gebhart/patrepeval huggingface dataset:
Therapeutic efficacy of a soluble receptor activator of nuclear factor kappaB-IgG Fc fusion protein in suppressing bone resorption and hypercalcemia in a model of humoral hypercalcemia of malignancy. (2001)

Receptor activator of nuclear factor kappaB (RANK) is a membrane-bound tumor necrosis factor receptor homologue that mediates signals obligatory for osteoclastogenesis as well as osteoclast activation and survival in vivo. The present study was undertaken to evaluate the efficacy of a soluble murine RANK-human immunoglobulin fusion protein (muRANK.Fc) as a bone resorption inhibitor in vitro and in vivo. The in vitro studies demonstrated the ability of muRANK.Fc to inhibit human parathyroid hormone-related protein (PTHrP)-induced resorption in fetal rat long bone cultures. Short-term administration of muRANK.Fc to normal growing mice resulted in a complete disappearance of osteoclasts from metaphyses of long bones associated with a pronounced increase in calcified trabeculae and bone radiodensity. In a model of humoral hypercalcemia of malignancy in which PTHrP secreted by s.c. xenografts of human lung cancer in nude mice induces extensive osteolysis and severe hypercalcemia, daily administration of muRANK.Fc from time of tumor implantation profoundly inhibited osteoclastic bone resorption and prevented hypercalcemia. muRANK.Fc had no effect on tumor production of PTHrP, because there was no significant difference between circulating human PTHrP levels in muRANK.Fc-treated and vehicle-treated tumor-bearing mice. Moreover, even when treatment was initiated after hypercalcemia was established, muRANK.Fc significantly attenuated further increases in blood ionized calcium. These data demonstrate the potent antiresorptive effects of muRANK.Fc in vivo as well as highlight the potential utility of disrupting RANK signaling as a novel therapeutic approach in humoral hypercalcemia of malignancy and possibly multiple myeloma and skeletal metastases associated with osteolysis.
Real-time moving object recognition and tracking using computation offloading (2010)

Mobile robots are widely used for computation-intensive tasks such as surveillance, moving object recognition and tracking. Existing studies perform the computation entirely on robot processors or on dedicated servers. The robot processors are limited by their computation capability; real-time performance may not be achieved. Even though servers can perform tasks faster, the communication time between robots and servers is affected by variations in wireless bandwidths. In this paper, we present a system for realtime moving object recognition and tracking using computation offloading. Offloading migrates computation to servers to reduce the computation time on the robots. However, the migration consumes additional time, referred as communication time in this paper. The communication time is dependent on data size exchanged and the available wireless bandwidth. We estimate the computation and communication needed for the tasks and choose to execute them on robot processors or servers to minimize the total execution time, in order to satisfy real-time constraints.
Synthesis and biological activity of 2'-deoxy-4'-thio pyrimidine nucleosides (1991)

2'-Deoxy-4'-thiocytidine (7 beta), 2'-deoxy-4'-thiouridine (9), and 4'-thiothymidine (10) have been synthesized and evaluated for cytotoxicity in vitro. All these compounds were cytotoxic to L1210, H-Ep-2, and CCRF-CEM cell lines. 4'-Thiothymidine was also active against herpes simplex 1 and human cytomegalovirus in cell culture.
Pathology of Berkeley sickle cell mice: similarities and differences with human sickle cell disease (2005)

Because Berkeley sickle cell mice are used as an animal model for human sickle cell disease, we investigated the progression of the histopathology in these animals over 6 months and compared these findings to those published in humans with sickle cell disease. The murine study groups were composed of wild-type mixed C57Bl/6-SV129 (control) mice and sickle cell (SS) mice (alpha-/-, beta-/-, transgene +) of both sexes and between 1 and 6 months of age. SS mice were similar to humans with sickle cell disease in having erythrocytic sickling, vascular ectasia, intravascular hemolysis, exuberant hematopoiesis, cardiomegaly, glomerulosclerosis, visceral congestion, hemorrhages, multiorgan infarcts, pyknotic neurons, and progressive siderosis. Cerebral perfusion studies demonstrated increased blood-brain barrier permeability in SS mice. SS mice differed from humans with sickle cell disease in having splenomegaly, splenic hematopoiesis, more severe hepatic infarcts, less severe pulmonary manifestations, no significant vascular intimal hyperplasia, and only a trend toward vascular medial hypertrophy. Early retinal degeneration caused by a homozygous mutation (rd1) independent from that causing sickle hemoglobin was an incidental finding in some Berkeley mice. While our study reinforces the fundamental strength of this model, the notable differences warrant careful consideration when drawing parallels to human sickle cell disease.
Terrain simulation using a model of stream erosion (1988)

