gebhart/patrepeval huggingface dataset:
Model-Driven Dashboards for Business Performance Reporting (2006)

Business performance modeling and model-driven business transformation are two research directions that are attracting much attention lately. In this study, we propose an approach for dashboard development that is model-driven and can be integrated with the business performance models. We adopt the business performance modeling framework, and we extend it in order to capture the reporting aspect of the business operation. We describe models that can effectively represent all the elements necessary for the business performance reporting process, and the interactions among them. We also demonstrate how all these models can be combined and automatically generate the final solution. Finally, we discuss our experience from the application of our technique in a real-world scenario. This case study shows that our technique can be efficiently applied to and handle changes in the underlying business models, delivering significant benefits in terms of both development time and flexibility
Selenium metabolism, selenoproteins and mechanisms of cancer prevention: complexities with thioredoxin reductase (1999)

Numerous studies in animal models and more recent studies in humans have demonstrated cancer chemopreventive effects with Se. There is extensive evidence that monomethylated forms of Se are critical metabolites for chemopreventive effects of Se. Induction of apoptosis in transformed cells is an important chemopreventive mechanism. Apoptosis can be triggered by micromolar levels of monomethylated forms of Se independent of DNA damage and in cells having a null p53 phenotype. Cell cycle protein kinase cdk2 and protein kinase C are strongly inhibited by various forms of Se. Inhibitory mechanisms involving modification of cysteine residues in proteins by Se have been proposed that involve formation of Se adducts of the selenotrisulfide (S-Se-S) or selenenylsulfide (S-Se) type or catalysis of disulfide formation. Selenium may facilitate reactions of protein cysteine residues by the transient formation of more reactive S-Se intermediates. A novel chemopreventive mechanism is proposed involving Se catalysis of reversible cysteine/disulfide transformations that occur in a number of redox-regulated proteins, including transcription factors. A time-limited activation mechanism for such proteins, with deactivation facilitated by Se, would allow normalization of critical cellular processes in the early stages of transformation. There is uncertainty at the present time regarding the role of selenoproteins in chemoprevention model systems where supranutritional levels of Se are employed. Mammalian thioredoxin reductase is one selenoprotein that shows increased activity with Se supplementation in the nutritional to supranutritional range. Enhanced thioredoxin reduction could have beneficial effects in oxidative stress, but possible adverse effects are considered. Other functions of thioredoxin reductase may be relevant to cell signaling pathways. The functional status of the thioredoxin/thioredoxin reductase system during in vivo chemoprevention with Se has not been established. Some in vitro studies have shown inhibitory effects of Se on the thioredoxin system correlated with growth inhibition by Se. A potential inactivating mechanism for thioredoxin reductase or other selenoenzymes involving formation of a stable diselenide form resistant to reduction is discussed. New aspects of Se biochemistry and possible functions of new selenoproteins in chemoprevention are described.
SARC Coherence: Scaling Directory Cache Coherence in Performance and Power (2010)

The SARC project seeks to improve power scalability of shared-memory chip multiprocessors (CMPs) by making directory coherence more efficient in both power and performance. The authors describe how they eliminate two major sources of inefficiency for directory coherence protocols: invalidation traffic on writes and directory indirection for finding the writer.
High-Throughput Screen for Poly-3-Hydroxybutyrate in Escherichia coli and Synechocystis sp. Strain PCC6803 (2006)

A novel, quantitative method for detecting poly-3-hydroxybutyrate (PHB) amounts in viable cells was developed to allow for high-throughput screening of mutant libraries. The staining technique was demonstrated and optimized for the cyanobacterium Synechocystis sp. strain PCC6803 and the eubacterium Escherichia coli to maximize the fluorescence difference between PHB-accumulating and control cells by flow cytometry. In Synechocystis, the level of nonspecific dye binding was reduced by using nonionic stain buffer that allowed quantitation of fluorescence levels. In E. coli, the use of a mild sucrose shock facilitated uptake of Nile red without significant loss of viability. The optimized staining protocols yielded a linear response for the mean fluorescence against (chemically measured) PHB. The staining protocols are novel methods useful in the high-throughput evaluation of combinatorial libraries of Synechocystis and E. coli using fluorescence-activated cell sorting to identify mutants with increased PHB-accumulating properties.
Pore-Scale Modeling of Wettability Effects and Their Influence on Oil Recovery (1999)

