gebhart/patrepeval huggingface dataset:
Seismic sensing of extremely-low-frequency sounds in coastal waters (2005)

A very compact, but quite lightweight digital, triaxial ocean-bottom seismometer has been developed to study ELF-acoustics (1 to 100 Hz) in shallow water by mounting three active, non orientation-privileged 1-Hz geophones in a flat container together with a compass, two tilt-meters, a thermistor, and the pertinent A/D electronics. Each geo-acoustic channel is sampled at 600 Hz and the floating-point conversion is performed with 12 + 2 bits, giving the large dynamic range of 120 dB needed to cope simultaneously with ambient noise and signals from nearby cw or explosive sources. The signals are then transmitted by a radio buoy to the shipboard acquisition and pre-processing systems. These sensor stations have been deployed to investigate infrasound propagation in coastal waters. Signals from small charges and LF-sources are analyzed, together with records of the noise background.
An investigation of augmenting speaker representations to improve speaker normalisation for DNN-based speech recognition (2015)

The conventional short-term interval features used by the Deep Neural Networks (DNNs) lack the ability to learn longer term information. This poses a challenge for training a speaker-independent (SI) DNN since the short-term features do not provide sufficient information for the DNN to estimate the real robust factors of speaker-level variations. The key to this problem is to obtain a sufficiently robust and informative speaker representation. This paper compares several speaker representations. Firstly, a DNN speaker classifier is used to extract the bottleneck features as the speaker representation, called the Bottleneck Speaker Vector (BSV). To further improve the robustness of this representation, a first-order Bottleneck Speaker Super Vector (BSSV) is also proposed, where the BSV is expanded into a super vector space by incorporating the phoneme posterior probabilities. Finally, a more fine-grain speaker representation based on the FMLLR-shifted features is examined. The experimental results on the WSJ0 and WSJ1 datasets show that the proposed speaker representations are useful in normalising the speaker effects for robust DNN-based automatic speech recognition. The best performance is achieved by augmenting both the BSSV and the FMLLR-shifted representations, yielding 10.0% - 15.3% relatively performance gains over the SI DNN baseline.
Characterization of silicon surface preparation processes for advanced gate dielectrics (1999)

This paper gives a short overview of issues associated with the surface preparation of silicon surfaces for advanced gate dielectrics and the appearance and nature of the wafer surface after different chemical treatments. The main portion of the paper demonstrates the use of electrochemical open-circuit potential (OCP) measurements as a simple and powerful technique to investigate and characterize wet silicon surface-preparation processes. This technique provides unique information about the evolution of semiconductor surface reactions in wet- chemical environments and permits the investigation of the kinetics of oxidation and etching processes in situ and in real time. Very good agreement between results obtained by this technique and results from multiple internal reflection-Fourier transform infrared spectroscopy (MIR-FTIR), X-ray photoelectron spectroscopy (XPS), spectroscopic ellipsometry (SE), and contact-angle studies is presented in this paper. A model is also presented which permits the correlation of the measured open circuit potential difference to the thickness of a growing native oxide. The etching behavior of an ultrathin thermally grown silicon oxide layer in hydrofluoric acid (HF) is discussed as a new result obtained using the OCP technique.
IGF-1–Overexpressing Mesenchymal Stem Cells Accelerate Bone Marrow Stem Cell Mobilization via Paracrine Activation of SDF-1α/CXCR4 Signaling to Promote Myocardial Repair (2008)