The major process affecting the configuration and evolution of terrain is erosion by flowing water. Landscapes thus reflect the branching patterns of river and stream networks. The network patterns contain information that is characteristic of the landscape's topographic features. It is therefore possible to create an approximation to natural terrain by simulating the erosion of stream networks on an initially uneroded surface. Empirical models of stream erosion were used as a basis for the model presented here. Stream networks of various sizes and shapes are created by the model from a small number of initial parameters. The eroded surface is represented as a surface under tension, using the tension parameter to shape the profiles of valleys created by the stream networks. The model can be used to generate terrain databases for flight simulation and computer animation applications.
Spectroscopic Engineering toward Near‐Infrared Absorption of Materials Containing Perylene Diimide (2017)

The ability to tune the dye structure synthetically has been crucial in the development of materials with tailored properties for given applications. In this contribution, a series of discrete molecules are reported, which are constructed from the perylene diimide (PDI) chromophore and three dyes, namely thienyl diketopyrrolopyrrole (DPP<sub>Th2</sub> ), pyridyl diketopyrrolopyrrole (DPP<sub>Pyr2</sub> ), and thienoisoindigo (TII). Through the choice of dye molecule and linking of the dye and PDI through conjugated acetylene bridges, the light-harvesting characteristics can be engineered to exhibit optical absorption in the range 300-900 nm. Each molecule shows ambipolar redox behavior, leading to unique electrochromic behavior.
Low-temperature processed meso-superstructured to thin-film perovskite solar cells (2013)

We have reduced the processing temperature of the bulk absorber layer in CH3NH3PbI3−xClx perovskite solar cells from 500 to <150 °C and achieved power conversion efficiencies up to 12.3%. Remarkably, we find that devices with planar thin-film architecture, where the ambipolar perovskite transports both holes and electrons, convert the absorbed photons into collected charge with close to 100% efficiency.
Cyclophosphamide enhances anti-tumor effect of wild-type p53-specific CTL (2000)

The tumor suppressor protein p53 is overexpressed in up to 50% of all human malignancies, both in solid tumors as well as hematological malignancies, and is therefore an attractive target for immunotherapy. We have recently shown that cytotoxic T lymphocytes (CTL), raised in p53 gene deficient (p53 -/-) mice and recognizing a murine wild-type (wt) p53 peptide, were able to eradicate a mutant p53-induced and overexpressing tumor in p53 +/+ nude mice. These CTL also prevented the outgrowth of a more aggressive p53-overexpressing tumor in immunocompetent C57BL/6 mice. Importantly, this occurred in the absence of demonstrable damage to normal tissue. Possibly due to the aggressive nature of the latter tumor, adoptive transfer of wtp53-specific CTL did not result in the eradication of established tumors, either in nude or immunocompetent mice. Therefore, we explored whether the cytotoxic drug cyclophosphamide (CY) could potentiate the therapeutic activity of wtp53-specific CTL. We show here that CY acts synergistically with adoptively transferred wtp53-specific CTL in controlling the growth of an aggressive mutant p53-induced and overexpressing tumor. Previously described mechanisms underlying the synergism between CY and immune T cells were evaluated, but were not found to be operational in this model.
Treatment of Multiple Sclerosis with Tolbutamide (1960)

The study of the effects of tolbutamide and dietary carbohydrate in multiple sclerosis was prompted by an almost complete remission of symptoms in a patient soon after initiation of tolbutamide therapy for acne. Tolbutamide was alternated with placebo capsules in six of the seven patients studied, the dosage ranging from 0.5 to 1.5 Gm. per day. The amount of dietary carbohydrate was frequently changed between high and low values. In all cases, except when a high-corbohydrate diet was started, remission was evident after administration of tolbutamide, whereas placebo capsule substitution was followed by exacerbation. In the majority of patients, a low-carbohydrate diet was beneficial, a high carbohydrate diet detrimental.
EXAFS Characterization of Dendrimer−Pt Nanocomposites Used for the Preparation of Pt/γ-Al2O3 Catalysts (2006)

