gebhart/patrepeval huggingface dataset:
Human melanoma antigen O-acetylated ganglioside GD3 is recognized by Cancer antennarius lectin. (1988)

A lectin that can specifically bind to O-acetylsialic acids, found in glycoproteins and gangliosides, was purified to homogeneity from a crab Cancer antennarius (crab lectin) (Ravindranath, M. H., Higa, H. H., Cooper, E. L., and Paulson, J. C. (1985) J. Biol. Chem. 260, 8850-8856; Correction (1986) J. Biol. Chem. 261, 1983; Ravindranath, M. H., and Paulson, J. C. (1987) Methods Enzymol. 138, 520-527). We tested lectin binding to human melanoma cell lines to identify O-acetylsialylated gangliosides on the melanoma cell surface. The highest degree of binding of the crab lectin was demonstrated on a melanoma cell line, UCLASO-M25. To confirm that the binding was due to O-acetylsialic acid in the alkali-labile gangliosides, the gangliosides were isolated and purified from M25 cells and individually coated onto sheep asialoerythrocytes, which served as targets in an agglutination assay using the lectin. The crab lectin agglutinated the asialo-sheep erythrocytes coated with alkali-labile gangliosides, but the lectin failed to agglutinate the asialoerythrocytes coated with GM3, GD3, and base-treated gangliosides. Subsequently, the purified alkali-labile M25 ganglioside was base-treated and applied to TLC, and we found that it was converted to a slower migrating species identical to the disialolactosylceramide (GD3). These results indicate that O-acetyl GD3 expressed on the melanoma cell surface is recognized by the lectin. Because O-acetyl GD3 is not expressed on human normal tissues, we examined the capability of O-acetyl GD3 to induce immune responses in man. Sera from patients with melanoma were tested against M25 cells in an immuneadherence assay, and those positive to the M25 cell line were further tested for specificity to O-acetyl gangliosides. The presence of autoantibodies to O-acetyl-GD3 in melanoma sera was confirmed by blocking of the antigen sites on M25 cells by the lectin or preabsorption of the sera with erythrocytes bearing O-acetyl gangliosides. The data provide evidence that O-acetyl-GD3 may represent an important tumor marker for detection and treatment of human melanoma.
Nitric Oxide and Carbon Monoxide Modulate Oscillations of Olfactory Interneurons in a Terrestrial Mollusk (2000)

Spontaneous or odor-induced oscillations in local field potential are a general feature of olfactory processing centers in a large number of vertebrate and invertebrate species. The ubiquity of such oscillations in the olfactory bulb of vertebrates and analogous structures in arthropods and mollusks suggests that oscillations are fundamental to the computations performed during processing of odor stimuli. Diffusible intercellular messengers such as nitric oxide (NO) and carbon monoxide (CO) also are associated with central olfactory structures in a wide array of species. We use the procerebral (PC) lobe of the terrestrial mollusk Limax maximus to demonstrate a role for NO and CO in the oscillatory dynamics of the PC lobe: synthesizing enzymes for NO and CO are associated with the PC lobes of Limax, application of NO to the Limax PC lobe increases the local field potential oscillation frequency, whereas block of NO synthesis slows or stops the oscillation, the bursting cells of the PC lobe that drive the field potential oscillation are driven to higher burst frequency by application of NO, the nonbursting cells of the PC lobe receive trains of inhibitory postsynaptic potentials, presumably from bursting cells, due to application of NO, and application of CO to the PC lobe by photolysis of caged CO results in an increase in oscillation frequency proportional to CO dosage.
Atherosclerotic Plaque Rupture: an Overview (2000)

Atherosclerotic luminal narrowing is determined by plaque mass and local change in vessel size (remodeling). Regardless of its size, a plaque may rupture with high risk of subsequent thrombus-mediated acute clinical events such as myocardial infarction and stroke. The risk of plaque rupture depends more on plaque type than on plaque size or stenosis severity. Major determinants of a plaque's vulnerability to rupture are: 1) size and consistency of the lipid-rich atheromatous core; 2) thickness of the fibrous cap covering the core; and 3) ongoing inflammation and repair within the cap. Plaque disruption tends to occur at points where the plaque surface is weakest and most vulnerable which coincide with points where stresses, resulting from biomechanical and haemodynamic forces acting on plaques, are concentrated. Therefore, both plaque vulnerability (intrinsic disease) and rupture triggers (extrinsic forces) are important for plaque disruption. The former predisposes the plaque to rupture while the latter may precipitate it. The resultant thrombotic response determines the clinical presentation and the outcome. J Clin Basic Cardiol 2000; 3: 81?6.
Improved Synthesis of Proline-Derived Ni(II) Complexes of Glycine:  Versatile Chiral Equivalents of Nucleophilic Glycine for General Asymmetric Synthesis of α-Amino Acids (2003)

