gebhart/patrepeval huggingface dataset:
Transcriptional activation by the acidic domain of Vmw65 requires the integrity of the domain and involves additional determinants distinct from those necessary for TFIIB binding. (1993)

In this work we have examined the requirements for activity of the acidic domain of Vmw65 (VP16) by deletion and site-directed mutagenesis of the region in the context of GAL4 fusion proteins. The results indicate that the present interpretation of what actually constitutes the activation domain is not correct. We demonstrate, using a promoter with one target site which is efficiently activated by the wild-type (wt) fusion protein, that amino acids distal to residue 453 are critical for activity. Truncation of the domain or substitution of residues in the distal region almost completely abrogate activity. However, inactivating mutations within the distal region are complemented by using a promoter containing multiple target sites. Moreover, duplication of the proximal region, but not the distal region, restores the ability to activate a promoter with a single target site. These results indicate some distinct qualitative difference between the proximal and distal regions. We have also examined the binding of nuclear proteins to the wt domain and to a variant with the distal region inactivated by mutation. The lack of activity of this variant is not explained by a lack of binding of TFIIB, a protein previously reported to be the likely target of the acidic domain. Therefore some additional function is involved in transcriptional activation by the acid domain, and determinants distinct from those involved in TFIIB binding are required for this function. Analysis of the total protein profiles binding to the wt and mutant domains has demonstrated the selective binding to the wt domain of a 135-kDa polypeptide, which is therefore a candidate component involved in this additional function. This is the first report to provide evidence for the proposal of a multiplicity of interactions within the acidic domain, by uncoupling requirements for one function from those for another.
Drug Absorption from Large Intestine: Physicochemical Factors Governing Drug Absorption. (1994)

Profiles of absorption versus drug molecular weight and absorption versus drug lipophilicity were investigated in both the small and large intestines of rats by an in situ loop method. The absorption-molecular weight profiles examined using different-sized polyethylene glycols (PEGs) were different between the small and large intestines; the large-intestinal absorption of PEGs with molecular weights larger than 300 was poor, while PEGs with molecular weights up to 600 were relatively well absorbed in the small intestine. It is suggested that the paracellular route for drug penetration in the large intestine is restricted more than in the small intestine. The absorption-lipophilicity profiles were also examined in various regions (loops of 6 cm) of rat intestine using three acylsalicylic acids, acetyl-, propionyl- and butyrylsalicylic acids. The absorption rates of the acylsalicylic acids were different in the intestinal regions: the jejunum > the ileum > the colon > the rectum. In each region, the absorption rate increased with the drug lipophilicity. However, it was shown that the absorption rates in the small intestine tended to reach a ceiling at the high lipophilicity. To confirm this tendency, the absorption rates of acetaminophen and indomethacin were compared in the four intestinal regions. The absorption rates of highly lipophilic indomethacin were similar in the large and small intestines, while intermediately lipophilic acetaminophen was more rapidly absorbed in the small intestine than in the large intestine. A thicker unstirred water layer adjacent to the small-intestinal mucosa would be one of the factors which cause such varying absorption-lipophilicity profiles.
NH[sub 3] Interaction with Catalytically Modified Nano-WO[sub 3] Powders for Gas Sensing Applications (2003)

Nanocrystalline powders of WO3, pure and with catalytic additives such as copper and vanadium, for ammonia gas detection are analyzed in detail. Material was annealed at two different temperatures (400 and 700degreesC) and catalytic additives were introduced in two different concentrations (0.2 and 2%) in order to study the gas sensor performances of these WO3-based materials. Crystalline structure characterization shows that a mixture of triclinic and monoclinic structure was present in the materials analyzed. Additive characterization reveals that catalytic metals were located as cations in the matrix lattice. Thick-film gas sensors based on pure WO3 show an abnormal sensor response, which is attributed to a complex process originated by the oxidation of ammonia to NO. On the other hand, catalyzed WO3-based gas sensors show a more direct and simple sensor response. Interaction of ammonia with WO3 was studied by diffuse reflectance infrared spectroscopy. Only pure WO3 presented a W=O overtone band decrease and some nitrosil bands. In this case, NH3 would react with the surface oxygen of terminal W=O bonds and would lead to the formation of NO. Catalyzed WO3 avoided this reaction and so the unselective catalytic oxidation of NH3, improving sensor response. Influence of introduced additives on ammonia oxidation and thus on sensor response is discussed. (C) 2003 The Electrochemical Society.
Cross-Linked Random Copolymer Mats As Ultrathin Nonpreferential Layers for Block Copolymer Self-Assembly (2009)

