gebhart/patrepeval huggingface dataset:
The Brief Experiential Avoidance Questionnaire: Development and initial validation. (2013)

The 62-item Multidimensional Experiential Avoidance Questionnaire (MEAQ) was recently developed to assess a broad range of experiential avoidance (EA) content. However, practical clinical and research considerations made a briefer measure of EA desirable. Using items from the original 62-item MEAQ, a 15-item scale was created that tapped content from each of the MEAQ's six dimensions. Items were selected on the basis of their performance in 3 samples: undergraduates (n = 363), psychiatric outpatients (n = 265), and community adults (n = 215). These items were then evaluated using 2 additional samples (314 undergraduates and 201 psychiatric outpatients) and cross-validated in 2 new, independent samples (283 undergraduates and 295 community adults). The resulting measure (Brief Experiential Avoidance Questionnaire; BEAQ) demonstrated good internal consistency. It also exhibited strong convergence with respect to each of the MEAQ's 6 dimensions. The BEAQ demonstrated expected associations with measures of avoidance, psychopathology, and quality of life and was distinguishable from negative affectivity and neuroticism.
The SIESTA method forab initioorder-Nmaterials simulation (2002)

35 pages, 8 figures.-- Printed version published on Mar 25, 2002.-- ArXiv pre-print available at: http://arxiv.org/abs/cond-mat/0111138
STAGA Recruits Mediator to the MYC Oncoprotein To Stimulate Transcription and Cell Proliferation (2007)

Activation of eukaryotic gene transcription involves the recruitment by DNA-binding activators of multiprotein histone acetyltransferase (HAT) and Mediator complexes. How these coactivator complexes functionally cooperate and the roles of the different subunits/modules remain unclear. Here we report physical interactions between the human HAT complex STAGA (SPT3-TAF9-GCN5-acetylase) and a "core" form of the Mediator complex during transcription activation by the MYC oncoprotein. Knockdown of the STAF65gamma component of STAGA in human cells prevents the stable association of TRRAP and GCN5 with the SPT3 and TAF9 subunits; impairs transcription of MYC-dependent genes, including MYC transactivation of the telomerase reverse transcriptase (TERT) promoter; and inhibits proliferation of MYC-dependent cells. STAF65gamma is required for SPT3/STAGA interaction with core Mediator and for MYC recruitment of SPT3, TAF9, and core Mediator components to the TERT promoter but is dispensable for MYC recruitment of TRRAP, GCN5, and p300 and for acetylation of nucleosomes and loading of TFIID and RNA polymerase II on the promoter. These results suggest a novel STAF65gamma-dependent function of STAGA-type complexes in cell proliferation and transcription activation by MYC postloading of TFIID and RNA polymerase II that involves direct recruitment of core Mediator.
The effect of conformation of the acyloxyalkoxy‐based cyclic prodrugs of opioid peptides on their membrane permeability (1999)

In an earlier study using Caco-2 cells, an in vitro cell culture model of the intestinal mucosa, we have shown that the acyloxyalkoxy-based cyclic prodrugs 3 and 4 of the opioid peptides [Leu5]-enkephalin(1, H-Tyr-GLY-Gly-Phe-Leu-OH) and DADLE(2, H-Tyr-D-Ala-Gly-Phe-D-Leu-OH), respectively, were substrates for apically polarized efflux systems and therefore less able to permeate the cell monolayers than were the opioid peptides themselves. In an attempt to explain how structure may influence the recognition of these cyclic prodrugs as substrates by the apically polarized efflux systems, we have determined the possible solution conformations of 3 and 4 using spectroscopic techniques (2D-NMR, CD) and molecular dynamics simulations. Spectroscopic as well as computational studies indicate that cyclic prodrug 4 exhibits a major and a minor conformer in a ratio of 3:2 where both conformers exhibit gamma and beta-turn structures. Spectroscopic, as well as molecular dynamics, studies indicate that the difference between the two conformers involves a cis/trans inversion occurring at the amide bond between the promoiety and Tyr1. The major conformer has a trans amide bond between the promoiety and Tyr1, whereas the minor conformer has a cis amide bond. The spectroscopic data indicate that cyclic prodrug 3 has a structure similar to that of the major conformer in cyclic prodrug 4. It has recently been reported that a particular arrangement of polar groups and spatial separation distances is required for substrate recognition by P-glycoprotein. When the conformation of the acyloxyalkoxy linker was investigated in the major and minor conformers of cyclic prodrug 4, with respect to distances between the polar functional groups, this ideal fixed spatial orientation was observed. Interestingly this same spatial orientation of polar functional groups was not observed for other cyclic prodrugs prepared by our laboratory using different chemical linkers (coumarinic acid and phenylpropionic acid) but the same opioid peptides that had previously been shown not to be substrates for the apically polarized efflux systems. Therefore, we hypothesize that the structure and/or the flexibility of the acyloxyalkoxy linker itself allows cyclic prodrugs 3 and 4 to adopt conformations that permit ideal arrangement of polar groups in the linker and their fixed spatial orientation. This possibly induces the substrate activity of cyclic prodrugs 3 and 4 for the apically polarized efflux systems.
ROLLER-COMPACTED CONCRETE - A UK FIRST (2002)

