gebhart/patrepeval huggingface dataset:
Characterization and Resolution of Evaporation-Mediated Osmolality Shifts That Constrain Microfluidic Cell Culture in Poly(dimethylsiloxane) Devices (2006)

Evaporation is a critical problem when handling submicroliter volumes of fluids. This paper characterizes this problem as it applies to microfluidic cell culture in poly(dimethylsiloxane) (PDMS) devices and provides a practical solution. Evaporation-mediated osmolality shifts through PDMS membranes with varying thicknesses (10, 1, 0.2, or 0.1 mm) were measured over 96 h. Even in humidified cell culture incubators, evaporation through PDMS and associated shifts in the osmolality of culture media was significant and prevented mouse embryo and human endothelial cell growth and development. A simple diffusion model, where the measured diffusion coefficient for PDMS matches reported values of approximately 10-9 m2/s, accounts for these evaporation and osmolality shifts. To overcome this problem, a PDMS-parylene-PDMS hybrid membrane was developed that greatly suppresses evaporation and osmolality shifts, yet possesses thinness and the flexibility necessary to interface with deformation-based microfluidic actuation systems, maintains the clarity for optical microscopy, and enables the successful development of single-cell mouse embryos into blastocysts under static conditions and culture of human endothelial cells under dynamic recirculation of submicroliter volumes of media. These insights and methods demonstrated specifically for embryo and endothelial cell studies will be generally useful for understanding and overcoming evaporation-associated effects in microfluidic cell cultures.
Higher homolog and N-ethyl analog of creatine as synthetic phosphagen precursors in brain, heart, and muscle, repressors of liver amidinotransferase, and substrates for creatine catabolic enzymes. (1985)

Tissues of chicks fed 5% N-methyl-3-guanidinopropionate (N-amidino-N-methyl-beta-alanine) for 12 days accumulated the following amounts of free plus phosphorylated derivatives as mumol/g, wet weight: brain, 5.5; heart, 7.3; leg muscle, 21.0; and breast muscle, 24.4. Since total creatine levels remained nearly the same in brain, N-methyl-3-guanidinopropionate-P provided brain with a supplemental reservoir of high energy phosphate. Tissues of rats fed 2% N-ethylguanidinoacetate (N-amidino-N-ethylglycine) accumulated large amounts of N-ethylguanidinoacetate-P, which has thermodynamic properties similar to creatine-P and is the kinetically most reactive synthetic phosphagen yet described. N-Ethylguanidinoacetate derivatives replaced creatine derivatives mole-for-mole, and the fraction of synthetic to total phosphagen after 19 days was 60% in heart, 54% in slow oxidative muscle, 42% in fast glycolytic muscles, and 22% in brain. N-Ethylguanidinoacetate served as a false end product co-repressor of liver arginine:glycine amidinotransferase levels in both chicks and chick embryos; N-methyl-3-guanidinopropionate and N-propylguanidinoacetate were relatively inactive. Creatinine amidohydrolase reversibly cyclized both N-ethylguanidinoacetate and N-propylguanidinoacetate with even lower Km values than for creatine derivatives, but it did not react significantly with N-methyl-3-guanidinopropionate, 3-guanidinopropionate, or 1-carboxy-methyl-2-imino-imidazolidine (cyclocreatine). Creatine amidinohydrolase also hydrolyzed N-acetimidoylsarcosine, but was relatively unreactive toward N-ethylguanidinoacetate, N-methyl-3-guanidinopropionate, 3-guanidinopropionate, and cyclocreatine. Amidinohydrolase can therefore be used to remove interfering creatine in assays of tissues for coexisting N-ethylguanidinoacetate or N-methyl-3-guanidinopropionate. Assays are now available to follow changes during metabolic stresses of any combination or all of the following phosphagens accumulated by the same tissue: creatine-P, N-ethylguanidinoacetate-P, cyclocreatine-P, N-methyl-3-guanidinopropionate-P, and homocyclocreatine-P.
Iterative interference cancellation for high spectral efficiency satellite communications (2002)

