gebhart/patrepeval huggingface dataset:
THE LORANTHACEAE (MISTLETOE) HEMIPARASITES VASCULAR TREES AND SHRUBS AGROECOSYSTEMS OF THE SUD-COMOÉ REGION, DENSE EVERGREEN FOREST AREA OF COTE D'IVOIRE (2015)

The Loranthaceae are vascular plants hemiparasites, commonly called mistletoes are now a threat to many orchards. The present study carried in the agroecosystems of Sud-Comoe district, in a forest area of Cote d’Ivoire, aims to inventory the parasites species and determine the rate and Loranthaceae infestation intensity on tree orchards. The results obtained in this work show that the attacks of parasites in orchards plants are very important. These attacks are caused by 7 parasites species recorded on the feet of cocoa, coffee, rubber and spontaneous species of agroecosystems. Hundred sixteen host species, gathered into 77 genus and 35 families were parasitized. Tapinanthus bangwensis and Phragmanthera capitata are two ubiquitous species in the study area with an abundance Tapinanthus bangwensis on cocoa and coffee trees. The results show that the cocoa and rubber trees are the most infected. The average rates of infestation observed cocoa is 65.79 ± 21.17 and 60.70 ± 20.89 p.c. for rubber trees. The intensity of infection was 2.22 ± 0.54 tufts per plant for rubber against 1.65 ± 0.40 tufts per plant for cocoa. The degree of infestation orchards appeared to be related to age orchards in maintenance of orchards, a location of plants in the plots and the presence of parasites vulnerable spontaneous species. In the study area, mechanical control method is used by 84.40 p.c. of the interviewed farmers. But this method of struggle against parasites is perilous in rubber production, because of the tufts located high on the tree and branches fragility.
On the Use of Neural Network Ensembles in QSAR and QSPR (2002)

Despite their growing popularity among neural network practitioners, ensemble methods have not been widely adopted in structure-activity and structure-property correlation. Neural networks are inherently unstable, in that small changes in the training set and/or training parameters can lead to large changes in their generalization performance. Recent research has shown that by capitalizing on the diversity of the individual models, ensemble techniques can minimize uncertainty and produce more stable and accurate predictors. In this work, we present a critical assessment of the most common ensemble technique known as bootstrap aggregation, or bagging, as applied to QSAR and QSPR. Although aggregation does offer definitive advantages, we demonstrate that bagging may not be the best possible choice and that simpler techniques such as retraining with the full sample can often produce superior results. These findings are rationalized using Krogh and Vedelsby's decomposition of the generalization error into a term that measures the average generalization performance of the individual networks and a term that measures the diversity among them. For networks that are designed to resist over-fitting, the benefits of aggregation are clear but not overwhelming.
Time-Domain Measurements of Nanomagnet Dynamics Driven by Spin-Transfer Torques (2005)

We present time-resolved measurements of gigahertz-scale magnetic dynamics caused by torque from a spin-polarized current. By working in the time domain, we determined the motion of the magnetic moment throughout the process of spin-transfer-driven switching, and we measured turn-on times of steady-state precessional modes. Time-resolved studies of magnetic relaxation allow for the direct measurement of magnetic damping in a nanomagnet and prove that this damping can be controlled electrically using spin-polarized currents.
Correlation of the kinetics of electron transfer activity of various eukaryotic cytochromes c with binding to mitochondrial cytochrome c oxidase. (1976)