A synthetically practical and operationally convenient method for preparing (S)-2-[N-(N'-benzylprolyl)amino]benzophenone (BPBP) and hitherto unknown (S)-2-[N-(N'-benzylprolyl)amino]-4-methylbenzophenone (4-Me-BPBP), (S)-2-[N-(N'-benzylprolyl)amino]-5-nitrobenzophenone (5-NO(2)-BPBP), and their corresponding Ni(II) complexes with glycine [GlyNi(II)BPBP], a widely used chiral equivalent of nucleophilic glycine, and new analogues [GlyNi(II)-4-Me-BPBP] and [GlyNi(II)-5- NO(2)-BPBP] is described. The key step of the method is the synthetically efficient amid bond formation between the corresponding o-aminobenzophenones, featuring significant steric shielding and low nucleophilicity of the amino functionality as well as sterically constrained (S)-N-benzylproline (BP).
Narrow gap coplanar slow wave electrode for travellingwaveelectro-optic modulators (1995)

A novel coplanar slow wave electrode geometry suitable for travelling wave electro-optic modulators was fabricated on semi-insulating GaAs and measured up to 40 GHz. With these electrodes, modulator voltages can be applied across very small gaps while keeping the microwave loss low, the phase velocity matched and the characteristic impedance close to 50 Ω.
Role of Peptide YY in the Endocrine Control of Digestion (1993)

Peptide YY is released into the circulation after ingestion of a meal, a response that is markedly enhanced in patients with malabsorption. The enhanced release of peptide YY slows gastric emptying and transit of meals through the small intestine. The net effect is increased efficiency of digestion and absorption of nutrients. Once the efficiency of nutrient utilization is optimized and the delivery of unabsorbed nutrients to the distal gut decreased, peptide YY release is inhibited. As peptide YY slows colonic transit, it could also improve salvage of unabsorbed nutrients by enhancing bacterial production of volatile fatty acids and their subsequent absorption by the colonic mucosa.
The Application of Expert Systems and Neural Networks to Gas Turbine Prognostics and Diagnostics (1999)

Condition monitoring of engine gas generators plays an essential role in airline fleet management. Adaptive diagnostic systems are becoming available that interpret measured data, furnish diagnosis of problems, provide a prognosis of engine health for planning purposes, and rank engines for scheduled maintenance. More than four hundred operations worldwide currently use versions of the first or second generation diagnostic tools. Development of a third generation system is underway which will provide additional system enhancements and combine the functions of the existing tools. Proposed enhancements include the use of artificial intelligence to automate, improve the quality of the analysis, provide timely alerts, and the use of an Internet link for collaboration. One objective of these enhancements is to have the intelligent system do more of the analysis and decision making, while continuing to support the depth of analysis currently available at experienced operations. This paper presents recent developments in technology and strategies in engine condition monitoring including: (1) application of statistical analysis and artificial neural network filters to improve data quality, (2) neural networks for trend change detection, and classification to diagnose performance change, and (3) expert systems to diagnose, provide alerts and to rank maintenance action recommendations.
Hydrogenation of Biopterin and Its Analogues: Application for the Convenient Procedure of Biopterin Cafactor and Related 5,6,7,8-tetrahydropterins (1985)

A large scale and stereoselective hydrogenation of biopterin to l6R)-5.6,7,8-tetrahydrobiopterinw a s developed.The procedure was applied for various hydroxyalkylpterins such as neopterin L(1~~,2'~)-6-i1',2~,3'-trihydroxypropyl)pterinI and diastereomers of biopterin.
Optimization and Validation of a Plaque Reduction Neutralization Test for the Detection of Neutralizing Antibodies to Four Serotypes of Dengue Virus Used in Support of Dengue Vaccine Development (2013)

