gebhart/patrepeval huggingface dataset:
Capture of CO2 from combustion gases in a fluidized bed of CaO (2004)

Abstract Experiments in a pilot‐scale fluidized‐bed reactor have been carried out to investigate the carbonation reaction of CaO, as a potential method for CO 2 capture from combustion flue gases at high‐temperatures. Results show that CO 2 capture efficiencies are very high, while there is a sufficient fraction of CaO in the bed reacting in the fast reaction regime. The total capture capacity of the bed decays with the number of carbonation‐calcination cycles. The experimental CO 2 concentration profiles measured inside the bed during the fast reaction period are interpreted with the KL fluid bed model, by supplying information on sorbent deactivation from laboratory tests. It is concluded that a fluidized bed of CaO can be a suitable reactor to achieve very effective CO 2 capture efficiencies from a combustion flue gas. © 2004 American Institute of Chemical Engineers AIChE J, 50:1614–1622, 2004
F1C fimbriae of a uropathogenic Escherichia coli strain: genetic and functional organization of the foc gene cluster and identification of minor subunits (1990)

The genetic organization of the foc gene cluster has been studied; six genes involved in the biogenesis of F1C fimbriae were identified. focA encodes the major fimbrial subunit, focC encodes a product that is indispensable for fimbria formation, focG and focH encode minor fimbrial subunits, and focI encodes a protein which shows similarities to the subunit protein FocA. Apart from the FocA major subunits, purified F1C fimbriae contain at least two minor subunits, FocG and FocH. Minor proteins of similar size were observed in purified S fimbriae. Remarkably, some mutations in the foc gene cluster result in an altered fimbrial morphology, i.e., rigid stubs or long, curly fimbriae.
CYT387, a novel JAK2 inhibitor, induces hematologic responses and normalizes inflammatory cytokines in murine myeloproliferative neoplasms (2010)

Activating alleles of Janus kinase 2 (JAK2) such as JAK2(V617F) are central to the pathogenesis of myeloproliferative neoplasms (MPN), suggesting that small molecule inhibitors targeting JAK2 may be therapeutically useful. We have identified an aminopyrimidine derivative (CYT387), which inhibits JAK1, JAK2, and tyrosine kinase 2 (TYK2) at low nanomolar concentrations, with few additional targets. Between 0.5 and 1.5muM CYT387 caused growth suppression and apoptosis in JAK2-dependent hematopoietic cell lines, while nonhematopoietic cell lines were unaffected. In a murine MPN model, CYT387 normalized white cell counts, hematocrit, spleen size, and restored physiologic levels of inflammatory cytokines. Despite the hematologic responses and reduction of the JAK2(V617F) allele burden, JAK2(V617F) cells persisted and MPN recurred upon cessation of treatment, suggesting that JAK2 inhibitors may be unable to eliminate JAK2(V617F) cells, consistent with preliminary results from clinical trials of JAK2 inhibitors in myelofibrosis. While the clinical benefit of JAK2 inhibitors may be substantial, not the least due to reduction of inflammatory cytokines and symptomatic improvement, our data add to increasing evidence that kinase inhibitor monotherapy of malignant disease is not curative, suggesting a need for drug combinations to optimally target the malignant cells.
Nanotemplating of Biodegradable Polymer Membranes for Constant‐Rate Drug Delivery (2010)

A nanoporous biodegradable polymer (polycaprolactone) is fabricated utilizing a zinc oxide nanotemplate (see figure). Chemical characterization verifies removal of the template, and preliminary tests on the cytotoxicity demonstrate basic biocompatibility. Diffusion of a model small molecule and a protein are shown to be first and zero order, respectively, indicating these nanoporous membranes may be useful for controlled release of protein-based therapeutics. Detailed facts of importance to specialist readers are published as ”Supporting Information”. Such documents are peer-reviewed, but not copy-edited or typeset. They are made available as submitted by the authors. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
Co‐localization of the neonatal Fcγ receptor and IgG in human placental term syncytiotrophoblasts (1996)