Pt/gamma-Al2O3 catalysts were prepared using hydroxyl-terminated generation four (G4OH) PAMAM dendrimers as the templating agents and the various steps of the preparation process were monitored by extended X-ray absorption fine structure (EXAFS) spectroscopy. The EXAFS results indicate that, upon hydrolysis, chlorine ligands in the H(2)PtCl(6) and K(2)PtCl(4) precursors were partially replaced by aquo ligands to form [PtCl3(H2O)3]+ and [PtCl2(H2O)2] species, respectively. The results further suggest that, after interaction of such species with the dendrimer molecules, chlorine ligands from the first coordination shell of Pt were replaced by nitrogen atoms from the dendrimer interior, indicating that complexation took place. This process was accompanied by a substantial transfer of electron density from the dendrimer to platinum, indicating that the dendrimer plays the role of a ligand. Following treatment of the H(2)PtCl(6)/G4OH and K(2)PtCl(4)/G4OH complexes with NaBH4, no substantial changes were observed in the electronic or coordination environment of platinum, indicating that metal nanoparticles were not formed during this step under our experimental conditions. However, when the reduction treatment was performed with H2, the formation of extremely small platinum clusters, incorporating no more than four Pt atoms was observed. The nuclearity of these clusters depends on the length of the hydrogen treatment. These Pt species remained strongly bonded to the dendrimer. Formation of larger platinum nanoparticles, with an average diameter of approximately 10 A, was finally observed after the deposition and drying of the H(2)PtCl(6)/G4OH nanocomposites on a gamma-Al(2)O(3) surface, suggesting that the formation of such nanoparticles may be related to the collapse of the dendrimer structure. The platinum nanoparticles formed appear to have high mobility because subsequent thermal treatment in O2/H2, used to remove the dendrimer component, led to further sintering.
Interferon alpha (IFN alpha) signaling in cells expressing the variant form of the type I IFN receptor. (1994)

Two different Type I interferon receptors (IFN-R) have been described: the normal and the variant receptors. The alpha subunit of the Type I IFN-R has a molecular mass of 110 kDa in cells expressing normal and variant receptors. The beta subunit has a molecular mass of approximately 100 kDa in cells that express normal receptors and 55 kDa in cells expressing the variant form of the receptor. The IFN alpha-resistant U-937 cell line expresses variant receptors and fails to down-regulate and phosphorylate the alpha subunit on tyrosine residues. We report that two other myelomonocytic cell lines, YK-M2 and ML-2, also expressing the variant form of the receptor, fail to down-regulate and phosphorylate the alpha subunit on tyrosine residues. However, YK-M2 and ML-2 cells are sensitive to the antiproliferative and antiviral effects of IFN alpha 2, indicating that phosphorylation of the alpha subunit is not necessary to elicit an IFN alpha response and that expression of variant receptors is not a source of IFN alpha resistance. We also determined if other proteins involved in the IFN alpha signal transduction pathway had a different phosphorylation pattern. Treatment of cells expressing variant receptors induced tyrosine phosphorylation of the p135tyk2 tyrosine kinase, and the three interferon-stimulated gene factor 3 alpha (ISGF3 alpha) polypeptides (p113, p91, and p84), albeit at lower levels. These results indicate that cells expressing either form of the Type I IFN-R phosphorylate a similar set of proteins, with the exception of the alpha subunit.
A Calcium-Sensitive Magnetic Resonance Imaging Contrast Agent (1999)

Ca^(2+) is an important intracellular secondary messenger of signal transduction. Changes in the cytosolic concentration of Ca^(2+) trigger changes in cellular metabolism and are responsible for cell signaling and regulation. Advances in optical microscopy techniques and improvements in fluorescent dyes capable of measuring&#13;\nCa^(2+) concentration have added greatly to the understanding of the critical role this ion plays in cell and neurobiology. However, a fundamental limitation of light-based microscope imaging techniques employing dyes or fluorochromes is that they produce toxic photobleaching byproducts and are limited by light scattering to those cells within 100 µm of the surface. Magnetic resonance&#13;\nimaging (MRI) of biological structures provides an alternative to light-based microscopy that can circumvent these limitations. Recent work in this area has demonstrated the feasibility of true three-dimensional MR imaging at cellular resolution (~10 µm).
An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis (2006)

