gebhart/patrepeval huggingface dataset:
Characterization of a Pathway for Ciliary Neurotrophic Factor Signaling to the Nucleus (1993)

Components of a signaling pathway that couples the ciliary neurotrophic factor (CNTF) receptor to induction of transcription were identified. CNTF stimulated the tyrosine phosphorylation of p91, a protein implicated in interferon signaling pathways, and of two proteins that are distinct but related to p91. Tyrosine-phosphorylated p91 translocated to the nucleus, where p91 and p91-related proteins bound to a DNA sequence found in promoters of genes responsive to CNTF. This DNA sequence, when inserted upstream of a reporter gene, conferred a transcriptional response to CNTF. A pathway that transduces interferon signals may therefore have a more general function in the propagation of responses to certain neurotrophic factors.
Phosphotyrosine Signaling Networks in Epidermal Growth Factor Receptor Overexpressing Squamous Carcinoma Cells (2005)

Overexpression and enhanced activation of the epidermal growth factor (EGF) receptor are frequent events in human cancers that correlate with poor prognosis. Anti-phosphotyrosine and anti-EGFr affinity chromatography, isotope-coded muLC-MS/MS, and immunoblot methods were combined to describe and measure signaling networks associated with EGF receptor activation and pharmacological inhibition. The squamous carcinoma cell line HN5, which overexpresses EGF receptor and displays sustained receptor kinase activation, was used as a model system, where pharmacological inhibition of EGF receptor kinase by erlotinib markedly reduced auto and substrate phosphorylation, Src family phosphorylation at EGFR Y845, while increasing total EGF receptor protein. Diverse sets of known and poorly described functional protein classes were unequivocally identified by affinity selection, comprising either proteins tyrosine phosphorylated or complexed therewith, predominantly through EGF receptor and Src family kinases, principally 1) immediate EGF receptor signaling complexes (18%); 2) complexes involved in adhesion and cell-cell contacts (34%); and 3) receptor internalization and degradation signals. Novel and known phosphorylation sites could be located despite the complexity of the peptide mixtures. In addition to interactions with multiple signaling adaptors Grb2, SHC, SCK, and NSP2, EGF receptors in HN5 cells were shown to form direct or indirect physical interactions with additional kinases including ACK1, focal adhesion kinase (FAK), Pyk2, Yes, EphA2, and EphB4. Pharmacological inhibition of EGF receptor kinase activity by erlotinib resulted in reduced phosphorylation of downstream signaling, for example through Cbl/Cbl-B, phospholipase Cgamma (PLCgamma), Erk1/2, PI-3 kinase, and STAT3/5. Focal adhesion proteins, FAK, Pyk2, paxillin, ARF/GIT1, and plakophillin were down-regulated by transient EGF stimulation suggesting a complex balance between growth factor induced kinase and phosphatase activities in the control of cell adhesion complexes. The functional interactions between IGF-1 receptor, lysophosphatidic acid (LPA) signaling, and EGF receptor were observed, both direct and/or indirectly on phospho-Akt, phospho-Erk1/2, and phospho-ribosomal S6.
The human G1m1 allotype associates with CD4+ T-cell responsiveness to a highly conserved IgG1 constant region peptide and confers an asparaginyl endopeptidase cleavage site (2011)

The human G1m1 allotype comprises two amino acids, D12 and L14, in the CH3 domain of IGHG1. Although the G1m1 allotype is prevalent in human populations, ~40% of Caucasiods are homozygous for the nG1m1 allotype corresponding to E12 and M14. Peptides derived from the G1m1 region were tested for their ability to induce CD4+ T-cell proliferative responses in vitro. A peptide immediately downstream from the G1m1 sequence was recognized by CD4+ T cells in a large percentage of donors (peptide CH3₁₅-₂₉). CD4+ T-cell proliferative responses to CH3₁₅-₂₉ were found at an increased frequency in nG1m1 homozygous donors. Homozygous nG1m1 donors possessing the HLA-DRB1*07 allele displayed the highest magnitudes of proliferation. CD4+ T cells from donors homozygous for nG1m1 proliferated to G1m1-carrying Fc-fragment proteins, whereas CD4+ T cells from G1m1 homozygous donors did not. The G1m1 sequence creates an enzymatic cleavage site for asparaginyl endopeptidase in vitro. Proteolytic activity at D12 may allow the presentation of the CH3₁₅-₂₉ peptide, which in turn may result in the establishment of tolerance to this peptide in G1m1-positive donors. Homozygous nG1m1 patients may be more likely to develop CD4+ T-cell-mediated immune responses to therapeutic antibodies carrying the G1m1 allotype.
Elastomeric Microchip Electrospray Emitter for Stable Cone-Jet Mode Operation in the Nanoflow Regime (2008)

