gebhart/patrepeval huggingface dataset:
Mass detection sensitivity of piezoelectric cantilevers with a nonpiezoelectric extension (2006)

A piezoelectric cantilever (PEC) is a transverse transducer consisting of a piezoelectric layer, e.g., lead zirconate titanate (PZT), bonded to a nonpiezoelectric layer, e.g., stainless steel, which has a uniform cross section throughout the length. A PEC with a thin nonpiezoelectric extension, on the other hand, has two distinctive sections each with its own thickness and transverse mass-density and elastic-modulus profiles. A piezoelectric cantilever with a nonpiezoelectric extension has been increasingly used as an in situ biosensor that has the advantage of dipping only the nonpiezoelectric extension part in an aqueous solution without electrically insulating the piezoelectric section. In this study, we examined both experimentally and theoretically the effect of the thin nonpiezoelectric extension, in particular, its length ratio to the piezoelectric part on the vibration wave form and mass detection sensitivity of a PEC. We showed that the nonpiezoelectric extension caused substantial distortion to the vibration wave form. Due to the wave form distortion, the mass detection sensitivity of a PEC with a nonpiezoelectric extension can be higher than that of a PEC of the same length without a nonpiezoelectric extension. Using PECs consisting of a 0.25mm thick PZT layer and a 0.07mm thick stainless steel of various lengths, l1, and a 0.07mm thick nonpiezoelectric stainless steel extension of various lengths, l2, we showed that for any l1, the maximum mass detection sensitivities of first, second, and third modes occurred at l2∕l1=0.6, 0.28, and 0.16 and the maximum values were, respectively, 1.42, 3.9, and 6.7 times the mass detection sensitivity of a PEC of the same l1 without a nonpiezoelectric extension.
Porcine oocyte activation induced by a cytosolic sperm factor (2000)

It is not known how the fertilizing sperm elicits the release of Ca2+ from the oocyte's intracellular stores. We investigated whether a crude extract isolated from boar sperm could induce the Ca2+ release and trigger subsequent early and late activation events upon injection into matured porcine oocytes. The sperm extract induced an immediate rise in the intracellular free Ca2+ concentration in all oocytes tested, which was followed by repetitive Ca2+ transients in 11 out of 14 oocytes. Heat or trypsin treatment of the extract totally abolished the Ca2+ releasing activity of the sperm factor. The injected oocytes showed cortical granule exocytosis, they resumed meiosis and entered first interphase: pronuclei were formed in 89.2% (132/148) of the cases. Pronuclear formation was accompanied by the appearance of a new 22 kDa protein as normally seen at fertilization. Of the successfully injected oocytes 51.7% (105/203) cleaved and 2.0% (4/203) developed to the blastocyst stage after being cultured for 7 days in NCSU 23 medium. Injection of the carrier medium could not trigger these changes. The results indicate that the sperm might activate porcine oocytes by introducing a soluble factor into the oocyte's cytoplasm after gamete fusion. Mol. Reprod. Dev. 57:290–295, 2000. © 2000 Wiley-Liss, Inc.
Elevated serum and bronchoalveolar lavage fluid levels of interleukin 8 and granulocyte colony-stimulating factor associated with the acute chest syndrome in patients with sickle cell disease (2000)

The role of cytokines in the development of acute chest syndrome (ACS) in patients with sickle cell disease (SCD) was studied. Serum interleukin 8 (IL-8) levels were elevated in 14 episodes and undetectable in six out of 20 episodes of ACS in 19 patients with SCD. In contrast, IL-8 levels were undetectable in the sera of 29 control patients with SCD studied during routine clinic visits or hospitalization for vaso-occlusive crises. The differences in mean IL-8 levels and the proportion of patients with detectable levels between the two groups were highly significant (P < 0.0001 and 0.04 respectively). The mean IL-8 level in bronchial fluid samples from children with ACS was also significantly higher than that in sickle cell patients undergoing elective surgery (5500 +/- 1400 pg/ml vs. 1900 +/- 470 pg/ml, P = 0.03). Granulocyte colony-stimulating factor (G-CSF) (2000 +/- 1700 pg/ml) was present in five out of six samples of bronchial fluid, but not serum, from children with ACS. All but one of the patients with ACS studied were negative for the Duffy red cell antigen, which is a receptor that binds and inactivates IL-8 and other chemokines. These findings suggest that IL-8 and G-CSF may play a role in the development of the ACS and the complications associated with it.
Mouse model recapitulating human Fcγ receptor structural and functional diversity (2012)

