gebhart/patrepeval huggingface dataset:
Controlled Diels−Alder Reactions Used To Incorporate Highly Efficient Polyenic Chromophores into Maleimide-Containing Side-Chain Polymers for Electro-Optics (2009)

Using an in situ Diels−Alder (DA) “click chemistry” strategy for reactions between anthracene and maleimide functional groups, two prototypes of novel nonlinear optical (NLO) side-chain polymers (PMI-A7 and PMI-B7) containing highly hyperpolarizable but chemically sensitive phenyltetraene-based chromophores were synthesized and their nonlinear optical and thermal properties were characterized. Through rational material design, these NLO side-chain polymers exhibited good processibility, large electro-optic (E-O) coefficients (r33, of up to 263 and 287 pm/V at 1.31 μm wavelength respectively), and excellent temporal stability. These combined properties make them promising materials for E-O device applications. Compared to PMI-B7, PMI-A7 exhibited significantly enhanced temporal stability (87% of the initial r33 values was retained after 550 h at 85 °C) and solvent resistance, which was attributed to slight cross-linking from the side reaction between maleimide and phenyltetraenic chromophore moieties. This study showed that it is possible to take advantage of some side reactions to enhance the performance of NLO materials.
A practical guide to pharmaceutical polymorph screening & selection (2014)

Prevalence and importance of polymorphism occurring in pharmaceutical compounds are well recognized. It is of great importance to prepare and select the right form from the beginning during drug discovery and development. This review introduces the basic concepts of “What is polymorphism?”, addresses a fundamental question of “Why do polymorphs form?”, and provides practical guidelines of “How to prepare polymorphs?” “How to evaluate the relative thermodynamic stability between polymorphs?”, and “How to analyze polymorphs?”. Moreover, case studies of pharmaceutically important polymorphs are provided.
An analysis of some fundamental problems in adaptive control of force and impedance behavior: theory and experiments (1995)

Force control in robotic mechanisms has been extensively researched. There have been several results which have concentrated either on explicit force control or impedance control. Further, many of these works require accurate identification of the stiffness of the environment. In this work the authors examine the role of adaptive controllers for force control with unknown system and environment parameters and clearly integrate several fundamental issues such as explicit force control, impedance control, and impedance control combined with a desired force control. All of these issues are treated using standard model-reference adaptive control (MRAC) approach. Within the same framework, the authors analyze other equally fundamental issues such as environment stiffness identification, stability of the complete system, and parameter convergence. The authors demonstrate the effectiveness of the proposed theory through experiments.
Restoration of W1282X CFTR Activity by Enhanced Expression (2007)

Cystic fibrosis results from mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene. Premature termination codons represent a common minority of CFTR mutations, and are caused by base pair substitutions that produce abnormal stop codons in the coding sequence. Select aminoglycosides induce "translational readthrough" of premature stop codons and have been shown to restore full-length functional protein in a number of preclinical and clinical settings. We studied two well-described premature termination codons found in the distal open reading frame of CFTR, W1282X and R1162X, expressed in polarizing and nonpolarizing cells. Our findings indicate that W1282X CFTR-expressing cells demonstrate significantly greater CFTR activity when overexpressed compared with R1162X CFTR cells, even when truncated protein is the predominant form. In addition, our results show that the combination of stimulated expression and stop codon suppression produces additive effects on CFTR-mediated ion transport. These findings provide evidence that W1282X CFTR exhibits membrane localization and retained chloride channel function after enhanced expression, and suggest that patients harboring this mutation may be more susceptible to CFTR rescue.
Discovery of Quinoline Analogues as Potent Antivirals against Enterovirus D68 (EV-D68) (2019)