Despite widespread interest in combining laboratory-on-a-chip technologies with mass spectrometry (MS)-based analyses, the coupling of microfluidics to electrospray ionization (ESI)-MS remains challenging. We report a robust, integrated poly(dimethylsiloxane) microchip interface for ESI-MS using simple and widely accessible microfabrication procedures. The interface uses an auxiliary channel to provide electrical contact for the stable cone-jet electrospray without sample loss or dilution. The electric field at the channel terminus is enhanced by two vertical cuts that cause the interface to taper to a line rather than to a point, and the formation of a small Taylor cone at the channel exit ensures subnanoliter postcolumn dead volumes. Cone-jet mode electrospray was demonstrated for up to 90% aqueous solutions and for extended durations. Comparable ESI-MS sensitivities were achieved using both microchip and conventional fused silica capillary emitters, but stable cone-jet mode electrosprays could be established over a far broader range of flow rates (from 50-1000 nL/min) and applied potentials using the microchip emitters. This attribute of the microchip emitter should simplify electrospray optimization and make the stable electrospray more resistant to external perturbations.
Polyisobutylene: A most unusual polymer (2008)

Abstract The influence of molecular weight, M , on the fragility and fast dynamics in polyisobutylene (PIB) was studied using dielectric and mechanical relaxation spectroscopies, calorimetry, and Raman spectroscopy. The measurements indicate a decrease in fragility with increasing M for shorter chains, in the range of M where T g is M ‐dependent. Such behavior is not observed for other polymers and is at odds with traditional theoretical models that predict an increase in fragility with chain length. These results confirm the unusual character of PIB, as evident in various properties including extremely low gas permeability, a low fragility, and a segmental relaxation spectrum much broader than expected for a low‐fragility material. The reason for this anomalous behavior remains unclear, but might be related to the symmetric structure of the PIB repeat unit, together with comparable flexibility of both structural components, the backbone and side groups. © 2008 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 46: 1390–1399, 2008
Glycosyltransferase‐programmed stereosubstitution (GPS) to create HCELL: engineering a roadmap for cell migration (2009)

During evolution of the vertebrate cardiovascular system, the vast endothelial surface area associated with branching vascular networks mandated the development of molecular processes to efficiently and specifically recruit circulating sentinel host defense cells and tissue repair cells at localized sites of inflammation/tissue injury. The forces engendered by high-velocity blood flow commensurately required the evolution of specialized cell surface molecules capable of mediating shear-resistant endothelial adhesive interactions, thus literally capturing relevant cells from the blood stream onto the target endothelial surface and permitting subsequent extravasation. The principal effectors of these shear-resistant binding interactions comprise a family of C-type lectins known as 'selectins' that bind discrete sialofucosylated glycans on their respective ligands. This review explains the 'intelligent design' of requisite reagents to convert native CD44 into the sialofucosylated glycoform known as hematopoietic cell E-/L-selectin ligand (HCELL), the most potent E-selectin counter-receptor expressed on human cells, and will describe how ex vivo glycan engineering of HCELL expression may open the 'avenues' for the efficient vascular delivery of cells for a variety of cell therapies.
GMSK digital portable transceiver using 32 kbps ADM (1983)

Digital mobile radio transmission techniques and integrated circuit devices have been developed for application to a digital portable transceiver utilizing narrowband GMSK modulation. Design and performance of a quadrature-type GMSK modulator, and a single chip coherent demodulator are described. For mitigating slow fading, a switching diversity using jitter detection type sensor is proposed and shown to be effective. An experimental portable transceiver, developed to examine the hardware feasibility, is shown.
EFFECT OF TIMBER DENSITY ON RETENTION OF WOOD PRESERVATIVES (1993)

The amount of CCA fixed in the southern pine treated with CCA have been eval-uated.The conclusions from these experiments are:with the timber density increases,the reten-tion based on weight/weight will decrease,but the retention based on weight/volume will bealmost constant.Retention by weight would be more influential than by volume.
Tumor Cell-Specific BRCA1 and RASSF1A Hypermethylation in Serum, Plasma, and Peritoneal Fluid from Ovarian Cancer Patients (2004)