Transfer of maternal IgG through the human placenta furnishes the newborn with passive immunity to a number of infectious agents. The exact mechanism of this transfer is still unknown, but it is agreed that it involves active receptor-mediated transport. The neonatal Fc receptor is a major histocompatibility complex class I-like receptor originally identified in the intestines of newborn rodents. A similar receptor has recently been detected in human placental syncytiotrophoblasts. Using multilabeling fluorescence immunohistochemistry and confocal laser scanning microscopy, we found that the neonatal Fc receptor co-localizes with IgG and beta 2-microglobulin in granules of human placental syncytiotrophoblast. The Fc receptor is not detected on syncytiotrophoblast apical plasma membrane. Localization to the outermost cellular barrier between the fetal and maternal blood further strengthens the role of the Fc receptor in transplacental transport of IgG.
Islet Inflammation in Type 2 Diabetes (2008)

Decreases in both mass and secretory function of insulin-producing beta-cells contribute to the pathophysiology of type 2 diabetes. The histology of islets from patients with type 2 diabetes displays an inflammatory process characterized by the presence of cytokines, apoptotic cells, immune cell infiltration, amyloid deposits, and eventually fibrosis. This inflammatory process is probably the combined consequence of dyslipidemia, hyperglycemia, and increased circulating adipokines. Therefore, modulation of intra-islet inflammatory mediators, in particular interleukin-1 beta, appears as a promising therapeutic approach.
Selective Copper Plating of Polysilicon Surface Micromachined Structures (1998)

Selective electroless copper plating of polysilicon surface micromachined structures has been demonstrated. The encapsulation of free-standing polysilicon structures with copper will allow polysilicon to be used in MEMS applications requiring high conductivity. This copper deposition technique has the advantages of simplifying the metallization process, high deposition rate, low thermal stress, low bending stress, and backside metal coating. Palladium is used as the activated base metal for copper plating. Resisitivity and surface roughness characteristics of the copper are presented.
Transcriptional and functional characterization of genetic elements involved in galacto‐oligosaccharide utilization by B ifidobacterium breve   UCC 2003 (2012)

Several prebiotics, such as inulin, fructo-oligosaccharides and galacto-oligosaccharides, are widely used commercially in foods and there is convincing evidence, in particular for galacto-oligosaccharides, that prebiotics can modulate the microbiota and promote bifidobacterial growth in the intestinal tract of infants and adults. In this study we describe the identification and functional characterization of the genetic loci responsible for the transport and metabolism of purified galacto-oligosaccharides (PGOS) by Bifidobacterium breve UCC2003. We further demonstrate that an extracellular endogalactanase specified by several B. breve strains, including B. breve UCC2003, is essential for partial degradation of PGOS components with a high degree of polymerization. These partially hydrolysed PGOS components are presumed to be transported into the bifidobacterial cell via various ABC transport systems and sugar permeases where they are further degraded to galactose and glucose monomers that feed into the bifid shunt. This work significantly advances our molecular understanding of bifidobacterial PGOS metabolism and its associated genetic machinery to utilize this prebiotic.
Using a simulated learning environment (2010)

Stilwell is a simulation environment designed for postgraduate emergency care staff. It encourages participants to make less obvious diagnoses of patients who have presented to emergency departments, and to consider a wide range of factors when making treatment and management decisions.
Microfluidics: A new cosset for neurobiology (2008)

Recently, microfluidic systems have shown great potential in the study of molecular and cellular biology. With its excellent properties, such as miniaturization, integration and automation, to name just a few, microfluidics creates new opportunities for the spatial and temporal control of cell growth and environmental stimuli in vitro. In the field of neuroscience, microfluidic devices offer precise control of the microenvironment surrounding individual cells, and the delivery of biochemical or physical cues to neural networks or single neurons. The intent of this review is to outline recent advances in microfluidic-based applications in neurobiology, with emphasis on neuron culture, neuron manipulation, neural stem cell differentiation, neuropharmacology, neuroelectrophysiology, and neuron biosensors. It also aims to stimulate development of microfluidic-based applications in neurobiology by involving scientists from various disciplines, especially neurobiology and microtechnology.
Dichotomy of Autoreactive Th1 and Th2 Cell Responses to Desmoglein 3 in Patients with Pemphigus Vulgaris (PV) and Healthy Carriers of PV-Associated HLA Class II Alleles (2003)

