gebhart/patrepeval huggingface dataset:
Amplification and overexpression of the cyclin D1 gene in aggressive human hepatocellular carcinoma. (1994)

We analyzed the genetic alterations of the cyclin D1 and INT-2 genes in hepatocellular carcinomas (HCCs) from 45 patients. Among these, expression of the cyclin D1 mRNA was also analyzed in 18 of them by Northern blotting. The cyclin D1 gene was amplified 3-16 fold in five HCCs (11%); among these, the INT-2 gene was also amplified 2-10 fold in four HCCs. We analyzed the mRNA of cyclin D1 in four HCCs with gene amplifications, and 6-10 fold overexpressions were detected in all of them. Because the cyclin D1 gene was amplified in patients at an advanced stage of HCC with rapid tumor growth, it appeared to be associated with the aggressive behavior of tumors. Studies on loss of heterozygosity on chromosome 13q, where the retinoblastoma (RB) gene is located, indicated that all HCCs with an amplified cyclin D1 gene retained heterozygosity on chromosome 13q. These results suggest that amplification and overexpression of the cyclin D1 gene result in the rapid growth of a subset of HCC, even though the function of the RB gene is retained.
DNA Mismatch Repair in Eukaryotes and Bacteria (2010)

DNA mismatch repair (MMR) corrects mismatched base pairs mainly caused by DNA replication errors. The fundamental mechanisms and proteins involved in the early reactions of MMR are highly conserved in almost all organisms ranging from bacteria to human. The significance of this repair system is also indicated by the fact that defects in MMR cause human hereditary nonpolyposis colon cancers as well as sporadic tumors. To date, 2 types of MMRs are known: the human type and Escherichia coli type. The basic features of the former system are expected to be universal among the vast majority of organisms including most bacteria. Here, I review the molecular mechanisms of eukaryotic and bacterial MMR, emphasizing on the similarities between them.
Calcium Phosphate Nanoparticles as a Novel Nonviral Vector for Efficient Transfection of DNA in Cancer Gene Therapy (2005)

To explore an efficient gene vector in cancer gene therapy, a novel nonviral vector calcium phosphate nanoparticle (CPNP) was developed. Transmission electromicroscopy and Zeta potential demonstrated that CPNP was 23.5-34.5 nm diameters and had +16.8 mV positive surface charges. The analysis of the CPNPDNA complex showed CPNP could transfer foreign DNA into targeted cells with high transfection efficiency, as well as its DNA-binding property and protection of DNA from degradation. Furthermore, the CPNP-DNA complex had no obvious cytotoxicity for CNE-2 cells, while the liposome-DNA complex had certain cytotoxicity. When the CPNP combined with suicide genes yCDglyTK for nasopharyngeal carcinoma (NPC) therapy in vitro, just 24.76% of cells survived when the wild-type CNE-2 cells were treated with the CPNP-yCDglyTK complex plus the prodrug, 5-FC (200 mg/mL). Otherwise, the expression of yCDglyTK was detected in implanted CNE-2 tumors by reverse transcription-polymerase chain reaction (RT-PCR) analysis when the CNE-2 tumor was treated with an intratumoral injection of the CPNPyCDglyTK complex. Our results showed that the CPNP might be a potential vector for gene therapy.
Synthesis and structure–property comparisons of hydrogenated poly(oxanorbornene‐imide)s and poly(norbornene‐imide)s prepared by ring‐opening metathesis polymerization (2012)

Various structures of poly(norbornene-imide)s and poly(oxanorbornene-imide)s were synthesized and an optimal hydrogenation method was established. The thermal, thermomechanical, mechanical, and optical properties of thus prepared polymers were investigated, together with the structural characteristics shown by wide-angle X-ray scattering patterns. Poly(oxanorbornene-imide)s exhibit local nanostructure caused by intermolecular interactions between the imide and backbone oxygen moiety, which appears to prevent a significant decrease in Tg when compared with poly(norbornene-imide)s. Overall, hydrogenated poly(oxanorbornene-imide)s, obtained with more readily prepared exo-monomer, exhibit similar physical properties when compared with the corresponding hydrogenated poly(norbornene-imide)s.
Temporal Effects of 2% Pilocarpine Ophthalmic Solution on Human Pupil Size and Accommodation (2020)