Because existing surgical and management methods can consistently cure only early-stage ovarian cancer, novel strategies for early detection are required. Silencing of tumor suppressor genes such as p16INK4a, VHL, and hMLH1 have established promoter hypermethylation as a common mechanism for tumor suppressor inactivation in human cancer and as a promising target for molecular detection in bodily fluids. Using sensitive methylation-specific PCR, we screened matched tumor, preoperative serum or plasma, and peritoneal fluid (washes or ascites) DNA obtained from 50 patients with ovarian or primary peritoneal tumors for hypermethylation status of the normally unmethylated BRCA1 and RAS association domain family protein 1A tumor suppressor genes. Hypermethylation of one or both genes was found in 34 tumor DNA (68%). Additional examination of one or more of the adenomatous polyposis coli, p14ARF, p16INK4a, or death associated protein-kinase tumor suppressor genes revealed hypermethylation in each of the remaining 16 tumor DNA, which extended diagnostic coverage to 100%. Hypermethylation was observed in all histologic cell types, grades, and stages of ovarian tumor examined. An identical pattern of gene hypermethylation was found in the matched serum DNA from 41 of 50 patients (82% sensitivity), including 13 of 17 cases of stage I disease. Hypermethylation was detected in 28 of 30 peritoneal fluid DNA from stage IC-IV patients, including 3 cases with negative or atypical cytology. In contrast, no hypermethylation was observed in nonneoplastic tissue, peritoneal fluid, or serum from 40 control women (100% specificity). We conclude that promoter hypermethylation is a common and relatively early event in ovarian tumorigenesis that can be detected in the serum DNA from patients with ovary-confined (stage IA or B) tumors and in cytologically negative peritoneal fluid. Analysis of tumor-specific hypermethylation in serum DNA may enhance early detection of ovarian cancer.
A Vulnerable Justice: Finality of Civil Judgments in China (2019)

This Article challenges the finality of a civil judgement in the People’s Republic of China, i.e., the so-called system in which a decision by the court of second instance is final (liangshen zhongshen zhi) (the “regular trial system”). There is a widespread conception among legal scholars, judges and lawyers that judicial finality can be obtained in China, because under the regular trial system litigants have only two chances to have their disputes heard by the court. However, the opposite view, once held by this author, is that, from a Western perspective, finality simply does not exist in China. A Chinese court may have endless chances, without any time limit, to decide a case under the Procedure of Trial Supervision (shenpan ]iandu chengxu) (“the Supervision Procedure” or “supervising system”). The analysis this author offers in this Article demonstrates that, contrary to the popular conception in Mainland China or to the view made from a Western perspective, an extreme conclusion either way on the issue of finality is superficial. As a matter of fact, “judicial finality” itself is a complicated or even misleading term under the Chinese legal system. In determining the meaning of finality, one has to take into account the actual operation of the entire Chinese system instead of perceiving it narrowly based on the written law. Most importantly, particular attention should be paid to those factors affecting the implementation of law, such as Chinese legal culture and the political structure. Accordingly, this Article offers two alternative but decisive rules on the finality issue. These rules should be considered when a Chinese civil judgement is to be recognized and enforced in a foreign jurisdiction.
Impaired insulin secretion increases the risk of Alzheimer disease (2008)

In this longitudinal study, impaired acute insulin response at midlife was associated with an increased risk of Alzheimer disease (AD) up to 35 years later suggesting a causal link between insulin metabolism and the pathogenesis of AD.
Trehalose Metabolism: From Osmoprotection to Signaling (2009)

Trehalose is a non-reducing disaccharide formed by two glucose molecules. It is widely distributed in Nature and has been isolated from certain species of bacteria, fungi, invertebrates and plants, which are capable of surviving in a dehydrated state for months or years and subsequently being revived after a few hours of being in contact with water. This disaccharide has many biotechnological applications, as its physicochemical properties allow it to be used to preserve foods, enzymes, vaccines, cells etc., in a dehydrated state at room temperature. One of the most striking findings a decade ago was the discovery of the genes involved in trehalose biosynthesis, present in a great number of organisms that do not accumulate trehalose to significant levels. In plants, this disaccharide has diverse functions and plays an essential role in various stages of development, for example in the formation of the embryo and in flowering. Trehalose also appears to be involved in the regulation of carbon metabolism and photosynthesis. Recently it has been discovered that this sugar plays an important role in plant-microorganism interactions.
Size and composition tunable Ag–Au alloy nanoparticles by replacement reactions (2007)