We hypothesized that mesenchymal stem cells (MSCs) overexpressing insulin-like growth factor (IGF)-1 showed improved survival and engraftment in the infarcted heart and promoted stem cell recruitment through paracrine release of stromal cell-derived factor (SDF)-1alpha. Rat bone marrow-derived MSCs were used as nontransduced ((Norm)MSCs) or transduced with adenoviral-null vector ((Null)MSCs) or vector encoding for IGF-1 ((IGF-1)MSCs). (IGF-1)MSCs secreted higher IGF-1 until 12 days of observation (P<0.001 versus (Null)MSCs). Molecular studies revealed activation of phosphoinositide 3-kinase, Akt, and Bcl.xL and inhibition of glycogen synthase kinase 3beta besides release of SDF-1alpha in parallel with IGF-1 expression in (IGF-1)MSCs. For in vivo studies, 70 muL of DMEM without cells (group 1) or containing 1.5x10(6) (Null)MSCs (group 2) or (IGF-1)MSCs (group 3) were implanted intramyocardially in a female rat model of permanent coronary artery occlusion. One week later, immunoblot on rat heart tissue (n=4 per group) showed elevated myocardial IGF-1 and phospho-Akt in group 3 and higher survival of (IGF-1)MSCs (P<0.06 versus (Null)MSCs) (n=6 per group). SDF-1alpha was increased in group 3 animal hearts (20-fold versus group 2), with massive mobilization and homing of ckit(+), MDR1(+), CD31(+), and CD34(+) cells into the infarcted heart. Infarction size was significantly reduced in cell transplanted groups compared with the control. Confocal imaging after immunostaining for myosin heavy chain, actinin, connexin-43, and von Willebrand factor VIII showed extensive angiomyogenesis in the infarcted heart. Indices of left ventricular function, including ejection fraction and fractional shortening, were improved in group 3 as compared with group 1 (P<0.05). In conclusion, the strategy of IGF-1 transgene expression induced massive stem cell mobilization via SDF-1alpha signaling and culminated in extensive angiomyogenesis in the infarcted heart.
Rapid and Selective Enzymatic Debridement of Porcine Comb Burns With Bromelain-Derived Debrase®: Acute-Phase Preservation of Noninjured Tissue and Zone of Stasis (2010)

Deep burns are associated with the formation of an eschar, which delays healing and increases the risk of infection. Surgical debridement of the eschar is, at present, the fastest means to achieve an eschar-free bed, but the process can not differentiate between the viable tissue and the eschar and follow the minute irregularities of the interface between the two. We evaluated the efficacy and selectivity of a novel enzymatic bromelain-based debriding agent, Debrase Gel Dressing (Debrase), in a porcine comb burn model. We hypothesized that Debrase would result in rapid debridement of the eschar without adverse effects on the surrounding uninjured skin. This is a prospective, controlled, animal experiment. Five domestic pigs (20-25 kg) were used in this study. Sixteen burns were created on each animal's dorsum using a brass comb with four rectangular prongs preheated in boiling water and applied for 30 seconds, resulting in four rectangular 10 x 20 mm full-thickness burns and separated by three 5 x 20 mm unburned interspaces representing the zone of stasis. The burned keratin layer (blisters) was removed, and the burns were treated with a single, topical, Debrase or control vehicle application for 4 hours. The Debrase/control was then wiped off using a metal forceps handle, and the burns were treated with a topical silver sulfadiazine (SSD). The wounds were observed, and full-thickness biopsies were obtained at 4 and 48 hours for evidence of dermal thickness, vascular thrombosis, and burn depth, both within the comb burns and the unburned interspaces in between them. Chi-square and t tests are used for data analysis. A single 4-hour topical application of Debrase resulted in rapid and complete eschar dissolution of all the burns in which the keratin layer was removed. The remaining dermis was thinner (1.1 +/- 0.7 mm) than in the control burns (2.1 +/- 0.3 mm; difference 0.9 mm [95% confidence interval: 0.3-1.4]) and was viable with no injury to the normal surrounding skin or to the unburned interspaces between the burns, which represents the zone of stasis. In control burns, the entire thickness of the dermis was necrotic. At 48 hours, Debrase-treated areas were found partially desiccated under SSD treatment. The unburned interspaces demonstrated partial-thickness necrosis in two third and full-thickness necrosis in one third of wounds. In contrast, full-thickness necrosis was noted in all control interspaces (P = .05). In a porcine comb burn model, a single, 4-hour topical application of Debrase resulted in rapid removal of the necrotic layer of the dermis with preservation of unburned tissues. At 48 hours, SSD treatment resulted in superficial tissue damage and partial preservation of the unburned interspaces.
Bone Metastases from Prostate Cancer: Assessing Treatment Response by Using Diffusion-weighted Imaging and Functional Diffusion Maps—Initial Observations (2010)

DW MR imaging allows monitoring of antiandrogen therapy in bone metastases. PSA level decrease corresponded well with an increase in mean tumor ADC. Heterogeneity of tumor response to therapy was demonstrated by functional DM analysis.
Probiotic factors partially improve parameters of 5-fluorouracil-induced intestinal mucositis in rats (2011)