A dengue plaque reduction neutralization test (PRNT) to measure dengue serotype-specific neutralizing antibodies for all four virus serotypes was developed, optimized, and validated in accordance with guidelines for validation of bioanalytical test methods using human serum samples from dengue-infected persons and persons receiving a dengue vaccine candidate. Production and characterization of dengue challenge viruses used in the assay was standardized. Once virus stocks were characterized, the dengue PRNT(50) for each of the four serotypes was optimized according to a factorial design of experiments approach for critical test parameters, including days of cell seeding before testing, percentage of overlay carboxymethylcellulose medium, and days of incubation post-infection to generate a robust assay. The PRNT(50) was then validated and demonstrated to be suitable to detect and measure dengue serotype-specific neutralizing antibodies in human serum samples with acceptable intra-assay and inter-assay precision, accuracy/dilutability, specificity, and with a lower limit of quantitation of 10.
IL-9 induces chemokine expression in lung epithelial cells and baseline airway eosinophilia in transgenic mice (1999)

Recent data have identified IL-9 as a key cytokine in determining susceptibility to asthma. These data are supported by the finding that allergen-exposed IL-9-transgenic mice exhibit many features that are characteristic of human asthma (airway eosinophilia, elevated serum IgE and bronchial hyperresponsiveness) as compared to the background strain. A striking feature of these animals is a robust peribronchial and perivascular eosinophilia after allergen challenge, suggesting that IL-9 is a potent factor in regulating this process. In an attempt to gain insights into the molecular mechanism governing IL-9 modulation of lung eosinophilia, we investigated the ability of this cytokine to induce the expression of CC-type chemokines in the lung because of their effect on stimulating eosinophil chemotaxis. Here we show that IL-9-transgenic mice in contrast to their congenic controls exhibit baseline lung eosinophilia that is associated with the up-regulation of CC-chemokine expression in the airway. This effect appears to be through a direct action of IL-9 because the addition of recombinant IL-9 to primary epithelial cultures and cell lines induced the expression of these chemokines in vitro. These data support a mechanism for IL-9 in regulating the expression of eosinophil chemotactic factors in lung epithelial cells.
Statistics notes: Measurement error (1996)

Several measurements of the same quantity on the same subject will not in general be the same. This may be because of natural variation in the subject, variation in the measurement process, or both. For example, table 1 shows four measurements of lung function in each of 20 schoolchildren (taken from a larger study1). The first child shows typical variation, having peak expiratory flow rates of 190, 220, 200, and 200 l/min.

View this table:

Table 1 
Repeated peak expiratory flow rate (PEFR) measurements for 20 schoolchildren



Let us suppose that the child has a “true” average value over all possible measurements, which is what we really want to know when we make a measurement. Repeated measurements on the same subject will vary around the true value because of measurement error. The standard deviation of repeated measurements on the same subject …
Structure and dynamics of a lipoic acid-arsenical adduct (1989)

The lipoic acid-phenyldichloroarsine adduct was prepared in methanol, and the structure and molecular motions of this adduct were studied. The results showed that a six-membered heteroatom adduct was formed. One-dimensional and two-dimensional NMR spectroscopy was used to confirm the structure and assign some of the resonances in the proton and carbon spectra. Spin-lattice relaxation times of the various carbon atoms indicated that the overall molecular reorientation time (tau R) of the molecule is 0.02 ns at 30 degrees C. An Arrhenius plot of the data showed that the activation energy (Ea) for molecular tumbling is 13.4 kJ/mol.
Partial Deacetylation of Asterriquinone Diacetate by Aqueous Sodium Bicarbonate in Pyridine. (1995)

Asterriquinone (ARQ); 2, 5-bis[1-(1, 1-dimethyl-2-propenyl)-1H-indol-3-yl]-3, 6-dihydroxy-2, 5-cyclohexadiene-1, 4-dione and ARQ monoacetate are metabolites from mycelium of Aspergillus terreus IFO 6123. ARQ diacetate was converted into ARQ monoacetate by treatment with 5% aq. NaHCO3 in pyridine at 80°C for 5 min, and the yield was 93.4%. Similarly, by treatment with 5% aq. NaHCO3 in acetone at room temperature, 2, 5-diacetoxy-p-xyloquinone and 2, 5-diacetoxy-p-benzoquinone were converted into 2-acetoxy-5-hydroxy-p-xyloquinone (yield, 85.8%) and 2-acetoxy-5-hydroxy-p-benzoquinone (yield, 66.7%), respectively.
Accurate Detection of Low Levels of Fluorescence Emission in Autofluorescent Background: Francisella-Infected Macrophage Cells (2010)

