gebhart/patrepeval huggingface dataset:
Effect of Smoking Abstinence and Reduction in Asthmatic Smokers Switching to Electronic Cigarettes: Evidence for Harm Reversal (2014)

Electronic cigarettes (e-cigs) are marketed as safer alternatives to tobacco cigarettes and have shown to reduce their consumption. Here we report for the first time the effects of e-cigs on subjective and objective asthma parameters as well as tolerability in asthmatic smokers who quit or reduced their tobacco consumption by switching to these products. We retrospectively reviewed changes in spirometry data, airway hyper-responsiveness (AHR), asthma exacerbations and subjective asthma control in smoking asthmatics who switched to regular e-cig use. Measurements were taken prior to switching (baseline) and at two consecutive visits (Follow-up/1 at 6 (±1) and Follow-up/2 at 12 (±2) months). Eighteen smoking asthmatics (10 single users, eight dual users) were identified. Overall there were significant improvements in spirometry data, asthma control and AHR. These positive outcomes were noted in single and dual users. Reduction in exacerbation rates was reported, but was not significant. No severe adverse events were noted. This small retrospective study indicates that regular use of e-cigs to substitute smoking is associated with objective and subjective improvements in asthma outcomes. Considering that e-cig use is reportedly less harmful than conventional smoking and can lead to reduced cigarette consumption with subsequent improvements in asthma outcomes, this study shows that e-cigs can be a valid option for asthmatic patients who cannot quit smoking by other methods.
Collagen-Hydroxyapatite Composites for Hard Tissue Repair (2006)

Bone is the most implanted tissue after blood. The major solid components of human bone are collagen (a natural polymer, also found in skin and tendons) and a substituted hydroxyapatite (a natural ceramic, also found in teeth). Although these two components when used separately provide a relatively successful mean of augmenting bone growth, the composite of the two natural materials exceeds this success. This paper provides a review of the most common routes to the fabrication of collagen (Col) and hydroxyapatite (HA) composites for bone analogues. The regeneration of diseased or fractured bones is the challenge faced by current technologies in tissue engineering. Hydroxyapatite and collagen composites (Col-HA) have the potential in mimicking and replacing skeletal bones. Both in vivo and in vitro studies show the importance of collagen type, mineralisation conditions, porosity, manufacturing conditions and crosslinking. The results outlined on mechanical properties, cell culturing and de-novo bone growth of these devices relate to the efficiency of these to be used as future bone implants. Solid free form fabrication where a mould can be built up layer by layer, providing shape and internal vascularisation may provide an improved method of creating composite structures.
In situ detection of progesterone receptor mRNA in the chicken oviduct using probe-on slides. (1990)

A relatively simple, rapid and versatile method for in situ hybridization of mRNA involving the use of probe-on slides is outlined. Chicken progesterone receptor transcripts have been localized in situ in the chick oviduct by using specific hybridization probes. The accumulation of relatively large quantities of progesterone receptor transcripts occurs in diethylstilbestrol (DES)-treated chickens. A uniformly 35S-labeled oligodeoxyribonucleotide probe was incubated with paraffin-embedded sections. Hybridization to the mRNA was found as discrete deposits of silver granules in the glandular and epithelial cells. The ability to tag low amounts of mRNA in the cell by this relatively easy but sensitive protocol allows efficient molecular analysis of developmental expression of a given gene. Probe-on slides should prove useful in any kind of in situ hybridization protocol using frozen sections, paraffin sections or tissue culture cells.
Some principles for designing a wide-area WDM optical network (1996)

