gebhart/patrepeval huggingface dataset:
The use of CrossMAb technology for the generation of bi- and multispecific antibodies (2016)

The major challenge in the generation of bispecific IgG antibodies is enforcement of the correct heavy and light chain association. The correct association of generic light chains can be enabled using immunoglobulin domain crossover, known as CrossMAb technology, which can be combined with approaches enabling correct heavy chain association such as knobs-into-holes (KiH) technology or electrostatic steering. Since its development, this technology has proven to be very versatile, allowing the generation of various bispecific antibody formats, not only heterodimeric/asymmetric bivalent 1+1 CrossMAbs, but also tri- (2+1), tetravalent (2+2) bispecific and multispecific antibodies. Numerous CrossMAbs have been evaluated in preclinical studies, and, so far, 4 different tailor-made bispecific antibodies based on the CrossMAb technology have entered clinical studies. Here, we review the properties and activities of bispecific CrossMAbs and give an overview of the variety of CrossMAb-enabled antibody formats that differ from heterodimeric 1+1 bispecific IgG antibodies.
Optochemical Genetics (2011)

Transmembrane receptors allow a cell to communicate with its environment in response to a variety of input signals. These can be changes in the concentration of ligands (e.g. hormones or neurotransmitters), temperature, pressure (e.g. acoustic waves or touch), transmembrane potential, or light intensity. Many important receptors have now been characterized in atomic detail and our understanding of their functional properties has markedly increased in recent years. As a consequence, these sophisticated molecular machines can be reprogrammed to respond to unnatural input signals. In this Review, we show how voltage-gated and ligand-gated ion channels can be endowed with synthetic photoswitches, and how the resulting artificial photoreceptors can be used to optically control neurons with exceptional temporal and spatial precision. They work well in animals and might find applications in the restoration of vision and the optical control of other sensations. The combination of synthetic photoswitches and receptor proteins contributes to the field of optogenetics and adds a new functional dimension to chemical genetics. As such, we propose to call it "optochemical genetics".
Development of 50 mm diameter non-polar gallium nitride substrates for device applications (2003)

We report the development of large 50 mm diameter free standing wafers of GaN. GaN layers up to 350 /spl mu/m thick have been grown by HVPE on lattice-matched LiAlO/sub 2/ substrates. The original oxide substrates were removed by wet chemical etching, and the defect structure of the GaN wafers has been investigated. The issue of stacking faults vs. polar inversion domains has been resolved in favor of ABABACAC stacking sequences. A UV-emitting LED (368 nm) has been developed on these substrates, using molecular beam epitaxy.
Determination of Optical Properties from Transmission Measurements (1971)

Get PDF Email Share Share with Facebook Tweet This Post on reddit Share with LinkedIn Add to CiteULike Add to Mendeley Add to BibSonomy Get Citation Copy Citation Text R. C. Progelhof and J. L. Throne, "Determination of Optical Properties from Transmission Measurements," Appl. Opt. 10, 2548-2549 (1971) Export Citation BibTex Endnote (RIS) HTML Plain Text Citation alert Save article
Spectral binning for mitigation of polarization mode dispersion artifacts in catheter-based optical frequency domain imaging (2013)

Polarization mode dispersion (PMD) has been recognized as a significant barrier to sensitive and reproducible birefringence measurements with fiber-based, polarization-sensitive optical coherence tomography systems. Here, we present a signal processing strategy that reconstructs the local retardation robustly in the presence of system PMD. The algorithm uses a spectral binning approach to limit the detrimental impact of system PMD and benefits from the final averaging of the PMD-corrected retardation vectors of the spectral bins. The algorithm was validated with numerical simulations and experimental measurements of a rubber phantom. When applied to the imaging of human cadaveric coronary arteries, the algorithm was found to yield a substantial improvement in the reconstructed birefringence maps.
Morphologic Observations Late after Coronary Balloon Angioplasty: Mechanisms of Acute Injury and Relationship to Restenosis (1990)

Despite widespread use of coronary balloon angioplasty, advances in angioplasty technology, and improvements in operator technique, restenosis at the angioplasty site is the major problem limiting the long-term efficacy of this procedure. The article reviews morphologic-histologic observations at angioplasty restenosis sites, speculates about the connection between the acute injury patterns of balloon angioplasty and the development of restenosis, and briefly reviews the currently understood pathways to restenosis and possible approaches to its reduction or elimination.
Spontaneous Formation of Highly Functional Three-Dimensional Multilayer from Human Hepatoma Hep G2 Cells Cultured on an Oxygen-Permeable Polydimethylsiloxane Membrane (2009)