Enterovirus D68 (EV-D68) is an atypical nonpolio enterovirus that mainly infects the respiratory system of humans, leading to moderate-to-severe respiratory diseases. In rare cases, EV-D68 can spread to the central nervous system and cause paralysis in infected patients, especially young children and immunocompromised individuals. There is currently no approved vaccine or antiviral available for the prevention and treatment of EV-D68. In this study, we aimed to improve the antiviral potency and selectivity of a previously reported EV-D68 inhibitor, dibucaine, through structure-activity relationship studies. In total, 60 compounds were synthesized and tested against EV-D68 using the viral cytopathic effect assay. Three compounds 10a, 12a, and 12c were identified to have significantly improved potency (EC<sub>50</sub> < 1 μM) and a high selectivity index (>180) compared with dibucaine against five different strains of EV-D68 viruses. These compounds also showed potent antiviral activity in neuronal cells, such as A172 and SH-SY5Y cells, suggesting they might be further developed for the treatment of both respiratory infection as well as neuronal infection.
The relation between bone marrow angiogenesis and the proliferation index Ki-67 in multiple myeloma (2004)

In multiple myeloma, apart from being a marker of proliferative activity, Ki-67 is also associated with bone marrow angiogenesis and tumour burden.
Chemical Cleavage of Proteins (1982)

I have been charged with introducing the topic of chemical cleavage of proteins and also with “presenting new data.” Since virtually all of the new developments in this area in the last five years concern techniques for cleaving peptides at tryptophanyl residues, I will briefly review the methods available for cleaving at sites other than tryptophan and then discuss tryptophanyl bond cleavage in more detail. My evaluations of the various techniques will be from the distinctly biased perspective of the researcher interested in producing fragments of proteins suitable for sequence analysis by modern automated sequencing equipment, and given the title of this conference, I suspect those biases are widely shared in this audience.
Attention-Deficit/Hyperactivity Disorder (ADHD) Symptoms in Pediatric Narcolepsy: A Cross-Sectional Study (2015)

Pediatric patients with narcolepsy have high levels of treatment-resistant attention-deficit/hyperactivity disorder (ADHD) symptoms. The optimal treatment for ADHD symptoms in these patients warrants further evaluation in longitudinal intervention studies.
Use of concentrated insulin human regular (U-500) for patients with diabetes (2010)

U-500 insulin is efficacious and safe for patients with type 2 diabetes who require a high dosage of insulin to control hyperglycemia. However, health care professionals should be well educated and vigilant about patient safety issues regarding the drug's prescription, dosing, and administration.
A single cell electroporation chip (2004)

Increasing the cell membrane's permeability can be accomplished via single cell electroporation. Polar substances that cannot otherwise permeate the plasma membrane (such as dyes, drugs, DNA, proteins, peptides, and amino acids) can thus be introduced into the cell. We developed a polymeric chip that can selectively immobilize and locally electroporate single cells. This easy-to-use chip focuses the electric field, eliminating the need to manipulate electrodes or glass pipettes. Moreover, this device allows parallel single cell electroporation. We demonstrate the effectiveness of our device design by electroporating HeLa cells using low applied voltages (< 1 V). We found the average transmembrane potential required for electroporation of HeLa cells to be 0.51 +/- 0.13 V. Membrane permeation is assessed electrically by measuring characteristic 'jumps' in current that correspond to drops in cell resistance, and microscopically by recording either the escape of cytoplasmic dye Calcein AM or the entrance of Trypan blue stain.
Validity and Efficacy of Screening Algorithms for Assessing Deep Brain Stimulation Candidacy in Parkinson's Disease (2014)

In this single center study, Stimulus was a more appropriate screening measure than the Florida Surgical Questionnaire for PD to assess DBS candidacy for PD.
Disruption of Maize Kernel Growth and Development by Heat Stress (Role of Cytokinin/Abscisic Acid Balance) (1994)