Cellular autofluorescence, though ubiquitous when imaging cells and tissues, is often assumed to be small in comparison to the signal of interest. Uniform estimates of autofluorescence intensity obtained from separate control specimens are commonly employed to correct for autofluorescence. While these may be sufficient for high signal-to-background applications, improvements in detector and probe technologies and introduction of spectral imaging microscopes have increased the sensitivity of fluorescence imaging methods, exposing the possibility of effectively probing the low signal-to-background regime. With spectral imaging, reliable monitoring of signals near or even below the noise levels of the microscope is possible if compensation for autofluorescence and background signals can be performed accurately. We demonstrate the importance of accurate autofluorescence modeling and the utility of spectral imaging and multivariate analysis methods using a case study focusing on fluorescence confocal spectral imaging of host-pathogen interactions. In this application fluorescent proteins are produced when Francisella novicida invade host macrophage cells. The resulting analyte signal is spectrally overlapped and typically weaker than the cellular autofluorescence. In addition to discussing the advantages of spectral imaging for following pathogen invasion, we present the spectral properties and cellular origin of macrophage autofluorescence.
Gold Nanoparticles Deposited on SiO2/Si(100):  Correlation between Size, Electron Structure, and Activity in CO Oxidation (2003)

Nanosize gold particles were prepared by Ar(+) ion implantation of 10-nm thick gold film deposited onto a SiO(2)/Si(100) wafer possessing no catalytic activity in the CO oxidation. Along with size reduction the valence band of the gold particles and the actual size were determined by ultraviolet- and X-ray photoelectron spectroscopy (UPS, XPS) and by transmission electron microscopy (TEM) as well as atomic force microscopy (AFM), respectively. The catalytic activity was determined in the CO oxidation. Energy distribution of the photoelectrons excited from 5d valence band of gold was strongly affected by Ar(+) implantation. This variation was interpreted by the redistribution of the valence band density of states (DOS). The intrinsic catalytic activity of the gold particles increased with decreasing size. When an Au/FeO(x) interface was created by FeO(x) deposition on large gold nanoparticles, a significant increase in the rate of the CO oxidation was observed. These data can be regarded as an experimental verification of the correlation between the catalytic activity and valence band density of states of gold.
Activation of Aldose Reductase in Rat Lens and Metal-Ion Chelation by Aldose Reductase Inhibitors and Lipoic Acid (1996)

Sorbitol formation in rat lenses incubated with high levels of glucose was related to activation of aldose reductase (AR). The hyperglycaemia-activated aldose reductase was inhibited by alpha-lipoic (thioctic) acid, O-phenanthroline and aldose reductase inhibitors (ARIs) including Zeopolastat (ZPLS), Sorbinil (SBN) and AL-1576. This study also examined ARIs for the ability to chelate metal ions. We found that ARIs suppress copper-dependent ascorbate oxidation, lipid peroxidation and hydrogen peroxide production in erythrocytes. ARIs also increased partition of copper ions into noctanol, which indicates formation of lipophilic complexes. Our data support the hypothesis that transition metals may be involved in activation of the polyol (aldose reductase) pathway. Also, ARIs function as metal-chelating antioxidants that may contribute to their therapeutic role for diabetic complications.
Microcirculation and oxidative stress (2007)

The microcirculation is a complex and integrated system, transporting oxygen and nutrients to the cells. The key component of this system is the endothelium, contributing to the local balance between pro and anti-inflammatory mediators, hemostatic balance, as well as vascular permeability and cell proliferation. A constant shear stress maintains vascular endothelium homeostasis while perturbed shear stress leads to changes in secretion of vasodilator and vasoconstrictor agents. Increased oxidative stress is a major pathogenetic mechanism of endothelial dysfunction by decreasing NO bioavailability, promoting inflammation and participating in activation of intracellular signals cascade, so influencing ion channels activation, signal transduction pathways, cytoskeleton remodelling, intercellular communication and ultimately gene expression. Targeting the microvascular inflammation and oxidative stress is a fascinating approach for novel therapies in order to decrease morbidity and mortality of chronic and acute diseases.
Structure of the FKBP12-Rapamycin Complex Interacting with Binding Domain of Human FRAP (1996)

