gebhart/patrepeval huggingface dataset:
Dual Motion Estimation for Frame Rate Up-Conversion (2010)

In this letter, we present a new motion estimation algorithm for frame rate up-conversion. The proposed dual motion estimation algorithm enhances the estimation accuracy of motion vectors by using the unidirectional and bidirectional matching ratios of blocks in the previous and current frames. In addition, the proposed motion estimation approach uses motion vector validity to evaluate the accuracy of motion vectors thereby avoiding false motion vectors. In experiments using benchmark image sequences, the proposed motion estimation algorithm improved the average peak signal-to-noise ratio of interpolated frames by up to 2.272 dB, when compared to conventional motion estimation algorithms. For the comparison of the perceptual image quality using the structural similarity, the average value of the proposed dual motion estimation was by up to 0.062 higher than those of the conventional algorithms.
Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study (2013)

To the best of our knowledge, this is the first study to discover gut microbiota dysbiosis among gallstone patients, the presence of which may be a key contributor to the complex bacteria community assembly linked with the presence of cholesterol gallstones. Likewise, this study also provides the first large-scale glimpse of biliary tract microbiota potentially associated with cholesterol gallstones. Such a characterization of the biliary tract core microbiome has potentially important biological and medical implications regarding the role of bacteria in the formation cholesterol gallstones.
GDF15 promotes EMT and metastasis in colorectal cancer (2015)

Metastasis is the major cause of cancer deaths, and the epithelial-mesenchymal transition (EMT) has been considered to be a fundamental event in cancer metastasis. However, the role of growth differentiation factor 15 (GDF15) in colorectal cancer (CRC) metastasis and EMT remains poorly understood. Here, we showed that GDF15 promoted CRC cell metastasis both in vitro and in vivo. In addition, the EMT process was enhanced by GDF15 through binding to TGF-β receptor to activate Smad2 and Smad3 pathways. Clinical data showed GDF15 level in tumor tissues, and the serum was significantly increased, in which high GDF15 level correlated with a reduced overall survival in CRC. Thus, GDF15 may promote colorectal cancer metastasis through activating EMT. Promisingly, GDF15 could be considered as a novel prognostic marker for CRC in the clinic.
Thrombin Activatable Fibrinolysis Inhibitor (TAFI) Levels in Patients with Coronary Artery Disease Investigated by Angiography (2002)

Due to its role in the balance between coagulation and fibrinolysis, thrombin activatable fibrinolysis inhibitor (TAFI) may be involved in the development of cardiovascular diseases. We studied 362 patients with coronary artery disease (CAD) and 134 control subjects free of CAD, both groups investigated by angiography. TAFI antigen levels were determined in venous and intracoronary plasma samples and were related to metabolic and hemostatic risk factors and extent of coronary atherosclerosis. Venous TAFI levels tended to be higher in CAD patients compared to controls, whereas this difference was significant in intracoronary samples. A subgroup of patients who had not experienced acute myocardial infarction or undergone previous cardiac interventions showed significantly higher TAFI levels in both venous and intracoronary plasma samples. TAFI levels correlated with acute phase reactants indicating a role for TAFI in inflammation. However, TAFI levels did not correlate with extent of coronary atherosclerosis and among the classical cardiovascular risk factors TAFI levels only correlated with total cholesterol and fibrinogen concentration. Our results suggest that TAFI might be a risk factor for the development of CAD.
Planning Optimal Paths for Multiple Robots on Graphs (2012)

In this paper, we study the problem of optimal multi-robot path planning (MPP) on graphs. We propose two multiflow based integer linear programming (ILP) models that computes minimum last arrival time and minimum total distance solutions for our MPP formulation, respectively. The resulting algorithms from these ILP models are complete and guaranteed to yield true optimal solutions. In addition, our flexible framework can easily accommodate other variants of the MPP problem. Focusing on the time optimal algorithm, we evaluate its performance, both as a stand alone algorithm and as a generic heuristic for quickly solving large problem instances. Computational results confirm the effectiveness of our method.
Membrane‐electrode assembly enhances performance of a microbial fuel cell type biological oxygen demand sensor (2009)