The problem of efficient utilization of the frequency spectrum for satellite systems is investigated; one which results as a consequence of highly crowding adjacent channels. An analytical characterization of the resulting interference channel is introduced and then exploited for interference cancellation. Two classes of cancelers are investigated. The first approach does not benefit from the forward error control (FEC) coding information which limits the performance gain. This motivates the second approach where a joint implementation of interference cancellation and decoding is developed using soft-input-soft-output (SISO) modules along with the iterative structure. It is shown that iterative interference cancellation techniques can achieve significant gains compared with the single-user matched filter receiver.
Biology of Human Immunoglobulin G Fc Receptors (1991)

Journal Article Biology of Human Immunoglobulin G Fc Receptors Get access Jan G J van de Winkel, Jan G J van de Winkel Department of Internal Medicine, The Ohio State University College of Medicine, Columbus Jan G.J. van de Winkel, present address: Department of Experimental Immunology, University Hospital Utrecht, G.04.614, P.O. Box 85500, 3508 GA Utrecht, The Netherlands. Address reprint requests there. Search for other works by this author on: Oxford Academic Google Scholar Clark L Anderson Clark L Anderson Department of Internal Medicine, The Ohio State University College of Medicine, Columbus Search for other works by this author on: Oxford Academic Google Scholar Journal of Leukocyte Biology, Volume 49, Issue 5, May 1991, Pages 511–524, https://doi.org/10.1002/jlb.49.5.511 Published: 01 May 1991 Article history Received: 28 November 1990 Accepted: 28 November 1990 Published: 01 May 1991
Open-Label Phase II Study Evaluating the Efficacy and Safety of Two Doses of Pertuzumab in Castrate Chemotherapy-Naive Patients With Hormone-Refractory Prostate Cancer (2007)

Pertuzumab has no clinically significant single-agent activity in castrate patients with HRPC at either of the tested dose levels. This may reflect the continued presence of significant levels of intraprostatic androgen driving androgen receptor signaling.
Development of lens sutures (2004)

Cylindrical map projections (CMPs) have been used for centuries as an effective means of plotting the features of a 3D spheroidal surfaces (e.g. the earth) on a 2D rectangular map. We have used CMPs to plot primate fiber cell organization from selected growth shells as a function of growth, development and aging. Lens structural parameters and features were derived from slit-lamp, light and transmission and scanning electron micrographs. This information was then used to create CMPs of lenses that were then correlated with azimuthal map projections (AMPs; projections that are radially symmetric around a central point [the poles]) to reveal different suture patterns during distinct time periods. In this manner, both lens fiber and suture branch locations are defined by degrees of longitude and latitude. CMPs and AMPs confirm that throughout defined periods of development, growth and ageing, increasingly complex suture patterns are formed by the precise ordering of straight and opposite end curvature fibers. However, the manner in which additional suture branches are formed anteriorly and posteriorly is not identical. Anteriorly, new branches are added between extant branches. Posteriorly, pairs of new branches are formed that progressively overlay extant branches. The advantage of using CMPs is that the shape and organization of every fiber in a growth shell can be observed in a single image. Thus, the use of CMPs to plot primate fiber cell organization has revealed more complex aspects of fiber formation that may explain, at least in part, changes in lens optical quality as a function of age and pathology. In addition, more accurate measurements of fiber length will be possible by incorporating the latitudinal and longitudinal locations of fibers.
Characterization of a leukemic cell line of the pre‐B phenotype (1979)

Abstract NALM‐6‐M1, one of eight leukemia cell lines cultured from the blood of a 19‐year‐old boy with non‐T, non‐B acute lymphoblastic leukemia (ALL) in relapse, was characterized. This cell line was found to be more than 90% cytoplasmic Immuno‐globulin positive (clg + ) for both mu heavy and lambda light chains, but surface immunoglobulln (slg) and complement receptor (CR) negative. NALM‐6‐M1 was clg∼ for alpha, delta, and gamma heavy chains and kappa light chain. About 45% of the cells exhibited sheep erythrocyte receptors. Approximately 12% of cells were positive for Fc receptors. Approximately 90% of the cultured cells had a deleted long arm of chromosome 5 (5q − ) and a marker Y chromosome. The remaining 10% of cells were found to have some additional chromosomal material on the long arm of chromosome 12, suggesting a partial translocation. No other karyotypic abnormalities were found. The cell line was found to react strongly with anti‐p23, 30, suggesting la‐like activity, but it only weakly stimulated normal lymphocytes in mixed leukocyte culture (MLC). The cells expressed HLA antigens. NALM‐6‐M1 failed to react with anti‐thymocyte serum (ATS), did not possess Epstein‐Barr membrane or nuclear antigens, nor did it exhibit phagocytosis for zymosan. NALM‐6‐M1 reacted positively with oil red O and Sudan black stains. On the basis of the clgM staining, NALM‐6‐M1 seems to be arrested at an early stage in B‐cell development and is considered to be of the pre‐B cell phenotype possessing a chromosomal abnormality.
Overview of the Fundamental Reactions and Degradation Mechanisms of NOx Storage/Reduction Catalysts (2004)