When considering high-density liver cell cultures, adequate delivery of oxygen to the cells appears particularly crucial since it is one of the most limiting parameters of hepatocytes' functions. Here we report on the effects of direct oxygenation through a gas-permeable polydimethylsiloxane membrane on liver-derived cell culture. We used highly proliferative human hepatoma Hep G2 cells to assess the growth-related limitation of such direct oxygen supply. As a consequence of the greater oxygen availability, the proliferation of Hep G2 cells was markedly enhanced, leading to the formation of a thick three-dimensional cellular multilayer. This was supported by the oxygen concentration profiles in the vicinity of the cell layers, predicted by numerical simulations. The applied cells also displayed an increased functionality as assessed by the high-albumin production rates, with per well-based albumin secretion reaching after 15 days 50 times that of the cells cultured in conventional polystyrene plates. Anaerobic glycolysis was in the same time significantly reduced as assessed by both the reduced glucose consumption and lactate production rates. Direct oxygenation through such a gas-permeable membrane appears suitable for engineering functional thick liver tissues for in vivo implantation, as well as for microplate-based chemical/drug screening applications.
Polyiodinated Triglyceride Analogs as Potential Computed Tomography Imaging Agents for the Liver (1995)

A series of glyceryl 2-oleoyl 1,3-bis[omega-(3-amino-2,4,6-triiodophenyl)] alkanoates was synthesized, radioiodinated with iodine-125, emulsified, and evaluated for their ability to selectively localize in the liver for potential use as hepatographic agents in computed tomography. All seven analogs displayed rapid liver uptake wherein between 65 and 78% of the injected dose accumulated in the liver by 30 min. Liver values ranged from 46 to 93% 3 h after injection which corresponded to liver to blood ratios ranging from 21 to 450. Moreover, subsequent elimination of radioactivity from the liver was nearly linear with respect to alkyl chain length. Analogs with longer alkyl chain length were eliminated from the liver more rapidly than their shorter chain counterparts. Because of their biochemical similarities to naturally occurring triglycerides, these novel analogs may prove useful not only for high-resolution anatomic imaging of focal liver lesions, but also for evaluating a variety of diffuse diseases known to affect hepatic function and biochemistry.
Arginine Stimulates Growth Hormone Secretion by Suppressing Endogenous Somatostatin Secretion* (1988)

To determine how arginine (Arg) stimulates GH secretion, we investigated its interaction with GHRH in vivo and in vitro. Six normal men were studied on four occasions: 1) Arg-TRH, 30 g arginine were administered in 500 mL saline in 30 min, followed by an injection of 200 micrograms TRH; 2) GHRH-Arg-TRH, 100 micrograms GHRH-(1-44) were given iv as a bolus immediately before the Arg infusion, followed by 200 micrograms TRH, iv; 3) GHRH test, 100 micrograms GHRH were given as an iv bolus; and 4) TRH test, 200 micrograms TRH were given iv as a bolus dose. Blood samples were collected at 15-min intervals for 30 min before and 120 min after the start of each infusion. Anterior pituitary cells from rats were coincubated with Arg (3, 6, 15, 30, and 60 mg/mL) and GHRH (0.05, 1, 5, and 10 nmol/L) for a period of 3 h. Rat GH was measured in the medium. After Arg-TRH the mean serum GH concentration increased significantly from 0.6 to 23.3 +/- 7.3 (+/- SE) micrograms/L at 60 min. TRH increased serum TSH and PRL significantly (maximum TSH, 11.1 +/- 1.8 mU/L; maximum PRL, 74.6 +/- 8.4 micrograms/L). After GHRH-Arg-TRH, the maximal serum GH level was significantly higher (72.7 +/- 13.4 micrograms/L) than that after Arg-TRH alone, whereas serum TSH and PRL increased to comparable levels (TSH, 10.2 +/- 3.0 mU/L; PRL, 64.4 +/- 13.6 micrograms/L). GHRH alone increased serum GH to 44.9 +/- 9.8 micrograms/L, significantly less than when GHRH, Arg, and TRH were given. TRH alone increased serum TSH to 6.6 +/- 0.6 mU/L, significantly less than the TSH response to Arg-TRH. The PRL increase after TRH only also was lower (47.2 +/- 6.8 micrograms/L) than the PRL response after Arg-TRH. In vitro Arg had no effect on basal and GHRH-stimulated GH secretion. Our results indicate that Arg administered with GHRH led to higher serum GH levels than did a maximally stimulatory dose of GHRH or Arg alone. The serum TSH response to Arg-TRH also was greater than that to TRH alone. We conclude that the stimulatory effects of Arg are mediated by suppression of endogenous somatostatin secretion.
Phospholipids undergo hop diffusion in compartmentalized cell membrane (2002)