Rapamycin, a potent immunosuppressive agent, binds two proteins: the FK506-binding protein (FKBP12) and the FKBP-rapamycin-associated protein (FRAP). A crystal structure of the ternary complex of human FKBP12, rapamycin, and the FKBP12-rapamycin-binding (FRB) domain of human FRAP at a resolution of 2.7 angstroms revealed the two proteins bound together as a result of the ability of rapamycin to occupy two different hydrophobic binding pockets simultaneously. The structure shows extensive interactions between rapamycin and both proteins, but fewer interactions between the proteins. The structure of the FRB domain of FRAP clarifies both rapamycin-independent and -dependent effects observed for mutants of FRAP and its homologs in the family of proteins related to the ataxia-telangiectasia mutant gene product, and it illustrates how a small cell-permeable molecule can mediate protein dimerization.
IRON AND MANGANESE IN ANAEROBIC RESPIRATION: Environmental Significance, Physiology, and Regulation (1994)

Dissimilatory iron and/or manganese reduction is known to occur in several organisms, including anaerobic sulfur-reducing organisms such as Geobacter metallireducens or Desulfuromonas acetoxidans, and facultative aerobes such as Shewanella putrefaciens. These bacteria couple both carbon oxidation and growth to the reduction of these metals, and inhibitor and competition experiments suggest that Mn(IV) and Fe(III) are efficient electron acceptors similar to nitrate in redox abilities and capable of out-competing electron acceptors of lower potential, such as sulfate (sulfate reduction) or CO2 (methanogenesis). Field studies of iron and/or manganese reduction suggest that organisms with such metabolic abilities play important roles in coupling the oxidation of organic carbon to metal reduction under anaerobic conditions. Because both iron and manganese oxides are solids or colloids, they tend to settle downward in aquatic environments, providing a physical mechanism for the movement of oxidizing potential into anoxic zones. The resulting biogeochemical metal cycles have a strong impact on many other elements including carbon, sulfur, phosphorous, and trace metals.
An Evaluation on Primary English Education in Taiwan: From the Perspective of Language Policy (2013)

There is a growing tendency in Asia for English as a foreign / second (EFL/ESL) programs to be implemented in the early years of primary schooling. Government policies supporting teaching primary school English are often framed in terms of globalization and the need to compete with other Asian neighbors. In the case of Taiwan, this notion increasingly has led government to support primary school English teaching curricula for all students and to parents spending large sums of money on private tutoring or out of school tuition. Arguments for this position are often based on the “earlier is better” ESL evidence, rather than on sound language policy settings and EFL research. As a consequence, problems and controversies have arisen related to inconsistencies that exist between the macro- and micro-level implementation forces. The purpose of this study is to explore these implementation issues and problems from a language planning and policy perspective through an examination of the language-in-education policy types required for the development of successful programs. This study concludes with some implications for the possible reforms of primary EFL education policy that aim to improve implementation in order to better serve the EFL learning needs of students in Taiwan.
SOS (2002)

Denial of service (DoS) attacks continue to threaten the reliability of networking systems. Previous approaches for protecting networks from DoS attacks are reactive in that they wait for an attack to be launched before taking appropriate measures to protect the network. This leaves the door open for other attacks that use more sophisticated methods to mask their traffic.We propose an architecture called Secure Overlay Services (SOS) that proactively prevents DoS attacks, geared toward supporting Emergency Services or similar types of communication. The architecture is constructed using a combination of secure overlay tunneling, routing via consistent hashing, and filtering. We reduce the probability of successful attacks by (i) performing intensive filtering near protected network edges, pushing the attack point perimeter into the core of the network, where high-speed routers can handle the volume of attack traffic, and (ii) introducing randomness and anonymity into the architecture, making it difficult for an attacker to target nodes along the path to a specific SOS-protected destination.Using simple analytical models, we evaluate the likelihood that an attacker can successfully launch a DoS attack against an SOS-protected network. Our analysis demonstrates that such an architecture reduces the likelihood of a successful attack to minuscule levels.