gebhart/patrepeval huggingface dataset:
Restoration of Gene Function by Homologous Recombination: from PCR to Gene Expression in One Step (2004)

ABSTRACT We have developed a simple method for single-step cloning of any PCR product into a plasmid. A novel selection principle has been applied, in which activation of a drug selection marker is achieved following homologous recombination. In this method a DNA fragment is amplified by PCR with standard oligonucleotides that contain flanking tails derived from the host plasmid and the complete λP R or rrnA1 promoter regions. The resulting PCR product is then electroporated into an Escherichia coli strain harboring both the phage λ Red functions and the host plasmid. Upon homologous recombination of the PCR fragment into the plasmid, expression of a drug selection marker is fully induced due to restoration of its truncated promoter, thus allowing appropriate selection. Recombinant plasmid vectors encoding β-galactosidase and neomycin phosphotransferase were constructed by using this method in two well-known Red systems. This cloning strategy significantly reduces both the time and costs associated with cloning procedures.
Detection of Metastatic Vulvar and Cervical Squamous Carcinoma in Regional Lymph Nodes by Use of a Polyclonal Keratin Antibody (1990)

A polyclonal keratin antibody (pK), a marker for epithelial cells, was used to evaluate lymph nodes (LNs) from patients with invasive squamous carcinomas of the cervix (CxCa) or vulva (VCa) to determine whether this technique could increase the detection of metastases (mets) over that obtained by light microscopy using a routine hematoxylin and eosin (H&E)-stained slide. The LN status of 15 cases of stage 1B CxCa and 14 cases of VCa was determined using a routine H&E slide. Subsequently, all LNs were resectioned and examined using a pK immunoperoxidase stain. In 329 lymph nodes from 14 cases of CxCa and 9 cases of VCa originally classified as LN-negative, only a single met was detected by the pK technique. In five cases of VCa and one case of CxCa (121 LNs), with LN mets or LN tumor emboli on the original H&E, three additional microscopic foci of mets were detected by pK. Of the four foci of mets discovered by pK, one was visible in retrospect on the original H&E section, and all four were easily identified on examination of a serial H&E section adjacent to the pK section. These results suggest that pK stains are unlikely to significantly increase our sensitivity in detecting mets in CxCa and VCa, beyond merely further sectioning and H&E staining of nodes.
Formulation of Poloxamers for Drug Delivery (2018)

Poloxamers, also known as Pluronics<sup>®</sup>, are block copolymers of poly(ethylene oxide) (PEO) and poly(propylene oxide) (PPO), which have an amphiphilic character and useful association and adsorption properties emanating from this. Poloxamers find use in many applications that require solubilization or stabilization of compounds and also have notable physiological properties, including low toxicity. Accordingly, poloxamers serve well as excipients for pharmaceuticals. Current challenges facing nanomedicine revolve around the transport of typically water-insoluble drugs throughout the body, followed by targeted delivery. Judicious design of drug delivery systems leads to improved bioavailability, patient compliance and therapeutic outcomes. The rich phase behavior (micelles, hydrogels, lyotropic liquid crystals, etc.) of poloxamers makes them amenable to multiple types of processing and various product forms. In this review, we first present the general solution behavior of poloxamers, focusing on their self-assembly properties. This is followed by a discussion of how the self-assembly properties of poloxamers can be leveraged to encapsulate drugs using an array of processing techniques including direct solubilization, solvent displacement methods, emulsification and preparation of kinetically-frozen nanoparticles. Finally, we conclude with a summary and perspective.
Disulfide bonds. Determination, location, and influence on molecular properties of proteins (1971)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTDisulfide bonds. Determination, location, and influence on molecular properties of proteinsJ. S. WallCite this: J. Agric. Food Chem. 1971, 19, 4, 619–625Publication Date (Print):July 1, 1971Publication History Published online1 May 2002Published inissue 1 July 1971https://pubs.acs.org/doi/10.1021/jf60176a003https://doi.org/10.1021/jf60176a003research-articleACS PublicationsRequest reuse permissionsArticle Views918Altmetric-Citations55LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Utilizing Binary Rewriting for Improving End-Host Security (2007)

