gebhart/patrepeval huggingface dataset:
Annual hazard rates of recurrence for breast cancer after primary therapy. (1996)

Patients 5 years postsurgery for breast cancer appear to have a very slowly decreasing hazard of recurrence. The mean hazard of recurrence between years 5 to 12 postsurgery is 4.3% per year. This group of patients may be well suited for trials evaluating cytostatic drugs or differentiating agents.
Evolution of Neutralizing Antibody Response against HIV Type 1 Virions and Pseudovirions in Multicenter AIDS Cohort Study Participants (1998)

Changes in neutralizing antibody (NA) titers in stored sera collected over 5 years from 10 participants in the Multicenter AIDS Cohort Study (MACS) were evaluated. The participants were HIV-1 infected on enrollment in the MACS, and remained AIDS free during the 5-year study interval. Seven viruses derived from molecular clones were used in NA assays; five of the viruses were T tropic (NL4-3, ALA1, NY5, SF2, and Z2Z6) and two were M tropic [AD8 and NL(SF162)]. In addition, pseudoviruses (PVs) were constructed that expressed envelope genes from NL4-3, ALA1, AD8, and SF162 and from primary viruses from two MACS participants (PV-9 and PV-10). There was significant correlation between NA titers obtained in four of five virus/PV comparisons, while the SF162 PV was more sensitive to NA than the corresponding virus. Comparable changes in NA titers were detected using viruses and PVs. Fourfold or greater increases in NA titers were noted in each of the participants, involving recognition of one to five of the nine strains tested. In some patients these NA titer changes appeared as discrete episodes of immune responses, while in others there may have been either multiple episodes or continuous evolution of the NA responses. The data indicate that changes in NA specificity occur during HIV-1 infection, which may result from the occurrence of neutralization escape mutation. The use of PVs for the study of phenotypic characteristics of envelope glycoproteins should facilitate the study of neutralization escape mutation in HIV-1 infection.
Three Adjacent Serines in the Extracellular Domains of the CaR Are Required for l-Amino Acid-mediated Potentiation of Receptor Function (2002)

The extracellular calcium (Ca(2+)(o))-sensing receptor (CaR) is a key player in Ca(2+)(o) homeostasis. The activity of CaR can be potentiated by various l-amino acids. In this study, we examined whether conserved amino acid residues involved in the binding of glutamate to metabotropic glutamate receptors (mGluRs) also participate in the potentiation of the activity of CaR by l-phenylalanine. Ser-170 corresponding to Thr-188 in rat mGluR1a appears to be important for the modulating actions of phenylalanine. In the presence of phenylalanine, a mutant CaR with a single mutation S170A showed no significant decrease in its EC(50) for stimulation by Ca(2+)(o) and a modest increase in its maximal activity. In addition, mutating Ser-169 and Ser-171 together with Ser-170 yielded a more complete block of the phenylalanine modulation than did the single mutation. The presence of the triple mutation, S169A/S170A/S171A, also eliminated phenylalanine potentiation of the activities of heterodimeric receptors in which one of the monomeric receptors had intact triple serines (A877Stop). The putative amino acid binding site of the CaR is probably close to or structurally dependent on the Ca(2+)(o) binding sites of the receptor, because mutant CaRs with mutations in the putative amino acid binding site exhibited severely reduced responses to Ca(2+)(o).
The isolation and identification of multiple forms of the neutrophil granule peptides from human leukemic cells. (1991)

HP-1 is a 30-residue cysteine- and arginine-rich peptide of the human neutrophil primary granule and is the most abundant human representative of the family of peptides variously called defensins and corticostatins. Peptides belonging to this family have many biological activities including the non-oxidative destruction of ingested microorganisms, the inhibition of adrenocorticotropin-stimulated synthesis of glucocorticoids, monocyte chemotaxis, the non-cytolytic inhibition of [3H]thymidine incorporation in HL-60 promyelocyte-like cells and the stimulation of nifedipine-sensitive calcium channels. Using a combination of reversed-phase and size-exclusion high performance liquid chromatography and an HP-1 radio-immunoassay, three immunoreactive peptides were detected and isolated from the promyelocyte-like cell line, HL-60, and from leukocytes of patients with chronic myelogenous and chronic lymphocytic leukemias. One of these peptides was HP-1 itself. A second was identified by gas-phase Edman microsequencing as an amino-terminally extended fragment of the HP-1 precursor which we call HP1-56. The third is likely to arise from enzymatic cleavage of the precursor at a dibasic site. Of the leukemic cells the greatest amount of HP1-56 relative to HP-1 was found in cells from a patient in myeloblastic crisis but overall the richest source of HP1-56 relative to HP-1 was found to be in fetal lung tissue. HP1-56 is difficult to detect in normal peripheral neutrophils and its presence in cells that are actively biosynthesizing primary granule components such as HL-60 may make it useful for studying the biosynthesis of granule polypeptides, their ontogeny, and possibly as a marker protein for leukemic diseases.
HLA Peptide Length Preferences Control CD8+ T Cell Responses (2013)