Temperature stress during kernel development affects maize (Zea mays L.) grain growth and yield stability. Maize kernels (hybrid A619 x W64A) were cultured in vitro at 3 d after pollination and either maintained at 25[deg]C or transferred to 35[deg]C for 4 or 8 d, then returned to 25[deg]C until physiological maturity. Kernel fresh and dry matter accumulation was severely disrupted by the long-term heat stress (8 d at 35[deg]C) and did not recover when transferred back to 25[deg]C, resulting in abortion of 97% of the kernels. Kernels exposed to 35[deg]C for 4 d (short-term heat stress) exhibited a recovery in kernel growth and water content at about 18 d after pollination and kernel abortion was reduced to about 23%. During the cell division phase, abscisic acid (ABA) levels showed a steady decline in the control but maintained a moderate level in the heat-stressed kernels. However, later in development heat-stressed kernels had significantly higher levels of ABA than the control. Cytokinin analysis confirmed a peak in zeatin riboside and zeatin levels in control kernels at 10 to 12d after pollination. In contrast, kernels subjected to 4 d of heat stress had no detectable levels of zeatin and the zeatin riboside peak was reduced by 70% and delayed until 18 d after pollination. The long-term heat-stressed kernels showed low to nondetectable levels of either zeatin riboside or zeatin. Regression analysis of ABA level against cytokinin level during the endosperm cell division phase revealed a highly significant negative correlation in nonstressed kernels but no correlation in kernels exposed to short-term or long-term heat stress. Application of benzyladenine to heat-stressed, growth-chamber-grown plants increased thermotolerance in part by reducing kernel abortion at the tip and middle positions on the ear. These results confirm that shift in hormone balance of kernels is one mechanism by which heat stress disrupts maize kernel development. The maintenance of high levels of cytokinins in the kernels during heat stress appears to be important in increasing thermotolerance and providing yield stability of maize.
Impaired wound repair and delayed angiogenesis in aged mice. (1999)

Wound repair is a multistep process consisting of hemostasis, inflammatory cell infiltration, tissue regrowth, and remodeling. In aged individuals, this progression of events is altered, resulting in wounds that heal more slowly than wounds in the young. These studies were designed to examine the proliferative phase of repair in young and aged mice, with attention to the angiogenic process. Using a standardized excisional injury model, wound re-epithelialization, collagen accumulation, and angiogenesis were examined. Re-epithelialization and collagen synthesis were substantially delayed in aged mice as compared with young mice. Angiogenesis in wounds from aged mice was also delayed, with significantly more capillary growth in wounds from young mice than aged mice. In addition, wounds from aged mice contained significantly less of the angiogenic mediators fibroblast growth factor-2 (FGF-2) and vascular endothelial growth factor (VEGF) than wounds from young animals (p < 0.05). Because macrophages are a rich source of angiogenic factors in wounds, macrophage production of VEGF was examined. Macrophages from aged mice produced significantly less VEGF than cells from young mice. To examine the in vivo endothelial cell responsiveness, a defined amount of rFGF-2 was suspended in Matrigel and placed subcutaneously in either young or aged mice. In response to FGF-2, capillary growth into Matrigel was significantly less in aged than young mice. The results suggest that a decline in angiogenic growth factor production, as well as a decline in endothelial responsiveness to specific factors, may account for the delayed wound angiogenesis in aged mice. These results also indicate that age-related alterations in macrophage function might partially account for the overall delay in the wound repair process.
A Pyrrolysine Analogue for Protein Click Chemistry (2009)

Ignoring the STOP sign: A pyrrolysine analogue bearing a terminal alkyne was site-specifically incorporated into recombinant calmodulin (CaM) through a UAG codon. The resulting protein was labeled with an azide-containing dye using a copper(I)-catalyzed click reaction. Subsequent application of an orthogonal cysteine tagging method yielded a CaM labeled with two distinct fluorophores that enabled its study by FRET spectroscopy.
Renal cell carcinoma‐infiltrating natural killer cells express differential repertoires of activating and inhibitory receptors and are inhibited by specific HLA class I allotypes (2003)