We report the effect of increasing amounts of glycidyl methacrylate (GMA) in random copolymers of P(S-r-MMA-r-GMA) on the formation of nonpreferential mats for the assembly of P(S-b-MMA) block copolymers. Increasing the GMA concentration in the random copolymer from 1 (PG1) to 4 (PG4) mole % increased the cross-linking efficiency and reduced the effective minimum thickness of the cross-linked mat for perpendicular alignment of P(S-b-MMA) from approximately 6 nm to approximately 2 nm. The compositional window (so-called perpendicular window) of PG4 was defined for both symmetric and asymmetric P(S-b-MMA). Compared to PG1, incorporation of higher amount of polar comonomer (GMA) in PG4 shifted the perpendicular window toward higher styrene fraction as a result of the increased polarity. The defined perpendicular window for P(S-r-MMA-r-GMA) is equally applicable for random copolymers prepared by both controlled living and classical free-radical polymerizations.
Human CD59 Inhibitor Sensitizes Rituximab-Resistant Lymphoma Cells to Complement-Mediated Cytolysis (2011)

Rituximab efficacy in cancer therapy depends in part on induction of complement-dependent cytotoxicity (CDC). Human CD59 (hCD59) is a key complement regulatory protein that restricts the formation of the membrane attack complex, thereby inhibiting induction of CDC. hCD59 is highly expressed in B-cell non-Hodgkin's lymphoma (NHL), and upregulation of hCD59 is an important determinant of the sensitivity of NHL cells to rituximab treatment. Here, we report that the potent hCD59 inhibitor rILYd4 enhances CDC in vitro and in vivo, thereby sensitizing rituximab-resistant lymphoma cells and primary chronic lymphocytic leukemia cells (CLL) to rituximab treatment. By defining pharmcokinetic/pharmacodynamic profiles of rILYd4 in mice, we showed that by itself rILYd4 does not adversely mediate in vivo hemolysis of hCD59-expressing erythrocytes. Increasing expression levels of the complement regulators CD59 and CD55 in rituximab-resistant cells occur due to selection of preexisting clones rather than de novo induction of these proteins. Moreover, lymphoma cells overexpressing CD59 were directly responsible for the resistance to rituximab-mediated CDC therapy. Our results rationalize the use of rILYd4 as a therapeutic adjuvant for rituximab treatment of rituximab-resistant lymphoma and CLL. Furthermore, they suggest that preemptive elimination of CD59-overexpressing subpopulations along with rituximab treatment may be a useful approach to ablate or conquer rituximab resistance.
Effect of Solvent-Deposition on Spironolactone Crystal Form (1985)

Spironolactone deposited from acetone and methanol onto glass particles in the forms obtained on recrystallisation, but adopted different forms on lactose due to the effects of solvent on the matrix.Solvent-deposition, the precipitation of solute onto a matrix surface by evaporation, is an established process in the manufacture of solid dosage forms, and is commonly used as a mixing technique. As reports of comprehensive studies on the effects of deposition systems on drug particle size, dissolution rate and stability had noted the occurrence of polymorphic behaviour1,2, it was considered of interest to examine whether forms with particular characteristics could be developed on solvent-dsposition. Spironolactone, a steroidal diuretic with variable and dissolution-dependent bioavailability3, was selected for study as it had been found to crystallise from volatile solvents in different forms exhibiting substantially different dissolution rates;4 powdered glass was employed as a model matrix.5This paper was presented in part at the 4th pharmaceutical Technology Conference, Edinburgh, April 1984.
Hydrodynamic Thrombectomy System versus Pulse-Spray Thrombolysis for Thrombosed Hemodialysis Grafts: A Multicenter Prospective Randomized Comparison (2000)

The hydrodynamic thrombectomy system is at least as efficacious and safe as pulse-spray thrombolysis but shortens thrombus treatment time.
miR-205 Expression Promotes Cell Proliferation and Migration of Human Cervical Cancer Cells (2012)