A membrane-electrode assembly (MEA) was applied to a microbial fuel cell (MFC) type biological oxygen demand (BOD) sensor and the performance of the sensor was assessed. To establish the optimal conditions for MEA fabrication, platinum-catalysed carbon cloth cathodic electrodes were assembled with cation exchange membranes under various temperatures and pressures. By analysing coulombs from the MFCs, it could be determined that the optimal hot-pressing conditions were 120 degrees C and 150 kg cm(-2) for 30 s. When the MEA fabricated under optimal conditions and an air cathode were utilized for the construction of the MFC type BOD sensor, coulombs increased to 4.65 C from 0.52 C and power increased to 69,080 mW m(-3) from 880 mW m(-3) (at a BOD concentration of 200 mg L(-1)), respectively, compared with the conventional MFC lacking a MEA. The increased power improved the performance of the MFC type BOD sensor: sensitivity increased from 1.2 x 10(-3) to 1.8 x 10(-2) C per mg L(-1) of BOD, with good linearity (r2 = 0.97) and over 97% repeatability. We conclude that the MEA can be successfully applied to MFCs to make them highly sensitive BOD sensors.
Human Cytomegalovirus I. Purification and Characterization of Viral DNA (1973)

Two human strains (AD-169 and C87) and one simian strain (GR2757) of cytomegalovirus (CMV) have been purified from the extracellular fluids of virus-infected cultures by sedimentation through a sucrose gradient followed by brief centrifugation in a preformed gradient of CsCl. Enveloped virus particles were located in the density region, 1.219 g/cm(3), and nucleocapsids at 1.263 g/cm(3). Purified viral DNA, both human and simian, sedimented in the region of 55S in neutral sucrose gradients with herpes simplex type I DNA as a marker; the molecular weight of the CMV DNA was estimated as approximately 10(8). The density of the viral DNA determined by analytical ultracentrifugation was 1.716 g/cm(3) for the human strains and 1.710 g/cm(3) for the simian strain. Tritiated viral complementary RNA synthesized in vitro with Escherichia coli transcriptase has been used for detection and localization of viral genome in membrane hybridization and in situ cytohybridization. Newly synthesized viral DNA appeared 24 h after infection and localized at two acrocentric areas; later the viral DNA distributed in a band resembling intranuclear inclusions 48 to 70 h after infection. Total DNA synthesis began to increase 24 h after infection and reached its peak at 70 h; RNA synthesis increased at 13 h, and reached its peak at 24 to 33 h. The viral DNA was also labeled with (3)H-TTP by repair-synthesis in vitro with Kornberg's enzyme in order to analyze the purity of the DNA and for detection of viral DNA by DNA-DNA reassociation kinetics.
Mapping cocaine binding sites in human and baboon brain in vivo (1989)

The first direct measurements of cocaine binding in the brain of normal human volunteers and baboons have been made by using positron emission tomography (PET) and tracer doses of [N-11C-methyl]-(-)-cocaine ([11C]cocaine). Cocaine's binding and release from brain are rapid with the highest regional uptake of carbon-11 occurring in the corpus striatum at 4-10 minutes after intravenous injection of labeled cocaine. This was followed by a clearance to half the peak value at about 25 minutes with the overall time course paralleling the previously documented time course of the euphoria experienced after intravenous cocaine administration. Blockade of the dopamine reuptake sites with nomifensine reduced the striatal but not the cerebellar uptake of [11C]cocaine in baboons indicating that cocaine binding is associated with the dopamine reuptake site in the corpus striatum. A comparison of labeled metabolites of cocaine in human and baboon plasma showed that while cocaine is rapidly metabolized in both species, the profile of labeled metabolites is different, with baboon plasma containing significant amounts of labeled carbon dioxide, and human plasma containing no significant labeled carbon dioxide. These studies demonstrate the feasibility of using [11C]cocaine and PET to map binding sites for cocaine in human brain, to monitor its kinetics, and to characterize its binding mechanism by using appropriate pharmacological challenges.
Hematopoietic effects of benzene inhalation assessed by long-term bone marrow culture. (1996)

