gebhart/patrepeval huggingface dataset:
Determination of Dextrose Equivalent Value and Number Average Molecular Weight of Maltodextrin by Osmometry (2008)

Dextrose equivalent (DE) value is the most common parameter used to characterize the molecular weight of maltodextrins. Its theoretical value is inversely proportional to number average molecular weight (M(n)), providing a theoretical basis for correlations with physical properties important to food manufacturing, such as: hygroscopicity, the glass transition temperature, and colligative properties. The use of freezing point osmometry to measure DE and M(n) was assessed. Measurements were made on a homologous series of malto-oligomers as well as a variety of commercially available maltodextrin products with DE values ranging from 5 to 18. Results on malto-oligomer samples confirmed that freezing point osmometry provided a linear response with number average molecular weight. However, noncarbohydrate species in some commercial maltodextrin products were found to be in high enough concentration to interfere appreciably with DE measurement. Energy dispersive spectroscopy showed that sodium and chloride were the major ions present in most commercial samples. Osmolality was successfully corrected using conductivity measurements to estimate ion concentrations. The conductivity correction factor appeared to be dependent on the concentration of maltodextrin. Equations were developed to calculate corrected values of DE and M(n) based on measurements of osmolality, conductivity, and maltodextrin concentration. This study builds upon previously reported results through the identification of the major interfering ions and provides an osmolality correction factor that successfully accounts for the influence of maltodextrin concentration on the conductivity measurement. The resulting technique was found to be rapid, robust, and required no reagents.
Synthesis and characterization of an octanucleotide containing the EcoRI recognition sequence with a phosphorothioate group at the cleavage site (1984)

The synthesis and characterization of an octanucleotide, d(GGsAATTCC), containing the recognition sequence of the EcoRI restriction endonuclease with a phosphorothioate internucleotidic linkage at the cleavage site are described. Two approaches for the synthesis of the RP and SP diastereomers of this octamer by the phosphite method are presented. The first consists of the addition of sulfur instead of H2O to the phosphite at the appropriate position during chain elongation. This method results in a mixture of diastereomers that can be separated by high-performance liquid chromatography after 5'-terminal phosphorylation. The second uses the presynthesized and diastereomerically pure dinucleoside phosphorothioate d[Gp(S)A] for the addition to the growing oligonucleotide chain as a block. The products are characterized by digestion with nuclease P1, fast atom bombardment mass spectrometry, 31P NMR spectroscopy, and conversion to d(GGAATTCC) by desulfurization with iodine. Only the RP diastereomers of d(GGsAATTCC) and its 5'-phosphorylated derivative are cleaved by EcoRI endonuclease. The rate of hydrolysis is slower than that of the unmodified octamer. The phosphorothioate octamer will be useful for the determination of the stereochemical course of the EcoRI-catalyzed reaction.
Temporal and Spatial Evolution of Laser-Induced Plasma from a Slag Sample (2015)

Laser-Induced Breakdown Spectroscopy (LIBS) has been demonstrated to be an effective method for slag analysis. In order to better clarify the nature of the plasma generated from a slag sample, an Nd:YAG pulse laser at 1064 nm wavelength was used to ablate the slag sample in air. The temporal and spatial evolutions of plasma parameters, including emission intensity, electronic density and plasma temperature, have been studied. It is shown that the electron density and plasma temperature drop off rapidly with the delay time as a result of plasma expansion and cooling. It has been found that the electron density of the whole plasma is close to that of the center regions in the plasma. The results of the spatial distributions on the two-dimensional plane have shown that there is a big region with lower electron density values caused by the recombination process in the center of the plasma. The maximum of the plasma temperature takes place at the regions close to the target, and the border of the plasma front-head has higher plasma temperatures than that of the center part.
Radiation Curing of Polymeric Materials (1990)

Since the introduction of photocuring of coatings as a viable industrial process well over a decade ago, the UV curing industry has followed a line of steady growth. This paper deals with the mechanisms and components which characterize photocurable coatings. Free radical and cationic photoinitiated polymerization are discussed in light of key review references from the recent literature. In addition, a section is dedicated to discussion of the lamp sources available for photocuring operations.
Programmed Death-1 (PD-1) is a Marker of Germinal Center-associated T Cells and Angioimmunoblastic T-Cell Lymphoma (2006)

