gebhart/patrepeval huggingface dataset:
Advances in Nanostructured Carbons from Block Copolymers Prepared by Controlled Radical Polymerization Techniques (2006)

This chapter summarizes recent progress toward the preparation of nanostructured carbons from well-defined polyacrylonitrile (PAN) copolymers synthesized by controlled/living radical polymerization, particularly atom transfer radical polymerization (ATRP). Nanoscale PAN domains are formed via self-assembly driven by phase separation between PAN and a sacrificial block. PAN domains are then converted into carbon nanostructures by pyrolysis. This approach allows us to prepare thin film and bulk nanostructured carbon with different morphologies and considerable porosities. Control of the long range order in these materials was achieved through a directional casting technique, i.e., zone casting. Routes were developed to prepare highly porous silica and carbon via supramolecular templating using a water soluble PAN block copolymer and by grafting PAN from the surface of the porous silica template.
Systemic administration of epothilone B promotes axon regeneration after spinal cord injury (2015)

After central nervous system (CNS) injury, inhibitory factors in the lesion scar and poor axon growth potential prevent axon regeneration. Microtubule stabilization reduces scarring and promotes axon growth. However, the cellular mechanisms of this dual effect remain unclear. Here, delayed systemic administration of a blood-brain barrier-permeable microtubule-stabilizing drug, epothilone B (epoB), decreased scarring after rodent spinal cord injury (SCI) by abrogating polarization and directed migration of scar-forming fibroblasts. Conversely, epothilone B reactivated neuronal polarization by inducing concerted microtubule polymerization into the axon tip, which propelled axon growth through an inhibitory environment. Together, these drug-elicited effects promoted axon regeneration and improved motor function after SCI. With recent clinical approval, epothilones hold promise for clinical use after CNS injury.
Length-Sorted, Large-Diameter, Polyfluorene-Wrapped Semiconducting Single-Walled Carbon Nanotubes for High-Density, Short-Channel Transistors (2016)

Samples of highly enriched semiconducting SWCNTs with average diameters of 1.35 nm have been prepared by combining PODOF polymer wrapping with size-exclusion chromatography. The purity of the material was determined to be >99.7% from the transfer characteristics of short-channel transistors comprising densely aligned sc-SWCNTs. The transistors have a hole mobility of up to 297 cm(2)V(-1) s(-1) and an On/Off ratio as high as 2 × 10(8).
Double‐blind cross‐over trial of oral sodium cromoglycate in patients with irritable bowel syndrome due to food intolerance (1991)

Twenty patients with irritable bowel syndrome due to food intolerance were randomized to either oral sodium cromoglycate or placebo in a double-blind cross-over trial. The study consisted of treatment with either sodium cromoglycate or placebo for 8 weeks, followed by the cross-over treatment for 8 further weeks. Patients were allowed to eat the offending foods during the study. Eighteen patients completed the study. Analysis of patients' diary card scores showed a statistically significant difference in favour of sodium cromoglycate. There was a long carry-over effect in the active-placebo order group. Therefore oral sodium cromoglycate seems to be a useful treatment in patients with irritable bowel syndrome and proven food intolerance.
Comprehensive whole genome array CGH profiling of mantle cell lymphoma model genomes (2004)