The diffusion rate of lipids in the cell membrane is reduced by a factor of 5-100 from that in artificial bilayers. This slowing mechanism has puzzled cell biologists for the last 25 yr. Here we address this issue by studying the movement of unsaturated phospholipids in rat kidney fibroblasts at the single molecule level at the temporal resolution of 25 micros. The cell membrane was found to be compartmentalized: phospholipids are confined within 230-nm-diameter (phi) compartments for 11 ms on average before hopping to adjacent compartments. These 230-nm compartments exist within greater 750-nm-phi compartments where these phospholipids are confined for 0.33 s on average. The diffusion rate within 230-nm compartments is 5.4 microm2/s, which is nearly as fast as that in large unilamellar vesicles, indicating that the diffusion in the cell membrane is reduced not because diffusion per se is slow, but because the cell membrane is compartmentalized with regard to lateral diffusion of phospholipids. Such compartmentalization depends on the actin-based membrane skeleton, but not on the extracellular matrix, extracellular domains of membrane proteins, or cholesterol-enriched rafts. We propose that various transmembrane proteins anchored to the actin-based membrane skeleton meshwork act as rows of pickets that temporarily confine phospholipids.
DUCTILITY AND FLOW RULE OF TANTALUM AT 20°C AND 500°C (1985)

The ductility and flow rule of tantalum were investigated at 20°C and 500°C over the strain rate range 10-4 - 2x103 s-1. It was shown that ductility is essentially determined by the elongation stability, which in turn is controlled by the strain hardening and strain rate sensitivity parameters. At room temperature, the elongation to fracture decreases over the range of strain rates investigated, whereas at 500°C it is larger at high strain rates than in the quasistatic range. This latter behavior is similar to that of copper at 20°C, although the crystallographic structures are different.
A low-loss 16-channel polarization dispersion-compensated PHASAR demultiplexer (1998)

An improved technology for realizing high-quality PHASARs is reported, which is compatible with the integration of electrooptical switches for use in add-drop multiplexers. This technology is demonstrated in a 16-channel polarization independent low loss (<2.4 dB on-chip) PHASAR.
Characterization of Phage-Displayed Recombinant Anti-Idiotypic Antibody Fragments Against Coronavirus-Neutralizing Monoclonal Antibodies (1997)

Murine coronaviruses provide useful animal models for human neurological disorders such as multiple sclerosis. In an effort to better understand the mechanisms involved in protection from coronavirus infection, we are studying the role of the idiotypic network in the modulation of viral infectivity. We have explored the feasibility of using single-chain antibodies displayed on phage surfaces for the isolation of recombinant anti-idiotypic antibodies (anti-Ids) with antigen-mimicking properties, which has proven to be difficult with conventional hybridoma approaches. A phage-display library containing more than 10(8) different antibody specificities was screened for the presence of anti-Ids by successive rounds of panning with three different in vitro neutralizing and in vivo protective antiviral monoclonal antibodies. After five rounds of panning, between 32% and 84% of all individual clones tested showed antibody-binding in an enzyme-linked immunosorbent assay (ELISA). Although several clones showed identical antibody sequences, a number of different clones were identified and further characterized. None of the selected clones induced the production of antiviral or neutralizing antibodies or conferred reproducible protection from viral challenge in BALB/c and C57BL/6 mice. These results demonstrate that anti-Ids can be isolated from a phage-display library, although high-affinity antigen-mimicking phages with antiviral protective capacities were apparently not represented in this library. This argues for the development of more diverse phage-display libraries.
Anisotropy of experimentally compressed kaolinite-illite-quartz mixtures (2008)