We explore design principles for next-generation optical wide-area networks, employing wavelength-division multiplexing (WDM) and targeted to nationwide coverage. This optical network exploits wavelength multiplexers and optical switches in routing nodes, so that an arbitrary virtual topology may be embedded on a given physical fiber network. The virtual topology, which is used as a packet-switched network and which consists of a set of all-optical "lightpaths", is set up to exploit the relative strengths of both optics and electronics-viz. packets of information are carried by the virtual topology "as far as possible" in the optical domain, but packet forwarding from lightpath to lightpath is performed via electronic switching, whenever required. We formulate the virtual topology design problem as an optimization problem with one of two possible objective functions: (1) for a given traffic matrix, minimize the network-wide average packet delay (corresponding to a solution for present traffic demands), or (2) maximize the scale factor by which the traffic matrix can be scaled up (to provide the maximum capacity upgrade for future traffic demands). Since simpler versions of this problem have been shown to be NP-hard, we resort to heuristic approaches. Specifically, we employ an iterative approach which combines "simulated annealing" (to search for a good virtual topology) and "flow deviation" (to optimally route the traffic-and possibly bifurcate its components-on the virtual topology). We do not consider the number of available wavelengths to be a constraint, i.e., we ignore the routing of lightpaths and wavelength assignment for these lightpaths. We illustrate our approaches by employing experimental traffic statistics collected from NSFNET.
Adsorption of human serum albumin: Dependence on molecular architecture of the oppositely charged surface (1999)

We contrast the adsorption of human serum albumin (HSA) onto two solid substrates previously primed with the same polyelectrolyte of net opposite charge to form one of two alternative structures: randomly adsorbed polymer and the “brush” configuration. These structures were formed either by the adsorption of quaternized poly-4-vinylpyridine (QPVP) or by end-grafting QPVP chains of the same chemical makeup and the same molecular weight to surfaces onto which QPVP segments did not adsorb. The adsorption of HSA was quantified by using Fourier transform infrared spectroscopy in attenuated total reflection (FTIR-ATR). The two substrates showed striking differences with regard to HSA adsorption. First, the brush substrate induced lesser perturbations in the secondary structure of the adsorbed HSA, reflecting easier conformational adjustment for longer free segments of polyelectrolyte upon binding with the protein. Second, the penetration of HSA into the brush substrate was kinetically retarded relative to the randomly adsorbed polymer, probably due to both pore size restriction and electrostatic sticking between charged groups of HSA and QPVP molecules. Third, release of HSA from the adsorbed layer, as the ionic strength was increased from a low level up to the high level of 1 M NaCl, was largely inhibited for the brush substrate, but occurred easily and rapidly for the substrate with statistically adsorbed QPVP chains. Finally, even after addition of a strong polymeric adsorption competitor (sodium polystyrene sulfonate), HSA remained trapped within a brush substrate though it desorbed slowly from the preadsorbed QPVP layer. This method to produce irreversible trapping of the protein within a brush substrate without major conformational change may find application in biosensor design.
Ovarian Thecal Cells Produce Transforming Growth Factor-β Which Can Regulate Granulosa Cell Growth* (1987)

Ovarian thecal cells in culture were found to synthesize and secrete transforming growth factor-beta (TGF beta). A component in thecal cell-conditioned medium was immunologically similar to TGF beta, as assessed with a RIA, and inhibited specific binding of TGF beta to its cell surface receptors. Thecal cell-secreted proteins also contained TGF beta biological activity, which was determined by stimulation of soft agar colony formation by AKR-2B indicator cells. Specific TGF beta antibodies precipitated a 25 K protein from radiolabeled thecal cell-secreted protein that comigrated with purified platelet-derived TGF beta. Both bovine thecal cell and rat thecal/interstitial cell preparations produced TGF beta, which required acid treatment to obtain fully active samples. The physiological significance of TGF beta production by thecal cells was addressed through an analysis of the effects of TGF beta on bovine granulosa cell growth. TGF beta inhibited epidermal growth factor stimulation of granulosa cell growth, but alone it had no apparent influence. Observations indicate that ovarian thecal cells produce TGF beta, which can regulate granulosa cell growth and differentiation. Discussion of thecal cell-granulosa cell interactions and the possible functions of TGF beta in the ovary is presented.
Autoradiographic Studies on the Binding Sites of 125I-Adrenomedullin in Rat Tissues. (1998)

