gebhart/patrepeval huggingface dataset:
Amorphous Silicon-Coated Carbon Nanofibers Composite as Anode Material for Lithium-Ion Batteries (2012)

Silicon can be considered one of the most promising anode materials for lithium ion batteries (LIBs) as it has a low charge/discharge voltage at room temperature and exhibits the highest known theoretical lithiation capacity in combination with good safety characteristics. However, the silicon anode experiences enormous volume changes during repeated lithium insertion/extraction processes in every charge/discharge cycle. This leads to severe particle pulverization and results in a quick electrode structure failure. Moreover, the Si has to be amorphous, as crystallized Si can hardly alloy with lithium at room temperature. Amorphous Si thin films are currently manufactured by techniques such as chemical vapor deposition, that usually, are quite expensive, have complex equipment design and have slow rate of deposition. Electrodeposition of Si can offer a suitable alternative method of producing a thin film of amorphous Si by much easier and lower cost means. In this study electrodeposited amorphous silicon on carbon nanofibers (CNFs) have been investigated as the anode material for LIBs. Electrically conductive CNFs are produced by electrospinning and later heat treating of polyacrylonitrile (PAN) precursor. It is shown that the macromorphology of electrospinning-derived CNFs template provides enough space to accommodate the silicon volume expansions. By controlling electrodeposition parameters, cycle-ability of the anode material was optimized. It is envisaged that exceptional characteristics of CNFs and the electrodeposited Si will make the composite material an ideal candidate for the anode material of high-power LIBs.
Overexpression in Arabidopsis of a Plasma Membrane-targeting Glutamate Receptor from Small Radish Increases Glutamate-mediated Ca2+ Influx and Delays Fungal Infection (2006)

Ionotropic glutamate receptors (iGluRs) are ligand-gated nonselective cation channels that mediate fast excitatory neurotransmission. Although homologues of the iGluRs have been identified in higher plants, their roles are largely unknown. In this work we isolated a full-length cDNA clone (RsGluR) encoding a putative glutamate receptor from small radish. An RsGluR: mGFP fusion protein was localized to the plasma membrane. In Arabidopsis thaliana overexpressing the full-length cDNA, glutamate treatment triggered greater Ca2+ influx in the root cells of transgenic seedlings than in those of the wild type. Transgenic plants exhibited multiple morphological changes such as necrosis at their tips and the margins of developing leaves, dwarf stature with multiple secondary inflorescences, and retarded growth, as previously observed in transgenic Arabidopsis overexpressing AtGluR3.2 [Kim et al. (2001)]. Microarray analysis showed that jasmonic acid (JA)-responsive genes including defensins and JA-biosynthetic genes were up-regulated. RsGluR overexpression also inhibited growth of a necrotic fungal pathogen Botrytis cinerea possibly due to up-regulation of the defensins. Based on these results, we suggest that RsGluR is a glutamate-gated Ca2+ channel located in the plasma membrane of higher plants and plays a direct or indirect role in defense against pathogen infection by triggering JA biosynthesis.
PTEN decreases in vivo vascularization of experimental gliomas in spite of proangiogenic stimuli. (2003)

Approximately 30-40% of malignant glial tumors exhibit mutations in the tumor suppressor gene, PTEN/MMAC. Additionally, these tumors are associated with (a) mutations in epidermal growth factor receptor (EGFR), leading to a pro-oncogenic constitutive activation, as well as amplification of its gene, and/or (b) mutations in p53, disrupting normal cellular homeostatic processes. Whereas PTEN/MMAC has been shown to possess antiangiogenic action, constitutively active EGFR or p53 gene defects have been associated with proangiogenic action. In this article, we asked if PTEN/MMAC gene transfer into human glioma cells that possess inactivating mutations of the PTEN/MMAC gene but also express either constitutively active EGFR (U87DeltaEGFR cells) or possess an inactivating mutation of p53 (U251 cells) still display inhibited angiogenesis in orthotopic and ectopic models of gliomas. Human glioma xenografts treated with PTEN/MMAC gene transfer exhibited significantly decreased vascularity both in an orthotopic and in an ectopic model. Taken in combination, these results provide strong evidence of PTEN/MMAC's role in regulating glioma angiogenesis even in the presence of strong proangiogenic signals provided by constitutive EGFR activation or p53 inactivation.
Suppression of crosstalk by using backside deep trench isolation for 1.12&#x03BC;m backside illuminated CMOS image sensor (2012)