The in vivo biological activities of IgG antibodies result from their bifunctional nature, in which antigen recognition by the Fab is coupled to the effector and immunomodulatory diversity found in the Fc domain. This diversity, resulting from both amino acid and glycan heterogeneity, is translated into cellular responses through Fcγ receptors (FcγRs), a structurally and functionally diverse family of cell surface receptors found throughout the immune system. Although many of the overall features of this system are maintained throughout mammalian evolution, species diversity has precluded direct analysis of human antibodies in animal species, and, thus, detailed investigations into the unique features of the human IgG antibodies and their FcγRs have been limited. We now report the development of a mouse model in which all murine FcγRs have been deleted and human FcγRs, encoded as transgenes, have been inserted into the mouse genome resulting in recapitulation of the unique profile of human FcγR expression. These human FcγRs are shown to function to mediate the immunomodulatory, inflammatory, and cytotoxic activities of human IgG antibodies and Fc engineered variants and provide a platform for the detailed mechanistic analysis of therapeutic and pathogenic IgG antibodies.
Highly Immunogenic and Totally Synthetic Lipopeptides as Self-Adjuvanting Immunocontraceptive Vaccines (2002)

In this study, we describe the synthesis of various lipopeptides based on the sequence of luteinizing hormone-releasing hormone (LHRH) and report on their abilities to induce Abs against this "self" hormone when inoculated into mice in the absence of additional adjuvant. The peptides consisted of a colinear CD4(+) T helper cell epitope from the L chain of influenza virus hemagglutinin and LHRH, which has B cell epitopes but no T cell epitopes present in its sequence. Lipids were attached either at the N terminus or between the T cell epitope and LHRH, in the approximate center of the peptide. The lipopeptide constructs displayed different solubilities and immunological properties that depended not only on the lipid content but also on the position of attachment of the lipids. Some of these constructs were highly immunogenic, inducing high titers of Ab, which were capable of efficiently sterilizing female mice when administered in saline by s.c. or intranasal routes. The most effective vaccines were highly soluble, contained the dipalmitoyl-S-glyceryl cysteine moiety, and had this lipid attached at the center of the molecule. The relative ability of the lipopeptides to induce an Ab response in the absence of external adjuvant was reflected by their ability to up-regulate the surface expression of MHC class II molecules on immature dendritic cells. These results demonstrate that the composition and position within peptide vaccines of self-adjuvanting lipid groups can influence the ability to induce the maturation of dendritic cells and, in turn, the magnitude of the resulting Ab response.
Thematic review series: The Pathogenesis of Atherosclerosis. Toward a biological network for atherosclerosis (2004)

The goal of systems biology is to define all of the elements present in a given system and to create an interaction network between these components so that the behavior of the system, as a whole and in parts, can be explained under specified conditions. The elements constituting the network that influences the development of atherosclerosis could be genes, pathways, transcript levels, proteins, or physiologic traits. In this review, we discuss how the integration of genetics and technologies such as transcriptomics and proteomics, combined with mathematical modeling, may lead to an understanding of such networks.
A Randomized Trial of Early Versus Standard Inhaled Nitric Oxide Therapy in Term and Near-Term Newborn Infants With Hypoxic Respiratory Failure (2004)

iNO improves oxygenation but does not reduce the incidence of ECMO/mortality when initiated at an OI of 15 to 25 compared with initiation at >25 in term and near-term neonates with respiratory failure.
Improving the performance of conjugated polymer-based devices by control of interchain interactions and polymer film morphology (2000)

Interchain interactions in conjugated polymer films promote good carrier transport but also reduce the luminescence quantum yield, leading to a fundamental trade-off in optimizing film morphology for device performance. We present two methods to improve the efficiency of light-emitting diodes (LEDs) based on poly(2-methoxy-5-(2′-ethylhexyloxy)-1,4-phenylenevinylene) (MEH-PPV) by altering film morphology without changing device architecture. First, “trilayer” LEDs, which use a central MEH-PPV layer with reduced interchain interactions between layers of highly aggregated MEH-PPV near the electrodes, have a higher efficiency than single-layer devices. Second, device efficiency can be improved by annealing MEH-PPV films, so that the reduced emission upon increasing interchain interactions is overcome by more balanced charge injection.
BID, BIM, and PUMA Are Essential for Activation of the BAX- and BAK-Dependent Cell Death Program (2010)