Adrenomedullin (AM) is a novel hypotensive peptide isolated from the human pheochromocytoma. In the present study, 125I-AM was intravenously administered to rats and its distribution was examined by autoradiographic (ARG) techniques using wholebody, light microscopic (LM) and electron microscopic (EM) methods. Whole-body-ARG after administration of 125I-AM showed the highest radioactivity in the lung (parenchyma), followed by the renal cortex and the liver. When localization of 125I-AM in the lung was examined by LM-ARG, silver grains were localized over the arteries, capillaries and venules. In the arteries, the endothelial cells of the small arteries (lumen diameter 20-50 μm) were preferentially labelled and there was little labelling on the large arteries. There were few silver grains on the smooth muscle cells along the entire pulmonary vasculature system. EM-ARG showed many silver grains on the endothelial cells of capillaries and venules. Very few silver grains were observed on the lung when an excess amount of unlabelled AM was administered with 125I-AM.These results indicated that 125I-AM specific binding sites are most abundant in the lung, and the major binding sites are on the endothelial cells of small arteries, alveolar capillaries and venules.
3,4-Dihydroisocarbostyril and 1,2,3,4-tetrahydroisoquinoline derivatives of ephedrine (1973)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXT3,4-Dihydroisocarbostyril and 1,2,3,4-tetrahydroisoquinoline derivatives of ephedrineDonald L. Trepanier and Shyam SunderCite this: J. Med. Chem. 1973, 16, 4, 342–347Publication Date (Print):April 1, 1973Publication History Published online1 May 2002Published inissue 1 April 1973https://pubs.acs.org/doi/10.1021/jm00262a007https://doi.org/10.1021/jm00262a007research-articleACS PublicationsRequest reuse permissionsArticle Views167Altmetric-Citations25LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Introduction to Fluorescence Microscopy (2024)

This handbook covers three main areas. First it deals with the physical principles of the phenomenon of fluorescence and fluorescence microscopy (including transmitted versus incident illumination) and gives a detailed description of the various parts of the microscope: lenses, filters, and light sources. It goes on to discuss the main applications of fluorescence microscopy, for example immunofluorescence, microfluorometry (including absorbance and fluorescence photometry), and fluorescence photomicrography. The final chapter, on trouble-shooting, will enable the reader to solve the most common problems in fluorescence microscopy. -- AATA
The Structure of Ethnic Identity of Young Adolescents from Diverse Ethnocultural Groups (1999)

The purpose for this study was to examine the structure and construct validity of a measure of ethnic identity among young adolescents from diverse ethnic groups. Students in sixth, seventh, and eighth grades (N = 5,423) from diverse ethnic groups completed the Multigroup Ethnic Identity Measure (MEIM), measures of psychological well-being and a measure of salience of ethnicity. Factor analyses of data for the three largest ethnic groups (European American, African American, Mexican American) yielded a two-factor structure that corresponded to two theoretical approaches to ethnic identity, as hypothesized. Similar patterns in magnitude of loadings were observed across groups, indicating that the MEIM could be used as a global composite index of ethnic identity. Ethnic identity was related positively to measures of psychological well-being such as coping ability, mastery, self-esteem and optimism, and negatively to measures of loneliness and depression. MEIM scores also were moderately strong and positive with salience (the importance of a person’s own ethnic background in his or her life), across ethnic groups.
Alkene Monooxygenase from Xanthobacter Strain Py2 (1997)

