gebhart/patrepeval huggingface dataset:
TGF-beta 1 is an autocrine-negative growth regulator of human colon carcinoma FET cells in vivo as revealed by transfection of an antisense expression vector. (1992)

Transforming growth factor-beta 1 (TGF-beta 1) has previously been implicated as a potential negative autocrine or paracrine growth regulator of certain cell types (Arteaga, C. L., R. J. Coffey, Jr., T. C. Dugger, C. M. McCutchen, H. L. Moses, and R. M. Lyons. 1990. Cell Growth & Differ. 1:367-374; Hafez, M. M., D. Infante, S. Winawer, and E. Friedman. 1990. Cell Growth & Differ. 1:617-626; Glick, A. B., K. C. Flanders, D. Danielpour, S. H. Yuspa, and M. B. Sporn. 1989. Cell Regulation. 1:87-97). This is based mainly on experiments assessing the effects of exogenous TGF-beta 1 or neutralizing antibodies to TGF-beta 1 on normal or tumor cell proliferation in vitro. However, direct evidence demonstrating such a negative regulation of tumor cell growth in vivo is still lacking. To overcome this problem we have constructed and used an antisense expression vector for TGF-beta 1 as a means of regulating endogenous TGF-beta 1 expression in tumor cells. Antisense-transfected FET human colon carcinoma cells showed a fivefold reduction in TGF-beta 1 mRNA and 15-fold reduction in TGF-beta 1 secretion. Antisense mRNA was detected in transfected cells by an RNase protection assay. Compared to control cells, cultured antisense-transfected cells showed a reduction in lag phase time rather than a change in doubling time. Cloning efficiencies of transfected cells were four times greater than control cells in anchorage-independent assays. Control cells did not form tumors at 5 x 10(5) in athymic nude mice. Antisense-transfected cells formed tumors in 40% of animals injected. At higher inocula (1 x 10(6) cells) antisense-transfected cells formed tumors in 100% of animals injected, but control cells still failed to form tumors. These results show that TGF-beta 1 acts as a negative growth regulator of human colon carcinoma cells in vivo as well as in vitro. Acquisition of partial or full resistance to such inhibitory effects may therefore contribute to tumor development and progression.
Base-Free Methanol Dehydrogenation Using a Pincer-Supported Iron Compound and Lewis Acid Co-catalyst (2015)

Hydrogen is an attractive alternative energy vector to fossil fuels if effective methods for its storage and release can be developed. In particular, methanol, with a gravimetric hydrogen content of 12.6%, is a promising target for chemical hydrogen storage. To date, there are relatively few homogeneous transition metal compounds that catalyze the aqueous phase dehydrogenation of methanol to release hydrogen and carbon dioxide. In general, these catalysts utilize expensive precious metals and require a strong base. This paper shows that a pincer-supported Fe compound and a co-catalytic amount of a Lewis acid are capable of catalyzing base-free aqueous phase methanol dehydrogenation with turnover numbers up to 51 000. This is the highest turnover number reported for either a first-row transition metal or a base-free system. Additionally, this paper describes preliminary mechanistic experiments to understand the reaction pathway and propose a stepwise process, which requires metal–ligand cooperativity. This pathway is supported by DFT calculations and explains the role of the Lewis acid co-catalyst.
The structure and action of chitinases (1999)

Chitin is second only to cellulose in biomass and it is an important component of many cell wall structures. Several families of enzymes, of distinctly different structure, have evolved to hydrolyze this important polysaccaride. Glycohydrolase family 18 enzymes, chitinases, are characterized by an eight-fold alpha/beta barrel structure; it has representatives among bacteria, fungi, and higher plants. In general these chitinases act through a retaining mechanism in which beta linked polymer is cleaved to release a beta anomer product. Family 19 chitinases are found primarily in plants but some are found in bacteria. Members of this family are related to one another by amino acid sequence, but are unrelated to family 18 proteins. They have a bilobal structure with a high alpha-helical content. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. In general, the family 19 enzymes operate through an inverting mechanism.
Specificity and sensitivity of RHD genotyping methods by PCR‐based DNA amplification (1997)