Certain live bacteria have demonstrated preliminary indications of efficacy for the treatment of chemotherapy-induced intestinal mucositis. However, probiotic derived supernatants (SN) have yet to be investigated in the mucositis setting. We evaluated SN from Escherichia coli Nissle 1917 (EcN) and Lactobacillus fermentum BR11 (BR11) for their capacity to decrease 5-Fluorouracil (5-FU)-induced damage in vivo. Female Dark Agouti rats were gavaged with 1 mL of either SN or vehicle daily (days 0-8) and intraperitoneally injected with 5-FU (150 mg/kg) on day 5 to induce mucositis. On day 9, animals were culled and intestinal tissues collected. Significantly lower histological damage scores were apparent in the jejunum of 5-FU treated rats receiving SN compared to 5-FU controls. Myeloperoxidase levels in the jejunum of 5-FU treated rats were increased in vehicle and BR11 SN treatments compared to untreated controls, whereas no significant increase was observed after EcN SN treatment. 5-FU treatment significantly reduced villus height and crypt depth in the jejunum compared to normal controls; however no significant reduction in these parameters was observed in 5-FU treated rats receiving either SN. We conclude that bacterial SN, especially EcN, partially protect the intestine from 5-FU mucositis. Further studies are required to define specific mechanisms by which SN exert their beneficial effects.
Abstract 5580: Preclinical pharmacodynamics and antitumor activity of AZD4635, a novel adenosine 2A receptor inhibitor that reverses adenosine mediated T cell suppression (2017)

Abstract Accumulation of extracellular adenosine within the microenvironment is a strategy exploited by tumors to escape immunosurveillance. Adenosine signaling through the high affinity adenosine 2A receptor (A2AR) on immune cells elicits a range of immunosuppressive effects which can promote tumor growth and limit the efficacy of immune checkpoint inhibitors such as anti-PD-1 or anti-PD-L1 Abs. AZD4635 (HTL-1071), an oral A2AR antagonist, binds to human A2AR with a Ki of 1.7 nM and with &amp;gt; 30-fold selectivity over other adenosine receptors. Accumulation of intratumoral adenosine, measured by desorption electrospray ionisation - mass spectroscopy (DESI-MS), demonstrated that adenosine levels are spatially heterogeneous in mouse syngeneic tumors, with levels varying up to 50 fold among regions of a single tumor. To assess whether AZD4635 can reverse the inhibitory effects of different concentrations of adenosine, CHO cells stably expressing human A2AR were incubated with concentrations of adenosine ranging from 0.1 to 10 μM. In the presence of 0.1, 1 and 10 μM adenosine, the IC50 of AZD4635 for inhibition of cAMP production was 0.79, 10.0 and 142.9 nM, respectively. In an ex vivo CD8+ T cell assay, AZD4635 reversed suppression and restored IFNγ secretion in cells incubated with 5’-N-ethylcarboxamidoadenosine (NECA), a stable analog of adenosine. The therapeutic benefit of A2aR blockade was evaluated in syngeneic mouse tumor models. Inhibition of A2aR signaling led to a reduction in tumor growth alone and in combination with checkpoint inhibitors. Tumors harvested from the treated mice exhibited changes in infiltrating lymphocyte populations and increases in the functional activity of T cells. These results demonstrate that AZD4635 is a potent and selective A2aR inhibitor, and that blockade of A2aR signaling with an inhibitor such as AZD4635 can reduce tumor burden and enhance antitumor immunity. AZD4635 is currently in a Phase 1 clinical trial as a single agent and in combination with durvalumab (anti-PD-L1 Ab) in patients with solid malignancies. Citation Format: Alexandra Borodovsky, Yanjun Wang, Minwei Ye, Joseph C. Shaw, Kris F. Sachsenmeier, Nanhua Deng, Kelly J. DelSignore, Adrian J. Fretland, James D. Clarke, Richard J. Goodwin, Nicole Strittmatter, Carl Hay, Vasu R. Sah, Deborah Lawson, Corinne Reimer, Miles Congreve, Jonathan S. Mason, Fiona H. Marshall, Paul Lyne, Richard Woessner. Preclinical pharmacodynamics and antitumor activity of AZD4635, a novel adenosine 2A receptor inhibitor that reverses adenosine mediated T cell suppression [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017; 2017 Apr 1-5; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2017;77(13 Suppl):Abstract nr 5580. doi:10.1158/1538-7445.AM2017-5580
Identification of a repeated epitope recognized by human serum antibodies in a surface protein antigen of Streptococcus mutans (1996)