1.12μm backside illuminated CMOS image sensor with backside deep trench isolation (DTI) has been demonstrated for the first time. DTI is fabricated on backside pixel surface after wafer bonding and grinding process. Backside DTI makes its layout simple because no transistor isolation exists on backside. We have confirmed about 50% reduction of crosstalk by using backside DTI. The crosstalk of 1.12μm backside DTI pixel is lower than that of 1.4μm BSI pixel. This technology will be promising for 1.12μm and beyond.
Optimization of spin-on-glass process for multilevel metal interconnects (2002)

Spin-on-glass (SOG), an interlayer dielectric material applied in liquid form to fill narrow gaps in the sub-dielectric surface and thus conducive to planarization, is an alternative to silicon dioxide (SiO/sub 2/) deposited using CVD processes. The similar electrical properties between SOG and silicon dioxide guarantee that the SOG technique will provide comparable benefits to SiO/sub 2/ as an inter-metal dielectric layer. In fact, SOG has a lower dielectric constant and thus provides for better electrical insulation. However, its inability to adhere to metal and problems such as cracking prevent the easy application of SOG technology to provide an interlayer dielectric in multilevel metal interconnect circuits, particularly in university processing labs. This paper shows that a thin layer of CVD silicon dioxide and a curing temperature below the sintering temperature of the metal interconnect layer promotes adhesion, reduces gaps, and prevents cracking. Electron-scanning microscope analysis has been used to demonstrate the success of the improved technique. This optimized process has been used in three batches of double-polysilicon, double-metal CMOS wafers fabricated at the Microelectronics Research Center of Georgia Tech to date.
Sertoli Cell-Enriched Fractions in Successful Islet Cell Transplantation (1993)

Prolonged survival of Islet- allo- and xenografts can be induced following implantation of the islets into the abdominal testis of diabetic rats. We previously showed that a factor released by Sertoli cells appears to be responsible for the protection of the intratesticular islet allo- and xenografts against rejection. The aim of this study was to examine whether an immunologically privileged site can be established in an organ site in vivo, other than the testis, such as the renal, subcapsular space, to make feasible the grafting of female recipients as well. A total of 36 male and 21 female, diabetic, PVG rats were divided into six different treatment groups: 1) Six male rats were grafted with islets from Sprague-Dawley (S-D) donor rats only. 2) Ten male rats were grafted with islets from (S-D) donors and were then given a short course of cyclosporine (CsA) posttransplantation. 3) Ten male rats were grafted with islets from (S-D) donors and with Sertoli cell-enriched fractions (SEF) from PVG donors but without CsA. 4) Ten male rats were grafted with a combination of islets from (S-D) and SEF from (PVG), donors, respectively, and CsA. 5) Ten female rats were given an identical combination of cells and CsA as depicted for group 5. 6) Ten female rats were grafted with a combination of islets and SEF, both cell types from S-D donors, and CsA. The results showed that 70% to 100% of the grafted rats in groups 1, 2, and 3 remained hyperglycemic.(ABSTRACT TRUNCATED AT 250 WORDS)
Fluorescence Polarization (FP) Assays for Monitoring Peptide‐Protein or Nucleic Acid‐Protein Binding (2009)

The technique of fluorescence polarization (FP) is based on the observation that when a fluorescently labeled molecule is excited by polarized light, it emits light with a degree of polarization that is inversely proportional to the rate of molecular rotation. This property of fluorescence can be used to measure the interaction of a small labeled ligand with a larger protein and provides a basis for direct and competition binding assays. FP assays are readily adaptable to a high-throughput format, have been used successfully in screens directed against a wide range of targets, and are particularly valuable in screening for inhibitors of protein-protein and protein-nucleic acid interactions when a small binding epitope can be identified for one of the partners. The protocols in this article describe a general procedure for development of FP assays to monitor binding of such a peptide or oligonucleotide to a protein of interest. Curr. Protoc. Chem Biol. 1:1-15. © 2009 by John Wiley & Sons, Inc.
Structure–Activity Relationship of 3,5-Diaryl-2-aminopyridine ALK2 Inhibitors Reveals Unaltered Binding Affinity for Fibrodysplasia Ossificans Progressiva Causing Mutants (2014)