We have compared the sensitivity and specificity of four PCR methods of RHD gene detection using different sets of primers located in the regions of highest divergence between the RHD and RHCE genes, notably exon 10 (method I), exon 7 (method II), exon 4 (method III) and intron 4 (method IV). Methods I-III were the most sensitive and gave a detectable signal with D-pos/D-neg mixtures containing only 0.001% D-positive cells. Moreover, method II could detect the equivalent DNA amount present in only three nucleated cells in the assay without hybridization of PCR products, whereas the sensitivity of the other methods was 10-50 times less. Investigation of D variants indicated that false-negative results were obtained with method II (D(IVb) variant), method III (D(VI) and DFR variants) and method IV (D(VI) variants), but not method I. Weak D (D(u)) was correctly detected as D-positive by all methods, but most cases of Rh(null) appeared as false-positives, as they carry normal RH genes that are not phenotypically expressed. Some false-positive results were obtained with method I in a few Caucasian DNA samples serotyped as RhD-neg but carrying a C- or E-allele, whereas a high incidence of false-positives was found among non-Caucasian Rh-negative samples by all methods. In the Caucasian population, however, we found a full correlation between the predicted genotype and observed phenotype at birth of 92 infants. Although we routinely use the four methods for RHD genotyping, a PCR strategy based on at least two methods is recommended.
5-Lipoxygenase: A Target for Antiinflammatory Drugs Revisited (1999)

Arachidonate 5-lipoxygenase is the key enzyme in leukotriene biosynthesis and catalyzes the initial steps in the conversion of arachidonic acid to biologically active leukotrienes. Leukotrienes are considered as potent potent mediators of inflammatory and allergic reactions which are locally released by leukocytes and other 5-LO expressing cells and exert their effects via binding to specific membrane receptors and, as suggested recently, the nuclear receptor PPARa. Because of the proinflammatory profile of leukotrienes it was assumed that leukotriene biosynthesis inhibitors and leukotriene receptor antagonists have a therapeutical potential in a variety of inflammatory diseases. Clinical studies confirmed the therapeutic value of the antileukotriene therapy in asthma but the results with leukotriene biosynthesis inhibitors in psoriasis, arthritis and inflammatory bowel disease were more or less disappointing. This review summarizes the biochemistry of the 5-lipoxygenase pathway, the pharmacology of FLAP and 5 lipoxygenase inhibitors and discusses possible criteria for the development of these drugs.
Bacteriophage and bacteriocin typing scheme for Clostridium difficile (1983)

The study of the epidemiology of infection with Clostridium difficile would be aided by a way to type individual bacterial isolates. We therefore sought bacteriophages for use in typing. With mitomycin C exposure (3 micrograms/ml), filtrates from 10 strains of C. difficile had plaque-forming lytic activity on other C. difficile strains. Individual phage were passaged and made into high-titer stock preparations for typing. Electron microscopy revealed tailed phage particles from one such preparation. In addition to phage, inhibitory activity without distinct plaque formation consistent with bacteriocins was observed for 20 strains. C. difficile isolates from 16 patients taken 1 to 14 days apart were similar in their phage sensitivity pattern, whereas isolates from separate geographic locations showed a great variety of patterns. We conclude that bacteriophage should be useful for typing strains of C. difficile.
Enhancement of the radiation response of cultured tumor cells by chloroquine (1973)

The treatment of tumor cells in culture with chloroquine after irradiation significantly reduces their survival, but no enhancement is seen when the cells are treated with the drug before irradiation. This suggests that the potentiation of the radiation response by chloroquine results from the impairment of the post-irradiation recovery processes. Incorporation studies with melanotic melanoma cells in culture derived from human malignant melanoma demonstrate significantly higher uptake of the compound than in amelanotic melanoma, HeLa, or nonpigmented human diploid cells in culture. The significance of these findings is discussed in relation to the potential use of the drug as a radiosensitizer in selected human tumors.
Dispersion polymerization of acrylamide: Part II. 2,2?-Azobisisobutyronitrile initiator (1999)