1. A detailed study of cytochrome c oxidase activity with Keilin-Hartree particles and purified beef heart enzyme, at low ionic strength and low cytochrome c concentrations, showed biphasic kinetics with apparent Km1 = 5 x 10(-8) M, and apparent Km2 = 0.35 to 1.0 x 10(-6) M. Direct binding studies with purified oxidase, phospholipid-containing as well as phospholiptaining aid-depleted, demonstrated two sites of interaction of cytochrome c with the enzyme, with KD1 less than or equal to 10(-7) M, and KD2 = 10(-6) M. 2. The maximal velocities as low ionic strength increased with pH and were highest above ph 7.5. 3. The presence and properties of the low apparent Km phase of the kinetics were strongly dependent on the nature and concentration of the anions in the medium. The multivalent anions, phosphate, ADP, and ATP, greatly decreased the proportion of this phase and similarly decreased the amount of high affinity cytochrome c-cytochrome oxidase complex formed. The order of effectiveness was ATP greater than ADP greater than P1 and since phosphate binds to cytochrome c more strongly than the nucleotides, it is concluded that the inhibition resulted from anion interaction with the oxidase. 4mat low concentrations bakers' yeast iso-1, bakers' yeast iso-1, horse, and Euglena cytochromes c at high concentrations all attained the same maximal velocity. The different proportions of low apparent Km phase in the kinetic patterns of these cytochromes c correlated with the amounts of high affinity complex formed with purified cytochrome c oxidase. 5. The apparent Km for cytochrome c activity in the succinate-cytochrome c reductase system of Keilin-Hartree particles was identical with that obtained with the oxidase (5 x 10(-8) M), suggesting the same site serves both reactions. 6. It is concluded that the observed kinetics result from two catalytically active sites on the cytochrome c oxidase protein of different affinities for cytochrome c. The high affinity binding of cytochrome c to the mitochondrial membrane is provided by the oxidase and at this site cytochrome c can be reduced by cytochrome c1. Physiological concentrations of ATP decrease the affinity of this binding to the point that interaction of cytochrome c with numerous mitochondrial pholpholipid sites can competitively remove cytochrome c from the oxidase. It is suggested that this effect of ATP represents a possible mechanism for the control of electron flow to the oxidase.
Nonnegative Matrix Factorization in Polynomial Feature Space (2008)

Plenty of methods have been proposed in order to discover latent variables (features) in data sets. Such approaches include the principal component analysis (PCA), independent component analysis (ICA), factor analysis (FA), etc., to mention only a few. A recently investigated approach to decompose a data set with a given dimensionality into a lower dimensional space is the so-called nonnegative matrix factorization (NMF). Its only requirement is that both decomposition factors are nonnegative. To approximate the original data, the minimization of the NMF objective function is performed in the Euclidean space, where the difference between the original data and the factors can be minimized by employing L(2)-norm. In this paper, we propose a generalization of the NMF algorithm by translating the objective function into a Hilbert space (also called feature space) under nonnegativity constraints. With the help of kernel functions, we developed an approach that allows high-order dependencies between the basis images while keeping the nonnegativity constraints on both basis images and coefficients. Two practical applications, namely, facial expression and face recognition, show the potential of the proposed approach.
Impact of die-to-die and within-die parameter fluctuations on the maximum clock frequency distribution (2002)

A processor maximum clock frequency (FMAX) distribution is significantly influenced by the magnitude of critical path delay deviations resulting from both die-to-die (inter-die) and within-die (intra-die) fluctuations. FMAX is a measurement performed at wafer sort in which each functional die is tested for its maximum operating clock frequency. Die-to-die fluctuations resulting from lot-to-lot, wafer-to-wafer and some sources of the within-wafer variations affect every element on a chip equally. Conversely, within-die fluctuations consisting of both random and systematic components produce a nonuniformity of electrical characteristics across the chip. The FMAX distribution model is based upon statistical simulations of critical paths for a 0.25/spl mu/m Pentium-family processor.
Revision of the American Joint Committee on Cancer Staging System for Breast Cancer (2002)

This revised staging system will be officially adopted for use in tumor registries in January 2003.
Multi-agent event recognition in structured scenarios (2011)

We present a framework for the automatic recognition of complex multi-agent events in settings where structure is imposed by rules that agents must follow while performing activities. Given semantic spatio-temporal descriptions of what generally happens (i.e., rules, event descriptions, physical constraints), and based on video analysis, we determine the events that occurred. Knowledge about spatio-temporal structure is encoded using first-order logic using an approach based on Allen's Interval Logic, and robustness to low-level observation uncertainty is provided by Markov Logic Networks (MLN). Our main contribution is that we integrate interval-based temporal reasoning with probabilistic logical inference, relying on an efficient bottom-up grounding scheme to avoid combinatorial explosion. Applied to one-on-one basketball, our framework detects and tracks players, their hands and feet, and the ball, generates event observations from the resulting trajectories, and performs probabilistic logical inference to determine the most consistent sequence of events. We demonstrate our approach on 1hr (100,000 frames) of outdoor videos.
Activin signaling through activin receptor type II causes the cachexia-like symptoms in inhibin-deficient mice. (1996)