The strong and long-lasting hematotoxic effect after benzene exposure in vivo (300 ppm, 6 hr/day, 5 days/week for 2 weeks) was assessed in mice with bone marrow cells grown in long-term bone marrow culture (LTBMC). Bone marrow cultures initiated 1 day after the last benzene exposure did not produce adequate numbers of hematopoietic cells over 3 weeks, and, in most cases, no erythroid or myeloid clonogenic cells could be recovered. The adherent cell layer of these cultures had a lowered capacity for supporting in vitro hematopoiesis after the second seeding with normal bone marrow cells compared with control cultures. Two weeks after the last benzene exposure, body weight, hematocrit, bone marrow cellularity, and committed hematopoietic progenitor content (BFU-E and CFU-GM) were regenerated to normal or subnormal values, whereas hematopoiesis in LTBMC was very poor. Over 8 weeks, little or no significant committed progenitor production was observed. Treatment of mice exposed to benzene with hemin (three doses of 3 micrograms/g bw i.v. over 2 weeks for a total dose of 9 micrograms/g) partially overcame the toxic effect of benzene on the hematopoietic system as measured by the LTBMC method. Cultures from mice treated with hemin had a modest recovery of BFU-E and CFU-GM clonogenic potential after 5 to 6 weeks in LTBMC. In contrast, little or no recovery was obtained for the adherent cell layer clonogenic capacity, even after hemin treatment. These results clearly indicate a strong, long-lasting toxic effect on the bone marrow stroma and a limited recovery of hematopoietic potential by clonogenic cells of the nonadherent population after in vivo hemin treatment.
A humanized monoclonal antibody to carcinoembryonic antigen, labetuzumab, inhibits tumor growth and sensitizes human medullary thyroid cancer xenografts to dacarbazine chemotherapy (2004)

A variety of observations have shown that carcinoembryonic antigen (CEA) is associated with growth and metastasis of cancers, including correlation of CEA serum levels with poor clinical outcome, mediation of cell-cell adhesion by CEA, and involvement of CEA in the immune recognition of tumors and apoptotic pathways. The purpose of this study was to investigate the effect that an anti-CEA monoclonal antibody (MAb) may have on the growth of medullary thyroid cancer (MTC), a CEA-expressing tumor, alone and in combination with chemotherapy. Antitumor effects were evaluated in a nude mouse-human MTC xenograft model. Using the TT MTC cell line grown s.c., we compared tumor growth in untreated mice with that of mice given the humanized anti-CEA MAb labetuzumab or an isotype-matched control MAb. The effects of time of administration post-tumor injection, MAb dose response, specificity of response, and combination with dacarbazine (DTIC) chemotherapy were studied. The humanized anti-CEA MAb, labetuzumab, has direct, specific, antitumor effects in this model, without conjugation to a cytotoxic agent. In addition, labetuzumab sensitizes these tumor cells to chemotherapy with an effective drug in this model, DTIC, without increased toxicity. Significant delays in tumor growth were caused by the MAb therapy or chemotherapy alone; however, the combination of these agents was significantly more effective than either agent given as a monotherapy or use of an irrelevant MAb in this model. The superiority of the combined modality treatment argues for the integration of CEA MAb therapy into chemotherapeutic regimens for MTC management and possibly other CEA-expressing neoplasms.
A simple short-channel MOSFET model and its application to delay analysis of inverters and series-connected MOSFETs (2002)

A simple short-channel MOSFET model is proposed and applied to the delay analysis of CMOS inverters and series-connected MOSFET structures (SCMSs). The model is implemented in SPICE3 and shown to enhance the simulation speed. The model parameters for this model can be easily obtained. A delay analysis of the SCMS is carried out in the submicron region, and it is shown that the delay ratio ((delay of NAND/NOR)/(delay of inverter)) becomes smaller as channel length gets shorter. For example, if the maximum number of series-connected MOSFETS is considered to be five in 2- mu m designs, then the number can be increased to 6 approximately 7 in the submicron circuit design. In the typical cases in VLSI designs, the delay ratio for N-SCMSs is much less than N/sup 2/.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Establishment and characterization of four human epithelial ovarian carcinoma cell lines (1994)

The ability of these cells to grow in low concentrations of serum or in serum-free conditions should prove useful for the in vitro study of factors affecting the growth of human ovarian carcinoma. The serum-free medium developed will be of use in the isolation of factors from the conditioned medium of these cell lines and previously established cell lines.
Stress failure of pulmonary capillaries in racehorses with exercise-induced pulmonary hemorrhage (1993)

