gebhart/patrepeval huggingface dataset:
Endogenous Marinobufagenin-like Immunoreactive Factor and Na + ,K + ATPase Inhibition During Voluntary Hypoventilation (1995)

In previous studies investigators found that conditioned hypoventilatory breathing potentiated a sodium-sensitive form of hypertension in dogs that was not mediated by sympathetic nervous system arousal. Our study investigated effects of 30 minutes of voluntary hypoventilation, maintained by a respiratory gas monitor and feedback procedure, in 16 normotensive humans of both sexes on (1) plasma concentrations of endogenous digitalis-like factors (ouabain-like and marinobufagenin-like immunoreactivity), (2) activity of erythrocyte Na+, K+ -ATPase, (3) inhibitory activity of plasma Na+, K+ -ATPase, and (4) blood pressure. Increased end tidal PCO2 (41 +/- 0.78 mm Hg versus 37.6 +/- 1.03 mm Hg) was associated with (1) an increase in plasma marinobufagenin-like immunoreactivity (1.23 +/- 0.47 versus 4.96 +/- 1.19 nmol/L), (2) an inhibition of Na+, K+ -ATPase in red blood cells (3.68 +/- 0.22 versus 2.15 +/- 0.25 mmol Pi/mL-1/h-1; P < .01), (3) increase in plasma Na+, K+ -ATPase inhibitory activity (34.9 +/- 4.0% versus 48.8 +/- 2.1%, P < .02), and (4) increases in systolic (112.4 +/- 2.6 versus 107.6 +/- 1.8 mm Hg) and diastolic (73.5 +/- 2.1 versus 68.8 +/- 2.1 mm Hg) blood pressures. Plasma levels of ouabain-like immunoreactivity did not increase significantly. Incubation of erythrocytes obtained during hypoventilation with antidigoxin antibody restored the Na+, K+ -ATPase activity (3.99 +/- 0.34 mmol Pi/mL-1/h-1). Cessation of hypoventilation was associated with decreases in diastolic blood pressure (70.5 +/- 2.2 mm Hg) and restoration of Na+, K+ -ATPase activity in erythrocytes (2.99 +/- 0.43 mmol Pi/mL-1/h1).(ABSTRACT TRUNCATED AT 250 WORDS)
A dual-frequency electrical impedance tomography system (1989)

An electrical impedance tomography (EIT) system has been constructed, operating at two frequencies, 40.96 and 81.92 kHz, for investigating the practicability of the dual-frequency imaging method discussed theoretically in a previous paper. For testing the system, a phantom with a frequency-dependent electrical conductivity was designed. The properties of the phantom can be adjusted to match the frequency dependence observed in a given type of tissue. Dual-frequency images were obtained from a phantom simulating liver and also from 200 g of porcine liver in a saline tank. Prior to image reconstruction, it was necessary to apply a correction to the data to cancel the effects of stray capacitance within the electronics.
MAP Kinases in the Immune Response (2002)

MAP kinases are among the most ancient signal transduction pathways and are widely used throughout evolution in many physiological processes. In mammalian species, MAP kinases are involved in all aspects of immune responses, from the initiation phase of innate immunity, to activation of adaptive immunity, and to cell death when immune function is complete. In this review, we summarize recent progress in understanding the function and regulation of MAP kinase pathways in these phases of immune responses.
Improving patent retrieval system using ontology (2005)

The importance of patents is increasing as intellectual property becomes a core part of any industry. Most commercial patent retrieval systems are based on Boolean models, which are not capable of ranking similarity between queries and documents. In this study, we developed a patent retrieval system (PISS: patent information service system) which uses a vector space model and ontology to improve precision of search results and rank them by similarity. In other to evaluate the performance of query expansion, we tested ten queries, and found that the precision of search results was improved by an average of 36.2%. Ontology and additional search terms are automatically displayed next to search results for users' convenience.
An integrated floating point vector processor for DSP and scientific computing (2003)

The architecture of a high-performance floating-point microprocessor intended for computation-intensive applications is presented. Utilizing a massively parallel execution unit, very high bandwidth onchip memory, and extensive parallel address calculation hardware, the processor is expected to achieve peak execution rates of 400 MFLOPS for single-precision floating-point numbers. This type of performance is competitive with that of popular mainframe vector processors.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Lack of C3 Affects Th2 Response Development and the Sequelae of Chemotherapy in Schistosomiasis (2003)