Dispersion polymerization of acrylamide in tert-butyl alcohol (TBA)-water media (TBA ⩾ 50 vol %) using poly(vinyl methyl ether) (PVME) as the stabilizer and 2,2′-azobisisobutyronitrile (AIBN) as the initiator at 50°C has been studied. The conversion-time curve shows autoacceleration taking place from the very early stage of the reaction (measured from 4% conversion level). Molecular weight increases with conversion indicating that the gel effect is operative. This suggests that a major part (if not the whole) of the polymerization occurs in the particle phase. The effects of the concentrations of the stabilizer, the initiator, the monomer, and the solvent composition on particle size have been explained on the basis of particle phase polymerization. The feeding of the particles by the monomer presumably occurs through the solvent channels of the swollen particles. The swelling data of polyacrylamide films in various TBA-water mixtures are given. The similarity and differences between the AIBN and ammonium persulfate (APS) initiated systems (published earlier by us) have been discussed. In general, particles are more polydisperse and bigger in the former case than in the latter. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 493–499, 1999
Stability of Myoglobin: A Model for the Folding of Heme Proteins (1994)

Factors governing the stability of sperm whale, pig, and human metmyoglobin were examined by (1) measuring guanidinium chloride induced unfolding of apoglobins containing 22 replacements at positions 29(B10), 43(CD1), 64(E7), 68(E11), and 107(G8), (2) determining the rates of hemin loss from the recombinant holoproteins, and (3) estimating constitutive expression levels of the corresponding genes in Escherichia coli TB-1 cells. The denaturant titrations were analyzed in terms of a two-step unfolding reaction, N(native apoprotein)-->I(intermediate)-->U(unfolded), in which the intermediate is visualized by an increase in tryptophan fluorescence emission. Two key conclusions were reached. First, high rates of hemin loss are not necessarily correlated with unstable globin structures and vice versa. In general, both rates of hemin loss and the equilibrium constants for apoprotein unfolding must be determined in order to understand the overall stability of heme proteins and to predict the efficiency of their expression. Second, polar residues in the distal pocket cause marked decreases in the overall stability of apomyoglobin. Removal of hemin from V68N and L29N sperm whale myoglobins produces the molten globular I state at pH 7, 25 degrees C, without addition of denaturant. In contrast, the H64L and H64F mutations produce apoproteins which are 10-30 times more stable than wild-type apoglobin. The latter results show that protein stability is sacrificed in order to have the distal histidine (H64) present to increase O2 affinity and inhibit autooxidation.
Controllable in vivo hyperthermia effect induced by pulsed high intensity focused ultrasound with low duty cycles (2012)

High intensity focused ultrasound (HIFU)-induced hyperthermia is a promising tool for cancer therapy. Three-dimensional nonlinear acoustic-bioheat transfer-blood flow-coupling model simulations and in vivo thermocouple measurements were performed to study hyperthermia effects in rabbit auricular vein exposed to pulsed HIFU (pHIFU) at varied duty cycles (DCs). pHIFU-induced temperature elevations are shown to increase with increasing DC. A critical DC of 6.9% is estimated for temperature at distal vessel wall exceeding 44 °C, although different tissue depths and inclusions could affect the DC threshold. The results demonstrate clinic potentials of achieving controllable hyperthermia by adjusting pHIFU DCs, while minimizing perivascular thermal injury.
Determination of nucleic acid sequence homologies and relative concentrations by a dot hybridization procedure (1979)

A dot hybridization method is presented for rapidly determining the relative concentrations of nucleic acids in a mixture, as well as the extent of sequence homology between related RNA or DNA species.
Combining static and dynamic defect-tolerance techniques for nanoscale memory systems (2007)

Nanoscale technology promises dramatically increased device density, but also decreased reliability. With bit error rates projected to be as high as 10%, designing a usable nanoscale memory system poses a significant challenge. In particular, we need to bootstrap a sea of unreliable bits into contiguous address ranges which are preferably as large as 4K-byte virtual memory pages. We accomplish this bootstrapping through a combination of dynamic error correction codes within 32-bit blocks and a static defect map which tracks usability of these blocks. The key insight is that statically-determined defect locations can be much more powerful than dynamically correcting for unknown locations, but that defect maps are only practical at a coarse granularity. Using a combination of BCH error correction codes and a Bloom-Filter-based defect map, we achieve a memory efficiency of 60% and 13% for 4K-byte pages at 1% and 10% bit-error rates, respectively.
Transverse mode control of vertical-cavity top-surface-emitting lasers (1993)

