gebhart/patrepeval huggingface dataset:
Dictionary Learning and Time Sparsity for Dynamic MR Data Reconstruction (2014)

The reconstruction of dynamic magnetic resonance data from an undersampled k-space has been shown to have a huge potential in accelerating the acquisition process of this imaging modality. With the introduction of compressed sensing (CS) theory, solutions for undersampled data have arisen which reconstruct images consistent with the acquired samples and compliant with a sparsity model in some transform domain. Fixed basis transforms have been extensively used as sparsifying transforms in the past, but recent developments in dictionary learning (DL) have been shown to outperform them by training an overcomplete basis that is optimal for a particular dataset. We present here an iterative algorithm that enables the application of DL for the reconstruction of cardiac cine data with Cartesian undersampling. This is achieved with local processing of spatio-temporal 3D patches and by independent treatment of the real and imaginary parts of the dataset. The enforcement of temporal gradients is also proposed as an additional constraint that can greatly accelerate the convergence rate and improve the reconstruction for high acceleration rates. The method is compared to and shown to systematically outperform k- t FOCUSS, a successful CS method that uses a fixed basis transform.
Strong CO2 Binding in a Water-Stable, Triazolate-Bridged Metal−Organic Framework Functionalized with Ethylenediamine (2009)

Reaction of CuCl(2) x 2 H(2)O with 1,3,5-tris(1H-1,2,3-triazol-5-yl)benzene (H(3)BTTri) in DMF at 100 degrees C generates the metal-organic framework H(3)[(Cu(4)Cl)(3)(BTTri)(8)(DMF)(12)] x 7 DMF x 76 H(2)O (1-DMF). The sodalite-type structure of the framework consists of BTTri(3-)-linked [Cu(4)Cl](7+) square clusters in which each Cu(II) center has a terminal DMF ligand directed toward the interior of a large pore. The framework exhibits a high thermal stability of up to 270 degrees C, as well as exceptional chemical stability in air, boiling water, and acidic media. Following exchange of the guest solvent and bound DMF molecules for methanol to give 1-MeOH, complete desolvation of the framework at 180 degrees C generated H(3)[(Cu(4)Cl)(3)(BTTri)(8)] (1) with exposed Cu(II) sites on its surface. Following a previously reported protocol, ethylenediamine molecules were grafted onto these sites to afford 1-en, featuring terminal alkylamine groups. The N(2) adsorption isotherms indicate a reduction in the BET surface area from 1770 to 345 m(2)/g following grafting. The H(2) adsorption data at 77 K for 1 indicate a fully reversible uptake of 1.2 wt % at 1.2 bar, while the CO(2) isotherm at 195 K shows a maximal uptake of 90 wt % at 1 bar. Compared to 1, the alkylamine-functionalized framework 1-en exhibits a higher uptake of CO(2) at 298 K and pressures up to ca. 0.1 bar, as well as a higher CO(2)/N(2) selectivity at all measured pressures. Significantly, 1-en also exhibits an isosteric heat of CO(2) adsorption of 90 kJ/mol, which is much higher than the 21 kJ/mol observed for 1. This chemisorption interaction is the strongest reported to date for a metal-organic framework and points toward the potential utility of alkylamine-appended frameworks for the postcombustion capture of CO(2) from low-pressure flue gas streams.
Development of Porcine Ova That Were Centrifuged to Permit Visualization of Pronuclei and Nuclei1 (1985)

The obscured pronuclei or nuclei in living one- and two-celled pig ova were revealed after centrifugation for 3 min at 15,000 X g. To determine viability of centrifuged ova, one- and two-celled pig ova were collected from superovulated gilts; half of the ova were centrifuged and all ova were transferred into recipient gilts. Prior to transfer all embryos were stained with tetramethylrhodamine isothiocyanate (TRITC) to distinguish the experimental embryos from the recipients's own ova. Centrifuged ova were transferred into one oviduct of recipient gilts and uncentrifuged ova were deposited into the opposite oviduct. Embryos were recovered 4 days after transfer and were stained with lacmoid or Hoechst 33342 to assess their stage of development. Centrifugation had no detectable influence on survival of the recovered embryos to 4 days. Centrifugation is a simple, reliable method for revealing pronuclei and nuclei of one- and two-celled pig ova and apparently does not alter subsequent preimplantation development.
UM OUTRO OLHAR PARA A ECONOMIA (2010)