The 12 Quays roll-on/roll-off project at Wallasey Docks in Birkenhead has become the first commercial scheme in the UK to use roller-compacted concrete (RCC). The RCC has been used to provide a final running surface of 70,000 sq.m, which will be exposed to heavy trafficking and point loading. The project involved paving over existing ground and infilling the dock to provide land for new hardstanding. RCC is placed with conventional or high-density asphalt paving equipment and then compacted with rollers. Details are given of the materials and mix design, mixing and quality control, transport, laying, compaction using a Bomag 161 tandem roller, quality control, and benefits of using RCC.
Cloning, nucleotide sequence, and expression of the Escherichia coli fabD gene, encoding malonyl coenzyme A-acyl carrier protein transacylase (1992)

The Escherichia coli fabD gene encoding malonyl coenzyme A-acyl carrier protein transacylase (MCT) was cloned by complementation of a thermosensitive E. coli fabD mutant (fabD89). Expression of the fabD gene in an appropriate E. coli expression vector resulted in an accumulation of the MCT protein of up to 10% of total soluble protein, which was accompanied by an approximately 1,000-fold increase in the MCT activity. DNA sequence analysis and expression studies revealed that the fabD gene is part of an operon consisting of at least three genes involved in fatty acid biosynthesis. Comparison with available DNA and protein data bases suggest that a 3-ketoacyl-acyl carrier protein synthase and a ketoacyl-acyl carrier protein reductase gene are located immediately upstream and downstream, respectively, of fabD within this fab operon. Western immunoblot analysis with antiserum raised against wild-type E. coli MCT showed that the fabD89 allele encodes a polypeptide with an apparent molecular weight of 27,000 in addition to the normal MCT protein of 32,000. The nature of the temperature-sensitive fabD89 gene product is discussed.
Update in Vitamin D (2010)

The past decade, particularly the last 18 months, witnessed a vigorous increase in interest in vitamin D from both the lay and biomedical worlds. Much of the growing interest in vitamin D is powered by new data being extracted from the National Health and Nutrition Examination Survey (NHANES). The newest statistics demonstrate that more than 90% of the pigmented populace of the United States (Blacks, Hispanics, and Asians) now suffer from vitamin D insufficiency (25-hydroxyvitamin D <30 ng/ml), with nearly three fourths of the white population in this country also being vitamin D insufficient. This represents a near doubling of the prevalence of vitamin D insufficiency seen just 10 yr ago in the same population. This review attempts to provide some explanation for: 1) the rapid decline in vitamin D status in the United States; 2) the adverse impact of vitamin D insufficiency on skeletal, infectious/inflammatory, and metabolic health in humans; and 3) the therapeutic rationale and reliable means for vigorous supplementation of our diets with vitamin D.
Time-dependent oral delivery systems for colon targeting (1995)

