gebhart/patrepeval huggingface dataset:
Induction of Tissue Factor Expression in Whole Blood: Lack of Evidence for the Presence of Tissue Factor Expression in Granulocytes (2000)

The present investigation was undertaken to explore the effect of platelets, tumor necrosis factor (TNF) and phorbel ester [phorbol 12-myristate 13-acetate (PMA)] on lipopolysaccharide (LPS)-induced tissue factor (TF) activity and TF antigen by using Western blot and ELISA-techniques. LPS was found to induce correlating levels of TF antigen and the activity in monocytes. TNF and PMA, when used alone, failed to induce TF activity and the antigen in monocytes, but enhanced the LPS-induced TF activity and the antigen by 2 to 3-fold. Addition of platelet rich plasma to isolated blood cells enhanced the LPS-induced TF activity but not the antigen levels in monocytes. In contrast to whole platelets, platelet lysates enhanced both LPS-induced TF activity and the antigen. Granulocytes isolated from heparinized plasma incubated for 2 or 24 h with LPS alone or together with PMA, failed to generate TF antigen or the activity. Although granulocyte preparations isolated from whole blood that was incubated for 24 h with LPS and PMA apparently possessed a significant amount of TF activity and the antigen, this could be accounted for by trace levels of contaminating monocytes. Upregulation of LPS-induced TF activity but not the antigen by platelets in the presence of granulocytes suggests that the increased TF activity could be the result of PS enrichment of monocytes by fusion or platelets with activated monocytes.
Synthesis of CuInSe<sub>2</sub> and CuInGaSe<sub>2</sub> Nanoparticles by Solvothermal Route (2004)

Chalcopyrite CuInSe 2 (CIS) and CuInGaSe 2&lt;/sub(CIGS) nanoparticles were directly synthesized by a solvothemal route in an autoclave with alkylamine as a solvent. The rod-like CIS nanoparticles with widths of 5-10 nm and lengths of 10-30 nm were obtained at 180°C for 36 hour whereas spherical nanoparticles with diameter in the range of 10-80 nm were observed at 200- 250 °C for 36 hour. A morphology change from spherical to rod-like CIS nanoparticles was observed at 190 °C as reaction time increased from 36 to 60 hour. The formation of the rod-like nanoparticles in diethylamine, without double N-chelation, was explained by the SLS (Solution- Liquid-Solid) mechanism. Spherical CIGS nanoparticles with diameter in the range of 30-80 nm were obtained in ethylenediamine at 280 °C for 14 hour. The products were characterized by x-ray diffraction (XRD), transmission electron microscopy (TEM) and high-resolution scanning electron microscopy (HRSEM).
Understanding Ribonucleotide Reductase Inactivation by Gemcitabine (2007)

This paper focuses on the inhibition of ribonucleotide reductase (RNR) by gemcitabine, 2',2'-difluoro-2'-deoxycytidine (dFdC), a deoxycytidine analogue that is a very active drug against solid tumors and is currently commercialized as gemzar. RNR inactivation is reductant-dependent and occurs in a very different way from that of other known substrate analogues. In the presence of reductants monomer R1 of RNR is inhibited, whereas in the absence of reductants the radical is lost and monomer R2 is inhibited. As inside the cell reductants are available, it is likely that R1 inactivation is the most favorable mechanism responsible for drug cytotoxicity. This inhibition pathway has been unknown to date, but we have conducted a theoretical study that has led us to the first proposal of a mechanism for RNR inhibition by dFdC in the presence of reductants.
Selective Inhibitors of the Proteasome-dependent and Vacuolar Pathways of Protein Degradation in Saccharomyces cerevisiae (1996)