Abstract Over the last several years, nitrogen oxide(s) (NOx) storage/reduction (NSR) catalysts, also referred to as NOx adsorbers or lean NOx traps, have been developed as an aftertreatment technology to reduce NOx emissions from lean‐burn power sources. NSR operation is cyclic: during the lean part of the cycle, NOx are trapped on the catalyst; intermittent rich excursions are used to reduce the NOx to N2 and restore the original catalyst surface; and lean operation then resumes. This review will describe the work carried out in characterizing, developing, and understanding this catalyst technology for application in mobile exhaust‐gas aftertreatment. The discussion will first encompass the reaction process fundamentals, which include five general steps involved in NOx reduction to N2 on NSR catalysts; NO oxidation, NO2 and NO sorption leading to nitrite and nitrate species, reductant evolution, NOx release, and finally NOx reduction to N2. Major unresolved issues and questions are listed at the end of each of the reaction process fundamental sections. Degradation mechanisms and their effects on NSR catalyst performance are also described in relation to these generalized reactions. Since at this stage it does not appear possible to arrive at a complete and consistent mechanistic model describing the broad, existing experimental phenomenology for these processes, this review is primarily focused on summarizing and evaluating literature data and reconciling the many differences presented.
Isolation and characterization of retrovirus from cell lines of human adult T-cell leukemia and its implication in the disease. (1982)

A retrovirus (ATLV) was unequivocally demonstrated in human adult T-cell leukemia (ATL) cell lines by density (1.152-1.155 g/cm3) in a sucrose gradient, reverse transcriptase activity insensitive to actinomycin D, RNA labeled with [3H]uridine, and specific proteins with molecular weights of 11,000, 14,000, 17,000, 24,000, and 45,000. Furthermore, cDNA prepared by endogenous reaction with detergent-treated virions hybridized to 35S RNA containing poly(A), which was inducible by IdUrd treatment of a T-cell line derived from leukemic cells of the ATL, and the integrated form of ATLV proviral DNA was detected in T-cell lines derived from ATL. The ATLV proviral DNA was also detected in fresh peripheral lymphocytes from all five patients with ATL tested so far but not in those from healthy adults. On the other hand, ATLV protein of Mr 42,000 was found to be at least one of the ATL-associated antigen(s) that were previously detected in ATL-leukemic cells by all sera from patients with ATL. These findings on the close association of ATLV protein and proviral DNA with ATL are direct evidence for the possible involvement of the retrovirus ATLV in leukemogenesis of human ATL.
Unattended Continuous Positive Airway Pressure Titration. Clinical Relevance and Cardiorespiratory Hazards of the Method (1996)

Abstract The high cost of in-laboratory sleep studies and the insufficiency of available nights in most sleep laboratories has prompted clinical trials in an attempt to find an effective and safe method for continuous positive airway pressure (CPAP) titration in the unsupervised home environment. Earlier publications focused on the effectiveness of this new method but did not indicate the potential hazard and the selection criteria of patients. We accomplished a prospective study to evaluate a machine-controlled CPAP titration method in an unselected group of 21 patients with obstructive sleep apnea (OSA) requiring CPAP therapy. Unattended CPAP titrations were completed in the sleep laboratory, followed by conventional CPAP titration night. The CPAP levels assessed through automatic titrations showed strong agreement with those from the control nights. Fifteen patients had no pathologic cardiorespiratory events during machine-controlled titration. Undesirable cardiorespiratory complications developed in six patients with underlying cardiorespiratory disorder. Two patients had to stop the procedure. Two patients needed a reset of the actual pressure to baseline because of central apneas and one patient because of high-grade arrhythmia. The machine-controlled CPAP titration enabled reliable assessment of an effective pressure and appeared to be safe in selected patients with OSA. However, because the method caused significant adverse effects in some patients, we recommend that unattended CPAP titration not be attempted in patients with underlying cardiorespiratory disease.
A monolithic PDMS waveguide system fabricated using soft-lithography techniques (2005)