Summary The wettability of a crude oil/brine/rock system influences both the form of petrophysical parameters (e.g., Pc and krw/kro) and the structure and distribution of remaining oil after secondary recovery. This latter issue is of central importance for improved oil recovery since it represents the "target" oil for any IOR process. In the present study, we have developed a three-dimensional network model to derive capillary pressure curves from nonuniformly wetted (mixed and fractionally wet) systems. The model initially considers primary drainage and the aging process leading to wettability alterations. This is then followed by simulations of spontaneous water imbibition, forced water drive, spontaneous oil imbibition and forced oil drive—i.e., we consider a complete flooding sequence characteristic of wettability experiments. The model takes into account many pore level flow phenomena such as film flow along wetting phase clusters, trapping of wetting and nonwetting phases by snapoff and bypassing. We also consider realistic variations in advancing and receding contact angles. There is a discussion of the effects of additional parameters such as the fraction of oil-wet pores, mean coordination number and pore size distribution upon fractionally and mixed wet capillary pressure curves. Moreover, we calculate Amott oil and water indices using the simulated curves. Results indicate that oil recovery via water imbibition in weakly water-wet cores can often exceed that obtained from strongly water-wet samples. Such an effect has been observed experimentally in the past. The basic physics governing this enhancement in spontaneous water imbibition can be explained using the concept of a capillarity surface. Based on these theoretical calculations, we propose a general "regime based" theory of wettability classification and analysis. We classify a range of experimentally observed and apparently inconsistent waterflood recovery trends into various regimes, depending upon the structure of the underlying oil- and water-wet pore clusters and the distribution of contact angles. Using this approach, numerous published experimental Amott indices and waterflood data from a variety of core/crude oil/brine systems are analyzed.
Decreased plasma gelsolin levels in patients with Plasmodium falciparum malaria: a consequence of hemolysis? (1988)

Mammalian plasma contains a high-affinity actin-binding protein, plasma gelsolin, that severs actin filaments. Destruction of erythrocytes could result in the release of erythrocyte cytoskeletal actin into the plasma where it could bind to gelsolin. If the clearance of actin- gelsolin complexes exceeds its synthesis, lowering of the plasma gelsolin concentration might follow. To test this hypothesis, we measured plasma gelsolin levels in patients with falciparum malaria, a disease where at least part of the hemolysis takes place in the intravascular space and that is usually not accompanied by dysfunction of other organs. Two functional gelsolin assays showed that the mean plasma gelsolin concentration of 18 Nigerian children with Plasmodium falciparum malaria was less than 50% (P less than .001) of healthy Nigerian control subjects tested at the same time. Patients with pneumonia and febrile seizures also had depressed gelsolin levels, which indicates that factors other than hemolysis can lower gelsolin concentrations. Gelsolin levels were measured in 11 patients from The Gambia with P falciparum malaria before and approximately 3 weeks after treatment. In all cases the gelsolin level increased after treatment. To confirm the hypothesis that hemolysis can result in a lowering of plasma gelsolin levels, hemolysis was induced in rabbits, either acutely (by the injection of human serum) or subacutely (by the administration of phenylhydrazine). A fall in plasma gelsolin levels was seen, the rate of fall differing with the extent of hemolysis. Affinity adsorption of plasma from animals undergoing acute hemolysis with Sepharose beads coupled to the actin-binding protein DNase I, followed by immunoblotting of adherent proteins with antiactin antiserum demonstrated the presence of actin in circulating rabbit plasma. These studies suggest that under some conditions components of the red cell cytoskeleton are exposed to plasma proteins and that accelerated clearance of actin-gelsolin complexes may explain in part the depressed plasma gelsolin levels seen in patients with falciparum malaria.
Fungal Diseases of the Lung (1993)

INTRODUCTORY CHAPTERS 1.Mycology and the Clinical Laboratory in the Diagnosis of Respiratory Mycoses 2.Serologic Diagnosis of Fungal Disease T-CELL OPPORTUNISTS 3.Histoplasmosis 4.Blastomycosis 5.Coccidioidomycosis 6.Paracoccidioidomycosis 7.Cyptococcosis 8.Sporotrichosis OVERLAP DISEASE 9.Candida PHAGOCYTE OPPORTUNISTS 10.Aspergillus 11.Zygomycosis of the Respiratory Tract BACTERIAL INFECTIONS MIMICKING FUNGAL INFECTIONS 12.Actinomycosis 13.Nocardiosis OVERVIEW CHAPTERS 14.Fungal Infections Complicating HIV Infection 15.Fungal Infections Complicating Neoplastic Diseases 16.Fungal Infections Complicating Transplantation ANTIFUNGAL THERAPEUTICS 17.Polyene Antifungal Agents 18.Azole Antifungals INDE
Effect of microstructures on the microwave dielectric properties of ZrTiO4 thin films (2001)