Class I HLAs generally present peptides of 8-10 aa in length, although it is unclear whether peptide length preferences are affected by HLA polymorphism. In this study, we investigated the CD8(+) T cell response to the BZLF1 Ag of EBV, which includes overlapping sequences of different size that nevertheless conform to the binding motif of the large and abundant HLA-B*44 supertype. Whereas HLA-B*18:01(+) individuals responded strongly and exclusively to the octamer peptide (173)SELEIKRY(180), HLA-B*44:03(+) individuals responded to the atypically large dodecamer peptide (169)EECDSELEIKRY(180), which encompasses the octamer peptide. Moreover, the octamer peptide bound more stably to HLA-B*18:01 than did the dodecamer peptide, whereas, conversely, HLA-B*44:03 bound only the longer peptide. Furthermore, crystal structures of these viral peptide-HLA complexes showed that the Ag-binding cleft of HLA-B*18:01 was more ideally suited to bind shorter peptides, whereas HLA-B*44:03 exhibited characteristics that favored the presentation of longer peptides. Mass spectrometric identification of > 1000 naturally presented ligands revealed that HLA-B*18:01 was more biased toward presenting shorter peptides than was HLA-B*44:03. Collectively, these data highlight a mechanism through which polymorphism within an HLA class I supertype can diversify determinant selection and immune responses by varying peptide length preferences.
Daily Rhythmic and Non-Rhythmic Variations of Follitropin, Lutropin, Testosterone, and Sex-Hormone-Binding Globulin in Men (1996)

The circadian rhythmic variations of the serum concentrations of follitropin, lutropin, sex-hormone-binding globulin and testosterone, the ratio between the serum concentrations of testosterone and sex-hormone-binding globulin, and the salivary concentration of testosterone were investigated in a group of 13 apparently healthy men. Venous blood and salivary specimens were collected at 4-h intervals over a 24-h period. The circadian rhythms were studied by using a periodic function resulting from the sum of two cosine functions with periods of 24 and 12 h. The serum concentrations of follitropin and lutropin showed no significant rhythmic variations. For the salivary concentration of testosterone and for the ratio between the serum concentrations of testosterone and sex-hormone-binding globulin, only the cosine function with a period of 24 h was significant. Serum concentrations of sex-hormone binding globulin and testosterone were significantly affected by 24- and 12-h rhythmic components. Of the quantities studied, the salivary concentration of testosterone showed the greatest daily rhythmic variation (28.8% of the mean estimated over rhythm).
Evidence That the M2 Membrane-Spanning Region Lines the Ion Channel Pore of the Nicotinic Receptor (1988)

Site-directed mutagenesis and expression in Xenopus oocytes were used to study acetylcholine receptors in which serine residues (i) were replaced by alanines (alpha, delta subunits) or (ii) replaced a phenylalanine (beta subunit) at a postulated polar site within the M2 transmembrane helix. As the number of serines decreased, there were decreases in the residence time and consequently the equilibrium binding affinity of QX-222, a quaternary ammonium anesthetic derivative thought to bind within the open channel. Receptors with three serine-to-alanine mutations also displayed a selective decrease in outward single-channel currents. Both the direction of this rectification and the voltage dependence of QX-222 blockade suggest that the residues mutated are within the aqueous pore of the receptor and near its cytoplasmic (inner) surface.
Filensin: a new vimentin-binding, polymerization-competent, and membrane-associated protein of the lens fiber cell. (1991)