10.1088/0957-4484/18/24/245605
Grazing incidence interferometry applied to the measurement of cylindrical surfaces (1995)

Usually, rough surfaces cannot be measured by interferometric methods because the wavefronts are disturbed by speckle noise. This problem can be overcome by an increase of the test wavelength. One way to increase the effective wavelength is to use grazing incidence interferometry. We suggest an interferometer specifically adapted for the measurement of cylinders or tubes. Reference and object wavefront are generated using problem-specific computer-generated holograms as beamsplitters. The method can be extended to other geometries. We introduce the principle and show first experimental results.
Synthesis of 2-Ethylthio-6-(3-hydroxy- 1,2-O-isopropylidenepropyl)pteridin- 4(3H)-one (2000)

A strategy has been described for the synthesis of 2-ethylthio-6-(3hydroxy-1,2-O-isopropylidenepropyl)pteridin-4(3H)-one, which can be used as a useful intermediate for the conversion of neopterin to biopterin.Pterin derivatives are natural materials biosynthesized from guanosinetriphosphate (GTP) in biological systems and can be isolated in all living things.Biopterin is reported as 6-(D-erythro-1,2dihydroxypropyl)pterin isolated from human urine. 1 Its biosynthetic pathways have drawn attention since they play an important role in amino acid hydroxylation as a tetrahydroform.The atypical phenylketouria
Brain-Specific Disruption of the eIF2α Kinase PERK Decreases ATF4 Expression and Impairs Behavioral Flexibility (2012)

Translational control depends on phosphorylation of eIF2α by PKR-like ER kinase (PERK). To examine the role of PERK in cognitive function, we selectively disrupted PERK expression in the adult mouse forebrain. In the prefrontal cortex (PFC) of PERK-deficient mice, eIF2α phosphorylation and ATF4 expression were diminished and were associated with enhanced behavioral perseveration, decreased prepulse inhibition, reduced fear extinction, and impaired behavioral flexibility. Treatment with the glycine transporter inhibitor SSR504734 normalized eIF2α phosphorylation, ATF4 expression, and behavioral flexibility in PERK-deficient mice. Moreover, the expression levels of PERK and ATF4 were reduced in the frontal cortex of human patients with schizophrenia. Together, our findings reveal that PERK plays a critical role in information processing and cognitive function and that modulation of eIF2α phosphorylation and ATF4 expression may represent an effective strategy for treating behavioral inflexibility associated with several neurological disorders such as schizophrenia.
The Use of pH to Influence Regio- and Chemoselectivity in the Asymmetric Aminohydroxylation of Styrenes (2003)

[reaction: see text] The pH-controlled Sharpless asymmetric aminohydroxylation (AA) of styrenes provides 1-aryl-2-amino ethanols (regioisomer B) with high enantio-, chemo-, and regioselectivity. As existing AA protocols typically give regioisomer A as the major reaction product when using carbamate nitrogen sources, this method is a convenient alternative for the selective production of regioisomer B.
Spatial Motion Constraints Using Virtual Fixtures Generated by Anatomy (2007)

This paper describes a spatial-motion-constraints-generation approach for a human-machine collaborative surgical-assistant system from registered computer tomography models. We extend constrained optimization formulation incorporating task goals, anatomy-based constraints, "no fly zones," etc. We use a fast potential-collision-constraint-detection method based on a 3-D surface model and covariance tree data structure. These boundary constraints, along with task behaviors and joint limits, serve as constraint conditions for constrained robot control. We are able to follow a complex path inside a human skull, phantom represented by a surface model composed of 99 000 vertices and 182 000 triangles in real time. Our approach enables real-time task-based control of a surgical robot in a precise interactive minimally invasive surgery task. We illustrate our approach based on two example tasks which are analogous to the procedures in endoscopic sinus surgery, and analyze the user's performance on both teleoperation and cooperative control for one of the example tasks. The experimental results show that a robotic assistant employing our approach on spatial motion constraints can assist the user in skilled manipulation tasks, while maintaining desired properties. Our approach is equally applicable to teleoperative and cooperative controlled robots
Chemiluminescent 10‐methyl‐acridinium‐9‐(N‐sulphonylcarboxamide) salts. Synthesis and kinetics of light emission (1991)