We have studied whether various agents that inhibit purified yeast and mammalian 26 S proteasome can suppress the breakdown of different classes of proteins in Saccharomyces cerevisiae. The degradation of short-lived proteins was inhibited reversibly by peptide aldehyde inhibitors of proteasomes, carbobenzoxyl-leucinyl-leucinyl-leucinal (MG132) and carbobenzoxyl-leucinyl-leucinyl-norvalinal (MG115), in a yeast mutant with enhanced permeability, but not in wild-type strains. Lactacystin, an irreversible proteasome inhibitor, had no effect, but the beta-lactone derivative of lactacystin, which directly reacts with proteasomes, inhibited the degradation of short-lived proteins. These inhibitors also blocked the rapid ubiquitin-dependent breakdown of a beta-galactosidase fusion protein and caused accumulation of enzymatically active molecules in cells. The degradation of the bulk of cell proteins, which are long-lived molecules, was not blocked by proteasome inhibitors, but could be blocked by phenylmethylsulfonyl fluoride. This agent, which inhibits multiple vacuolar proteases, did not affect the proteasome or breakdown of short-lived proteins. These two classes of inhibitors can thus be used to distinguish the cytosolic and vacuolar proteolytic pathways and to increase the cellular content of short-lived proteins.
Full-length complementary DNA of hepatitis C virus genome from an infectious blood sample† (1998)

We constructed a full-length complementary DNA (cDNA) clone of hepatitis C virus (HCV) from a blood sample of an HCV carrier. The blood from the carrier was eventually transfused to a patient who later developed typical posttransfusion hepatitis C. It was also shown to be infectious to chimpanzees. We obtained 12 overlapping cDNA fragments altogether, covering the entire HCV genome. By subcloning and sequencing, clones considered to constitute the major population were selected. We could also detect 98 base pairs of extra sequences at the 3' end of the genome. After confirming the overlapping sequences, we combined the fragments to make a full-length cDNA. The HCV population in the donor was heterogeneous, as determined by their nucleotide sequences of the hypervariable region in envelope protein, but a few virus clones were selected in the recipient after transmission. The similar convergence of the virus population was previously observed when the same blood sample was injected into a chimpanzee. Interestingly, virus clones isolated during the acute phase in the recipient and the chimpanzee had sequences in the hypervariable region identical to that of the full-length cDNA clone. The full-length cDNA clone of HCV constructed in this study may originate from infectious virus clones.
Purification and N‐terminal amino acid sequence of the human T lymphocyte CD2 (T11) surface antigen (1987)

CD2 (the sheep erythrocyte receptor) is a surface antigen of human T lymphocytes. A role for CD2 in T cell function has been implicated from the observation that antibodies against CD2 are capable of transmitting both positive and negative signals for cell growth. Biochemically, the molecule has been identified as a broad band on sodium dodecyl sulfate (SDS)-polyacrylamide gels of about 50-58 kDa. This communication demonstrates that CD2 contains N-linked carbohydrate as endo-beta-N-acetylglucosaminidase F digestion reduced its apparent mol. mass to a compact band of 40 kDa. CD2 was purified from the T leukemia cell line J6 by immunoaffinity chromatography and preparative SDS-polyacrylamide gel electrophoresis (PAGE). Four bands of 52, 54, 56 and 58 kDa could be distinguished in the immunoaffinity-purified protein which formed a broad zone on SDS-PAGE extending from about 45 to 58 kDa. Preparative SDS-PAGE yielded a product suitable for determining the N-terminal amino acid sequence. Assignments were made for the first 26 (excluding the 23rd) residues and the sequence identified a novel polypeptide.
Effects of hypoxia on platelet activation in pilots. (1994)

In order to evaluate the effect of hypoxia on platelet activation, 53 pilots were chosen for this study. Thirty were selected as the hypoxic group, and the other 23 as a control group. The plasma concentration of thromboxane B2(TXB2), 6-keto-prostaglandin f1 alpha (6-keto-PGF1 alpha), beta-thrombo-globulin (BTG) and platelet factor 4 (PF4) were measured during altitude chamber tests. After staying at 5000 m for 15 min, the plasma level of TXB2, BTG and PF4 increased significantly over pre-test levels (p < 0.01), but 6-keto-PGF1 alpha had no distinct change (p > 0.05). These changes indicate that moderate acute hypoxia causes increases in platelet activation, but has less effects on the endothelial cells.
Inferring articulation and recognizing gestures from acoustics with a neural network trained on x-ray microbeam data (1992)

