gebhart/patrepeval huggingface dataset:
Oxidative Desulfurization of Light Gas Oil and Vacuum Gas Oil by Oxidation and Solvent Extraction (2000)

The oxidation of model sulfur compounds (thiophene derivatives, benzothiophene derivatives, and dibenzothiophene derivatives), straight run-light gas oil (SR-LGO, S: 1.35 wt %), and vacuum gas oil (VGO, S: 2.17 wt %) were conducted with a mixture of hydrogen peroxide and formic acid. The thiophene derivatives with 5.696 to 5.716 electron densities on the sulfur atoms could not be oxidized at 50 °C. Benzo[b]thiophene with 5.739 electron density and other benzothiophene and dibenzothiophenes with higher electron densities could be oxidized. The sulfur compounds in SR-LGO and VGO appeared to be oxidized to a detectable levels (c.a., 0.01 wt % S) by GC-FPD analysis. The IR spectra of oxidized SR-LGO and VGO showed that sulfones were formed by oxidation. The removal of sulfur compounds by extraction became more effective for the oxidized samples than for the original samples. Lighter sulfur compounds were preferentially extracted. The extraction efficiencies of solvents, i.e., N,N‘-dimethylformamide (DMF), acetonitrile (ACN), methanol, varied greatly. The most effective solvent for the removal of sulfur compounds was DMF. The recovery of oil was, however, lowest with DMF.
Chain-length dependence of the third-order polarizability of disubstituted polyenes: effects of end groups and conjugation length (1993)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTChain-length dependence of the third-order polarizability of disubstituted polyenes: effects of end groups and conjugation lengthGermain Puccetti, Mireille Blanchard-Desce, Isabelle Ledoux, Jean Marie Lehn, and Joseph ZyssCite this: J. Phys. Chem. 1993, 97, 37, 9385–9391Publication Date (Print):September 1, 1993Publication History Published online1 May 2002Published inissue 1 September 1993https://pubs.acs.org/doi/10.1021/j100139a022https://doi.org/10.1021/j100139a022research-articleACS PublicationsRequest reuse permissionsArticle Views314Altmetric-Citations78LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access options Get e-Alerts
A High Quantum Yield Diarylethene-Backbone Photochromic Polymer (1999)

Photochromism that arises from the main polymer backbone is reported for the first time. The synthesized polymer with the diarylethene repeat unit is demonstrated to have photochromic properties superior to those of the monomer. The polymer has high thermal stability and its cyclization quantum yield (0.85) is very high for a photochromic compound. The closed, conjugated form of the polymer, which can be changed into the open, non-conjugated form by irradiation with visible light, is oxidizable, thus opening the way to photoswitchable electronic applications.
Cloning and analysis of PCR-generated DNA fragments. (1994)

Methods are presented for the improved yield and analysis of blunt-ended cloning of PCR-generated DNA fragments. We show that Pfu DNA polymerase polishing of Taq DNA polymerase-generated fragments increases the yield and efficiency of cloning. Using a triple primer set consisting of two outside, asymmetrically distanced primers and one fragment-specific primer, both the presence and orientation of cloned inserts can be determined. Application of these methods allows the generation and cloning of a fragment in 1 day and the analysis of putative clones the next, thereby saving a substantial amount of both time and effort.
Flux Conversion and Evidence of Relaxation in a High-βPlasma Formed by High-Speed Injection into a Mirror Confinement Structure (2004)

High-beta plasmoids can survive the violent dynamics of supersonic reflection off mirror structures, producing a stable high-beta field-reversed configuration (FRC). This shows both the robustness of FRCs and their tendency to assume a preferred plasma state, possibly conforming to a relaxation principle. The key observations are (1) approximate preservation of the magnetic helicity, (2) substantial conversion from toroidal to poloidal magnetic flux, (3) substantial toroidal flow, and (4) a high-beta quiescent final state. These results are from the Translation, Confinement, and Sustainment experiment where a disorganized plasmoid is injected at super-Alfvenic speed into a confinement chamber. After successive reflections from end mirrors, the plasmoid settled into a near-FRC state with high beta and low toroidal magnetic field. The flux conversion and helicity preservation are inferred by an interpretive model.
Molecular Genetics of Human Visual Pigments (1992)

Orthologs and paralogs are two fundamentally different types of homologous genes that evolved, respectively, by vertical descent from a single ancestral gene and by duplication. Orthology and paralogy are key concepts of evolutionary genomics. A ...Read More
Axial distributions of metastable atoms and charged particles in an ultrahigh frequency argon plasma column at moderate pressures (1996)

