvironment were investigated using neonatal mouse calvaria organ cultures. Release of these growth factors from calvaria into serum-free medium was quantitated using a human IGF-I RIA and human IGF-II RRA. Untreated calvaria released several-fold more IGF-II than IGF-I. PTH (from 1-12 nM) stimulated a dose-dependent increase in the release of both growth factors that correlated with increased calcium release and was sustained for up to 6 days. IGF-I and IGF-II release were maximally stimulated 5- to 10-fold and 1.5- to 2-fold, respectively, compared to untreated control values. Calcitonin inhibited PTH-stimulated resorption, but had no effect on PTH stimulation of IGF-I and IGF-II release, suggesting that PTH effects on IGF-I and IGF-II release were not dependent on resorption. Furthermore, the amounts of IGF-I and IGF-II released from calvaria during 6 days of culture were 5-fold more than the amounts of IGF-I and IGF-II present in the calvaria (bone plus cells) at the beginning of culture, suggesting that much of the IGF-I and IGF-II released was newly produced by calvaria cells. The results suggest that PTH directly stimulated calvarial osteoblasts to release IGF-I and IGF-II. Since IGF-I and IGF-II stimulate osteoblastic cell proliferation, the effect of PTH on the release of these and other growth factors may mediate coupling of bone formation to bone resorption.
Glucose and Xylitol Tolerance Tests for Ketotic and Healthy Dairy Cows (1996)

Intravenous administration of 500 ml of 50% glucose solution to 10 nonketotic dairy cows increased the blood glucose and insulin concentrations 7-fold immediately following administration. Blood glucose and insulin concentrations of ketotic cows were about 6- and 3-fold higher, respectively, immediately following glucose administration. Administration of 1000 ml of 25% xylitol (xylo-pentane-1,2,3,4,5-pentol) in nonketotic cows increased blood glucose and insulin concentrations 2- and 9-fold, respectively. Ketotic cows treated with xylitol exhibited blood insulin concentration 12-fold higher following administration. This insulin increase might be explained by a decrease in insulin degradation because of the diffusion of xylitol, which is not dependent on insulin in peripheral tissues. For ketotic cows given xylitol, serum concentrations of free fatty acid decreased, and triglyceride concentrations and aspartic acid aminotransferase activity increased, but values were unchanged by xylitol administration to nonketotic cows. Thus, for ketotic cows, the responses of the blood glucose and insulin concentrations to xylitol administration were better than those responses to glucose administration. Improvements in clinical signs, i.e., disappearance of urinary ketone bodies and recovery to normal feed consumption, also suggested the usefulness of xylitol administration for the treatment of ketosis.
A multi-wavelength locker for WDM system (2002)

We demonstrate a simple technique to stabilize the wavelengths of WDM lasers using a synchronized etalon filter and a digital signal processing board. The results shows that the proposed technique could maintain the frequency stability of each WDM laser within 200 MHz.
Mistargeting of B-Type Lamins at the End of Mitosis (2001)

We previously showed that targeting of protein phosphatase 1 (PP1) to the nuclear envelope (NE) by the A-kinase anchoring protein, AKAP149, correlates with nuclear assembly of B-type lamins in vitro. We demonstrate here that failure of AKAP149-mediated assembly of B-type lamins into the nuclear lamina at the end of mitosis is followed by apoptosis, and induces expression of the gene encoding A-type lamins in cells that normally do not express lamins A/C. In HeLa cells, inhibition of PP1 association with the NE mediated by a peptide containing the PP1-binding domain of AKAP149 results in failure of B-type lamins to assemble, and in their rapid caspase-dependent proteolysis. However, assembly of lamins A/C is not affected. Nonetheless, apoptosis follows within hours of nuclear reformation after mitosis. In lymphoid KE37 cells, which do not express lamins A/C, inhibition of B-type lamin assembly triggers rapid synthesis and nuclear assembly of both lamins A and C before apoptosis takes place. The results indicate that nuclear assembly of B-type lamins is essential for cell survival. They also suggest that mistargeting of B-type lamins at the end of mitosis elicits a tentative rescue process to assemble a nuclear lamina in lymphoid cells that normally do not express lamins A/C.
A survey of covert channels and countermeasures in computer network protocols (2007)