Pemphigus vulgaris (PV) is the most severe autoimmune bullous skin disorder and is primarily associated with circulating autoantibodies (autoAb) against desmoglein 3 (Dsg3). In light of recent evidence that autoreactive T cells are critical for the induction and regulation of Ab production, the goal of this study was to characterize and quantitate autoreactive T cells in patients with PV and healthy controls. Peripheral Dsg3-reactive Th cells from 28 patients with acute-onset, chronic active, and remittent PV were quantitated by MACS secretion assay. Dsg3-reactive Th2 cells were detected at similar frequencies in all studied PV patients, while the number of autoreactive Th1 cells exceeded those of Th2 cells in chronic active PV. In contrast, healthy carriers of the PV-associated HLA class II alleles, DRB1*0402 and DQB1*0503, exhibited exclusively Dsg3-reactive Th1 cell responses, while healthy carriers of other HLA class II alleles did not. Moreover, the presence of IgG1 and IgG4 against Dsg3 was directly related to the ratio of Dsg3-reactive Th1/Th2 cells. T cell recognition of Dsg3 was restricted by HLA-DRB1*0402 and DQB1*0503 in PV patients and Dsg3-responsive healthy donors. These observations strongly suggest 1) that the appearance of Dsg3-reactive Th2 cells is restricted to patients with PV; 2) that specific HLA class II alleles that are prevalent in PV are critical for T cell recognition of Dsg3 in PV patients and Dsg3-responsive healthy donors; and 3) that autoAb production is associated with both Th1 and Th2 cells.
8‐(3‐Isothiocyanatostyryl)caffeine is a selective, irreversible inhibitor of striatal A2‐Adenosine receptors (1993)

8-(3-Isothiocyanatostyryl)caffeine (ISC) was synthesized and shown to inhibit selectively the binding of [(3)H]CGS 21680 (an A(2a)-selective agonist) at adenosine receptors in striatal membranes. The K(i) value at A(2a)-receptors was found to be 110 nM (rat), with selectivity ratios for A(2a) versus A(1)-receptors in rat, guinea pig, bovine, and rabbit striatum of >100-fold. Preincubation of membranes with ISC caused a dose-dependent, irreversible antagonism of the binding of [(3)H]CGS 21680, with an IC(50) value of 3 μM. The irreversibility is likely due to the presence of the chemically reactive isothiocyanate group, since the binding of the corresponding analogue in which the isothiocyanate was replaced with a chloro group was completely reversible. The potency of ISC to irreversibly inhibit the binding of [(3)H]CGS 21680 in several species varied in the order rat ≈ guinea pig > bovine ≈ rabbit. In all four species, binding of the A(1)-selective agonist [(3)H]R-N(6)-phenylisopropyladenosine was not diminished by pre-treatment with 2 μM ISC. The kinetics of irreversible inhibition of rat A(2a)-receptors by 2 μM ISC gave a t(1/2) of approximately 3 min. Following partial inactivation, the remaining rat A(2a)-binding sites retained the same K(d) value as in control membranes for saturation by [(3)H]CGS 21680. Thus, ISC appears to be a selective affinity label for A(2a)- versus A(1)-receptors in the brain.
Language model adaptation for statistical machine translation with structured query models (2004)

We explore unsupervised language model adaptation techniques for Statistical Machine Translation. The hypotheses from the machine translation output are converted into queries at different levels of representation power and used to extract similar sentences from very large monolingual text collection. Specific language models are then build from the retrieved data and interpolated with a general background model. Experiments show significant improvements when translating with these adapted language models.
Modifications of the behavioral profile of non-competitive NMDA receptor antagonists, memantine, amantadine and (+)MK-801 after chronic administration (1999)

