gebhart/patrepeval huggingface dataset:
Cardiopulmonary bypass induced inflammation: pathophysiology and treatment. An update (2002)

Cardiac surgery with cardiopulmonary bypass (CPB) induces an acute phase reaction that has been implicated in the pathogenesis of several postoperative complications. Recent data indicate that a complex sequence of events leads to the final activation of leukocytes and endothelial cells (EC), which is responsible for cell dysfunction in different organs. Activation of the contact system, endotoxemia, ischemia and reperfusion injury and surgical trauma are all potential triggers of inflammation following CPB. Different pro- and anti-inflammatory mediators (cytokines, adhesion molecules) are involved and their release is mediated by intracellular transcription factors (nuclear factor-kappa B, NF-kappa B). In this review, we examine recent advances in the understanding of the pathophysiology of the CPB-induced acute phase reaction and evaluate the different pharmacological, technical and surgical strategies used to reduce its effects. Emphasis is given to the central role of transcription factor NF-kappa B in the complex mechanism of the inflammatory reaction and to the effects of compounds such as heparin and glycosaminoglycans, phosphodiesterase inhibitors and protease inhibitors whose role as anti-inflammatory agent has only recently been recognized.
Proteomic fingerprints distinguish microglia, bone marrow, and spleen macrophage populations (2005)

Mononuclear phagocytes (MP; dendritic cells, monocytes, tissue macrophages, and microglia) maintain tissue homeostasis and provide a first line of defense against invading pathogens. In specific circumstances, MPs also induce inflammatory responses and as such affect disease onset and progression. Despite intensive research into MP biology, little is known of the functional and molecular properties of individual MP subtypes. Using a novel proteomics platform, unique protein patterns and protein identities were observed among populations of spleen and bone marrow macrophages and microglia. Cells were obtained from C57BL/6 mice and were cultivated in macrophage colony-stimulating factor. MP subtypes were indistinguishable by morphological or antigenic criteria. Protein profiling by Surface Enhanced Laser Desorption Ionization-Time of Flight (SELDI-TOF) ProteinChip assays with weak cationic exchange chips showed unique MP spectral profiles. Corresponding protein fractions were recovered by high performance liquid chromatography and identified by liquid chromatography tandem mass spectrometry. The results provide a unique means to distinguish microglia from other MP subtypes.
A Series of Lanthanide-Based Cluster Organic Frameworks Made of Heptanuclear Trigonal-Prismatic Cluster Units (2012)

A series of lanthanide-based cluster organic frameworks, [Ln(7)(μ(3)-OH)(8)L(9)(H(2)O)(6)]·4ClO(4)·3HL·nH(2)O [HL = 4-pyridin-4-ylbenzoic acid; Ln = Y (1), La (2), Gd (3), Yb (6), n = 6; Ln = Dy (4), Er (5), n = 4], were hydrothermally made and characterized. It is the first example of heptanuclear trigonal-prismatic lanthanide clusters via a hydrothermal reaction. The magnetic properties of 3 and 4 show typical antiferromagnetic interactions.
A Hybrid Frequency-Domain/Image-Domain Deep Network for Magnetic Resonance Image Reconstruction (2019)

Decreasing magnetic resonance (MR) image acquisition times can potentially make MR examinations more accessible. Compressed sensing (CS)-based image reconstruction methods decrease MR acquisition time by reconstructing high-quality images from data that were originally sampled at rates inferior to the Nyquist-Shannon sampling theorem. Deep-learning methods have been used to solve the CS MR reconstruction problem. These proposed methods are able to quickly reconstruct images in a single pass using an appropriately trained network. A variety of different network architectures (e.g., U-nets and Residual U-nets) have been proposed to tackle the CS reconstruction problem. A drawback of these architectures is that they typically only work on image domain data. For undersampled data, the images computed by applying the inverse Fast Fourier Transform (iFFT) are aliased. In this work we propose a hybrid architecture, termed W-net, that works both in the k-space (or frequency-domain) and the image (or spatial) domains. Our network is composed of a complex-valued residual U-net in the k-space domain, an iFFT operation, and a real-valued Unet in the image domain. Our experiments demonstrated, using MR raw k-space data, that the proposed hybrid approach can potentially improve CS reconstruction compared to deep-learning networks that operate only in the image domain. In this study we compare our method with four previously published deep neural networks and examine their ability to reconstruct images that are subsequently used to generate regional volume estimates. Our technique was ranked second in the quantitative analysis, but qualitative analysis indicated that our reconstruction performed the best in hard to reconstruct regions, such as the cerebellum. All images reconstructed with our method were successfully post-processed, and showed good volumetry agreement compared with the fully sampled reconstruction measures.
3-6 junction photovoltaic cells for space and terrestrial concentrator applications (2005)