Covert channels are used for the secret transfer of information. Encryption only protects communication from being decoded by unauthorised parties, whereas covert channels aim to hide the very existence of the communication. Initially, covert channels were identified as a security threat on monolithic systems i.e. mainframes. More recently focus has shifted towards covert channels in computer network protocols. The huge amount of data and vast number of different protocols in the Internet seems ideal as a high-bandwidth vehicle for covert communication. This article is a survey of the existing techniques for creating covert channels in widely deployed network and application protocols. We also give an overview of common methods for their detection, elimination, and capacity limitation, required to improve security in future computer networks.
Optimization of Nanoscale Thyristors on SOI for High-Performance High-Density Memories (2006)

In this paper, methods for achieving a manufacturable TCCT on SOI with excellent thermal stability and fast switching speed are reported for the first time. A carrier lifetime adjustment process was implemented and indium was used as a p-type dopant. By using these methods, we demonstrate a TCCT device with stable forward breakover voltage (Vfb) at 125degC and bipolar gain with significantly improved temperature response. Finally, we achieved a worst-case switching speed of less than 2.1 ns measured from a 9Mb T-RAM test chip
Control of Protein Synthesis in Herpesvirus-infected Cells: Analysis of the Polypeptides Induced by Wild Type and Sixteen Temperature-sensitive Mutants of HSV strain 17 (1976)

SUMMARY The polypeptides induced in cells infected with a Glasgow isolate of HSV-1 (17 syn +) have been characterized by SDS polyacrylamide gel electrophoresis. Study of the kinetics of synthesis in three cell lines has detected a total of 52 polypeptides, 33 of which can be identified in polypeptide profiles of purified virions. These include six low mol. wt. polypeptides that have not been previously reported. Several polypeptides were labelled with glucosamine in infected BHK cells. The different polypeptide patterns obtained at permissive (31 °C) and non-permissive (38 °C) temperature in cells infected with 16 temperature-sensitive (ts) mutants are reported. The effect of multiplicity of infection (m.o.i.) on the polypeptide profile has been examined for two of the DNA — ve mutants: below ten, the profile varied with the m.o.i. whereas above ten it was constant. All mutants were therefore examined at an m.o.i. of approx. 20. Mutants from the same complementation group showed very similar profiles. A number of general conclusions concerning control of protein synthesis in HSV infected cells can be made: (1) As most of the 16 ts mutants affected the synthesis of several or many polypeptides it follows that a large proportion of the genome specifies controlling functions. (2) The high frequency with which some polypeptides were affected suggests they are at or near the terminus of biosynthetic pathways which are under multiple control. (3) Conversely, some polypeptides were affected with a low frequency suggesting that their synthesis is not dependent on the expression of many virus functions. (4) Several individual ts mutations lead to the synthesis of increased amounts of different large polypeptides. (5) Analysis of every band detectably affected by at least one ts mutation has disclosed nine classes of dependence relationship between polypeptide synthesis and the DNA phenotype of the mutants, illustrating that this relationship is complex and different for different polypeptides. (6) The inhibition of host protein synthesis by the virus may not be a simple single step process.
Passive protective effect of egg-yolk antibodies against enterotoxigenicEscherichia coliK88+ infection in neonatal and early-weaned piglets (1999)

The protective effects of egg-yolk antibodies obtained from hens immunized with fimbrial antigens from a local strain (Escherichia coli K88+ MB, Manitoba, Canada) of K88+ piliated enterotoxigenic E. coli (ETEC) were evaluated in 3- and 21-day-old piglets in which ETEC diarrhea was induced and also in early-weaned piglets in a commercial farm. The results demonstrated that the E. coli K88+ MB-induced diarrhea in 3-day-old piglets was cured 24 h after treating with egg-yolk antibodies while those treated with egg-yolk powder from conventional hens continued to have diarrhea and 62.5% of them died of severe diarrhea. For 21-day-old weaned piglets, those fed egg-yolk antibodies had transient diarrhea, positive body weight gains and 100% survival during the period of the experiment, whereas control piglets that were treated with placebo had severe diarrhea and dehydration and some died within 48 h after infection. In the field trial, the incidence and severity of diarrhea of 14-18-day-old weaned piglets fed egg-yolk antibodies were much lower than in those fed a commercial diet containing an antibiotic. These results indicate that the neonatal and early-weaned piglets that received the egg-yolk antibodies were protected against ETEC infection.
Steerable wedge filters for local orientation analysis (1996)

Steerable filters have been used to analyze local orientation patterns in imagery. Such filters are typically based on directional derivatives, whose symmetry produces orientation responses that are periodic with period pi, independent of image structure. We present a more general set of steerable filters that alleviate this problem.
Une méthodologie de conceptionde circuits intégrés quasi-insensibles aux délais :application à l'étude et à la réalisation d'un processeur RISC 16-bit asynchrone (2001)

ISBN 2-913329-68-3