A Sociologia (SE) ganhou espaco nos meios academicos dos EUA e Europa a partir da metade da decada de 80, especialmente com o desenvolvimento da chamada Nova Sociologia (NSE). No Brasil, seguindo a reboque do desenvolvimento no exterior, a SE comeca a ganhar espaco a partir do ano 2000. Redes e Sociologia Economica contribui para sedimentar o desenvolvimento da area no pais. Por juntar em um mesmo livro textos importantes para a compreensao das bases da SE e trabalhos empiricos de pesquisadores brasileiros, ele facilita o acesso de professores e alunos, de graduacao e posgraduacao, a essa nova perspectiva sobre a acao economica.
Real-time moving obstacle detection using optical flow models (2006)

In this paper, we propose a real-time method to detect obstacles using theoretical models of optical flow fields. The idea of our approach is to segment the image in two layers: the pixels which match our optical flow model and those that do not (i.e. the obstacles). In this paper, we focus our approach on a model of the motion of the ground plane. Regions of the visual field that violate this model indicate potential obstacles. In the first part of this paper, we describe the method we used to determine our model of the ground plane's motion. Then we focus on the method to match both the model and the real optical flow field. Experiments have been carried on the Cycab mobile robot in real-time on a standard PC laptop
Engagement of CD83 ligand induces prolonged expansion of CD8+ T cells and preferential enrichment for antigen specificity (2005)

Following T-cell receptor and CD28 signaling, CD8+ T cells express a receptor for CD83, a molecule up-regulated on functionally mature dendritic cells. Although this expression pattern suggests that CD83 is involved in adaptive immunity, little is known about its function in the periphery, and the existence of its ligand on T cells is controversial. We demonstrate that the engagement of the CD83 ligand (CD83L) preferentially enriches and significantly amplifies the number of antigen-specific CD8+ T cells. Coengagement of the T-cell receptor, CD28, and CD83L supports priming of naive CD8+ T cells that retain antigen specificity and cytotoxic function for more than 6 months. Therefore, engagement of the CD83L provides a unique signal to activated CD8+ T cells that could be exploited to generate long-lived antigen-specific cytotoxic T cells for the treatment of cancer and infection.
A novel human CC chemokine PARC that is most homologous to macrophage-inflammatory protein-1 alpha/LD78 alpha and chemotactic for T lymphocytes, but not for monocytes (1997)

By searching the expressed sequence tag (EST) database, we identified partial cDNA sequences encoding a polypeptide with significant sequence identity to the human CC chemokine macrophage-inflammatory protein-1 alpha (MIP-1 alpha)/LD78 alpha. We determined the complete cDNA sequence that contained a reading frame of 89 amino acids with 61% identity to human MIP-1 alpha/LD78 alpha. The mRNA was expressed constitutively at high levels in human lung and at low levels in some lymphoid tissues. Furthermore, the mRNA was strongly induced in several human cell lines, including monocytic U937 cells, by PMA. From these results, we designated this novel CC chemokine as PARC from pulmonary and activation-regulated chemokine. In situ hybridization analyses showed that alveolar macrophages, follicular dendritic cells in the germinal centers of regional lymph nodes, and peripheral blood monocytes stimulated with LPS express PARC mRNA. Using the human CC chemokine yeast artificial chromosome contig that we constructed recently, we mapped the PARC gene (SCYA18) within one of the two subregions of the CC chemokine gene cluster at chromosome 17q11.2. To investigate its biologic activity, the PARC protein was expressed in insect cells. PARC was chemotactic for both activated (CD3+) T cells and nonactivated (CD14-) lymphocytes, but not for monocytes or granulocytes. Binding analysis using PARC fused with alkaline phosphatase-(His)6 showed the presence of a single class of receptors for PARC on lymphocytes with a Kd of 1.9 nM and 590 sites/cell. Thus, PARC is a novel CC chemokine with a close phylogenic relationship with MIP-1 alpha/LD78 alpha, but with a highly selective activity on lymphocytes.
Canine parvovirus empty capsids produced by expression in a baculovirus vector: use in analysis of viral properties and immunization of dogs (1992)