Conventional methods supporting Java binary security mainly rely on the security of the host Java Virtual Machine (JVM). However, malicious Java binaries keep exploiting the vulnerabilities of JVMs, escaping their sandbox restrictions and allowing attacks on end-user systems. Administrators must confront the difficulties and dilemmas brought on by security upgrades. On the other hand, binary rewriting techniques have been advanced to allow users to enforce security policies directly on the mobile code. They have the advantages of supporting a richer set of security policies and a self-constrained written code. However, the high administrative and performance overhead caused by security configuration and code rewriting have prevented rewriters from becoming a practical security tool. In this paper, we address these problems by integrating binary code rewriters with Web caching proxies and build the security system called PB-JARS, a Proxy-based JAva Rewriting System. PB-JARS works as a complimentary system to existing JVM security mechanisms by placing another line of defense between users and their end-user systems. It gives system administrators centralized security control and management for the mobile code and security policies. We evaluated PB-JARS using a real Java binary traffic model derived from analyzing real Web trace records. Our results show that adding binary rewriting to a Web caching system can be very efficient in improving end-host security at a low cost.
Targeting of TLRs Inhibits CD4+ Regulatory T Cell Function and Activates Lymphocytes in Human Peripheral Blood Mononuclear Cells (2014)

Accumulating evidence suggests elements within tumors induce exhaustion of effector T cells and infiltration of immunosuppressive regulatory T cells (Tregs), thus preventing the development of durable antitumor immunity. Therefore, the discovery of agents that simultaneously block Treg suppressive function and reinvigorate effector function of lymphocytes is key to the development of effective cancer immunotherapy. Previous studies have shown that TLR ligands (TLRLs) could modulate the function of these T cell targets; however, those studies relied on cell-free or accessory cell-based assay systems that do not accurately reflect in vivo responses. In contrast, we used a human PBMC-based proliferation assay system to simultaneously monitor the effect of TLRLs on T cells (CD4(+), CD8(+), Tregs), B cells, and NK cells, which gave different and even conflicting results. We found that the TLR7/8L:CL097 could simultaneously activate CD8(+) T cells, B cells, and NK cells plus block Treg suppression of T cells and B cells. The TLRLs TLR1/2L:Pam3CSK4, TLR5L:flagellin, TLR4L:LPS, and TLR8/7L:CL075 also blocked Treg suppression of CD4(+) or CD8(+) T cell proliferation, but not B cell proliferation. Besides CL097, TLR2L:PGN, CL075, and TLR9L:CpG-A, CpG-B, and CpG-C) were strong activators of NK cells. Importantly, we found that Pam3CSK4 could: 1) activate CD4(+) T cell proliferation, 2) inhibit the expansion of IL-10(+) naturally occurring FOXP3(+) Tregs and induction of IL-10(+) CD4(+) Tregs (IL-10-producing type 1 Treg), and 3) block naturally occurring FOXP3(+) Tregs suppressive function. Our results suggest these agents could serve as adjuvants to enhance the efficacy of current immunotherapeutic strategies in cancer patients.
Cardiac Fibroblasts Contribute to Myocardial Dysfunction in Mice with Sepsis: The Role of NLRP3 Inflammasome Activation (2014)

Myocardial contractile dysfunction in sepsis is associated with the increased morbidity and mortality. Although the underlying mechanisms of the cardiac depression have not been fully elucidated, an exaggerated inflammatory response is believed to be responsible. Nucleotide-binding oligomerization domain-like receptor containing pyrin domain 3 (NLRP3) inflammasome is an intracellular platform that is involved in the maturation and release of interleukin (IL)-1β. The aim of the present study is to evaluate whether sepsis activates NLRP3 inflammasome/caspase-1/IL-1β pathway in cardiac fibroblasts (CFs) and whether this cytokine can subsequently impact the function of cardiomyocytes (cardiac fibroblast-myocyte cross-talk). We show that treatment of CFs with lipopolysaccharide (LPS) induces upregulation of NLRP3, activation of caspase-1, as well as the maturation (activation) and release of IL-1β. In addition, the genetic (small interfering ribonucleic acid [siRNA]) and pharmacological (glyburide) inhibition of the NLRP3 inflammasome in CFs can block this signaling pathway. Furthermore, the inhibition of the NLRP3 inflammasome in cardiac fibroblasts ameliorated the ability of LPS-challenged CFs to impact cardiomyocyte function as assessed by intracellular cyclic adenosine monophosphate (cAMP) responses in cardiomyocytes. Salient features of this the NLP3 inflammasome/ caspase-1 pathway were confirmed in in vivo models of endotoxemia/sepsis. We found that inhibition of the NLRP3 inflammasome attenuated myocardial dysfunction in mice with LPS and increased the survival rate in mice with feces-induced peritonitis. Our results indicate that the activation of the NLRP3 inflammasome in cardiac fibroblasts is pivotal in the induction of myocardial dysfunction in sepsis.
Effect of carrier loss through waveguide layer recombination on the internal quantum efficiency in large-optical-cavity laser diodes (2005)

An analytical treatment for carrier distribution in optical confinement layers (OCLs) of semiconductor lasers with bimolecular recombination is developed. On the basis of this approach, the effect of OCL recombination on the internal quantum efficiency of a laser is evaluated. It is shown that this effect can lead to a rapid deterioration in efficiency with increased waveguide thickness at high enough currents, and also contributes to the efficiency decrease with current in a given structure. An asymmetric, narrow waveguide structure is shown to avoid this problem while still providing a good-quality beam.
Bio-Emulsifiers (1976)

