gebhart/patrepeval huggingface dataset:
Behavior of Mobile Terminal Antennas near Human Tissue at a Wide Frequency Range (2008)

In this paper, the behavior of the impedance bandwidth, SAR and radiation efficiency of mobile terminal antennas are studied by FDTD-based simulations at a wide frequency range, from 0.6 GHz to 6 GHz. The used models comprise a basic coupling element based antenna structure placed beside a simple dielectric block modeling the user. The results of this paper give novel information about the behavior of the bandwidth, SAR and radiation efficiency of mobile terminal antennas near the user. It is shown that even if the resonance frequency changes when dielectric material is brought close to the antenna, the frequency responses of the bandwidth or SAR do not necessarily change accordingly. It is shown also that the locations of the SAR maxima strongly depend on the permittivity of the nearby material. Close relations between the current distribution of the chassis of the antenna and the peak SAR locations are found. The results of this paper give novel information which can be utilized when designing antennas with as low interaction with the user as possible.
γ‐Peptides Forming More Stable Secondary Structures than α‐Peptides: Synthesis and helical NMR‐solution structure of the γ‐hexapeptide analog of H‐(Val‐Ala‐Leu)2‐OH (1998)

Abstract For a comparison with the corresponding α‐ and β‐hexapeptides H‐(Val‐Ala‐Leu) 2 ‐OH (A) and H‐(β‐HVal‐β‐HAla‐β‐HLeu) 2 ‐OH ( B ), we have now prepared the corresponding γ‐hexapeptide 1 built from the homochirally similar ( S )‐4‐aminobutanoic acid, ( R )‐4‐amino‐5‐methylhexanoic acid, and ( R )‐4‐amino‐6‐methylheptanoic acid. The precursors were prepared either by double Arndt ‐ Eistert homologation of the protected amino acids Boc‐Val‐OH, Boc‐Ala‐OH, and Boc‐Leu‐OH ( Schemes 1 and 2 ), or by the superior route involving olefination/hydrogenation of the corresponding aldehydes (Boc‐valinal, Boc‐alaninal, and Boc‐leucinal; Scheme 3 ). Conventional peptide‐coupling methodology (EDC/HOBt) furnished the γ‐hexapeptide 1 (through the intermediate γ‐di‐ and γ‐tripeptide derivatives 9 – 11 ). Analysis of NMR measurements in (D 5 )pyridine and CD 3 OH solution (COSY, TOCSY, HSQC, HMBC, ROESY) reveals that the γ‐hexapeptide 1 adopts a right ‐handed helical structure (( P )‐ 2.6 1 helix of ca. 5‐Å pitch, containing 14‐membered H‐bonded rings) which is to be compared with the left ‐handed helix of the corresponding β‐peptide B (( M )‐ 3 1 helix of 5‐Å pitch, 14‐membered H‐bonded rings) and with the familiar right ‐handed, so‐called α‐helix of α‐peptides (( P )‐ 3.6 1 helix of 5.4‐Å pitch, 13‐membered rings). Like the helix sense, the helix dipole reverses when going from α‐, (N + → C) to β‐(C + → N) to γ‐peptides (N + → C). The surprising difference between the natural α‐, and the analogous β‐ and γ‐peptides is that the helix stability increases upon homologation of the residues.
Computer Generation of Molecular Structures by the SMOG Program (1996)

The SMOG program for exhaustive and irredundant generation of chemical structures by the given molecular formula is described. The program makes use of the graph-theoretical Faradjev algorithm, which was essentially modified to be efficiently applied for chemical purposes. The major improvements of the algorithm include adequate consideration of the sets of required and forbidden structural fragments (“Goodlist” and “Badlist”, respectively), effective use of invariant substructures (“core” fragments), possible consideration of various atomic valence states (atoms with formal charges, etc.), and rigorous treatment of aromatic structures. The output structures are visualized as 2D graphs according to an original algorithm. The advantages and possible applications of this software are discussed.
Urinary Excretion Half-life of Δ1-Tetrahydrocannabinol-7-oic Acid in Heavy Marijuana Users after Smoking (1989)