The VP-2 genes of canine parvovirus (CPV) and a recombinant consisting of CPV and feline panleukopenia virus (FPV) sequences were cloned into baculovirus expression vectors, fused to the baculovirus polyhedrin promoter. Recombinant baculoviruses were prepared and the properties of the parvovirus proteins expressed in insect cells examined. The proteins produced were the same size as the authentic CPV VP-2 protein, and were produced late after infection; the quantity of proteins recovered from the insect cell cultures was similar to those produced in CPV infections. Parvovirus particles formed had the haemagglutination (HA), sedimentation and buoyant density properties of authentic CPV capsids. Both the CPV capsids and the CPV-FPV recombinant capsids from the baculovirus system expressed the same epitopes as those seen in the viable parvoviruses when tested with a panel of anti-parvovirus monoclonal antibodies. Lysates of recombinant baculovirus-infected cells were inoculated into dogs, giving rise to serum neutralizing and HA-inhibiting antibodies, and the immunized dogs were protected from clinical disease upon challenge with a virulent isolate of the most recent antigenic type of CPV.
Peptide YY receptors in the proximal tubule PKSV-PCT cell line derived from transgenic mice. Relation with cell growth. (1993)

Receptors for peptide YY (PYY) were identified in the PKSV-PCT renal proximal tubule cell line, derived from transgenic mice (SV40 large T antigen under the control of the rat L-type pyruvate kinase 5'-regulatory sequence). Binding of [125I-Tyr36]monoiodo-PYY ([125I] PYY to cell was specific, saturable, and reversible. The order of potency for peptides for inhibiting [125I]PYY binding was: PYY > neuropeptide Y (NPY) = PYY (13-36) >> pancreatic polypeptide. A single class of receptors was observed with a Kd of 0.37 +/- 0.05 nM and a Bmax of 103 +/- 10 fmol/mg protein. After cross-linking, electrophoresis of covalent [125I]PYY-receptor complexes revealed a single band of M(r) 50,000. PYY receptors were exclusively present at the basolateral membrane surface of polarized cells and were coupled negatively to adenylylcyclase by a pertussis toxin-sensitive G protein. PKSV-PCT cell growth and T antigen expression could be modulated by D-glucose in the medium. PYY receptors were exclusively expressed in proliferative cells cultured in the presence of D-glucose. PYY receptors disappeared in the absence of D-glucose and were expressed again when proliferation was activated by reintroduction of D-glucose. PYY stimulated cell growth (17-26% increase) and promoted [methyl-3H]thymidine incorporation into DNA (64% increase; ED50 = 5 nM PYY) of cells grown in D-glucose-enriched medium. This latter effect of PYY was largely reversed by pretreatment of cells with pertussis toxin. These findings suggest that PYY receptors play a role in epithelial cell growth.
Heterogeneous phase behavior of carbon dioxide in n-hexane and n-heptane at low temperatures (1971)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTHeterogeneous phase behavior of carbon dioxide in n-hexane and n-heptane at low temperaturesUn K. Im and Fred. KurataCite this: J. Chem. Eng. Data 1971, 16, 4, 412–415Publication Date (Print):October 1, 1971Publication History Published online1 May 2002Published inissue 1 October 1971https://pubs.acs.org/doi/10.1021/je60051a011https://doi.org/10.1021/je60051a011research-articleACS PublicationsRequest reuse permissionsArticle Views212Altmetric-Citations23LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Users guide to the PGAPack parallel genetic algorithm library (1996)

PGAPack is a parallel genetic algorithm library that is intended to provide most capabilities desired in a genetic algorithm package, in an integrated, seamless, and portable manner. Key features of PGAPack are as follows: Ability to be called from Fortran or C. Executable on uniprocessors, multiprocessors, multicomputers, and workstation networks. Binary-, integer-, real-, and character-valued native data types. Object-oriented data structure neutral design. Parameterized population replacement. Multiple choices for selection, crossover, and mutation operators. Easy integration of hill-climbing heuristics. Easy-to-use interface for novice and application users. Multiple levels of access for expert users. Full extensibility to support custom operators and new data types. Extensive debugging facilities. Large set of example problems.
Porphyrin Binding to Quadruplexed T4G4 (1998)