The role of the third component of complement (C3) during schistosome infection was investigated using mice deficient in C3. While no effect was observed 8 wk after infection on worm development or liver pathology, Ag-specific Th2-associated cytokine production (IL-13, IL-5, IL-6, and IL-10) was significantly reduced, and IFN-gamma production was enhanced in the absence of C3. IgG1 and IgE, but not IgG2a or IgM, Ab responses were also significantly impaired in infected C3(-/-) mice, suggesting that C3 may play a role in IL-4-mediated Th2 response enhancement during schistosome infection. Furthermore, C3-deficient mice could not effectively clear adult worms after praziquantel (PZQ) treatment and suffered increased morbidity due to the overproduction of proinflammatory mediators following drug administration. However, the ischemic liver damage that normally accompanies PZQ administration in infected wild-type mice was substantially reduced in treated C3-deficient mice, probably due to the absence of dead or dying worms in the livers of these animals. Together these results indicate that C3 enhances Th2 responses during schistosome infection, potentiates PZQ-mediated parasite clearance, and reduces chemotherapy-induced proinflammatory mediator production.
Sequence analysis of zein cDNAs obtained by an efficient mRNA cloning method (1983)

A cDNA library was generated from mRNA isolated from the developing endosperm of W22 maize inbred. cDNA clones for zein, the maize storage protein family, were isolated and analyzed by DNA sequencing. The DNA sequences of four clones containing cDNA copies of mRNAs belonging to one zein subfamily were determined. The data support the following conclusions: a) genes encoding the larger of the two zein species contain eleven instead of nine repeat units within the coding sequence of the gene; b) transcription can be terminated at either of the two polyadenlation signals and c) transcription starts 31 basepairs downstream from the first T in the TATA box. To facilitate this analysis a new method for the construction of cDNA libraries was developed. The mRNA was annealed to linearized and oligo-dT tailed pUC9 plasmid DNA, which then primed synthesis of the first strand of the cDNA. Oligo-dG tails were added to the cDNA-plasmid molecules, which were then centrifuged through an alkaline sucrose gradient. The gradient step removed small molecules and separated the two cDNAs which were formerly attached to the same double stranded plasmid molecule. An excess of oligo-dC tailed denatured pUC9 DNA was added and the DNA was renatured under conditions that favor the circularization of monomers by the oligo-dC and oligo-dG tails. The oligo-dC tail served as primer for the synthesis of the second strand of the cDNA. The library was screened by colony hybridization using 32P-labelled cDNA and DNA from genomic zein clones as probes. We obtained 20,000 clones hybridizing total cDNA starting with 1 microgram of plasmid DNA and 1 microgram of mRNA.
Increased 8,12-iso-iPF2?-VI in Alzheimer's disease: Correlation of a noninvasive index of lipid peroxidation with disease severity (2000)

The isoprostane 8,12-iso-iPF2α-VI is a sensitive and specific marker of in vivo lipid peroxidation. We found elevated levels in the urine, blood, and cerebrospinal fluid of patients with Alzheimer's disease (AD) that correlated with measures of cognitive and functional impairment, established biomarkers of AD pathology (cerebrospinal fluid tau and amyloid) and the number of apolipoprotein E ε4 alleles. These results suggest that 8,12-iso-iPF2α-VI is a useful biomarker of oxidative damage in AD. Ann Neurol 2000;48:809–812
Lighting Estimation in Outdoor Image Collections (2014)

Large scale structure-from-motion (SfM) algorithms have recently enabled the reconstruction of highly detailed 3-D models of our surroundings simply by taking photographs. In this paper, we propose to leverage these reconstruction techniques to automatically estimate the outdoor illumination conditions for each image in a SfM photo collection. We introduce a novel dataset of outdoor photo collections, where the ground truth lighting conditions are known at each image. We also present an inverse rendering approach that recovers a high dynamic range estimate of the lighting conditions for each low dynamic range input image. Our novel database is used to quantitatively evaluate the performance of our algorithm. Results show that physically plausible lighting estimates can faithfully be recovered, both in terms of light direction and intensity.
Osteogenesis Imperfecta (1992)

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the cause of coronavirus disease 2019 (COVID-19), emerged in China in December 2019 and quickly spread around the globe, killing more than 4 million people and causing a severe economic crisis. ...Read More
Haemophilia A: effects of inhibitory antibodies on factor VIII functional interactions and approaches to prevent their action (2002)

