gebhart/patrepeval huggingface dataset:
Rodlike Cellulose Microcrystals: Structure, Properties, and Applications (2004)

Abstract Summary: In this article we present some interesting properties of rodlike cellulose microcrystals (so‐called “whiskers”). These microcrystals can be obtained from different cellulose sources such as wood, cotton, or animal origin. When submitted to acid hydrolysis, the cellulose fibers yield stable aqueous suspensions because of the presence of negative charges on the surface of the microcrystallites during the hydrolysis process. The obtained microcrystals are rod‐shaped particles, the dimensions of which depend on the cellulose origin. For instance, the cotton whiskers have typical dimensions varying from 100 to 300 nm in length, L , and 8 to 10 nm in diameter, d , while those of the tunicate whiskers range from 100 nm to few micrometers in length and 10 to 20 nm in diameter. At very low concentrations, these whiskers are randomly suspended in water and form an isotropic phase. When the concentration reaches a critical value, the whiskers spontaneously display ordered phases showing interesting liquid crystal properties (nematic and chiral nematic). The chiral nematic orders can be retained after evaporation of the solvent (generally water), leaving iridescent films. The reflected color can be controlled by changing either the ionic strength or by applying an electric field. These colloidal particles have been investigated using several techniques including small‐angle neutron scattering (SANS), small angle X‐ray scattering, rheology, and more recently dynamic and static light scattering techniques (DLS and SLS) to highlight their static and dynamic behavior. Because of their geometry, important axis ratio ( L / d ), and high crystallinity, these rods have been also extensively used to process nanocomposites based on polymer matrices, to reinforce their mechanical properties. All these properties are discussed in this contribution. Rodlike nanocrystals in aqueous suspension (left, Tunicate, 1 wt.‐%) and film (right), observed between cross‐polarizers. magnified image Rodlike nanocrystals in aqueous suspension (left, Tunicate, 1 wt.‐%) and film (right), observed between cross‐polarizers.
The OpenGL Graphics System: A Specification (2004)

This document describes the OpenGL graphics system: what it is, how it acts, and what is required to implement it. We assume that the reader has at least a rudimentary understanding of computer graphics. This means familiarity with the essentials of computer graphics algorithms as well as familiarity with basic graphics hardware and associated terms.
Periodic breathing and the pathogenesis of occlusive sleep apneas. (1982)

In order to study the relationship between sleep-induced periodic breathing and the development of occlusive sleep apneas, 6 patients with hypersomnia-sleep apnea syndrome were studied during nocturnal sleep before and approximately 1 month after therapeutic tracheostomy. Post-tracheostomy studies were performed in open and closed tracheostomy states. Sleep-induced periodic breathing resembling the pattern of Cheyne-Stokes breathing was observed in all patients before and after tracheostomy, even when tracheostomy was left open. When tracheostomy was closed all patients developed periodic hypopneas with significant oxygen desaturation, and 4 patients developed occlusive apneas at the nadir of the periodic changes. However, apnea and desaturation indexes during closed tracheostomy were significantly lower than their respective pretracheostomy values. These results indicate that sleep-induced periodic breathing, which represents an instability of respiratory control, is primary to the development of occlusive apneas, and the periodically observed is exaggerated by hypoxemia. Comparison of pre- and post-tracheostomy studies indicate a significant improvement in the underlying disorder most likely caused by the elimination of nocturnal hypoxemia and sleep fragmentation.
Coronary physiology (1983)