Among tumor-infiltrating lymphocytes (TILs) directly isolated from renal cell carcinomas (RCCs), we found substantial numbers of natural killer (NK) cells in most tumor tissues. They could be identified reliably in situ with an antibody directed against the activating receptor (AR) NKp46 that is exclusively expressed by all NK cells. NK-enriched TILs (NK-TILs) showed cytotoxicity against major histocompatibility complex (MHC) class I-negative cell lines. The ability to detect lysis of target cells was dependent on the percentage of NK cells within the TILs, and cytotoxicity was only observed after overnight activation with low-dose interleukin-2 (IL-2). Infiltrating NK cells were found to express various inhibitory receptors (IRs); among these the CD94/NKG2A receptor complex was overrepresented compared to the autologous peripheral blood mononuclear cell (PBMC) population. Other IRs were underrepresented, indicating that NK subpopulations vary in their tumor-infiltrating capacity. IRs expressed by NK-TILs are functional since receptor engagement with MHC class I ligands presented by human leukocyte antigen (HLA)-transfected target cell lines was able to inhibit NK-mediated cytotoxicity. NK-TILs were also able to lyse autologous or allogeneic tumor cell lines in vitro. This activity correlated with low HLA class I surface expression since lysis could be inhibited by interferon (IFN)-gamma-expressing RCC transductants that displayed a higher surface density of HLA class I molecules. Therefore, NK cells infiltrating tumor tissues have an inherent ability to recognize transformed cells, but they require cytokine activation and are sensitive to inhibition by IR ligands.
Recombinant human tumor necrosis factor induces acute reductions in food intake and body weight in mice. (1988)

We examined the effects of treatment with rHuTNF on food consumption and body weight in C3H/HeJ mice. rHuTNF was administered intraperitoneally either by injections of 3, 12, or 24 micrograms twice a day or by implantation of osmotic pumps that released 0.75, 3, or 12 micrograms per day. Dose-dependent reductions in both food intake and weight were induced by rHuTNF. However, in spite of continued exposure to rHuTNF, the mice developed a resistance to rHuTNF and resumed their pretreatment food intake and weight. Non-immunological factors may play a role in the development of this tolerance, since it developed rapidly and faded within 2 wk of cessation of exposure to rHuTNF.
Biology of streptococcal capsular polysaccharides (1997)

Journal Article Biology of streptococcal capsular polysaccharides Get access M.R. Wessels M.R. Wessels Channing Laboratory, Brigham and Women's Hospital, and Division of Infectious Diseases, Beth Israel Hospital, Harvard Medical School, Boston, MA, USA Dr Michael R. Wessels Channing Laboratory, Brigham and Women's Hospital, 181 Longwood Avenue, Boston, MA 02115, USA. Search for other works by this author on: Oxford Academic Google Scholar Journal of Applied Microbiology, Volume 83, Issue S1, 1 October 1997, Pages 20S–31S, https://doi.org/10.1046/j.1365-2672.83.s1.3.x Published: 01 October 1997
Objects in Context (2007)

In the task of visual object categorization, semantic context can play the very important role of reducing ambiguity in objects' visual appearance. In this work we propose to incorporate semantic object context as a post-processing step into any off-the-shelf object categorization model. Using a conditional random field (CRF) framework, our approach maximizes object label agreement according to contextual relevance. We compare two sources of context: one learned from training data and another queried from Google Sets. The overall performance of the proposed framework is evaluated on the PASCAL and MSRC datasets. Our findings conclude that incorporating context into object categorization greatly improves categorization accuracy.
Quantification and Characterization of Pregnancy-associated Complexes of Angiotensinogen and the Proform of Eosinophil Major Basic Protein in Serum and Amniotic Fluid (2000)

ProMBP/Ang complexes are present in serum from nonpregnant persons as well as pregnant women, and the direct assays described here will make it possible to study the biochemistry and the clinical significance of different ProMBP complexes in pathological conditions and pregnancy.
Transforming growth factor beta 1 suppression of c-myc gene transcription: role in inhibition of keratinocyte proliferation. (1990)

