gebhart/patrepeval huggingface dataset:
Inhibition of human immunodeficiency virus and growth of infected T cells by the immunosuppressive drugs cyclosporin A and FK 506. (1992)

The effects of the immunosuppressive drugs cyclosporin A and FK 506 were studied on cells chronically infected with human immunodeficiency virus type 1 (HIV-1) as well as on uninfected and newly infected cells. When cells chronically infected with HIV-1 or with HIV-2 were cocultivated with uninfected cells in the presence of cyclosporin A or FK 506 there was a delay in the formation of syncytia and of cytopathic effects. This inhibitory effect was not due to decreased membrane expression of CD4. In addition, there was an approximately 100-fold reduction in the yield of infectious HIV-1 when the infected cells were grown in the presence of these drugs, a finding consistent with other evidence of decreased HIV expression. Both drugs were found to inhibit the growth of chronically infected cells at concentrations that did not inhibit the growth of the uninfected cells. These results, demonstrating that cyclosporin A and FK 506 interfere with HIV production and selectively inhibit the growth of infected cells, suggest that they may be useful in the treatment of this infection and indicate further cellular targets for antiviral agents.
The Ste-Justine Adolescent Idiopathic Scoliosis Cohort Study (1994)

Among the 723 AIS subjects who had surgery at Ste. Justine's Hospital, 555 completed the questionnaire on back pain. Overall, 73% of patients treated surgically reported back pain in the past year. Proportions varied little by presurgery characteristics or by degree of surgical correction. The distal level of fusion did not influence, in any consistent way, the occurrence of back pain in later life nor the degree of disability associated with back pain. This study does not provide any evidence that extending the level of fusion down even as far as L4 will increase the prevalence of back pain in adulthood.
Working in cross-college roles in further education (1999)

Since incorporation, the FEFC funding formula and the development of new vocational qualifications, there has been a growth in posts with the function of co-ordinating policies across the whole college. key feature of these type of posts is that they usually have to fulfil that function without direct line management of the staff implementing the procedures or practices. Using the cohort who attended a training event on this topic, the article analyses these cross-college managers' perceptions of the nature of their managerial role in terms of the sources of power they se. The overall analysis suggests that there is a continuum of sources of power stemming from external requirements such that the stronger the external requirements the more coercive the source of a co-ordinator's power. The co-ordinators' main aim was to turn this and the other sources of power (reward, expert and referent) into legitimate power.
Screening Blockers Against a Potassium Channel with a Droplet Interface Bilayer Array (2008)

Droplet interface bilayers (DIBs) form between two lipid monolayer-encased aqueous droplets submerged in oil. Both major structural classes of membrane proteins, alpha-helix bundles and beta barrels, represented by channels and pores, respectively, spontaneously insert into DIBs when freshly expressed by cell-free transcription and translation. Electrodes embedded within the droplets allow the measurement of transmembrane ionic currents carried by individual channels and pores. On the basis of these findings, we have devised a chip-based approach for the rapid screening of blockers against ion channels. The technique is demonstrated here with the viral potassium channel, Kcv.
Chemical Characterization and DNA Fingerprinting of Griffonia simplicifolia Baill. (2019)

The combined chemical and molecular analysis of <i>G. simplicifolia</i> provided an interesting integrated approach for the unequivocal identification of commercial <i>G. simplicifolia</i> seeds.
On the Absorption Spectra of Complex Ions. I (1954)

In order to explain the origin of both absorption bands and lines of the octahedral normal complex ions in which the central metal ions belong to iron group elements, the erystalline field approximation interpreted in somewhat generalized sense is adopted. For this purpose the calculation of the energy matrix elements for d n ( n =1, 2, ..., 9) electron configuration in cubic field is performed by means of Racah's method. Comparison of the results with experiments will be made in the following paper.
Tissue-Specific Utilization of Menaquinone-4 Results in the Prevention of Arterial Calcification in Warfarin-Treated Rats (2003)