The major areas of normal coronary physiological research since Berne's 1964 review have been the measurement of ventricular transmural blood flow distribution with microspheres, the adenosine hypothesis of local metabolic control of coronary blood flow, and the autonomic control of coronary blood flow. There is an improved understanding of intramyocardial tissue pressure and extravascular compressive forces on coronary vessels. However, the unexpected finding of zero flow during a prolonged diastole with a coronary artery pressure of 40 mmHg (PZF) is a reminder that the physical forces, including vascular smooth muscle contraction, that determine coronary vascular resistance are incompletely understood. During normal circumstances, the left ventricular subendocardium probably receives more blood flow than the subepicardium does, but the difference is small. When the coronary circulation is compromised by stenosis or aortic valve lesions, the subendocardium is much more vulnerable to underperfusion than is the subepicardium. The coronary vasodilating effect of arterial hypoxia has been confirmed in many studies, but the role of tissue oxygen tension in local metabolic control of coronary blood flow during normoxia is unknown. The coronary vasodilating action of carbon dioxide has received renewed attention, but its role in local control is also unknown. The adenosine hypothesis has passed several critical tests, but despite much research the importance of adenosine in normal coronary regulation is not established. Local metabolic control of coronary blood flow probably involves more than just one factor, but a unified hypothesis has not been put forward. Sympathetic alpha-receptor-mediated coronary vasoconstriction has been demonstrated by nerve stimulation and during a carotid sinus baroreceptor reflex. Sympathetic coronary vasoconstriction is capable of competing with local metabolic control to lower coronary venous oxygen tension under experimental circumstances, but its importance during normal resting conditions is not established. Parasympathetic muscarinic coronary vasodilation has been shown by vagal nerve stimulation, but a role for it during normal blood flow regulation has yet to be demonstrated. There have been elegant descriptive studies of the coronary blood flow response during excitement and exercise, where coronary blood flow increases pari passu with myocardial metabolism; however, there are also data that indicate a concomitant sympathetic vasoconstrictor effect during strenuous exercise. Overall there has been encouraging progress in coronary physiology. Inevitably new knowledge has focused old questions and presented new ones.
Weight Loss and Gender: An Examination of Physician Attitudes (2001)

This study indicates that physicians treat male and female patients differently, with physicians more likely to encourage weight loss and provide referrals for women with a BMI of 25 kg/m(2) than for men with an identical BMI and less likely to encourage weight loss for women than men with a BMI of 32 kg/m(2).
The CD59 antigen is a structural homologue of murine Ly‐6 antigens but lacks interferon inducibility (1990)

A cDNA encoding the human leukocyte antigen CD59 has been isolated from the erythroid cell line K-562 and its identity confirmed through expression in COS cells. Northern blotting reveals three message species of approximately 800, 1400 and 2000 bases in size, which are constitutively expressed in all lymphoid, erythroid, myeloid, and neural cell types tested thus far. Southern blotting of human DNA indicates a pattern consistent with the presence of a single gene, which has been mapped to chromosome 11 by somatic cell hybrids. Also, the finding of a transcriptionally active cross-hybridizing gene in monkey cells suggests conservation of CD59 sequences among primates. Comparison of the CD59 protein sequence with those of the Ly-6E and Ly-6C antigens discloses a similarity in overall structure, including the alignment of abundant cysteine residues, hydrophobic carboxy termini and conservation of amino acids surrounding the proposed phosphatidylinositol-glycan modification site for Ly-6 molecules. Unlike Ly-6, however, CD59 expression does not appear to be inducible with interferons. This, along with its limited homology and different tissue distribution, cast doubt upon the functional equivalence of CD59 and either of the well-characterized mouse Ly-6 proteins.
Telemedicine in critical care (1982)

We introduced telemedicine, i.e., telecommunications for delivery of health services, to alleviate scarcity and maldistribution of critical care services. For 18 months, we used interactive television to provide consultation with university-based critical care physicians for patients in the ICU of a 100-bed hospital. Telemedicine "visits" (1548) were made to 395 patients. Television consultation had greater clinical and educational impact than consultation using the telephone. Equipment was expensive but proved to be reliable and easy to use. Interactive television extended the availability of specialist expertise, but full exploitation of this technology for delivery of critical care services was not achieved. Extensive background research, currently underway at the University of Pittsburgh, is necessary before the next telemedicine demonstration.
In situ detection of human cytomegalovirus immediate-early gene transcripts within cardiac myocytes of patients with HIV-associated cardiomyopathy (1992)