Programmed death-1 (PD-1), a member of the CD28 costimulatory receptor family, is expressed by germinal center-associated T cells in reactive lymphoid tissue. In a study of a wide range of lymphoproliferative disorders, neoplastic T cells in 23 cases of angioimmunoblastic lymphoma were immunoreactive for PD-1, but other subtypes of T cell and B cell non-Hodgkin lymphoma, as well as classic Hodgkin lymphoma, did not express PD-1. The pattern of PD-1 immunostaining of neoplastic cells in angioimmunoblastic lymphoma was similar to that reported for CD10, a recently described marker of neoplastic T cells in angioimmunoblastic lymphoma. Tumor-associated follicular dendritic cells in cases of angioimmunoblastic lymphoma were found to express PD-L1, the PD-1 ligand. In addition, PD-1-positive reactive T cells formed rosettes around neoplastic L&H cells in 14 cases of nodular lymphocyte predominant Hodgkin lymphoma studied. These findings, along with data from previous studies, suggest that angioimmunoblastic lymphoma is a neoplasm of germinal center-associated T cells and that there is an association of germinal center-associated T cells and neoplastic cells in nodular lymphocyte predominant Hodgkin lymphoma. PD-1 is a useful new marker for angioimmunoblastic lymphoma and lends further support to a model of T-cell lymphomagenesis in which specific subtypes of T cells may undergo neoplastic transformation and result in specific, distinct histologic, immunophenotypic, and clinical subtypes of T-cell neoplasia.
[Expression of NKG2D ligands in multidrug-resistant nasopharyngeal carcinoma cell line CNE2/DDP and their effects on cytotoxicity of natural killer cells]. (2007)

Expression of NKG2D ligands on CNE2 and CNE2/DDP cells is correlated with NK cell-mediated lysis, and NK cells display higher cytotoxicity against parental CNE2 cells than the multidrug-resistant CNE2/DDP cells.
Hydroxylation of pendant vinyl groups of poly(3‐hydroxy undec‐10‐enoate) in high yield (2005)

Abstract Poly(3‐hydroxy undec‐10‐enoate) (PHU) was synthesized by feeding Pseudomonas oleovarans with 10‐undecenoic acid and nearly 100% hydroxylation of double bonds of PHU was achieved by hydroboration–oxidation reaction using 9‐borobicyclononane. The disappearance of vinyl signals of PHU in proton and 13 C NMR spectra was observed. Acetylation of hydroxylated PHU was conducted for molecular weight measurements. Molecular weight and polydispersity of hydroxylated PHU were found to be 10,000 and 1.23, respectively, while that of the originals was 32,000 and 2.42. Decomposition temperatures of original and hydroxylated PHU were 280 and 200°C, respectively. © 2005 Wiley Periodicals, Inc. J Appl Polym Sci 97: 2132–2139, 2005
Exploring the O -GlcNAc proteome: Direct identification of O -GlcNAc-modified proteins from the brain (2004)

The covalent modification of intracellular proteins by O-linked beta-N-acetylglucosamine (O-GlcNAc) is emerging as a crucial regulatory posttranslational modification akin to phosphorylation. Numerous studies point to the significance of O-GlcNAc in cellular processes such as nutrient sensing, protein degradation, and gene expression. Despite its importance, the breadth and functional roles of O-GlcNAc are only beginning to be elucidated. Advances in our understanding will require the development of new strategies for the detection and study of O-GlcNAc-modified proteins in vivo. Herein we report the direct, high-throughput analysis of O-GlcNAc-glycosylated proteins from the mammalian brain. The proteins were identified by using a chemoenzymatic approach that exploits an engineered galactosyltransferase enzyme to selectively label O-GlcNAc proteins with a ketone-biotin tag. The tag permits enrichment of low-abundance O-GlcNAc species from complex mixtures and localization of the modification to short amino acid sequences. Using this approach, we discovered 25 O-GlcNAc-glycosylated proteins from the brain, including regulatory proteins associated with gene expression, neuronal signaling, and synaptic plasticity. The functional diversity represented by this set of proteins suggests an expanded role for O-GlcNAc in regulating neuronal function. Moreover, the chemoenzymatic strategy described here should prove valuable for identifying O-GlcNAc-modified proteins in various tissues and facilitate studies of the physiological significance of O-GlcNAc across the proteome.
Percutaneous Automated Discectomy (1989)