The effects of vitamin K (phylloquinone: K1 and menaquinone-4: MK-4) on vascular calcification and their utilization in the arterial vessel wall were compared in the warfarin-treated rat model for arterial calcification. Warfarin-treated rats were fed diets containing K1, MK-4, or both. Both K1 and MK-4 are cofactors for the endoplasmic reticulum enzyme gamma-glutamyl carboxylase but have a structurally different aliphatic side chain. Despite their similar in vitro cofactor activity we show that MK-4 and not K1 inhibits warfarin-induced arterial calcification. The total hepatic K1 accumulation was threefold higher than that of MK-4, whereas aortic MK-4 was three times that of K1. The utilization of K1 and MK-4 in various tissues was estimated by calculating the ratios between accumulated quinone and epoxide species. K1 and MK-4 were both equally utilized in the liver, but the aorta showed a more efficient utilization of MK-4. Therefore, the observed differences between K1 and MK-4 with respect to inhibition of arterial calcification may be explained by both differences in their tissue bioavailability and cofactor utilization in the reductase/carboxylase reaction. An alternative explanation may come from an as yet hypothetical function of the geranylgeranyl side chain of MK-4, which is a structural analogue of geranylgeranyl pyrophosphate and could interfere with a critical step in the mevalonate pathway.
Molecular immunological approaches to biotherapy of human cancers--a review, hypothesis and implications. (2006)

The immune system of the human organism comprises the innate system cells and the adaptive immune cells. The former include the hematopoietic cells, mast cells, basophils, monocytes, dendritic cells (DCs) and macrophages, and the latter include CD4+ T cells, CD8+ T cells, T regulatory cells (Tr) and B cells. The innate system DCs are the major antigen-presenting cells to Th(o) CD4+ T cells in lymph nodes that polarize into T helper 1 (Th1) and T helper 2 (Th2) cells, which subsequently produce different cytokines. Polarized Th1 cells produce interleukin (IL)-2, IL-12 and interferon (IFN)-gamma, and polarized Th2 cells and the hematopoietic cells produce IL-4, IL-5, IL-6, IL-10 and IL-13. In healthy individuals there is a Th1/Th2 cytokine balance, but during microbial-induced inflammation the pathogens induce an overproduction of the Th2 cytokines that inhibit the adaptive immune response against the pathogen. A review of studies on the Th1/Th2 cytokine balance in humans harboring different tumor types revealed that tumor cells induce increased Th2 cytokine levels in patients' sera that can serve as indicators for the existence of tumors. In this review, studies which correlated the presence of increased Th2 cytokines with the presence of early tumors and tumor progression are discussed. It was suggested that early monitoring of human populations for elevated Th2 cytokines may be used to identify individuals at an early stage of tumor development. A hypothesis is presented which suggests that increased Th2 cytokine synthesis in cancer patients, with early and late tumors, may be treated with Th2 cytokine antagonists. This new approach to cancer treatment will be supplemented by co-treatment with CpG oligodeoxynucleotides(ODNs) which reactivate the adaptive antitumor immune response. Studies that provide information on the efficiency of CpG ODN treatment of tumors in mice revealed that tumor regression was achieved by inducing Toll-like receptor 9+ plasmacytoid dendritic cells (PDCs) to release large amounts of type I interferons (IFN alpha and beta), which inhibit Th2 cytokine synthesis by hematopoietic cells and CD4+ T cells and enhance Th1 cytokine synthesis and activation of the adaptive immunity. It is hypothesized that Th2 cytokine (IL-4 and IL-6) antagonists may be an effective treatment for cancer patients since cytokine antagonists inhibit the increased Th2 cytokines in patients. Such an approach may replace Th2 cytokine monoclonal antibodies, the current treatment for cancer patients. It is hypothesized that the effective treatment of cancer patients with Th2 cytokine antagonists, combined with CpG ODNs, will lead to the inhibition of Th2 cytokines and reacTivation of the Th1-induced antitumor adaptive immunity that will destroy tumor cells and cure cancer patients.
Anti-flagellin (CBir1) phenotypic and genetic Crohnʼs disease associations (2007)

