gebhart/patrepeval huggingface dataset:
Cold stress-induced protein Rbm3 binds 60S ribosomal subunits, alters microRNA levels, and enhances global protein synthesis (2005)

The expression of Rbm3, a glycine-rich RNA-binding protein, is enhanced under conditions of mild hypothermia, and Rbm3 has been postulated to facilitate protein synthesis at colder temperatures. To investigate this possibility, Rbm3 was overexpressed as a c-Myc fusion protein in mouse neuroblastoma N2a cells. Cells expressing this fusion protein showed a 3-fold increase in protein synthesis at both 37 degrees C and 32 degrees C compared with control cells. Although polysome profiles of cells expressing the fusion protein and control cells were similar, several differences were noted, suggesting that Rbm3 might enhance the association of 40S and 60S ribosomal subunits at 32 degrees C. Studies to assess a direct interaction of Rbm3 with ribosomes showed that a fraction of Rbm3 was associated with 60S ribosomal subunits in an RNA-independent manner. It appeared unlikely that this association could explain the global enhancement of protein synthesis, however, because cells expressing the Rbm3 fusion protein showed no substantial increase in the size of their monosome and polysome peaks, suggesting that similar numbers of mRNAs were being translated at approximately the same rates. In contrast, a complex that sedimented between the top of the gradient and 40S subunits was less abundant in cells expressing recombinant Rbm3. Further analysis showed that the RNA component of this fraction was microRNA. We discuss the possibility that Rbm3 expression alters global protein synthesis by affecting microRNA levels and suggest that both Rbm3 and microRNAs are part of a homeostatic mechanism that regulates global levels of protein synthesis under normal and cold-stress conditions.
Effects of Chelating Agents as Additives on Preparation of Co-Mo Hydrodesulfurization Catalysts(Part 2). Effect of Nitrilotriacetic Acid Addition on Surface Structure. (1996)

Co-Mo/Al2O3調製時のニトリロ三酢酸 (NTA) 添加による水素化脱硫(HDS)活性向上の原因を明らかにするため, NTAの添加順序や添加量を種々に変えてベンゾチオフェン(BT)のHDS活性に与える影響について調べた。また, NTA添加触媒の硫化処理条件を種々に変えてみたところ, 無添加の場合と同じ条件が最適であることが分かった。次いで, NTAの添加によってCo-Mo/Al2O3触媒の表面構造が受ける影響を明らかにするため触媒前駆体についてXPSを, また硫化物触媒についてMo EXAFS, 吸着NOのFT-IR, NO吸着量をそれぞれ測定した。XPS測定の結果から, NTA添加による表面Co濃度の増加が示唆された。Mo EXAFSからは, NTAを添加して調製したCo-Mo/Al2O3 (NTA-CoMo) ではMo-MoおよびMo-S配位数が大きいことが示され, このことからNTAの添加によってMoS2類似の微結晶についてクラスターサイズの増大あるいは結晶化度の向上が示唆された。吸着NOのFT-IRスペクトルから, Moに吸着したNOのIR吸光度に対するCoに吸着したNOのIR吸光度の相対値は, NTA-CoMoの方がNTAを用いずに調製したCo-Mo/Al2O3(CoMo)よりも大きいことが明らかとなった。このことからNTAを添加した場合にはCoがMoの配位不飽和サイトをふさぐ位置を占めやすいものと推察され, またこのCoが高活性に寄与していることが示唆された。NO吸着量はNTA-CoMoの方がCoMoよりも少なかった。この点に関してBTに対するHDS活性はNTA-CoMoの方がCoMoよりも高いことを考慮すると, NTA-CoMoでは高活性な配位不飽和サイトが選択的に形成されているものと推察された。
Ab initio characterizations of molecular structures, conformation energies, and hydrogen-bonding properties for polyurethane hard segments (1993)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTAb initio characterizations of molecular structures, conformation energies, and hydrogen-bonding properties for polyurethane hard segmentsH. SunCite this: Macromolecules 1993, 26, 22, 5924–5936Publication Date (Print):October 1, 1993Publication History Published online1 May 2002Published inissue 1 October 1993https://pubs.acs.org/doi/10.1021/ma00074a014https://doi.org/10.1021/ma00074a014research-articleACS PublicationsRequest reuse permissionsArticle Views675Altmetric-Citations117LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Ternary alloy nanoparticles with controllable sizes and composition and electrocatalytic activity (2006)