Although the proteins BAX and BAK are required for initiation of apoptosis at the mitochondria, how BAX and BAK are activated remains unsettled. We provide in vivo evidence demonstrating an essential role of the proteins BID, BIM, and PUMA in activating BAX and BAK. Bid, Bim, and Puma triple-knockout mice showed the same developmental defects that are associated with deficiency of Bax and Bak, including persistent interdigital webs and imperforate vaginas. Genetic deletion of Bid, Bim, and Puma prevented the homo-oligomerization of BAX and BAK, and thereby cytochrome c-mediated activation of caspases in response to diverse death signals in neurons and T lymphocytes, despite the presence of other BH3-only molecules. Thus, many forms of apoptosis require direct activation of BAX and BAK at the mitochondria by a member of the BID, BIM, or PUMA family of proteins.
Abstract 5655: Inhibition of CCR2 potentiates checkpoint inhibitor immunotherapy in murine model of pancreatic cancer (2017)

Abstract Pancreatic cancer is an aggressive malignancy with a 5 year survival rate of less than five percent. The predominant immune cells infiltrating the tumor microenvironment are monocytes/macrophages, which are reported to support tumor growth by suppressing host immune responses to the tumor. Recruitment of monocytes to various tissues, including tumors, is dependent upon activation of the chemokine receptor CCR2 by one or more of the chemokines CCL2, CCL8 and CCL13. In preclinical and clinical studies, inhibition of CCR2 in pancreatic cancer has shown to decrease tumor progression by blocking recruitment and accumulation of monocytes/macrophages in the tumor microenvironment. Analysis of human pancreatic tumors revealed elevation of both CCL2 and CSF1, which recruit monocytes, as well as the monocyte marker CD14, in advanced pancreatic cancers. Current immunotherapy using checkpoint inhibitors are effective in some tumors, but lack efficacy in immune insensitive cancers, including pancreatic cancer. Here, we report that the inhibition of CCR2 using a small molecule antagonist potentiates anti-PD-1 immunotherapy in a syngeneic, orthotropic mouse model of pancreatic cancer. Our data reveal that blocking CCR2 decreases tumor burden by blocking monocyte infiltration and creating a microenvironment more favorable for CD8 T cells activity, and provide a mechanistic rationale for investigating the combination of a CCR2 antagonist and an immune checkpoint inhibitor in pancreatic cancer. Citation Format: Christine Janson, Heiyoun Jung, Linda Ertl, Shirley Liu, Ton Dang, Yibin Zeng, Antoni Krasinski, Jeff McMahon, Penglie Zhang, Israel Charo, Rajinder Singh, Thomas J. Schall. Inhibition of CCR2 potentiates checkpoint inhibitor immunotherapy in murine model of pancreatic cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017; 2017 Apr 1-5; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2017;77(13 Suppl):Abstract nr 5655. doi:10.1158/1538-7445.AM2017-5655
Mapping Large Regions of Diblock Copolymer Phase Space by Selective Chemical Modification (2003)

A series of 4,1-polyisoprene-b-1,2-polybutadiene diblock copolymers of differing molecular weights and compositions were prepared by anionic polymerization. The polybutadiene blocks were selectively hydrogenated to poly(ethylethylene) using a homogeneous ruthenium catalyst. The double bonds in the polyisoprene blocks were subsequently modified to varying extents by the addition of difluorocarbene. The precursor polyisoprene−poly(ethylethylene) materials were disordered, but upon difluorocarbene (CF2) addition the effective degree of segregation in these materials increased markedly. Small-angle X-ray scattering was used to characterize the ordered state morphologies and domains spacings. Effective interaction parameters (χeff) were extracted from the temperature- and composition-dependent domain spacings, and these in turn were used to place the various samples on an experimental segregation vs composition phase map. The interaction parameter between poly(ethylethylene) and polyisoprene increases by a factor of 370 upon complete CF2 modification. This large enhancement enables examination of a much wider range of segregation strength than is accessible by varying temperature. A notable feature of these results is that the gyroid phase appears to be stable into the strong segregation regime, in contrast to expectations based on self-consistent-field theory.
Precise Synthesis of Molecularly Defined Oligomers and Polymers by Orthogonal Iterative Divergent/Convergent Approaches (2010)