The urinary excretion of the total amount of delta 1-tetrahydrocannabinol (delta 1-THC) metabolites, with special emphasis on delta 1-tetrahydrocannabinol-7-oic acid (delta 1-THC-7-oic acid), was studied in thirteen heavy Cannabis users after smoking administration of delta 1-THC, followed by a four week discontinuation period. The total amount of delta 1-THC metabolites and the levels of delta 1-THC-7-oic acid could be followed up to 25 days after abstinence using EMIT d.a.u. cannabinoid assay and high-performance liquid chromatography (HPLC). The urinary excretion half-life, calculated from the concentrations of delta 1-THC-7-oic acid versus time, ranged from 0.8-9.8 days with a mean (+/- SD) of 3.0 +/- 2.3 days. Most of the delta 1-THC-7-oic acid was excreted as conjugate and only trace amounts of unconjugated delta 1-THC-7-oic acid were detected. The total concentrations of delta 1-THC-7-oic acid in urine were compared to the concentrations of "cross-reacting cannabinoids", within the linear range of 20-75 ng/mL, obtained in the semiquantitative EMIT d.a.u. cannabinoid assay. The average ratio of "EMIT concentrations"/delta 1-THC-7-oic acid concentrations obtained by HPLC analysis was 1.23 +/- 84% (C.V.) for 78 urine samples. A total of 83% of the samples with positive EMIT levels (cutoff 20 ng/mL) was confirmed by HPLC analysis (cutoff 7 ng/mL).
A gain-of-function of an amyotrophic lateral sclerosis-associated Cu,Zn-superoxide dismutase mutant: An enhancement of free radical formation due to a decrease in Km for hydrogen peroxide. (1996)

Cu,Zn-superoxide dismutase (SOD) is known to be a locus of mutation in familial amyotrophic lateral sclerosis (FALS). Transgenic mice that express a mutant Cu,Zn-SOD, Gly-93--> Ala (G93A), have been shown to develop amyotrophic lateral sclerosis (ALS) symptoms. We cloned the FALS mutant, G93A, and wild-type cDNA of human Cu,Zn-SOD, overexpressed them in Sf9 insect cells, purified the proteins, and studied their enzymic activities for catalyzing the dismutation of superoxide anions and the generation of free radicals with H2O2 as substrate. Our results showed that both enzymes contain one copper ion per subunit and have identical dismutation activity. However, the free radical-generating function of the G93A mutant, as measured by the spin trapping method, is enhanced relative to that of the wild-type enzyme, particularly at lower H2O2 concentrations. This is due to a small, but reproducible, decrease in the value of Km for H2O2 for the G93A mutant, while the kcat is identical for both enzymes. Thus, the ALS symptoms observed in G93A transgenic mice are not caused by the reduction of Cu,Zn-SOD activity with the mutant enzyme; rather, it is induced by a gain-of-function, an enhancement of the free radical-generating function. This is consistent with the x-ray crystallographic studies showing the active channel of the FALS mutant is slightly larger than that of the wild-type enzyme; thus, it is more accessible to H2O2. This gain-of-function, in part, may provide an explanation for the association between ALS and Cu,Zn-SOD mutants.
Interferometric measurement of etch depths in phase-shift masks (1993)

Using etched quartz as a phase shifter for i-line phase shift masks requires an etched depth of 385 nm referenced from the quartz surface. Recent work shows a direct relationship of focus offset as a function of the phase angle as it deviates from 180 degree(s). Knowing the etched depth and phase in transmission becomes critical to the production and verification of these masks. A method of interferometrically evaluating a phase shift mask is proposed. The method calculates the phase shift from the surface profile of the etched shifter assuming that a good optical surface is maintained on the unetched regions. This surface measurement method possesses high spatial resolution at the expense of only knowing the amount of phase shift from the profile of the etched quartz shifter. Correlations between this method and mechanical stylus measurements establish the validity and advantages of this measurement technique.
Cavitation-enhanced MR-guided focused ultrasound ablation of rabbit tumorsin vivousing phase shift nanoemulsions (2014)