Activins and inhibins, members of the transforming growth factor-beta superfamily, are involved in diverse physiological and developmental processes. We have previously shown that mice deficient in alpha-inhibin develop gonadal sex cord-stromal tumors at an early age. The tumor development is rapidly followed by a wasting syndrome that includes severe weight loss, hepatocellular necrosis around the central vein, and depletion of the parietal cells in the glandular stomach. The liver histology in inhibin-deficient mice is similar to the pathological effects of short-term treatment of rats and mice with recombinant activin A. Consistent with these findings, we have shown that the gonadal tumors in the inhibin-deficient mice secrete high levels of activins. In addition, Northern blot analysis has localized activin receptor type II (ActRII) to the liver. Based on these studies, we postulated that tumor-produced activins act through ActRII to cause the wasting syndrome in inhibin-deficient mice. To test this hypothesis and determine the significance of elevated levels of activin signaling through ActRII in vivo, we generated compound homozygous mutant mice deficient in both alpha-inhibin and ActRII. Despite the continued development of gonadal sex cord-stromal tumors and elevated serum levels of activin A and B, the compound homozygous mutant mice suffered no unusual weight loss, and the stomachs and livers of the majority of the mice were histologically normal. These results demonstrate that increased levels of activin signaling through ActRII in hepatocytes and the glandular stomach causes the hepatocellular necrosis and depletion of parietal cells in the glandular stomach as well as the severe weight loss in vivo.
Update on the evaluation and management of functional dyspepsia. (2011)

Dyspepsia affects up to 40 percent of adults each year and is often diagnosed as functional (nonulcer) dyspepsia. The defining symptoms are postprandial fullness, early satiation, or epigastric pain or burning in the absence of causative structural disease. These symptoms may coexist with symptoms of functional gastrointestinal disorders, such as gastroesophageal reflux and irritable bowel syndrome, as well as anxiety and depression. The history and physical examination can help identify other possible causes of the symptoms. Warning signs of serious disease, such as cancer, are unintended weight loss, progressive dysphagia, persistent vomiting, evidence of gastrointestinal bleeding, and a family history of cancer. In these cases, more extensive laboratory investigation, imaging, and endoscopy should be considered as clinically indicated. During the initial evaluation, a test-and-treat strategy to identify and eradicate Helicobacter pylori infection is more effective than empiric treatment and more cost-effective than initial endoscopy. Eradication of H. pylori helps one out of 15 patients with functional dyspepsia diagnosed by endoscopy, but may not be cost-effective. Treatment options that may be beneficial for functional dyspepsia include histamine H2 blockers, proton pump inhibitors, and prokinetic agents. Although psychotropic medications and psychological interventions have no proven benefit in patients with functional dyspepsia, they are appropriate for treating common psychiatric comorbidities.
Pulmonary vasodilation by inhaled nitric oxide after endothelial injury (1992)

Inhaled nitric oxide gas (NO) has recently been shown to reverse experimentally induced pulmonary vasoconstriction. To examine the effect of free radical injury and methylene blue exposure on inhaled NO-induced pulmonary vasodilation we studied ventilated rabbit lungs perfused with Krebs solution containing 3% dextran and indomethacin. When NO gas (120 ppm) was added to the inhaled mixture for 3 min, the elevated pulmonary arterial perfusion pressure (Ppa) induced by the thromboxane analogue U-46619 was significantly reduced [8 +/- 2 (SE) mmHg]. Acetylcholine similarly reduced Ppa (9 +/- 1 mmHg). After free radical injury and methylene blue exposure, inhaled NO again produced significant vasodilation (5 +/- 1 and 9 +/- 2 mmHg, respectively), but acetylcholine resulted in an increase in Ppa (-9 +/- 3 and -4 +/- 1 mmHg, respectively). These data demonstrate that pulmonary vasodilation produced by inhaled NO is unaffected by free radical injury or methylene blue in the intact lung despite concomitant reversal of acetylcholine-induced vasodilation.
Clinical results with titanium crowns fabricated with machine duplication and spark erosion (1989)