The synthesis of perfectly defined (macro)molecules has been a constant challenge for polymer and organic chemists. This paper highlights the main applications of the iterative divergent/convergent approach for the synthesis of discrete mass oligomers and polymers. We will discuss the orthogonal deprotection and coupling strategies involved in this powerful strategy where chain length doubles at each iteration and which has been applied to the synthesis of conjugated rigid rods as well as amorphous and crystalline oligomers and polymers. The synthesis of perfectly defined oligomers in respect to emerging highly efficient and orthogonal chemistries will also be highlighted.
Cathodes Properties of Phospho-olivine for Lithium Secondary Batteries (2000)

Four types of orthorhombic olivine LiMPO_4 (M:Co, Fe, Ni, Mn) were investigated as high voltage cathode active materials for lithium secondary batteries. LiCoPO_4 exhibited the highest 4.8V discharge plateau of 100mAh/g vs. Li/Li^+ after initial charging to 5.1V and its energy density was comparable to that of layeredrocksalt LiCoO_2 (120mAh/g×4V=480mWh/g). In contrast, the open circuit voltage profile of LiFePO_4 was 160mAh/g on the 3V plateau. TG-DSC measurements showed that the thermal stability of charged Li_&lt;1-x&gt;CoPO_4 is better than that of fully-charged Li_&lt;1-x&gt;CoO_2. The chemical state of Co in LiCoPO_4 was also analyzed using HRXRF.
Chronic pain-related syndrome in rats after ischemic spinal cord lesion: a possible animal model for pain in patients with spinal cord injury (1992)

We examined a pain-related syndrome, which includes mechanical allodynia and autotomy, in rats after ischemic spinal cord injury photochemically induced by laser irradiation for 5-20 min. This procedure results in an acute allodynia-like phenomenon which lasts for several days and is possibly related to dysfunction of the GABAB system in the spinal cord. In some animals this is followed by a chronic allodynia-like symptom with an onset varying between 1 week and 1.5 months after injury, expressed as a clearly painful reaction to light pressure applied to a skin area at or near the dermatome of the injured spinal segments. In the majority of rats the allodynia persists over several months, in some cases accompanied by autotomy of the hind paws. Pharmacological studies indicated that the allodynia in the majority of rats could be relieved by systemic tocainide (75 mg/kg). Morphine was only effective at a sedative dose (5 mg/kg). The allodynia was not relieved by baclofen, muscimol, clonidine or carbamazepine. Low-dose systemic pentobarbital (5 mg/kg) had a slight beneficial effect. Guanethidine (20 mg/kg, s.c.) did not abolish the allodynia in most of the rats. Histological examination revealed massive damage in the spinal cord. The dorsal roots of the irradiated segments were also injured. No morphological abnormalities were seen in the dorsal root ganglia. The mechanism that may account for this chronic pain-related syndrome in spinally injured rats probably involves abnormalities in the central nervous system. The allodynia seen in chronic spinally injured rats was similar to some painful symptoms in patients after spinal cord injury or stroke. It is suggested that the chronic allodynia-like phenomenon may represent an animal model for studying the mechanisms of chronic central pain.
Electrostatic Layer-by-Layer Nanoassembly on Biological Microtemplates:  Platelets (2002)

Platelets were coated with 78-nm silica nanoparticles, 45-nm fluorescent nanospheres, or bovine immunoglobulin G (IgG) through layer-by-layer assembly by alternate adsorption with oppositely charged linear polyions. Sequential deposition on platelet surfaces of cationic poly(dimethyldiallylammonium chloride) and anionic poly(styrene sulfonate) was followed by adsorption of nanoparticles or immunoglobulins. Nano-organized shells of platelets were demonstrated by transmission electron microscopy and fluorescence microscope images. Bovine IgG was assembled on platelets, as verified with anti-bovine IgG-FITC labeling. Localized targeting of anti-IgG shelled platelets was also demonstrated. An ability to coat blood cells with nano-organized shells can have applications in cardiovascular research and targeted drug delivery.
Diagnostic potential of baculovirus-expressed rubella virus envelope proteins (1991)