We have studied the molecular properties of a 100-kD protein, termed filensin, which we have isolated from porcine lens membranes. Filensin represents a membrane-associated element, resistant to salt and nonionic detergent treatment, and extractable only by alkali or high concentrations of urea. By indirect immunofluorescence and immunoelectron microscopy, this protein can be localized at the periphery of the lens fiber cells. Immunochemical analysis suggests that filensin originates from a larger 110-kD component which is abundantly expressed in lens but not in other tissues. Purified filensin polymerizes in a salt-dependent fashion and forms irregular fibrils (integral of 10 nm in diameter) when reconstituted into buffers of physiological ionic strength and neutral pH. Radiolabeled filensin binds specifically to lens vimentin under isotonic conditions, as demonstrated by affinity chromatography and ligand-blotting assays. By the latter approach, filensin also reacts with a 47-kD peripheral membrane protein of the lens cells. Purified filensin binds to PI, a synthetic peptide modelled after a segment of the COOH-terminal domain of peripherin (a type III intermediate filament protein highly homologous to vimentin), but not to various other peptides including the NH2-terminal headpiece of vimentin and derivatives of its middle (rod) domain. The filensin-PI binding is inhibited by purified lamin B, which is known to interact in vitro with PI (Djabali, K., M.-M. Portier, F. Gros, G. Blobel, and S. D. Georgatos. 1991. Cell. 64:109-121). Finally, limited proteolysis indicates that the filensin-vimentin interaction involves a 30-kD segment of the filensin molecule. Based on these observations, we postulate that the lens fiber cells express a polymerization-competent protein which is tightly associated with the plasma membrane and has the potential to serve as an anchorage site for vimentin intermediate filaments.
Platelet Glycoprotein IIb/IIIa Receptors in Cardiovascular Medicine (1995)

Platelets have a key role in atherosclerosis, thrombosis, and acute coronary syndromes. Therapeutic manipulation of platelet function has focused principally on the use of aspirin, which has proved effective in many clinical situations, despite its relatively weak antiplatelet action. More recently, the platelet glycoprotein IIb/IIIa receptor has been identified as the pivotal mediator of platelet aggregation, making it a logical target for control of the platelet response to vascular injury. This review summarizes the current state of knowledge of the biology of glycoprotein IIb/IIIa receptors and examines the development of agents that inhibit these receptors — a diverse group of . . .
THE THERMODYNAMIC STABILITY OF PROTEINS (1987)

Many bacterial clustered regularly interspaced short palindromic repeats (CRISPR)–CRISPR-associated (Cas) systems employ the dual RNA–guided DNA endonuclease Cas9 to defend against invading phages and conjugative plasmids by introducing site-specific ...Read More
MUC1 Enhances Tumor Progression and Contributes Toward Immunosuppression in a Mouse Model of Spontaneous Pancreatic Adenocarcinoma (2008)

MUC1, a membrane tethered mucin glycoprotein, is overexpressed and aberrantly glycosylated in >80% of human ductal pancreatic adenocarcinoma. However, the role of MUC1 in pancreatic cancer has been elusive, partly due to the lack of an appropriate model. We report the characterization of a novel mouse model that expresses human MUC1 as a self molecule (PDA.MUC1 mice). Pancreatic tumors arise in an appropriate MUC1-tolerant background within an immune-competent host. Significant enhancement in the development of pancreatic intraepithelial preneoplastic lesions and progression to adenocarcinoma is observed in PDA.MUC1 mice, possibly due to increased proliferation. Tumors from PDA.MUC1 mice express higher levels of cyclooxygenase-2 and IDO compared with PDA mice lacking MUC1, especially during early stages of tumor development. The increased proinflammatory milieu correlates with an increased percentage of regulatory T cells and myeloid suppressor cells in the pancreatic tumor and tumor draining lymph nodes. Data shows that during pancreatic cancer progression, MUC1-mediated mechanisms enhance the onset and progression of the disease, which in turn regulate the immune responses. Thus, the mouse model is ideally suited for testing novel chemopreventive and therapeutic strategies against pancreatic cancer.
Topical NSAIDs Effect on Corneal Sensitivity (2015)

All 4 currently available NSAIDs demonstrated anesthetic effects similar to brand diclofenac and brand ketorolac.
Protective Effect of Curcumin Against Isoproterenol-Induced Myocardial Infarction in Adult Male Albino Rat (2011)