Mantle cell lymphoma (MCL) is an aggressive non-Hodgkin's lymphoma with median patient survival times of approximately 3 years. Although the characteristic t(11;14)(q13;q32) is found in virtually all cases, experimental evidence suggests that this event alone is insufficient to result in lymphoma and secondary genomic alterations are required. Using a newly developed DNA microarray of 32 433 overlapping genomic segments spanning the entire human genome, we can for the first time move beyond marker based analysis and comprehensively search for secondary genomic alterations concomitant with the t(11;14) in eight commonly used cell models of MCL (Granta-519, HBL-2, NCEB-1, Rec-1, SP49, UPN-1, Z138C and JVM-2). Examining these genomes at tiling resolution identified an unexpected average of 35 genetic alterations per cell line, with equal numbers of amplifications and deletions. Recurrent high-level amplifications were identified at 18q21 containing BCL2, and at 13q31 containing GPC5. In addition, a recurrent homozygous deletion was identified at 9p21 containing p15 and p16. Alignment of these profiles revealed 14 recurrent losses and 21 recurrent gains as small as 130 kb. Remarkably, even the intra immunoglobulin gene deletions at 2p11 and 22q11 were detected, demonstrating the power of combining the detection sensitivity of array comparative genomic hybridization (CGH) with the resolution of an overlapping whole genome tiling-set. These alterations not only coincided with previously described aberrations in MCL, but also defined 13 novel regions. Further characterization of such minimally altered genomic regions identified using whole genome array CGH will define novel dominant oncogenes and tumor suppressor genes that play important roles in the pathogenesis of MCL.
Polyelectrolyte Complex Nanoparticles of Poly(ethyleneimine) and Poly(acrylic acid): Preparation and Applications (2011)

In this contribution we outline polyelectrolyte (PEL) complex (PEC) nanoparticles, prepared by mixing solutions of the low cost PEL components poly(ethyleneimine) (PEI) and poly(acrylic acid) (PAC). It was found, that the size and internal structure of PEI/PAC particles can be regulated by process, media and structural parameters. Especially, mixing order, mixing ratio, PEL concentration, pH and molecular weight, were found to be sensible parameters to regulate the size (diameter) of spherical PEI/PAC nanoparticles, in the range between 80–1,000 nm, in a defined way. Finally, applications of dispersed PEI/PAC particles as additives for the paper making process, as well as for drug delivery, are outlined. PEI/PAC nanoparticles mixed directly on model cellulose film showed a higher adsorption level applying the mixing order 1. PAC 2. PEI compared to 1. PEI 2. PAC. Surface bound PEI/PAC nanoparticles were found to release a model drug compound and to stay immobilized due to the contact with the aqueous release medium.
Proteomic analysis of stratum corneum in Cutaneous T‐Cell Lymphomas and psoriasis (2019)

Stratum corneum collected by tape stripping from 10 and 24 subjects with cutaneous T-cell lymphomas (CTCL) or psoriasis, respectively, were compared using quantitative label-free mass spectrometry analysis. A non-supervised statistical analysis (Posneg NMF) based on 352 differentially expressed proteins in both CTCL and psoriasis samples was able to separate the two disease groups and finally able to identify a set of 112 proteins that contributed most and significantly to the separation when compared to non-lesional samples. In addition, Luminex assay revealed that the increase in the amount of chemokines related to the inflammatory response, and immune cell infiltration and recruitment in lesional stratum corneum in CTCL, including CXCL8, CXCL9, CXCL10, CCL27, TNF and sICAM-1 was in agreement with published data on entire skin biopsies. Proteome analysis using quantitative methods including mass spectrometry and Luminex technology offered the possibility to investigate the relevant protein signature in CTCL and may be helpful to diagnose and investigate the efficacy of treatments in clinical investigations using non-invasive methods in future.
A Pregnancy-Prevention Program in Women of Childbearing Age Receiving Isotretinoin (1995)

The pregnancy rate among women receiving isotretinoin therapy was substantially lower than that in the general population and was compatible with the characteristics and behavior of the enrolled women.
The Many Roles for Fluorine in Medicinal Chemistry (2008)

ADVERTISEMENT RETURN TO ISSUEPerspectiveNEXTThe Many Roles for Fluorine in Medicinal ChemistryWilliam K. Hagmann†View Author Information Merck Research Laboratories, Rahway, New Jersey 07065† Contact information: phone, 732-594-7249; fax, 732-594-5966; e-mail, [email protected]Cite this: J. Med. Chem. 2008, 51, 15, 4359–4369Publication Date (Web):June 21, 2008Publication History Received29 February 2008Published online21 June 2008Published inissue 1 August 2008https://pubs.acs.org/doi/10.1021/jm800219fhttps://doi.org/10.1021/jm800219freview-articleACS PublicationsCopyright © 2008 American Chemical SocietyRequest reuse permissionsArticle Views33030Altmetric-Citations2988LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose SUBJECTS:Amides,Fluorine,Inhibitors,Plasma,Trifluoromethyl Get e-Alerts
Abstract 164: High throughput homogenous bioluminescent assays for monitoring the concentrations of AMP, ADP and ATP (2012)