Bleeding into the lungs in thoroughbreds is extremely common; there is evidence that it occurs in essentially all horses in training. However, the mechanism is unknown. We tested the hypothesis that exercise-induced pulmonary hemorrhage (EIPH) is caused by stress failure of pulmonary capillaries. Three thoroughbreds with known EIPH were galloped on a treadmill, and after the horses were killed with intravenous barbiturate the lungs were removed, inflated, and fixed for electron microscopy. Ultrastructural studies showed evidence of stress failure of pulmonary capillaries, including disruptions of the capillary endothelial and alveolar epithelial layers, extensive collections of red blood cells in the alveolar wall interstitium, proteinaceous fluid and red blood cells in the alveolar spaces, interstitial edema, and fluid-filled protrusions of the endothelium into the capillary lumen. The appearances were consistent with the ultrastructural changes we have previously described in rabbit lungs at high capillary transmural pressures. Actual breaks in the endothelium and epithelium were rather difficult to find, and they were frequently associated with platelets and leukocytes that appeared to be plugging the breaks. The paucity of breaks was ascribed to their reversibility when the pressure was lowered and to the fact that 60-70 min elapsed between the gallop and the beginning of lung fixation. Capillary wall stress was calculated from pulmonary vascular pressures measured in a companion study (Jones et al. FASEB J. 6: A2020, 1992) and from measurements of the thickness of the blood-gas barrier and the radius of curvature of the capillaries. The value was as high as 8 x 10(5) dyn/cm2 (8 x 10(4) N/m2), which exceeds the breaking stress of most soft tissues. We conclude that stress failure of pulmonary capillaries is the mechanism of EIPH.
Lymphokines and interferons : a practical approach (1987)

Induction, production and purification of natural mouse IFN-a and b Induction, production and purification of murine gamma interferon Production and purification of recombinant mouse interferon -y from E.Coli Production of human interferon -a Production of recombinant interferons by expression in heterologous mammalian cells Biological assays for interferons Quantitation of IFN mRNA Antibodies against interferons: characterization of interferos and immunoassays Quantification of interferons by anti-viral assays and their standardization Analysis of anti-viral mechanisms: interferon-regulated 2'5' oligoadenylate and protein kinase systems Cell growth inhibition by interferons and tumour necrosis factor Cytoxicity assays for tumour necrosis factor and lymphotoxin Anti-microbial and hydrogen peroxide assays for mafs In vitro tumour cytotoxicity assays for macrophage activation Measurement of interleukin-1 activity Production and assay of interleukin 2 Assays for interleukin 3 and other myeloid colony-stimulating factors Eosinophil differentiation factor and its associated B cell growth factor activities Assays for human B cell growth and differentiation factors
Generalized Procrustes Analysis (1975)

Suppose P i ( i ) ( i = 1, 2, ..., m, j = 1, 2, ..., n ) give the locations of mn points in p -dimensional space. Collectively these may be regarded as m configurations, or scalings, each of n points in p -dimensions. The problem is investigated of translating, rotating, reflecting and scaling the m configurations to minimize the goodness-of-fit criterion Σ i=1 m Σ i=1 n Δ 2 ( P j ( i ) G i ), where G i is the centroid of the m points P i ( i ) ( i = 1, 2, ..., m ). The rotated positions of each configuration may be regarded as individual analyses with the centroid configuration representing a consensus, and this relationship with individual scaling analysis is discussed. A computational technique is given, the results of which can be summarized in analysis of variance form. The special case m = 2 corresponds to Classical Procrustes analysis but the choice of criterion that fits each configuration to the common centroid configuration avoids difficulties that arise when one set is fitted to the other, regarded as fixed.
Mastitis and Immunological Factors in Breast Milk of Human Immunodeficiency Virus-infected Women (1999)

Human milk contains important immunological factors that protect the breast from infection and are thought to protect infants from infection, including human immunodeficiency virus (HIV) infection. Human milk immunological factors have not been well characterized in HIV-infected lactating women. Lysozyme, secretory leukocyte protease inhibitor (SLPI), sodium (an indicator of mastitis), and HIV were measured in breast milk of 334 HIV-infected women at 6 weeks postpartum. Women with mastitis, as indicated by elevated breast milk sodium concentrations, had higher median levels lysozyme (290 vs 221 mg/L, p < 0.04), SLPI (38 vs 19 mg/L, p < 0.0001) and HIV (920 copies/mL vs undetectable, p < 0.0001) compared with women without mastitis. Lower total plasma carotenoid levels (p < 0.02) and higher maternal HIV load (p < 0.006) by quartile were risk factors for mastitis. Mastitis, as indicated by elevated breast milk sodium levels, is associated with high concentrations of immunological factors and higher HIV load in breast milk.
Tunable-focus liquid lens controlled using a servo motor (2006)