Une forme pharmaceutique orale constituee d'un noyau recouvert de deux couches polymeriques est proposee pour la liberation specifique de principes actifs au niveau du colon. Le systeme, concu afin d'exploiter le temps de transit relativement constant de l'intestin grele, repond de facon satisfaisante aux imperatifs des systemes positionnes en fonction du temps, c'est-a-dire resistance aux milieux acides, phase inactive de furee predeterminee et liberation rapide fu principe actif la couche externe se dissout a pH>5 tandis que la couche interne constitue la partie retard. Des solutions aqueuses d'hydroxypropylmethyl cellulose (HPMC) de basse viscosite ont ete utilisees comme produit d'enrobage retard pour des noyaux contenant un marqueur. Des operations conventionnelles d'enrobage ont ete realisees en lit fluidise ou en turbine, donnant des produits avec une couche d'enrobage de bonne qualite technologique. Une modulation precise du temps de latence a ete obtenue en variant l'epaisseur de la couche du film retard d'HPMC, qui fonctionne selon un mecanisme de gonflement et d'erosion. Ces systemes dependant du temps sont destines a transporter, en fonction des conditions du transit intestinal, un noyau solide intact jusqu'a des parties specifiques de l'intestin avant le debut de la liberation du principe actif
Celastrol protects against MPTP‐ and 3‐nitropropionic acid‐induced neurotoxicity (2005)

Oxidative stress and inflammation are implicated in neurodegenerative diseases including Parkinson's disease (PD) and Huntington's disease (HD). Celastrol is a potent anti-inflammatory and antioxidant compound extracted from a perennial creeping plant belonging to the Celastraceae family. Celastrol is known to prevent the production of proinflammatory cytokines, inducible nitric oxide synthase and lipid peroxidation. Mice were treated with celastrol before and after injections of MPTP, a dopaminergic neurotoxin, which produces a model of PD. A 48% loss of dopaminergic neurons induced by MPTP in the substantia nigra pars compacta was significantly attenuated by celastrol treatment. Moreover, celastrol treatment significantly reduced the depletion in dopamine concentration induced by MPTP. Similarly, celastrol significantly decreased the striatal lesion volume induced by 3-nitropropionic acid, a neurotoxin used to model HD in rats. Celastrol induced heat shock protein 70 within dopaminergic neurons and decreased tumor necrosis factor-alpha and nuclear factor kappa B immunostainings as well as astrogliosis. Celastrol is therefore a promising neuroprotective agent for the treatment of PD and HD.
Biosynthesis of arachidonic acid in the oleaginous microalga Parietochloris incisa (Chlorophyceae): Radiolabeling studies (2002)

The fresh-water green alga Parietochloris incisa is the richest plant source of the PUFA arachidonic acid (20:4n-6, AA). To elucidate the biosynthesis of AA in this alga we labeled cultures of P. incisa with radioactive precursors. Pulse chase labeling with acetate resulted in its incorporation via the de novo biosynthesis pathway of FA. However, labeled acetate was also utilized for the elongation of C16 and C18 PUFA. Labeling with [1-14C]oleic acid has shown that the first steps of the lipid-linked FA desaturations utilize cytoplasmic lipids. PC and diacylglyceryltrimethylhomoserine are the major lipids involved as acyl carriers for the delta12 and delta6 desaturations of oleic acid, leading sequentially to linoleic and gamma-linolenic acids. The latter is released from its lipid carrier and elongated to 20:3n-6, which is reincorporated primarily into PE and PC and finally desaturated to AA. Galactolipids, mostly monogalctosyldiacyl-glycerol (MGDG), serve as substrates for the chloroplastic delta12 desaturase and, apparently, the omega3 desaturation, common to higher plants and many green algae. The predominant sequence desaturates the 18:1/16:0 molecular species of MGDG stepwise to the 18:3n-3/16:3n-3 molecular species similar to the prokaryotic pathway of higher plants and green algae.
ChemInform Abstract: O‐(N′‐ACYLAMINOACYL)‐N‐(ARYLSULFONYL)‐HYDROXYLAMINES AND THEIR APPLICATION IN SYNTHESES OF PEPTIDE BONDS (1975)

Abstract Die acylierten Aminosäuren (I) reagieren mit den Hydroxylaminen (II) bzw. (IV) nach der Mischanhydrid‐Methode und in einigen Fällen unter Verwendung von Dicyclohexylcarbodiimid (DCCI) zu den Titelverbindungen (III) bzw. (V).
High-Sensitivity Aminoazobenzene Chemisorbed Monolayers for Photoalignment of Liquid Crystals (2008)