Abstract The anisotropy of physical properties is a well-known characteristic of many clay-bearing rocks. This anisotropy has important implications for elastic properties of rocks and must be considered in seismic modeling. Preferred orientation of clay minerals is an important factor causing anisotropy in clay-bearing rocks such as shales and mudstones that are the main cap rocks of oil reservoirs. The preferred orientation of clays depends mostly on the amount of clays and the degree of compaction. To study the effect of these parameters, we prepared several samples compressing (at two effective vertical stresses) a mixture of clays (illite and kaolinite) and quartz (silt) with different clay/quartz ratios. The preferred orientation of the phases was quantified with Rietveld analysis on synchrotron hard X-ray images. Pole figures for kaolinite and illite display a preferred orientationof clay platelets perpendicular to the compaction direction, increasing in strength with clay content and compaction pressure. Quartz particles have a random orientation distribution. Aggregate elastic properties can be estimated by averaging the single-crystal properties over the orientation distribution obtained from the diffraction data analysis. Calculated P-wave velocity anisotropy ranges from 0% (pure quartz sample) to 44% (pure clay sample, highly compacted), but calculated velocities are much higher than measured velocities. This is attributed to uncertainties about single-crystal elastic properties and oriented micropores and limited grain contacts that are not accounted for in the model. In this work, we present an effective method to obtain quantitative data, helping to evaluate the role of clay percentage and compaction pressure on the anisotropy of elastic properties of clay-bearing rocks.
Reproducing Natural Spider Silks’ Copolymer Behavior in Synthetic Silk Mimics (2012)

Dragline silk from orb-weaving spiders is a copolymer of two large proteins, major ampullate spidroin 1 (MaSp1) and 2 (MaSp2). The ratio of these proteins is known to have a large variation across different species of orb-weaving spiders. NMR results from gland material of two different species of spiders, N. clavipes and A. aurantia , indicates that MaSp1 proteins are more easily formed into β-sheet nanostructures, while MaSp2 proteins form random coil and helical structures. To test if this behavior of natural silk proteins could be reproduced by recombinantly produced spider silk mimic protein, recombinant MaSp1/MaSp2 mixed fibers as well as chimeric silk fibers from MaSp1 and MaSp2 sequences in a single protein were produced based on the variable ratio and conserved motifs of MaSp1 and MaSp2 in native silk fiber. Mechanical properties, solid-state NMR, and XRD results of tested synthetic fibers indicate the differing roles of MaSp1 and MaSp2 in the fiber and verify the importance of postspin stretching treatment in helping the fiber to form the proper spatial structure.
Data-Driven Color Manifolds (2015)

Color selection is required in many computer graphics applications, but can be tedious, as 1D or 2D user interfaces are employed to navigate in a 3D color space. Until now the problem was considered a question of designing general color spaces with meaningful (e.g., perceptual) parameters. In this work, we show how color selection usability improves by applying 1D or 2D color manifolds that predict the most likely change of color in a specific context. A typical use-case is manipulating the color of a banana; instead of presenting a 2D+1D RGB, CIE Lab, or HSV widget, our approach presents a simple 1D slider that captures the most likely change for this context. Technically, for each context, we learn a lower-dimensional manifold with varying density from labeled Internet examples. We demonstrate the increase in task performance of color selection in a user study.
Treatment for glaucoma: adherence by the elderly. (1993)

Substantial nonadherence was found to be common in this population. More attention to the issue of nonadherence could result in important benefits in the preservation of sight.
Increased exposure to UV‐B radiation during early development leads to enhanced photoprotection and improved long‐term performance in Lactuca sativa (2011)