An automated technique for percutaneous lumbar discectomy applies the principle of suction cutting. The indications are leg pain greater than back pain (sciatica) and failure of all conservative therapy. The typical neurological and roentgenographic abnormalities of a contained herniated lumbar disc are mandatory. The procedure is performed with a Nucleotome (Surgical Dynamics, San Leandro, California) that is a specially designed, 2-mm blunt-tipped suction-cutting device inserted via a posterolateral approach into the affected disc using fluoroscopic control. The results that can be expected with the technique are similar to chymopapain and are in the 70% success range. Automated percutaneous discectomy has a demonstrably low morbidity and can be performed under local anesthesia on an outpatient basis.
Real-time human motion analysis by image skeletonization (2002)

In this paper a process is described for analysing the motion of a human target in a video stream. Moving targets are detected and their boundaries extracted. From these, a "star" skeleton is produced. Two motion cues are determined from this skeletonization: body posture, and cyclic motion of skeleton segments. These cues are used to determine human activities such as walking or running, and even potentially, the target's gait. Unlike other methods, this does not require an a priori human model, or a large number of "pixels on target". Furthermore, it is computationally inexpensive, and thus ideal for real-world video applications such as outdoor video surveillance.
The human brain endothelial cell line hCMEC/D3 as a human blood‐brain barrier model for drug transport studies (2008)

The human brain endothelial capillary cell line hCMEC/D3 has been developed recently as a model for the human blood-brain barrier. In this study a further characterization of this model was performed with special emphasis on permeability properties and active drug transport. Para- or transcellular permeabilities (P(e)) of inulin (0.74 x 10(-3) cm/min), sucrose (1.60 x 10(-3) cm/min), lucifer yellow (1.33 x 10(-3) cm/min), morphine (5.36 x 10(-3) cm/min), propranolol (4.49 x 10(-3) cm/min) and midazolam (5.13 x 10(-3) cm/min) were measured. By addition of human serum the passive permeability of sucrose could be reduced significantly by up to 39%. Furthermore, the expression of a variety of drug transporters (ABCB1, ABCG2, ABCC1-5) as well as the human transferrin receptor was demonstrated on the mRNA level. ABCB1, ABCG2 and transferrin receptor proteins were detected and functional activity of ABCB1, ABCG2 and the ABCC family was quantified in efflux experiments. Furthermore, ABCB1-mediated bidirectional transport of rhodamine 123 was studied. The transport rate from the apical to the basolateral compartment was significantly lower than that in the inverse direction, indicating directed p-glycoprotein transport. The results of this study demonstrate the usefulness of the hCMEC/D3 cell line as an in vitro model to study drug transport at the level of the human blood-brain barrier.
Plasma Injection and Trapping in a Caulked Stuffed Cusp Magnetic Field (1969)

A minimum-average-B-stable toroidal magnetic well with high shear is obtained from the combined fields of a solenoid, axial conductors, and an internal ring conductor. Results of measurements of the injection and trapping of high-energy plasma from a coaxial gun are described. The confinement times are dependent on both particle energy and magnetic field. The density e-folding time is independent of the ion velocity under conditions of low shear and well depth. As they are increased the e-folding time varies roughly as 1/vi2. Trapped 0.9-keV plasma decays with an e-folding time that increases by a factor of 6 to 110 μsec as shear and magnetic well depth increase. The initial density of the plasma (0.5 to 3 keV) is ∼ 5 × 1011 cm−3 for field magnitudes resulting in a 40-μsec lifetime of 0.9-keV deuterons. This lifetime is independent of density over the range from ∼ 5 × 1011 cm−3 to 109 cm−3. The range of magnetic field magnitude is limited by the decreasing amount of plasma injected from the gun with increasing magnetic fields. The maximum lifetime of 110 μsec is commensurate with the combined effects of the ∼ 370 μsec support lifetime, a calculated ∼ 1000-μsec charge exchange time, and an anomalous lifetime of ∼ 190 μsec. A search for fluctuating electric fields that might be associated with such an anomalous loss shows the presence of low-amplitude 2-MHz oscillations but their possible role as a loss mechanism is not identified.
Anti-EGFR-Targeted Therapy for Esophageal and Gastric Cancers: An Evolving Concept (2009)