The axial distributions of electrons, atomic and molecular ions as well as metastable atoms in an argon ultrahigh frequency (UHF) discharge at a moderate pressure sustained by a traveling electromagnetic wave have been theoretically obtained. The dependence between the absorbed wave power and the electron density necessary for plasma modeling has been numerically derived by taking into account both direct and step-wise ionization processes. The inclusion of step-wise ionization process leads to a lower electron temperature comparing to that calculated under the assumption that only the direct ionization takes place. The results have been compared with the experimental data for an UHF argon plasma at 1.8 Torr. A better agreement is achieved when the ionization by metastable–metastable collisions is taken into account together with the step-wise ionization.
JNK, cytoskeletal regulator and stress response kinase? A Drosophila perspective (1999)

c-Jun N-terminal kinases (JNKs) are intracellular stress-activated signalling molecules, which are controlled by a highly evolutionarily conserved signalling cascade. In mammalian cells, JNKs are regulated by a wide variety of cellular stresses and growth factors and have been implicated in the regulation of remarkably diverse biological processes, such as cell shape changes, immune responses and apoptosis. How can such different stimuli activate the JNK pathway and what roles does JNK play in vivo? Molecular genetic analysis of the Drosophila JNK gene has started to provide answers to these questions, confirming the role of this molecule in development and stress responses and suggesting a conserved function for JNK signalling in processes such as wound healing. Here, we review this work and discuss how future experiments in Drosophila should reveal the cell type-specific mechanisms by which JNKs perform their diverse functions.
Finite element modelling of magnetic stimulation of the spine (2002)

A finite element method has been used to calculate the induced current flow in the spinal cord, when exposed to a time varying magnetic field. Results from the model explain why it is not possible to stimulate the descending motor tracts of the spinal cord with existing equipment. The specifications of a typical commercially available magnetic stimulator and the range of stimulating coils available are used to assess the feasibility of spinal cord stimulation.
Analysis of the local and systemic immune responses induced in BALB/c mice by experimental respiratory syncytial virus infection (1990)

Pulmonary A2 strain respiratory syncytial virus infection of BALB/c laboratory mice persisted for up to 7 days after initial infection with peak virus titres being recovered on day 4. Virus antigen within the lungs was found to be restricted essentially to the alveolar regions. Similarly, pulmonary histopathological changes remained confined to the peri-alveolar regions being consistent with mild pneumonia. Infection was found to elicit a pulmonary major histocompatibility complex-restricted cytotoxic T lymphocyte (CTL) response which was first detectable 6 days after infection and optimal 7 to 9 days after infection. This local CTL response was preceded by a rapid transient virus-specific lymphocyte transformation response which was detectable only 3 days after intranasal infection. In addition, infection induced rapid interferon production within the lungs which was accompanied by an equally rapid rise in pulmonary natural killer (NK) cell cytotoxic activity. Enhanced NK cell cytotoxicity could be detected after only 1 day post-infection and continued to rise to maximum levels on day 3. This response like the acute CTL response was found to be restricted to the lower respiratory tract. IgG was the first class of virus-specific immunoglobulin to be detected in the lungs of infected animals after experimental infection. However, IgG was not detected until day 10 post-infection, 5 days after the initial decline of virus shedding. Virus-specific IgA although detectable did not appear in the lung until day 24.
Detection of single DNA base differences by competitive oligonucleotide priming (1989)

Synthetic DNA oligonucleotides can serve as efficient primers for DNA synthesis even when there is a single base mismatch between the primers and the corresponding DNA template. However, when the primer-template annealing is carried out with a mixture of primers and at low stringency the binding of a perfectly matched primer is strongly favored relative to a primer differing by a single base. This primer competition is observed over a range of oligonucleotide sizes from twelve to sixteen bases and with a variety of base mismatches. When coupled with the polymerase chain reaction, for the amplification of specific DNA sequences, competitive oligonucleotide priming provides a simple general strategy for the detection of single DNA base differences.
Delactosed, High Milk Protein Powder. 1. Manufacture and Composition (1991)

The objective of this research was to develop a new method for the production of delactosed, high milk protein powder without pH adjustment. Skim milk containing approximately 3.2% protein and 4.91% lactose was ultrafiltered at 38'C to approximately 15% protein and 3.8% lactose. The ultrafiltered milk was batch diafiltered three times at 32'C with water to approximately 18.9% protein and .OS% lactose and then spray dried. Inlet and outlet air temperatures during drying were 120 to 125'C and 75 to S O T , respectively. The average composition of the dried product was 5.3% moisture, 83.9% protein, 2.27% fat, .73% lactose, and 7.05% ash. Sodium dodecyl sulfatepolyacrylamide gel electrophoresis analysis of the powders showed that protein composition was similar to that of skim milk. This powder may have potential in the manufacture of new products or in the improvement of existing products such as low fat yogurts.
Mechanism of Action of the Female Sex Hormones (1972)