To obtain various paraelectric ZrTiO4 thin-film microstructures, the films were synthesized at different deposition temperatures using rf magnetron sputtering. Both the dielectric losses (tan δ) and dielectric constants (ε) of the ZrTiO4 thin films were measured up to 6 GHz using a circular-patch capacitor geometry. The films showed enhanced crystallinity with increasing deposition temperature, as determined from the x-ray diffraction peak widths at various scattering vectors. The microwave dielectric losses correlated very well with the level of crystallinity or strain, while the dielectric constants did not alter significantly.
Relationship between Nuclear Remodeling and Development in Nuclear Transplant Rabbit Embryos1 (1991)

The present study characterized the profile of nuclear remodeling in nuclear transplant rabbit embryos and investigated the relationship between chromatin behavior after transfer and embryo development. The developmental potential and pattern of remodeling of donor nuclei from cleavage-, morula-, and blastocyst- (inner cell mass ICM, and trophectoderm, TE) stage donors were evaluated. In addition, we determined whether a modification in the synchrony between blastomere fusion and oocyte activation altered the profile of nuclear remodeling and affected development of reconstituted embryos. Development to blastocysts was similar with 8- and 32-cell-stage donor nuclei (42% and 33%, respectively, p greater than 0.1). However, it was reduced with ICM transplants (17%, p less than 0.05), and development of TE transplants did not progress beyond the 8-cell stage. Upon blastomere fusion into nonactivated oocyte cytoplasm, nuclear remodeling was characterized by premature chromosome condensation (PCC), followed by pronuclear (PN) formation and swelling. PCC occurred synchronously within 1.2-1.5 h post-fusion with all stages of donor nuclei (p greater than 0.1). PN formation in 8- and 32-cell transplants occurred approximately 4 h after fusion, and was synchronous to that of female pronuclei in activated oocytes; however, it was delayed in ICM and TE transplants (p less than 0.01). With all stages of donor nuclei, final nuclear diameter was similar to, or larger than, that of female pronuclei. Fusion to activated oocyte cytoplasm, as opposed to nonactivated cytoplasm, prevented PCC and extensive nuclear swelling (16.0 +/- 0.7 vs. 30 +/- 0.7 microns, respectively, p less than 0.01). Nuclear diameter in early embryos was smaller (p less than 0.01), and development to blastocysts was reduced (p less than 0.05). The results indicate that remodeling of the donor nucleus is not essential for development to blastocysts; however, it is beneficial. Furthermore, complete reprogramming seems possible only after remodeling of the donor nucleus, i.e., PCC in nonactivated cytoplasm, followed by nuclear swelling upon activation of the oocyte.
Region-of-interest based rate control for low-bit-rate video conferencing (2006)

We present a region of interest (ROI) based rate control for H.263 compatible video conferencing. A face detection and tracking scheme with very low complexity is proposed for segmentation. By analyzing quadratic rate models in frame layer, video object plane (VOP) layer, and macroblock (MB) layer extracted from the test data, a quadratic rate model at the MB layer with a modified physical meaning is proposed to improve the model accuracy. The basic idea is to use a group of uncoded MBs in the current VOP instead of individual MBs to update model parameters. A joint VOP layer and MB layer rate control algorithm is proposed. The VOP layer rate control assigns target bit rate for each VOP based on the coding complexity and visual importance, and determines an average quantization parameter (QP) for each VOP. Some new features of MB layer rate control are designed to utilize both average statistics of a VOP and individual statistics of MB together. The performance is compared with conventional TMN8 and object-based VM8 rate control, better peak SNR (PSNR) for ROI, and more accurate rate control can be achieved for various video sequences. The proposed rate control algorithm can be extended for H.264 ROI-based scalable video coding.
Analysis of MarketScan Data for Immunosuppressive Conditions and Hospitalizations for Acute Respiratory Illness, United States (2020)

Increasing use of immunosuppressive biologic therapies poses a challenge for infectious diseases. Immunosuppressed patients have a high risk for influenza complications and an impaired immune response to vaccines. The total burden of immunosuppressive conditions in the United States, including those receiving emerging biologic therapies, remains unknown. We used the national claims database MarketScan to estimate the prevalence of immunosuppressive conditions and risk for acute respiratory illnesses (ARIs). We studied 47.2 million unique enrollees, representing 115 million person-years of observation during 2012-2017, and identified immunosuppressive conditions in 6.2% adults 18-64 years of age and 2.6% of children <18 years of age. Among 542,105 ARI hospitalizations, 32% of patients had immunosuppressive conditions. The risk for ARI hospitalizations was higher among enrollees with immunosuppression than among nonimmunosuppressed enrollees. Future efforts should focus on developing improved strategies, including vaccines, for preventing influenza in immunosuppressed patients, who are an increasing population in the United States.
Heterogeneity of Left Ventricular Wall Thickening Mechanisms (2008)