The envelope glycoproteins E1 and E2 of rubella virus were abundantly expressed in Spodoptera frugiperda Sf9 insect cells by using a baculovirus expression vector. The recombinant protein products were purified by immunoaffinity chromatography and characterized by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, immunoblotting, and enzyme immunoassay (EIA). The purified recombinant antigen consisted of the envelope polypeptides, corresponding to the viral E1 and E2 proteins, and a polyprotein precursor (molecular mass, 90 to 95 kDa). The antigen was reactive with human convalescent-phase sera in immunoblot analysis, and the reactivity correlated well (r = 0.861) with that of a whole-virus antigen when tested by EIA by using a total of 106 rubella virus immunoglobulin G-positive and -negative serum specimens. When the sera from patients with recent rubella virus infection were tested with the recombinant glycoproteins by EIA, the correlation was not as close (r = 0.690). However, all of the 26 serum specimens were reactive with the recombinant antigen. The results demonstrate that these bioengineered antigens have a potential for use in routine diagnostic assays of rubella virus immunity and recent infection.
Efficacy and safety of bendamustine for the treatment of patients with recurring Hodgkin lymphoma (2012)

The management of patients with Hodgkin lymphoma (HL) recurring after stem cell transplantation (SCT) and multiply relapsed disease remains challenging. We report on 41 such patients who received bendamustine hydrochloride, a bifunctional mechlorethamine derivative mechanistically unrelated to traditional alkylators, after a median of four prior chemotherapy lines, including SCT in 85% of cases. Bendamustine was given at doses of 90-120 mg/m(2) every 21 or 28 d. At first assessment (2-4 cycles), the overall response rate (ORR) was 78% with 12 (29%) complete (CR) and 20 (49%) partial responses (PR). Upon treatment prolongation to 6-8 courses, 40% of PRs progressed, yielding a final ORR of 58% with 31% of CRs. Eight patients (two CRs, six PRs) were subsequently allotransplanted. Median progression-free and overall survival exceeded 11 and 21 months respectively; complete responders displayed a median disease-free survival above 9 months with a relapse rate of only 30%. Outcomes were independent of disease chemosensitivity, previous transplant and bendamustine dose-intensity. No life-threatening or unexpected adverse events occurred. Within the limits of a retrospective analysis and schedule heterogeneity, these results appear very encouraging and prompt prospective trials to confirm bendamustine as a valuable option in the palliative setting and in cytoreductive strategies before allotransplantation.
Silicon nanoparticles formation by means of laser ablation in liquid media (2010)

The possibility to produce silicon nanoparticles by the method of the pulse laser ablation of monocrystaline silicon targets in the water, glycerol and liquid nitrogen have been shown. Studies by the atomic-force microscopy and Raman scattering methods revealed the nanoparticles have a crystalline structure and their mean size depends on the buffer liquid composition.
Design of Potent Inhibitors for Human Brain Memapsin 2 (β-Secretase) (2000)

ADVERTISEMENT RETURN TO ISSUEPREVCommunicationNEXTDesign of Potent Inhibitors for Human Brain Memapsin 2 (β-Secretase)Arun K. Ghosh, Dongwoo Shin, , Gerald Koelsch, Xinli Lin, Jacques Ermolieff, and Jordan TangView Author Information Department of Chemistry, University of Illinois at Chicago, Chicago, Illinois Protein Studies Program, Oklahoma Medical Research Foundation and Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104 Cite this: J. Am. Chem. Soc. 2000, 122, 14, 3522–3523Publication Date (Web):March 23, 2000Publication History Received27 January 2000Published online23 March 2000Published inissue 1 April 2000https://doi.org/10.1021/ja000300gCopyright © 2000 American Chemical SocietyRIGHTS & PERMISSIONSArticle Views1717Altmetric-Citations180LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit Read OnlinePDF (38 KB) Get e-AlertsSupporting Info (1)»Supporting Information Supporting Information SUBJECTS:Inhibition,Inhibitors,Lactones,Lithium,Peptides and proteins Get e-Alerts