gebhart/patrepeval huggingface dataset:
3H-1,2-Benzodithiole-3-one 1,1-dioxide as an improved sulfurizing reagent in the solid-phase synthesis of oligodeoxyribonucleoside phosphorothioates (1990)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXT3H-1,2-Benzodithiole-3-one 1,1-dioxide as an improved sulfurizing reagent in the solid-phase synthesis of oligodeoxyribonucleoside phosphorothioatesRadhakrishnan P. Iyer, William Egan, Judith B. Regan, and Serge L. BeaucageCite this: J. Am. Chem. Soc. 1990, 112, 3, 1253–1254Publication Date (Print):January 1, 1990Publication History Published online1 May 2002Published inissue 1 January 1990https://pubs.acs.org/doi/10.1021/ja00159a059https://doi.org/10.1021/ja00159a059research-articleACS PublicationsRequest reuse permissionsArticle Views1415Altmetric-Citations281LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information Get e-Alerts
Basis of Permeability/Selectivity Tradeoff Relations in Polymeric Gas Separation Membranes (1999)

Gas separation properties of polymer membrane materials follow distinct tradeoff relations: more permeable polymers are generally less selective and vice versa. Robeson1 identified the best combinations of permeability and selectivity for important binary gas pairs (O2/N2, CO2/CH4, H2/N2, etc.) and represented these permeability/selectivity combinations empirically as αA/B = βA/B , where PA and PB are the permeability coefficients of the more permeable and less permeable gases, respectively, αA/B is selectivity (=PA/PB), and λA/B and βA/B are empirical parameters. This report provides a fundamental theory for this observation. In the theory, λA/B depends only on gas size. βA/B depends on λA/B, gas condensability, and one adjustable parameter.
Biophysical studies of T-cell receptors and their ligands (1996)

Recently developed methodologies for the production of the soluble extracellular domains of αβTCRs have allowed several biophysical characterizations. The thermodynamic and kinetic parameters associated with specific ligand interactions between the TCR and MHC—peptide complexes, as well as superantigens, are now being established. Crystallographic studies of isolated TCR fragments have yielded the structures of a Vα domain and the two extracellular domains of a β-chain. These investigations are beginning to allow a new visualization of antigen recognition and T-cell activation processes.
Parallel Synthesis and Screening of a Solid Phase Carbohydrate Library (1996)

A solid phase carbohydrate library was synthesized and screened against Bauhinia purpurea lectin. The library, which contains approximately 1300 di- and trisaccharides, was synthesized with chemical encoding on TentaGel resin so that each bead contained a single carbohydrate. Two ligands that bind more tightly to the lectin than Gal-beta-1,3-GalNAc (the known ligand) have been identified. The strategy outlined can be used to identify carbohydrate-based ligands for any receptor; however, because the derivatized beads mimic the polyvalent presentation of cell surface carbohydrates, the screen may prove especially valuable for discovering new compounds that bind to proteins participating in cell adhesion.
Higher order statistics and neural network for tremor recognition (2002)

This paper is concerned with the tremor characterization for the purpose of recognition. Three different types of tremor are considered in this paper: the parkinsonian, essential, and physiological. It has been proven that standard second-order statistical description of tremor is not sufficient to distinguish between these three types. Higher order polyspectra based on third- and fourth-order cumulants have been proposed as the additional characterization of the tremor time series. The set of 30 quantities based on the polyspectra has been proposed and investigated as the features for the recognition of tremor. The neural network of the multilayer perceptron structure has been used as a classifier. The results of numerical experiments have proven high efficiency of the proposed approach. The average error of recognition of three types of tremor did not exceed 3%.
Linkage of Faulty Major Histocompatibility Complex Class I to Autoimmune Diabetes (1991)