Cancers of the esophagus and stomach present a major health burden worldwide. In the past 30 years we have witnessed some interesting shifts in terms of epidemiology of esophago gastric cancers. Regardless of a world region, the majority of patients diagnosed with esophageal or gastric cancers die from progression or recurrence of their disease. While there are many active cytotoxic agents for esophageal and stomach cancers, their impact on the disease course has been modest at best. Median survival for patients with advanced gastroesophageal cancer is still less than a year. Therefore, novel strategies, based on our understanding of biology and genetics, are desperately needed. Epidermal growth factor receptor (EGFR) pathway has been implicated in pathophysiology of many epithelial malignancies, including esophageal and stomach cancers. EGFR inhibitors, small molecule tyrosine kinase inhibitors and monoclonal antibodies, have been explored in patients with esophageal and gastric cancers. It appears that tumors of the distal esophagus and gastroesophageal junction (GEJ) may be more sensitive to EGFR blockade than distal gastric adenocarcinomas. Investigations looking into potential molecular predictors of sensitivity to EGFR inhibitors for patients with esophageal and GEJ cancers are ongoing. While we are still searching for those predictors, it is clear that they will be different from ones identified in lung and colorectal cancers. Further development of EGFR inhibitors for esophageal and GEJ cancers should be driven by better understanding of EGFR pathway disregulation that drives cancer progression in a sensitive patient population.
Thaliporphine selectively inhibits expression of the inducible, but not the constitutive, nitric oxide synthase (1994)

Formation of nitrites/nitrates caused by lipopolysaccharide (LPS) in J774.2 macrophages was inhibited by thaliporphine, an aporphine derivative isolated from the plant Neolitsea konishii K. This inhibition of nitrite synthesis in LPS-stimulated macrophages by thaliporphine was similar to that by cycloheximide, NG-methyl-L-arginine (MeArg) and dexamethasone. Thaliporphine, but not MeArg, inhibited expression of inducible NO synthase without directly affecting enzyme activity. However, thaliporphine did not inhibit nitrite production by NO synthase that had already been induced by prior exposure to LPS for which any possible further induction was inhibited by cycloheximide. In endothelial cells, nitrite formation induced by bradykinin (in the presence of 0.2 mM Ca2+) was inhibited by MeArg. However, incubation of endothelial cells with dexamethasone, cycloheximide and thaliporphine did not affect this Ca(2+)-dependent nitrite production. Thaliporphine (0.1-100 microM) dose-dependently inhibited nitrite accumulation in macrophages stimulated by interleukin-1 beta (IL-1 beta) whereas nitrite formation induced by tumour necrosis factor alpha was not inhibited. LPS-stimulated IL-1 beta synthesis in macrophages was significantly inhibited by thaliporphine, but thaliporphine had only minimal effect on LPS-stimulated IL-1 beta synthesis in endothelial cells. These results demonstrate that thaliporphine inhibits LPS induction of NO synthase expression, and that the mechanism of action of thaliporphine is via inhibition of LPS-stimulated IL-1 beta synthesis in macrophages. In anaesthetized rats subjected to LPS, pretreatment with thaliporphine partially restored the fall in mean arterial pressure and the vascular hyporeactivity to noradrenaline 3 h after LPS injection. In conclusion, thaliporphine selectively inhibited expression of inducible NO synthase, and may thus hold potential for the treatment of endotoxaemia.
Antimelanoma Activity of CTL Generated from Peripheral Blood Mononuclear Cells After Stimulation with Autologous Dendritic Cells Pulsed with Melanoma gp100 Peptide G209-2M Is Correlated to TCR Avidity (2002)