The Hippo pathway was initially discovered in Drosophila melanogaster as a key regulator of tissue growth. It is an evolutionarily conserved signaling cascade regulating numerous biological processes, including cell growth and fate decision, organ size ...Read More
Simultaneous Transmission of Speech and Data Using Code-Breaking Techniques (1981)

A system whereby speech is used as a data carrier is proposed. The speech, sampled at 8 kHz, is divided into blocks of N samples, and provided the correlation coefficient and mean square value of the samples exceed system thresholds, data is allowed to be transmitted. If the data is a logical 0, the samples are sent without modification; however, if a logical 1 is present, frequency inversion scrambling of the samples occurs. The receiver performs the inverse process to recover both the speech and data. Data rates of 700 b/s were achieved without data errors or speech distortion via an ideal channel. The effects of additive background and channel noise were investigated, and the system was shown to operate at 126 b/s with no data errors when the additive noise was as high as 10 dB below the mean square value of the speech signal.
Isolation of T-Lymphotropic Retrovirus Related to HTLV-III/LAV from Wild-Caught African Green Monkeys (1985)

Present evidence suggests that the acquired immune deficiency syndrome (AIDS) emerged in Central Africa as a new disease in recent decades. This disease has recently approached epidemic proportions in many parts of the world. The etiologic agent of AIDS is believed to be the virus HTLV-III/LAV, which has been proposed as having originated from a recent simian-human transmission in Africa. This report describes the isolation of a designated STLV-IIIAGM retrovirus closely related to HTLV-III/LAV from seven healthy wild-caught African Green monkeys (Cercopithecus aethiops) that showed the presence of antibodies designated STLV-IIIAGM. In vitro growth characteristics, ultrastructural morphology, and major proteins of 160,000 kilodaltons (kD), 120 kD, 55 kD, and 24 kD are similar to and cross-reactive with the analogous antigens of HTLV-III/LAV. The use of these serologic markers in the detection of STLV-IIIAGM-infected monkeys may be important in assuring the continued safety of a variety of biologic reagents that are derived from these primate species. The existence of a retrovirus closely related to HTLV-III/LAV that naturally infects an African nonhuman primate in the apparent absence of disease may provide a unique model for the study of human AIDS and the development of an effective vaccine.
The peripheral-type benzodiazepine receptor is functionally linked to Leydig cell steroidogenesis. (1990)

Testicular mitochondria were previously shown to contain an abundance of peripheral-type benzodiazepine recognition site(s)/receptor(s) (PBR). We have previously purified, cloned, and expressed an Mr 18,000 PBR protein (Antkiewicz-Michaluk, Mukhin, A. G., Guidotti, A., and Krueger, K. E. (1988) J. Biol. Chem. 263, 17317-17321; (Sprengel, R., Werner, P., Seeburg, P. H., Mukhin, A. G., Santi, M. R., Grayson, D. R., Guidotti, A., and Krueger, K. E. (1989) J. Biol. Chem. 264, 20415-20421); and in this report, we present evidence that PBR are functionally linked to Leydig cell steroid biosynthesis. A spectrum of nine different ligands covering a range of over 4 orders of magnitude in their affinities for PBR were tested for their potencies to modulate steroidogenesis in the MA-10 mouse Leydig tumor cell line. The Ki for inhibition of [3H]1-(2-chlorophenyl)-N-methyl-N-(1-methylpropyl)-3-isoquinoline carboxamide binding and the EC50 for steroid biosynthesis for this series of compounds showed a correlation coefficient of r = 0.95. The most potent ligands stimulated steroid production by approximately 4-fold in these cells. This stimulation was not inhibited by cycloheximide, unlike human chorionic gonadotropin- or cyclic AMP-activated steroidogenesis. The action of PBR ligands was not additive to stimulation by human chorionic gonadotropin or cyclic AMP, but was additive to that of epidermal growth factor, another regulator of MA-10 Leydig cell steroidogenesis. Moreover, PBR ligands stimulated, in a dose-dependent manner, pregnenolone biosynthesis by isolated mitochondria when supplied with exogenous cholesterol. This effect was not observed with mitoplasts (mitochondria devoid of the outer membrane). Cytochrome P-450 side chain cleavage activity, as measured by metabolism of (22R)-hydroxycholesterol, was not affected by PBR ligands in intact cells. Similar results were also obtained with purified rat Leydig cells. In conclusion, PBR are implicated in the acute stimulation of Leydig cell steroidogenesis possibly by mediating the entry, distribution, and/or availability of cholesterol within mitochondria.
A superhigh-frequency optoelectromechanical system based on a slotted photonic crystal cavity (2012)