Plant responses to solar UV radiation are numerous and have often been considered from a perspective of negative outcomes for plant productivity. In this study, we used two experimental approaches consisting of: (1) field-based spectrally modifying filters in addition to (2) controlled indoor exposure to UV-B, to examine the effects of UV radiation on growth and photosynthetic performance of lettuce (Lactuca sativa L.) seedlings. Various aspects of growth were affected in plants grown under a UV-inclusive environment compared to a UV-depleted environment, including reductions in leaf expansion, increases in leaf thickness and the rate of net photosynthesis. After transplantation to a uniform field environment, lettuce plants initially propagated under the UV-inclusive environment exhibited higher harvestable yields than those from a UV-depleted environment. In controlled conditions, photosynthetic rates were higher in plants grown in the presence of UV-B radiation, and relative growth of plants pre-acclimatized to UV-B was also increased, in addition to higher maximum photochemical efficiency of photosystem II (PSII) (F(v) /F(m) ) following subsequent exposure to high photosynthetically active radiation (PAR) and temperature stress. Our findings are discussed within the context of sustainability in agriculture and the paradigm shift in photobiology which such beneficial responses to UV radiation could represent.
Ebola Virus Can Be Effectively Neutralized by Antibody Produced in Natural Human Infection (1999)

The activity of antibodies against filoviruses is poorly understood but has important consequences for vaccine design and passive prophylaxis. To investigate this activity, a panel of recombinant human monoclonal antibodies to Ebola virus antigens was isolated from phage display libraries constructed from RNA from donors who recovered from infection in the 1995 Ebola virus outbreak in Kikwit, Democratic Republic of Congo. Antibodies reactive with nucleoprotein (NP), envelope glycoprotein (GP), and secreted envelope glycoprotein (sGP) were characterized by immunofluorescence and radioimmunoprecipitation assays. Four antibodies reacting strongly with sGP and weakly with GP and two antibodies reacting with NP were not neutralizing. An antibody specific for GP neutralized Ebola virus to 50% at 0.4 microgram/ml as the recombinant Fab fragment and to 50% at 0.3 microgram/ml (90% at 2.6 microgram/ml) as the corresponding whole immunoglobulin G1 molecule. The studies indicate that neutralizing antibodies are produced in infection by Ebola virus although probably at a relatively low frequency. The neutralizing antibody may be useful in vaccine design and as a prophylactic agent against Ebola virus infection.
Susceptibility of methicillin-resistant Staphylococcus aureus to the essential oil of Melaleuca alternifolia (1995)

All 66 isolates of Staphylococcus aureus tested were susceptible to the essential oil of Melaleuca alternifolia, or tea tree oil, in disc diffusion and modified broth microdilution methods. Of the isolates tested, 64 were methicillin-resistant S. aureus (MRSA) and 33 were mupirocin-resistant. The MIC and MBC for 60 Australian isolates were 0.25% and 0.50%, respectively. Comparable results were obtained by co-workers in Britain using similar methods. These in-vitro results suggest tea tree oil may be useful in the treatment of MRSA carriage.
Structure of the human oestrogen-responsive gene pS2 (1987)

The human pS2 gene, whose expression is restricted to breast cancer cells, and whose transcription is induced by oestrogen in the human breast cancer cell line MCF-7, has been cloned from both placental and MCF-7 cell DNA. The exon-intron organization has been established by electron microscopy using genomic DNA-cDNA or -mRNA hybrid duplexes and by sequencing the exons and exon-intron junctions. The overall organization within and around the pS2 gene is the same in placental and MCF-7 cell DNA and the exonic sequences are identical to those previously determined from the cDNA. The 5'-flanking region of the pS2 gene is also identical (with the exception of two base transitions) in the two tissues. Thus no gene rearrangement nor sequence modification has occurred in the pS2 gene of the malignant and polyploid MCF-7 cells. A TATA-box, a CAAT-box and a GC-rich motif are present in the 5'-flanking region of the pS2 gene, but the latter motif is unusually located between the TATA-box and the capsite. No significant homology could be detected between the 5' flanking sequences of the pS2 gene and those of other oestrogen-responsive genes from different species.
Space priority management in a shared memory ATM switch (2002)

We study the hierarchical shared memory ATM switch architecture in which the queues for all the switch output ports share space flexibly in a common buffer. Using a computer simulation of this switch under bursty traffic, we investigate various ways to manage space priorities in the shared memory. Our findings support one particular strategy which we call "Selective Pushout". In this scheme, an arriving cell that finds the shared memory full overwrites a cell with priority less than or equal to itself from the longest output queue in the buffer (even if the arriving cell will be joining a different output queue). We simulated Selective Pushout and several simpler pushout and threshold schemes under a variety of load conditions. For each load pattern we studied, the Selective Pushout scheme performed at least as well and usually much better than its competitors. Selective Pushout offered a low overall cell loss rate, with very low losses for the high priority cells.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>