gebhart/patrepeval huggingface dataset:
The collection, preservation and function of peripheral blood hematopoietic cells in dogs. (1979)

Semicontinuous flow centrifugation (SFC) was employed in canines to obtain adequate numbers of cells for autologous marrow repopulation following supralethal cyclophosphamide administration (100 mg per kg). Four cycles using a 225 ml bowl and 30 ml per minute flow rate were carried out for procurement. Collections averaged 8.4 +/- 0.4 x 10(9) (n = 30) leukocytes. Mononuclear cells (MNC) comprised 75 +/- 2% of the population and granulocyte colony-forming units (CFU-C) totaled 1.9 +/- 0.09 x 10(5) colonies per collection. Eighty-six percent of mononuclear cells were "T" cells in the 30 to 90 second fraction compared to 49% at 150 to 120 seconds. CFU-C fractionation revealed a peak at 30-210 seconds and a second peak at 120-210 seconds. Following programed freezing and rapid thawing 77.7 +/- 11.4% of CFU-C were recovered. Using a dose of 1 x10(9) MNC per kg for reinfusion, marrow repopulation and clinical recovery occurred in four out of four dogs. It was concluded that 1) SFC was effective for obtaining adequate numbers of peripheral blood stem cells for autologous marrow repopulation. 2) A rapid thawing and direct transfusion technique appears satisfactory for administration. 3) Some separation of "T", "B" and CFU-C peripheral blood components is possible by centrifugation.
Time Valid One-Time Signature for Time-Critical Multicast Data Authentication (2009)

It is challenging to provide authentication to time-critical multicast data, where low end-to-end delay is of crucial importance. Consequently, it requires not only efficient authentication algorithms to minimize computational cost, but also avoidance of buffering packets so that the data can be immediately processed once being presented. Desirable properties for a multicast authentication scheme also include small communication overhead, tolerance to packet loss, and resistance against malicious attacks. In this paper, we propose a novel signature model - Time Valid One-Time Signature (TV-OTS) - to boost the efficiency of regular one-time signature schemes. Based on the TV-OTS model, we design an efficient multicast authentication scheme "TV-HORS" to meet the above needs. TV-HORS combines one-way hash chains with TV-OTS to avoid frequent public key distribution. It provides fast signing/verification and buffering-free data processing, which make it one of the fastest multicast authentication schemes to date in terms of end-to-end computational latency (on the order of microseconds). In addition, TV-HORS has perfect tolerance to packet loss and strong robustness against malicious attacks. The communication overhead of TV-HORS is much smaller than regular OTS schemes, and even smaller than RSA signature. The only drawback of TV-HORS is a relatively large public key of size 8 KB to 10 KB, depending on parameters.
Protection induced by commercially available live-attenuated and recombinant viral vector vaccines against infectious laryngotracheitis virus in broiler chickens (2012)

Viral vector vaccines using fowl poxvirus (FPV) and herpesvirus of turkey (HVT) as vectors and carrying infectious laryngotracheitis virus (ILTV) genes are commercially available to the poultry industry in the USA. Different sectors of the broiler industry have used these vaccines in ovo or subcutaneously, achieving variable results. The objective of the present study was to determine the efficacy of protection induced by viral vector vaccines as compared with live-attenuated ILTV vaccines. The HVT-LT vaccine was more effective than the FPV-LT vaccine in mitigating the disease and reducing levels of challenge virus when applied in ovo or subcutaneously, particularly when the challenge was performed at 57 days rather than 35 days of age. While the FPV-LT vaccine mitigated clinical signs more effectively when administered subcutaneously than in ovo, it did not reduce the concentration of challenge virus in the trachea by either application route. Detection of antibodies against ILTV glycoproteins expressed by the viral vectors was a useful criterion to assess the immunogenicity of the vectors. The presence of glycoprotein I antibodies detected pre-challenge and post challenge in chickens vaccinated with HVT-LT indicated that the vaccine induced a robust antibody response, which was paralleled by significant reduction of clinical signs. The chicken embryo origin vaccine provided optimal protection by significantly mitigating the disease and reducing the challenge virus in chickens vaccinated via eye drop. The viral vector vaccines, applied in ovo and subcutaneously, provided partial protection, reducing to some degree clinical signs, and challenge VIRUS replication in the trachea.
Topical fat reduction from the waist (2006)

