gebhart/patrepeval huggingface dataset:
Synthesis of picenadol via metallo enamine alkylation methodology (1989)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSynthesis of picenadol via metallo enamine alkylation methodologyCharles J. Barnett, Catherine R. Copley-Merriman, and James MakiCite this: J. Org. Chem. 1989, 54, 20, 4795–4800Publication Date (Print):September 1, 1989Publication History Published online1 May 2002Published inissue 1 September 1989https://pubs.acs.org/doi/10.1021/jo00281a019https://doi.org/10.1021/jo00281a019research-articleACS PublicationsRequest reuse permissionsArticle Views735Altmetric-Citations18LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Ultrastructural studies of the early events of the human sperm acrosome reaction as initiated by human follicular fluid (1988)

It has been suggested that the morphology of the human sperm acrosome reaction (AR) is markedly different from that of other mammalian sperm. The present study examines the fine structural events of the early stages of the human sperm AR as initiated by preovulatory human follicular fluid. Human sperm, capacitated in vitro for 6 hr at 40 degrees C (90% motility) were diluted with equal volumes of follicular fluid before fixing in cacodylate-buffered glutaraldehyde at 5, 10, 15, 20, and 180 sec. Fixed sperm were treated with either tannic acid or thiocarbohydrazine and OsO4. Over 2,000 sperm were viewed. By 5 sec, 2% of the sperm had initiated the AR. By 15 sec, 8% of the sperm were in some stage of the reaction, and after 180 sec 40% of the sperm had completed the acrosome reaction. The initial stages of the human AR are characterized by a swelling or decondensation of the acrosomal matrix. The fusion between the plasma membrane and outer acrosomal membrane begins at the most anterior tip of the head and progresses toward the equatorial segment. Fusion and fenestration ended at the equatorial segment. With thiocarbohydrazine + OsO4 fixation the fused membranes are distinct hybrid vesicles with the outer acrosomal membrane being far more electron dense. The acrosomal matrix is retained by 20 sec, but by 180 sec the matrix is completely dispersed, even when viewed after tannic acid fixation. Also by 180 sec, vesicles were being progressively lost. It is therefore concluded that the morphology of the human sperm AR, as initiated by human follicular fluid, is not unique, but is similar to that described for other mammalian sperm.
Cardiotrophin-1 (1995)

Cardiotrophin-1 (CT-1) is a newly isolated cytokine that was identified based on its ability to induce cardiac myocyte hypertrophy. It is a member of the family of cytokines that includes interleukins-6 and -11, leukemia inhibitory factor (LIF), ciliary neurotrophic factor, and oncostatin M. These cytokines induce a pleiotropic set of growth and differentiation activities via receptors that use a common signaling subunit, gp130. In this work we determine the activity of CT-1 in six in vitro biological assays and examine the composition of its cell surface receptor. We find that CT-1 is inactive in stimulating the growth of the hybridoma cell line, B9 and inhibits the growth of the mouse myeloid leukemia cell line, M1. CT-1 induces a phenotypic switch in rat sympathetic neurons and promotes the survival of rat dopaminergic and chick ciliary neurons. CT-1 also inhibits the differentiation of mouse embryonic stem cells. CT-1 and LIF cross-compete for binding to M1 cells, Kd [CT-1] approximately 0.7 nM, and this binding is inhibited by an anti-gp130 monoclonal antibody. Both ligands can be specifically cross-linked to a protein on M1 cells with the mobility of the LIF receptor (approximately 200 kDa). In addition, CT-1 binds directly to a purified, soluble form of the LIF receptor in solution (Kd approximately 2 nM). These data show that CT-1 has a wide range of hematopoietic, neuronal, and developmental activities and that it can act via the LIF receptor and the gp130 signaling subunit.
1-ALKYL-2-IMIDAZOLIDINETHIONES (1955)

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Filling Your Shelves: Synthesizing Diverse Style-Preserving Artifact Arrangements (2013)