We have recently reported the cation-induced self-assembly of DNA oligomers of the general sequence C4T4G4T1-4G4 into high-molecular weight multistranded structures [Marotta, S.P., Tamburri, P.A., and Sheardy, R.D. (1996) Biochemistry 35, 10484-10492]. The architecture of the proposed structure consists of a series of four leafed G4 tetrads tethered together via one or two T1-4 strands and thus resembles a long four-sided hollow tube with periodic "pockets". These pockets possess electrostatic, hydrogen bonding, and hydrophobic contact points and should be ideal candidates for the binding of small molecules. To assess the potential of using porphyrins as probes for these structures, we have investigated the interaction of tetrakis(4-N-methylpyridyl)porphine (H2TMPyP) with the simple quadruplex formed by T4G4 and with the duplex formed by CGCGATATCGCG. Visible absorption, circular dichroism, and fluorescent energy transfer studies indicate that H2TMPyP binds to both the duplex and quadruplex via intercalation at low [porphyrin]/[DNA molecule] ratios, i.e., in the presence of excess potential DNA binding sites. Analyses of Scatchard plots show that H2TMpyP binds with high affinity to both DNA secondary structures but binds to the quadruplex with an affinity 2 times greater than that of the duplex.
Enhanced resistance to Cryptococcus neoformans infection induced by chloroquine in a murine model of meningoencephalitis (1997)

Although the pathogenesis of cerebral cryptococcosis is poorly understood, local immune cells, such as microglia and astrocytes, likely play a critical role in containing infection. Chloroquine (CQ) is a weak base that accumulates within acidic vacuoles and increases their pH. Consequently, proteolytic activity of lysosomal enzymes and intracellular iron release/availability are impaired, resulting in decreased availability of nutrients crucial to microorganism survival and growth in the host. We found that CQ enhances BV2 microglial-cell-mediated anticryptococcal activity in vitro. The phenomenon is (i) evident when both unopsonized and opsonized microorganisms are used and (ii) mimicked by NH4Cl, another weak base, and by bafilomycin A1, an inhibitor of vacuolar-type H+-ATPases. In vivo, intracerebral administration of CQ before lethal local challenge with Cryptococcus neoformans results in a significant augmentation of median survival time and a marked reduction of yeast growth in the brain and is associated with the enhancement of local interleukin 1beta (IL-1beta) and IL-6 mRNA transcripts. Overall, these results provide the first evidence that CQ enhances anticryptococcal host defenses.
Colouring matters of Australian plants. XXII. Ventilagone: crystal structure and an approach to synthesis (1980)

The crystal structure of the title compound, a naturally occurring tricyclic quinone, C16H16O5, has been found to be (1R*,3S*)-7,10- dihydroxy-1,3,8-trimethyl-3,4,6,9-tetrahydro-1H-naphtho[2,3-c]-pyran- 6,9-dione by single-crystal X-ray diffraction methods at 295(1) K and refined by least squares to a residual of 0.033 for 1143 'observed' reflections. Crystals are monoclinic, P21, a 8.346(8), b 16.79(2), c 4.911(5)?, ß 101.17(8)°, Z 2. The molecule is shown to have the cis configuration. As an approach to the synthesis of the pigment the model compound 5-chloro-8-methoxy-1,3-dimethylisochroman has been prepared and the two racemic forms have been separated and characterized.
Total iridectomy in the primate in vivo: surgical technique and postoperative anatomy. (1975)

A simple, brief surgical procedure for in vivo removal of the entire primate iris is described. A small peripheral corneal incision is made, and the prolapsed iris is torn from its insertion by forceps, without intraocular instrumentation. The eye recovers quickly and, except for the aniridia, the clinical and histologic appearance of the anterior segment is essentially normal. Experimental uses for the aniridic monkey eye are noted.
Fringe-free, background-free, collinear third-harmonic generation frequency-resolved optical gating measurements for multiphoton microscopy (2006)

A background-free, fringe-free form of frequency-resolved optical gating using the third-harmonic signal generated from a glass coverslip is used to characterize 100 fs pulses at the focus of a 0.65 NA objective.
The effect of gasoline aromatics content on exhaust emissions (1990)