We demonstrated a liquid lens whose focal length can be controlled by an actuator. The lens cell is composed of elastic membrane, planar glass plate, a periphery sealing ring, and a liquid with a fixed volume in the lens chamber. Part of the periphery sealing ring is excavated to form a hollow chamber which functions as a reservoir. This hollowed periphery is surrounded by an exterior rubber membrane. The shaft of an actuator is used to deform the elastic rubber. Squeezing the liquid contained in the reservoir into the lens chamber. Excess liquid in the lens chamber will push the lens membrane to outward, resulting in a lens shape change. Due to the compact structure and easy operation, this liquid lens has potential applications in zoom lenses, auto beam steering, and eyeglasses.
A Bus-Based Smart Myoelectric Electrode/Amplifier—System Requirements (2011)

The evaluation of a bus-based smart myoelectric electrode/amplifier is described that is to be used in conjunction with a multi-function prosthetic hand controller. The smart electrode/amplifier was designed to meet power consumption and size specifications of commercially available myoelectric amplifiers used for prosthetic control applications while providing a number of additional features. This paper investigates the electrode/amplifier requirements for a pattern classifier system and compares them to those currently accepted within a clinical setting. System testing and evaluation was performed with both normally limbed subjects and traumatic amputees.
Association of HLA–Dw16 with rheumatoid arthritis in Yakima Indians. Further evidence for the “shared epitope” hypothesis (1991)

Rheumatoid arthritis (RA) is prevalent in Yakima Indians, a Native American tribe. HLA-DR4, the HLA specificity commonly associated with RA in Caucasians, is rare among the Yakima. Using a specific oligonucleotide probe that recognizes DR4 nucleotide sequences associated with RA, a rare HLA-Dw16 gene was identified in 83% of Yakima patients with RA and in 60% of Yakima control subjects. This shared sequence encodes a discrete class II epitope that is highly correlated with RA in both DR4 positive and DR4 negative individuals.
Effects of antithrombospondin monoclonal antibodies on the agglutination of erythrocytes and fixed, activated platelets by purified thrombospondin (1985)

A monoclonal antibody (Mab) has been raised against native thrombospondin (TSP), the endogenous lectin of human platelets, that inhibits the hemagglutination of trypsinized, glutaraldehyde-fixed human erythrocytes by purified TSP. This Mab, designated A2.5, also inhibits the agglutination of fixed, activated platelets by TSP. Mab A2.5 immunoprecipitates a 25-kilodalton (kDa) peptide from chymotryptic digests of TSP that is not disulfide bonded to any other region of the TSP molecule. This fragment represents the previously characterized heparin binding domain of TSP [Dixit, V.M., Grant, G.A., Santoro, S.A., & Frazier, W.A. (1984) J. Biol. Chem. 259, 10100-10105]. In agreement with this assignment, heparin inhibits the binding of Mab A2.5 to TSP. Another Mab, designated C6.7, also blocks TSP-mediated hemagglutination, yet has no effect on the agglutination of fixed, activated platelets by TSP. This Mab has been shown to inhibit the thrombin-stimulated aggregation of live platelets and to immunoprecipitate an 18-kDa fragment from chymotryptic digests, which is distinct from the heparin binding domain [Dixit, V.M., Haverstick, D.M., O'Rourke, K.M., Hennessy, S.W., Grant, G.A., Santoro, S.A., & Frazier, W.A. (1985) Proc. Natl. Acad. Sci. U.S.A. 82, 3472-3476].
The emerging role of new protein scaffold-based agents for treatment of cancer. (2014)

In order to overcome limitations of monoclonal antibodies, new protein-based scaffolds have been designed and evaluated pre-clinically, and some of them are in clinical studies for the treatment of cancer. These entities can be placed into two categories: scaffolds which bind ligands via amino acids in exposed loops and those in which ligand binding is mediated by amino acids in secondary structures, such as β-sheet modules. Accordingly, we discuss adnectins, lipocalins, Kunitz domain-based binders, avimers, knottins, fynomers, atrimers and cytotoxic T-lymphocyte associated protein-4 (CTLA4)-based binders which fall into the first category, while darpins, affibodies, affilins and armadillo repeat protein-based scaffolds are members of the second category. In addition, we also discuss the new molecular entities as imaging tools and outline their unique characteristics in the context of multimeric and multivalent binding.