Multi-junction solar cells made from III-V compound semiconductors are the highest efficient photovoltaic devices today. Different solar cell structures have been developed for space as well as terrestrial concentrator applications in a close collaboration between the Fraunhofer ISE and RWE-SSP in Germany. Efficiencies up to 29.1% (AM0) have been recently achieved for a 30.2 cm/sup 2/ GaInP/GaInAs/Ge device at RWE-SSP. Triple-junction solar cells with remaining factors up to 88 % after irradiation with 1 MeV electrons at a fluence of 10/sup 15/ cm/sup -2/ have been demonstrated at Fraunhofer ISE. Multi-junction solar cells with 5 and even 6 junctions for even higher radiation hardness are under development. On the other hand lattice mismatched triple-junction solar cells are an excellent solution for terrestrial concentrator applications. Efficiencies up to 35.2 % at a concentration ratio of 443-637 (AM1.5d, low AOD) have been obtained.
Groundwater dating applied for geological disposal of radioactive waste (2014)

放射性廃棄物の地層処分および関連する研究開発において，地質環境調査の一環として実施される地下水の年代測定手法についてレビューを行った。対象としたプロジェクトは，日本，フィンランド，スウェーデン，ベルギー，イギリス，ドイツ，フランス，スイス，カナダおよびアメリカで実施されているプロジェクトである。調査対象の岩種は，花崗岩，石灰岩，岩塩などであり，それらの岩盤中を流動する地下水の年代測定事例を収集した。その結果，年代測定にあたっては，単一の物質や核種を利用せず，複数の手法を組み合わせ，比較しつつ考察することが重要であることが示唆される。
A novel Yes-related kinase, Yrk, is expressed at elevated levels in neural and hematopoietic tissues. (1993)

While screening a chicken kidney cDNA library for the normal homolog of the yes oncogene, we isolated a clone that encodes a novel non-receptor type protein tyrosine kinase of the Src family. We named this gene product Yrk (York), as an acronym for Yes-related kinase. As predicted from the cDNA sequence, the Yrk protein consists of 536 amino acids and has all the canonical features of a Src kinase. At the amino terminus it contains a myristylation signal, followed by a unique domain, SH3 and SH2 motifs, an ATP binding site, a kinase region and a carboxy-terminal sequence with a potential regulatory tyrosine at position 530. The sequence of the Yrk protein showed 79% identity with human Fyn and 72% identity with chicken Yes. To eliminate the possibility that the Yrk protein is an avian homolog of mammalian Fyn, we isolated and sequenced the chicken fyn cDNA. The sequence data together with Southern and Northern blot analyses showed that the chicken yrk gene is distinct from the chicken fyn gene. Antibodies generated against the unique domain of the yrk protein expressed in bacteria precipitated a 60-kDa protein that was active in an immune complex kinase assay and was phosphorylated on tyrosine. Expression of the Yrk protein in adult chicken tissues was elevated in cerebellum and spleen. Relatively high levels of Yrk were also found in lung and skin.
Possible Existence of Common Internalization Mechanisms among Arginine-rich Peptides (2002)

Basic peptides such as human immunodeficiency virus type 1 (HIV-1) Tat-(48-60) and Drosophila Antennapedia-(43-58) have been reported to have a membrane permeability and a carrier function for intracellular protein delivery. We have shown that not only Tat-(48-60) but many arginine-rich peptides, including HIV-1 Rev-(34-50) and octaarginine (Arg(8)), efficiently translocated through the cell membranes and worked as protein carriers (Futaki, S., Suzuki, T., Ohashi, W., Yagami, T., Tanaka, S., Ueda, K., and Sugiura, Y. (2001) J. Biol. Chem. 276, 5836-5840). Quantification and time course analyses of the cellular uptake of the above peptides by mouse macrophage RAW264.7, human cervical carcinoma HeLa, and simian kidney COS-7 cells revealed that Rev-(34-50) and Arg(8) had a comparable translocation efficiency to Tat-(48-60). Internalization of Tat-(48-60) and Rev-(34-50) was saturable and inhibited by the excess addition of the other peptide. Typical endocytosis and metabolic inhibitors had little effect on the internalization. The uptake of these peptides was significantly inhibited in the presence of heparan sulfate or chondroitin sulfates A, B, and C. Treatment of the cells with the anti-heparan sulfate antibody or heparinase III also lowered the translocation of these peptides. These results strongly suggest that the arginine-rich basic peptides share a certain part of the internalization pathway.
Laser soldering technique for sutureless urethral surgery. (1997)