There are currently no effective therapies for fibrodysplasia ossificans progressiva (FOP), a debilitating and progressive heterotopic ossification disease caused by activating mutations of ACVR1 encoding the BMP type I receptor kinase ALK2. Recently, a subset of these same mutations of ACVR1 have been identified in diffuse intrinsic pontine glioma (DIPG) tumors. Here we describe the structure-activity relationship for a series of novel ALK2 inhibitors based on the 2-aminopyridine compound K02288. Several modifications increased potency in kinase, thermal shift, or cell-based assays of BMP signaling and transcription, as well as selectivity for ALK2 versus closely related BMP and TGF-β type I receptor kinases. Compounds in this series exhibited a wide range of in vitro cytotoxicity that was not correlated with potency or selectivity, suggesting mechanisms independent of BMP or TGF-β inhibition. The study also highlights a potent 2-methylpyridine derivative 10 (LDN-214117) with a high degree of selectivity for ALK2 and low cytotoxicity that could provide a template for preclinical development. Contrary to the notion that activating mutations of ALK2 might alter inhibitor efficacy due to potential conformational changes in the ATP-binding site, the compounds demonstrated consistent binding to a panel of mutant and wild-type ALK2 proteins. Thus, BMP inhibitors identified via activity against wild-type ALK2 signaling are likely to be of clinical relevance for the diverse ALK2 mutant proteins associated with FOP and DIPG.
Combined Action of Fosfomycin with <i>β</i>-Lactam and Aminoglycoside Antibiotics (1977)

The combined action of fosfomycin with penicillin G, ampicillin and streptomycin was investigated. A total of 11 S. aureus and 10 E. coli were included in these studies. It has been shown that a combination of fosfomycin with penicillin G and streptomycin resulted in a synergistic effect. When S. aureus strains were tested, the combination of fosfomycin with penicillin G was more frequently effective than the combination of fosfomycin with streptomycin. The combinations of fosfomycin with ampicillin and streptomycin showed a similar synergistic effect on 7 of 10 E. coli strains. The antagonistic effect never resulted when the above-mentioned combination of antibiotics were used. The authors postulate that a combination of fosfomycin with beta-lactam or aminoglycoside antibiotics may be used in clinical practice and such a procedure should prevent an emergence of fosfomycin-resistant strains.
Ring Opening Metathesis Polymerization of Norbornene and Derivatives by the Triply Bonded Ditungsten Complex Na[W2(µ-Cl)3Cl4(THF)2]·(THF)3 (2012)

In this study, the reactions of the bimetallic compound Na[W2(µ-Cl)3Cl4(THF)2]·(THF)3 (1, (W 3 W)6+, a'2e'4) with norbornene (NBE) and some of its derivatives (5-X-2-NBE; X = COOH (NBE–COOH), OH (NBE–OH), CN (NBE–CN), COOMe (NBE–COOMe), CH=CH2 (VNBE); norbornadiene (NBD)) are described. Complex 1 contains a tungsten–tungsten triple bond, bearing three halide bridges and two labile THF ligands, in a cisoidal relationship along the metal–metal axis. The complex was found to be a highly efficient room temperature homogeneous and heterogeneous unicomponent initiator for the catalytic ring opening metathesis polymerization (ROMP) of most substrates. NBE provides polynorbornene (PNBE) of high molecular weight (Mw) in high yields, soluble in organic solvents. The reaction proceeds with high cis-stereoselectivity (80%–86% cis), independently of the reaction conditions. Strongly coordinating pendant groups (–COOH, –OH, –CN) deactivate 1, whereas substrates bearing softer ones (–COOMe, –CH=CH2) are quantitatively polymerized. NBD gives quantitatively insoluble PNBD. The polymers have been characterized by 1H, 13C NMR and Size Exclusion Chromatography (SEC). Monitoring the reactions in situ by 1H NMR (1/NBD or NBE) provides direct evidence of the metathetical nature of the polymerization with the observation of the active tungsten alkylidene propagating polymeric chains. Mechanistic aspects of the reactions are discussed.
Simultaneous independent temperature and strainmeasurement usingin-fibre Bragg grating sensors (1996)

A new technique for the simultaneous, independent measurement of temperature and strain using in-fibre Bragg grating sensors is proposed and demonstrated. Two Bragg gratings with closely spaced centre wavelengths are written either side of a splice between two fibres of different diameter. The gratings show similar temperature sensitivities but different strain responses to an applied stress. Maximum errors of ±17 µɛ and ±1° are reported over 2500 µɛ and 120°C measurement ranges.
Use of X-ray Co-crystal Structures and Molecular Modeling To Design Potent and Selective Non-peptide Inhibitors of Cathepsin K (1998)