Abstract Adenine nucleotides are major determinants of the energy status of the cell and thus any modulation of their cellular concentration has significant consequences to cellular metabolism, cellular growth and cell death. ATP generating enzymes are usually involved in anabolic processes while ATP consuming enzymes are involved in catabolite processes. We have developed biochemical assays that monitor the concentrations of ATP, ADP and AMP in a biochemical reaction. For instance ATP depletion dependent assays and ADP generating assays monitor the activity of kinases and ATPases. These universal assays can measure the activity of various enzymes with no modification of the native substrate and the ability to use diverse substrates such as proteins, peptides, lipids, sugars, etc. The AMP generating reactions such as ubiquitin ligases, aa aminoacyl t-RNA synthetases, DNA ligases, cAMP-dependent phosphodiesterases, etc. can be also monitored with high sensitivity and reproducibility. We will show data using these various technologies in monitoring the various adenine nucleotide concentrations in biochemical reactions. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 164. doi:1538-7445.AM2012-164
Cholesterol is required for infection by Semliki Forest virus. (1991)

Semliki Forest virus (SFV) and many other enveloped animal viruses enter cells by a membrane fusion reaction triggered by the low pH within the endocytic pathway. In vitro, SFV fusion requires cholesterol in the target membrane, but the role of cholesterol in vivo is unknown. In this paper, the infection pathway of SFV was studied in mammalian and inset cells substantially depleted of sterol. Cholesterol-depleted cells were unaltered in their ability to bind, internalize, and acidify virus, but were blocked in SFV fusion and subsequent virus replication. Depleted cells could be infected by the cholesterol-independent vesicular stomatitis virus, which also enters cells via endocytosis and low pH-mediated fusion. The block in SFV infection was specifically reversed by cholesterol but not by cholestenone, which lacks the critical 3 beta-hydroxyl group. Cholesterol thus is central in the infection pathway of SFV, and may act in vivo to modulate infection by SFV and other pathogens.
Automatic Parallelization Based on Multi-Dimensional Scheduling (1994)

In the scope of uniform recurrence equations, we study an algorithm first proposed by Karp, Miller and Winograd for detecting cycles of null weight in cyclic graphs. We show how this algorithm can be used for generating multi-dimensional schedules that express all the potential parallelism contained in a computable system of uniform recurrence equations. We then apply this technique to imperative programs based on loop nests and whose dependences are described in the framework (Z; +; \\Gamma; ), the most popular way of describing dependences. We are able to show that our technique is an optimal parallelization technique in the sense that no more parallelism can be detected than provided by our new algorithm.
An Evaluation of New Aspaltene Inhibitors; Laboratory Study and Field Testing (1995)