Transforming growth factor beta 1 (TGF-beta 1) is a potent growth inhibitor for many cell types, including most epithelial cells. However, the mechanism of growth inhibition is unknown. In skin keratinocytes, TGF-beta 1 has been shown to inhibit growth and to rapidly reduce c-myc expression. It has been demonstrated that protein synthesis is required for TGF-beta 1 regulation of c-myc in keratinocytes. Here we present evidence that treatment of mouse BALB/MK keratinocyte cells with either antisense c-myc oligonucleotides or TGF-beta 1 inhibited cell entry into S phase. These results suggest that TGF-beta inhibition of c-myc expression may be essential for growth inhibition by TGF-beta 1. The block in c-myc expression by TGF-beta 1 occurred at the level of transcriptional initiation. Studies with a series of 5' deletion c-myc/chloramphenicol acetyltransferase constructs indicated that a cis regulatory element(s), which resides between positions -100 and +71 relative to P1 transcription start site, is responsible for the TGF-beta 1 responsiveness. Based on these data, it is proposed that the mechanism of TGF-beta 1 growth inhibition involves synthesis or modification of a protein that may interact with a specific element(s) in the 5' regulatory region of the c-myc gene, resulting in inhibition of transcriptional initiation.
Clinical Assessment of a Biofilm-disrupting Agent for the Management of Chronic Wounds Compared With Standard of Care: A Therapeutic Approach. (2018)

The combination of the experimental product and wound debridement significantly improved wound healing rates by disrupting the biofilm, which protects multispecies bacteria within a chronic wound. Given the significant wound size reduction and closure rates observed in these long-term, nonhealing wounds, as well as the lack of related serious adverse events, the investigators believe the biofilm-disrupting wound gel to be a safe and effective treatment for recalcitrant chronic wounds.
Swine Influenza Virus Vaccine: Potentiation of Antibody Responses in Rhesus Monkeys (1977)

Polyriboinosinic-polyribocytidylic acid stabilized with poly-L-lysine and carboxymethylcellulose [poly(ICLC)] enhances the antibody response in rhesus monkeys immunized with swine influenza virus subunit vaccine. Monkeys given the vaccine-adjuvant combination had earlier and significantly (P less than .05) higher titers by 14 days compared to those that received vaccine alone. The potentiation of the antibody response of young monkeys given a split-virus vaccine in combination with poly(ICLC) suggests that this vaccine-adjuvant combination may similarly provide a potentially useful alternative approach to the immunization of pediatric and young adult age groups against swine influenza.
The salivary microbiota as a diagnostic indicator of oral cancer: A descriptive, non-randomized study of cancer-free and oral squamous cell carcinoma subjects (2005)

High salivary counts of C. gingivalis, P. melaninogenica and S. mitis may be diagnostic indicators of OSCC.
Phosphatidylinositol 3-kinase-dependent activation of trypsinogen modulates the severity of acute pancreatitis (2001)

Intra-acinar cell activation of digestive enzyme zymogens including trypsinogen is generally believed to be an early and critical event in acute pancreatitis. We have found that the phosphatidylinositol 3-kinase inhibitor wortmannin can reduce the intrapancreatic activation of trypsinogen that occurs during two dissimilar experimental models of rodent acute pancreatitis, secretagogue- and duct injection-induced pancreatitis. The severity of both models was also reduced by wortmannin administration. In contrast, the NF-kappa B activation that occurs during the early stages of secretagogue-induced pancreatitis is not altered by administration of wortmannin. Ex vivo, caerulein-induced trypsinogen activation is inhibited by wortmannin and LY294002. However, the cytoskeletal changes induced by caerulein were not affected by wortmannin. Concentrations of caerulein that induced ex vivo trypsinogen activation do not significantly increase phosphatidylinositol-3,4-bisphosphate or phosphatidylinositol 3,4,5-trisphosphate levels or induce phosphorylation of Akt/PKB, suggesting that class I phosphatidylinositol 3-kinases are not involved. The concentration of wortmannin that inhibits trypsinogen activation causes a 75% decrease in phosphatidylinositol 3-phosphate, which is implicated in vesicle trafficking and fusion. We conclude that a wortmannin-inhibitable phosphatidylinositol 3-kinase is necessary for intrapancreatic activation of trypsinogen and regulating the severity of acute pancreatitis. Our observations suggest that phosphatidylinositol 3-kinase inhibition might be of benefit in preventing acute pancreatitis.