Alkene monooxygenase from Xanthobacter strain Py2 is an inducible enzyme that catalyzes the O2- and NADH-dependent epoxidation of short chain (C2 to C6) alkenes to their corresponding epoxides as the initial step in the utilization of aliphatic alkenes as carbon and energy sources. In the present study, alkene monooxygenase has been resolved from the soluble fraction of cell-free extracts into four components, each of which has been purified to homogeneity, that are obligately required for alkene epoxidation activity. The four required components are 1) a monomeric 35.5-kDa protein containing 1 mol of FAD and a probable 2Fe-2S center; 2) a 13.3-kDa ferredoxin containing a Rieske-type 2Fe-2S cluster; 3) an 11-kDa monomeric protein that contains no detectable cofactors; and 4) a 212-kDa alpha2beta2gamma2 multimeric protein containing four atoms of nonheme iron. The 35.5-kDa protein has been characterized as an NADH reductase. The physiological electron acceptor for the reductase was the Rieske-type ferredoxin, which is proposed to be an intermediate electron carrier between the reductase and terminal catalytic component of the system. The 212-kDa protein was specifically inactivated in cell-free extracts by the mechanism-based inactivator propyne, suggesting that it is the catalytic component and contains the active site(s) for O2 activation and alkene epoxidation. The subunit structure and metal analysis of this component suggest that it contains two diiron centers, one for each alphabetagamma protomeric unit. No specific enzymatic activities could be assigned for the 11-kDa protein, but this component was obligately required for steady-state alkene epoxidation. The alkene monooxygenase components were expressed during growth of Xanthobacter Py2 on aliphatic alkenes or epoxides and repressed during growth on other carbon sources. The electron transfer components of alkene monooxygenase were highly specific: other reductase activities present in Xanthobacter were incapable of transferring electrons to the Rieske-type ferredoxin or substituting for the reductase in the alkene monooxygenase complex. Likewise, other bacterial and plant ferredoxins were unable to substitute for the Rieske-type ferredoxin in mediating electron transfer to the oxygenase. The biochemical properties of alkene monooxygenase described in this study suggest that this enzyme combines elements of both the well-characterized aromatic dioxygenase (two-component electron transfer scheme) and methane monooxygenase (small regulatory protein and diiron oxygenase) multicomponent enzyme systems.
Time Series Anomaly Detection: Detection of Anomalous Drops with Limited Features and Sparse Examples in Noisy Periodic Data (2017)

Google uses continuous streams of data from industry partners in order to deliver accurate results to users. Unexpected drops in traffic can be an indication of an underlying issue and may be an early warning that remedial action may be necessary. Detecting such drops is non-trivial because streams are variable and noisy, with roughly regular spikes (in many different shapes) in traffic data. We investigated the question of whether or not we can predict anomalies in these data streams. Our goal is to utilize Machine Learning and statistical approaches to classify anomalous drops in periodic, but noisy, traffic patterns. Since we do not have a large body of labeled examples to directly apply supervised learning for anomaly classification, we approached the problem in two parts. First we used TensorFlow to train our various models including DNNs, RNNs, and LSTMs to perform regression and predict the expected value in the time series. Secondly we created anomaly detection rules that compared the actual values to predicted values. Since the problem requires finding sustained anomalies, rather than just short delays or momentary inactivity in the data, our two detection methods focused on continuous sections of activity rather than just single points. We tried multiple combinations of our models and rules and found that using the intersection of our two anomaly detection methods proved to be an effective method of detecting anomalies on almost all of our models. In the process we also found that not all data fell within our experimental assumptions, as one data stream had no periodicity, and therefore no time based model could predict it.
Recombinant gibbon interleukin 3 supports formation of human multilineage colonies and blast cell colonies in culture: comparison with recombinant human granulocyte-macrophage colony-stimulating factor (1987)

The genetic sequences encoding the gibbon and human interleukin 3 (IL 3) proteins were molecularly cloned. The amino acid sequence of the mature gibbon IL 3 protein proved to share 93% homology with the corresponding human protein. We examined the effects of biosynthetic (recombinant) gibbon IL 3 on the proliferation and differentiation of an enriched population of human hematopoietic progenitors and compared the results with the effects of recombinant human granulocyte-macrophage colony-stimulating factor (GM-CSF). Gibbon IL 3 supported the formation of various types of single lineage as well as multilineage colonies by My-10+ bone marrow cells in the presence of human erythropoietin (Ep). In contrast, recombinant human GM-CSF supported the formation of single-lineage colonies and only a small number of multilineage colonies. Both IL 3 and GM-CSF had significant erythroid burst-promoting activity (BPA). Delayed addition of gibbon IL 3 to low serum culture of My-10+ marrow cells supported the formation of blast cell colonies with variable but high replating capability. Human GM-CSF was less effective than IL 3 in support of multipotential blast cell colonies. These results are analogous to the effects of murine IL 3 and GM-CSF on murine progenitors and support the notion that the primary factor for multipotential progenitors is IL 3.
Reconstruction of Articular Cartilage Defects with Free Periosteal Grafts:An Experimental Study (1982)