10-Methyl-acridinium-9-(N-sulphonylcarboxamide) salts are prepared via acylation of sulphonamides with acridine-9-carboxylic acid chloride and subsequent N-alkylation with methyl triflate. Substituents on the sulphonamide component were varied to show the effect of steric and electronic factors on the kinetics of light output. The lifetime of the chemiluminescence light output ranged from 1 to 50 seconds for the 15 compounds reported. The long-term stability of the new compounds was superior to the phenyl ester counterparts.
[Supraventricular tachycardia due to retrograde decremental conduction over accessory pathways]. (1992)

The electrophysiologic study is essential for the differential diagnosis of the supraventricular tachycardias with a R-P' interval longer than P'-R interval where the incidence of tachycardiomyopathy is high in this group of patients. Surgery provides definitive cure of those patients leading to the regression of the signs and symptoms of heart failure.
Peroxisome Proliferator–Activated Receptor (PPAR)α Activation Increases Adiponectin Receptors and Reduces Obesity-Related Inflammation in Adipose Tissue (2005)

We examined the effects of activation of peroxisome proliferator-activated receptor (PPAR)alpha, PPARgamma, and both of them in combination in obese diabetic KKAy mice and investigated the mechanisms by which they improve insulin sensitivity. PPARalpha activation by its agonist, Wy-14,643, as well as PPARgamma activation by its agonist, rosiglitazone, markedly improved insulin sensitivity. Interestingly, dual activation of PPARalpha and -gamma by a combination of Wy-14,643 and rosiglitazone showed increased efficacy. Adipocyte size in Wy-14,643-treated KKAy mice was much smaller than that of vehicle- or rosiglitazone-treated mice, suggesting that activation of PPARalpha prevents adipocyte hypertrophy. Moreover, Wy-14,643 treatment reduced inflammation and the expression of macrophage-specific genes in white adipose tissue (WAT). Importantly, Wy-14,643 treatment upregulated expression of the adiponectin receptor (AdipoR)-1 and AdipoR2 in WAT, which was decreased in WAT of KKAy mice compared with that in nondiabetic control mice. Furthermore, Wy-14,643 directly increased expression of AdipoRs and decreased monocyte chemoattractant protein-1 expression in adipocytes and macrophages. Rosiglitazone increased serum adiponectin concentrations and the ratio of high molecular weight multimers of adiponectin to total adiponectin. A combination of rosiglitazone and Wy-14,643 increased both serum adiponectin concentrations and AdipoR expression in WAT. These data suggest that PPARalpha activation prevents inflammation in WAT and that dual activation of PPARalpha and -gamma enhances the action of adiponectin by increasing both adiponectin and AdipoRs, which can result in the amelioration of obesity-induced insulin resistance.
Kinetic Mechanism of Kinesin Motor Domain (1995)

The kinetic mechanism of the human kinesin ATPase motor domain K379, expressed in Escherichia coli, was determined by transient and steady-state kinetic studies. The steps in nucleotide binding were measured using the fluorescent substrate analogues, methylanthraniloyl ATP (mant-ATP) and mant-ADP. Both nucleotides gave a two-step fluorescence signal, an increase followed by a decrease, which indicates that two isomerizations are induced by nucleotide binding. The ATPase mechanism is fitted by a six-step reaction: [formula: see text] where, T, D, and P refer to nucleotide triphosphate, nucleotide diphosphate, and inorganic phosphate, respectively; K(T) and K(D) are states in rapid equilibrium with the free nucleotide. A set of kinetic constants for 20 degrees C 50 mM NaCl is K1 = 2 x 10(4) M-1, k2 = 200 s-1, k3 = 9 s-1, k5 = 0.01 s-1, and K6 = 2 x 10(-5) M. Values of K1 and K6 are estimates for mant-ATP and mant-ADP, respectively. ADP dissociation is the rate-limiting step. The rate constant for a decrease in fluorescence for the transitions from the high fluorescence K.T state to the low fluorescence K.D state is equal to k3, the rate constant of the hydrolysis step measured by quench flow experiments. The decrease could occur in step 3 or step 4 if k4 > k3.(ABSTRACT TRUNCATED AT 250 WORDS)