Our homes and workspaces are filled with collections of dozens of artifacts laid out on surfaces such as shelves, counters, and mantles. The content and layout of these arrangements reflect both context, e.g., kitchen or living room, and style, e.g., neat or messy. Manually assembling such arrangements in virtual scenes is highly time consuming, especially when one needs to generate multiple diverse arrangements for numerous support surfaces and living spaces. We present a data-driven method especially designed for artifact arrangement which automatically populates empty surfaces with diverse believable arrangements of artifacts in a given style. The input to our method is an annotated photograph or a 3D model of an exemplar arrangement, that reflects the desired context and style. Our method leverages this exemplar to generate diverse arrangements reflecting the exemplar style for arbitrary furniture setups and layout dimensions. To simultaneously achieve scalability, diversity and style preservation, we define a valid solution space of arrangements that reflect the input style. We obtain solutions within this space using barrier functions and stochastic optimization.
C-to-U editing and site-directed RNA editing for the correction of genetic mutations (2017)

Cytidine to uridine (C-to-U) editing is one type of substitutional RNA editing. It occurs in both mammals and plants. The molecular mechanism of C-to-U editing involves the hydrolytic deamination of a cytosine to a uracil base. C-to-U editing is mediated by RNA-specific cytidine deaminases and several complementation factors, which have not been completely identified. Here, we review recent findings related to the regulation and enzymatic basis of C-to-U RNA editing. More importantly, when C-to-U editing occurs in coding regions, it has the power to reprogram genetic information on the RNA level, therefore it has great potential for applications in transcript repair (diseases related to thymidine to cytidine (T>C) or adenosine to guanosine (A>G) point mutations). If it is possible to manipulate or mimic C-to-U editing, T>C or A>G genetic mutation-related diseases could be treated. Enzymatic and non-enzymatic site-directed RNA editing are two different approaches for mimicking C-to-U editing. For enzymatic site-directed RNA editing, C-to-U editing has not yet been successfully performed, and in theory, adenosine to inosine (A-to-I) editing involves the same strategy as C-to-U editing. Therefore, in this review, for applications in transcript repair, we will provide a detailed overview of enzymatic site-directed RNA editing, with a focus on A-to-I editing and non-enzymatic site-directed C-to-U editing.
Optimization of primers for cloning libraries of mouse immunoglobulin genes using the polymerase chain reaction (1993)

We have optimized primers for cloning libraries of murine heavy and light chain variable regions using the polymerase chain reaction. Since we are interested in cloning murine Fab fragments for expression in bacterial cells, the heavy chain primers were designed to clone Fd fragments comprising the heavy chain variable domain and the first domain of the IgG constant region. The light chain primers were designed to clone the entire murine kappa chain. Using ten degenerate 5' primers and a degenerate 3' primer to amplify murine Fd and seven degenerate 5' primers with a single 3' primer to amplify kappa chains, a diverse repertoire of mouse variable regions was cloned from mouse spleens.
Structurally Refined β‐Lactones as Potent Inhibitors of Devastating Bacterial Virulence Factors (2009)

Disarmed forces: Inhibition of the central virulence regulator ClpP by structurally refined beta-lactones resulted in dramatically reduced production of devastating virulence factors, including pyrogenic toxin superantigens derived from pathogenic multiresistant Staphylococcus aureus strains. Targeting of this virulence regulator could present an attractive strategy for neutralizing the harmful effects of bacterial pathogens, and help the host immune response to eliminate the disarmed bacteria.
Semantic Object Selection (2014)

Interactive object segmentation has great practical importance in computer vision. Many interactive methods have been proposed utilizing user input in the form of mouse clicks and mouse strokes, and often requiring a lot of user intervention. In this paper, we present a system with a far simpler input method: the user needs only give the name of the desired object. With the tag provided by the user we do a text query of an image database to gather exemplars of the object. Using object proposals and borrowing ideas from image retrieval and object detection, the object is localized in the target image. An appearance model generated from the exemplars and the location prior are used in an energy minimization framework to select the object. Our method outperforms the state-of-the-art on existing datasets and on a more challenging dataset we collected.
Biodegradability and cell‐mediated contraction of porous collagen scaffolds: The effect of lysine as a novel crosslinking bridge (2004)