A cooperative vehicle exhaust emissions test program was conducted by the California Air Resources Board and Chevron Research and Technology Company. The focus of the program was to determine the effect of aromatics content on nitrogen oxides (NO{sub x}) emissions. The program consisted of testing nine vehicles of three different fuels. The fuels ranged in aromatics content from 10% to 30%. Other fuel properties were held as constant as possible. The tests were conducted in two different laboratories. In addition to the measurement of criteria emissions (hydrocarbons, carbon monoxide, and NO{sub x}), some of the hydrocarbon emissions were speciated and a reactivity of the exhaust was calculated. Only slight changes in the exhaust emissions and reactivity were observed for a change in aromatics content from 30% to 10%.
XMLTable Index - An Efficient Way of Indexing and Querying XML Property Data (2007)

Efficiently storing and querying XML has been widely studied in research and industrial settings. Major RDBMS vendors now support XML as a native datatype in their systems and provide physical means of storing schema agnostic XML data. Typically this data is stored in CLOBs, BLOBs, or tree forms, with path or value indices used to efficiently process XQuery and SQL queries. However, in many use case queries derived from industrial XML applications, we find that it is very common to query XML based on a group of related property data and to query on the master-detail relationships using the SQL XMLTable construct. We propose an indexing mechanism called the XMLTable Index which is more efficient than the path and value index approach for this class of queries, and provides a way to efficiently process these queries over any physical XML storage form. The XMLTable Index complements the path/value index approach, and can be enhanced in its capabilities by using it in conjunction with path, value, text and other domain indices.
Chimeric Hemagglutinin Constructs Induce Broad Protection against Influenza B Virus Challenge in the Mouse Model (2017)

Seasonal influenza virus epidemics represent a significant public health burden. Approximately 25% of all influenza virus infections are caused by type B viruses, and these infections can be severe, especially in children. Current influenza virus vaccines are an effective prophylaxis against infection but are impacted by rapid antigenic drift, which can lead to mismatches between vaccine strains and circulating strains. Here, we describe a broadly protective vaccine candidate based on chimeric hemagglutinins, consisting of globular head domains from exotic influenza A viruses and stalk domains from influenza B viruses. Sequential vaccination with these constructs in mice leads to the induction of broadly reactive antibodies that bind to the conserved stalk domain of influenza B virus hemagglutinin. Vaccinated mice are protected from lethal challenge with diverse influenza B viruses. Results from serum transfer experiments and antibody-dependent cell-mediated cytotoxicity (ADCC) assays indicate that this protection is antibody mediated and based on Fc effector functions. The present data suggest that chimeric hemagglutinin-based vaccination is a viable strategy to broadly protect against influenza B virus infection.<b>IMPORTANCE</b> While current influenza virus vaccines are effective, they are affected by mismatches between vaccine strains and circulating strains. Furthermore, the antiviral drug oseltamivir is less effective for treating influenza B virus infections than for treating influenza A virus infections. A vaccine that induces broad and long-lasting protection against influenza B viruses is therefore urgently needed.
Fused protein domains inhibit DNA binding by LexA. (1992)

Many studies of transcription activation employ fusions of activation domains to DNA binding domains derived from the bacterial repressor LexA and the yeast activator GAL4. Such studies often implicitly assume that DNA binding by the chimeric proteins is equivalent to that of the protein donating the DNA binding moiety. To directly investigate this issue, we compared operator binding by a series of LexA-derivative proteins to operator binding by native LexA, by using both in vivo and in vitro assays. We show that operator binding by many proteins such as LexA-Myc, LexA-Fos, and LexA-Bicoid is severely impaired, while binding of other LexA-derivative proteins, such as those that carry bacterially encoded acidic sequences ("acid blobs"), is not. Our results also show that DNA binding by LexA derivatives that contain the LexA carboxy-terminal dimerization domain (amino acids 88 to 202) is considerably stronger than binding by fusions that lack it and that heterologous dimerization motifs cannot substitute for the LexA88-202 function. These results suggest the need to reevaluate some previous studies of activation that employed LexA derivatives and modifications to recent experimental approaches that use LexA and GAL4 derivatives to detect and study protein-protein interactions.