Background: Myocardial Infarction (MI) is one of the most common cardiovascular diseases. Curcumin has been used in traditional Chinese and Indian medicine to treat a variety of diseases. It is safe and effective due to its anti-oxidant and anti-inflammatory properties. Aim of the Work: This study was conducted to investigate the possible protective role of curcumin oral administration in experimental MI induced by isoproterenol (ISO) using biochemical and histological techniques. Materials and Methods: This study was carried out on thirty-two male adult albino rats, divided into four equal groups. Group I was the normal control group. Group II was a sham control group that was divided into two subgroups: IIa and IIb, four rats each; they received distilled water and curcumin respectively. Group III received ISO. Group IV received both curcumin and ISO. Animals of all groups were sacrificed one day after the last dose of ISO. The serum cardiac marker enzymes Creatine Kinase (CK) and its myocardial isoenzyme (CK-MB) were estimated. Specimens from the left ventricle were subjected to light and electron microscopic studies. Results: There was significant increase in serum CK and CK-MB in ISO-treated group compared to the control and sham control groups. Treatment with curcumin before ISO decreased significantly these enzymes. Isoprotrenol administration resulted in foci of separation and fragmentation of the muscle fibers. There was no distinction between the dark and light bands and obscured Z lines. Some of the fragmented cardiomyocytes lost their nuclei while others revealed pyknotic or distorted nuclei. Mononuclear cell infiltration, areas of haemorrhage, severe edema and cellular homogenicity were observed. Mitochondria appeared variable in size and shape. They were swollen and less in number as compared to the control sections. Administration of curcumin before ISO showed sound organization of the muscle fibers similar to that of control sections and minimal mononuclear cell infiltration. The mitochondria were of similar number to the control group but they were swollen and showed ruptured membranes and cristae. Conclusions: curcumin administration minimized elevation of plasma cardiac enzyme markers CK and CK–MB following experimental myocardial injury by ISO administration and preserved the normal histological architecture of the myocardium. This beneficial effect of curcumin was mostly related to its antioxidant and anti-inflammatory properties
Cuando la audiencia es el mundo (2006)

El cibersitio The Living Stories -www.livingstories.org.uk- se creo a partir de extractos de audio digital procedentes de extensas entrevistas de historias de vida de treinta personas con hemofilia y VIH. Este articulo compartira las experiencias de creacion del cibersitio y explorara como el objetivo del cibersitio y la sensibilidad del contenido presento algunos autenticos retos. El analisis se centrara en dos importantes areas; en primer lugar, ?al permitir el acceso a este material a traves de Internet, hemos alterado dramaticamente la audiencia que los entrevistados originalmente preveian? Y si es asi, ?como podemos aceptar esto? En segundo lugar, ?al crear un cibersitio como este hemos sido seducidos por las convenciones propias de los cibersitios seleccionando y editanto breves y elocuentes extractos de las entrevistas de historias de vida y, por tanto, dando como resultado una fuente que refleja debilmente la coleccion original de historias de vida? Este articulo explorara estas dos areas de interes y muestra como fueron satisfactoriamente resueltas
A versatile system for stable generation of uniform droplets (1991)

A system for the production of liquid droplets of uniform size and velocity is described. The precise control of the operating fluid provided by this system allows the generator to function in a droplet-on-demand, burst, or continuous mode of operation. The basic component of the uniform droplet generator is a radially contracting piezoelectric cylinder which forces liquid through a glass-capillary nozzle. Droplet diameters ranging from 5 to 500 μm have been produced by appropriate selection of nozzle aperture and operating mode. Further control of size, velocity, and interdroplet spacing is exercised through the voltage- and fluid-control elements of the system. In addition to its ability to operate in any orientation, the droplet generator is designed with a small cross section and a water cooling feature for operation in coflowing, elevated-temperature environments. The uniform-droplet-generation system has exhibited long-term stability in operations ranging from a single isolated droplet to a stream of calibration-standard droplets separated by center-to-center spacings of less than two diameters. Its capabilities in controlling droplet development and dynamics make it an attractive candidate for use in a wide range of liquid-droplet applications.
Influenza Virus Assembly: Effect of Influenza Virus Glycoproteins on the Membrane Association of M1 Protein (2000)