2% pilocarpine ophthalmic solution can safely simulate major ocular symptoms of OP exposure for behavioral research studies for at least 60 minutes.
Low disturbance audio for awareness and privacy in media space applications (1995)

No abstract available.
The design of a loud-speaker (1940)

This paper gives an account of an investigation of the requirements for design of a loud-speaker for use in livingrooms. The design which resulted from the investigation is described, and there is also some discussion of the criteria of quality of performance which have been adopted.Essential requirements were that the loud-speaker should be capable of standardization to a design which would be inexpensive for production in quantity; and that the quality of reproduction should be superior to that generally supplied by available commercial instruments—in fact, that the loudspeaker should be as near to perfection as is economically possible. The question of size was discussed during the investigation when some knowledge of the limitations thereby imposed on the quality of reproduction had been gained, and a compromise was struck between conflicting requirements.The investigation was carried to the point where a specification was issued to interested contractors, and tenders for the manufacture of loud-speakers were invited. Under the terms of this specification, samples were submitted by several contractors, and some of the samples submitted were satisfactory both as to performance and as to price. The development of the design, though fairly complete, does not include experience with the mass-produced article, or with methods of acceptance testing of supplies in bulk.
Cavity State Manipulation Using Photon-Number Selective Phase Gates (2015)

The large available Hilbert space and high coherence of cavity resonators make these systems an interesting resource for storing encoded quantum bits. To perform a quantum gate on this encoded information, however, complex nonlinear operations must be applied to the many levels of the oscillator simultaneously. In this work, we introduce the selective number-dependent arbitrary phase (snap) gate, which imparts a different phase to each Fock-state component using an off-resonantly coupled qubit. We show that the snap gate allows control over the quantum phases by correcting the unwanted phase evolution due to the Kerr effect. Furthermore, by combining the snap gate with oscillator displacements, we create a one-photon Fock state with high fidelity. Using just these two controls, one can construct arbitrary unitary operations, offering a scalable route to performing logical manipulations on oscillator-encoded qubits.
Identification and quantification of innate immune system mediators in human breast milk. (2005)

Breast-feeding decreases the risk of breast cancer in mothers and infection, allergy, and autoimmunity in infants. The presence of mediators of the innate immune system in human milk, including soluble defensins, cathelicidins, and toll-like receptors (TLRs), has not been researched thoroughly. The whey fractions of colostrum and transitional and mature milk (n = 40) from normal mothers (n = 18) and from mothers with autoimmune or allergic diseases (n = 22) were analyzed for defensins by competitive enzyme-linked immunosorbent assay, and expression of messenger RNA (mRNA) for defensins, TLRs, and cathelicidin-derived antimicrobial peptide (LL-37) by cells in breast milk was determined by semiquantitative reverse-transcription-polymerase chain reaction. In whey, human neutrophil-derived a-defensin 1 (HNP-1) and human beta-defensin 2 (HBD-2) were present in the highest concentrations (median, 33.0 and 31.3 microg/mL, respectively), human alpha-defensin 6 (HD-6) was present in moderate amounts (3.1 microg/mL), and HD-5 and HBD-1 were present in the lowest concentrations (2.4 and 1.7 microg/mL, respectively). There was great variability of defensin levels between subjects, but there was no relation to autoimmune or allergic diagnosis. HNP-1, HD-5, and HD-6 were present in significantly higher levels in colostrum than in mature milk. Regarding defensin mRNA expression in the breast milk cells, 95% of the samples (n = 41) were positive for HBD-1, 68% were positive for HD-5, 22% were positive for HBD-3, 15% were positive for HBD-2, 5% were positive for HBD-4, and 2% were positive for HD-6; 88% (14/16) were positive for HNP-1. Breast milk cells also expressed mRNA for TLR1, TLR2, TLR3, TLR4, TLR5, TLR6, TLR7, TLR9, CD14, and LL-37. Human breast milk contains high concentrations of multiple defensin proteins and cells in breast milk express mRNA for these defensins, multiple TLRs, and LL-37. The innate immune system in breast milk is complex and likely provides protection for maternal breast tissue and the developing digestive tract of newborns.
17 beta-Estradiol inhibits expression of human interleukin-6 promoter-reporter constructs by a receptor-dependent mechanism. (1994)