This review discusses the current state of the art on the subject of emulsifiers, particularly those of biological origins. The basic principles involved in the mode of action of emulsifier molecules are reviewed. Current ideas on the classification, physicochemical properties, stability, and rheological properties of emulsions are discussed. The literature review on bio-emulsifiers emphasizes those of microbial origins and their application in industry. Some of the more common methods for the study of emulsion properties are also outlined.
Broad recognition of cytotoxic T cell epitopes from the HIV-1 envelope protein with multiple class I histocompatibility molecules (1992)

A few cases have been described of antigenic determinants that are broadly presented by multiple class II MHC molecules, especially murine I-E or human DR, in which polymorphism is limited to the beta chain, and the alpha chain is conserved. However, no similar cases have been studied for presentation by class I MHC molecules. Because both domains of the MHC peptide binding site are polymorphic in class I molecules, exploring permissiveness in class I presentation would be of interest, and also such broadly presented antigenic determinants would clearly be useful for vaccine development. We had defined an immunodominant determinant, P18, of the HIV-1 gp160 envelope protein recognized by human and murine CTL. To determine the range of class I MHC molecules that could present this peptide and to determine whether two HIV-1 gp160 Th cell determinants, T1 and HP53, could also be presented by class I MHC molecules, we attempted to generate CTL specific for these three peptides in 10 strains of B10 congenic mice, representing 10 MHC types, and BALB/c mice. P18 was presented by at least four different class I MHC molecules from independent haplotypes (H-2d, p, u, and q to CD8+ CTL. In H-2d and H-2q the presentation was mapped to the D-end class I molecule, and for Dd, a requirement for both the alpha 1 and alpha 2 domains of Dd, not Ld, was found. HP53 was also presented by the same four different class I MHC molecules to CD8+ CTL although at higher concentrations. T1 was presented by class I molecules in three different strains of distinct MHC types (B10.M, H-2f; B10.A, H-2a; and B10, H-2b) to CTL. The CTL specific for P18 and HP53 were shown to be CD8+ and CD4- and to kill targets expressing endogenously synthesized whole gp160 as well as targets pulsed with the corresponding peptide. To compare the site within each peptide presented by the different class I molecules, we used overlapping and substituted peptides and found that the critical regions of each peptide are the similar for all four MHC molecules. Thus, antigenic sites are broadly or permissively presented by class I MHC molecules even without a nonpolymorphic domain as found in DR and I-E, and these sequences may be of broad usefulness in a synthetic vaccine.
Posttranslational protein modifications, apoptosis, and the bypass of tolerance to autoantigens (1998)

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INHIBITION OF TRANSPLANT REJECTION BY PRETREATMENT OF XENOGENEIC PANCREATIC ISLET CELLS WITH ANTI-ICAM-1 ANTIBODIES (1994)

Transplantation is published monthly and is the most cited and influential journal in the field, with more than 25,000 citations per year. The journal celebrated its 50th year in 2016. Transplantation has been the trusted source for extensive and timely coverage of the most important advances in transplantation. The Editors and Editorial Board are an international group of research and clinical leaders that includes many pioneers of the field, representing a diverse range of areas of expertise. This capable editorial team provides thoughtful and thorough peer review, and delivers rapid, careful and insightful editorial evaluation of all manuscripts submitted to the journal.
Quaternary quantum wells for electro-optic intensity and phase modulation at 1.3 and 1.55 μm (1989)

We demonstrate for the first time that large quantum-confined Stark effect can be obtained in high quality InGaAsP/InP quantum well p-i-n heterostructures. The compositional flexibility of this material system is particularly suited for quantum well device applications in optical communications systems operating between 1.55 and 1.3 μm. We measure the magnitude of the shift of the ground-state exciton transition with applied electric field and find that it is significantly enhanced over ternary wells. We have also determined the electro-optic intensity and phase modulation response in these structures.
Management of hyperglycemia in patients with diabetes mellitus and chronic renal failure. (2008)

Diabetes mellitus is recognized as a leading cause of chronic kidney disease and end-stage renal failure. Chronic renal failure is associated with insulin resistance and, in advanced renal failure, decreased insulin degradation. Both of these abnormalities are partially reversed with the institution of dialysis. Except for diet with protein restriction, patients with diabetes should be preferably treated with insulin. The management of the patients with hyperglycemia and chronic renal failure calls for close collaboration between the diabetologist and the nephrologists. This collaboration is very important so that the patient will not be confused and will not lose confidence to the doctors. Furthermore good glycemic control in these patients seems to reduce microvascular and macrovascular complications.
Optically Active Metallo-Supramolecular Polymers Derived from ChiralBis-terpyridines (2009)