Non-competitive N-methyl-D-aspartate (NMDA) receptor antagonists show antiparkinsonian-like activity in animal models, and possess neuroprotective properties. However they also induce a number of behavioral side effects in rodents at higher doses; these include learning impairment, hyperlocomotion, and ataxia. The present study focused on the possible development of tolerance, or sensitization, to any of these effects after sustained administration, either by repeated injection or continuous infusion. When memantine or (+)MK-801 (20 and 0.31 mg/kg/day respectively) were either infused or repeatedly injected for 14 days, tolerance was observed to their learning impairing effect at high doses, in a passive avoidance test. Tolerance to their ataxic effect developed after repeated administration ((+)MK-801 and memantine), or after infusion (memantine). Sensitization to the locomotor stimulation was seen following repetitive injections of memantine for 14 days, but not seen with (+)MK-801. In animals with an unilateral 6-OHDA lesion of the nigrostriatal system, acute administration of memantine caused ipsilateral rotations, which were augmented following 14 days of infusion. The potency of amantadine to antagonize neuroleptic-induced catalepsy was unchanged following either infusion or repeated injections. The various acute effects of non-competitive NMDA receptor antagonists were modified differently by sustained treatment (i.e. tolerance to learning impairment and ataxia; sensitization to memantine's locomotor stimulation). The anti-cataleptic activity of amantadine remained unaltered. However, differences between drugs and the two treatment regimens (i.e. repetitive versus continuous treatments) were apparent.
Effect of naltrexone and its derivatives, nalmefene and naltrindole, on conditioned anticipatory behaviour and saccharin intake in rats (1997)

Drug craving, the desire to re-experience the effects of a psychoactive substance, may be an important influence on drug-seeking and drug-taking behaviour. In rats, drug-seeking behaviour can be operationalized as conditioned anticipatory behaviour, evidenced by frequent visits to, and an increased time spent and distance travelled in, the drug administration area prior to the availability of the reinforcer. The effects of the opioid antagonist, naltrexone, and its derivatives, nalmefene and naltrindole, on conditioned anticipatory behaviour and drinking-associated behaviour and fluid intake during the access phase were examined. Male Wistar rats were trained to consume 0.1% saccharin and water in a distinct environment in a free-choice limited-access procedure. Naltrexone (0.3, 1 mg/kg) decreased conditioned anticipatory behaviour and drinking-associated behaviour in the saccharin zone without affecting the corresponding behaviour in the water zone. Its derivatives had different effects. Nalmefene (0.1 mg/kg) increased drinking-associated behaviour but not conditioned anticipatory behaviour, whereas naltrindole (1, 2 mg/kg) modestly decreased conditioned anticipatory behaviour but not drinking-associated behaviour. Naltrexone (0.3, 1 mg/kg) and naltrindole (1, 2 mg/kg), but not nalmefene, selectively decreased saccharin intake. These findings suggest that the blockade of selective opioid receptors may differentially alter conditioned anticipatory behaviour, drinking-associated behaviour and consumption levels, and that these behaviours can be modified separately.
The Penaeid Shrimp Viruses TSV, IHHNV, WSSV, and YHV (1999)

ABSTRACT Viral diseases have emerged during this decade as serious economic impediments to successful shrimp farming. While nearly 20 distinct viruses or groups of viruses are known to infect penaeid shrimp, only four, WSSV, YHV, IHHNV, and TSV, pose a threat to the future of penaeid shrimp culture in the Western Hemisphere. TSV and IHHNV have caused serious disease epizootics throughout the Americas and Hawaii. IHHNV was described nearly 20 years ago when it was found to be responsible for cumulative losses of cultured Penaeus stylirostris that often exceed 90%. The threat of high mortalities posed by IHHNV has historically curtailed interest in the culture of this species in favor of the more IHHNV-resistant P. vannamei. While relatively resistant, IHHNV nonetheless infects P. vannamei and causes runt deformity syndrome (RDS) in which affected shrimp display reduced growth, highly variable sizes, lower production, and sometimes reduced survival. Taura Syndrome in P. vannamei is the virtual “mirror image” of IHHN disease in P. stylirostris. Following its recognition in 1992 as a distinct disease of P. vannamei in Ecuador, Taura Syndrome and its viral agent TSV spread rapidly throughout many of the shrimp farming regions of the Americas. Cumulative mortalities due to TSV in affected juvenile P. vannamei populations have ranged from 40 to 95%. Because P. stylirostris was found to be innately TSV-resistant, genetically selected IHHNV-resistant lines of this species disease are being developed and marketed in the Americas. Some shrimp farmers are using domesticated, selected stocks of P. vannamei that show improved resistance to TSV, while others have continued to use wild stocks that are also showing increased resistance, perhaps through intense natural selection. The viruses of the Yellow Head Disease (YHV) and the White Spot Syndrome (WSSV) were first recognized in 1991-92 in Asia, and by 1996 the two diseases had spread and had caused major pandemics throughout much of the shrimp farming regions of East Asia, Southeast Asia, Indonesia, and India. In late 1995, WSSV was found in North America for the first time in P. setiferus at a shrimp farm in south Texas. WSSV has since been detected in cultured and wild shrimp, crabs, and freshwater crayfish at multiple sites in the eastern and southeastern U.S., as well as being commonly found (along with YHV) in imported frozen commodity shrimp. Because Western Hemisphere penaeids are highly susceptible to WSSV and YHV, the introduction and establishment of either of the viruses poses a significant threat to the shrimp farming industry. The available detection methods for IHHNV, TSV, WSSV, and YHV include traditional methods that employ gross signs, clinical history, histopathology, and bioassay with susceptible shrimp hosts. Molecular and serological methods have also been developed, and specific gene probes, monoclonal antibodies, or PCR methods are readily available for each of the four viruses.
Cuticular Lipid Composition, Surface Structure, and Gene Expression in Arabidopsis Stem Epidermis (2005)

