gebhart/patrepeval huggingface dataset:
Enzymatic breakage of the cohesive end site of phage lambda DNA: terminase (ter) reaction. (1978)

An in vitro system is described for measuring the endonucleolytic conversion of the phage lambda cohesive end sites in concatemeric DNA to the cohesive chromosomal ends of the mature molecule. This enzymic process, known as the ter reaction, is catalyzed by purified lambda A gene protein. The reaction is markedly stimulated by ATP, Mg2+, spermidine, and one or more uncharacterized factors present in extracts of uninfected Escherichia coli cells. In vitro, the ter reaction proceeds in the absence of proheads under conditions that are similar to those previously found necessary for the formation of a DNA-A gene protein intermediate for the initiation of packaging.
Phosphoramidates as Potent Prodrugs of anti-HIV Nucleotides: Studies in the Amino Region (1996)

Novel phosphoramidate derivatives of the anti-HIV nucleoside analogues AZT and d4T have been prepared by phosphorochloridate chemistry. These materials are designed to act as labile membrane-soluble prodrugs of the bio-active free nucleotides. All compounds were fully characterised by a range of methods and were subjected to evaluation in vitro of their anti-HIV efficacy. A notable feature of the current study was that any attempt to replace the amino acid moiety of the phosphoramidate with a simple amine lead to a marked, virtually total loss of activity. Such simple phenyl alkylamino phosphate derivatives of either d4T or AZT inhibit HIV replication at cytotoxic concentrations and have no detectable antiviral selectivity. This clearly highlights the vital role played by the amino acid in the antiviral efficacy of the blocked phosphoramidates.
CPDI: Cross-power-domain interface circuit design in monolithic 3D technology (2013)

Optimizing energy consumption for electronic systems has been an important design focus. Multi-power domain design is widely used for low power and high performance applications. Data transfer between power domains needs a cross power domain interface (CPDI). The existing level-conversion flip-flop (LCFF) structures all need dual power rails, which leads to large area and performance overhead. In this paper, we propose a CPDI circuit utilizing monolithic 3D technology. This interface functions as a flip-flop and provides reliable data conversion from one power domain to another. Our design separates power rails in each tier, substantially reducing physical design complexity and area penalty. The design is implemented in a 45nm low power technology. It shows 20%-35% smaller clock to Q and 30% energy saving comparing with existing LCFF designs. The proposed design also shows better robustness with ±10% voltage variation.
First-principles calculation of band offsets, optical bowings, and defects in CdS, CdSe, CdTe, and their alloys (2000)

Using first principles band structure theory we have calculated (i) the alloy bowing coefficients, (ii) the alloy mixing enthalpies, and (iii) the interfacial valence band offsets for three Cd-based (CdS, CdSe, CdTe) compounds. We have also calculated defect formation energies and defect transition energy levels of Cd vacancy VCd and CuCd substitutional defect in CdS and CdTe, as well as the isovalent defect TeS in CdS. The calculated results are compared with available experimental data.
Ultrasonic neuromodulation (2016)

Ultrasonic waves can be non-invasively steered and focused into mm-scale regions across the human body and brain, and their application in generating controlled artificial modulation of neuronal activity could therefore potentially have profound implications for neural science and engineering. Ultrasonic neuro-modulation phenomena were experimentally observed and studied for nearly a century, with recent discoveries on direct neural excitation and suppression sparking a new wave of investigations in models ranging from rodents to humans. In this paper we review the physics, engineering and scientific aspects of ultrasonic fields, their control in both space and time, and their effect on neuronal activity, including a survey of both the field's foundational history and of recent findings. We describe key constraints encountered in this field, as well as key engineering systems developed to surmount them. In closing, the state of the art is discussed, with an emphasis on emerging research and clinical directions.
Simultaneous in situ measurement of CO, H _ 2 O, and gas temperatures in a full-sized coal-fired power plant by near-infrared diode lasers (2003)