A new method for fabrication of metal crowns has been developed by one of the authors (M.A.). There are two principles involved: machine duplication of models and electric discharge machining. The metal used is pure unalloyed titanium, which is processed as a coping and later covered by a composite resin. In 1986, 205 separate titanium crowns were made on 149 patients. One year later 192 crowns on 137 patients could be examined. Five crowns had been replaced by new ones owing to fracture of the composite resin. In accordance with the CDA quality evaluation system the following results were obtained for the remaining 187 crowns: margin integrity, 186 excellent or satisfactory (99.5%); anatomic form, 185 excellent or satisfactory (98.9%); and surface and color, 181 excellent or satisfactory results (96.8%). The 1-year results are promising, and further follow-up studies will be made.
Silicon surface tunnel transistor (1995)

A silicon surface tunneling transistor structure, based on lateral band-to-band tunneling, is presented. The theory, fabrication, and operation of the device is described. Band-to-band tunneling is controlled by the bias on the gate of the device which modulates the width of the tunneling barrier. The operation of the device is confirmed in both experimental results and two-dimensional computer simulations. Dramatic differences in drain current are observed for different gate bias.
Adrenalectomy and response to corticosterone and MSH in the genetically obese yellow mouse (1989)

Animals with the viable yellow (Avy/a) gene and their corresponding lean control black mice (a/a) were adrenalectomized or sham adrenalectomized, and changes in body weight, body composition, corticosterone, and GDP-binding to mitochondria isolated from interscapular brown adipose tissue (IBAT) were measured. Adrenalectomy slowed the weight gain of both the yellow obese mice and the black lean mice, but the reduction was greater in the yellow mice. Food intake was significantly reduced in the yellow mice. Adrenalectomy in the yellow mouse was associated with an increase in lean mass and a significant decrease in weights of fat depots. Blood glucose concentrations of the adrenalectomized yellow mice were reduced to levels similar to those of lean mice, but insulin levels, although lower than sham-adrenalectomized yellow mice, remained significantly higher than in lean animals. GDP binding to IBAT mitochondria increased after adrenalectomy in both phenotypes to values that were similar. Corticosterone replacement in adrenalectomized yellow mice produced a dose-dependent increase in body weight that was associated with a decrease in muscle weight and an increase in adipose tissue weight. Both desacetyl-melanocyte-stimulating hormone (MSH) and alpha-MSH interacted with corticosterone to increase body weight gain of adrenalectomized yellow mice. Desacetyl-MSH was more effective than alpha-MSH on increasing adipose tissue and liver weights. The effects of desacetyl-MSH on food intake, weight gain, and tissue weights were independent of the adrenal gland or of corticosterone.
Embryonic dermal condensation and adult dermal papilla induce hair follicles in adult glabrous epidermis through different mechanisms (2006)

Hair induction in the adult glabrous epidermis by the embryonic dermis was compared with that by the adult dermis. Recombinant skin, composed of the adult sole epidermis and the embryonic dermis containing dermal condensations (DC), was transplanted onto the back of nude mice. The epidermis of transplants formed hairs. Histology on the induction process demonstrated the formation of placode-like tissues, indicating that the transplant produces hair follicles through a mechanism similar to that underlying hair follicle development in the embryonic skin. An isolated adult rat sole skin piece, inserted with either an aggregate of cultured dermal papilla (DP) cells or an intact DP between its epidermis and dermis, was similarly transplanted. The transplant produced hair follicles. Histology showed that the epidermis in both cases surrounded the aggregates of DP cells. The epidermis never formed placode-like tissues. Thus, it was concluded that the adult epidermal cells recapitulate the embryonic process of hair follicle development when exposed to DC, whereas they get directly into the anagen of the hair cycle when exposed to DP. The expression pattern of Edar and Shh genes, and P-cadherin protein during the hair follicle development in the two types of transplants supported the above conclusion.
Cross-species induction of luminescence in the quorum-sensing bacterium Vibrio harveyi (1997)