Advanced tumors are often inoperable due to their size and proximity to critical vascular structures. High intensity focused ultrasound (HIFU) has been developed to non-invasively thermally ablate inoperable solid tumors. However, the clinical feasibility of HIFU ablation therapy has been limited by the long treatment times (on the order of hours) and high acoustic intensities required. Studies have shown that inertial cavitation can enhance HIFU-mediated heating by generating broadband acoustic emissions that increase tissue absorption and accelerate HIFU-induced heating. Unfortunately, initiating inertial cavitation in tumors requires high intensities and can be unpredictable. To address this need, phase-shift nanoemulsions (PSNE) have been developed. PSNE consist of lipid-coated liquid perfluorocarbon droplets that are less than 200 nm in diameter, thereby allowing passive accumulation in tumors through leaky tumor vasculature. PSNE can be vaporized into microbubbles in tumors in order to nucleate cavitation activity and enhance HIFU-mediated heating. In this study, MR-guided HIFU treatments were performed on intramuscular rabbit VX2 tumors in vivo to assess the effect of vaporized PSNE on acoustic cavitation and HIFU-mediated heating. HIFU pulses were delivered for 30 s using a 1.5 MHz, MR-compatible transducer, and cavitation emissions were recorded with a 650 kHz ring hydrophone while temperature was monitored using MR thermometry. Cavitation emissions were significantly higher (P < 0.05) after PSNE injection and this was well correlated with enhanced HIFU-mediated heating in tumors. The peak temperature rise induced by sonication was significantly higher (P < 0.05) after PSNE injection. For example, the mean per cent change in temperature achieved at 5.2 W of acoustic power was 46 ± 22% with PSNE injection. The results indicate that PSNE nucleates cavitation which correlates with enhanced HIFU-mediated heating in tumors. This suggests that PSNE could potentially be used to reduce the time and/or acoustic intensity required for HIFU-mediated heating, thereby increasing the feasibility and clinical efficacy of HIFU thermal ablation therapy.
Panoramic mosaics by manifold projection (2002)

As the field of view of a picture is much smaller than our own visual field of view, it is common to paste together several pictures to create a panoramic mosaic having a larger field of view. Images with a wider field of view can be generated by using fish-eye lens, or panoramic mosaics can be created by special devices which rotate around the camera's optical center (Quicktime VR, Surround Video), or by aligning, and pasting, frames in a video sequence to a single reference frame. Existing mosaicing methods have strong limitations on imaging conditions, and distortions are common. Manifold projection enables the creation of panoramic mosaics from video sequences under more general conditions, and in particular the unrestricted motion of a hand-held camera. The panoramic mosaic is a projection of the scene into a virtual manifold whose structure depends on the camera's motion. This manifold is more general than the customary projections onto a single image plane or onto a cylinder. In addition to being more general than traditional mosaics, manifold projection is also computationally efficient, as the only image deformations used are image plane translations and rotations. Real-time, software only, implementation on a Pentium-PC, proves the superior quality and speed of this approach.
Disulfide Bond Engineering to Monitor Conformational Opening of Apolipophorin III During Lipid Binding (1996)

Apolipophorin III (apoLp-III) from the Sphinx moth, Manduca sexta, is an exchangeable, amphipathic apolipoprotein that alternately exists in water-soluble and lipid-bound forms. It is organized as a five-helix bundle in solution, which has been postulated to open at putative hinge domains to expose the hydrophobic interior, thereby facilitating interaction with the lipoprotein surface (Breiter, D. R. , Kanost, M. R., Benning, M. M., Wesenberg, G., Law, J. H., Wells, M. A., Rayment, I., and Holden, H. M. (1991) Biochemistry 30, 603-608). To test this hypothesis, we engineered two cysteine residues in apoLp-III, which otherwise lacks cysteine, by site-directed mutagenesis at Asn-40 and Leu-90. Under oxidizing conditions the two cysteines spontaneously form a disulfide bond, which should tether the helix bundle and thereby prevent opening and concomitant lipid interaction. N40C/L90C apoLp-III was overexpressed in Escherichia coli and characterized for disulfide bond formation, secondary structure content, and stability, under both oxidizing and reducing conditions. Functional characterization was carried out by comparing the abilities of the oxidized and reduced protein to associate with modified lipoproteins in vitro. While the reduced form behaved like wild type apoLp-III, the oxidized form was unable to associate with lipoproteins. These results suggest that opening of the helix bundle is required for interaction with lipoproteins and provide a molecular basis for the dual existence of water-soluble and lipid-bound forms of apoLp-III. However, in phospholipid bilayer association assays, wild type, reduced, and oxidized N40C/L90C apoLp-III exhibited similar abilities to transform dimyristoylphosphatidylcholine multilamellar vesicles to disc-like complexes, as judged by electron microscopy. These data emphasize that underlying differences exist in initiating or maintaining a stable interaction of apoLp-III with phospholipid disc complexes versus spherical lipoprotein surfaces.
Minireview: Transcriptional Regulation in Pancreatic Development (2004)