This paper describes a method for inferring articulatory parameters from acoustics with a neural network trained on paired acoustic and articulatory data. An x-ray microbeam recorded the vertical movements of the lower lip, tongue tip, and tongue dorsum of three speakers saying the English stop consonants in repeated Ce syllables. A neural network was then trained to map from simultaneously recorded acoustic data to the articulatory data. To evaluate learning, acoustics from the training set were passed through the neural network. To evaluate generalization, acoustics from speakers or consonants excluded from the training set were passed through the network. The articulatory trajectories thus inferred were a good fit to the actual movements in both the learning and generalization conditions, as judged by root-mean-square error and correlation. Inferred trajectories were also matched to templates of lower lip, tongue tip, and tongue dorsum release gestures extracted from the original data. This technique correctly recognized from 94.4% to 98.9% of all gestures in the learning and cross-speaker generalization conditions, and 75% of gestures underlying consonants excluded from the training set. In addition, greater regularity was observed for movements of articulators that were critical in the formation of each consonant.
Lessons through time in 4D seismic (2007)

Michael Tang, Robert Ross, and Robin Walker of WesternGeco discuss experience with a new proprietary system designed to reduce time-lapse noise by accurately repeating source and receiver positions in relation to 4D vintage surveys.
[The effect of triiodothyronine (T3) and reverse triiodothyronine (rT3) on canine hemorrhagic shock]. (1988)

The euthyroid sick ("low T3") syndrome occurs in circulatory collapse and could influence survival. To evaluate the role of T3 and rT3 in shock, 36 mongrel dogs were subjected to hemorrhagic shock. In 13 dogs 15 micrograms/kg of T3 was given after 60 min of hypotension and 15 micrograms/kg of rT3 was administered IV 30 min before hemorrhage in 10 dogs. An equal volume of saline was injected in 13 dogs for control study. These dogs were bled rapidly into a reservoir to a mean arterial pressure (MAP) of 40 mmHg. After 60 min of hypotension the reservoir line was clamped for 30 min. The shed blood was then reinfused over 30 min. T3 administration caused significant increases during the clamped period in cardiac output, stroke volume, MAP, right and left ventricular stroke work and systemic vascular resistance, with a decrease in pulmonary vascular resistance (PVR). In the group receiving rT3 the only significant hemodynamic-metabolic differences were PVR and mean arterial pH. In the control group, 6 of 13 dogs died, whereas 9 of 10 dogs given rT3 died (p less than 0.03) and only one of 13 T3 dogs died (p less than 0.05). This study strongly suggests that T3 improves survival by acting on cardiovascular receptors or via the hypothalamic-pituitary-thyroid axis and that exogeneous rT3 is detrimental during the stress of shock and may play a biologically causative role in the sick euthyroid syndrome.
[Effects of wuzi yanzong pills on lipid in rats with alcohol-induced liver injury]. (1994)

Experiments showed that in the rat model of alcohol-induced liver injury, a dosage of the pills (1-2g/kg, ig) could increase the cholesterol level, lower the triglyceride level, and improve the fatty degeneration and necrosis of liver (P < 0.05-0.01). The results suggest that the important mechanism of the pills in protecting and treating alcoholic fatty liver, lies in the regulation of metabolism of the lipid, especially of the triglyceride.
“Global” cell replacement is feasible via neural stem cell transplantation: Evidence from the dysmyelinated shiverer mouse brain (1999)