Factor VIII (FVIII) is an essential component of the intrinsic pathway of blood coagulation. Normal functioning of FVIII requires its interactions with other components of the coagulation cascade. In the circulation, it exists as a complex with von Willebrand factor (vWF). Upon activation by thrombin or activated factor X (FXa), activated FVIII (FVIIIa) functions as a cofactor for the serine protease factor IXa. Their complex assembled on the phospholipid surface activates FX to FXa, which consequently participates in formation of thrombin, the key protease of the coagulation cascade. Genetic deficiency in FVIII results in a coagulation disorder haemophilia A, which is treated by infusions of FVIII products. Approximately 25-30% of patients develop antibodies inhibiting FVIII activity (FVIII inhibitors). The major epitopes of inhibitors are located within the A2, C2 and A3 domains of the FVIII molecule. The inhibitory effects of antibodies are manifested at various stages of the FVIII functional pathway, including FVIII binding to vWF, activation of FVIII by thrombin, and FVIIIa incorporation into the Xase complex. We summarize the current knowledge of the FVIII sites involved in interaction with its physiological ligands and different classes of inhibitory antibodies and describe their inhibitory mechanisms. We outline the strategies aimed to overcome the effects of inhibitory antibodies such as development of human/porcine FVIII molecules, resistant to inhibitors. We also discuss approaches to modulate the antibody response, as well as efforts to develop a long-term immunotolerance to FVIII protein.
Seeing with Buddha's Eyes: Spring, Summer, Autumn, Winter...and Spring (2007)

Spring, Summer, Autumn, Winter… and Spring presents an alternative way of seeing in contemporary film by embodying vision through the eyes of the Buddha. Spring, Summer creates Buddhist subjectivity by keeping vision situated in either the characters or in one of the Buddhas. The narrative of the film concerns how a disciple must learn the way of the Buddha. The visual component of the film likewise does this. Through examining the construction of shots, one sees that the film also teaches the disciple and the audience how to see themselves, and each other, in the way of the Buddha.
Enzyme therapy in Gaucher disease type 1: dosage efficacy and adverse effects in 33 patients treated for 6 to 24 months (1993)

Gaucher disease is the most frequent lysosomal storage disease and the most prevalent genetic disease among the Ashkenazi Jews (q approximately 0.047). The disease results from inherited defects of acid beta-glucosidase and the accumulation of the substrate, glucosylceramide, in cells of monocyte/macrophage origin. The therapeutic response to macrophage-targeted (alpha-mannosyl-terminated) alglucerase (Ceredase, at 60 to 15 IU/kg every 2 weeks) was analyzed in 33 patients (age range, 2 to 63 years; 15 splenectomized) with extensive Gaucher disease over periods of 6 to 24 months. The efficacy of several different doses and dosage reductions was evaluated. In patients with anemia (n = 30) and/or thrombocytopenia (n = 19), hemoglobin levels and platelet counts increased by 0% to 178% and 15% to 155%, respectively, within 3 to 12 months. In patients with splenomegaly (n = 17) and/or hepatomegaly (n = 28), liver and spleen volumes decreased in 6 months from 7% to 64% and 8% to 84% by 12 months, respectively. Hematologic and visceral improvements were noted at any doses between 60 and 15 IU/kg every 2 weeks. Furthermore, these positive initial therapeutic responses were persistent throughout therapy, with doses reduced by 50%. Pulmonary Gaucher disease did not improve clinically in 3 patients. Unrelated cirrhotic (n = 2), cholestatic (n = 1), or renal disease (n = 1) did not influence the rate of patient improvement. Two of five patients who developed serum antibodies against alglucerase during the first 6 to 12 months of therapy had mild antibody reactions. This study shows similar regression of clinical Gaucher disease manifestations with enzyme therapy, using doses between 30 and 60 IU/kg every 2 weeks. Therapeutic efficacy was not diminished after 50% to 75% dose reductions or in the presence of anti-enzyme antibodies.
Detection of c-abl tyrosine kinase activity in vitro permits direct comparison of normal and altered abl gene products. (1985)