Transverse mode characteristics and control for vertical-cavity top-surface-emitting lasers (VCSELs) are discussed. A spatial filtering concept for the control of VCSEL transverse modes that allows over 1.5-mW single TEM/sub 00/ transverse mode emission to be routinely achieved from continuous-wave electrically excited VCSELs is introduced. Without spatial filtering, L-I and V-I kinks are observed.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Observation of rapid Auger recombination in optically excited semiconducting carbon nanotubes (2004)

Time-resolved fluorescence measurements of single-walled carbon nanotubes (SWNTs) reveal rapid electron-hole pair annihilation when multiple electron-hole pairs are present in a nanotube. The process can be understood as Auger recombination with a rate of $\ensuremath{\sim}1\phantom{\rule{0.3em}{0ex}}{\mathrm{ps}}^{\ensuremath{-}1}$ for just two electron-hole pairs in a 380-nm long SWNT. This efficient nonradiative recombination reflects the strong carrier-carrier interactions in the quasi-one-dimensional SWNTs. In addition to affecting nanotube fluorescence, Auger recombination imposes limitations on the sustained electron-hole density achievable within a SWNT.
Effects of cardiac glycosides on 24‐h ambulatory blood pressure in healthy volunteers and patients with heart failure (2001)

Abstract Blood pressure effects of cardiac glycosides in humans have been infrequently reported. Although direct infusion of ouabain or digoxin causes vasoconstriction, indirect effects of cardiac glycosides may have the opposite effect, owing to changes in sympatho‐vagal balance. This paper summarises three studies on the effects of cardiac glycosides on circadian blood pressure, utilizing automatic 24‐h ambulatory blood pressure measurement (ABPM). In healthy volunteers, 10 days of oral digoxin or digitoxin caused decreases in diastolic blood pressure and heart rate during overnight sleep. No effect was detectable during daytime activities. In patients with heart failure (NYHA stage II), 7 days of oral digoxin also caused a decrease in diastolic blood pressure but only a small increase in systolic pressure during overnight sleep. Again, no effect was detectable during the day. Cardiac glycosides have significant effects on blood pressure, which only appear during overnight sleep, i.e. a phase when sympathetic background activity is lowest. Regular daytime activities may ‘overwrite’ these effects. Effects of cardiac glycosides on blood pressure may have therapeutic impact, depending on the stage of heart failure and concomitant diseases.
Lost Workdays and Decreased Work Effectiveness Associated With Headache in the Workplace (1997)

Little is known about the impact of different types of headache on lost work time and work effectiveness in the United States. Estimation of the distribution and magnitude of the impact of headache in the workplace is necessary before workplace interventions can be developed. During 1993 and 1994 in Baltimore County, Maryland, study subjects were contacted by random-digit dialing and interviewed by telephone about their headaches. Headache diagnoses were assigned using International Headache Society criteria for migraine and episodic tension-type headache. Measures of workplace impact were derived based on self-reports of missing work because of headache and frequency and magnitude of reduced work level because of headache. Of the 13,343 respondents, 9.4% reported missing work more than rarely because of headache, 31% reported that their work level was reduced more than rarely by headache, and 9.2% reported that their work level was reduced more than 50% by headaches during work. In accounting for both actual lost workdays and reduced effectiveness at work, individuals lost the equivalent of 4.2 days per year because of headache. Of the 9922 annual estimated actual lost workdays because of headache, 57% were due to migraine and 43% were due to tension-type and other headache types. Of the 23,287 annual estimated reduced effectiveness workday equivalents, 64% were due to tension-type and other headache types, and 36% were due to migraine. Headache type, headache severity, and education level were each independent predictors of workplace impact of headache. Subjects with migraine headache were much more likely to report actual lost workdays because of headache, whereas tension-type and other headache types accounted for a large proportion of decreased work effectiveness because of headache. The results have implications regarding the control of indirect costs in the workplace because of headache, and on workplace-based treatment and prevention programs.
Brokered graph-state quantum computation (2006)