Pancreatic islet cells are the targets of an autoimmune response in type I diabetes. In the nonobese diabetic (NOD) mouse model of autoimmune diabetes, expression of major histocompatibility complex (MHC) class I proteins was inversely correlated with diabetes; in this mouse a mutation in the MHC class II-linked gene for the putative MHC class I peptide transporter was also present. Mice deficient in MHC class I expression because they do not produce beta 2-microglobulin also developed late onset autoimmune diabetes. In cells from humans with type I diabetes expression of MHC class I was decreased; subsets of prediabetics categorized as most likely to become hyperglycemic also had low MHC class I. T cell responses to self antigens are faulty in diabetics. In sets of genetically identical twins that are discordant for diabetes, the defect appeared to reside with the antigen presenting cell. Thus, a lack of surface MHC class I protein is associated with autoimmune diabetes; the concomitant defect in antigen presentation may impair the development of self tolerance, which could result in autoimmune disease.
Synthesis and biological activity of analogs of .beta.-chlornaltrexamine and .beta.-funaltrexamine at opioid receptors (1986)

beta-Chlornaltrexamine and beta-funaltrexamine analogues 4-7 with different length "arms" to which an electrophilic moiety is attached were synthesized in an effort to obtain affinity labels that would selectively and irreversibly block specific opioid receptor types and subtypes. One of the compounds, 4, was a potent, irreversible blocker of opioid receptors in the guinea pig ileum and mouse vas deferens preparations. The results of this study suggest that nucleophiles that are remote from the recognition locus are capable of alkylation by reactive electrophiles.
Practical time‐gated luminescence flow cytometry. II: Experimental evaluation using UV LED excitation (2007)

In the previous article [Part 1 (8)], we have modelled alternative approaches to design of practical time-gated luminescence (TGL) flow cytometry and examined the feasibility of employing a UV LED as the excitation source for the gated detection of europium dye labelled target in rapid flow stream. The continuous flow-section approach is well suited for rare-event cell counting in applications with a large number of nontarget autofluorescent particles. This article presents details of construction, operation and evaluation of a TGL flow cytometer using a UV LED excitation and a gated high-gain channel photomultiplier tube (CPMT) for detection. The compact prototype TGL flow cytometer was constructed and optimised to operate at a TGL cycle rate of 6 kHz, with each cycle consisting of 100 micros LED pulsed excitation and approximately 60 micros delay-gated detection. The performance of the TGL flow cytometer was evaluated by enumerating 5.7 microm Eu(3+) luminescence beads (having comparable intensity to europium-chelate-labeled Giardia cysts) in both autofluorescence-rich environmental water concentrates and Sulforhodamine 101 (S101) solutions (broadband red fluorescence covering the spectral band of target signals), respectively. The prototype TGL flow cytometer was able to distinguish the target beads, and a maximum signal to background ratio of 38:1 was observed. Neither the environmental water concentrates nor S101 solution contributed to the background in the TGL detection phase. The counting efficiency of the TGL flow cytometer was typically >93% of values determined using conventional counting methods.
Expression of alternatively terminated unusual human butyrylcholinesterase messenger RNA transcripts, mapping to chromosome 3q26-ter, in nervous system tumors. (1990)

To study the molecular origin of the altered regulation of butyrylcholinesterase (BuChE) in nervous system tumors, BuChE complementary DNA (cDNA) sequences from human glioblastoma and neuroblastoma cDNA libraries were compared with BuChE cDNAs from normal fetal and adult tissues. A single 2.6-kilobase BuChE cDNA sequence was found in all normal tissues, whereas an additional alternatively terminated BuChE cDNA clone was found in both tumor libraries. The tumor-specific cDNA contained a 3',0.7-kilobase nontranslatable extension, as well as several nucleotide alterations in the normal polyadenylation site. Single-base mutations in the coding region of this unusual BuChE cDNA infer two amino acid substitutions: Asp70----Gly and Ser425----Pro. The Asp70----Gly change has recently been implicated with "atypical" BuChE, which is deficient in its capacity to hydrolyze succinylcholine. The 3.6-kilobase mRNA was less abundant in RNA blot hybridization than the 2.6-kilobase mRNA, which is in agreement with the low ratios between the 3.6- and 2.6-kilobase BuChE cDNA clones in glioblastoma and neuroblastoma libraries. Furthermore, size fractionation and microinjection of glioblastoma polyadenylated RNA, followed by enzyme activity and selective inhibition measurements, demonstrated two peaks of functional BuChE mRNA, the heavier one probably reflecting the longer transcripts. Chromosomal mapping of the 0.7-kilobase 3' fragment by in situ hybridization localized it to a unique 3q26-ter position, where we recently found an inheritably amplified "silent" defective CHE gene in a family exposed to the cholinesterase inhibitor methyl parathion. Our findings confirm previous genetic linkage mapping of the functional CHE gene to the 3q26-ter position and demonstrate that extended functional mRNA transcripts encoding a BuChE form with two modified amino acids are produced from this gene in glioblastoma and neuroblastoma cells.
Assembly of Designer TAL Effectors by Golden Gate Cloning (2011)

