gebhart/patrepeval huggingface dataset:
Navigation of bone alignment osteotomies of the tibia (2005)

This article describes a new bone segment navigation device for application in orthopaedic surgery. It allows for exact and CT-free alignment of bone segments according to a preset plan. The system guides the user through the initialisation process with only minor interaction. Once the bone segments are registered, an intuitive graphical model visualizes current spatial position relative to a desired (initial or planned) position. Advantages of the system are the usability without CT data and a very simple user interface. We describe the system, its components and the method of operation. Furthermore, an initial experiment to measure the overall repositioning accuracy during an experimental intervention is described, which was performed to access biomechanical information for the clinical analysis of osseo-integration processes is presented.
A Key Role for Itk in Both IFNγ and IL-4 Production by NKT Cells (2007)

NKT cells rapidly secrete cytokines upon TCR stimulation and thus may modulate the acquired immune response. Recent studies suggest that signaling for development and effector function in NKT cells may differ from conventional T cells. The tyrosine kinase Itk is activated downstream of the TCR, and its absence in CD4(+) T cells results in impaired Th2, but not Th1 responses. In this study, we investigated NKT cell function in the absence of Itk as impaired type 2 responses in vivo could be manifest through IL-4 defects in a number of cell types. We show that Itk-deficient NKT cells up-regulate IL-4 mRNA in the thymus and express constitutive IL-4 and IFN-gamma transcripts in peripheral organs. Thus, Itk is not required for the developmental activation of cytokine loci in NKT cells. Nevertheless, Itk-deficient NKT cells are severely impaired in IL-4 protein production. Strikingly, unlike conventional CD4(+) T cells, Itk-deficient NKT cells also have profound defects in IFN-gamma production. Furthermore, both IL-4 and IFN-gamma production were markedly impaired following in vivo challenge with alpha-galactosyl ceramide. Function can be restored in Itk-deficient NKT cells by provision of calcium signals using ionomycin. These results suggest that NKT cells are highly dependent on Itk for IL-4- and IFN-gamma-mediated effector function. Thus, the pattern of cytokine genes that are affected by Itk deficiency appears to be cell lineage-specific, likely reflecting differences in activation threshold between immune effectors. The severe defect in NKT cell function may underlie a number of the Th1 and Th2 immune defects in Itk-deficient mice.
Evidence-based pharmacotherapy of eating disorders (2011)

The objective was to review scientific evidence for efficacy and safety of pharmacotherapy in adults or children with an eating disorder (ED). We conducted a computer search for all randomized controlled trials (RCTs) published between 1960 and May 2010 for treatment of anorexia nervosa (AN), bulimia nervosa (BN) or binge-eating disorder (BED). For drugs for which no RCT was found, open trials or case reports were retrieved. Clinically relevant RCTs in the treatment of AN have used atypical antipsychotics, selective serotonin reuptake inhibitors (SSRIs), and zinc supplementation. Olanzapine demonstrated an adjunctive effect for in-patient treatment of underweight AN patients, and fluoxetine helped prevent relapse in weight-restored AN patients in 1/2 studies. For treatment of BN, controlled studies have used SSRIs, other antidepressants, and mood stabilizers. In 9/11 studies, pharmacotherapy yielded a statistically significant although moderate reduction in binge/purge frequency, and some additional benefits. For BED, RCTs have been conducted using SSRIs and one serotonin norepinephrine reuptake inhibitor (SNRI), mood stabilizers, and anti-obesity medications. In 11/12 studies, there was a statistically significant albeit limited effect of medication. Meta-analyses on efficacy of pharmacotherapy for BN and BED support moderate effect sizes for medication, but generally low recovery rates. Treatment resistance is an inherent feature of AN, where treatment should focus on renourishment plus psychotherapy. For BN and BED, combined treatment with pharmacotherapy and cognitive behaviour therapy has been more effective than either alone. Data on the long-term efficacy of pharmacotherapy for EDs are scarce. Short- and long-term pharmacotherapy of EDs still remains a challenge for the clinician.
Dosage-dependent phenotypes in models of 16p11.2 lesions found in autism (2011)