We present what is to our knowledge the first near-infrared diode-laser-based absorption spectrometer that is suitable for simultaneous in situ measurement of carbon monoxide, water vapor, and temperature in the combustion chamber (20-m diameter, 13-m path length) of a 600-MW lignite-fired power plant. A fiber-coupled distributed-feedback diode-laser module at 1.56 microm served for CO detection, and a Fabry-Perot diode laser at 813 nm was used to determine H2O concentrations and temperature from multiline water spectra. Despite severe light losses (transmission, <10(-8)) and strong background radiation we achieved a resolution of 1.9 x 10(-4) (1sigma) fractional absorption, equivalent to 200 parts in 10(6) by volume of CO (at 1450 K, 10(5) Pa) with 30-s averaging time.
Low Dose Dehydroepiandrosterone Affects Behavior in Hypopituitary Androgen-Deficient Women: A Placebo-Controlled Trial (2002)

Thirty-eight women, aged 25-65 yr, with androgen deficiency due to hypopituitarism were treated with oral dehydroepiandrosterone (DHEA; 30 mg/d if <45 yr of age and 20 mg if > or =45 yr of age) for 6 months in a randomized, placebo-controlled, double blind study, followed by a 6-month open treatment period. The administration of DHEA raised the serum levels of DHEAS to normal age-related reference ranges and increased androstenedione and T to subnormal levels. Androgen effects on skin and/or pubic and/or axillary hair were observed in 84% (32 of 38) of the women after all received 6 months of DHEA treatment. No such effects were observed after the placebo treatment. These effects after 6 months were correlated with the serum levels of DHEAS (r = 0.37; P = 0.03), androstenedione (r = 0.42; P = 0.01), and T (r = 0.37; P = 0.03). The percentages of partners who reported improved alertness, stamina, and initiative by their spouses were 70%, 64%, and 55%, respectively, in the DHEA group and 11%, 6%, and 11%, respectively, in the placebo group (P < 0.05). According to the partners, sexual relations tended to improve compared with placebo (P = 0.06). After 6 months of treatment, increased sexual interest or activity was reported by 50% of the women taking 30 mg DHEA, by none taking 20 mg DHEA, and by two women taking placebo (P = NS). Compared with levels after placebo administration, high density lipoprotein cholesterol and apolipoprotein A-1 levels decreased after DHEA. Serum concentrations of IGF-I, serum markers of bone metabolism, and bone density did not change. In conclusion, oral administration of a low dose of DHEA to adult hypopituitary women induced androgen effects on skin and axillary and pubic hair as well as changes in behavior, with only minor effects on metabolism.
Fish functional design and swimming performance (2004)

Classifications of fish swimming are reviewed as a prelude to discussing functional design and performance in an ecological context. Webb (1984 a , 1998 ) classified fishes based on body shape and locomotor mode into three basic categories: body and caudal fin (BCF) periodic, BCF transient (fast‐starts, turns) and median and paired fin (MPF) swimmers. Swimming performance and functional design is discussed for each of these categories. Webb hypothesized that specialization in any given category would limit performance in any other. For example, routine MPF swimmers should be penalized in BCF transient (fast‐start propulsion). Recent studies offer much support for Webb's construct but also suggest some necessary amendments. In particular, design and performance compromises for different swimming modes are associated with fish that employ the same propulsor for more than one task (coupled, e.g . the same propulsor for routine steady swimming and fast‐starts). For example, pike (BCF transient specialist) achieve better acceleration performance than trout (generalist). Pike steady (BCF periodic) performance, however, is inferior to that of trout. Fish that employ different propulsors for different tasks (decoupled, e.g . MPF propulsion for low‐speed routine swimming and BCF motions for fast‐starts) do not show serious performance compromises. For example, certain MPF low‐speed swimmers show comparable fast‐start performance to BCF forms. Arguably, the evolution of decoupled locomotor systems was a major factor underlying the adaptive radiation of teleosts. Low‐speed routine propulsion releases MPF swimmers from the morphological constraints imposed by streamlining allowing for a high degree of variability in form. This contrasts with BCF periodic swimming specialists where representatives of four vertebrate classes show evolutionary convergence on a single, optimal ‘thunniform’ design. However, recent experimental studies on the comparative performance of carangiform and thunniform swimmers contradict some of the predictions of hydromechanical models. This is addressed in regard to the swimming performance, energetics and muscle physiology of tuna. The concept of gait is reviewed in the context of coupled and decoupled locomotor systems. Biomimetic approaches to the development of Autonomous Underwater Vehicles have given a new context and impetus to research and this is discussed in relation to current views of fish functional design and swimming performance. Suggestions are made for possible future research directions.
Three‐Dimensional Biomimetic Patterning in Hydrogels to Guide Cellular Organization (2012)