We previously reported that 17 beta-estradiol inhibits cytokine-stimulated bioassayable IL-6 and the steady-state level of IL-6 mRNA. To determine the molecular basis of this effect, the transient expression of chloramphenicol acetyltransferase (CAT) reporter plasmid driven by the human IL-6 promoter was studied here in HeLa or murine bone marrow stromal cells (MBA 13.2). 17 beta-estradiol (10(-8) M) completely suppressed stimulated CAT expression in HeLa cells cotransfected with IL-6/CAT constructs and a human estrogen receptor (hER) expression plasmid; but had no effect on reporter expression in HeLa cells not transfected with hER. 17 beta-estradiol also inhibited stimulated expression in MBA 13.2 cells (which express the estrogen receptor constitutively) without the requirement of cotransfection of the hER plasmid. The hormonal effects were indistinguishable between constructs containing a 1.2-kb fragment of the 5' flanking region of the IL-6 gene or only the proximal 225-bp fragment. However, yeast-derived recombinant hER did not bind to the 225-bp segment in DNA band shift assays, nor did the 225-bp fragment compete for binding of an estrogen response element oligonucleotide to yeast-derived estrogen receptor. These data suggest that 17 beta-estradiol inhibits the stimulated expression of the human IL-6 gene through an estrogen receptor mediated indirect effect on the transcriptional activity of the proximal 225-bp sequence of the promoter.
Substrate Specificity of the Hepatitis C Virus Serine Protease NS3 (1997)

The substrate specificity of a purified protein encompassing the hepatitis C virus NS3 serine protease domain was investigated by introducing systematic modifications, including non-natural amino acids, into substrate peptides derived from the NS4A/NS4B cleavage site. Kinetic parameters were determined in the absence and presence of a peptide mimicking the protease co-factor NS4A (Pep4A). Based on this study we draw the following conclusions: (i) the NS3 protease domain has an absolute requirement for a small residue in the P1 position of substrates, thereby confirming previous modelling predictions. (ii) Optimization of the P1 binding site occupancy primarily influences transition state binding, whereas the occupancy of distal binding sites is a determinant for both ground state and transition state binding. (iii) Optimized contacts at distal binding sites may contribute synergistically to cleavage efficiency.
Activation of NF-κB by the intracellular expression of NF-κB-inducing kinase acts as a powerful vaccine adjuvant (2006)

There is a pressing need for adjuvants that will enhance the effectiveness of genetic vaccines. This is particularly important in cancer and infectious disease such as HIV and malaria for which successful vaccines are desperately needed. Here, we describe an approach to enhance immunogenicity that involves the activation of NF-kappaB by the transgenic expression of an intracellular signaling molecule, NF-kappaB-inducing kinase (NIK). In vitro, NIK increases dendritic cell antigen presentation in allogeneic and antigen-specific T cell proliferation assays by potently activating NF-kappaB and consequently up-regulating the expression of cytokines (TNF-alpha, IL-6, IL-12, IL-15, and IL-18), chemokines [IL-8, RANTES (regulated on activation, normal T cell expressed and secreted), macrophage inflammatory protein-1alpha, monocyte chemoattractant protein-1, and monocyte chemoattractant protein-3], MHC antigen-presenting molecules (class I and II), and costimulatory molecules (CD80 and CD86). In vivo, NIK enhances immune responses against a vector-encoded antigen and shifts them toward a T helper 1 immune response with increased IgG2a levels, T cell proliferation, IFN-gamma production, and cytotoxic T lymphocyte responses more potently than complete Freund's adjuvant, a very efficacious T helper 1-inducing adjuvant. These findings define NIK, and possibly other inducers of NF-kappaB activation, as a potent adjuvant strategy that offers great potential for genetic vaccine development.
Myositis-specific autoantibodies: their clinical and pathogenic significance in disease expression (2009)