Recurrent copy number variations (CNVs) of human 16p11.2 have been associated with a variety of developmental/neurocognitive syndromes. In particular, deletion of 16p11.2 is found in patients with autism, developmental delay, and obesity. Patients with deletions or duplications have a wide range of clinical features, and siblings carrying the same deletion often have diverse symptoms. To study the consequence of 16p11.2 CNVs in a systematic manner, we used chromosome engineering to generate mice harboring deletion of the chromosomal region corresponding to 16p11.2, as well as mice harboring the reciprocal duplication. These 16p11.2 CNV models have dosage-dependent changes in gene expression, viability, brain architecture, and behavior. For each phenotype, the consequence of the deletion is more severe than that of the duplication. Of particular note is that half of the 16p11.2 deletion mice die postnatally; those that survive to adulthood are healthy and fertile, but have alterations in the hypothalamus and exhibit a "behavior trap" phenotype-a specific behavior characteristic of rodents with lateral hypothalamic and nigrostriatal lesions. These findings indicate that 16p11.2 CNVs cause brain and behavioral anomalies, providing insight into human neurodevelopmental disorders.
Role of nitric oxide in systemic vasopressin-induced hypothermia (1998)

It has been reported that arginine vasopressin (AVP) plays a thermoregulatory action, but very little is known about the mechanisms involved. In the present study, we tested the hypothesis that nitric oxide (NO) plays a role in systemic AVP-induced hypothermia. Rectal temperature was measured before and after AVP, AVP blocker, or NG-nitro-L-arginine methyl ester (L-NAME; NO synthase inhibitor) injection. Control animals received saline injections of the same volume. The basal body temperature (Tb) measured in control animals was 36.53 +/- 0.08 degreesC. We observed a significant (P < 0.05) reduction in Tb to 35.44 +/- 0.19 degreesC after intravenous injection of AVP (2 micrograms/kg) and to 35.74 +/- 0. 10 degreesC after intravenous injection of L-NAME (30 mg/kg). The systemic injection of the AVP blocker [beta-mercapto-beta, beta-cyclopentamethylenepropionyl1,O-Et-Tyr2,Val4,Arg8]vasopressin (10 micrograms/kg) caused a significant increase in Tb to 37.33 +/- 0.23 degreesC, indicating that AVP plays a tonic role by reducing Tb. When the treatments with AVP and L-NAME were combined, systemically injected L-NAME blunted AVP-induced hypothermia. To assess the role of central thermoregulatory mechanisms, a smaller dose of L-NAME (1 mg/kg) was injected into the third cerebral ventricle. Intracerebroventricular injection of L-NAME caused an increase in Tb, but when intracerebroventricular L-NAME was combined with systemic AVP injection (2 micrograms/kg), no change in Tb was observed. The data indicate that central NO plays a major role mediating systemic AVP-induced hypothermia.
Rhodium-Catalyzed Hydroformylation in Supercritical Carbon Dioxide (1998)

Supercritical carbon dioxide (scCO2) is an environmentally benign reaction medium for highly efficient rhodium-catalyzed hydroformylation reactions. Olefinic substrates can be hydroformylated in scCO2 at 40−65 °C to give the corresponding aldehydes in practically quantitative yields. The reaction course of the hydroformylation of 1-octene in scCO2 was analyzed in detail by online-GC monitoring. The influence of reaction parameters such as temperature, synthesis gas pressure, and [P]/Rh ratio on reaction rates and selectivities is grossly similar to the effects observed in conventional solvents. Maximum turnover frequencies of 1375, 500, and 115 h-1 were determined as lower limits for the catalytic activities under the present conditions for the unmodfied, phosphine-modified, and phosphite-modified systems, respectively. With unmodified catalysts, the hydroformylation rates are considerably higher in scCO2 than in organic solvents or liquid CO2 under otherwise identical conditions. Modified catalytic systems formed with perfluoralkyl-substituted triarylphosphine and triaralyphosphite ligands lead to higher regioselectivities than those found in conventional solvents. A constant overall n/iso ratio of 5−6 was achieved with "CO2-philic" triarylphosphines, whereas it increased in an apparent linear fashion during the reaction from approximately 6 to over 9 with the phosphite ligand. Olefin isomerization, which is a typical side reaction for phosphite-modified systems in conventional solvents, was effectively suppressed in scCO2.
Delineation of the minimal region of loss at 13q14 in multiple myeloma (2002)