This study is the first to demonstrate the expression of the IE gene of CMV within myocytes from HIV-infected patients with cardiomyopathy, suggesting a non-permissive infection of myocytes without classical intranuclear inclusions. Myocyte infection may be necessary to trigger cellular and humoral-mediated cardiac injury and may be best identified using in situ hybridization techniques.
Antagonistic Effect of Human Alpha-1-Antitrypsin on Excystation of Cryptosporidium parvum Oocysts (1997)

This study evaluated the effects of the human serine protease inhibitor alpha-1-antitrypsin (AAT) on in vitro excystation and infectivity of Cryptosporidium parvum. Excystation was monitored at 37 C in RPMI medium in the presence of 0, 100, 500, or 1,000 micrograms/ml AAT. AAT significantly inhibited (P < 0.05) excystation of bleach-decontaminated oocysts in a concentration-dependent manner at incubation intervals from 15 to 90 min but did not alter the excystation dynamics of unbleached oocysts. Bleach-treated oocysts, suspended in RPMI containing 0, 1, 10, 100, 500, or 1,000 micrograms/ml AAT, were used to inoculate bovine fallopian tube epithelial (BFTE) cell monolayers. Alternately, sporozoites, excysted at 37 degrees C and collected by filtration, were used to inoculate BFTE cells under the same conditions. The mean number of parasites counted in AAT-treated, oocyst-inoculated cells was significantly less (P < 0.01) than control mean values at 24 and 48 hr post-inoculation (PI); longer PI intervals (72-96 hr) exhibited a decreased inhibitory effect. AAT did not inhibit parasite infection when cultures were inoculated with C. parvum sporozoites. The findings of this study show that the anticryptosporidial potential of AAT is primarily associated with an antagonistic effect on oocyst excystation.
Autonomous quantum error correction with superconducting qubits (2017)

In this thesis, we develop several tools in the direction of autonomous Quantum Error Correction (QEC) with superconducting qubits. We design an autonomous QEC scheme based on quantum reservoir engineering, in which transmon qubits are coupled to lossy modes. Through an engineered interaction between these systems, the entropy created by eventual errors is evacuated via the dissipative modes.The second part of this work focus on the recently developed cat codes, through which the logical information is encoded in the large Hilbert space of a harmonic oscillator. We propose a scheme to perform continuous and quantum non-demolition measurements of photon-number parity in a microwave cavity, which corresponds to the error syndrome in the cat code. In our design, we exploit the strongly nonlinear Hamiltonian of a highimpedance Josephson circuit, coupling ahigh-Q cavity storage cavity mode to a low-Q readout one. Last, as a follow up of the above results, we present several continuous and/or autonomous QEC schemes using the cat code. These schemes provide a robust protection against dominant error channels in the presence of multi-photon driven dissipation.
Soft Landing of Complex Molecules on Surfaces (2011)

Soft and reactive landing of mass-selected ions onto surfaces has become a topic of substantial interest due to its promising potential for the highly controlled preparation of materials. For example, there are possible applications in the production of peptide and protein microarrays for use in high-throughput screening, protein separation and conformational enrichment of peptides, redox protein characterization, thin-film production, and the preparation of catalysts through deposition of clusters and organometallic complexes. Soft landing overcomes many of the limitations associated with conventional thin-film production techniques and offers unprecedented selectivity and specificity of preparation of deposited species. This review discusses the fundamental aspects of soft and reactive landing of mass-selected ions on surfaces that pertain to applications of these techniques in biomaterials, molecular electronics, catalysis, and interfacial chemistry.
Granule membrane protein 140 (GMP140) binds to carcinomas and carcinoma-derived cell lines. (1992)