Abstract Three candidate asphaltene inhibitors have been laboratory tested for their effectiveness on a Canadian crude. One inhibitor, an oil-soluble polymeric dispersant developed by Shell Chemicals, showed superior behaviour compared to the others: flocculation titrations with n-heptane resulted in an optimum concentration of 1300 ppm. PVT calculations, however, indicated that the prevailing conditions downhole can be quite favourable with respect to the amount of effective inhibitor compared to the atmospheric laboratory titrations which appear to be quite severe tests. Therefore, lower initial concentrations were recommended for a field trial. The chemical could be continuously injected through a capillary string, thereby avoiding the lost oil production associated with solvent cleaning operations. It has proved to be very effective at concentrations as low as 66 ppm, resulting in both a technically and an economically successful trial. Introduction Precipitation of asphaltenes in reservoirs, wells and facilities has a severe detrimental impact on the economics of oil production because of a reduction well productivity and/or clogging of the production facilities. The nature and behaviour of asphaltenes in crude oils is complex. Asphaltenes are heterocyclic macromolecules mainly consisting of carbon and hydrogen and minor components such as sulphur, nitrogen, and oxygen. It is generally accepted that resins and maltenes (these structures are comparable to asphaltenes but with a much lower molecular weight) are responsible for keeping the asphaltene particles in dispersion. The asphaltenes are surrounded by the polar head groups of the resins and maltenes while the nonpolar alkyl tails interact with the oil phase. So, crudes with a high ratio of resins to asphaltenes are less subject to asphaltene deposition whereas crudes with large amounts of non-polar saturates compared to aromatics are more prone to exhibit asphaltene precipitation problems. At "normal" reservoir conditions the asphaltenes, resins, maltenes and oil phase are in thermodynamic equilibrium. This equilibrium can be disturbed by a number of factors: decline of the reservoir pressure towards the bubble point, change in temperature or addition of a miscible solvent to the oil as applied in various EOR techniques. Much research has been focused on modelling the deposition behaviour of asphaltenes in reservoir crudes upon changes in pressure, temperature or composition. These models are based on the Flory-Huggins theory for colloidal systems and calculate the chemical potential for large molecules in the various phases. They require solubility parameters as input. In addition, the industry has made a substantial effort to develop pragmatic solutions to the problem of asphaltene deposition in producing wells.
The Efficacy of JMS Stylet-Oil on Grape Powdery Mildew and Botrytis Bunch Rot and Effects on Fermentation (1998)

The use of JMS Stylet-Oil as a control for powdery mildew and bunch rot of grapes was investigated under California vineyard conditions. Stylet-Oil at 2% (v/v) was compared in commercial vineyards with commonly used fungicides including fenarimol, myclobutanil, triflumizole, and sulfur for powdery mildew control, or iprodione for bunch rot control. Stylet-Oil gave control of powdery mildew comparable to the demethylation inhibitor fungicides. Botrytis bunch rot was significantly reduced with Stylet-Oil alone, and when Stylet-Oil was mixed with iprodione a further reduction in bunch rot occurred. Grape juice fermentation as measured by yeast growth and sugar consumption was not affected by Stylet-Oil concentrations that ranged from 0 to 3.6 mL/L.
Clinical experience with biliopancreatic bypass and gastrectomy or selective vagotomy for morbid obesity. (1986)

In 1980 Scopinaro described biliopancreatic bypass for the treatment of obesity. This procedure was aimed at selective malabsorption. The authors used Scopinaro's procedure in 33 patients, but in 17 they modified it by doing selective vagotomy with closure of the duodenum in continuity instead of a subtotal gastrectomy. Eighteen months after the operation, 88% of the patients had what the authors considered was a good to excellent result, that is a loss of more than 25% of the patient's initial weight. Morbidity of many kinds was encountered but most was self-limiting or easily corrected by medical means. From their experience the authors conclude that biliopancreatic bypass as a procedure for the treatment of morbid obesity should continue to be performed and evaluated.
Effect of cigarette smoking on human PDL fibroblasts attachment to periodontally involved root surfaces in vitro (2002)

The present results suggest that cigarette smoking compromises PDL cell adhesion to root planed surfaces, which might affect periodontal regeneration following therapy.
Cloning and molecular analysis of the HAP2 locus: a global regulator of respiratory genes in Saccharomyces cerevisiae. (1985)

We report here the cloning of the HAP2 gene, a locus required for the expression of many cytochromes and respiratory functions in Saccharomyces cerevisiae. The cloned sequences were found to direct integration of a marked vector to the chromosomal HAP2 locus, and derivatives of these sequences were shown to yield chromosomal disruptions with a Hap2- phenotype. The gene maps 18 centimorgans centromere proximal to ade5 on the left arm of chromosome VII, distinguishing it from any other previously characterized nuclear petite locus. The HAP2 locus encodes a 1.3-kilobase transcript which is present at extremely low levels and which is derepressed in cells grown in media containing nonfermentable carbon sources. Levels of HAP2 mRNA are not reduced in strains bearing a mutation at the HAP3 locus, which is also required for expression of respiratory functions. Models outlining possible interactions of the products of the HAP2 and HAP3 genes are presented.
Efficient IgG-mediated suppression of primary antibody responses in Fcγ receptor-deficient mice (1999)