The v-abl transforming protein P160v-abl and the P210c-abl gene product of the translocated c-abl gene in Philadelphia chromosome-positive chronic myelogenous leukemia cells have tyrosine-specific protein kinase activity. Under similar assay conditions the normal c-abl gene products, murine P150c-abl and human P145c-abl, lacked detectable kinase activity. Reaction conditions were modified to identify conditions which would permit the detection of c-abl tyrosine kinase activity. It was found that the Formalin-fixed Staphylococcus aureus formerly used for immunoprecipitation inhibits in vitro abl kinase activity. In addition, the sodium dodecyl sulfate and deoxycholate detergents formerly used in the cell lysis buffer were found to decrease recovered abl kinase activity. The discovery of assay conditions for c-abl kinase activity now makes it possible to compare P150c-abl and P145c-abl kinase activity with the altered abl proteins P160v-abl and P210c-abl. Although all of the abl proteins have in vitro tyrosine kinase activity, they differ in the way they utilize themselves as substrates in vitro. Comparison of in vitro and in vivo tyrosine phosphorylation sites of the abl proteins suggests that they function differently in vivo. The development of c-abl kinase assay conditions should be useful in elucidating c-abl function.
TATA box and initiator functions in the accurate transcription of a plant minimal promoter in vitro. (1995)

The functional architecture of the proximal region of a rice phenylalanine ammonia-lyase (PAL) promoter was analyzed by transcription of PAL-beta-glucuronidase (GUS) templates by whole-cell extracts of rice cell suspension cultures. The promoter 5' truncated to position -35 was sufficient for accurate initiation of basal transcription. Substitution of the TATTTAA sequence between positions -35 and -28 with GCGGGTT or 2-bp substitutions to give TCGTTAA and TATGGAA inactivated the minimal promoter. Moreover, the function of the TATTTAA sequence was dependent on its position relative to the initiation site; hence, this element is an authentic TATA box essential for RNA polymerase II-dependent transcription. Substitutions in the TCCAAG initiator cis element (-3 to +3) at the -1 (C to A or G) and +1 (A to C or T) residues caused inaccurate initiation, whereas mutations at the other residues of this conserved element or sequence substitutions between the TATA box and initiator had little effect. TATA box and initiator functions were confirmed by analysis of the effects of promoter mutations on expression in stably transformed rice cell suspensions and plants. We concluded that the proximal region of the PAL promoter has a simple functional architecture involving a TATA box appropriately positioned upstream of the initiator. Transcription of derivatives of such minimal promoters by highly active cell extracts should allow molecular analysis of functional interactions between specific cis elements and cognate trans factors.
Recent Patents and Trends in Bioprinting (2011)

Bioprinting is the precise automated robotic layer-by-layer additive fabrication of biomaterials. The future of bioprinting technology depends on a number of essential elements, such as the development of innovative bioprinting apparatus and bioprinting methods. The application of innovative bioprinting technologies will have a tremendous impact on the advancement of tissue engineering and regenerative medicine. In this review we survey and report on a range of patents and some journal articles that describe the latest advancements in bioprinting as they relate to tissue engineering. Our analysis of the state of the art revealed that novel patents for bioprinting methods can be categorized into three areas; cell free scaffolds, cellularized scaffolds, and cell and tissue bioprinting. Our analysis also revealed a number of trends including the push to design the first clinical bioprinting apparatus and in vivo bioprinting robots, as well as methods to fabricate vascularized tissue and the first clinically approved cell free implants.
α-Methyl Functionalization of Electron-Poor Heterocycles1: Free Radical Chlorination (1984)

Chloration radicalaire par NCS de monomethyl- et dimethyl pyridines, -pyrazines et -bipyridyles-2,2', de methyl-2 quinoleine et de methyl-1 isoquinoleine
A fill-unit approach to multiple instruction issue (1994)

Multiple issue of instructions occurs in superscalar and VLIW machines. This paper investigates a third type of machine design, which combines the advantages of code compatibility as in superscalars and the absence of complex dependency-checking logic from the decoder as in VLIW. In this design, a stream of scalar instructions is executed by the hardware and is simultaneously compacted into VLIW-type instructions, which are then stored in a structure called a shadow cache. When a shadow cache line contains the instructions requested by the fetch unit, the scalar instruction stream is preempted and all operations in the shadow cache line are simultaneously issued and executed. The mechanism that compacts instructions is called a fill unit, and was first proposed for dynamically compacting microoperations into large executable units by Melvin, Shebanow, and Patt in 1988. We have extended their approach to directly handle data dependencies, delayed branches, and speculative execution (using branch prediction). This approach is evaluated using the MIPS architecture, and a six-functional-unit machine is found to be 52 to 108% faster than a single-issue processor for unrecompiled SPECint92 benchmarks.
Angiotensin-(1-7) and the Rat Aorta: Modulation by the Endothelium (1997)