Aminophylline cream offers a safe and effective method for cosmetic local fat reduction from the waist.
Two-pass MPEG-2 variable-bit-rate encoding (1999)

Many MPEG-2 encoding applications are real-time; this implies that the video signal must be encoded with no significant lookahead. However, there exist non-real-time applications that do enable us to first analyze a video sequence entirely, and, using the analysis results, to optimize a second encoding pass of the same data. One example of such an application is the digital video disk (DVD), which is designed to facilitate a variable-bit-rate (VBR) output stream. In that case, it is possible to let the MPEG-2 encoder produce a video sequence with a constant visual quality over time. This is in contrast to constant-bit-rate (CBR) systems, where the rate is constant but the visual quality varies with the coding difficulty. This paper describes a two-pass encoding system that has as its objective to produce an optimized VBR data stream in a second pass. In a first pass, the video sequence is encoded with CBR, while statistics concerning coding complexity are gathered. Next, the first-pass data is process ed to prepare the control parameters for the second pass, which performs the actual VBR compression. In this off-line processing stage, we determine the target number of bits for each picture in the sequence, such that we realize the VBR objective. This means that the available bits are appropriately distributed over the different video segments such that constant visual quality is obtained. To be able to quantify the constant visual quality, perceptual experiments are described and a practical model is fitted to them. Exceptional cases such as scene changes and fades are detected and dealt with appropriately. We also ensure that the second-pass compression process does not violate the decoder buffer boundaries. Finally, the encoding is performed again, but now under control of the processed first-pass data. During the running of this second pass, a run-time bit-production control mechanism monitors the accuracy and validity of the first-pass data, correcting errors in prediction and observing the buffer bo undaries. Results are compared to CBR operation.
Two Receptor Systems for Corticosterone in Rat Brain: Microdistribution and Differential Occupation (1985)

Two receptor systems for corticosterone (CORT) can be distinguished in rat brain: mineralocorticoid-like or CORT receptors (CR) and glucocorticoid receptors (GR). The microdistribution and extent of occupation of each receptor population by CORT were studied. The CR system is restricted predominantly to the lateral septum and hippocampus. Within the hippocampus, the highest density occurs in the subiculum +/- CA1 cell field (144 fmol/mg protein) and the dentate gyrus (104 fmol/mg protein). Affinity of CR for CORT was very high (Kd, approximately 0.5 nM). The GR system has a more widespread distribution in the brain. The highest density for GR is in the lateral septum (195 fmol/mg protein), the dentate gyrus (133 fmol/mg protein), the nucleus tractus solitarii and central amygdala. Substantial amounts of GR are present in the paraventricular nucleus and locus coeruleus and low amounts in the raphe area and the subiculum + CA1 cell field. The affinity of GR for CORT (Kd, approximately 2.5-5 nM) was 6- to 10-fold lower than that of CR. Occupation of CR by endogenous ligand was 89.5% during morning trough levels of pituitary-adrenal activity (plasma CORT, 1.4 micrograms/100 ml). Similar levels of occupation (88.7% and 97.6%) were observed at the diurnal peak (plasma CORT, 27 micrograms/100 ml) and after 1 h of restraint stress (plasma CORT, 25 micrograms/100 ml), respectively. Furthermore, a dose of 1 microgram CORT/100 g BW, sc, resulted in 80% CORT receptor occupation, whereas GR were not occupied. For 50% occupation of GR, doses needed to be increased to 50-100 micrograms/100 g BW, and for 95% occupation, a dose of 1 mg CORT was required. The plasma CORT level at the time of half-maximal GR occupation was about 25 micrograms/100 ml, which is in the range of levels attained after stress or during the diurnal peak of pituitary-adrenal activity. Thus, CR are extensively filled (greater than 90%) with endogenous CORT under most circumstances, while GR become occupied concurrent with increasing plasma CORT concentrations due to stress or diurnal rhythm. We conclude that CORT action via CR may be involved in a tonic (permissive) influence on brain function with the septohippocampal complex as a primary target. In view of the almost complete occupation of CR by endogenous hormones, the regulation of the CORT signal via CR will, most likely, be by alterations in the number of such receptors. In contrast, CORT action via GR is involved in its feedback action on stress-activated brain mechanisms, and GR occur widely in the brain.(ABSTRACT TRUNCATED AT 400 WORDS)
Regulatory T cells in cancer (2006)