This study determined the antigen determinants of a 190-kDa protein antigen of Streptococcus mutans that is involved in the initial attachment to the tooth surface. In 5 subjects, the reactivities of serum antibodies to 7 overlapping surface protein antigen fragments covering the entire antigen molecule and 19 sequential overlapping synthetic 19-mer peptides covering the entire A-region of the surface protein antigen were examined with enzyme-linked immunosorbent assay (ELISA). The study showed that the A-region of the antigen is strongly immunogenic in humans and contains several widely distributed epitopes. In addition, an amino acid sequence of the one of dominant epitopes in a certain subject was identified as LTAENTAI with ELISA inhibition assays using the relevant truncated peptides. This epitope was located both at the positions from L-346 to I-364 and L-430 to E-437 of the antigen molecule, and serum antibodies against the epitope were found in 3 of the 5 subjects.
Aerial application of verbenone reduces attack of lodgepole pine by mountain pine beetle (1992)

Mountain pine beetle, Dendroctonusponderosae Hopkins, is the primary pest affecting lodgepole pine, Pinuscontorta var. latifolia Engelm., ecosystems in western North America. In 1988, aerial treatments of the antiaggregation pheromone, verbenone, were applied to lodgepole pine stands infested with mountain pine beetle in northwestern Montana. The pheromone was formulated by PHERO TECH Inc. in controlled-release, cylindrical 5 × 5 mm plastic beads and applied without benefit of a sticker at the rate of 54 g verbenone per hectare. There were significantly fewer successfully attacked trees on the treated plots, as evidenced by (i) a fourfold greater incidence of current-year attacked trees per hectare in the untreated check plots and (ii) the significantly lower (α = 0.05) ratio of 1988:1987 attacked trees in the treated plots. Further, the number of trees per hectare resisting attacks (as reflected by number of trees pitching out bark beetles) was higher (α = 0.05) in the treated plots. More pitch outs occurred in treated plots presumably because avoidance of verbenone by beetles reduced the number of beetles below that needed to overcome the natural resistance of attacked trees.
Poliovirus hybrids expressing neutralization epitopes from variable domains I and IV of the major outer membrane protein of Chlamydia trachomatis elicit broadly cross-reactive C. trachomatis-neutralizing antibodies (1995)

Trachoma and sexually transmitted diseases caused by Chlamydia trachomatis are major health problems worldwide. Epitopes from the variable domains of the major outer membrane protein are candidates for vaccine development. We have constructed hybrid polioviruses expressing sequences from major outer membrane protein variable domains I and IV. Antisera to the hybrids could, in combination, strongly neutralize 8 of the 12 C. trachomatis serovars most commonly associated with oculogenital infections and weakly neutralize the others.
Recent Progress in the Synthesis of Porous Carbon Materials (2006)

Abstract In this review, the progress made in the last ten years concerning the synthesis of porous carbon materials is summarized. Porous carbon materials with various pore sizes and pore structures have been synthesized using several different routes. Microporous activated carbons have been synthesized through the activation process. Ordered microporous carbon materials have been synthesized using zeolites as templates. Mesoporous carbons with a disordered pore structure have been synthesized using various methods, including catalytic activation using metal species, carbonization of polymer/polymer blends, carbonization of organic aerogels, and template synthesis using silica nanoparticles. Ordered mesoporous carbons with various pore structures have been synthesized using mesoporous silica materials such as MCM‐48, HMS, SBA‐15, MCF, and MSU‐X as templates. Ordered mesoporous carbons with graphitic pore walls have been synthesized using soft‐carbon sources that can be converted to highly ordered graphite at high temperature. Hierarchically ordered mesoporous carbon materials have been synthesized using various designed silica templates. Some of these mesoporous carbon materials have successfully been used as adsorbents for bulky pollutants, as electrodes for supercapacitors and fuel cells, and as hosts for enzyme immobilization. Ordered macroporous carbon materials have been synthesized using colloidal crystals as templates. One‐dimensional carbon nanostructured materials have been fabricated using anodic aluminum oxide (AAO) as a template.
Brain‐Derived Neurotrophic Factor Protects Dopamine Neurons Against 6‐Hydroxydopamine and N‐Methyl‐4‐Phenylpyridinium Ion Toxicity: Involvement of the Glutathione System (1992)