A novel crosslinking method was adopted to modify the porous collagen scaffolds by using a water-soluble carbodiimide, 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide (EDAC) and N-hydroxysuccinimide (NHS) in the presence of lysine, which functions as a crosslinking bridge. In vitro biodegradation tests proved that in the presence of lysine the biostability of the EDAC crosslinked scaffolds was greatly enhanced. The biostability of the resultant scaffolds was also elucidated as a function of the concentrations of lysine and EDAC/NHS. Compared to the Col-DHT, the ability of the Col-EDAC and the Col/Lys to resist cell-mediated contraction (CMC) was greatly enhanced. Yet no obvious difference between the Col-EDAC and the Col/Lys was found with respect to CMC. SEM observations showed that the microstructure of the crosslinked scaffolds could be largely preserved after fibroblast seeding. As a result, MTT assays proved that the fibroblasts in the Col/Lys scaffolds proliferated faster compared to the DHT-treated one on the assumption that the cell viability was preserved to a similar level. Histological section results indicated that the Col/Lys scaffolds had the ability to accelerate the cell infiltration and proliferation. All these results demonstrated that this novel crosslinking method is an effective way to achieve a collagen scaffold with improved biostability and a more stable structure, which can resist cell-mediated contraction. (c) 2004 Wiley Periodicals, Inc. J Biomed Mater Res 71A: 334-342, 2004.
Screen-Printable Sol−Gel Enzyme-Containing Carbon Inks (1996)

Enzymes usually cannot withstand the high-temperature curing associated with the thick-film fabrication process and require a separate immobilization step in connection with the production of single-use biosensors. We report on the development of sol-gel-derived enzyme-containing carbon inks that display compatibility with the screen-printing process. Such coupling of sol-gel and thick-film technologies offers a one-step fabrication of disposable enzyme electrodes, as it obviates the need for thermal curing. The enzyme-containing sol-gel carbon ink, prepared by dispersing the biocatalyst, along with the graphite powder and a binder, within the sol-gel precursors, is cured very rapidly (10 min) at low temperature (4 °C). The influence of the ink preparation conditions is explored, and the sensor performance is evaluated in connection with the incorporation of glucose oxidase or horseradish peroxidase. The resulting strips are stable for at least 3 months. Such sol-gel-derived carbon inks should serve as hosts for other heat-sensitive biomaterials in connection with the microfabrication of various thick-film biosensors.
A Similarity Measure Based on Species Proportions (2005)

ABSTRACT There are several indices for measuring the similarity of two populations, including the ratio of the number of shared species to the number of distinct species (Jaccard's index) and the conditional probability of observing a shared species (Smith et al., 1996 Smith , W. , Solow , A. R. , Preston , P. E. ( 1996 ). An estimator of species overlap using a modified beta-binomial model. Biometrics 52 : 1472 – 1477 . [CSA] [CROSSREF] [Crossref], [Web of Science ®] , [Google Scholar]). However, these indices only take into account the number of species and species proportions of shared species. In this article, we propose a new similarity index which includes the species proportions of both the shared and non shared species in each population, and also propose a Nonparametric Maximum Likelihood Estimator (NPMLE) for this index. Bootstrap and delta methods are used to evaluate the standard errors of the NPMLE. Based on a loss function, we also compare a class of nonparametric estimators for the proposed index in various situations.
Inductive graphs and functional graph algorithms (2001)

We propose a new style of writing graph algorithms in functional languages which is based on an alternative view of graphs as inductively defined data types. We show how this graph model can be implemented efficiently, and then we demonstrate how graph algorithms can be succinctly given by recursive function definitions based on the inductive graph view. We also regard this as a contribution to the teaching of algorithms and data structures in functional languages since we can use the functional-style graph algorithms instead of the imperative algorithms that are dominant today.
Cisplatin, vinblastine, and bleomycin in the treatment of metastatic melanoma: a phase II study of the Southeastern Cancer Study Group. (1985)