Generation of customized DNA binding domains targeting unique sequences in complex genomes is crucial for many biotechnological applications. The recently described DNA binding domain of the transcription activator-like effectors (TALEs) from Xanthomonas consists of a series of repeats arranged in tandem, each repeat binding a nucleotide of the target sequence. We present here a strategy for engineering of TALE proteins with novel DNA binding specificities based on the 17.5 repeat-containing AvrBs3 TALE as a scaffold. For each of the 17 full repeats, four module types were generated, each with a distinct base preference. Using this set of 68 repeat modules, recognition domains for any 17 nucleotide DNA target sequence of choice can be constructed by assembling selected modules in a defined linear order. Assembly is performed in two successive one-pot cloning steps using the Golden Gate cloning method that allows seamless fusion of multiple DNA fragments. Applying this strategy, we assembled designer TALEs with new target specificities and tested their function in vivo.
Metabolic Actions of Estrogen Receptor Beta (ERβ) are Mediated by a Negative Cross-Talk with PPARγ (2008)

Estrogen receptors (ER) are important regulators of metabolic diseases such as obesity and insulin resistance (IR). While ERalpha seems to have a protective role in such diseases, the function of ERbeta is not clear. To characterize the metabolic function of ERbeta, we investigated its molecular interaction with a master regulator of insulin signaling/glucose metabolism, the PPARgamma, in vitro and in high-fat diet (HFD)-fed ERbeta -/- mice (betaERKO) mice. Our in vitro experiments showed that ERbeta inhibits ligand-mediated PPARgamma-transcriptional activity. That resulted in a blockade of PPARgamma-induced adipocytic gene expression and in decreased adipogenesis. Overexpression of nuclear coactivators such as SRC1 and TIF2 prevented the ERbeta-mediated inhibition of PPARgamma activity. Consistent with the in vitro data, we observed increased PPARgamma activity in gonadal fat from HFD-fed betaERKO mice. In consonance with enhanced PPARgamma activation, HFD-fed betaERKO mice showed increased body weight gain and fat mass in the presence of improved insulin sensitivity. To directly demonstrate the role of PPARgamma in HFD-fed betaERKO mice, PPARgamma signaling was disrupted by PPARgamma antisense oligonucleotide (ASO). Blockade of adipose PPARgamma by ASO reversed the phenotype of betaERKO mice with an impairment of insulin sensitization and glucose tolerance. Finally, binding of SRC1 and TIF2 to the PPARgamma-regulated adiponectin promoter was enhanced in gonadal fat from betaERKO mice indicating that the absence of ERbeta in adipose tissue results in exaggerated coactivator binding to a PPARgamma target promoter. Collectively, our data provide the first evidence that ERbeta-deficiency protects against diet-induced IR and glucose intolerance which involves an augmented PPARgamma signaling in adipose tissue. Moreover, our data suggest that the coactivators SRC1 and TIF2 are involved in this interaction. Impairment of insulin and glucose metabolism by ERbeta may have significant implications for our understanding of hormone receptor-dependent pathophysiology of metabolic diseases, and may be essential for the development of new ERbeta-selective agonists.
Chemical vapour deposition of transition-metal silicides by pyrolysis of silyl transition-metal carbonyl compounds (1977)