Investigators have attempted sutureless surgery to decrease operative time, lessen the inflammatory response, maintain luminal continuity, and increase the ease of performing technically difficult surgery. Only recently has laser-tissue welding (LTW) been used for urologic reconstruction in humans. Herein, we present our technique of laser soldering with the half-watt diode laser and wavelength matched albumin-based solder. Our methodology of LTW relies on bonding between the outer surface of the wound edges and the solder. The 808-nm diode wavelength does not penetrate deep tissue, and thus relies on indocyanine green dye to localize photon absorption. Since 1994, we have performed LTW, as an adjunct to suturing (N = 25) and as a primary means of tissue closure (N = 11). Preoperative diagnoses included hypospadias, urethral stricture, urethral diverticulum, and urethral fistulae. Follow-up ranged between 3 months and 3 years to identify complications of wound healing, stricture, and fistula formation. In the 37 patients undergoing urethral surgery, no strictures or diverticula have resulted. None of the patients have had wound infections or poor wound healing. Overall, five patients have developed fistulas between 2 weeks and 6 months postoperatively. The location of the hypospadiac meatus was scrotal or penoscrotal in four of these patients. Two fistulas developed following sutureless urethroplasty (reoperative) after traumatic catheterization for urinary retention (one case for inadvertent catheter removal). In our initial experience, the overall complication rate using laser soldering was 19% compared to 24% in an historical control group. Half of the complications occurred in a reoperative situation. More recently, the overall fistula rate was 14%; however, for primary cases, the current fistula rate is only 6%. LTW is safe and easy to perform. The application of protein solders (+/-chromophores) have permitted far greater tensile strengths to be achieved than laser alone. Temperature-control and chromophore-control have permitted safety and efficacy to be achieved. Solder application site and technique are equally important in the success of the LTW process. A randomized, prospective study comparing LTW to suturing is ongoing.
High-minded pursuit of the exotic (1993)

One and two TTTA repeat expansions have been found in the coding region of icaC gene of Staphylococcus aureus variants which influence the expression of IcaC protein and alter the phenotype. Yet, the mechanism of these small-size TTTA repeat expansions remains unclear. In this study, we performed high-resolution nuclear magnetic resonance spectroscopic studies on TTTA repeats. Our results show that a DNA sequence containing three TTTA repeats can fold into dumbbell structures with a 3' or 5'-overhang. Exchange of these dumbbells makes the sequence behave like a 2-nt TT mini-loop at 25°C. The occurrence of these mini-loop and dumbbell structures in the nascent strand during DNA replication provides possible mechanistic pathways which account for one and two repeat expansions.
DNA Looping and Unlooping by AraC Protein (1990)

Expression of the L-arabinose BAD operon in Escherichia coli is regulated by AraC protein which acts both positively in the presence of arabinose to induce transcription and negatively in the absence of arabinose to repress transcription. The repression of the araBAD promoter is mediated by DNA looping between AraC protein bound at two sites near the promoter separated by 210 base pairs, araI and araO2. In vivo and in vitro experiments presented here show that an AraC dimer, with binding to half of araI and to araO2, maintains the repressed state of the operon. The addition of arabinose, which induces the operon, breaks the loop, and shifts the interactions from the distal araO2 site to the previously unoccupied half of the araI site. The conversion between the two states does not require additional binding of AraC protein and appears to be driven largely by properties of the protein rather than being specified by the slightly different DNA sequences of the binding sites. Slight reorientation of the subunits of AraC could specify looping or unlooping by the protein. Such a mechanism could account for regulation of DNA looping in other systems.
Obstructive Sleep Apnea of Obese Adults (2009)