An image-guided micropatterning method is demonstrated for generating biomimetic hydrogel scaffolds with two-photon laser scanning photolithography. This process utilizes computational methods to directly translate three-dimensional cytoarchitectural features from labeled tissues into material structures. We use this method to pattern hydrogels that guide cellular organization by structurally and biochemically recapitulating complex vascular niche microenvironments with high pattern fidelity at the microscale. Detailed facts of importance to specialist readers are published as ”Supporting Information”. Such documents are peer-reviewed, but not copy-edited or typeset. They are made available as submitted by the authors. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
Noninvasive detection of hypoxic myocardium using fluorine-18-fluoromisonidazole and positron emission tomography. (1992)

Fluoromisonidazole (FMISO) is metabolically trapped in viable cells as a function of reduced cellular pO2. Therefore [18F]-FMISO is potentially useful for evaluating patients with hypoxic but viable myocardium. The goal of this study was to investigate [18F]FMISO uptake in ischemic myocardium non-invasively using positron emission tomography (PET). Studies were performed in 10 open-chest dogs subjected to either complete (Group 1, n = 5) or partial (Group 2, n = 5) occlusion of the left anterior descending coronary artery. The tracer was administered by intravenous bolus following the onset of ischemia and serial PET images were acquired for the next 4 hr. In Group 1, viability was assessed using histochemical staining (nitroblue tetrazolium, NBT) and 99mTc-pyrophosphate (Tc-PYP). In Group 2, viability was assessed using measurements of regional wall motion, histochemical staining and histology (two animals). In each study, PET images obtained at times between 2 and 4 hr postinjection showed specific enhancement of tracer activity in the distal anterior wall and apex of the left ventricle. At 4 hr, the tissue-to-blood pool count ratio was significantly higher in ischemic regions; 1.8 +/- 0.4 for Group 1 and 1.6 +/- 0.2 for Group 2 versus 1.0 +/- 0.1 in nonischemic regions. Postmortem tissue sampling of Group 1 hearts showed significant FMISO retention in samples without evidence for infarction, either by NBT or Tc-PYP deposition, as well as in more severely ischemic regions. In Group 2 animals, FMISO was retained in myocardial regions with reduced blood flow (microspheres), which exhibited improved contraction following reperfusion. We conclude that PET imaging of [18F]FMISO is a promising technique for the noninvasive identification of viable hypoxic myocardium.
Rat PXR Reporter-Gene Activity Correlates with the Induction of CYP3A in Rat Precision-Cut Liver Slices (2005)

Recent studies have suggested that both constitutive androstane receptor (CAR) and pregnane X-receptor (PXR) are involved in the induction of rat liver microsomal cytochrome P-450 (CYP) 2B and 3A through a mechanism called cross-talk. In this study we intend to determine if a PXR-reporter gene assay could be used for the prediction of CYP3A and/or CYP2B induction in rats. The induction of rat CYP2B and CYP3A by nineteen structurally diverse compounds was evaluated by using rat precision-cut liver slices and a rat PXR reporter-gene system. Induction of CYP2B and CYP3A mRNAs in rat liver slices was quantified by real-time polymerase chain reaction. Rat PXR activation was measured by induction of luciferase activity in rat PXR reporter-gene system. Linear regression analysis of the fold of induction of mRNA in liver slices and the fold of luciferase activity in rat PXR reporter-gene system shows that a reasonable correlation (r2 = 0.6) exists between the CYP3A induction and the rat PXR activation. A much lower correlation was observed between CYP2B induction and the rat PXR activation (r2 = 0.1). The results from this study suggest that the PXR may play a major role in the induction of rat CYP3A, but not CYP2B. Therefore, the PXR-reporter gene assay may be useful in a high-throughput screening to predict CYP3A induction in rats.
CAMBIOS NUTRICIONALES EN EL PROCESO DE ENVEJECIMIENTO. (2003)

En la actualidad no cabe duda de la importancia de la nutrición como indicador de salud, por tanto, conocer el estado nutricional de la población anciana permite valorar de forma indirecta su estado de salud, pero también detectar y tratar de forma precoz situaciones de riesgo de malnutrición. Se sabe que las necesidades nutricionales del individuo varían con la edad, aunque aun no ha sido determinado cuál sería el aporte nutricional óptimo para la población anciana. El objetivo de este trabajo es conocer los cambios que se producen en la nutrición durante el proceso de envejecimiento. La metodología utilizada ha sido la revisión bibliográfica. Se analizan los cambios en la composición corporal, en los diferentes órganos y los factores de riesgo de desnutrición, planteándose finalmente distintos tipos de intervención nutricional, concluyendo que el envejecimiento normal no es, por sí mismo, una causa de desnutrición en la población anciana sana.
Cantharidin-binding protein: identification as protein phosphatase 2A. (1992)

The toxic effects of cantharidin from blister beetles and its analogs, including the herbicide endothall, are attributable to their high affinity and specificity for a cantharidin-binding protein (CBP). An ammonium sulfate precipitate of mouse liver cytosol was purified by five chromatographic steps to isolate CBP in 14% yield and > 99% purity as monitored by [3H]cantharidin-binding activity. The purification factor of 2230-fold corresponds to a CBP content of 0.045% of the liver cytosolic protein. CBP is a heterodimer consisting of a 61-kDa alpha subunit and a 39-kDa beta subunit. Amino acid sequences of four peptides from CBP-alpha and three peptides from CBP-beta are identical with deduced amino acid sequences for the A alpha regulatory and C beta catalytic subunits, respectively, of protein phosphatase 2A (PP2A). This assignment of CBP as PP2A-AC from structural evidence is supported by biochemical studies with selective substrates and inhibitors. CBP dephosphorylation of phosphorylase alpha is sensitive not only to okadaic acid, as with PP2A, but also to cantharidin and its analogs, consistent with their potency in blocking the radioligand binding site of CBP. Okadaic acid is a potent inhibitor of [3H]cantharidin binding to CBP. PP2A is present in many mammalian tissues and in plants and is involved in regulatory phosphorylation-dephosphorylation events which modulate multiple cellular functions. Inhibition of PP2A activity may account for the diverse effects and toxicity of cantharidin and its analogs, including the herbicide endothall, in mammals and possibly plants.
The 106b∼25 microRNA cluster is essential for neovascularization after hindlimb ischaemia in mice (2013)

These results show that the miR-106b∼25 cluster regulates post-ischaemic neovascularization in mice, and that it does so in part by regulating the function of angiogenic bone marrow-derived stromal cells and of endothelial cells.
Involvement of the cohesin protein, Smc1, in Atm-dependent and independent responses to DNA damage (2002)

Structural maintenance of chromosomes (SMC) proteins play important roles in sister chromatid cohesion, chromosome condensation, sex-chromosome dosage compensation, and DNA recombination and repair. Protein complexes containing heterodimers of the Smc1 and Smc3 proteins have been implicated specifically in both sister chromatid cohesion and DNA recombination. Here, we show that the protein kinase, Atm, which belongs to a family of phosphatidylinositol 3-kinases that regulate cell cycle checkpoints and DNA recombination and repair, phosphorylates Smc1 protein after ionizing irradiation. Atm phosphorylates Smc1 on serines 957 and 966 in vitro and in vivo, and expression of an Smc1 protein mutated at these phosphorylation sites abrogates the ionizing irradiation-induced S phase cell cycle checkpoint. Optimal phosphorylation of these sites in Smc1 after ionizing irradiation also requires the presence of the Atm substrates Nbs1 and Brca1. These same sites in Smc1 are phosphorylated after treatment with UV irradiation or hydroxyurea in an Atm-independent manner, thus demonstrating that another kinase must be involved in responses to these cellular stresses. Yeast containing hypomorphic mutations in SMC1 and human cells overexpressing Smc1 mutated at both of these phosphorylation sites exhibit decreased survival following ionizing irradiation. These results demonstrate that Smc1 participates in cellular responses to DNA damage and link Smc1 to the Atm signal transduction pathway.
Error repair in human handwriting: an intelligent user interface for automatic online handwriting recognition (2002)

Since both users and recognition algorithms make mistakes, it is desirable for the user interface of a handwriting recognition system to have mechanisms recovering from errors. We address the problem of error repair in online handwriting recognition. First, we perform a user study on error occurrences and corresponding repair patterns in human handwriting. Based on a data analysis, we have identified typical types of errors and repair patterns. We then propose methods to deal with error repair in an online handwriting system. We have developed a prototype system to demonstrate and evaluate the proposed error handling mechanisms. The system extends NPen/sup ++/, an online handwriting recognition system developed in our lab, by providing error repair abilities to users in addition to its high recognition rate. The experimental results indicate that the error handling mechanisms can significantly improve the system performance in case of the data containing error repair.
OBSERVATIONS ON THE CARRLAGE OF CANDIDA ALBIANS IN MAN (1969)