ADVERTISEMENT RETURN TO ISSUEPREVCommunicationNEXTUse of X-ray Co-crystal Structures and Molecular Modeling To Design Potent and Selective Non-peptide Inhibitors of Cathepsin KRenee L. DesJarlais, Dennis S. Yamashita, Hye-Ja Oh, Irene N. Uzinskas, Karl F. Erhard, Andrew C. Allen, R. Curtis Haltiwanger, Baoguang Zhao, Ward W. Smith, Sherin S. Abdel-Meguid, Karla D'Alessio, Cheryl A. Janson, Michael S. McQueney, Thaddeus A. Tomaszek, Mark A. Levy, and Daniel F. VeberView Author Information Departments of Physical and Structural Chemistry Medicinal Chemistry, Analytical Chemistry Structural Biology, Protein Biochemistry and Molecular Recognition SmithKline Beecham Pharmaceuticals King of Prussia, Pennsylvania 19406 Cite this: J. Am. Chem. Soc. 1998, 120, 35, 9114–9115Publication Date (Web):August 22, 1998Publication History Received8 April 1998Published online22 August 1998Published inissue 1 September 1998https://pubs.acs.org/doi/10.1021/ja981171vhttps://doi.org/10.1021/ja981171vrapid-communicationACS PublicationsCopyright © 1998 American Chemical SocietyRequest reuse permissionsArticle Views419Altmetric-Citations34LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (4)»Supporting Information Supporting Information SUBJECTS:Aromatic compounds,Crystal structure,Inhibitors,Monomers,Peptides and proteins Get e-Alerts
Microfluidics with Droplets (2005)

Chipping in for microlabs: A capillary with segmented sample droplets was coupled to a microfluidic chip for the high-throughput screening of samples on the nanoliter scale. A three-phase system was developed for the segmentation; the sample droplets are surrounded by a fluorinated carrier fluid and additionally separated by gas bubbles. The ultimate goal in this area of research is a pocket-sized laboratory.
Akt-Dependent Phosphorylation of p21Cip1 Regulates PCNA Binding and Proliferation of Endothelial Cells (2001)

The protein kinase Akt is activated by growth factors and promotes cell survival and cell cycle progression. Here, we demonstrate that Akt phosphorylates the cell cycle inhibitory protein p21(Cip1) at Thr 145 in vitro and in intact cells as shown by in vitro kinase assays, site-directed mutagenesis, and phospho-peptide analysis. Akt-dependent phosphorylation of p21(Cip1) at Thr 145 prevents the complex formation of p21(Cip1) with PCNA, which inhibits DNA replication. In addition, phosphorylation of p21(Cip1) at Thr 145 decreases the binding of the cyclin-dependent kinases Cdk2 and Cdk4 to p21(Cip1) and attenuates the Cdk2 inhibitory activity of p21(Cip1). Immunohistochemistry and biochemical fractionation reveal that the decrease of PCNA binding and regulation of Cdk activity by p21(Cip1) phosphorylation is not caused by altered intracellular localization of p21(Cip1). As a functional consequence, phospho-mimetic mutagenesis of Thr 145 reverses the cell cycle-inhibitory properties of p21(Cip1), whereas the nonphosphorylatable p21(Cip1) T145A construct arrests cells in G(0) phase. These data suggest that the modulation of p21(Cip1) cell cycle functions by Akt-mediated phosphorylation regulates endothelial cell proliferation in response to stimuli that activate Akt.
Relevance of CD6-Mediated Interactions in T Cell Activation and Proliferation (2004)