Influenza virus matrix protein (M1), a critical protein required for virus assembly and budding, is presumed to interact with viral glycoproteins on the outer side and viral ribonucleoprotein on the inner side. However, because of the inherent membrane-binding ability of M1 protein, it has been difficult to demonstrate the specific interaction of M1 protein with hemagglutinin (HA) or neuraminidase (NA), the influenza virus envelope glycoproteins. Using Triton X-100 (TX-100) detergent treatment of membrane fractions and floatation in sucrose gradients, we observed that the membrane-bound M1 protein expressed alone or coexpressed with heterologous Sendai virus F was totally TX-100 soluble but the membrane-bound M1 protein expressed in the presence of HA and NA was predominantly detergent resistant and floated to the top of the density gradient. Furthermore, both the cytoplasmic tail and the transmembrane domain of HA facilitated binding of M1 to detergent-resistant membranes. Analysis of the membrane association of M1 in the early and late phases of the influenza virus infectious cycle revealed that the interaction of M1 with mature glycoproteins which associated with the detergent-resistant lipid rafts was responsible for the detergent resistance of membrane-bound M1. Immunofluorescence analysis by confocal microscopy also demonstrated that, in influenza virus-infected cells, a fraction of M1 protein colocalized with HA and associated with the HA in transit to the plasma membrane via the exocytic pathway. Similar results for colocalization were obtained when M1 and HA were coexpressed and HA transport was blocked by monensin treatment. These studies indicate that both HA and NA interact with influenza virus M1 and that HA associates with M1 via its cytoplasmic tail and transmembrane domain.
The UCSC Genome Browser Database: update 2006 (2005)

The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major model organisms. Genome annotations typically include assembly data, sequence composition, genes and gene predictions, mRNA and expressed sequence tag evidence, comparative genomics, regulation, expression and variation data. The database is optimized to support fast interactive performance with web tools that provide powerful visualization and querying capabilities for mining the data. The Genome Browser displays a wide variety of annotations at all scales from single nucleotide level up to a full chromosome. The Table Browser provides direct access to the database tables and sequence data, enabling complex queries on genome-wide datasets. The Proteome Browser graphically displays protein properties. The Gene Sorter allows filtering and comparison of genes by several metrics including expression data and several gene properties. BLAT and In Silico PCR search for sequences in entire genomes in seconds. These tools are highly integrated and provide many hyperlinks to other databases and websites. The GBD, browsing tools, downloadable data files and links to documentation and other information can be found at http://genome.ucsc.edu/.
Synthesis and Characterization of Hydroxyapatite Nanopowders by Emulsion Technique (2003)

Nanocrystalline HAp powder was synthesized using surfactant template systems. Composition of the microemulsion and synthesis parameters had significant effect on the formation of HAp nanopowder and their surface area and morphology. Powders were prepared with a surface area of 130 m2/g and particle size between 30 and 50 nm with needle shape and spherical morphology. Nanocrystalline hydroxyapatite (HAp) powder was synthesized using the reverse micelle-processing route. Cyclohexane was used as the oil phase, mixed poly(oxyethylene)5 nonylphenol ether (NP-5) and poly(oxyethylene)12 nonylphenol ether (NP-12) as the surfactant phase, and a solution of Ca(NO3)2 and H3PO4 was used as the aqueous phase. The powders were characterized by BET surface area analyzer, powder X-ray diffraction, and transmission electron microscopy. It was found that experimental conditions such as aqueous/organic phase volume ratio, pH, aging time, aging temperature, and metal ion concentration in the aqueous phase affected the crystalline phase, surface area, particle size, and morphology of HAp nanopowders. With the use of this technique, nanopowders were prepared with different morphology depending on the reaction parameters.
Bladder Inhibition by Electrical Stimulation of the Perianal Skin (1986)

Transcutaneous electrical stimulation was applied to the perianal skin of 25 patients with frequency, urgency or incontinence. Repeated cystometrogram during this stimulation disclosed suppression of detrusor activity, inhibition of detrusor instability in 4 of 8 patients and increase of maximum cystometric capacity in 5 of 25 patients. Electromyographic activity of the anal sphincter muscle increased in all the 25 patients. Poststimulation improvement was observed clinically in 9 of 12 patients.