The glycoproteins granule membrane protein 140 (GMP140), endothelial-leukocyte adhesion molecule 1 (ELAM-1), and Leu-8 are members of a family of glycoprotein receptors (selectins or LEC-CAMs) that play an important role in adhesive interactions between circulating leukocytes and vascular endothelium. Recently it has been reported that ELAM-1 is able to mediate the binding of the colon carcinoma cell line HT-29 to cytokine-activated vascular endothelium, suggesting that tumor cell adhesion to vascular endothelium, a prerequisite for tumor extravasation and metastasis, is in part the result of adhesive interactions between blood-borne tumor cells and cell surface proteins expressed by vascular endothelium. Here, using an approach in which soluble immunoglobulin chimeras of the GMP140 and ELAM-1 receptors were prepared and used to carry out immunohistological studies, we establish that GMP140 binds to tumor cells in a variety of human carcinoma tissue sections (colon, lung, and breast), whereas ELAM-1 binds exclusively to tumor cells in colon carcinoma tissue sections. In addition, GMP140 was found to bind to the cell surface of a number of cell lines derived from various carcinomas but not from melanomas, whereas ELAM-1 bound only colon carcinoma cell lines. We further investigated the nature of the ligands of GMP140 and ELAM-1 on the surface of the carcinoma cells and found that the GMP140 ligand on the surface of tumor cells appears to be distinct from that expressed on the myeloid cell line HL-60. Neuraminidase treatment of a breast carcinoma cell line does not affect, or in some instances increases, GMP140 binding, whereas it completely abolishes GMP140 binding to HL-60 cells. On the other hand, the ligand of ELAM-1 on both the colon carcinoma and HL-60 cells is neuraminidase sensitive in accord with its identification as sialyl-CD15. Parallel results were obtained with neuraminidase-treated frozen carcinoma tissue sections. The present findings form the basis for investigating the role of GMP140 in tumor invasiveness and metastasis.
Synthesis and Characterization of Tungsten(VI) Alkylidene Complexes Supported by an [OCO]3− Trianionic Pincer Ligand: Progress towards the [tBuOCO]W≡CC(CH3)3 Fragment (2010)

The synthesis and characterization of trianionic [tBuOCO]3− pincer-supported tungsten alkylidene and alkylidyne complexes are described. The reaction of an equimolar ratio of (tBuO)3W≡CC(CH3)3 (where tBuO = tert-butoxide) with [tBuOCO]H3 (9) and 2,6-diisopropylphenol affords the alkylidene [tBuOCO]W═CHC(CH3)3(O-2,6-C6H3-iPr2) (10), with a five-coordinate tungsten center that adopts a distorted square-pyramidal geometry. Treatment of (Np)3W≡CC(CH3)3 (11) with 9 provides an equilibrium mixture of the two isomeric alkylidenes with the general formula [(tBuOCO)W═CHC(CH3)3(μ-tBuOCHO)W═CHC(CH3)3(tBuOCO)] (12kin and 12therm). Single crystals of the two isomers cocrystallize and were amenable to X-ray diffraction studies, which revealed subtle differences in their molecular structures, most notably the orientation of the bridging ligand. The complexes are each comprised of two square-pyramidal tungsten ions linked by the diphenolate form of the OCO ligand. Isomer 12kin could not be isolated independently; however, adding PMe2Ph to the metalation between 11 and 9 provided 12therm exclusively, thus enabling a full set of characterization techniques including 2-D NMR spectroscopy. Salt metathesis between [tBuOCHO]K2(THF)2 (15) and (DME)Cl3W≡CC(CH3)3 (16) in diethyl ether produces the alkylidyne (tBuOCHO)W≡CC(CH3)3Cl (17) as the major product along with 12kin and other unidentified decomposition products. As a consequence, characterization of 17 was limited to 1H NMR spectroscopy and mass spectrometry.
Dependence of the substrate specificity and kinetic mechanism of horse-liver alcohol dehydrogenase on the size of the C-3 pyridinium substituent. 3-Benzoylpyridine-adenine dinucleotide (1986)

The kinetic mechanism and the substrate specificity of liver alcohol dehydrogenase are changed when 3-benzoylpyridine-adenine dinucleotide is used as coenzyme. Only primary alcohols are substrates of the enzyme and with ethanol the mechanism becomes rapid-equilibrium random bi-bi. According to model building experiments on a graphic display, the benzoyl group partially enters the substrate binding site, whereas the essential interactions between coenzyme and enzyme are preserved. This restraint on the substrate binding site provides a molecular explanation for the observed dependence between coenzyme and substrate chemical structures.
Evolutionary relationships among aminotransferases (1989)