We describe a new type of optically controlled liquid crystal alignment layer that demonstrates unprecedented performance. It consists of an aminoazobenzene-type material with a very simple molecular structure, which is derived from methyl red by a one-step synthesis. We have devised a method of forming covalently attached monolayers of this material on glass by an amine-assisted condensation reaction involving the triethoxysilane end of the molecule. A nematic liquid crystal (LC) cell made with the monolayer and a rubbed polymer layer was switched from a uniform state to a twisted state with a polarized 450 nm control beam having a dose of 5.5 mJ/cm(2). This is equivalent to an average of only one absorbed photon per azobenzene group. Through atomic force microscopy, absorption spectroscopy, spectroscopic ellipsometry, and second harmonic generation experiments, we have confirmed that layers of this type are smooth and uniform with a surface coverage consistent with a monolayer and that the azobenzene groups are tilted, on average, 55 degrees with respect to the surface normal. These characteristics lead to a large interaction energy density between the layer and LC. The monolayer's rapid response in developing anisotropy in this property can be attributed to a large absorption cross section, as well as the favorable tilt angle, which allows for sufficient photoisomerization free volume in a dense layer.
Chemical structure and catalytic activity of quaternary onium salt‐type triphase catalysts based on CPS microspheres (2011)

Abstract In this work, diversified quaternary onium salt‐type triphase catalysts (TPC) were prepared based on crosslinked polystyrene (CPS) microspheres, and the relationship between their chemical structures and catalytic activities in liquid‐solid‐liquid reaction system were investigated in depth by using the esterification reaction of benzyl chloride with sodium acetate as a model system. The experimental results indicate that the chemical structures of the TPC affect their catalytic activity greatly and there are four basic points: (1) the quaternary phosphonium‐type TPC have higher activity than quaternary ammonium‐type catalyst; (2) the TPC with more lipophilic substitutes at N atom have higher catalytic activity; (3) the TPC with longer spacer arm, which links quaternary onium salt group to the matrix microsphere, have higher catalytic activity; (4) the bonding density of quaternary onium salt group on the polymeric carrier affects the hydrophilic and hydrophobic property of the TPC, and consequently, influences the catalytic activity significantly. For a given triphase catalysis system, there is an optimal bonding density of quaternary onium salt group on the solid catalysts. © 2011 Wiley Periodicals, Inc. J Appl Polym Sci, 2011
Pairing of T‐cell receptor chains via emulsion PCR (2013)

Our ability to analyze adaptive immunity and engineer its activity has long been constrained by our limited ability to identify native pairs of heavy-light antibody chains and alpha-beta T-cell receptor (TCR) chains--both of which comprise coupled "halves of a key", collectively capable of recognizing specific antigens. Here, we report a cell-based emulsion RT-PCR approach that allows the selective fusion of the native pairs of amplified TCR alpha and beta chain genes for complex samples. A new type of PCR suppression technique was developed that makes it possible to amplify the fused library with minimal noise for subsequent analysis by high-throughput paired-end Illumina sequencing. With this technique, single analysis of a complex blood sample allows identification of multiple native TCR chain pairs. This approach may be extended to identify native antibody chain pairs and, more generally, pairs of mRNA molecules that are coexpressed in the same living cells.
Fabrication of porous TiO2–SiO2 multifunctional anti-reflection coatings by sol–gel spin coating method (2014)

Fabrication of a self-cleaning anti-reflection coating that can degrade gaseous pollutants and applied contaminants to maintain long-term transmittance property.
Superantigen Vaccines: A Comparative Study of Genetically Attenuated Receptor-Binding Mutants of Staphylococcal Enterotoxin A (1996)

Superantigens exert their pathologic effects by direct binding to major histocompatibility complex (MHC) class II molecules and T cell antigen receptors (TCR), thus circumventing the normal, antigen-specific immune response. A direct link between disease and toxin suggests an excellent opportunity for vaccine intervention. Site-directed mutants of staphylococcal enterotoxin A (SEA) that have attenuated binding to either the TCR or the MHC class II molecule were developed. Both kinds of SEA mutants induced high levels of antibody against SEA when used as vaccines, and the immunized animals were fully protected when challenged with wild type toxin. However, a residual lethality was associated with the attenuated TCR-binding mutant. These results, combined with an understanding of the molecular nature of superantigen and receptor interactions, indicate that targeting MHC class II binding by site-directed mutagenesis will produce the most effective vaccine.
X-ray-Computed Tomography Contrast Agents (2012)