The ability to tailor the size and composition of metal particles at the nanoscale could lead to improved or new catalytic properties. This paper reports the results of an investigation of the preparation and the characterization of platinum–nickel–iron (PtNiFe) ternary alloy nanoparticles. The synthesis of monolayer-capped ternary PtNiFe nanoparticles involved controlling the ratios of metal precursors, capping agents, and reducing agents in a single organic phase. The average diameters of the resulting nanocrystalline cores were well controlled between 1.4 and 1.8 nm with high monodispersity (±0.2–0.4 nm). The catalysts were prepared by loading the as-synthesized PtNiFe nanoparticles onto a high surface area carbon support and subsequent thermal treatment optimized for achieving effective shell removal and alloy formation, as well as controllable size, composition and metal loading. The catalysts were characterized using TEM, DCP-AES, FTIR, TGA, and XRD techniques. The catalysts were also examined for their intrinsic kinetic activities for the electrochemical oxygen reduction reaction. It is shown that the ternary catalysts are highly active towards molecular oxygen electrocatalytic reduction. Implications of our findings for the exploration of the new nanostructured catalyst materials for applications in fuel cell catalysis are also discussed.
Synthesis and Characterization of Tetrachlorodiarylethyne-Linked Porphyrin Dimers. Effects of Linker Architecture on Intradimer Electronic Communication (1998)

The effects of incorporating chloro groups at all ortho positions of a diphenylethyne linker that bridges the zinc and free base (Fb) components of a porphyrin dimer (ZnFbB(Cl(4))) have been investigated in detail via various static and time-resolved spectroscopic methods. The excited-state energy-transfer rate in ZnFbB(Cl(4)) ((134 ps)(-)(1)) is 5-fold slower than that in the corresponding dimer having an unsubstituted linker (ZnFbU, (24 ps)(-)(1)) but is only modestly slower than that in the dimer having o-methyl groups on the linker (ZnFbB(CH(3))(4), (115 ps)(-)(1)). The ground-state hole/electron-hopping rates in the oxidized bis-Zn analogues of all three dimers are much slower than the excited-state energy-transfer rates. There is no discernible difference between the hole/electron-hopping rates in the o-chloro- and o-methyl-substituted arrays. The similar ground- and excited-state dynamics observed for the o-chloro- and o-methyl-substituted arrays is attributed to the dominance of torsional constraints in mediating the extent of through-bond electronic communication. These constraints attenuate intradimer communication by restricting the rotation toward coplanarity of the phenyl rings of the linker and the porphyrin rings. Thus, the o-chloro groups on the linker decrease electronic communication via a steric, rather than purely electronic, mechanism.
Implementing “Science Across the World” in a Resource-Based Learning Activity regarding Sustainable Development Issues (2007)

The rapid development of science and technology has become a global issue in modern society, since it will not only bring conveniences into peoples lives but it may also cause extensive environmen ...
Selective Ablation of a Class of Amacrine Cells Alters Spatial Processing in the Retina (2004)

Several recent studies have suggested that the spatial tuning of retinal ganglion cells may be a more complex process than previously thought. The working hypothesis for many years was that the tuning was shaped by operations performed in the first synaptic layer of the retina, but recent work shows that operations in the second synaptic layer, involving amacrine cells, also play a significant role (Cook and McReynolds, 1998; Taylor, 1999; Flores-Herr et al., 2001). Although it is clear that amacrine cells are involved, the precise roles of the different amacrine subtypes in the many aspects of spatial tuning have not yet been established. Here we used a cell class ablation method to remove one subtype, the neuropeptide Y-expressing cells (NPY cells), and tapped into a part of the circuitry that tunes ganglion cells toward large spatial patterns (low spatial frequencies). When the subtype was ablated, ganglion cells tuned toward low spatial frequencies, both ON- and OFF-type cells, lost this preferential tuning. The effect was specific because ablation of another amacrine subtype did not produce it. Further analysis showed that the change in tuning was attributable to a decrease in the receptive field surround size of the ganglion cell. Other parameters, such as the size, strength, and asymmetry of the center and the strength of the surround, were not statistically significantly affected. These results thus show a mechanism for tuning cells to low spatial frequencies; an operation in the second synaptic layer, mediated by NPY cells, extends the surround of the ganglion cell.
FoldIndex(C): a simple tool to predict whether a given protein sequence is intrinsically unfolded (2005)