Brain-derived neurotrophic factor (BDNF) has recently been shown to enhance the survival of dopamine neurons in cultures derived from the embryonic rat mesencephalon. We now extend this study by demonstrating that, in addition to the effect of sustaining survival of dopaminergic neurons, BDNF also confers protection against the neurotoxic effects of 6-hydroxydopamine (6-OHDA) and N-methyl-4-phenylpyridinium ion (MPP+). Exposure of mesencephalic cultures to either 6-OHDA or MPP+ resulted in a loss of 70-80% of dopaminergic neurons, as determined by tyrosine hydroxylase (TH) immunocytochemistry. In BDNF-treated cultures, loss of TH-positive cells after exposure to either toxin was reduced to only 30%. To facilitate biochemical measurements, we studied SH-SY5Y dopaminergic neuroblastoma cells. BDNF was found to protect these cells from the dopaminergic neurotoxins, 6-OHDA and MPP+. Indicative of oxidative stress, treatment of SH-SY5Y cells with 10 microM 6-OHDA for 24 h caused a fivefold increase in the levels of oxidized glutathione (GSSG). Pretreatment with BDNF for 24 h completely prevented the rise in GSSG. Further examination revealed that BDNF increased the activity of the protective enzyme, glutathione reductase, by 100%. In contrast, BDNF had no effect on the activity of catalase. These results add further impetus to exploring the therapeutic potential of BDNF in animal models of Parkinson's disease.
Abnormal expression of M1/MUC5AC mucin in distal colon of patients with diverticulitis, ulcerative colitis and cancer (2007)

The abnormal expression of gastric M1/MUC5AC mucin in precancerous lesions and colon cancer evidenced by immunohistochemistry led us to check for its presence in the mucus obtained directly from patients undergoing surgery for cancerous (adenocarcinoma) or inflammatory (diverticulitis or ulcerative colitis) diseases. In parallel, the authors quantified aberrant crypt foci (ACF) and their immunolabelling by M1/MUC5AC in mucosae of cancer and diverticulitis patients. Immuno-Radio-Metric Assay of M1/MUC5AC mucin developed by the authors was used to detect M1/MUC5AC mucin in the colonic mucus scraped from surgical specimens. M1/MUC5AC mucin was detected in the mucus of 51/69 (74%) patients with colon adenocarcinoma, versus 7/27 (26%) patients with diverticulitis (threshold: 30 units of M1 mucin per mg protein, area under ROC curve: 0.80). M1/MUC5AC was present in significantly (p < 0.001) larger amounts in the mucus of cancer versus diverticulitis patients. All (10/10) patients with ulcerative colitis tested showed levels above the threshold and their mucosae were strongly labelled with the anti-M1/MUC5AC antibody by immunohistochemistry. Patients with cancer exhibited 3 fold more ACF than those with diverticulitis, but no significant difference was observed in the mean size and M1/MUC5AC expression pattern of ACF between these two groups. The expression of M1/MUC5AC was in correlation with their size. In macroscopically normal mucosa, ACF were the most important source of M1/MUC5AC mucin. Testing of M1/MUC5AC can enhance the detection of precancerous lesions and colon cancer.
A model of chronic inflammation and pulmonary emphysema after multiple ozone exposures in mice (2011)

Oxidative stress plays a role in the pathophysiology of emphysema through the activation of tissue proteases and apoptosis. We examined the effects of ozone exposure by exposing BALB/c mice to either a single 3-h exposure or multiple exposures over 3 or 6 wk, with two 3-h exposures per week. Compared with air-exposed mice, the increase in neutrophils in bronchoalveolar lavage fluid and lung inflammation index was greatest in mice exposed for 3 and 6 wk. Lung volumes were increased in 3- and 6-wk-exposed mice but not in single-exposed. Alveolar space and mean linear intercept were increased in 6- but not 3-wk-exposed mice. Caspase-3 and apoptosis protease activating factor-1 immunoreactivity was increased in the airway and alveolar epithelium and macrophages of 3- and 6-wk-exposed mice. Interleukin-13, keratinocyte chemoattractant, caspase-3, and IFN-γ mRNA were increased in the 6-wk-exposed group, but heme oxygenase-1 (HO-1) mRNA decreased. matrix metalloproteinase-12 (MMP-12) and caspase-3 protein expression increased in lungs of 6-wk-exposed mice. Collagen area increased and epithelial area decreased in airway wall at 3- and 6-wk exposure. Exposure of mice to ozone for 6 wk induced a chronic inflammatory process, with alveolar enlargement and damage linked to epithelial apoptosis and increased protease expression.
Canadian Urological Association guidelines on urinary incontinence. (2006)

Canadian guidelines on incontinence have been completed in 2005 reflecting the Canadian health environment. This field of UI is in constant progression and, when of proven efficacy, new medications and devices have to be included in the proposed algorithm of care.