All vascular plants are protected from the environment by a cuticle, a lipophilic layer synthesized by epidermal cells and composed of a cutin polymer matrix and waxes. The mechanism by which epidermal cells accumulate and assemble cuticle components in rapidly expanding organs is largely unknown. We have begun to address this question by analyzing the lipid compositional variance, the surface micromorphology, and the transcriptome of epidermal cells in elongating Arabidopsis (Arabidopsis thaliana) stems. The rate of cell elongation is maximal near the apical meristem and decreases steeply toward the middle of the stem, where it is 10 times slower. During and after this elongation, the cuticular wax load and composition remain remarkably constant (32 microg/cm2), indicating that the biosynthetic flux into waxes is closely matched to surface area expansion. By contrast, the load of polyester monomers per unit surface area decreases more than 2-fold from the upper (8 microg/cm2) to the lower (3 microg/cm2) portion of the stem, although the compositional variance is minor. To aid identification of proteins involved in the biosynthesis of waxes and cutin, we have isolated epidermal peels from Arabidopsis stems and determined transcript profiles in both rapidly expanding and nonexpanding cells. This transcriptome analysis was validated by the correct classification of known epidermis-specific genes. The 15% transcripts preferentially expressed in the epidermis were enriched in genes encoding proteins predicted to be membrane associated and involved in lipid metabolism. An analysis of the lipid-related subset is presented.
Phenylboronic Acid Monolayer-Modified Electrodes Sensitive to Sugars (2005)

The surface of a gold (Au) electrode was modified with 4-mercaptophenylboronic acid (MPBA) and dithiobis(4-butyrylamino-m-phenylboronic acid) (DTBA-PBA) to prepare sugar-sensitive electrodes. MPBA and DTBA-PBA formed well-packed monomolecular layers on the Au electrode through a sulfur-Au bond. The MPBA- and DTBA-PBA-modified electrodes exhibited a nearly reversible cyclic voltammogram (CV) for the Fe(CN)(6)(3-)(/4-) ion in acidic solution, while the CVs were significantly attenuated in alkaline media as a result of addition of OH(-) ion to the boron atom to generate the negatively charged surface. In other words, the negatively charged monolayers blocked the surface of the Au electrode from the access of the Fe(CN)(6)(3-)(/4-) ion. The pK(a) values of the addition equilibrium of the OH(-) ion to the MPBA and DTBA-PBA monolayers were estimated to be 9.2 +/- 0.1 and 8.0 +/- 0.2, respectively, on the basis of the pH-dependent peak current (i(p)) in the CV of the Fe(CN)(6)(3-)(/4-) ion. On the other hand, in the presence of sugars, the addition of the OH(-) ion was accelerated by forming the phenylboronate esters of sugars on the surface of the monolayers. The pK(a) values for the MPBA and DTBA-PBA monolayers were 8.3 +/- 0.1 and 7.2 +/- 0.1, respectively, in the presence of 50 mM D-fructose. The MPBA- and DTBA-PBA-modified electrodes can be used for determining sugars on the basis of the change in i(p) of the Fe(CN)(6)(3-)(/4-) ion in the presence of sugars. The calibration curves useful for determining 1-100 mM D-glucose, D-mannose, and D-fructose were obtained.