Anti-CBir1 serum reactivity in CD patients is independently associated with FS and complicated SB CD. Quantitative, but not qualitative, response to CBir1 is also significantly associated with the CD-associated NOD2 variants.
Human cytotoxic T-cell memory: long-lived responses to vaccinia virus (1996)

Peripheral T lymphocytes can be classified into two groups: naive and memory T cells. The focus of this study was to examine the duration of T-cell memory in humans. Vaccinia virus replicates in the cytoplasm of infected cells and is not thought to persist or become latent after the acute phase of infection. We identified long-lived vaccinia virus-specific memory cytotoxic T cells in adults who had been immunized against smallpox as children. Initially, we detected vaccinia virus-specific T cells in peripheral blood mononuclear cells while screening for human immunodeficiency virus type 1 (HIV-1)-specific T-cell responses in HIV-1-seropositive subjects. These individuals had not had contact with vaccinia virus since their primary immunization in early childhood. Several vaccinia virus-specific CD4+ T-cell clones were derived from these donors and characterized. Healthy, HIV-1-seronegative donors who had been immunized against smallpox many (35 to 50) years earlier were also screened for vaccinia virus-specific T-cell immunity. We found significant CD8+ and CD4+ cytotoxic T-cell responses to vaccinia virus after in vitro stimulation, indicating that these memory cells are maintained in vivo for many years. The peripheral blood mononuclear cells of young adults with no history of immunization against smallpox did not develop vaccinia virus-specific T-cell responses after in vitro stimulation. Precursor frequency analysis of the vaccinia virus-specific memory CD4+ T cells from a donor immunized with vaccinia virus 35 years earlier revealed a frequency of 1 in 65,920 CD4+ T cells. We concluded that specific vaccinia virus T-cell immunity can persist for up to 50 years after immunization against smallpox in childhood in the presumed absence of exposure to vaccinia virus.
The genesis of peritumoral vasogenic brain edema and tumor cysts: a hypothetical role for tumor-derived vascular permeability factor. (1994)

Cerebral edema and fluid-filled cysts are common accompaniments of brain tumors. They contribute to the mass effect imposed by the primary tumor and are often responsible for a patient's signs and symptoms. Cerebral edema significantly increases the morbidity associated with tumor biopsy, excision, radiation therapy, and chemotherapy. Both edema and cyst formation are thought to result from a deficiency in the blood-brain barrier, with consequent extravasation of water, electrolytes, and plasma proteins from altered tumor microvessels. The resultant expansion of the cerebral interstitial space contributes to the elevated intracranial pressure observed with brain tumors. Departure from the typical blood-brain barrier microvascular architecture may only partially explain the occurrence of edema and tumor cyst formation. Biochemical mediators have also been implicated in vascular extravasation. Vascular permeability factor or vascular endothelial growth factor (VPF/VEGF) is a protein that has recently been isolated from a variety of tumors including human brain tumors. VPFb is an extraordinarily potent inducer of both microvascular extravasation (edemagenesis) and the formation of new blood vessels (angiogenesis). Its role in tumor growth and progression would therefore appear pivotal. Herein, the author presents an updated account of the investigation of VPF. Historical and clinical perspectives of the study and treatment of tumor associated edema are provided. The efficacy of high-dose dexamethasone in the treatment of neoplastic brain edema is discussed. A hypothetical role for VPF in edemagenesis is presented and discussed. It is hoped that an expanded understanding of the mechanisms responsible for the genesis of edema will ultimately facilitate therapeutic intervention.
Mesoscopic model for solvent dynamics (1999)

Complex fluids such as polymers in solution or multispecies reacting systems in fluid flows often can be studied only by employing a simplified description of the solvent motions. A stochastic model utilizing a synchronous, discrete-time dynamics with continuous velocities and local multiparticle collisions is developed for this purpose. An H theorem is established for the model and the hydrodynamic equations and transport coefficients are derived. The results of simulations are presented which verify the properties of the model and demonstrate its utility as a hydrodynamics medium for the study of complex fluids.
Unified framework for magic state distillation and multiqubit gate synthesis with reduced resource cost (2017)