The chondrogenic potential of free autogenous periosteal grafts was studied histologically in 6-month-old rabbits. The grafts were taken from the tibia and transplanted to 7 x 14 mm large artificial defects of the femoral articular cartilage. The results revealed that the defects were repaired and filled after 4 weeks with a hyaline-like cartilage which was histologically similar to the cartilage adjacent to the transplant. The tissue maintained this morphology after 1 year of observation. In control animals where no periosteum was transplanted to the defect, no real cartilage was found. The tissue which partially filled the defect was a variable mixture of fibrous tissue and fibrocartilage.
Surface-induced droplet fusion in microfluidic devices (2007)

Here we demonstrate a new method for droplet fusion based on a surface energy pattern on the walls of a microfluidic device, that does not require active elements nor accurate synchronization of the droplets.
Optimized clinical T2 relaxometry with a standard CPMG sequence (2006)

We demonstrate that a relatively simple change to the CPMG relaxometry sequence parameters from the default setup yields significant improvements in the accuracy and precision of T2 measurements.
Chimeras of α1-Adrenergic Receptor Subtypes Identify Critical Residues That Modulate Active State Isomerization (1996)

We have identified previously two amino acids, one in each of the fifth and sixth transmembrane segments of both the alpha1a-adrenergic receptor and the alpha1b-adrenergic receptor (AR), that account almost entirely for the selectivity of agonist binding by these receptor subtypes (Hwa, J., Graham, R. M., and Perez, D. M. (1995) J. Biol. Chem. 270, 23189-23195). Thus reversal of these two residues, from those found in the native receptor of one subtype to those in the other subtype, produces complementary changes in subtype selectivity of agonist binding. Here we show that mutating only one of these residues in either the alpha1b-AR or the alpha1a-AR to the corresponding residue in the other subtype (Ala204 --> Val for the alpha1b; Met292 --> Leu for the alpha1a-AR) results in chimeras that are constitutively active for signaling by both the phospholipase C and phospholipase A2 pathways. This is evident by an increased affinity for agonists, increased basal phospholipase C and phospholipase A2 activation, and increased agonist potency. Although mutation of the other residue involved in agonist binding selectivity, to the corresponding residue in the other subtype (Leu314 --> Met for the alpha1b-AR; Val185 --> Ala for the alpha1a-AR) does not alter receptor binding or signaling, per se, when combined with the corresponding constitutively activating mutations, the resulting chimeras, Ala204 --> Val/Leu314 --> Met ( alpha1b-AR) and Val185 --> Ala/Met292 --> Leu ( alpha1a-AR), display wild type ligand binding and signaling. A simple interpretation of these results is that the alpha1a- and alpha1b-ARs possess residues that critically modulate isomerization from the basal state, R, to the active state R*, and that the native receptor structures have evolved to select residues that repress active state isomerization. It is likely that the residues identified here modulate important interhelical interactions between the fifth and sixth transmembrane segments that inhibit or promote receptor signaling.
Nanoscopic Templates from Oriented Block Copolymer Films (2000)

Ordered nanoporous films have been generated via selective degradation of self-assembled block copolymer films of polystyrene (PS) and poly(methylmethacrylate) (PMMA), which contain oriented cylindrical microdomains. Deep UV irradiation degrades the PMMA, which can be rinsed away, leaving an ordered array of circular holes in a film of cross-linked PS (see Figure).