Pyrolysis of [Co(CO)4(SiH3)], [Fe(CO)4(SiH3)2], and [Mn(CO)5(SiH3)] at 773 K in a flow system affords the transition-metal silicldes CoSi, β-FeSi2 and MnSi–Mn5Si3 respectively. Static pyrolysis of [Mn(CO)5(SiH3)] gives only amorphous solid products which contain, in addition to metal and silicon, appreciable quantities of carbon, hydrogen, and oxygen.
An Implantable 64-Channel Wireless Microsystem for Single-Unit Neural Recording (2009)

This paper reports an implantable microsystem capable of recording neural activity simultaneously on 64 channels, wirelessly transmitting spike occurrences to an external interface. The microsystem also allows the user to examine the spike waveforms on any channel with 8 bit resolution. Signals are amplified by 60 dB with a programmable bandwidth from < 100 Hz to 10 kHz. The input-referred noise is 8 ¿V <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">rms</sub> . The channel scan rate for spike detection is 62.5 kS/sec using a 2 MHz clock. The system dissipates 14.4 mW at 1.8 V, weighs 275 mg, and measures 1.4 cm 1.55 cm.
Targeted deletion of Dicer in the heart leads to dilated cardiomyopathy and heart failure (2008)

Cardiovascular disease is the leading cause of human morbidity and mortality. Dilated cardiomyopathy (DCM) is the most common form of cardiomyopathy associated with heart failure. Here, we report that cardiac-specific knockout of Dicer, a gene encoding a RNase III endonuclease essential for microRNA (miRNA) processing, leads to rapidly progressive DCM, heart failure, and postnatal lethality. Dicer mutant mice show misexpression of cardiac contractile proteins and profound sarcomere disarray. Functional analyses indicate significantly reduced heart rates and decreased fractional shortening of Dicer mutant hearts. Consistent with the role of Dicer in animal hearts, Dicer expression was decreased in end-stage human DCM and failing hearts and, most importantly, a significant increase of Dicer expression was observed in those hearts after left ventricle assist devices were inserted to improve cardiac function. Together, our studies demonstrate essential roles for Dicer in cardiac contraction and indicate that miRNAs play critical roles in normal cardiac function and under pathological conditions.
Probability estimation for the Q-Coder (1988)

The Q-Coder is an important new development in binary arithmetic coding. It combines a simple but efficient arithmetic approximation for the multiply operation, a new formalism which yields optimally efficient hardware and software implementations, and a new technique for estimating symbol probabilities which matches the performance of any method known. This paper describes the probability-estimation technique. The probability changes are estimated solely from renormalizations in the coding process and require no additional counters. The estimation process can be implemented as a finite-state machine, and is simple enough to allow precise theoretical modeling of single-context coding. Approximate models have been developed for a more complex multi-rate version of the estimator and for mixed-context coding. Experimental studies verifying the modeling and showing the performance achieved for a variety of image-coding models are presented.
Molecular-Dynamics Study of Aqueous Solution of Trehalose and Maltose: Implication for the Biological Function of Trehalose (1997)

Abstract Molecular-dynamics simulation of aqueous solution of trehalose and maltose were performed to reveal any difference in the hydration ability between them, and to obtain information about how trehalose protects biological materials from water stress. Here, in order to examine the spatial distribution of water molecules around the hydroxy oxygen of sugar, a two-dimensional pair distribution function was introduced in addition to the conventional radial-distribution function. Both sugars were found to be extensively hydrogen bonded to solvent molecules. However, in a solution of maltose, defective hydrogen bonding was found at the exocyclic hydroxymethyl group of the reducing residue. Thus, maltose has a smaller value in hydration number than does trehalose. The translational diffusion of water molecules around trehalose has been found to be slightly more restrained than that around maltose. These findings are consistent with available experimental data concerning the solution properties of both sugars. On the basis of these results, the functional mechanism of tolerance is briefly discussed.
Blind separation of instantaneous mixture of sources via an independent component analysis (1996)