MicroRNAs (miRNAs) are short non-coding RNA regulators that control gene expression mainly through post-transcriptional silencing. We previously identified miR-205 in a signature for human cervical cancer using a deep sequencing approach. In this study, we confirmed that miR-205 expression was frequently higher in human cervical cancer than their matched normal tissue samples. Functionally, we demonstrate that miR-205 promotes cell proliferation and migration in human cervical cancer cells. To further understand the biological roles of miR-205, we performed in vivo crosslinking and Argonaute 2 immunoprecipitation of miRNA ribonucleoprotein complexes followed by microarray analysis (CLIP-Chip) to identify its potential mRNA targets. Applying CLIP-Chip on gain- and loss-of-function experiments, we identified a set of transcripts as potential targets of miR-205. Several targets are functionally involved in cellular proliferation and migration. Two of them, CYR61 and CTGF, were further validated by Western blot analysis and quantification of mRNA enrichment in the Ago2 immunoprecipitates using qRT-PCR. Furthermore, both CYR61 and CTGF were downregulated in cervical cancer tissues. In summary, our findings reveal novel functional roles and targets of miR-205 in human cervical cancer, which may provide new insights about its role in cervical carcinogenesis and its potential value for clinical diagnosis.
Engineering plant oils as high‐value industrial feedstocks for biorefining: the need for underpinning cell biology research (2007)

Plant oils represent renewable sources of long-chain hydrocarbons that can be used as both fuel and chemical feedstocks, and genetic engineering offers an opportunity to create further high-value specialty oils for specific industrial uses. While many genes have been identified for the production of industrially important fatty acids, expression of these genes in transgenic plants has routinely resulted in a low accumulation of the desired fatty acids, indicating that significantly more knowledge of seed oil production is required before any future rational engineering designs are attempted. Here, we provide an overview of the cellular features of fatty acid desaturases, the so-called diverged desaturases, and diacylglycerol acyltransferases, three sets of enzymes that play a central role in determining the types and amounts of fatty acids that are present in seed oil, and as such, the final application and value of the oil. Recent studies of the intracellular trafficking, assembly and regulation of these enzymes have provided new insights to the mechanisms of storage oil production, and suggest that the compartmentalization of enzyme activities within specific regions or subdomains of the ER may be essential for both the synthesis of novel fatty acid structures and the channeling of these important fatty acids into seed storage oils.
Molecular Characterization of Resistance to Mupirocin in Methicillin-Susceptible and -Resistant Isolates of Staphylococcus aureus from Nasal Samples (2004)

A total of 15 of 101 (14.8%) nasal methicillin-resistant Staphylococcus aureus (MRSA) isolates exhibited mupirocin resistance (Mup(r)) compared with 1 of 154 (0.6%) methicillin-susceptible Staphylococcus aureus isolates. A total of 14 (93%) isolates exhibiting high-level Mup(r) belonged to a single clone. Horizontal plasmid transfer and transmission of Mup(r) strains contribute to a high incidence of Mup(r) MRSA at our institution.
Growth factors and growth factor receptors. (1993)

Peptide growth factors and their cell surface-associated receptors are important determinants of normal and pathological growth reactions. Through signal transduction pathways, receptor occupancy triggers the production of intracellular downstream effector molecules which ultimately cause cell proliferation.
Associations between the Complement System and Choroidal Neovascularization in Wet Age-Related Macular Degeneration (2020)

Age-related macular degeneration (AMD) is the leading cause of blindness affecting the elderly in the Western world. The most severe form of AMD, wet AMD (wAMD), is characterized by choroidal neovascularization (CNV) and acute vision loss. The current treatment for these patients comprises monthly intravitreal injections of anti-vascular endothelial growth factor (VEGF) antibodies, but this treatment is expensive, uncomfortable for the patient, and only effective in some individuals. AMD is a complex disease that has strong associations with the complement system. All three initiating complement pathways may be relevant in CNV formation, but most evidence indicates a major role for the alternative pathway (AP) and for the terminal complement complex, as well as certain complement peptides generated upon complement activation. Since the complement system is associated with AMD and CNV, a complement inhibitor may be a therapeutic option for patients with wAMD. The aim of this review is to (i) reflect on the possible complement targets in the context of wAMD pathology, (ii) investigate the results of prior clinical trials with complement inhibitors for wAMD patients, and (iii) outline important considerations when developing a future strategy for the treatment of wAMD.
The swine Ig heavy chain locus has a single JH and no identifiable IgD (1996)