Many diseases of the central nervous system (CNS), particularly those of genetic, metabolic, or infectious/inflammatory etiology, are characterized by "global" neural degeneration or dysfunction. Therapy might require widespread neural cell replacement, a challenge not regarded conventionally as amenable to neural transplantation. Mouse mutants characterized by CNS-wide white matter disease provide ideal models for testing the hypothesis that neural stem cell transplantation might compensate for defective neural cell types in neuropathologies requiring cell replacement throughout the brain. The oligodendrocytes of the dysmyelinated shiverer (shi) mouse are "globally" dysfunctional because they lack myelin basic protein (MBP) essential for effective myelination. Therapy, therefore, requires widespread replacement with MBP-expressing oligodendrocytes. Clonal neural stem cells transplanted at birth-using a simple intracerebroventricular implantation technique-resulted in widespread engraftment throughout the shi brain with repletion of MBP. Accordingly, of the many donor cells that differentiated into oligodendroglia-there appeared to be a shift in the fate of these multipotent cells toward an oligodendroglial fate-a subgroup myelinated up to 52% (mean = approximately 40%) of host neuronal processes with better compacted myelin of a thickness and periodicity more closely approximating normal. A number of recipient animals evinced decrement in their symptomatic tremor. Therefore, "global" neural cell replacement seems feasible for some CNS pathologies if cells with stem-like features are used.
Identification of phosphotyrosine residues in peptides by high performance liquid chromatography on-line derivative spectroscopy. (1992)

A method has been developed for the detection of phosphotyrosine residues in peptides based on reversed phase-high performance liquid chromatography (RP-HPLC) on-line spectral analysis. It has been found that tyrosine-containing peptides show a hypsochromic shift of the aromatic absorbance maximum when the tyrosine is phosphorylated. Subsequent second-order derivative spectra likewise reveal a hypsochromic shift of the corresponding minima of the phosphotyrosine residues compared to the unmodified tyrosine. This method allows mapping of tyrosine phosphorylation sites in proteins after cleavage into smaller peptides and separation and on-line spectral analysis of the latter by RP-HPLC. It furthermore provides a useful way for the characterization of synthetic phosphotyrosine-containing peptides.
Rapid Analysis of DNA Methylation Using New Restriction Enzyme Sites Created by Bisulfite Modification (1996)

Bisulfite converts non-methylated cytosine in DNA to uracil leaving 5-methylcytosine unaltered. Here, predicted changes in restriction enzyme sites following reaction of genomic DNA with bisulfite and amplification of the product by the polymerase chain reaction (PCR) were used to assess the methylation of CpG sites. This procedure differs from conventional DNA methylation analysis by methylation-sensitive restriction enzymes because it does not rely on an absence of cleavage to detect methylated sites, the two strands of DNA produce different restriction enzyme sites and may be differentially analyzed, and closely related sequences may be separately analyzed by using specific PCR primers.
Ionic equilibrium: solubility and pH calculations (1998)

Basic Principles. Activity Coefficients and pH. Strong Acids and Bases. Monoprotic Acids and Bases. Polyprotic Acids and Bases. Solubility. Complex Formation. Organic Complexes. Oxidation--Reduction Equilibria. Carbon Dioxide. pH in Brines. Automated Computation Methods (by David R. Cogley). Index.
LY354740, an mGlu2/3 Receptor Agonist as a Novel Approach to Treat Anxiety/Stress (2003)

Metabotropic glutamate (mGlu) receptors, which include mGlu1-8 receptors, are a heterogeneous family of G-protein coupled receptors (GPCRs) that function to modulate neuronal excitation and plasticity via pre-synaptic, post-synaptic and glial mechanisms. Agonists for group II mGlu receptors (mGlu2 and mGlu3), such as LY354740, have been shown to suppress enhanced glutamatergic excitations in brain synapses known to be involved in the expression of fear/anxiety in animals and humans. Systemic administration of LY354740 increases open-arm time in the elevated plus maze in mice under conditions of moderate to severe stress, blocks the expression but not development of fear-potentiated startle in rats, prevents lactate-induced panic-like responses in panic-prone rats, and attenuates certain physiological, behavioral, and neurochemical consequences of acute stress in rodents. In these preclinical models, LY354740 does not produce the side-effects (e.g. sedation) that are associated with other anxiolytic agents such as benzodiazepines. Early clinical results with LY354740 have demonstrated safety and efficacy in a human anxiety model (panic provocation induced by CO2 challenge). Collectively, these data indicate mGlu2/3 receptor agonists such as LY354740 represent a promising new approach for treatment of anxiety and stress-related disorders in humans.
Health promotion as empowerment: suggestions for changing the balance of power. (1998)