An easy-to-use, versatile and freely available graphic web server, FoldIndex is described: it predicts if a given protein sequence is intrinsically unfolded implementing the algorithm of Uversky and co-workers, which is based on the average residue hydrophobicity and net charge of the sequence. FoldIndex has an error rate comparable to that of more sophisticated fold prediction methods. Sliding windows permit identification of large regions within a protein that possess folding propensities different from those of the whole protein.
Cyclic RGD peptide analogs as antiplatelet antithrombotics (1992)

Stimulation of platelets activates GPIIbIIIa, the heterodimeric integrin receptor, to bind fibrinogen (Fg), which results in platelet aggregation. GPIIbIIIa/Fg binding inhibitors are potentially suitable for acute use during and after thrombolytic therapy as antithrombotic agents. Incorporation of the tripeptide sequence Arg-Gly-Asp (RGD), a common structural element of many integrin ligands, into cyclic peptides produced a series of peptides of the general structure BrAc-(AA1)-RGD-Cys-OH, which were prepared by solid-phase peptide synthesis. Cyclization was accomplished by reaction of the N-terminal bromoacetyl group with the cysteine sulfhydryl at pH 8 at high dilution, resulting in thioether-bridged cyclic peptides [cyclo-S-Ac-(AA1)-RGD-Cys-OH]. Use of alpha-substituted bromoacetyl groups gave rise to an analogous series of acetyl-substituted thioether-bridged cyclic peptides. Oxidation of the thioethers produced separable diastereomeric sulfoxide-bridged cyclic peptides. After thorough evaluation in a GPIIbIIIa ELISA assay and a platelet aggregation assay, G-4120 (70A; AA1 = D-Tyr; sulfoxide bridge) was selected for further investigation as an antithrombotic agent. G-4120 was equipotent in the platelet aggregation assay to kistrin, a highly potent inhibitor of fibrinogen-mediated platelet aggregation isolated from snake venom (IC50 = 0.15 microM).
Single-Walled Carbon Nanotube-Polymer Composites: Strength and Weakness (2000)

Can carbon nanotubes be efficient structural reinforcements for high-strength polymer composites? Here it is shown that, during loading, individual single-walled nanotubes pull out of their bundles (see Figure), making load transfer difficult. It is thus concluded that the effectiveness of reinforcement is determined by the stability and collective behavior of the bundles rather than the strength of individual nanotube components.
Geroconversion of aged muscle stem cells under regenerative pressure (2014)

Regeneration of skeletal muscle relies on a population of quiescent stem cells (satellite cells) and is impaired in very old (geriatric) individuals undergoing sarcopenia. Stem cell function is essential for organismal homeostasis, providing a renewable source of cells to repair damaged tissues. In adult organisms, age-dependent loss-of-function of tissue-specific stem cells is causally related with a decline in regenerative potential. Although environmental manipulations have shown good promise in the reversal of these conditions, recently we demonstrated that muscle stem cell aging is, in fact, a progressive process that results in persistent and irreversible changes in stem cell intrinsic properties. Global gene expression analyses uncovered an induction of p16(INK4a) in satellite cells of physiologically aged geriatric and progeric mice that inhibits satellite cell-dependent muscle regeneration. Aged satellite cells lose the repression of the INK4a locus, which switches stem cell reversible quiescence into a pre-senescent state; upon regenerative or proliferative pressure, these cells undergo accelerated senescence (geroconversion), through Rb-mediated repression of E2F target genes. p16(INK4a) silencing rejuvenated satellite cells, restoring regeneration in geriatric and progeric muscles. Thus, p16(INK4a)/Rb-driven stem cell senescence is causally implicated in the intrinsic defective regeneration of sarcopenic muscle. Here we discuss on how cellular senescence may be a common mechanism of stem cell aging at the organism level and show that induction of p16(INK4a) in young muscle stem cells through deletion of the Polycomb complex protein Bmi1 recapitulates the geriatric phenotype.
Absence of Effect of Varying Thr-Leu Codon Pairs on Protein Synthesis in a T7 System (2001)