Fifty-one patients with metastatic melanoma were treated with cisplatin, vinblastine, and bleomycin. Of the 50 evaluable patients, 11 (22%) achieved an objective response, including three complete (6%) and eight partial (16%) responses. Four of the 11 responding patients had previously received dacarbazine; the remaining patients had received no prior chemotherapy. Responses were noted in cutaneous and lymph node sites as well as visceral metastases. However, with one exception, all responding patients with visceral involvement had lung metastases. Response durations were brief and toxicity was substantial. Nadir leukocyte counts less than 0.5 X 10(9)/L occurred in 28% of the patients. Debilitating neurotoxicity, primarily paralytic ileus, and severe nausea and emesis were experienced by 24% of the patients. The combination of cisplatin, vinblastine, and bleomycin is not sufficiently beneficial to warrant its use in metastatic melanoma.
Pro-apoptotic Activity of Novel Isatin-Schiff Base Copper(II) Complexes Depends on Oxidative Stress Induction and Organelle-selective Damage (2007)

We characterized the pro-apoptotic activity of two new synthesized isatin-Schiff base copper(II) complexes, obtained from isatin and 1,3-diaminopropane or 2-(2-aminoethyl)pyridine: (Cu(isapn)) and (Cu(isaepy)(2)), respectively. We demonstrated that these compounds trigger apoptosis via the mitochondrial pathway. The early induction of the p53/p21 system indicates a role for p53 in cell death, however, experiments carried out with small interfering RNA against p53, or with cells lacking p53, support that a p53-independent mechanism can also occur. The extent of apoptosis mirrors the kinetics of intracellular copper uptake. Particularly, Cu(isaepy)(2) enters the cells more efficiently and specifically damages nuclei and mitochondria, as evidenced by atomic absorption analysis of copper content and by the extent of nuclear and mitochondrial integrity. Conversely, Cu(isapn), although less permeable, induces a wide-spread oxidative stress, as demonstrated by analyses of reactive oxygen species concentration, and oxidation of proteins and lipids. The increase of the antioxidant defense, through the overexpression of Cu,Zn-SOD, partially counteracts cell death; whereas retinoic acid-mediated differentiation completely rescues cells from apoptosis induced by both compounds. The activation of JNK- and Akt-mediated phosphorylative pathways has been found to be not functional for apoptosis induction. On the contrary, apoptosis significantly decreased when the analogous zinc complex was used or when Cu(isaepy)(2) was incubated in the presence of a copper chelator. Altogether, our data provide evidence for a dual role of these copper(II) complexes: they are able to vehicle copper into the cell, thus producing reactive oxygen species, and could behave as delocalized lipophilic cation-like molecules, thus specifically targeting organelles.
IgE and lgG4 Binding to Synthetic Peptides of the Cat <i>(Felis domesticus)</i> Major Allergen <i>Fel d</i> I (1994)

Specificities of IgE and IgG4 antibodies in 12 cat-allergic patients were compared with respect to their reactivity towards 3 IgE-binding synthetic peptides of Felis domesticus allergen 1 (Fel dI): peptides 25-38 and 46-59 of chain 1 and peptide 15-28 of chain 2. Peptides were coupled to Sepharose and anti-Fel dI antibodies were isolated by affinity chromatography. Fel dI-specific IgE- and IgG4 antibody activity in the peptide eluates was measured using Fel dI binding assays. Fel dI-specific IgE/IgG4 ratios in the eluates from peptide-Sepharose were determined and compared with the IgE/IgG4 ratios in the eluates from Fel dI-Sepharose. The mean ratio Fel dI-specific IgE/IgG4 in the peptide eluates (0.84; range 0.06-4.6) was significantly higher than the mean ratio in the eluates from Fel dI-Sepharose (0.31; range 0.13-1.1), demonstrating a higher reactivity of IgE antibodies with the peptides, compared to IgG4. These results indicate differences between the B cells producing IgE antibodies and the B cells producing IgG4 antibodies.
Ultrasonic drug delivery in Oncology. (2015)