Peptide metabolites of angiotensin I and II are active components of the renin-angiotensin system. One such peptide is angiotensin-(1-7), which has been shown to be present in various tissues and has properties distinct from those of angiotensin II. We examined the effects of angiotensin-(1-7) on endothelium-intact and denuded rat aorta. Second, we evaluated whether an interaction occurred between angiotensin-(1-7) and angiotensin peptides, as well as noradrenaline. Finally, we addressed whether the responses to angiotensin-(1-7) were mediated by an AT1 receptor. Angiotensin-(1-7) produced concentration-dependent relaxations of the rat aorta that were significantly greater in endothelium-intact preparations (81.1 +/- 18.9% and 29.6 +/- 2.9% for intact and denuded, respectively). Angiotensin-(1-7) inhibited responses generated to angiotensin I, II, III, and noradrenaline. In endothelium-denuded preparations, angiotensin-(1-7) produced a rightward shift of the concentration-effect curves to angiotensin II and noradrenaline. In addition, the inhibition against angiotensin I and II was significantly greater in endothelium-intact preparations [mean median inhibitory concentration (IC50) values for endothelium-intact preparations, 1.25 x 10(-9) M and 1.57 x 10(-9) M for angiotensin I and II, respectively; and for endothelium-denuded preparations, 1.77 x 10(-8) M and 1.17 x 10(-8) M for angiotensin I and II, respectively). Losartan did not affect relaxations in endothelium-intact preparations but caused a significant potentiation of the relaxation by angiotensin-(1-7) in denuded preparations. We conclude that angiotensin-(1-7) is a component of the renin-angiotensin system that acts to modulate the pressor effects of angiotensin II and noradrenaline.
Robust mining of time intervals with semi-interval partial order patterns (2010)

We present a new approach to mining patterns from symbolic interval data that extends previous approaches by allowing semi-intervals and partially ordered patterns. The mining algorithm combines and adapts efficient algorithms from sequential pattern and itemset mining for discovery of the new semi-interval patterns. The semi-interval patterns and semi-interval partial order patterns are more flexible than patterns over full intervals, and are empirically demonstrated to be more useful as features in classification settings. We performed an extensive empirical evaluation on seven real life interval databases totalling over 146k intervals from more than 400 classes demonstrating the flexibility and usefulness of the patterns.
Gemtuzumab ozogamicin: is there room for salvage? (2010)

To the editor:

On May 17, 2000, gemtuzumab ozogamicin received marketing approval from the US Food and Drug Administration (FDA) under accelerated approval regulations for the treatment of patients with CD33-positive acute myeloid leukemia (AML) in first relapse who are 60 years of age or older and
In vivo trafficking, persistence and efficacy of Lewis-Y chimeric antigen receptor T cells in patients with Lewis-Y positive acute myeloid leukaemia (P4354) (2013)

Abstract Second generation chimeric antigen receptor (CAR) T cells were used to treat patients with acute myeloid leukemia (AML) in a phase I clinical study. Autologous T cells were genetically modified to express a CAR which re-directed T cell effector function to the LeY tumor associated carbohydrate antigen on AML cells. CAR-T cell therapy safety, AML disease response, and CAR-T cell trafficking and persistence post-infusion were investigated. Five patients received GMP grade CAR-T cells (LeY-T). Post infusion, no patients experienced grade 3 or 4 toxicities. Patient AML responses to LeY-T cell infusion included a transient cytogenetic response and a reduction in peripheral blood leukemic blast count. In all patients, LeY-T cells trafficked thru peripheral blood, and persisted in the bone marrow. In one patient, leukemia cutis was associated with trafficking of the LeY-T cells to the skin at sites of AML blast infiltration. Despite LeY-T cells being present at the disease site, relapse with LeY-expressing AML blasts occurred in all patients (range 29 days to 23 months) post-infusion. Further studies indicated LeY-T cell CAR expression was downregulated post-infusion in vivo, this was also observed post-LeY antigen exposure and long term culture in vitro. This study provides important safety and feasibility data to support the application of CAR-T cell therapy to treat AML. Furthermore, we provide a potential mechanism for tumor escape from LeY-T cell surveillance in vivo.