We develop an all-integrated optoelectromechanical system that operates in the superhigh frequency band. This system is based on an ultrahigh-Q slotted photonic crystal (PhC) nanocavity formed by two PhC membranes, one of which is patterned with electrode and capacitively driven. The strong simultaneous electromechanical and optomechanical interactions yield efficient electrical excitation and sensitive optical transduction of the bulk acoustic modes of the PhC membrane. These modes are identified up to a frequency of 4.20 GHz, with their mechanical Q factors ranging from 240 to 1730. Directly linking signals in microwave and optical domains, such optoelectromechanical systems will find applications in microwave photonics in addition to those that utilize the electromechanical and optomechanical interactions separately.
An Integrative Genomic and Proteomic Analysis of PIK3CA, PTEN, and AKT Mutations in Breast Cancer (2008)

Phosphatidylinositol 3-kinase (PI3K)/AKT pathway aberrations are common in cancer. By applying mass spectroscopy-based sequencing and reverse-phase protein arrays to 547 human breast cancers and 41 cell lines, we determined the subtype specificity and signaling effects of PIK3CA, AKT, and PTEN mutations and the effects of PIK3CA mutations on responsiveness to PI3K inhibition in vitro and on outcome after adjuvant tamoxifen. PIK3CA mutations were more common in hormone receptor-positive (34.5%) and HER2-positive (22.7%) than in basal-like tumors (8.3%). AKT1 (1.4%) and PTEN (2.3%) mutations were restricted to hormone receptor-positive cancers. Unlike AKT1 mutations that were absent from cell lines, PIK3CA (39%) and PTEN (20%) mutations were more common in cell lines than tumors, suggesting a selection for these but not AKT1 mutations during adaptation to culture. PIK3CA mutations did not have a significant effect on outcome after adjuvant tamoxifen therapy in 157 hormone receptor-positive breast cancer patients. PIK3CA mutations, in comparison with PTEN loss and AKT1 mutations, were associated with significantly less and inconsistent activation of AKT and of downstream PI3K/AKT signaling in tumors and cell lines. PTEN loss and PIK3CA mutation were frequently concordant, suggesting different contributions to pathophysiology. PTEN loss rendered cells significantly more sensitive to growth inhibition by the PI3K inhibitor LY294002 than did PIK3CA mutations. Thus, PI3K pathway aberrations likely play a distinct role in the pathogenesis of different breast cancer subtypes. The specific aberration present may have implications for the selection of PI3K-targeted therapies in hormone receptor-positive breast cancer.
A novel asparaginase‐like protein is a sperm autoantigen in rats (2002)

A novel asparaginase-like protein (ALP) of spermatozoa was cloned from rat and human testis cDNA libraries on the basis of reactivity with antibodies produced after vasectomy. Although obstruction of the male reproductive tract is known to cause an immunologic response, few of the sperm antigens responsible for the generation of autoantibodies have been characterized. We are identifying proteins of interest by coring autoantigenic protein spots from two-dimensional (2-D) gels of rat sperm extracts and microsequencing them by mass spectrometry. The peptide sequences from ALP, a 28 kDa, pI 5.7 protein, matched to a single partial length rat EST. These peptide sequences were used to clone a cDNA encoding a novel 333 amino acid open reading frame. The new protein had a similarity to portions of L-asparaginases of plants (43%) and to glycosylasparaginases in animal cells (32%). Human ALP cDNA was subsequently cloned. It showed 77% identity to the rat ALP sequence and the gene, ASRGL1 (asparaginase-like 1), mapped to chromosome locus 11q12.3. Purified recombinant rat ALP (rALP), expressed in E. coli, was used to raise polyclonal antiserum in guinea pigs. Two observations verified that the correct protein had been cloned: 1) the anti-rALP antibody reacted with both rALP and rat sperm; and 2) post-vasectomy sera bound rALP. Anti-rALP antibody stained the midpiece of rat and human sperm coincident with staining by MitoTracker Green FM, suggesting that ALP is associated with the mitochondria. Northern analysis revealed that rat ALP message was abundantly expressed in the testis but was also present in heart, brain, liver, skeletal muscle, and kidney.
Organic reactions at high pressure. Cycloadditions with furans (1976)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTOrganic reactions at high pressure. Cycloadditions with furansWilliam G. Dauben and Herman O. KrabbenhoftCite this: J. Am. Chem. Soc. 1976, 98, 7, 1992–1993Publication Date (Print):March 1, 1976Publication History Published online1 May 2002Published inissue 1 March 1976https://pubs.acs.org/doi/10.1021/ja00423a071https://doi.org/10.1021/ja00423a071research-articleACS PublicationsRequest reuse permissionsArticle Views1229Altmetric-Citations84LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts