gebhart/patrepeval huggingface dataset:
Endothelial interactions of neutrophils under flow in chronic obstructive pulmonary disease (2005)

It is generally accepted that the neutrophil is central to the pathogenesis of chronic obstructive pulmonary disease (COPD). Enhanced endothelial interactions of this cell may contribute to the susceptibility of smokers who develop the disease; however, these interactions have not previously been studied in COPD. The aim of the current study was to determine whether enhanced endothelial interactions of neutrophils from smokers are a predisposing factor for the development of COPD. Endothelial interactions under flow and adhesion molecule expression of peripheral blood neutrophils were compared between seven never-smokers (NS), seven healthy smokers (HS), 11 COPD patients with severe alpha1-antitrypsin deficiency (PiZ) and neutrophils from 11 COPD patients without the deficiency (PiM). Total adhesive and migratory responses (per mm2 endothelium per 10(6) neutrophils) were significantly greater in the PiM group (mean+/-se 704.2+/-57.9 versus 509.3+/-48.8 in the PiZ group, 499.3+/-40.1 in the HS and 491.2+/-33.7 in the NS). This corresponded with increased macrophage antigen-1 (CD11b) expression on stimulated neutrophils in the PiM group compared with the PiZ group (mean+/-se relative fluorescence intensity 1.4+/-0.1 versus 1.1+/-0.1). In conclusion, the enhanced endothelial interaction of neutrophils from smokers who have developed chronic obstructive pulmonary disease in the presence of normal levels of alpha1-antitrypsin deficiency, but not in those with severe alpha(1)-antitrypsin deficiency, suggests that this is a predisposing factor for the development of the disease, and upregulation of macrophage antigen-1 may be responsible.
Inhibition of allergic and non‐allergic histamine secretion from rat peritoneal mast cells by calcium antagonists (1984)

Bepridil, TMB-8 (8-(diethylamino)octyl 3,4,5-trimethoxybenzoate hydrochloride), diltiazem, verapamil and nifedipine exerted concentration-dependent inhibition of antigen and calcium ionophore A23187-induced histamine release from rat peritoneal mast cells. The inhibitory effects of verapamil and bepridil against calcium ionophore A23187-induced histamine secretion were antagonized by increased Ca2+ concentrations in the extracellular medium. These observations suggest that both agents act by interfering with the influx of Ca2+ into the mast cells. The inhibitory activities of five different Ca2+ channel blockers on allergic and non-allergic histamine secretion from rat peritoneal mast cells varied considerably depending upon the nature of the secretagogue as well as concentration and type of Ca2+-antagonist examined.
Heterogeneity and variation among Neisseria meningitidis lipopolysaccharides (1983)

Eight immunotype lipopolysaccharides (LPSs) of Neisseria meningitidis were prepared by the phenol-water procedure and characterized by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and sugar analyses. By SDS-PAGE and a highly sensitive silver strain. N. meningitidis LPSs from cells grown in tryptic soy broth were shown to contain one or two predominant components and a few minor, somewhat higher-molecular-weight components. The molecular sizes of the two predominant components were approximately the same as those of two E. coli rough-type LPSs, one with a complete core and the other with an incomplete core. The molecular weight of the major LPS component varied somewhat among different immunotypes but was estimated to be in the range of 4,200 to 5,000. By sugar analyses, the eight immunotype LPSs were different in their monosaccharide compositions. All contained glucose, galactose, heptose, glucosamine, and 2-keto-3-deoxyoctonate, but in different molar ratios. The growth of N. meningitidis in tryptic soy broth under different levels of aeration resulted in a change in the two major LPS components seen on the SDS-PAGE gel. High aeration increased the amount of the smaller component, whereas low aeration increased the amount of the larger component. Sugar analyses of LPSs from high and low aeration indicated that the larger LPS component contained more galactose residues per molecule. Use of different media for cell growth may also result in small, but noticeable, variations in the LPS components and in the galactose content of the LPS. The observed heterogeneity of N. meningitidis LPS may explain why many strains of N. meningitidis appear to possess more than one immunotype.
Conductance-Matrix Symmetries of a Three-Terminal Hybrid Device (2020)

We present conductance-matrix measurements of a three-terminal superconductor-semiconductor hybrid device consisting of two normal leads and one superconducting lead. Using a symmetry decomposition of the conductance, we find that antisymmetric components of pairs of local and nonlocal conductances qualitatively match at energies below the superconducting gap, and we compare this finding with symmetry relations based on a noninteracting scattering matrix approach. Further, the local charge character of Andreev bound states is extracted from the symmetry-decomposed conductance data and is found to be similar at both ends of the device and tunable with gate voltage. Finally, we measure the conductance matrix as a function of magnetic field and identify correlated splittings in low-energy features, demonstrating how conductance-matrix measurements can complement traditional single-probe measurements in the search for Majorana zero modes.
The surface/bulk micromachining (SBM) process: a new method for fabricating released MEMS in single crystal silicon (1999)

This paper presents the surface/bulk micromachining (SBM) process to allow fabricating released microelectromechanical systems using bulk silicon. The process starts with a [111]-oriented silicon wafer. The structural patterns are defined using the reactive ion etching technique used in surface micromachining. Then the patterns, as well as sidewalls, are passivated with an oxide film, and bare silicon is exposed at desired areas. The exposed bare silicon is further reactive ion etched, which defines sacrificial gap dimensions. The final release is accomplished by undercutting the exposed bulk silicon sidewalls in aqueous alkaline etchants. Because {111} planes are used as etch stops, very clean structural surfaces can be obtained. Using the SBM process, 5-, 10-, and 100-/spl mu/m-thick arbitrarily-shaped single crystal silicon structures, including comb-drive resonators, at 5-, 30-, and 100-/spl mu/m sacrificial gaps, respectively, are fabricated. An electrostatic actuation method using p-n junction isolation is also developed in this paper, and it is applied to actuate comb-drive resonators. The leakage current and junction capacitance of the reversed-biased p-n junction diodes are also found to be sufficiently small for sensor applications. The developed SBM process is a plausible alternative to the existing micromachining methods in fabricating microsensors and microactuators, with the advantage of using single crystal silicon.
Biomolecular Effects of Cold Plasma Exposure (2013)

The effects of cold plasma exposure on Deinococcus radiodurans, plasmid DNA and model proteins were assessed using microbiological, spectrometric and biochemical techniques. Exposure of D. radiodurans, an extremely radiation resistant microbe, to O2 plasma (less than or equal to 25 W, approx. 45 mTorr, 90 min) yielded a approx. 99.999 % sterilization and the sterilization rate was increased approx. 10-fold at 100 W and 500 mTorr. AFM images shows that the exposed cells are significantly deformed and possess 50-70 nm concavities. IR analysis indicates the chemical degradation of lipids, proteins and carotenoids of the cell wall and membrane. Intracellular damage was indicated by major absorbance loss at 1245, 1651 and 1538/cm corresponding to degradation of DNA and proteins, respectively. Biochemical experiments demonstrate that plasmas induce strand scissions and crosslinking of plasmid DNA, and reduction of enzyme activity; the degradation is power dependent with total sample loss occurring in 60 s at 200 W and 500 mTorr. Emission spectroscopy shows that D. radiodurans is volatilized into CO2, CO, N2 and H2O confirming the removal of biological matter from contaminated surfaces. The O2 plasma impacts several cellular components predominantly through chemical degradation by atomic oxygen. A CO2, plasma, however, was not effective at degrading D. radiodurans, revealing the importance of plasma composition, which has implications for planetary protection and the contamination of Mars.
General structure of immunoglobulins (1984)

Three groups of antibodies can be detected in serum by ultracentrifugation: (a) proteins of molecular weight approximately 150000 and a sedimentation coefficient of 7S, (b) proteins of molecular weight approximately 300000 (9–11S) and (c) proteins of molecular weight approximately 900000 (19S). The 7S is the major group and consists predominantly of IgG. This immunoglobulin accounts for about 70% of the total serum immunoglobulins in human serum.
Hypochlorite-Modified Adenine Nucleotides: Structure, Spin-Trapping, and Formation by Activated Guinea Pig Polymorphonuclear Leukocytes (1990)

Adenosine and its nucleotides react with hypochlorite to form unstable products that have been identified as the N6 chloramine derivatives. These chloramines spontaneously oligomerize, form stable adducts with proteins and nucleic acids, and are converted with loss of chlorine to the original nucleoside or nucleotide by reducing agents. The chloramines are associated with a free radical, and the spin-trapping of adenosine chloramine with 5,5-dimethyl-1-pyrroline-N-oxide (DMPO) yielded a mixture of unstable nitroxyl adducts that corresponded to nitrogen-centered radicals from the parent nucleoside. When activated guinea pig polymorphonuclear leukocytes were stimulated with phorbol myristate acetate to produce hypochlorite, they actively incorporated [14C]adenosine into acid-insoluble products by a process that was dependent on oxygen and inhibited by azide and thiols. These findings suggest that adenine nucleotide chloramines are generated by activated phagocytic cells and form ligands with proteins and nucleic acids as observed in model systems. The results imply that nucleotide chloramines are among the cytotoxic and possibly mutagenic factors that are associated with the inflammatory process.
Rhizome and Herbage Production of Endophyte‐Removed Tall Fescue Clones and Populations (1990)

Abstract Grass endophytes alter the morphology and growth of their hosts. The endophyte ( Acremonium coenophialum Morgan‐Jones and Gams) benefits the tall fescue ( Festuca arundinacea Schreb.) plant by increasing dry matter production and drought tolerance. Rhizomatous tall fescue was also found to be more persistent and competitive in mixed swards, but the effect of endophyte infection on rhizome expression is unknown. This study was conducted to determine the effect of endophyte removal on rhizome and herbage production of clones and populations of tall fescue. Six clones and four populations (‘Kentucky 31,’ Georgia‐5, Georgia‐Jesup, and Georgia‐Jesup Improved), infected with A. coenophialum and the same clones and populations with the endophyte removed were evaluated for rhizome production, tillering, and herbage and root yield after 12 wk of growth in the greenhouse. No differences in rhizome production were detected between either infected and noninfected clones or populations. However, endophyte infection increased tillering, herbage growth and root growth by 12, 18, and 25%, respectively. A significant (P &lt; 0.01) interaction was detected between endophyte infection and populations for herbage growth with infection increasing herbage growth in Kentucky 31 but decreasing growth in Georgia‐Jesup. Interaction between populations and endophyte infection suggest that the data obtained should not be extrapolated to other germplasm or environmental conditions.
Prevention of Meningococcal Disease by Group C Polysaccharide Vaccine (1970)

Group C meningococcal polysaccharide vaccine was administered to 13,763 Army recruit volunteers at five basic training centers. These men represented 20 per cent of 68,072 recruits under observation. Only minor local erythema occurred; no systemic reactions to the vaccine developed in these men. Thirty-eight bacteriologically proved cases of Group C meningococcal disease developed in the nonimmunized men; only one such case occurred in a vaccinated recruit. The 87 per cent reduction in Group C disease was statistically significant. Group B meningococci caused illness in four immunized and three control recruits, indicating the group specificity of the vaccine. Group C carrier acquisitions among vaccinated persons were markedly reduced.
Characterization of the cDNA and Gene Encoding Human PDE3B, the cGIP1 Isoform of the Human Cyclic GMP-Inhibited Cyclic Nucleotide Phosphodiesterase Family (1996)

Two distinct PDE3 [cyclic GMP-inhibited cyclic nucleotide phosphodiesterase (cGI PDE)] isoforms, cGIP1 and cGIP2, have been identified. Here we report cloning of the cDNA and gene encoding human (H)cGIP1 (classified as PDE3B). The cDNA encodes a protein of 1112 amino acids (approximately 123 kDa). Northern blots indicate that its mRNA is expressed in several adipose tissue depots. The human PDE3B gene is composed of 16 exons spanning more than 114 kb and was localized to chromosome 11p15 by in situ hybridization. Exon/intron boundaries were determined, and genetic polymorphism, confirmed by single-strand conformational polymorphism of DNA from 25 healthy subjects, was demonstrated in exon 4 at nucleotide 1389 (A/G). Two polymorphic dinucleotide repeat sequences were identified in introns 5 and 12.
Human TH1 and TH2 Subsets: Regulation of Differentiation and Role in Protection and Immunopathology (1992)

A large body of evidence has accumulated suggesting the existence of human TH1 and TH2 subsets, reminiscent of those described for mouse T cells. Human TH1 cells develop in response to intracellular bacteria and viruses, do not provide help for IgE synthesis and are cytolytic. Human TH2 cells develop in response to allergens and helminth components, provide help for IgM, IgG, IgA, and IgE synthesis and lack cytolytic potential. The cytokine profile of 'natural' immunity (high IFN-gamma and no IL-4 production) evoked by intracellular bacteria and viruses that activate both macrophages and NK cells, probably determines the phenotype of the subsequent specific TH1 response. Absence or low concentration of IFN-gamma and early production of IL-4 by non-T cells or by T cells themselves, that occur in response to allergens and helminth components, probably favor the development of TH2 cells. TH1 and TH2 cells play different roles not only in protection against exogenous offending agents, but also in immunopathology. TH1 cells are involved in contact dermatitis, organ-specific autoimmunity and allograft rejection. TH2 cells are responsible for the initiation of the allergic cascade.
Imaging of tumor necroses using full-frame optical coherence imaging (2003)

Holographic optical coherence imaging (OCI) has been used to acquire depth resolved images in tumor spheroids. OCI is a coherence-domain imaging technique that uses dynamic holography as the coherence gate. The technique is full-frame (<i>en face</i>) and background free, allowing real-time acquisition to a digital camera without motional reconstruction artifacts. We describe the method of operation of the holographic OCI on highly scattering specimens of tumor spheroids. Because of the sub-resolution structure in the sample, the holograms consist primarily of speckle fields. We present two kinds of volumetric data acquisition. One is uses fly-throughs with a stepping reference delay. Another is static holograms at a fixed reference delay with the coherence gate inside the tumor spheroids. At a fixed reference delay, the holograms consist of time-dependent speckle patterns. The method can be used to study cell motility inside tumor spheroids when metabolic or cross-linking poisons are delivered to the specimens.
Sp1 and TAFII130 Transcriptional Activity Disrupted in Early Huntington's Disease (2002)

Huntington's disease (HD) is an inherited neurodegenerative disease caused by expansion of a polyglutamine tract in the huntingtin protein. Transcriptional dysregulation has been implicated in HD pathogenesis. Here, we report that huntingtin interacts with the transcriptional activator Sp1 and coactivator TAFII130. Coexpression of Sp1 and TAFII130 in cultured striatal cells from wild-type and HD transgenic mice reverses the transcriptional inhibition of the dopamine D2 receptor gene caused by mutant huntingtin, as well as protects neurons from huntingtin-induced cellular toxicity. Furthermore, soluble mutant huntingtin inhibits Sp1 binding to DNA in postmortem brain tissues of both presymptomatic and affected HD patients. Understanding these early molecular events in HD may provide an opportunity to interfere with the effects of mutant huntingtin before the development of disease symptoms.
Platinum(II) Complexes with Tetradentate Dianionic (O∧C*∧C*∧O)-Ligands (2011)

New tetradentate O∧C*∧C*∧O-ligands and the corresponding biscarbene platinum(II) complexes are reported. They were fully characterized by 1H NMR and 13C NMR spectroscopy as well as elemental analysis. Additionally, solid-state structures of bis[3,3′-(2-hydroxyethyl)-1H-imidazolium-2,2′-diylidene]methane-1,1′-diylplatinum(II) dibromide and of bis[3,3′-(2-ethoxide)-1H-imidazolium-2,2′-diylidene]methane-1,1′-diylplatinum(II) potassium bromide are reported. The latter can be characterized as a one-dimensional chain structure formed by coordination of potassium bromide.
The Universality of the Solubility Parameter (1969)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTThe Universality of the Solubility ParameterCharles M. HansenCite this: Ind. Eng. Chem. Prod. Res. Dev. 1969, 8, 1, 2–11Publication Date (Print):March 1, 1969Publication History Published online1 May 2002Published inissue 1 March 1969https://doi.org/10.1021/i360029a002RIGHTS & PERMISSIONSArticle Views5821Altmetric-Citations479LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (2 MB) Get e-Alerts
The structural basis of germline-encoded VH3 immunoglobulin binding to staphylococcal protein A. (1993)

The ability of human VH3 immunoglobulins (Ig) to bind to staphylococcal protein A (SPA) via their Fab region is analogous to the binding of bacterial superantigens to T cell receptors. The present report establishes the structural basis for the interaction of SPA and VH3 Ig. We have studied a panel of 27 human monoclonal IgM that were derived from fetal B lymphocytes. As such, these IgM were expected to be encoded by unmutated germline genes. Binding to SPA in ELISA occurred with 15 of 15 VH3 IgM, but none of 12 IgM from the VH1, VH4, VH5, or VH6 families. The VH sequences of the 27 IgM were derived from 20 distinct VH elements, including 11 from the VH3 family. Use of D, JH, and CL genes was similar among VH3 and non-VH3 IgM. A comparison of the corresponding VH protein sequences, and those of previously studied IgM, identified a probable site for SPA binding that includes VH3 residues in framework region 3 (FR3), and perhaps FR1 and 3' complementary determining region 2. The results thus demonstrate that among human IgM, specificity for SPA is encoded by at least 11 different VH3 germline genes. Furthermore, like the T cell superantigens, SPA likely binds to residues in the VH framework region, outside the classical antigen-binding site of the hypervariable loops.
A High-Speed Multi-Channel Readout for SSPM Arrays (2011)

Solid-state photomultiplier (SSPM) arrays are a new technology that shows great promise to be used in PET detector modules. To reduce the number of channels in a PET scanner, it is attractive to use resistor dividers, which multiplex the number of channels in each module down to four analog output channels. It is also attractive to have SSPMs with large pixels (3×3 or 4×4 mm <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> ). However, large area SSPMs have correspondingly large capacitances (up to 1 nF) and directly coupling them to a resistive network will create a low-pass filter with a high RC time constant. In order to overcome this, we have developed an application specific integrated circuit (ASIC) that “hides” the intrinsic capacitance of the SSPM array from a resistive network with current buffers, significantly improving the rise time of the SSPM signals when connected to the resistive network. The ASIC is designed for a wide range of SSPM sizes, up to 1 nF (equivalent to 4×4 mm <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> ), and for input currents of 1 to 20 mA per channel. To accommodate various sizes of SSPM pixels, the ASIC uses adjustable current sources (to keep the feedback loop stable). A test ASIC has been fabricated that has 16 input channels, an internal resistor divider array that produces four analog outputs, 16 buffers that isolate the SSPM capacitance from the resistor array, and four output buffers that can drive 100 ohm loads. Thus, detector modules based on SSPMs and this ASIC should be compatible with the block detector readout electronics found in many PET cameras. Tests of this ASIC show that its rise time is <; 2 ns (and it will thus not significantly degrade the ~7 ns rise time of the SSPM pixels) and that the analog decoding circuitry functions properly.
Irinotecan in relapsed or refractory non-Hodgkin's lymphomas. Indications of activity in a phase II trial. (2002)

Because irinotecan (CPT-11, Camptosar) is a topoisomerase I inhibitor with a broad spectrum of antitumor clinical activity, we investigated its activity in relapsed or refractory non-Hodgkin's lymphomas (NHLs). Irinotecan at 300 mg/m2 i.v. was administered every 21 days with intensive loperamide management of diarrhea. Responders received up to six treatment cycles. Of 44 registered patients, 32 are evaluable for response. Seventeen patients had received one previous regimen, and 15 patients had received two. Disease was refractory to the regimen preceding irinotecan in 12 patients. At baseline, serum lactate dehydrogenase levels were high in 47% (14/30), and beta-2-microglobulin levels were higher than 3.0 mg/L in 29% (8/28) of patients. Responses were seen in 12 of 32 (38%) patients (95% confidence interval [CI] = 21%-56%). Response rates were 43% for seven indolent (95% CI = 10%-82%), 0% for three mantle cell (95% CI = 0%-71%), 44% for 18 relapsed aggressive (95% CI = 22%-69%), and 20% for five refractory aggressive NHLs (95% CI = 1%-72%). Grade 3/4 toxicities included myelosuppression, neutropenic fever, and diarrhea. Irinotecan appears active and relatively well tolerated in patients with relapsed aggressive or indolent NHL. Accrual to this study is continuing for better determination of response rates in all histologic subtypes of NHL.