Collapsible pharyngeal airway size is determined by interaction between structural properties of the pharyngeal airway and neural regulation of the pharyngeal dilating muscles. Obesity seems to have two distinct mechanical influences on the pharyngeal airway collapsibility. First, obesity increases soft tissue surrounding the pharyngeal airway within limited maxillomandible enclosure occupying and narrowing its space (pharyngeal anatomical imbalance). Second, obesity, particularly central obesity, increases visceral fat volume decreasing lung volume. Pharyngeal wall collapsibility is increased by the lung volume reduction, possibly through decreased longitudinal tracheal traction (lung volume hypothesis). Neural compensation for functioning structural abnormalities operating during wakefulness is lost during sleep, leading to pharyngeal obstruction. Instability of the negative feedback of the respiratory system may accelerate cycling of pharyngeal closure and opening. Improvement of the pharyngeal anatomical imbalance and maintenance of lung volume are the keys for safe perioperative airway managements of obese patients with obstructive sleep apnea.
On the modes and loss mechanisms of a high Q mechanical oscillator (2001)

We have performed laser-Doppler vibrometry measurements of the vibration of a double-paddle oscillator. Seven modes with principally out-of-plane motion have been identified. Their resonance frequencies and mode shapes are in excellent agreement with three-dimensional finite element simulations. We have found that the second antisymmetric torsional mode has exceptionally good vibration isolation of its mode shape. This explains its extremely small low temperature internal friction below 10 K (2×10−8). By correlating the internal friction of each mode with features of their mode shapes, a criterion has been established to develop high Q oscillators.
The microanatomical environment of the subthalamic nucleus (2007)

High-frequency stimulation of the subthalamic nucleus (STN) is a widely performed method to treat advanced Parkinson disease. Due to the limitations of current imaging techniques, the 3D microanatomy of the STN and its surrounding structures in the mesencephalon are not well known. Using images they obtained using a 9.4-tesla magnetic resonance (MR) imaging unit, the authors developed a 3D reconstruction of the STN and its immediate surroundings. During the postmortem investigation of a human brain, a sample of tissue in the area around the STN was isolated. This brain tissue was scanned in the three orthogonal planes at 1-mm slice thickness. The images generated were compared with photographs of conventionally stained brain tissue slices in different neuroanatomical books, and a 3D reconstruction was made. High-field MR imaging is an appropriate method for visualizing the microanatomy of the STN and its surroundings. The images allow an optimal analysis of the microenvironment of the STN in the three orthogonal planes and can be used for 3D reconstructions of this area with possible clinical applications in the future.
Rapid detection of ras oncogenes in human tumors: applications to colon, esophageal, and gastric cancer. (1989)

We have developed a rapid, nonradioactive large scale method for the detection of ras oncogenes in human tumors. DNA is amplified by the polymerase chain reaction (PCR), and then digested with specific restriction enzymes to detect either endogenous or primer-mediated Restriction Fragment Length Polymorphisms (RFLPs). We report here that three of 15 colon tumors tested contain K-ras codon 12 aspartic acid mutations and one, along with the HCT 116 colon carcinoma cell line, contains a K-ras codon 13 aspartic acid mutation. On the other hand, we did not detect H- or K-ras codon 12 mutations or the K-ras codon 13 aspartic acid mutation in 25 esophageal and 27 gastric cardia tumors isolated from patients in Lin-xing County, China. By incorporating nucleotide substitutions in PCR primers, this method can be applied towards the rapid, non-radioactive screening of virtually any genetic disease caused by known point mutations.
Monolithic Microfabricated Valves and Pumps by Multilayer Soft Lithography (2000)

Soft lithography is an alternative to silicon-based micromachining that uses replica molding of nontraditional elastomeric materials to fabricate stamps and microfluidic channels. We describe here an extension to the soft lithography paradigm, multilayer soft lithography, with which devices consisting of multiple layers may be fabricated from soft materials. We used this technique to build active microfluidic systems containing on-off valves, switching valves, and pumps entirely out of elastomer. The softness of these materials allows the device areas to be reduced by more than two orders of magnitude compared with silicon-based devices. The other advantages of soft lithography, such as rapid prototyping, ease of fabrication, and biocompatibility, are retained.
The effect upon channel capacity in wireless communications of perfect and imperfect knowledge of the channel (2000)