The over-represented threonine-leucine (Thr-Leu) codon pair ACG CUG has been previously reported to be inhibitory to translation compared to the synonymous under-represented Thr-Leu codon pair ACC CUG, in an E. coli system in which the codon pairs were located either 3 and 4, or 6 and 7, or 9 and 10 codons downstream from the initiating codon for the message [Irwin, B., Heck, J. D., and Hatfield, G. W. (1995) J. Biol. Chem. 270, 22801-22806]. In the work reported here, these synonymous codon pairs were tested in a T7 system, with the codon pairs located either 14 and 15, or 6 and 7 codons downstream from the AUG start codon. In contrast to the reported findings in the E. coli system, there was no difference found in translation between mRNAs containing the respective codon pairs in the T7 system. The reasons for the different findings remain unclear, but presumably are a consequence of differences between the E. coli and T7 systems used to assay gene expression. Nevertheless, as a result of this work, it appears that the effect of varying codon pairs reported in the E. coli system is not due to a difference in translational step times through the respective codon pairs, as previously proposed.
Alterations in Internal Rotation and Alpha Angles Are Associated With Arthroscopic Cam Decompression in the Hip (2012)

Arthroscopic decompression results in improvement of the radiographic alpha angle and normalization of internal rotation in impingement-related disease of the hip. Internal rotation improvements can be achieved even in the setting of femoral retroversion.
Ileostomy polyps, adenomas, and adenocarcinomas. (1995)

Ileostomy polyps are uncommon and poorly described. The aim of this study was to undertake a retrospective clinicopathological review of ileostomy polyps. Seven patients with 60 polyps arising on ileostomies performed for ulcerative colitis were studied. The histopathological evaluation of archival ileostomy biopsy specimens, polypectomy or excision specimens, and clinical review of patient records was undertaken. Fifty of 60 polyps were inflammatory cap polyps and six further polyps were composed of granulation tissue only. They occurred anywhere on the stoma at any time after ileostomy construction and were strongly associated with overt stomal prolapse. Four neoplastic polyps were identified in two patients 27-36 years after ileostomy construction; all occurred at the mucocutaneous junction. One patient presented with a 2 cm polypoid invasive adenocarcinoma while in the second a 1.7 cm polypoid mucinous adenocarcinoma and a 0.7 cm ileal tubular adenoma with high grade dysplasia occurred at the site of excision of a cap polyp showing focal low grade adenomatous dysplasia six years previously. Neoplastic and non-neoplastic polyps could not be differentiated clinically. It was found that most ileostomy polyps are inflammatory cap polyps associated with stomal prolapse. Less common are polypoid adenomas or adenocarcinomas arising at the mucocutaneous anastomosis > 20 years after ileostomy construction. To prevent ileostomy carcinoma it is recommended that a biopsy of all polyps at the mucocutaneous anastomosis and of any non-prolapse associated polyps elsewhere on the stoma occurring > 15 years after ileostomy construction is done.
Circular Proteins in Plants (2001)