Healthcare in the 1990s demands an actively involved patient. This article explores oppression theory and its relevance to primary care practice. Specifically, it analyzes the impact of the domination of the medical model on patients and nurses and suggests a process to empower both through "liberating education:" Nurse practitioners (NPs) are advised to review issues of control and power in their relationships with patients in order to empower them and help them find their voice. To do this, NPs need to analyze and explore their own experiences with powerlessness and how these impact their practice. Implications for the education of future NPs are also discussed.
Culture of blastomeres from in vitro‐matured, fertilized, and cultured bovine embryos (1997)

A culture system was devised to study the differentiation of bovine blastomeres. Blastomeres (2–13 per well) from embryos produced by in vitro maturation, fertilization, and culture of oocytes obtained from slaughterhouse ovaries were cultured for 10 days in 24-well culture plates on feeder layers in blastomere culture medium (BCM: equal parts tissue culture medium 199 and low-glucose Dulbecco's modified Eagle's medium with 10% fetal bovine serum). Ovine embryonic fibroblasts and STO cells were superior to bovine and mouse embryonic fibroblasts as mitotically inactivated feeder cells. Over five studies in which four blastomeres from an embryo were added to each culture well, an average of one colony per well formed from the blastomeres. The colonies continued to grow throughout the culture period, and most colonies resembled trophectoderm in their cellular characteristics, although some cultures contained a mixture of trophectoderm and endoderm. When the number of blastomeres cultured in each well was varied from 2–8, the number of colonies formed was proportional to the number of blastomeres added. Blastomeres from day 5 and day 6 embryos produced fewer colonies than did those from day 4 embryos, perhaps as a result of differentiation and tighter blastomere adhesion resulting in damage during their separation. The absence of serum did not alter the number of colonies formed. A number of growth factors, including LIF, OM, PDGFα, and FGF4, had no effect on the number of colonies, the size of colonies, or their alkaline phosphatase staining score beyond that provided by the feeder layer or serum when present. Blastomeres did not form colonies in the absence of feeder layers. Mol. Reprod. Dev. 48:238–245, 1997. © 1997 Wiley-Liss, Inc.
Empirical Similarity (2006)

An agent is asked to assess a real-valued variable Yp based on certain characteristics Xp = (Xp1, …, Xpm), and on a database consisting of Xi1, … Xim, Yi) for i = 1, …, n. A possible approach to combine past observations of X and Y with the current values of X to generate an assessment of Y is similarity-weighted averaging. It suggests that the predicted value of Y, Ȳps, be the weighted average of all previously observed values Yi, where the weight of Yi for every i = 1, …, n, is the similarity between the vector Xp1, …, Xpm, associated with Yp, and the previously observed vector, Xi1, …, Xim. We axiomatize this rule. We assume that, given every database, a predictor has a ranking over possible values, and we show that certain reasonable conditions on these rankings imply that they are determined by the proximity to a similarity-weighted average for a certain similarity function. The axiomatization does not suggest a particular similarity function, or even a particular form of this function. We therefore proceed to suggest that the similarity function be estimated from past observations.We develop tools of statistical inference for parametric estimation of the similarity function, for the case of a continuous as well as a discrete variable. Finally, we discuss the relationship of the proposed method to other methods of estimation and prediction.
Filamentous Phage Display in the New Millennium (2005)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTFilamentous Phage Display in the New MillenniumJohn W. Kehoe and Brian K. KayView Author Information Biosciences Division, Argonne National Laboratory, Building 202, Argonne, Illinois 60439 Cite this: Chem. Rev. 2005, 105, 11, 4056–4072Publication Date (Web):October 21, 2005Publication History Received1 April 2005Published online21 October 2005Published inissue 1 November 2005https://doi.org/10.1021/cr000261rCopyright © 2005 American Chemical SocietyRIGHTS & PERMISSIONSArticle Views5621Altmetric-Citations300LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit Read OnlinePDF (437 KB) Get e-AlertsSUBJECTS:Biopolymers,Genetics,Monomers,Peptides and proteins,Viruses Get e-Alerts