Anchor residue-modified peptides derived from tumor-associated Ag have demonstrated success in engendering immune responses in clinical studies. However, tumor regression does not always correlate with immune responses. One hypothesis to explain this is that CTL resulting from such immunization approaches are variable in antitumor potency. In the present study, we evaluated this hypothesis by characterizing the activity of tumor-associated Ag-specific CTL. We chose an anchor residue-modified peptide from gp100, G209-2M, and used peptide-pulsed dendritic cells to generate CTL from PBMC of HLA-A2(+) normal donors. The specificities and avidities of the resulting CTL were evaluated. The results demonstrate that CTL generated by G209-2M can be classified into three categories: G209-2M-specific CTL which are cytotoxic only to G209-2M-pulsed targets; peptide-specific CTL which recognize both G209 and G209-2M peptides but not melanomas; and melanoma-reactive CTL which recognize peptide-pulsed targets as well as HLA-A2(+)gp100(+) melanomas. CTL that kill only peptide-pulsed targets require a higher peptide concentration to mediate target lysis, whereas CTL that lyse melanomas need a lower peptide concentration. Increasing peptide density on melanomas by loading exogenous G209 peptide enhances their sensitivity to peptide-specific CTL. High avidity CTL clones also demonstrate potent antimelanoma activity in melanoma model in nude mice. Injection of G209 peptide around transplanted tumors significantly enhances the antitumor activity of low avidity CTL. These results suggest that peptide stimulation causes expansion of T cell populations with a range of avidities. Successful immunotherapy may require selective expansion of the higher-avidity CTL and intratumor injection of the peptide may enhance the effect of peptide vaccines.
Transgenic mice with increased Cu/Zn-superoxide dismutase activity: animal model of dosage effects in Down syndrome. (1987)

Down syndrome, the phenotypic expression of human trisomy 21, is presumed to result from a 1.5-fold increase in the expression of the genes on human chromosome 21. As an approach to the development of an animal model for Down syndrome, several strains of transgenic mice that carry the human Cu/Zn-superoxide dismutase gene have been prepared. These animals express the transgene in a manner similar to that of humans, with 0.9- and 0.7-kilobase transcripts in a 1:4 ratio, and synthesize the human enzyme in an active form capable of forming human-mouse enzyme heterodimers. Cu/Zn-superoxide superoxide dismutase activity is increased from 1.6- to 6.0-fold in the brains of four transgenic strains and to an equal or lesser extent in several other tissues. These animals provide a unique system for studying the consequences of increased dosage of the Cu/Zn-superoxide dismutase gene in Down syndrome and the role of this enzyme in a variety of other pathological processes.
Multiple conformations of amino acid residues in ribonuclease A (1986)

The highly refined 1.26 A structure (R = 0.15) of phosphate-free bovine pancreatic ribonuclease A was modeled with 13 residues having discrete multiple conformations of side chains. These residues are widely distributed over the protein surface, but only one of them, Lys 61, is involved in crystal packing interactions. The discrete conformers have no unusual torsion angles, and their interactions with the solvent and with other atoms of the protein are similar to those residues modeled with a single conformation. For three of the residues--Val 43, Asp 83, and Arg 85--two correlated conformations are found. The observed multiple conformations on the protein surfaces will be of significance in analyzing structure-function relationships and in performing protein engineering.
The Value of Inter-well and Single Well Tracer Technology for De-Risking and Optimizing a CEOR Process - Caracara Field Case (2015)

Abstract Recent advances in tracer technology deliver accurate data in a cost-efficient manner. Tracer applications typically aim to improve reservoir description by solving connectivity questions, to evaluate and derisk the potential for secondary and tertiary recovery processes, along with inflow profiling and allocation of injected water or gas. A previous paper (SPE-164930) presented the strategy and planning of a chemical EOR (CEOR) process for sandstone reservoirs of the Caracara Sur Field, Colombia. The project is moving forward and laboratory studies have been successfully completed to define an optimum alkaline surfactant polymer (ASP) formulation. Along with simulation studies, comprehensive inter-well (IWTT) and single well tracer tests (SWTT) have been carried out to provide valuable input to understand aquifer drift, the reservoir flooding process and to analyse residual oil saturations to waterflood (Sorw). This paper presents these two tracer applications: IWTTs were performed in Caracara Sur sandstone reservoir zones to characterize aquifer drift. Tracer response was used as input for analysing the implications of chemical dilution by the aquifer and also as an input for history matching, resulting in a more reliable reservoir model.The results of the first SWTT in Caracara Sur Field (and - to our knowledge - in Colombia), are presented. By measuring Sorw, the potential for CEOR application has been confirmed. An ASP one-spot test has subsequently been completed and followed-up by a second SWTT to evaluate the efficiency of the chemical formulation. Results are currently under evaluation but appear favourable. Planning for expanded use of CEOR in Caracara Sur continues. Lessons learnt and best practices for implementing tracer technology in similar fields include: Use of tracer backflow tests (TBFT) to derisk SWTTs; also the use of FBA passive tracers.Planning, operating and analysing the results of tracer-tests in-house rather than sub-contracting to third parties increases flexibility, increases internal knowledge and is cost-effective.