IgG antibodies can suppress more than 99% of the antibody response against the antigen to which they bind. This is used clinically to prevent rhesus-negative (Rh-) women from becoming immunized against Rh+ erythrocytes from their fetuses. The suppressive mechanism is poorly understood, but it has been proposed that IgG/erythrocyte complexes bind to the inhibitory Fc receptor for IgG (FcgammaRIIB) on the B cell surface, thereby triggering negative signals that turn off the B cell. We show that IgG induces the same degree of suppression of the response to sheep erythrocytes in animals lacking the known IgG-binding receptors FcgammaRIIB, FcgammaRI + III, FcgammaRI + IIB + III, and FcRn (the neonatal Fc receptor) as in wild-type animals. Reinvestigation of the ability of F(ab')2 fragments to suppress antibody responses demonstrated that they were nearly as efficient as intact IgG. In addition, monoclonal IgE also was shown to be suppressive. These findings suggest that IgG inhibits antibody responses through Fc-independent mechanisms, most likely by masking of antigenic epitopes, thereby preventing B cells from binding and responding to antigen. In agreement with this, we show that T cell priming is not abolished by passively administered IgG. The results have implications for the understanding of in vivo regulation of antibody responses and Rh prophylaxis.
Aβ(1–40) Prevents Heparanase-catalyzed Degradation of Heparan Sulfate Glycosaminoglycans and Proteoglycans in Vitro (1997)

Alzheimer's disease is characterized by senile plaques composed of polymeric fibrils of beta amyloid (Abeta), a 39-42-amino acid peptide formed after proteolytic processing of the amyloid precursor protein (betaAPP). Heparan sulfate proteoglycans have been shown to colocalize with Abeta in Alzheimer's disease brain, and experimental evidence indicates that the interactions between the proteoglycan and the peptide are important for the promotion, deposition, and/or persistence of the senile plaques. Studies in rat brain indicated that both the core protein and the heparan sulfate glycosaminoglycan chains are required for amyloid fiber formation and deposition in vivo (Snow, A. D., Sekiguchi, R., Nochlin, D., Fraser, P., Kimata, K. , Mizutani, A., Arai, M., Schreier, W. A., and Morgan, D. G. (1994) Neuron 12, 219-234), suggesting that one mechanism to prevent the formation of Abeta-heparan sulfate proteoglycan complexes that lead to deposition of amyloid would be to degrade the proteoglycan. Normally, heparan sulfate proteoglycans are internalized and degraded to short glycosaminoglycans by intracellular heparanases. These reactions occur in the endosomal-lysosomal pathway, which is the same intracellular location where betaAPP is processed to Abeta. Using partially purified heparanase activities from Chinese hamster ovary cells we examined whether Abeta(1-40) affects the catabolism of Chinese hamster ovary heparan sulfate glycosaminoglycans and proteoglycans in vitro. Abeta(1-40) binds to both the long heparan sulfate glycosaminoglycans attached to core proteins and the short, heparanase-derived chains in a concentration-dependent and pH-dependent manner. When Abeta(1-40) is added to heparanase assays, it prevents the partially purified activities from releasing heparan sulfate chains from core proteins and degrading them to short glycosaminoglycans; however, a large molar excess of the peptide to heparan sulfate is required to see the effect. Our results suggest that normally the levels of Abeta in the endosomal pathway are not sufficient to interfere with heparanase activity in vivo. However, once the level of Abeta-peptides are elevated, as they are in Alzheimer's disease, they could interact with heparan sulfate proteoglycans and prevent their catabolism. This could promote the formation and deposition of amyloid, since the binding of Abeta to the proteoglycan species will predominate.
Bose-Einstein Condensation and Strong-Correlation Behavior of Phonons in Ion Traps (2004)

We show that the dynamics of phonons in a set of trapped ions interacting with lasers is described by a Bose-Hubbard model whose parameters can be externally adjusted. We investigate the possibility of observing several quantum many-body phenomena, including Bose-Einstein condensation as well as a superfluid-Mott insulator quantum phase transition.