Sequence analysis of 84 V region cDNAs expressed with IgM, IgG and IgA from both adult and newborn swine suggested that their JH segments had been derived from the same germline JH. Only a single hybridizing JH segment could be identified in genomic DNA, in a JH-C mu cosmid and in a Sacl fragment of the cosmid extending 5 kb 5' of the EnhH. The single germline JH segment mapped 6 kb 5' to C mu. This JH had a sequence identical to 40 of 42 JH segments expressed in a newborn piglet and 25 of 42 expressed by adult swine. None of the 19 JH segments which varied from the germline sequence were identical to each other and half of the nucleotide changes were silent. No cosmid DNA hybridizing with heterologous probes for C delta could be found within 20 kb 3' of C mu and C delta could not be cloned from genomic or cDNA libraries. A conserved IgD fragment could be amplified from human, mouse and rat genomic DNA but not from rabbit, swine or cattle. We hypothesize that heavy chain organization and constituency in homeothermic vertebrates is correlated with the site of secondary antibody repertoire development and the mechanism(s) used.
Intraluminal Blockade of Cell-Surface CD74 and Glucose Regulated Protein 78 Prevents Substance P-Induced Bladder Inflammatory Changes in the Rat (2009)

GRP78 is expressed on the surface of urothelial cells after substance P treatment where it can bind MIF complexes. Blocking CD74 (receptor for MIF) and/or GRP78 prevented substance P-induced inflammatory changes in bladder and urothelium, indicating that these urothelial receptors are effective targets for disrupting MIF-mediated bladder inflammation.
3D Printing of Electro Mechanical Systems (2013)

Recent research has focused on the fabrication freedom of 3D printing to not only create conceptual models but final end-use products as well. By democratizing the manufacturing process, products will inevitably be fabricated locally and with unit-level customization. For 3D printed end-use products to be profoundly meaningful, the fabrication technologies will be required to enhance the structures with additional features such as electromechanical content. In the last decade, several research groups have reported embedding electronic components and electrical interconnect into 3D printed structures during process interruptions. However, to date there appears to be an absence of fabricated devices with electromechanical functionality in which moving parts with electronic control have been created within a single Additive Manufacturing (AM) build sequence. Moreover, previously reported 3D printed electronics were limited by the use of conductive inks, which serve as electrical interconnect and are commonly known for inadequate conductivity. This paper describes the fabrication of a high current (&gt;1 amp) electromechanical device through a single hybrid AM build sequence using a uPrint Plus, a relatively low cost 3D. Additionally, a novel integrated process for embedding high performance conductors directly into the thermoplastic FDM substrate is demonstrated. By avoiding low conductivity inks, high power electromechanical applications are enabled such as 3D printed robotics, UAVs and biomedical devices.
Heterotrimeric G-protein α-Subunit Adopts a “Preactivated” Conformation When Associated with βγ-Subunits (2005)

Activation of a heterotrimeric G-protein by an agonist-stimulated G-protein-coupled receptor requires the propagation of structural signals from the receptor binding interface to the guanine nucleotide binding pocket of the G-protein. To probe the molecular basis of this signaling process, we are applying high resolution NMR to track structural changes in an isotope-labeled, full-length G-protein alpha-subunit (G(alpha)) chimera (ChiT) associated with G-protein betagamma-subunit (G(betagamma)) and activated receptor (R(*)) interactions. Here, we show that ChiT can be functionally reconstituted with G(betagamma) as assessed by aluminum fluoride-dependent changes in intrinsic tryptophan fluorescence and light-activated rhodopsin-catalyzed guanine nucleotide exchange. We further show that (15)N-ChiT can be titrated with G(betagamma) to form stable heterotrimers at NMR concentrations. To assess structural changes in ChiT upon heterotrimer formation, HSQC spectra of the (15)N-ChiT-reconstituted heterotrimer have been acquired and compared with spectra obtained for GDP/Mg(2+)-bound (15)N-ChiT in the presence and absence of aluminum fluoride and guanosine 5'-3-O-(thio)triphosphate (GTPgammaS)/Mg(2+)-bound (15)N-ChiT. As anticipated, G(betagamma) association with (15)N-ChiT results in (1)HN, (15)N chemical shift changes relative to the GDP/Mg(2+)-bound state. Strikingly, however, most (1)HN, (15)N chemical shift changes associated with heterotrimer formation are the same as those observed upon formation of the GDP.AlF(4)(-)/Mg(2+)- and GTPgammaS/Mg(2+)-bound states. Based on these comparative analyses, assembly of the heterotrimer appears to induce structural changes in the switch II and carboxyl-terminal regions of G(alpha) ("preactivation") that may facilitate the interaction with R(*) and subsequent GDP/GTP exchange.
Effect of structure on properties of aromatic‐aliphatic polybenzimidazoles. II (1979)