These data demonstrate fundamentally different regional contributions of laminar mechanisms for amplifying fiber shortening to systolic wall thickening. Systolic fiber shortening was identical at each transmural depth in both the anterior and lateral LV sites. However, systolic wall thickening of the anterior site was much greater than that of the lateral site. Fiber shortening drives systolic wall thickening, but sheet dynamics and orientations are of great importance to systolic wall thickening. LV wall thickening and its clinical implications pivot on different wall thickening mechanisms in various LV regions. Attempts to implant healthy contractile cells into diseased hearts or to surgically manipulate LV geometry need to take into account not only cardiomyocyte contraction but also transmural LV intercellular architecture and geometry.
AntigenDB: an immunoinformatics database of pathogen antigens (2009)

The continuing threat of infectious disease and future pandemics, coupled to the continuous increase of drug-resistant pathogens, makes the discovery of new and better vaccines imperative. For effective vaccine development, antigen discovery and validation is a prerequisite. The compilation of information concerning pathogens, virulence factors and antigenic epitopes has resulted in many useful databases. However, most such immunological databases focus almost exclusively on antigens where epitopes are known and ignore those for which epitope information was unavailable. We have compiled more than 500 antigens into the AntigenDB database, making use of the literature and other immunological resources. These antigens come from 44 important pathogenic species. In AntigenDB, a database entry contains information regarding the sequence, structure, origin, etc. of an antigen with additional information such as B and T-cell epitopes, MHC binding, function, gene-expression and post translational modifications, where available. AntigenDB also provides links to major internal and external databases. We shall update AntigenDB on a rolling basis, regularly adding antigens from other organisms and extra data analysis tools. AntigenDB is available freely at http://www.imtech.res.in/raghava/antigendb and its mirror site http://www.bic.uams.edu/raghava/antigendb.
Design of a heme-binding four-helix bundle (1994)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTDesign of a heme-binding four-helix bundleChristin T. Choma, James D. Lear, Mark J. Nelson, P. Leslie Dutton, Dan E. Robertson, and William F. DeGradoCite this: J. Am. Chem. Soc. 1994, 116, 3, 856–865Publication Date (Print):February 1, 1994Publication History Published online1 May 2002Published inissue 1 February 1994https://pubs.acs.org/doi/10.1021/ja00082a005https://doi.org/10.1021/ja00082a005research-articleACS PublicationsRequest reuse permissionsArticle Views1156Altmetric-Citations233LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Improved prediction of intraocular lens power using partial coherence interferometry (2001)

Partial coherence interferometry biometry applied to several widely used IOL power formulas yielded significantly better IOL power prediction and therefore refractive outcome in cataract surgery than US biometry. Further improvement can be achieved by applying PCI to a modified SRK/T formula that predicts the postoperative ACD using PCI biometry data.
LiCl Catalyzed Knoevenagel Condensation: Comparative Study of Conventional method vs Microwave Irradiation (1998)

Abstract LiCl catalyzes the condensation of aromatic aldehydes with active methylene compounds either in NMP or DMF at room temperature or under microwave irradiation in dry media to produce olefinic products in high yields.
Arginine-nitric oxide pathway and cerebrovascular regulation in cortical spreading depression (1995)

Nerve cells release nitric oxide (NO) in response to activation of glutamate receptors of the N-methyl-D-aspartate (NMDA) subtype. We explored the hypothesis that NO influences the changes of cerebral blood flow (CBF) during cortical spreading depression (CSD), which is known to be associated with NMDA receptor activation. CBF was monitored in parietal cortex by laser-Doppler flowmetry in halothane-anesthetized rats. Under control conditions, CSD induced regular changes of CBF, which consisted of four phases: a brief hypoperfusion before the direct current (DC) shift; a marked CBF rise during the DC shift; followed by a smaller, but protracted increase of CBF; and a prolonged CBF reduction (the oligemia). NO synthase inhibition by intravenous and/or topical application of NG-nitro-L-arginine enhanced the brief initial hypoperfusion, but the CBF increases and the oligemia were unchanged. L-Arginine prevented the development of the prolonged oligemia after CSD but had no influence on the marked rise of CBF during CSD. Animals treated with L-arginine recovered the reduced vascular reactivity to hypercapnia after CSD much faster than control rats. Functional denervation of cortical and pial arterioles by tetrodotoxin accentuated the pre-CSD hypoperfusion and the oligemia but did not affect the CBF increases. The results suggest that NO is important for the changes of cerebrovascular regulation following CSD. The observations may have clinical importance, since CBF changes during migraine may be triggered by CSD.
A General Synthetic Route to III–V Compound Semiconductor Nanowires (2001)

The oxide-assisted method for the synthesis of gallium arsenide nanowires reported here has the advantage of requiring neither a metal catalyst nor a template, which simplifies the purification and subsequent application of the wires. An SEM image of the nanowires is shown in the Figure. The results of a TEM examination are reported and a growth mechanism is proposed.