CD6 is a cell surface receptor expressed on immature thymocytes and mature T and B1a lymphocytes. The ultimate function of CD6 has not been deciphered yet, but much evidence supports a role for CD6 in T cell activation and differentiation. In this study, we show that a fraction of CD6 molecules physically associates with the TCR/CD3 complex by coimmunoprecipitation, cocapping, and fluorescence resonance energy transfer experiments. Image analysis of Ag-specific T-APC conjugates demonstrated that CD6 and its ligand, activated leukocyte cell adhesion molecule (CD166), colocalize with TCR/CD3 at the center of the immunological synapse, the so-called central supramolecular activation cluster. The addition of a soluble rCD6 form significantly reduced the number of mature Ag-specific T-APC conjugates, indicating that CD6 mediates early cell-cell interactions needed for immunological synapse maturation to proceed. This was in agreement with the dose-dependent inhibition of CD3-mediated T cell proliferation induced by soluble rCD6. Taken together, our data illustrate the important role played by the intra- and intercellular molecular interactions mediated by CD6 during T cell activation and proliferation processes.
Antitoxin Levels in Botulism Patients Treated with Trivalent Equine Botulism Antitoxin to Toxin Types A, B, and E (1984)

Serum levels of equine-botulism antitoxin to toxin types A, B, and E were measured in four type-A botulism patients who had received equine-botulism antitoxin. High circulating levels capable of neutralizing in excess of 1 X 10(8), 9 X 10(7), and 6 X 10(6) 50% mouse lethal doses of toxin of types A, B, and E, respectively, were detected. There was little depletion of type-A antitoxin even though two of the patients had circulating type-A toxin before treatment. The half-life for antitoxin persistence for one patient was calculated as being 6.5, 7.6, and 5.3 days for antitoxin types A, B, and E, respectively. Antitoxin levels were not proportionate to the amount (range, 2-4 vials) injected and did not appear to be affected by whether the route of administration was iv or im. Peak serum levels of antitoxin were 10-1,000 times higher than amounts needed to neutralize the toxin measured in the serum of these and other patients with botulism.
Bombesin Improves Survival from Methotrexate-Induced Enterocolitis (1994)

Bombesin significantly improved survival in a lethal model of MTX-induced enterocolitis, possibly by maintaining gut mucosal structure. Administration of bombesin to patients receiving chemotherapy may be clinically useful in preventing the severe enterocolitis induced by various chemotherapeutic agents.
Semiconductor Quantum Dots for Photodynamic Therapy (2003)

The applicability of semiconductor QDs in photodynamic therapy (PDT) was evaluated by studying the interaction between CdSe QDs with a known silicon phthalocyanine PDT photosensitizer, Pc4. The study revealed that the QDs could be used to sensitize the PDT agent through a fluorescence resonance energy transfer (FRET) mechanism, or interact directly with molecular oxygen via a triplet energy-transfer process (TET). Both mechanisms result in the generation of reactive singlet oxygen species that can be used for PDT cancer therapy.
Role of Endothelin-1 in Hypertension (1999)

Endothelin-1 (ET-1) is overexpressed in the vascular wall in certain models of experimental hypertension: deoxycorticosterone acetate salt-treated rats, deoxycorticosterone acetate salt-treated spontaneously hypertensive rats (SHR), stroke-prone SHR, Dahl salt-sensitive rats, angiotensin II-infused rats, and 1-kidney 1 clip Goldblatt rats; it is not overexpressed in SHR, 2-kidney 1-clip hypertensive rats, or L-NAME-treated rats. In hypertensive rats without generalized vascular overexpression, however, expression of ET-1 was often enhanced in intramyocardial coronary arteries, suggesting a role of endothelin in myocardial ischemia in hypertension. In rats overexpressing ET-1, ET(A/B) and ET(A)-selective receptor antagonists lowered blood pressure and reduced vascular growth, particularly in small arteries, beyond what could be attributed to blood pressure lowering, suggesting a direct effect of ET-1 on growth. Hypertensive rats treated with endothelin antagonists are protected from stroke and renal injury. The ET(A/B) antagonist bosentan induced blood-pressure reductions in mildly hypertensive patients similar to those achieved with an angiotensin-converting enzyme inhibitor. Moderately to severely hypertensive patients presented with enhanced expression of prepro-ET-1 mRNA in the endothelium of subcutaneous resistance arteries, suggesting that these stages of hypertension may respond particularly well to endothelin antagonism. Hypertensive patients with coronary artery disease have increased arterial expression of ET-1, and increased plasma levels of immunoreactive endothelin have been described in black patients. ET-1 plays an important role in atherosclerosis, for which hypertension is an important risk factor. Thus, ET-1 may be involved in experimental and human hypertension. Endothelin antagonists may prove effective as disease-modifying agents if they are shown clinically, as they are experimentally, to offer target organ protection and reduce long-term complications of hypertension. This remains to be demonstrated in humans.