Previous studies have focused on the incidence and prognostic implications of 13q14 deletions in multiple myeloma (MM), but none has sought to delineate the minimal common deleted region (CDR). In an effort to do so, dual-color interphase fluorescence in situ hybridization (FISH) was applied on 82 myeloma cases, initially by use of three probes for 13q14 (RB1, D13S319, and D13S25). Deletions were detected in 29/82 (35.4%) cases, and all except one were monoallelic. Subsequently, contiguous YACs, PACs, and a BAC spanning the 13q14-q21 region were employed for deletion mapping in addition to a 13q telomere probe. Large deletions extending to the 13q34 region were found in 55% of the deleted cases, whereas an additional 13.8% showed loss of both 13q34 and 13q14 regions with retention of 13q21. A CDR of approximately 350 kb was identified at 13q14 with the proximal border approximately 120 kb centromeric from D13S319, encompassing an area rich in expressed sequence tagged sites and containing DLEU1, DLEU2, and RFP2 genes. Direct sequencing of the RFP2 gene revealed no mutations in six patients and four MM cell lines harboring deletions of the CDR. However, a role for RFP2 in the pathogenesis of MM cannot yet be excluded, given that alternative mechanisms such as haploinsufficiency remain possible.
The role of leukopenia in the 6-mercaptopurine-induced remission of refractory Crohn's disease. (1994)

1) Increasing the dose of 6-MP in patients with refractory Crohn's disease who have not yet responded and who have not achieved leukopenia will very likely increase the efficacy of this drug. 2) Influenced by the results of this study, we have launched a double-blind prospective study to evaluate the relationship between the induction of leukopenia with 6-MP and the achievement of remission.
Self-consistent current-voltage characteristics of superconducting nanostructures (1995)

By solving the Bogoliubov--de Gennes equation self-consistently in the presence of a nonequilibrium quasiparticle distribution, we compute the current-voltage characteristic of a phase-coherent superconducting island with a tunnel barrier at one end. The results show significant structure, arising from the competition between scattering processes at the boundaries of the island and modification of the order parameter by quasiparticles and superflow. This structure is not present in non-self-consistent descriptions of normal-superconducting nanostructures.
Two-Photon-Induced Blue Shift of Core and Shell Optical Transitions in Colloidal CdSe/CdS Quasi-Type II Quantum Rods (2013)

The spectral dependence of the two-photon absorption in CdSe/CdS core/shell nanocrystal heterorods has been studied via two-photon-induced luminescence excitation spectroscopy. We verified that the two-photon absorption in these samples is a purely nonlinear phenomenon, excluding the contribution from multistep linear absorption mediated by defect states. A large absorption cross section was observed for CdSe/CdS core/shell quantum rods, in the range of 10(5) GM (1 GM = 10(-50) cm(4) s phot(-1)), scaling with the total nanocrystal volume and thus independent of the core emission wavelength. In the two-photon luminescence excitation spectra, peaks are strongly blue-shifted with respect to the one-photon absorption peaks, for both core and shell transitions. The experimental results are confirmed by k·p calculations, which attribute the shift to both different parity selection rules that apply to one-photon and two-photon transitions and a low oscillator strength for two-photon transitions close to the ground-state one-photon absorption. In contrast with lead chalcogenide quantum dots, we found no evidence of a breakdown of the optical selection rules, despite the presence of band anisotropy, via the anisotropic hole masses, and the explicitly induced reduction of the electron wave function symmetry via the rod shape of the shell. The anisotropy does lead to an unexpected splitting of the electron P-states in the case of a large CdSe core encapsulated in a thin CdS shell. Hence, tuning of the core and shell dimensions and the concurrent transition from type I to quasi-type II carrier localization enables unprecedented control over the band-edge two-photon absorption.
A spatial heterodyne spectrometer for diffuse H-α spectroscopy (2008)