Using the &lt;em&gt;graph-state&lt;/em&gt; approach to quantum computation, one can avoid the need for complex array nanostructures in which quantum bits (qubits) interact directly. Instead one can employ simple 'atom-like' nanostructures, coupled over macroscopic distances via optical emissions. Here, we describe a robust coupling procedure, which we call &lt;em&gt;brokering&lt;/em&gt;, that is especially well suited to nanostructures bearing both nuclear and electron spins. We describe how this approach can be implemented with N−V centre materials.
<title>Synchrotron beamlines for x-ray lithography</title> (1994)

Louisiana State University established the J. Bennett Johnston, Sr., Center for Advanced Microstructures and Devices (CAMD). Designed and constructed by the Brobeck Division of Maxwell Laboratories, the CAMD synchrotron light source is the first electron storage ring to be built by a commercial company in the United States. The synchrotron x-ray radiation generated at CAMD is an extremely useful exposure source for both thin and thick film lithography. Passing through a beamline containing two plane mirrors, the synchrotron light is used to expose thin resists for lithography of patterns with feature sizes of 0.25 micron and smaller. Two thick-resist beamlines, one using a single aspheric (collimating) mirror and one using a plane mirror, provide the higher flux photons required for miniaturization in silicon to produce microscopic mechanical devices including gears, motors, filters, and valves.
Localized myocardial responses to stimulation of small cardiac branches of the vagus (1975)

Direct electrical excitation of small cardiac branches from the thoracic vagus elicited highly localized and differential responses from individualized segments of the myocardium. For example, small nerves from the vagus at the level of the superior pulmonary veins frequently induced moderate inhibition in contractile force of the ipsilateral atrium with little or no influences elsewhere. Branches from more rostral levels of the thoracic vagus induced changes in atrial contractility, with or without changes in sinoauricular (SA) nodal discharge rates, and often with partial or complete artioventricular (AV) nodal blockade.Excitation of individual, small vagal branches sometimes initiated acceleration in artrial rate and augmentation in atrial contractile force concurrently with complete AV nodal blockade. The negative dromotropic response was eliminated by atropine, leaving only the positive chronotropic and inotropic changes, thus revealing the intermingling of both sympathetic and parasympathetic components even in these small branches. There are frequently in excess of 20 small branches from the vagal trunk between the level of the caudal cervical ganglion and the superior pulmonary vein on each side which will induce highly selective changes in cardiac function upon stimulation. Inhibitory branches are particularly concentrated in the region of the recurrent laryngeal nerve on either side.
Improved diagnosis of Becker muscular dystrophy by dystrophin testing (1989)

We assessed the quantity (relative cellular abundance) and quality (approximate molecular weight) of dystrophin in muscle biopsies from 97 patients with a diagnosis of possible Becker muscular dystrophy. Fifty-four (all male) had dystrophin abnormalities and were deemed to have true Becker muscular dystrophy. The other 43 patients (14 female, 29 male) had no detectable dystrophin abnormalities. Of the dystrophin-verified Becker dystrophy patients, 35% (19/54) had a family history consistent with X-linked recessive inheritance. On the other hand, none of the 43 patients with apparently normal dystrophin had a clear X-linked family history, suggesting that few of these 43 actually had a form of Becker dystrophy. The data suggest that of all patients with a clinical picture consistent with Becker dystrophy but no family history, about 60% will be true Becker patients. The correlation of both the biochemical and clinical data suggests that Duchenne/Becker dystrophy can be divided into 4 clinically useful categories: Duchenne dystrophy (wheelchair at about age 11 years; dystrophin quantity less than 3% of normal); severe Becker dystrophy (wheelchair age 13 to 20 years; dystrophin 3% to 10%); and moderate/mild Becker dystrophy (wheelchair greater than 20 years; dystrophin quantity greater than or equal to 20%). Given the observed clinical variability of Becker dystrophy, it appears that dystrophin analysis is required for accurately distinguishing between Becker dystrophy and clinically similar autosomal recessive myopathies.