Abstract Polybenzimidazoles (PBI) with p ‐phenylene and/or cis ‐vinylene groups in the backbone were prepared from terephthalic acid (T), maleic acid (M), and 3,3′ diamino‐benzidine tetrahydrochloride dihydrate (DAB) in poly(phosphoric acid) (PPA). Five polymer samples were prepared by varying the M:T molar ratios in the following order: 1:0, 1:1, 2:1, 1:2, and 1:4. The polymers were characterized by intrinsic viscosity, density, electronic fluorescence, and IR spectra. The effect of composition on the solubility of the polymers in various organic solvents was also investigated. The relative thermal stability of the polymers was evaluated by dynamic thermogravimetry in air and polybenzimidazoles (PBI) with cis ‐vinylene groups were found to be less stable.
The use of titanium mesh sheet in the frontozygma tico‐orbital region. Case reports (1998)

Six cases reconstructed in the zygomatico-fronto-orbital region with titanium mesh are reported and a discussion of the use of this material in oral and maxillofacial surgery is presented.
Theory of the Josephson effect ind-wave superconductors (1996)

A general formula for the Josephson current in a $d$-wave/insulator/$d$-wave-superconductor junction is presented by taking account of the zero-energy states formed around the interfaces. For a fixed phase difference between the two superconductors, the current component becomes either positive or negative depending on the injection angle of the quasiparticle. Anomalous temperature dependences are predicted in the maximum Josephson current and in the free-energy minima.
Comodulation of CD3 and CD4. Evidence for a specific association between CD4 and approximately 5% of the CD3:T cell receptor complexes on helper T lymphocytes. (1988)

The aggregation of a specific class of lymphocyte surface molecules results in patching, capping, and surface modulation of the aggregated ligand. Both CD4, an associative recognition structure found on helper T lymphocytes, and CD3, a component of the T cell receptor complex, are members of this functional subgroup. When 125I-labeled monoclonal antibodies reactive with either CD4 (19Thy 5D7) or CD3 (RW24B6) were bound to T lymphocytes, the subsequent addition of goat anti-mouse Ig resulted in their rapid, temperature-dependent internalization. Whereas the binding of 125I-19Thy 5D7 (anti-CD4) was inhibited by greater than 90% in the presence of unlabeled 19Thy 5D7, no inhibition occurred in the presence of unlabeled antibody reactive with CD3 (RW28C8). We took advantage of the fact that these antibodies were of different isotypes (19Thy 5D7:IgG2a; RW28C8:IgGl) to determine whether the internalization of CD3 induced the comodulation of CD4. T lymphocytes preincubated with 125I-19Thy5D7 (anti-CD4) and unlabeled RA28C8 (anti-CD3) were treated with goat anti-mouse IgGl under conditions shown to quantitatively internalize CD3. After 1 h at 37 degrees C, T lymphocytes had internalized 10.5 +/- 2.6% (n = 3) of their antibody-bound cell surface CD4. After similar incubations with media alone or with goat anti-mouse IgGl in the absence of prebound RW28C8 (anti-CD3), no internalization of CD4 could be detected. Control antibodies reactive with CD45R (2H4, IgGl) also failed to induce the internalization of CD4. Similar results were obtained by using a helper T cell clone (T4C1) that internalized 9.6 +/- 2.8% (n = 3) of its antibody-bound cell surface CD4 in response to CD3 modulation. In a reciprocal experiment, 125I-anti-CD3 (RW24B6, IgG2b) was preincubated with T4Cl cells together with unlabeled anti-CD4 (12T4D11, IgG1) prior to the addition of goat anti-mouse IgGl. The quantitative modulation of CD4 induced the co-internalization of 4.6 +/- 0.6% (n = 3) of cell surface CD3. These results suggest that approximately 5% of the CD3:T cell receptor complexes on helper T lymphocytes are specifically associated with CD4. Furthermore, our results suggest that an average of two CD4 molecules associate with each CD3:T cell receptor complex.