The University of Wisconsin Astronomy Department and the Space Astronomy Lab at UW are designing an SHS spectrometer for the WIYN 3.5-meter telescope on Kitt Peak and the SALT 10-meter telescope in South Africa. The new device will be mated to the Sparsepak, (Bershady et al, 2004, 2005) and/or the Hydra fiber array at WIYN, and fed by either the prime focus image at SALT or the High Resolution Spectrograph fiber-feed at SALT. The spectrograph will produce spectra at a reciprocal dispersion, R = 25,000 in 20 orders, each order covering an average wavelength band 250 km/s wide, for a total wavelength range of 5000 km/s. Spectra from approximately 82 fibers will be resolved. Once the system is proven at WIYN, and because the aperture size for this spectrometer does not scale with telescope size, we will be able to test this same prototype at the SALT 10-meter telescope. This will be the first application of this technique to large aperture astronomical observations.
Fitness Costs of Mutations Affecting the Systemic Acquired Resistance Pathway in Arabidopsis thaliana (2004)

This study investigated the fitness effects of four mutations (npr1, cpr1, cpr5, and cpr6) and two transgenic genotypes (NPR1-L and NPR1-H) affecting different points of the systemic acquired resistance (SAR) signaling pathway associated with pathogen defense in Arabidopsis thaliana. The npr1 mutation, which resulted in a failure to express SAR, had no effect on fitness under growth chamber conditions, but decreased fitness in the field. The expression of NPR1 positively correlated with the fitness in the field. Constitutive activation of SAR by cpr1, cpr5, and cpr6 generally decreased fitness in the field and under two nutrient levels in two growth chamber conditions. At low-nutrient levels, fitness differences between wild type and the constitutive mutants were unchanged or reduced (especially in cpr5). The reduced fitness of the constitutive mutants suggests that this pathway is costly, with the precise fitness consequences highly dependent on the environmental context.
Processing Definition Questions in an Open-Domain Question Answering System (2002)

This paper presents a hybrid method for finding answers to Definition questions within large text collections. Because candidate answers to Definition questions do not generally fall in clearly defined semantic categories, answer discovery is guided by a combination of pattern matching and WordNet-based question expansion. The method is incorporated in a large opendomain question answering system and validated by extracting answers to 188 questions from a standard 3-Gigabyte text collection and from Web documents. Background The continuous growth and diversification of online text information represents a constant challenge, simultaneously affecting both the designers and the users of information processing systems. Information covering almost any conceivable topic becomes available every day, from a variety of sources including live news-wire services like Reuters and Associated Press, or online encyclopedia like Britannica Online. Assisting the users in finding relevant answers from large text collections is a challenging task, whether the users are interested in the estimated expenses associated with the best MBA programs in California, or the distance between the Earth
SeqGAN: Sequence Generative Adversarial Nets with Policy Gradient (2017)

As a new way of training generative models, Generative Adversarial Net (GAN) that uses a discriminative model to guide the training of the generative model has enjoyed considerable success in generating real-valued data. However, it has limitations when the goal is for generating sequences of discrete tokens. A major reason lies in that the discrete outputs from the generative model make it difficult to pass the gradient update from the discriminative model to the generative model. Also, the discriminative model can only assess a complete sequence, while for a partially generated sequence, it is non-trivial to balance its current score and the future one once the entire sequence has been generated. In this paper, we propose a sequence generation framework, called SeqGAN, to solve the problems. Modeling the data generator as a stochastic policy in reinforcement learning (RL), SeqGAN bypasses the generator differentiation problem by directly performing gradient policy update. The RL reward signal comes from the GAN discriminator judged on a complete sequence, and is passed back to the intermediate state-action steps using Monte Carlo search. Extensive experiments on synthetic data and real-world tasks demonstrate significant improvements over strong baselines.
Effects of Fat Supplementation and Immature Alfalfa to Concentrate Ratio on Plasma Progesterone, Energy Balance, and Reproductive Traits of Dairy Cattle (1990)