A data base was compiled containing the amino acid sequences of 12 aspartate aminotransferases and 11 other aminotransferases. A comparison of these sequences by a standard alignment method confirmed the previously reported homology of all aspartate aminotransferases and Escherichia coli tyrosine aminotransferase. However, no significant similarity between these proteins and any of the other aminotransferases was detected. A more rigorous analysis, focusing on short sequence segments rather than the total polypeptide chain, revealed that rat tyrosine aminotransferase and Saccharomyces cerevisiae and Escherichia coli histidinol-phosphate aminotransferase share several homologous sequence segments with aspartate aminotransferases. For comparison of the complete sequences, a multiple sequence editor was developed to display the whole set of amino acid sequences in parallel on a single work-sheet. The editor allows gaps in individual sequences or a set of sequences to be introduced and thus facilitates their parallel analysis and alignment. Several clusters of invariant residues at corresponding positions in the amino acid sequences became evident, clearly establishing that the cytosolic and the mitochondrial isoenzyme of vertebrate aspartate aminotransferase, E. coli aspartate aminotransferase, rat and E. coli tyrosine aminotransferase, and S. cerevisiae and E. coli histidinol-phosphate aminotransferase are homologous proteins. Only 12 amino acid residues out of a total of about 400 proved to be invariant in all sequences compared; they are either involved in the binding of pyridoxal 5'-phosphate and the substrate, or appear to be essential for the conformation of the enzymes.
Current progress in tissue engineering of heart valves: multiscale problems, multiscale solutions (2015)

Whereas much progress has been made to create functional living heart valves, a clinically viable product is not yet realized. The next leap in engineered living heart valves will require a deeper understanding of how the natural multi-scale structural and biological heterogeneity of the tissue ensures its efficient function. Related, improved fabrication strategies must be developed that can replicate this de novo complexity, which is likely instructive for appropriate cell differentiation and remodeling whether seeded with autologous stem cells in vitro or endogenously recruited cells.
Clinical Pharmacogenetics Implementation Consortium (CPIC) Guideline for CYP2D6 and CYP2C19 Genotypes and Dosing of Selective Serotonin Reuptake Inhibitors (2015)

Selective serotonin reuptake inhibitors (SSRIs) are primary treatment options for major depressive and anxiety disorders. CYP2D6 and CYP2C19 polymorphisms can influence the metabolism of SSRIs, thereby affecting drug efficacy and safety. We summarize evidence from the published literature supporting these associations and provide dosing recommendations for fluvoxamine, paroxetine, citalopram, escitalopram, and sertraline based on CYP2D6 and/or CYP2C19 genotype (updates at www.pharmgkb.org).
Rates of Intramolecular Electron Transfer in Ru(bpy)2(im)(His83)-Modified Azurin Increase below 220 K (1998)

ADVERTISEMENT RETURN TO ISSUEPREVCommunicationNEXTRates of Intramolecular Electron Transfer in Ru(bpy)2(im)(His83)-Modified Azurin Increase below 220 KLars K. Skov, Torbjörn Pascher, Jay R. Winkler, and Harry B. GrayView Author Information Department of Chemistry, University of Copenhagen DK-2100, Copenhagen, Denmark Beckman Institute, California Institute of Technology, Pasadena, California 91125 Cite this: J. Am. Chem. Soc. 1998, 120, 5, 1102–1103Publication Date (Web):January 27, 1998Publication History Received28 July 1997Published online27 January 1998Published inissue 1 February 1998https://pubs.acs.org/doi/10.1021/ja972540ahttps://doi.org/10.1021/ja972540arapid-communicationACS PublicationsCopyright © 1998 American Chemical SocietyRequest reuse permissionsArticle Views484Altmetric-Citations73LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information SUBJECTS:Charge transfer,Noncovalent interactions,Peptides and proteins,Redox reactions,Tunneling Get e-Alerts