We present a model for time-varying communication single-access and multiple-access channels without feedback. We consider the difference between mutual information when the receiver knows the channel perfectly and mutual information when the receiver only has an estimate of the channel. We relate the variance of the channel measurement error at the receiver to upper and lower bounds for this difference in mutual information. We illustrate the use of our bounds on a channel modeled by a Gauss-Markov process, measured by a pilot tone. We relate the rate of time variation of the channel to the loss in mutual information due to imperfect knowledge of the measured channel.
Volatile anesthetics significantly suppress central and peripheral mammalian sodium channels (1998)

1. Voltage-dependent sodium channels are important for neuronal signal propagation and integration. 2. Non-mammalian preparations, such as squid giant axon, have sodium channels which have been found to be insensitive to clinical anesthetic concentrations. 3. On the other hand, sodium channels from mammalian neurons are much more sensitive to block by volatile anesthetics. 4. Due to a significant hyperpolarizing shift in steady-state inactivation, IC50s for sodium channel block at potentials close to the resting membrane potential overlapped with clinical anesthetic concentrations. 5. Hence, sodium channels in mammalian neurons may be sensitive molecular targets of volatile anesthetics.
El ABP, un enfoque estratégico para la formación en Educación Superior. Aportaciones de un análisis de la formación en Derecho. (2011)

&lt;p&gt;&lt;em&gt;Se ha generado un amplio consenso según el cual el aprendizaje basado en problemas permite promover mayores capacidades individuales para “aprender cómo aprender”, algo que nuestros estudiantes van a precisar en su aprendizaje futuro a lo largo de su vida profesional. En el análisis de los datos del caso desarrollado hemos pretendido encontrar argumentos sobre este consenso. Hemos analizado el grado de interés y de motivación para implicarse activamente los estudiantes en el desarrollo de una materia de Derecho, en formato de “proyecto”, y hemos visto el tipo de aprendizaje con el que se orientaron en este desarrollo así como el tipo de autorregulación que desempeñaron a lo largo de su proceso de estudio. Finalmente, se ofrecen tres tipos de argumentos que deberían ser considerados para diseminar propuestas como la que comentamos.&lt;/em&gt;&lt;br /&gt;&lt;br /&gt;&lt;strong&gt; &lt;/strong&gt;&lt;/p&gt;&lt;p&gt; &lt;/p&gt;
Characterization of the Escherichia coli AaeAB Efflux Pump: a Metabolic Relief Valve? (2004)

Treatment of Escherichia coli with p-hydroxybenzoic acid (pHBA) resulted in upregulation of yhcP, encoding a protein of the putative efflux protein family. Also upregulated were the adjacent genes yhcQ, encoding a protein of the membrane fusion protein family, and yhcR, encoding a small protein without a known or suggested function. The function of the upstream, divergently transcribed gene yhcS, encoding a regulatory protein of the LysR family, in regulating expression of yhcRQP was shown. Furthermore, it was demonstrated that several aromatic carboxylic acid compounds serve as inducers of yhcRQP expression. The efflux function encoded by yhcP was proven by the hypersensitivity to pHBA of a yhcP mutant strain. A yhcS mutant strain was also hypersensitive to pHBA. Expression of yhcQ and yhcP was necessary and sufficient for suppression of the pHBA hypersensitivity of the yhcS mutant. Only a few aromatic carboxylic acids of hundreds of diverse compounds tested were defined as substrates of the YhcQP efflux pump. Thus, we propose renaming yhcS, yhcR, yhcQ, and yhcP, to reflect their role in aromatic carboxylic acid efflux, to aaeR, aaeX, aaeA, and aaeB, respectively. The role of pHBA in normal E. coli metabolism and the highly regulated expression of the AaeAB efflux system suggests that the physiological role may be as a "metabolic relief valve" to alleviate toxic effects of imbalanced metabolism.
The physical nature and manufacture of activated carbon (1991)

After defining activated carbon, the author descriptionbes its structure and outlines the physical characteristics distinguishingone type of activated carbon fromanother. The adsorptive properties of these carbons, the raw materials used, and the manufacturing processes-chemlcal activation, and physical or thermal actlvatlon-are outlined. The high-temperature thermal route (which is the most important for the products employed Ingold recovery) using coconut shells or coal as the raw material is then discussed In some detail.