Increasing evidence supports the existence of elevated numbers of regulatory T cells (T(reg) cells) in solid tumors and hematologic malignancies. Whereas the biology of CD4(+)CD25(+)FOXP3(+) T(reg) cells in murine models seems to be rather straightforward, studies in human diseases are more difficult to interpret due to expression of CD25 on activated effector T cells as well as T(reg) cells. More importantly, early studies in human tumors were mainly focused on CD4(+)CD25(+) T(reg) cells lacking interrogation of more specific markers such as FOXP3 expression. Although the increase of T(reg) cells seems to be a characteristic feature in most tumors, little is known about the molecular and cellular mechanisms responsible for the increase and maintenance of elevated levels of T(reg) cells in cancer. We will discuss earlier data in the context of recent findings in T(reg)-cell biology with a particular emphasis on CD4(+)CD25(high)FOXP3(+) T(reg) cells in human malignancies.
Dimerization of small GTPase Rab5 (2001)

Rab proteins are small GTPases, localized to distinct cellular compartments, regulating specific steps of intracellular membrane trafficking. One member of the Rab family, Rab5, consists of three isoforms, Rab5a, Rab5b, and Rab5c, which have been shown to play an important role in early events of endocytosis. Using the yeast two-hybrid system, we have identified several cytosolic proteins that interact with the Rab5b Q79L (decreasing intrinsic and GTPase-activating protein-stimulated GTPase activities). Surprisingly, most positive clones were Rab5b or Rab5c, indicating that Rab5 could dimerize among extra-isoforms in the yeast two-hybrid system. In vitro and in vivo chemical cross-linking assays demonstrated that lipid-unmodified wild-type Rab5b purified from Escherichia coli, wild-type Rab5b, or a dominant active form Rab5b Q79L expressed in human 293T cells dimerized. Furthermore, the same assays using a Rab5b R81A substitution mutant showed that the Arg81 in the Switch II region [the second GTP/GDP binding motif (residues 74-93)] was essential for Rab5b dimerization. These results suggest that Rab5 isoforms can be dimerized depending upon the GTP-bound conformation, but independent upon a lipid modification.
Glomerular C3c localization indicates ongoing immune deposit formation and complement activation in experimental glomerulonephritis. (1993)

In antibody-mediated glomerular disease, deposits of C3 (C3b) are common and are degraded by factor I to C3c and C3d. However, the kinetics of C3b degradation in glomerulonephritis have not been defined. To do this, we studied three models of complement-dependent glomerulonephritis with established C3 deposits (passive Heymann nephritis, cationized immunoglobulin G membranous nephropathy, and concanavalin A-anticoncanavalin A glomerulonephritis). C3b deposition was halted by administration of cobra venom factor, and the disappearance of C3c and C3d from glomeruli was measured with specific antibodies and quantitative fluorescence densitometry. Results showed that C3c deposits were reduced by over 85% within 24 hours in all three models. C3c clearance was unaffected by site or mechanism of deposit formation. C3d deposits persisted despite lack of ongoing complement activation. In passive Heymann nephritis when disease activity was monitored by urinary C5b-9 excretion, C3c was cleared in parallel with return of urine C5b-9 excretion to normal values. We conclude that glomerular deposits of C3c are cleared within 24 hours of cessation of complement activation. Positive staining for C3 utilizing antibody specific for the C3c portion documents recent complement activation usually reflecting new immune deposit formation.
Multiple regulatory effects of varicella-zoster virus (VZV) gL on trafficking patterns and fusogenic properties of VZV gH (1996)

Varicella-zoster virus (VZV) is an extremely cell-associated alphaherpesvirus; VZV infection is spread almost exclusively via cell membrane fusion. The envelope glycoprotein H (gH) is highly conserved among the herpesviruses. A virus-encoded chaperone, glycoprotein L (gL), associates with gH, and the gH:gL complex is required for gH maturation and membrane expression. We recently demonstrated that in the VZV system, the gH:gL complex facilitated cell membrane fusion and extensive polykaryon formation in transfected cells (K. M. Duus, C. Hatfield, and C. Grose, Virology 210:429-440, 1995). To further define the functions of the unusual VZV gL chaperone protein, we have performed a series of mutagenesis experiments with both gH and gL and analyzed the mutants by laser scanning confocal microscopy in a transfection-based fusion assay. We established the fact that immature gH exited the endoplasmic reticulum (ER) when coexpressed with either gE or gI and appeared on the cell surface in a patch pattern. A similar effect was observed on the cell surface with gH with a cytoplasmic tail mutagenized to closely resemble the vaccinia virus hemagglutinin cytoplasmic tail. Site-directed mutagenesis of the five gL cysteine residues demonstrated that four of five cysteines participated in the gL chaperone function required for proper maturation of gH. On the other hand, the same gL mutants facilitated transport of immature gH to the cell surface, where patching occurred. Studies of gL processing demonstrated that maturation did not require transport beyond the medial-Golgi; furthermore, gL was not detected in the outer cell membrane, nor was it secreted into the medium. Colocalization studies with 3,3'-dihexyloxa-cabocyanine iodide and N-(e-7-nitrobenz-2-oxa-1,3-diazol-4-yl-aminocaproyl)-D-erythro-sphingosine confirmed that gL was found primarily in the ER and cis/medial-Golgi when expressed alone. When all of these data were considered, they suggested a posttranslational gH:gL regulation model whereby the gL chaperone modulated gH expression via retrograde flow from the Golgi to the ER. In this schema, mature gL returns to the ER, where it escorts immature gH from the ER to the Golgi; thereafter, mature gH is transported from the trans-Golgi to the outer cell membrane, where it acts as a major fusogen.
Segmentation of urban scenes from aerial stereo imagery (2002)

Presents a focusing strategy for the 3-D reconstruction of urban scenes from aerial stereo pairs. It consists in segmenting the scene into above-ground objects (buildings or vegetation), and it relies on 3-D and radiometric analyses. The classification is able to cope with extended above-ground, adjacent objects, slopes, and it is robust to image and scene variability.
High Photoluminescence Quantum Yield in Band Gap Tunable Bromide Containing Mixed Halide Perovskites (2015)

Hybrid organic-inorganic halide perovskite based semiconductor materials are attractive for use in a wide range of optoelectronic devices because they combine the advantages of suitable optoelectronic attributes and simultaneously low-cost solution processability. Here, we present a two-step low-pressure vapor-assisted solution process to grow high quality homogeneous CH3NH3PbI3-xBrx perovskite films over the full band gap range of 1.6-2.3 eV. Photoluminescence light-in versus light-out characterization techniques are used to provide new insights into the optoelectronic properties of Br-containing hybrid organic-inorganic perovskites as a function of optical carrier injection by employing pump-powers over a 6 orders of magnitude dynamic range. The internal luminescence quantum yield of wide band gap perovskites reaches impressive values up to 30%. This high quantum yield translates into substantial quasi-Fermi level splitting and high "luminescence or optically implied" open-circuit voltage. Most importantly, both attributes, high internal quantum yield and high optically implied open-circuit voltage, are demonstrated over the entire band gap range (1.6 eV ≤ Eg ≤ 2.3 eV). These results establish the versatility of Br-containing perovskite semiconductors for a variety of applications and especially for the use as high-quality top cell in tandem photovoltaic devices in combination with industry dominant Si bottom cells.
Distinct and Non-Redundant Roles of Microglia and Myeloid Subsets in Mouse Models of Alzheimer's Disease (2011)

Mononuclear phagocytes are important modulators of Alzheimer's disease (AD), but the specific functions of resident microglia, bone marrow-derived mononuclear cells, and perivascular macrophages have not been resolved. To elucidate the spatiotemporal roles of mononuclear phagocytes during disease, we targeted myeloid cell subsets from different compartments and examined disease pathogenesis in three different mouse models of AD (APP(swe/PS1), APP(swe), and APP23 mice). We identified chemokine receptor 2 (CCR2)-expressing myeloid cells as the population that was preferentially recruited to β-amyloid (Aβ) deposits. Unexpectedly, AD brains with dysfunctional microglia and devoid of parenchymal bone marrow-derived phagocytes did not show overt changes in plaque pathology and Aβ load. In contrast, restriction of CCR2 deficiency to perivascular myeloid cells drastically impaired β-amyloid clearance and amplified vascular Aβ deposition, while parenchymal plaque deposition remained unaffected. Together, our data advocate selective functions of CCR2-expressing myeloid subsets, which could be targeted specifically to modify disease burden in AD.
Prescribing for obesity. Comment on the Royal College of Physicians' Working Party report on clinical management of overweight and obese patients with particular reference to drugs. (1999)

Physicians are reluctant to treat obesity despite the rapid increase in its prevalence in the UK and its associated health problems such as diabetes, coronary heart disease and hypertension. Overweight and obesity are chronic conditions that require long-term treatment. Any therapeutic programme should combine dietary restriction with physical activity and alterations to lifestyle. The use of pharmacological treatment as an adjunct to conventional treatment modalities is justified in certain circumstances. The criteria applied for the prescription of an anti-obesity drug should be comparable to that applied to the treatment of other relapsing disorders. The objective of the Royal College of Physicians' new report, Clinical management of overweight and obese patients with particular reference to the use of drugs, is the provision of such necessary guidance. Based on evidence from clinical trials, the recommendations of the report utilise a 12-week goal (outside a drug trial) of 5% body weight loss from the start of drug treatment. Failure to achieve this goal is an indication for stopping drug therapy. Safety and efficacy demand appropriate use of anti-obesity drugs in a supervised setting with clinicians weighing up likely medical benefit against possible risks.
Collaborating on the Rice Genome (2002)

Many independent efforts have now been made to sequence portions of or all of the rice genome. The finished rice genome will be instrumental in cereal crop improvement and will serve as a foundation for other cereal genomes. With so much rice sequence now generated, it's time to consider merging these efforts toward a common goal of a finished and accurate genome sequence. Syngenta is making its rice draft sequence available to support the international project (IRGSP). We encourage all genome sequencing groups to join together in establishing a collaborative effort to complete a finished rice genome sequence in the most efficient and timely fashion.

All parties involved in rice genome sequencing are invited to participate. I recommend that participating parties provide sequence assemblies and raw chromatogram data to facilitate finishing of the rice genome and establish an assembly and finishing strategy that maximizes the use of existing data and the current sequencing efforts. In addition, assemblies, quality files, and chromatograms should be made available to all participating parties upon completion. Participating parties should not have preferential early access to the entire assembly, and they should collaborate on a finished sequence publication.
microPET imaging of glioma integrin {alpha}v{beta}3 expression using (64)Cu-labeled tetrameric RGD peptide. (2005)

The high integrin and avidity and favorable biokinetics make (64)Cu-DOTA-E{E[c(RGDfK)](2)}(2) a promising agent for peptide receptor radionuclide imaging and therapy of integrin-positive tumors.
Synthesis of Demethylxanthohumol, a New Potent Apoptosis-Inducing Agent from Hops (2005)

Starting from commercially available phloracetophenone (= 1-(2,4,6-trihydroxyphenyl)ethanone), we synthesized demethylxanthohumol (4), a derivative of xanthohumol, devoid of 6'-O-methyl group. Both are prenylchalcones derived from hops (Humulus lupulus). The synthesis was accomplished by an aldol condensation between MOM-protected acetophenone 2 and MOM-protected benzaldehyde 3. The resulting demethylxanthohumol (4) displayed antiproliferative properties. Demethylxanthohumol (4) induced also apoptosis via the mitochondrial pathway in BJAB cells (Burkitt lymphoma cell line) and in primary lymphoblasts of childhood acute lymphoblastic leukemia (ALL).
Comparison of different cellular models measuring in vitro the whole human serum cholesterol efflux capacity (2006)

Two complementary cellular models providing SR-BI and ABCA1-dependent efflux should be used to measure the capacity of a biological fluid which contains a wide variety of components to promote cholesterol efflux.