Forty-six multiparous Holstein cows were assigned at 5 d postpartum to a completely randomized design employing a 2 x 3 factorial arrangement of treatments. Factors were 0 and 5% added prilled long-chain fatty acids (DM basis) and three forage to concentrate ratios (45:55, 64:36, 84:16). Diets consisted of immature alfalfa silage and a concentrate of shelled corn and soybean meal with or without fat replacing a portion of the corn. Mean plasma concentration of cholesterol was higher for cows fed 5% vs. 0% fat and increased over the first 100 d in milk for all animals regardless of treatment. There were no differences in reproductive performance due to either of the main effects. Mean plasma progesterone was higher due to fat treatment in the mid to late luteal phase of the second postpartum cycle as well as the metestrous to early luteal phase and mid to late luteal phase of the third cycle. Even though progesterone concentrations were higher in cows fed 5% fat during the luteal phase after breeding, the conception rates at this service were not different from those fed 0% fat. The biological significance of increased plasma progesterone concentration was not identified with any postpartum reproductive trait measured in this trial.
Chemistry of fluorine in the oxidation of silicon (1991)

The chemical environment of fluorine in the oxide layer of metal-oxide-semiconductor (MOS) structures has been examined by surface analytical spectroscopies. HF treatment of Si(100) results in subsurface SiF formation. Upon oxidation, oxyfluoride moieties are formed with a significant accumulation of fluorine throughout the oxide layer. These changes are correlated to the electrical integrity of MOS interfaces by performing Fowler–Nordheim electron injection studies.
VLSI architecture for datapath integration of arithmetic over GF(2/sup m/) on digital signal processors (2002)

This paper examines the implementation of finite field arithmetic, i.e. multiplication, division, and exponentiation, for any standard basis GF(2/sup m/) with m/spl les/8 on a DSP datapath. We introduce an opportunity to exploit cells and the interconnection structure of a typical binary multiplier unit for the Finite Field operations by adding just a small overhead of logic. We develop division and exponentiation based on multiplication on the algorithm level and present a simple scheme for implementation of all operations on a processor datapath.
Modulation of the age‐related nuclear factor‐κB (NF‐κB) pathway by hesperetin (2006)

Nuclear factor-kappaB (NF-kappaB), a redox-sensitive transcription factor, plays an important role in the aging process. Thus, developing and identifying specific components that modulate NF-kappaB without adverse side-effects would be of major importance. Hesperetin, a flavanone abundant in citrus fruits, has a variety of pharmacological properties being antioxidant, cholesterol-lowering, and anti-inflammatory. In this study, we investigated how hesperetin fed to 6- and 24-month-old rats modulates NF-kappaB in their kidneys. Results showed that hesperetin suppressed NF-kappaB activation and related gene expressions. An even more interesting finding is that hesperetin suppressed NF-kappaB through four signal transduction pathways, NIK/IKK, ERK, p38, and JNK. Further evidence showed the remarkable efficacy of hesperetin to suppress the translocation of Trx/Ref-1, indicating its beneficial effect on the redox status. The most significant findings of the current study report new information on the use of hesperetin as a potential anti-aging agent.
Synthesis and stability of small molecule probes for Pseudomonas aeruginosa quorum sensing modulation (2004)

The human pathogen Pseudomonas aeruginosa uses N-butyryl-L-homoserine lactone (BHL) and N-(3-oxododecanyl)-L-homoserine lactone (OdDHL) as small molecule intercellular signals in a phenomenon known as quorum sensing (QS). QS modulators are effective at attenuating P. aeruginosa virulence; therefore, they are a potential new class of antibacterial agent. The lactone in BHL and OdDHL is hydrolysed under physiological conditions. The hydrolysis proceeds at a rate faster than racemisation of the alpha-chiral centre. Non-hydrolysable, non-racemic analogues (small molecule probes) were designed and synthesised, replacing the lactone with a ketone. OdDHL analogues were found to be relatively unstable to decomposition unless they were difluorinated between the beta-keto amide. Stability studies on a non-hydrolysable, cyclohexanone analogue indicated that racemisation of the alpha-chiral centre was relatively slow. This analogue was assayed to show that the L-isomer is likely to be responsible for the QS autoinducing activity in P. aeruginosa and Serratia strain ATCC39006.