The optically active metallo-supramolecular polymers were successfully synthesized via complexation of Fe(II) ions with new bis-terpyridines containing chiral tetra-ethylene glycol units at the ortho-position of the peripheral pyridine rings. In addition, we also revealed solvent and temperature effects toward assembly and dis-assembly behavior of polymers.
Effect ofSaccharomyces cerevisiaeyeast culture supplement on ruminal metabolism in buffalo calves given a high concentrate diet (1994)

Abstract The effect of inclusion of live yeast culture (YC, Saccharomyces cerevisiae plus growth medium) in a high concentrate diet given to buffalo (Bubalus bubalis) calves on the rumen microbial population and fermentation pattern and in sacco dry matter disappearance of dietary constituents was examined. Six rumen-fistulated buffalo calves of about 120 kg live iveight were divided into two equal groups. The control group was given a diet consisting of, on a dry-matter basis, 0·90 kg ivheat straw, 1 kg berseem (Trifolium alexandrinum) and ISO kg concentrate per day per calf and the yeast group the above diet plus 5 g YC which was put directly into the rumen via the fistula. After feeding this diet for 6 weeks (supplementation period), inclusion of YC was stopped and both groups were given the control diet for a period of 3 weeks to examine the performance of the YC group after withdrawal of YC. At week 4 of YC supplementation the pH was significantly increased ( P &lt; 0·01) and lactate concentration was decreased ( P &lt; 0·01) in the rumen fluid for up to 6 h post feeding. The number of total bacteria, total viable bacteria, cellulolytic bacteria, amylolytic bacteria and protozoa were increased proportionately by 0·554 ( P &lt; 002), 0·482 (P&lt;0·01), 0·670 ( P &lt;0·01), 0·077 (P &gt; 0·05) and 0·079 (P&gt;0·05), respectively. The concentrations of total volatile fatty acids, particularly at 4 h post feeding ( P &lt; 0·01), acetate f P &lt; 0·01) and propionate and the acetate to propionate ratio were higher in the YC compared with the control group. On YC inclusion, the concentration of ammonia-nitrogen was decreased while that of trichloracetic acid insoluble protein was marginally increased. All these differences in rumen variables started to disappear on YC withdrawal and values returned to control levels by the 3rd week after YC withdrawal. YC supplementation increased the in sacco dry-matter disappearance of various dietary components particularly after 3, 6 and 22 h incubation.
Integration of Back-Gate doping for 15-nm node floating body cell (FBC) memory (2010)

Key process features of a scaled, high-performance planar FBC memory fabricated on 25-nm undoped Si and 10-nm BOX SOI substrates are presented. Back-Gate (BG) doping process is revealed to be a critical part of the FBC integration. BG dopant loss due to oxidation and high-temperature processes is minimized to enable high performance at scaled diffusion widths (W<;100 nm). Integrating BG doping processes and designing tips and source/drain, we demonstrate a memory retention of over 1 sec (@ 3-μA sensing window) in scaled cells (L <sub xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">g</sub> =50 nm, W=85 nm) suitable for 15-nm technology node.
A Magnetically Triggered Composite Membrane for On-Demand Drug Delivery (2009)

Nanocomposite membranes based on thermosensitive, poly(N-isopropylacrylamide)-based nanogels and magnetite nanoparticles have been designed to achieve "on-demand" drug delivery upon the application of an oscillating magnetic field. On-off release of sodium fluorescein over multiple magnetic cycles has been successfully demonstrated using prototype membrane-based devices. The total drug dose delivered was directly proportional to the duration of the "on" pulse. The membranes were noncytotoxic, were biocompatible, and retained their switchable flux properties after 45 days of subcutaneous implantation.
Shedding of the CD44 adhesion molecule from leukocytes induced by anti-CD44 monoclonal antibody simulating the effect of a natural receptor ligand (1992)

The CD44 adhesion molecule, playing an important role in leukocyte extravasation, was down-regulated by PMA and ionomycin on granulocytes and by an immobilized or soluble anti-CD44 mAb both on granulocytes and lymphocytes. Soluble labeled CD44 molecules of lower apparent molecular mass as compared to their membrane counterparts were isolated from culture supernatants of stimulated surface iodinated cells. Shedding rather than internalization is the mechanism found to be responsible for the loss of CD44 from the cell surface. The size of the soluble CD44 shed from the cells stimulated in vitro corresponds to soluble CD44 isolated from human serum. These data suggest that shedding, induced by anti-CD44 antibody simulating the effect of a natural CD44 ligand, is an important regulatory mechanism controlling surface CD44 expression on leukocytes in vivo.