Ultrasound-assisted drug delivery is an emerging technique that has the advantage of being non-invasive, efficiently and specifically targeted and controllable. While systemic drugs often show detrimental side effects, their ultrasound-triggered local release at the selected tissue may improve safety and specifity of therapy. An increasing amount of animal and preclinical studies demonstrates how ultrasound can also be used for increasing the efficacy of chemotherapeutic drug release to solid tumors. In particular, this technique may be functional to reach uniform delivery of chemotherapeutic agents throughout tumors, which is naturally restricted by their abnormal vascularization and interstitial pressure. This review deals with the physical mechanisms of ultrasound, the different kinds of drug carriers (microbubbles, liposomes and micelles) and the biological phenomena useful for cancer treatment (hyperthermia, sonoporation, enhanced extravasation, sonophoresis and blood-brain barrier disruption), showing how much ultrasonic drug delivery is a promising method in the oncological field.
C60−exTTF−C60 Dumbbells:  Cooperative Effects Stemming from Two C60s on the Radical Ion Pair Stabilization (2005)

[structure: see text] The presence of a second C(60) cage in C(60)-exTTF-C(60) triads [exTTF = 9,10-bis(1,3-dithiol-2-ylidene)-9,10-anthraquinone] has beneficial effects on the stabilization of the radical ion pair formed upon irradiation in comparison with the related C(60)-exTTF dyad. Although C(60)-exTTF-C(60) ensembles show no electronic interaction between the electroactive units in the ground state, their irradiation leads to C(60)(*)(-)-exTTF(*)(+)-C(60) species with lifetimes on the order of 600 ns in benzonitrile; these lifetimes are twice those determined for the analogous C(60)-exTTF dyad.
C-ME: A 3D Community-Based, Real-Time Collaboration Tool for Scientific Research and Training (2008)

The need for effective collaboration tools is growing as multidisciplinary proteome-wide projects and distributed research teams become more common. The resulting data is often quite disparate, stored in separate locations, and not contextually related. Collaborative Molecular Modeling Environment (C-ME) is an interactive community-based collaboration system that allows researchers to organize information, visualize data on a two-dimensional (2-D) or three-dimensional (3-D) basis, and share and manage that information with collaborators in real time. C-ME stores the information in industry-standard databases that are immediately accessible by appropriate permission within the computer network directory service or anonymously across the internet through the C-ME application or through a web browser. The system addresses two important aspects of collaboration: context and information management. C-ME allows a researcher to use a 3-D atomic structure model or a 2-D image as a contextual basis on which to attach and share annotations to specific atoms or molecules or to specific regions of a 2-D image. These annotations provide additional information about the atomic structure or image data that can then be evaluated, amended or added to by other project members.
Mebendazole elicits a potent antitumor effect on human cancer cell lines both in vitro and in vivo. (2002)

We have found that mebendazole (MZ), a derivative of benzimidazole, induces a dose- and time-dependent apoptotic response in human lung cancer cell lines. In this study, MZ arrested cells at the G(2)-M phase before the onset of apoptosis, as detected by using fluorescence-activated cell sorter analysis. MZ treatment also resulted in mitochondrial cytochrome c release, followed by apoptotic cell death. Additionally, MZ appeared to be a potent inhibitor of tumor cell growth with little toxicity to normal WI38 and human umbilical vein endothelial cells. When administered p.o. to nu/nu mice, MZ strongly inhibited the growth of human tumor xenografts and significantly reduced the number and size of tumors in an experimental model of lung metastasis. In assessing angiogenesis, we found significantly reduced vessel densities in MZ-treated mice compared with those in control mice. These results suggest that MZ is effective in the treatment of cancer and other angiogenesis-dependent diseases.
Aromatic polyanhydrides, a new class of high melting fiber‐forming polymers (1958)

Abstract Contrary to the aliphatic polyanhydrides prepared by Carothers, polyanhydrides containing aromatic nuclei in the main chain possess high melting points and good hydrolytic stability. A number of different aromatic polyanhydrides were prepared. Their preparation and properties, such as fiber‐forming properties, melting points, glass transition temperatures, and crystallinity, are described. An effort has been made to correlate some selected physical properties, such as melting points and crystallizability, with the chemical structure of the particular polyanhydride. The influence of p ‐phenylene, m ‐phenylene, carbonyl, ether, thioether groups, etc. on the properties of the polymers is discussed.