The idiopathic inflammatory myopathies (IIMs)--DM and PM--have been historically defined by broad clinical and pathological criteria. These conditions affect both adults and children with clinical features including muscle weakness, skin disease, internal organ involvement and an association with cancer in adults. Using a clinico-serological approach, DM and PM can be defined into more homogeneous subsets. Over the last few years, myositis-specific autoantibodies (MSAs) have been better characterized including autoantibodies directed against the aminoacyl tRNA-synthetase enzymes, the signal-recognition particle and the Mi-2 protein. In addition, clinically significant novel autoantibodies--anti-CADM-140, anti-SAE (small ubiquitin-like modifier activating enzyme), anti-p155/140 and anti-p140--have been described in the adult and juvenile disease spectrum. MSAs are directed against cytoplasmic or nuclear components involved in key regulatory intracellular processes including protein synthesis, translocation and gene transcription. The striking association between unique serological profiles and distinct clinical phenotypes suggests that target autoantigens may play a role in disease induction and propagation. In this review, we discuss the clinical utility and pathogenic significance of MSAs in disease expression.
Organic photoconductive materials: recent trends and developments (1993)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTOrganic photoconductive materials: recent trends and developmentsKock Yee. LawCite this: Chem. Rev. 1993, 93, 1, 449–486Publication Date (Print):January 1, 1993Publication History Published online1 May 2002Published inissue 1 January 1993https://pubs.acs.org/doi/10.1021/cr00017a020https://doi.org/10.1021/cr00017a020research-articleACS PublicationsRequest reuse permissionsArticle Views6188Altmetric-Citations1213LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Measurement of the refractive index of liquids at 1.3 and 1.5 micron using a fibre optic Fresnel ratio meter (2004)

A fibre optic technique based on the Fresnel reflection from the fibre tip is used for measurements of the refractive indices of various liquids at wavelengths of 1310 and 1551 nm. Reflection signals from liquid–fibre interface are compared with reflection signals from air–fibre interface to obtain the refractive index. Values of refractive indices for distilled water measured by this technique compare very well with known values at both wavelengths only if the fibre effective waveguide index is used. Applying the double-pulse measurement technique, it is shown that a measurement resolution of about 2.5 × 10−5 can be achieved.
Dynamic Changes in Myocardial Matrix and Relevance to Disease (2014)

The cardiac extracellular matrix (ECM) provides the architectural scaffold to support efficient contraction and relaxation of cardiomyocytes. The elegant design of the ECM facilitates optimal force transduction, electric transmission, intercellular communication, and metabolic exchange within the myocardial microenvironment. In the setting of increased wall stress, injury, or disease, the ECM can undergo a series of dynamic changes that lead to favorable chamber remodeling and functional adaptation. Over time, sustained matrix remodeling can impair diastolic and systolic function caused by excess deposition of interstitial fibrous tissue. These pathological alterations in ECM structure/function are considered central to the evolution of adverse cardiac remodeling and the development of heart failure. This review discusses the complex dynamics of the cardiac ECM in the setting of myocardial infarction, pressure overload, and volume overload. We also summarize the current status of ECM biomarkers that may have clinical value in prognosticating cardiac disease progression in patients. Finally, we discuss the most current status of drugs under evaluation for use in cardiac fibrosis.
Segmentation of an image sequence using multi-dimensional image attributes (2002)

Researchers have shown the compression advantages of coding video as a set of regions that can be defined by motion or texture models. Whether for purposes of compression efficiency, image editing, interactive multimedia authoring, or database search, it is often useful to be able to segment images or image sequences into regions corresponding to objects. We describe a segmentation scheme that takes account of multiple image characteristics, developing a multi-modal statistical model of regions based on a small amount of user-supplied training data.
Domain-independent entity extraction from web search query logs (2011)