A monolithic waveguide system using poly(dimethyl siloxane) (PDMS) was designed, fabricated, and characterized. The waveguide demonstrated good confinement of light and relatively low attenuation at 0.40 dB/cm. The robustness and handling properties of the completed waveguides were excellent, and the process yield exceeded 96%. The waveguide did exhibit moderate temperature and humidity sensitivity but no temporal variation, and insertion loss remained stable over extended periods of time. Applications of this waveguide system in microscale sensing are immense, judging by the frequency of use of PDMS as the substrate for microfluidic and biomedical systems. The monolithic nature of the waveguides also reduces their cost and allows integration of optical pathways into existing PDMS-based microsystems.
Generation of Naïve Bovine Induced Pluripotent Stem Cells Using PiggyBac Transposition of Doxycycline-Inducible Transcription Factors (2015)

Generation of pluripotent stem cells (PSCs) in large domestic animals has achieved only limited success; most of the PSCs obtained to date have been classified as primed PSCs, which possess very little capacity to produce chimeric offspring. By contrast, mouse PSCs have been classified as naïve PSCs that can contribute to most of the tissues of chimeras, including germ cells. Here, we describe the generation of two different types of bovine induced pluripotent stem cells (biPSCs) from amnion cells, achieved through introduction of piggyBac vectors containing doxycycline-inducible transcription factors (Oct3/4, Sox2, Klf4, and c-Myc). One type of biPSCs, cultured in medium supplemented with knockout serum replacement (KSR), FGF2, and bovine leukemia inhibitory factor (bLIF), had a flattened morphology like human PSCs; these were classified as primed-type. The other type biPSCs, cultured in KSR, bLIF, Mek/Erk inhibitor, GSK3 inhibitor and forskolin, had a compact morphology like mouse PSCs; these were classified as naïve-type. Cells could easily be switched between these two types of biPSCs by changing the culture conditions. Both types of biPSCs had strong alkaline phosphatase activity, expressed pluripotent markers (OCT3/4, NANOG, REX1, ESRRβ, STELLA, and SOCS3), and formed embryoid bodies that gave rise to differentiated cells from all three embryonic germ layers. However, only naïve-type biPSCs showed the hallmarks of naïve mouse PSCs, such as LIF-dependent proliferation, lack of FGF5 expression, and active XIST expression with two active X chromosomes. Furthermore, naïve-type biPSCs could contribute to the inner cell mass (ICM) of host blastocysts and most tissues within chimeric embryos. This is the first report of generation of biPSCs with several characteristics similar to those of naïve mouse PSCs and a demonstrated potential to contribute to chimeras.
Effect of ibuprofen in patients with severe sepsis (1991)

Objective To evaluate the safety and physiologic actions of ibuprofen in patients with severe sepsis. Design Randomized, double-blind, placebo-controlled trial. Setting Three university hospital medical ICUs. Patients Twenty-nine patients with clinical evidence of sepsis and the need for hemodynamic monitoring with a pulmonary artery flotation catheter. Interventions Thirteen patients received placebo and 16 received ibuprofen that consisted of 600 mg (n = 11) or 800 mg (n = 5) iv over 20 mins, followed by three 800-mg doses administered as a rectal solution every 6 hrs. The initial iv dose was given within 4 hrs of the presumptive diagnosis of sepsis. Measurements and Main Results The peak circulating total ibuprofen concentration after the iv dose (49.4 ± 4.5 μg/mL, mean ± SEM) was higher than peak concentrations after the three rectal doses (17.0 ± 2.7, 16.4 ± 3.0, 16.0 ± 3.1 μg/ mL). Both routes of ibuprofen administration were well tolerated. Frequent monitoring for gastrointestinal bleeding and assessment of renal and hepatic function failed to demonstrate significant differences between ibuprofen and placebo. Because a trend for reduced creatinine clearance was observed at 8 hrs in the ibuprofen group, nephrotoxicity of this drug in sepsis cannot be excluded. Temperature decreased significantly within 4 hrs of the initial dose of investigational therapy in patients who received ibuprofen (38.5 ± 0.3° to 37.0 ± 0.2°C, p < .001). However, despite this significant change in temperature, we were unable to detect significant differences in hemodynamic and respiratory values or survival when ibuprofen-treated patients were compared with controls. Conclusions Ibuprofen was well tolerated when administered iv and rectally to patients with severe sepsis, although drug absorption was poor with the rectal route. Significant antipyretic effects of ibuprofen were demonstrated. Although an excellent safety profile characterized ibuprofen in this study, the absence of ibuprofen-associated toxicity may have been secondary to poor rectal absorption of the drug. Our results support the continued clinical investigation of ibuprofen in sepsis, using an all-intravenous route of administration.
Induction of experimental ulcerative colitis by Fusobacterium varium isolated from colonic mucosa of patients with ulcerative colitis (2002)