Journal Article OBSERVATIONS ON THE CARRLAGE OF CANDIDA ALBIANS IN MAN Get access A. J. E. BARLOW, A. J. E. BARLOW Department of Dermatology Royal Infirmary, Huddersfield (Dr. Bra$$) and Department of Biochemistry. University of Leeds (Dr. Cha$$ray) Search for other works by this author on: Oxford Academic Google Scholar F. W. CHATTAWAY F. W. CHATTAWAY Department of Dermatology Royal Infirmary, Huddersfield (Dr. Bra$$) and Department of Biochemistry. University of Leeds (Dr. Cha$$ray) Search for other works by this author on: Oxford Academic Google Scholar British Journal of Dermatology, Volume 81, Issue 2, 1 February 1969, Pages 103–106, https://doi.org/10.1111/j.1365-2133.1969.tb15988.x Published: 01 February 1969 Article history Accepted: 14 July 1968 Published: 01 February 1969
Avaliação do segmento venoso femoropoplíteo pela ultrassonografia Doppler em pacientes com úlcera varicosa (2012)

CONTEXTO: Como a úlcera é uma grave complicação da insuficiência venosa crônica, é necessário o conhecimento amplo de sua fisiopatologia. A ultrassonografia Doppler venosa é o exame complementar mais adequado, que possibilita o estudo do sistema venoso superficial e profundo, sua anatomia e fisiologia. Trabalhos recentes valorizam o refluxo em Veia Poplítea como importante fator para o desenvolvimento deste quadro clínico. OBJETIVOS: Avaliar o refluxo em segmento venoso femoropoplíteo em pacientes com úlcera varicosa. TIPO DE ESTUDO: Estudo de prevalência. MÉTODOS: Cento e quatro pacientes apresentando 118 membros inferiores com úlcera varicosa. Procedimentos: exame de ultrassonografia Doppler venosa do membro acometido, observado o refluxo no segmento venoso femoropoplíteo e diâmetro da Veia Poplítea. Variáveis: Primária: refluxo no segmento venoso femoropoplíteo. Secundária: diâmetro da Veia Poplítea. RESULTADOS: A presença de refluxo no segmento venoso femoropoplíteo foi observada em 56 (47,45%) dos 118 membros com úlcera varicosa, examinados em 104 pacientes. O diâmetro médio da Veia Poplítea foi de 1,14 cm, sendo o diâmetro médio normal da população 0,6 cm. CONCLUSÃO: O refluxo venoso no segmento venoso femoropoplíteo é um importante fator na avaliação do prognóstico destes pacientes, o aumento de diâmetro da Veia Poplítea reflete a magnitude da insuficiência venosa.
ANLN Plays a Critical Role in Human Lung Carcinogenesis through the Activation of RHOA and by Involvement in the Phosphoinositide 3-Kinase/AKT Pathway (2005)

Gene expression profile analysis of non-small cell lung cancers (NSCLC) and subsequent functional analyses revealed that human ANLN, a homologue of anillin, an actin-binding protein in Drosophila, was transactivated in lung cancer cells and seemed to play a significant role in pulmonary carcinogenesis. Induction of small interfering RNAs against ANLN in NSCLC cells suppressed its expression and resulted in growth suppression; moreover, treatment with small interfering RNA yielded cells with larger morphology and multiple nuclei, which subsequently died. On the other hand, induction of exogenous expression of ANLN enhanced the migrating ability of mammalian cells by interacting with RHOA, a small guanosine triphosphatase, and inducing actin stress fibers. Interestingly, inhibition of phosphoinositide 3-kinase/AKT activity in NSCLC cells decreased the stability of ANLN and caused a reduction of the nuclear ANLN level. Immunohistochemical staining of nuclear ANLN on lung cancer tissue microarrays was associated with the poor survival of NSCLC patients, indicating that this molecule might serve as a prognostic indicator. Our data imply that up-regulation of ANLN is a common feature of the carcinogenetic process in lung tissue, and suggests that selective suppression of ANLN could be a promising approach for developing a new strategy to treat lung cancers.