Query logs of a Web search engine have been increasingly used as a vital source for data mining. This paper presents a study on large-scale domain-independent entity extraction from search query logs. We present a completely unsupervised method to extract entities by applying pattern-based heuristics and statistical measures. We compare against existing techniques that use Web documents as well as search logs, and show that we improve over the state of the art. We also provide an in-depth qualitative analysis outlining differences and commonalities between these methods.
Androgen treatment prevents diabetes in nonobese diabetic mice. (1992)

The nonobese diabetic (NOD) mouse strain provides a model system for human autoimmune diabetes. This disease model is extensively used not only to examine the etiology and pathogenesis of diabetes, but also as a means to evaluate therapies. In NOD mice, the disease progresses from insulitis to islet destruction and clinical diabetes in a high percentage of female mice. In this study, androgen therapy, begun after the onset of insulitis, was found to prevent islet destruction and diabetes without eliminating the islet inflammation in female NOD mice. However, diabetes can be adoptively transferred into such hormone-treated recipients. The prevention of disease onset by androgen is likely due to the hormonal alteration of the development or function of the immune cells necessary for islet destruction.
Study of Q-factor Estimation Model Based on Multi-Physical Impairments in Transparent Optical Networks (2012)

Optical networks are in the evolution of transparent architectures, the effects of the physical layer impairments are becoming more and more prominent. This paper setting out from multiple physical impairments, analyzes the effects as well as the diversity and complexity of the physical layer impairments in optical networks, investigates the issue of the current-related physical layer impairments estimation models which only consider a simple impairment, and at last, proposes a physical layer impairments estimation model considering multiple physical impairments based on the Q-factor. The results show that this model can be more accurate in estimating the state of physical layer impairments in the lightpath and make the physical layer impairments routing and wavelength assignment (PLI-RWA ) algorithm more effective to avoid the effects of the physical layer impairments in routing.
Screening for N ‐glycosylated proteins by liquid chromatography mass spectrometry (2004)

In the last few years mass spectrometry has become the method of choice for characterization of post-translationally modified proteins. Whereas most protein chemical modifications are binary in the sense that only one change can be associated with a given residue, many different oligosaccharides can be attached to a glycosylation site residue. The detailed characterization of glycoproteins in complex biological samples is extremely challenging. However, information on N-glycosylation can be gained at an intermediary level. Here we demonstrate a procedure for mapping N-glycosylation sites in complex mixtures by reducing sample complexity and enriching glycoprotein content. Glycosylated proteins are selected by an initial lectin chromatography step and digested with endoproteinase Lys-C. Glycosylated peptides are then selected from the digest mixture by a second lectin chromatography step. The glycan components are removed with N-glycosidase F and the peptides digested with trypsin before analysis by on-line reversed-phase liquid chromatography mass spectrometry. Using two different lectins, concanavalin A and wheat germ agglutinin, this procedure was applied to human serum and a total of 86 N-glycosylation sites in 77 proteins were identified.
Protection of cynomolgus monkeys against infection by human T‐cell leukemia virus type‐I by immunization with viral env gene products produced in Escherichia coli (1987)

Protection against human T-cell leukemia virus type-I (HTLV-I) infection in cynomolgus monkeys, achieved by immunizing the animals with env gene products of HTLV-I produced in Escherichia coli, was evaluated. Four monkeys that had been immunized with the env product produced antibody against HTLV-I gp68 and gp46, and their sera were found to cause strong inhibition of syncytium formation of a cat fibroblast cell line induced by HTLV-I. Immunized and non-immunized monkeys were challenged with live MT-2 cells, a high HTLV-I-producer cell line. After challenge, all the control non-immunized monkeys were infected with HTLV-I, as judged by the frequent detection of HTLV-I-antigens in cultures of their peripheral blood mononuclear cells (PBMC), whereas no antigens were recovered from PBMC of immunized monkeys. These results indicate that humoral immunity against HTLV-I-envelope protein elicited by immunization with the polypeptides synthesized in bacteria protected the monkeys against primary infection with HTLV-I.