In this paper, we introduce a procedure for separating a multivariate distribution into nearly independent components based on minimizing a criterion defined in terms of the Kullback-Leibner distance. By replacing the unknown density with a kernel estimate, we derive useful forms of this criterion when only a sample from that distribution is available. We also compute the gradient and Hessian of our criteria for use in an iterative minimization. Setting this gradient to zero yields a set of separating functions similar to the ones considered in the source separation problem, except that here, these functions are adapted to the observed data. Finally, some simulations are given, illustrating the good performance of the method.
Wnt/β-catenin/CBP signaling maintains long-term murine embryonic stem cell pluripotency (2007)

Embryonic stem cells (ESCs) represent an important research tool and a potential resource for regenerative medicine. Generally, ESCs are cocultured with a supportive feeder cell layer of murine embryonic fibroblasts, which maintain the ESCs' capacity for self-renewal and block spontaneous differentiation. These cumbersome conditions, as well as the risk of xenobiotic contamination of human ESCs grown on murine embryonic fibroblasts, make it a priority to develop chemically defined methods that can be safely used for the expansion of ESCs. Using a high-throughput, cell-based assay, we identified the small molecule IQ-1 that allows for the Wnt/beta-catenin-driven long-term expansion of mouse ESCs and prevents spontaneous differentiation. We demonstrate that IQ-1, by targeting the PR72/130 subunit of the serine/threonine phosphatase PP2A, prevents beta-catenin from switching coactivator usage from CBP to p300. The increase in beta-catenin/CBP-mediated transcription at the expense of beta-catenin/p300-mediated transcription is critical for the maintenance of murine stem cell pluripotency.
Discovery and Structure–Activity Relationship of Novel 2,3-Dihydrobenzofuran-7-carboxamide and 2,3-Dihydrobenzofuran-3(2H)-one-7-carboxamide Derivatives as Poly(ADP-ribose)polymerase-1 Inhibitors (2014)

Novel substituted 2,3-dihydrobenzofuran-7-carboxamide (DHBF-7-carboxamide) and 2,3-dihydrobenzofuran-3(2H)-one-7-carboxamide (DHBF-3-one-7-carboxamide) derivatives were synthesized and evaluated as inhibitors of poly(ADP-ribose)polymerase-1 (PARP-1). A structure-based design strategy resulted in lead compound 3 (DHBF-7-carboxamide; IC50 = 9.45 μM). To facilitate synthetically feasible derivatives, an alternative core was designed, DHBF-3-one-7-carboxamide (36, IC50 = 16.2 μM). The electrophilic 2-position of this scaffold was accessible for extended modifications. Substituted benzylidene derivatives at the 2-position were found to be the most potent, with 3',4'-dihydroxybenzylidene 58 (IC50 = 0.531 μM) showing a 30-fold improvement in potency. Various heterocycles attached at the 4'-hydroxyl/4'-amino of the benzylidene moiety resulted in significant improvement in inhibition of PARP-1 activity (e.g., compounds 66-68, 70, 72, and 73; IC50 values from 0.718 to 0.079 μM). Compound 66 showed selective cytotoxicity in BRCA2-deficient DT40 cells. Crystal structures of three inhibitors (compounds (-)-13c, 59, and 65) bound to a multidomain PARP-1 structure were obtained, providing insights into further development of these inhibitors.
Virtualization of 802.11 interfaces for Wireless Mesh Networks (2011)

Equipping wireless devices with multiple radio interfaces enables multi-channel communication that has attracted recent interest due to its significant benefits in terms of exploiting the available radios to increase the throughput and the creation of WLAN-based Mesh Networks. The usage of multiple network interface cards (NICs) demands higher cost, large physical space and more energy consumption. Instead of that, virtualization of NICs is a promising approach that gives a wireless device equipped with a single card the ability to connect to more than one network simultaneously. In this paper, we present two methods for NIC virtualization. With the increasing need for energy-efficient networking and for supporting a continuous delivery of real-time multimedia services (e.g. VoIP, video streaming) despite mobility in order to avoid packet loss and delay resulting from handovers, enhancements and mechanisms are needed. In this paper, we have conducted some simulations to show how virtualization of 802.11 NICs enables energy-efficient Wireless Mesh Networks and soft handover.