The standard approach to fault-tolerant quantum computation is to store information in a quantum error correction code, such as the surface code, and process information using a strategy that can be summarized as distill then synthesize. In the distill step, one performs several rounds of distillation to create high-fidelity logical qubits in a magic state. Each such magic state provides one good $T$ gate. In the synthesize step, one seeks the optimal decomposition of an algorithm into a sequence of many $T$ gates interleaved with Clifford gates. This gate-synthesis problem is well understood for multiqubit gates that do not use any Hadamards. We present an in-depth analysis of a unified framework that realizes one round of distillation and multiqubit gate synthesis in a single step. We call these synthillation protocols, and show they lead to a large reduction in resource overheads. This is because synthillation can implement a general class of circuits using the same number of $T$ states as gate synthesis, yet with the benefit of quadratic error suppression. This general class includes all circuits primarily dominated by control-control-$Z$ gates, such as adders and modular exponentiation routines used in Shor's algorithm. Therefore, synthillation removes the need for a costly round of magic state distillation. We also present several additional results on the multiqubit gate-synthesis problem. We provide an efficient algorithm for synthesizing unitaries with the same worst-case resource scaling as optimal solutions. For the special case of synthesizing controlled unitaries, our techniques are not just efficient but exactly optimal. We observe that the gate-synthesis cost, measured by $T$ count, is often strictly subadditive. Numerous explicit applications of our techniques are also presented.
Prolonged display or rapid internalization of the IgG-binding protein ZZ anchored to the surface of cells using the diphtheria toxin T domain (2001)

We have shown previously that the diphtheria toxin transmembrane domain (T) may function as a membrane anchor for soluble proteins fused at its C-terminus. Binding to membranes is triggered by acidic pH. Here, we further characterized this anchoring device. Soluble proteins may be fused at the N-terminus of the T domain or at both extremities, without modifying its membrane binding properties. This allows one to choose the orientation of the protein to be attached to the membrane. Maximum binding to the cell surface is reached within 1 h. Anchoring occurs on cells previously treated with proteinase K, suggesting that T interacts with the lipid phase of the membrane without the help of cell surface proteins. Binding does not permeabilize cells or affect cell viability, despite the fact that it permeabilizes liposomes and alters their structure. When attached to L929 fibroblasts, the proteins are not internalized and remain displayed at their surface for more than 24 h. When bound to K562 myeloid cells, the molecules are internalized and degraded. Thus, depending on the cell type, soluble proteins may be anchored to the surface of cells by the T domain for an extended time or directed towards an internalization pathway.
Overexpression of AKT2/protein kinase Bbeta leads to up-regulation of beta1 integrins, increased invasion, and metastasis of human breast and ovarian cancer cells. (2003)

To determine how AKT2 might contribute to tumor cell progression, a full-length, wild-type, human AKT2/protein kinase B (PKB)beta cDNA was transfected into a panel of eight human breast and ovarian cancer cells. AKT2 transfectants demonstrated increased adhesion and invasion through collagen IV because of up-regulation of beta1 integrins. In addition, AKT2 cells were more metastatic than control cells in vivo. Increased invasion by AKT2 was blocked by preincubation with an anti-beta1 integrin function blocking antibody, exposure to wortmannin, and by expression of phosphatase and tensin homologue tumor suppressor (PTEN). Confocal microscopy performed on transfected human breast cancer cells showed that unlike AKT1, AKT2 protein predominantly localized adjacent to the collagen IV matrix during cellular attachment. Overexpression of AKT2, but not AKT1 or AKT3, was sufficient to duplicate the invasive effects of phosphoinositide 3-OH kinase (PI3-K) transfected in breast cancer cells. Furthermore, expression of kinase dead AKT2(181 amino acid methionine [M]), and not kinase dead AKT1(179M) or AKT3(177M), was capable of blocking invasion induced by either human epidermal growth factor receptor-2 (HER-2) overexpression or by activation of PI3-K. Taken together, these data indicate that AKT2 mediates PI3-K-dependent effects on adhesion, motility, invasion, and metastasis in vivo.
Age‐Related changes of strychnine‐insensitive glycine receptors in rat brain as studied by in vitro autroradiography (1990)

Age-related changes of strychnine-insensitive glycine receptors in the rat brain were studied through quantitative in vitro autoradiography with 3H-glycine. 3H-glycine binding sites were most concentrated in the hippocampus, cerebral cortex, and olfactory tubercle, and moderate densities of binding sites were located in the striatum, nucleus accumbens, amygdala, and certain thalamic nuclei. Low densities of 3H-glycine binding sites were observed in the lateral septal nucleus, midbrain nuclei such as the superior colliculus and central gray matter, and granule cell layer of the cerebellum. In aged animals, severe decline of 3H-glycine binding sites was observed in the telencephalic regions including the hippocampus and cerebral cortex. On the other hand, decrease of binding sites in the midbrain nuclei was of lesser degree, and there were no changes in the cerebellum. These results suggest that the decrease of glycine receptors in particular brain regions has some relation with changes of neuronal functions associated with aging process in these areas. The glutamatergic neuronal system, particularly the N-methyl-D-aspartate (NMDA) subtype, has been considered to play an important role in learning and memory. Taking into consideration that strychnine-insensitive glycine receptors are contained in the NMDA receptor complex, the present study implies that the decrease of glycine receptors may be involved in impairments of learning and memory occurring in aged brains.
A new guide for guided reading: More guided, more reading (2019)

Guided reading and particularly the use of levelled texts has become the norm in many classrooms as a way of differentiating reading instruction in the classroom. But is it delivering on its promise? Is the demand for compliance having a negative impact on innovation? And is it time to work smarter not harder?
Steady state disposition of 5-aminosalicyclic acid following oral dosing. (1993)

In 18 healthy volunteers the steady state disposition of 5-aminosalicylic acid (5-ASA, mesalazine, CAS 89-57-6; 500 mg tid) was evaluated following the last oral dose in form of slow release tablets (Salofalk) either containing 500 mg or 250 mg 5-ASA. In none of the pharmacokinetic parameters of 5-ASA characterizing bioavailability (e.g. AUC approximately 6 ug/ml x h; Cmax approximately 1.7 micrograms/ml; tmax approximately 5 h; Cminss approximately 0.5 micrograms/ml; Cavss approximately 0.75 microgram/ml) differences between both forms were observed and the calculated 90% confidence intervals and point estimates indicated bioequivalence. Following the delayed absorption 5-ASA was rapidly eliminated (t1/2 = 1.4 +/- 0.5 h).
Optical probes and techniques for molecular contrast enhancement in coherence imaging (2005)

Optics has played a key role in the rapidly developing field of molecular imaging. The spectroscopic nature and high-resolution imaging capabilities of light provide a means for probing biological morphology and function at the cellular and molecular levels. While the use of bioluminescent and fluorescent probes has become a mainstay in optical molecular imaging, a large number of other optical imaging modalities exist that can be included in this emerging field. In vivo imaging technologies such as optical coherence tomography and reflectance confocal microscopy have had limited use of molecular probes. In the last few years, novel nonfluorescent and nonbioluminescent molecular imaging probes have been developed that will initiate new directions in coherent optical molecular imaging. Classes of probes reviewed in this work include those that alter the local optical scattering or absorption properties of the tissue, those that modulate these local optical properties in a predictable manner, and those that are detected utilizing spectroscopic optical coherence tomography (OCT) principles. In addition to spectroscopic OCT, novel nonlinear interferometric imaging techniques have recently been developed to detect endogenous molecules. Probes and techniques designed for coherent molecular imaging are likely to improve the detection and diagnostic capabilities of OCT.
NMR in cancer: XVII. dewar for a 53-inch superconducting NMR magnet. (1977)

A giant nitrogen-jacketed liquid-helium metal dewar built in this laboratory is described for housing 53-inch superconducting magnet used in the human FONAR experiments. This dewar is 10 feet tall, 6 feet wide, 18 inches deep, and weighs 1 1/2 tons. It consists of the main magnet hoop connected through a demountable gooseneck to a liquid helium reservoir tank.