Considerable progress has been made in the understanding of the sequential activation of signal transduction pathways and the expression of transcription factors during pancreas development. Much of this understanding has been obtained by analyses of the phenotypes of mice in which the expression of key genes has been disrupted (knockout mice). Knockout of the genes for Pdx1, Hlxb9, Isl1, or Hex results in an arrest of pancreas development at a very early stage (embryonic d 8-9). Disruption of genes encoding components of the Notch signaling pathway, e.g. Hes1 or neurogenin-3, abrogates development of the endocrine pancreas (islets of Langerhans). Disruption of transcription factor genes expressed more downstream in the developmental cascade (Beta2/NeuroD, Pax4, NKx2.2, and Nkx6.1) curtails the formation of insulin-producing beta-cells. An understanding of the importance of transcription factor genes during pancreas development has provided insights into the pathogenesis of diabetes, in which the mass of insulin-producing beta-cells is reduced.
Effect of Inhaled Inactivated Mycobacterium phlei in Children with Moderate Asthma (2013)

Bacillus Calmette-Guérin and other mycobacterial vaccines are important therapeutic methods in a series of chronic inflammatory disorders characterized by Th1/Th2 imbalance in which Th2 type cells and cytokines often increase. However, few studies have investigated whether it can reduce or prevent the symptoms and attacks in children with asthma. This study evaluated the effect of inactivated Mycobacterium phlei inhaled by an atomizing device placed on asthmatic children. In this randomized, single-center, Seretide-controlled study, children aged 4-12 years with newly diagnosed, moderate, persistent asthma were treated with either inhaled inactivated M. phlei or inhaled Seretide patch. The efficacy of inhaled inactivated M. phlei was related with the alleviation of asthma symptoms, improvement of lung function and reduction of bronchial hyper-responsiveness and total serum IgE, which was similar with Seretide. These findings may have important clinical value in confirming inhaled inactivated M. phlei as a new therapeutic method in moderately asthmatic children.
Charting a Manifold (2002)

this paper we use m i ( j ) N ( j ; i , s ), with the scale parameter s specifying the expected size of a neighborhood on the manifold in sample space. A reasonable choice is s = r/2, so that 2erf(2) &amp;gt; 99.5% of the density of m i ( j ) is contained in the area around y i where the manifold is expected to be locally linear. With uniform p i and i , m i ( j ) and fixed, the MAP estimates of the GMM covariances are S i = m i ( j ) (y j i )(y j i ) # + ( j i )( j i ) # +S j m i ( j ) . (3) Note that each covariance S i is dependent on all other S j . The MAP estimators for all covariances can be arranged into a set of fully constrained linear equations and solved exactly for their mutually optimal values. This key step brings nonlocal information about the manifold&amp;apos;s shape into the local description of each neighborhood, ensuring that adjoining neighborhoods have similar covariances and small angles between their respective subspaces. Even if a local subset of data points are dense in a direction perpendicular to the manifold, the prior encourages the local chart to orient parallel to the manifold as part of a globally optimal solution, protecting against a pathology noted in [8]. Equation (3) is easily adapted to give a reduced number of charts and/or charts centered on local centroids. 4 Connecting the charts We now build a connection for set of charts specified as an arbitrary nondegenerate GMM. A GMM gives a soft partitioning of the dataset into neighborhoods of mean k and covariance S k . The optimal variance-preserving low-dimensional coordinate system for each neighborhood derives from its weighted principal component analysis, which is exactly specified by the eigenvectors of its covariance matrix: Eigendecompose V k L k V # k S k with...
Significance of tumour-associated macrophages, vascular endothelial growth factor and thrombospondin-1 expression for tumour angiogenesis and prognosis in endometrial carcinomas (1999)