ADVERTISEMENT RETURN TO ISSUEPREVReviewNEXTX-ray-Computed Tomography Contrast AgentsHrvoje Lusic and Mark W. Grinstaff*View Author Information Departments of Biomedical Engineering and Chemistry, Metcalf Center for Science and Engineering, Boston University, 590 Commonwealth Avenue, Boston, Massachusetts 02215, United States*E-mail: [email protected]Cite this: Chem. Rev. 2013, 113, 3, 1641–1666Publication Date (Web):December 5, 2012Publication History Received9 September 2011Published online5 December 2012Published inissue 13 March 2013https://pubs.acs.org/doi/10.1021/cr200358shttps://doi.org/10.1021/cr200358sreview-articleACS PublicationsCopyright © 2012 American Chemical SocietyRequest reuse permissionsArticle Views12978Altmetric-Citations773LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose SUBJECTS:Anatomy,Biological imaging,Imaging agents,Metal nanoparticles,Nanoparticles Get e-Alerts
Industry research on the use and effects of levulinic acid: A case study in cigarette additives (2005)

Public health officials and tobacco researchers have raised concerns about the possible contributions of additives to the toxicity of cigarettes. However, little attention has been given to the process whereby additives promote initiation and addiction. Levulinic acid is a known cigarette additive. Review of internal tobacco industry documents indicates that levulinic acid was used to increase nicotine yields while enhancing perceptions of smoothness and mildness. Levulinic acid reduces the pH of cigarette smoke and desensitizes the upper respiratory tract, increasing the potential for cigarette smoke to be inhaled deeper into the lungs. Levulinic acid also may enhance the binding of nicotine to neurons that ordinarily would be unresponsive to nicotine. These findings held particular interest in the internal development of ultralight and so-called reduced-exposure cigarette prototypes. Industry studies found significantly increased peak plasma nicotine levels in smokers of ultralight cigarettes following addition of levulinic acid. Further, internal studies observed changes in mainstream and sidestream smoke composition that may present increased health risks. The use of levulinic acid illustrates the need for regulatory authority over tobacco products as well as better understanding of the role of additives in cigarettes and other tobacco products.
Biomarkers for prostate cancer (2009)

The detection of prostate cancer using a blood test has by many standards changed the face of the disease. Despite this tremendous success, there are limitations attributed to the use of prostate specific antigen (PSA) as a means to screen and detect prostate cancer. PSA, as its name implies, is not specific for prostate cancer and as such is often found elevated in other prostatic diseases/symptoms associated with the aging male. Clearly, more specific marker(s) that could identify which individuals actually have prostate cancer and differentiate them from those without the disease would be of tremendous value. The search for more accurate and clinically useful biomarkers of prostate cancer has been extensive. This has focused on individual markers, as well as groups of markers. Included among these are PSA isoforms, pathological indicators and stains, nucleic acids and others. This article highlights the discovery of PSA as a first blood-based biomarker for prostate cancer detection, as well as other molecular biomarkers and their potential application in detection of the disease.
Dimerization of a chimeric CD4-interferon-alpha receptor reconstitutes the signaling events preceding STAT phosphorylation. (1996)

Interferon-alpha induces the rapid tyrosine phosphorylation of a number of molecules, including the cognate receptors, JAK-family kinases (Jak1 and tyk2), and latent transcription factors (STATs 1 and 2). Here, we describe the use of chimeric molecules composed of the extracellular domain of CD4 fused to the intracellular domain of the interferon-alpha receptor subunit 1 (IFNaR1). Antibody mediated crosslinking dimerizes the transfected chimeras, activates tyk2 and induces a tyk2-dependent tyrosine phosphorylation of the intracellular domain of the chimera. We further define the major site of IFNaR1 phosphorylation, and show that phosphorylation of this site is required for association with STAT2. Finally, we show that homodimerization of IFNaR1 is not sufficient to activate the STATs, suggesting a role for the IFNaR2 subunit and Jak1 in the transduction of the interferon-alpha signal.