Much interest has been generated by recent reports on the discovery of circular (i.e. head-to-tail cyclized) proteins in plants. Here we report the three-dimensional structure of one of the newest such circular proteins, MCoTI-II, a novel trypsin inhibitor from Momordica cochinchinensis, a member of the Cucurbitaceae plant family. The structure consists of a small beta-sheet, several turns, and a cystine knot arrangement of the three disulfide bonds. Interestingly, the molecular topology is similar to that of the plant cyclotides (Craik, D. J., Daly, N. L., Bond, T., and Waine, C. (1999) J. Mol. Biol. 294, 1327-1336), which derive from the Rubiaceae and Violaceae plant families, have antimicrobial activities, and exemplify the cyclic cystine knot structural motif as part of their circular backbone. The sequence, biological activity, and plant family of MCoTI-II are all different from known cyclotides. However, given the structural similarity, cyclic backbone, and plant origin of MCoTI-II, we propose that MCoTI-II can be classified as a new member of the cyclotide class of proteins. The expansion of the cyclotides to include trypsin inhibitory activity and a new plant family highlights the importance and functional variability of circular proteins and the fact that they are more common than has previously been believed. Insights into the possible roles of backbone cyclization have been gained by a comparison of the structure of MCoTI-II with the homologous acyclic trypsin inhibitors CMTI-I and EETI-II from the Cucurbitaceae plant family.
Privacy Rights in Personal Information: HIPAA and the Privacy Gap Between Fundamental Privacy Rights and Medical Information, 19 J. Marshall J. Computer & Info. L. 535 (2001) (2001)

Advancements in computers and technology have affected nearly every aspect of health care. Although many of the effects of modern technology have benefited health care, a vast increase in the amount of people with access to medical information has led to numerous privacy concerns. In response to these new problems, and at the direction of Congress through the Health Insurance Portability & Accountability Act of 1996 (“HIPAA”), Health and Human Services (“HHS”) implemented the Privacy Rule. The Privacy Rule “protects privacy by regulating the ways in which certain medical information may be used by certain entities.” The constitutional right to privacy is “narrowly conceptualized” and only applies to “fundamental rights,” which are rights that are “implicit in the concept of ordered liberty.” There is a gap between the fundamental privacy rights and all other privacy rights, which are left to the states and are generally covered only by tort actions. The disclosure or use of medical information is generally not considered a violation of a fundamental right. There has also been little support behind protecting personal information through property rights. The Privacy Rule will help keep disclosure of patient information to a minimum. Although not all the affects of the Privacy Rule are yet known, it is apparent that it will help bridge the gap between fundamental privacy rights and all other privacy rights, specifically the right to the privacy of medical information.
Imaging mechanisms of force detected FMR microscopy (2000)

We demonstrate spatial resolution of ferromagnetic resonance in a microscopic sample of YIG using ferromagnetic resonance force microscopy (FMRFM). Measurements were performed on a small single crystal YIG film grown on a GGG substrate, roughly rectangular in shape 20 μm×∼150 μm and 3 μm thick. The perpendicular and parallel force geometries of FMRFM, in conjunction with an external bias field both parallel and perpendicular to the film, were used to scan the sample. This enabled the detection of strong signals, even at atmospheric pressure and room temperature. The fundamental and higher-order magnetostatic modes were observed to have 26–29 Gauss separation. The intensity of these modes exhibited spatial variation as the magnetic tip was scanned over the sample, and this behavior is qualitatively explained by DE theory. An improved fabrication method for magnet on cantilever was employed, which yielded a spatial resolution of 15 μm. These results demonstrate the potential of FMRFM for investigating the spatial dependence of ferromagnetic resonance, and for studying the anisotropy fields and exchange coupling effects within multilayer films and small magnetic systems.
Molecular Imaging (2001)

The term molecular imaging can be broadly defined as the in vivo characterization and measurement of biologic processes at the cellular and molecular level. In contradistinction to "classical" diagnostic imaging, it sets forth to probe the molecular abnormalities that are the basis of disease rather than to image the end effects of these molecular alterations. While the underlying biology represents a new arena for many radiologists, concomitant efforts such as development of novel agents, signal amplification strategies, and imaging technologies clearly dovetail with prior research efforts of our specialty. Radiologists will play a leading role in directing developments of this embryonic but burgeoning field. This article presents some recent developments in molecular sciences and medicine and shows how imaging can be used, at least experimentally, to assess specific molecular targets. In the future, specific imaging of such targets will allow earlier detection and characterization of disease, earlier and direct molecular assessment of treatment effects, and a more fundamental understanding of the disease process.