Angiogenesis is a key process in tumour growth and metastasis, and microvessel density has been found to influence the prognosis of endometrial carcinoma patients. Less is known about regulators of angiogenesis. Studies of other tumour types have indicated that the density of tumour-associated macrophages (TAMs) and the expression of vascular endothelial growth factor (VEGF) might stimulate vessel formation, whereas thrombospondin-1 (TSP-1) may inhibit this process. We investigated the influence of TAM (CD68+), VEGF and TSP-1 expression on tumour vascular density and prognosis among endometrial carcinoma patients and compared our findings with clinico-pathological variables and tumour markers. In a prospective study, 60 endometrial carcinoma patients with long (median 11 years) and complete follow-up were included. Intratumour density of TAMs was significantly associated with FIGO stage, histological type, histological grade, DNA index, estradiol receptor concentration, intratumour Ki-67 and p53 protein expression (all p < 0.05). Moderate or strong expression of VEGF was significantly associated with serous papillary/clear cell tumour types, high microvessel density and aneuploidy (p < 0.05). There was a tendency to strong TSP-1 expression among tumours with weak VEGF expression (p=0.09). TAM density influenced survival significantly in univariate survival analysis (Kaplan-Meier method, p<0.05) in contrast to VEGF and TSP-1 expression. In Cox regression analysis, however, no independent prognostic impact remained. In conclusion, moderate or strong VEGF expression was significantly associated with high microvessel density and TAM count was increased in a subgroup of aggressive tumours. High TAM density was significantly associated with reduced survival in univariate analysis.
In Vivo Intervertebral Disc Characterization Using Magnetic Resonance Spectroscopy and T1ρ Imaging (2011)

This study demonstrated a relationship between in vivo MRS spectroscopy (water content and PG content), imaging parameters (T1ρ and Pfirrmann grade), discography results, and clinical self-assessment, suggesting that MRS-quantified water, PG, and MR T1ρ relaxation time may potentially serve as biomarkers of symptomatic IVDD.
Genetic and epigenetic associations of circadian gene TIMELESS and breast cancer risk (2011)

Results from recent molecular epidemiologic studies suggest that the core circadian genes play a role in breast tumorigenesis, possibly by influencing hormone regulation or other pathways relevant to cancer. In order to further evaluate this hypothesis, we conducted a genetic and epigenetic association study of the circadian regulator TIMELESS in breast carcinogenesis. We detected significant associations between two tagging SNPs (rs2291738 and rs7302060) in the TIMELESS gene and breast cancer among 441 breast cancer cases and 479 cancer-free controls, with apparent effect modification by ER/PR status. The presence of the C allele of rs7302060 was found to be associated with reduced breast cancer risk (OR, 0.54; 95% CI, 0.54-0.99). In addition, both the G/G genotype of rs2291738 and the C/C genotype of rs7302060 were associated with reduced risk of breast cancer among ER- or PR-positive breast cancer cases (OR, 0.46; 95% CI, 0.22-0.97 and OR, 0.36; 95% CI, 0.17-0.78, respectively). We also observed a significant association between stage II, III, and IV breast cancers and TIMELESS promoter hypomethylation in peripheral blood lymphocytes (OR, 0.35; 95% CI, 0.13-0.96) in 80 breast cancer cases and 80 age-matched controls, which is corroborated by documented overexpression of TIMELESS in breast tumor tissue compared to adjacent normal tissue. Our findings support the hypothesized role of circadian genes in breast tumorigenesis, and identify a set of circadian biomarkers for breast cancer susceptibility.
Cloning of partial cDNA encoding differentiation and tumor-associated mucin glycoproteins expressed by human mammary epithelium. (1987)

Human mammary epithelial cells secrete and express on their cell surfaces complex mucin glycoproteins (Mr greater than 250,000) that are developmentally regulated, tumor-associated, and highly immunogenic. Studies using monoclonal antibodies directed to these glycoproteins suggest that their molecular structures can vary with differentiation stages in the normal gland and in malignancy. To analyze the molecular nature of these glycoproteins, milk mucin was affinity-purified and deglycosylated with hydrogen fluoride, yielding bands at 68 and 72 kDa on silver-stained gels. Polyclonal and monoclonal antibodies to the stripped core protein were developed and used to screen a lambda gt11 expression library of cDNA made from mRNA of the mammary tumor cell line MCF-7. Seven cross-reacting clones were isolated, with inserts 0.1-1.8 kilobases long. RNA blot analysis, using as a probe the 1.8-kilobase insert subcloned in plasmid pUC8 (pMUC10), revealed transcripts of 4.7 and 6.4 kilobases in MCF-7 and T47D mammary tumor cells, whereas normal mammary epithelial cells from pooled milks have additional transcripts. The expression of mRNA correlates with antigen expression as determined by binding of two previously characterized anti-mucin monoclonal antibodies (HMFG-1 and HMFG-2) to seven cell lines. Restriction enzyme analysis detected a restriction fragment length polymorphism when human genomic DNA was digested with EcoRI or HinfI.