Background: Bacteria are implicated in certain forms of model chronic colitis but the identity and role of bacteria in human ulcerative colitis (UC) are uncertain. Aims: To isolate pathogenic bacteria from inflamed mucosa of patients with UC, to examine whether the bacteria have a toxin to Vero cells, and to determine whether the toxin induces UC-like lesions in animals. Methods: Bacteria were isolated from UC patients and supernatants from cultures were filtered and tested for cytotoxicity to Vero cells. Bacterial cells producing the cytotoxic supernatants were examined by polymerase chain reaction for verotoxin genes. Culture supernatants of cytotoxic strains were examined by high performance liquid chromatography for organic acid concentrations. Mice were given enemas containing organic acid at the mean concentration in the supernatants of cytotoxic strains to ascertain whether colonic lesions appear in UC. Results: Only supernatants from cultures of Fusobacterium varium killed Vero cells. Bacterial cells lacked verotoxin genes. Bacterial culture supernatants contained high concentrations of n -butyric acid and the mean concentration (32 mmol/l) was cytotoxic to Vero cells. Twenty four hours after mice were given enemas containing either butyric acid or F varium culture supernatants, colonic ulcers with crypt abscesses, inflammatory cell infiltration, and apoptotic changes were observed. Conclusions: Butyric acid in culture supernatants from cultures of F varium caused UC-like lesions in mice. This study indicates that F varium may be one of the elusive pathogenic factors in UC.
Knowledge-based configuration of computer systems using hierarchical partial choice (2002)

A novel inference scheme is introduced which is called hierarchical partial choice and which efficiently generates configurations from a knowledge base of structural descriptions of computer components. This approach combines the acquisition and maintenance advantages (over rule-based systems) of a declarative system with an inference scheme that efficiently generates solutions, often with little backtracking. The inference scheme is presented in the context of XKEWB, a shell for building computer configuration expert systems. The system contains several improvements over its predecessor Cossack.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Characterisation of proteins from two‐dimensional electrophoresis gels by matrix‐assisted laser desorption mass spectrometry and amino acid compositional analysis (1996)

Amino acid compositional analysis and peptide mass fingerprinting by matrix assisted laser desorption mass spectrometry have been used to characterise proteins obtained from two-dimensional electrophoresis (2-DE) separations of human cardiac proteins. A group of twelve protein spots was selected for analysis. The identities of eight of the proteins had been determined by conventional protein characterisation methods, two were unknown proteins and two had putative identities from protein database spot comparison. Amino acid analysis and peptide mass fingerprinting gave corresponding identities for seven of the twelve proteins, which also agreed with our initial identifications. Three proteins which had been identified previously were not confirmed in this study and putative identities were obtained for the two unknown proteins. The advantages, problems and use of amino acid analysis and peptide mass fingerprinting for the analysis of proteins from 2-DE are discussed. The data highlight the need to use orthogonal techniques for the unequivocal identification of proteins from 2-DE gels.
Automatic Intercept Service (1967)

The automatic intercept system described in this paper will route telephone calls for nonworking numbers to a centralized time division switch which connects the calling customer to a series of prerecorded announcements. The customer is told what number he has reached, the status of that number, and if available, the new number at which the called party may be reached.