Different species of bacteria were tested for production of extracellular autoinducer-like activities that could stimulate the expression of the luminescence genes in Vibrio harveyi. Several species of bacteria, including the pathogens Vibrio cholerae and Vibrio parahaemolyticus, were found to produce such activities. Possible physiological roles for the two V. harveyi detection-response systems and their joint regulation are discussed.
Developing a predictive model of quality of experience for internet video (2013)

Improving users' quality of experience (QoE) is crucial for sustaining the advertisement and subscription based revenue models that enable the growth of Internet video. Despite the rich literature on video and QoE measurement, our understanding of Internet video QoE is limited because of the shift from traditional methods of measuring video quality (e.g., Peak Signal-to-Noise Ratio) and user experience (e.g., opinion scores). These have been replaced by new quality metrics (e.g., rate of buffering, bitrate) and new engagement centric measures of user experience (e.g., viewing time and number of visits). The goal of this paper is to develop a predictive model of Internet video QoE. To this end, we identify two key requirements for the QoE model: (1) it has to be tied in to observable user engagement and (2) it should be actionable to guide practical system design decisions. Achieving this goal is challenging because the quality metrics are interdependent, they have complex and counter-intuitive relationships to engagement measures, and there are many external factors that confound the relationship between quality and engagement (e.g., type of video, user connectivity). To address these challenges, we present a data-driven approach to model the metric interdependencies and their complex relationships to engagement, and propose a systematic framework to identify and account for the confounding factors. We show that a delivery infrastructure that uses our proposed model to choose CDN and bitrates can achieve more than 20\% improvement in overall user engagement compared to strawman approaches.
Investigación aplicada: entonces y hoy (2007)

Investigación aplicada: entonces y hoy
Multidimensional Fourier Transforms and Image Processing with Finite Scanning Apertures (1973)

The Mertz and Gray analysis of image scanning in terms of multidimensional Fourier transforms is reformulated using a different coordinate system. A simplified mathematical notation is used for this analysis leading to scanning equations that emphasize the importance of the scanning apertures. Other image processes involving scanning are described in terms of their multidimensional Fourier transforms. These include a novel two-dimensional screening technique, and its comparison with a simple screening method and with conventional photographic screening processes. The effect on video spectra of aperture filtering and an analysis of television line interlacing are also given. The conditions for the validity of the unidimensional analysis of some of these image processing systems are indicated.
Transduction of Calcium Stress through Interaction of the Human Transcription Factor CBF with the Proximal CCAAT Regulatory Element of the grp78 /BiP Promoter (1995)

Mammalian GRP78/BiP is a stress-inducible 78-kDa endoplasmic reticulum (ER) protein with molecular chaperone and calcium-binding properties. The transactivation of grp78 by the calcium ionophore A23187 provides a model system with which to study the signal transduction that allows mammalian cells to sense calcium depletion in intracellular stores and activate transcription of specific genes. Linker-scanning mutation analysis of the grp78 promoter reveals that the single most important regulatory element is C1, which contains a CCAAT motif most proximal to the TATA sequence. The C1 element is crucial for mediating the stimulatory effects by the upstream regulatory elements under normal and stress conditions. In this report, we establish that the heteromeric CCAAT-binding factor CBF is the major component of the C1-binding factor (C1F) in human cells. A GGAGG motif flanking the CCAAT sequence also contributes to high-affinity C1F/CBF binding. We show here that the binding of C1F in vitro is sensitive to the concentration of calcium ions. At high calcium ion concentrations, the C1F-binding activity is lower because of a higher dissociation rate. This binding characteristic correlates with the induction of grp78 transcription in response to the depletion of intracellular calcium stores. The strikingly similar behavior of C1F from nuclear extracts of control and A23187-treated cells further suggests that C1F itself does not undergo any major inherent changes after calium depletion stress. Rather, its binding property could be modulated by the immediate calcium ionic environment in stressed and nonstressed cells. On the basis of the in vitro and in vivo site occupancies of C1F and other stress-inducible changes of upstream regulatory complexes, we present a model to explain how C1F and other upstream factors can synergistically activate grp78 transcription in calcium-depleted cells.