A systems-level understanding of a small but essential population of cells in development or adulthood (e.g. somatic stem cells) requires accurate quantitative monitoring of genome-wide gene expression, ideally from single cells. We report here a strategy to globally amplify mRNAs from single cells for highly quantitative high-density oligonucleotide microarray analysis that combines a small number of directional PCR cycles with subsequent linear amplification. Using this strategy, both the representation of gene expression profiles and reproducibility between individual experiments are unambiguously improved from the original method, along with high coverage and accuracy. The immediate application of this method to single cells in the undifferentiated inner cell masses of mouse blastocysts at embryonic day (E) 3.5 revealed the presence of two populations of cells, one with primitive endoderm (PE) expression and the other with pluripotent epiblast-like gene expression. The genes expressed differentially between these two populations were well preserved in morphologically differentiated PE and epiblast in the embryos one day later (E4.5), demonstrating that the method successfully detects subtle but essential differences in gene expression at the single-cell level among seemingly homogeneous cell populations. This study provides a strategy to analyze biophysical events in medicine as well as in neural, stem cell and developmental biology, where small numbers of distinctive or diseased cells play critical roles.
Reduced Rate of Energy Expenditure as a Risk Factor for Body-Weight Gain (1988)

The contribution of reduced energy expenditure to the development of obesity has been a point of controversy. We measured 24-hour energy expenditure (adjusted for body composition, age, and sex), in a respiratory chamber, in 95 southwestern American Indians. Energy expenditure correlated with the rate of change in body weight over a two-year follow-up period (r = -0.39, P less than 0.001). The estimated risk of gaining more than 7.5 kg in body weight was increased fourfold in persons with a low adjusted 24-hour energy expenditure (200 kcal per day below predicted values) as compared with persons with a high 24-hour energy expenditure (200 kcal per day above predicted values; P less than 0.01). In another 126 subjects, the adjusted metabolic rate at rest at the initial visit was also found to predict the gain in body weight over a four-year follow-up period. When the 15 subjects who gained more than 10 kg were compared with the remaining 111 subjects, the initial mean (+/- SD) adjusted metabolic rate at rest was lower in those who gained weight (1694 +/- 103 vs. 1764 +/- 109 kcal per day; P less than 0.02) and increased to 1813 +/- 134 kcal per day (P less than 0.01) after a mean weight gain of 15.7 +/- 5.7 kg. In a group of 94 siblings from 36 families, values for adjusted 24-hour energy expenditure aggregated in families (intraclass correlation = 0.48). We conclude that a low rate of energy expenditure may contribute to the aggregation of obesity in families.
MAPping the Chiral Inversion and Structural Transformation of a Metal-Tripeptide Complex Having Ni-Superoxide Dismutase Activity (2011)

The metal abstraction peptide (MAP) tag is a tripeptide sequence capable of abstracting a metal ion from a chelator and binding it with extremely high affinity at neutral pH. Initial studies on the nickel-bound form of the complex demonstrate that the tripeptide asparagine-cysteine-cysteine (NCC) binds metal with 2N:2S, square planar geometry and behaves as both a structural and functional mimic of Ni superoxide dismutase (Ni-SOD). Electronic absorption, circular dichroism (CD), and magnetic CD (MCD) data collected for Ni-NCC are consistent with a diamagnetic Ni(II) center. It is apparent from the CD signal of Ni-NCC that the optical activity of the complex changes over time. Mass spectrometry data show that the mass of the complex is unchanged. Combined with the CD data, this suggests that chiral rearrangement of the complex occurs. Following incubation of the nickel-containing peptide in D(2)O and back-exchange into H(2)O, incorporation of deuterium into non-exchangeable positions is observed, indicating chiral inversion occurs at two of the α carbon atoms in the peptide. Control peptides were used to further characterize the chirality of the final nickel-peptide complex, and density functional theory (DFT) calculations were performed to validate the hypothesized position of the chiral inversions. In total, these data indicate Ni-SOD activity is increased proportionally to the degree of structural change in the complex over time. Specifically, the relationship between the change in CD signal and change in SOD activity is linear.
Role of ischaemic preconditioning in liver regeneration following major liver resection and transplantation (2007)

肝 ischaemic preconditioning (欧洲电脑生产厂商) 被知道保护肝免受 ischaemic-reperfusion 损害(IRI ) 的有害效果的伤害，它显著地作出贡献到跟随主要的肝外科的病态和死亡。最近的研究在肝新生集中于欧洲电脑生产厂商的角色，哪个不是的精确机制完全理解。这评论在这个背景讨论肝新生的机制和欧洲电脑生产厂商的角色的当前的理解。相关文章用 Medline 数据库从出版文学被考察。搜索用关键词被执行“肝”，“ ischaemic 灌注”，“ ischaemic preconditioning ”，“新生”，“肝切除术”和“移植”。肝新生的内在的机制是包含 cytokines，生长因素和肝的新陈代谢的需求的相互作用的一个复杂过程。通过各种各样的调停人，欧洲电脑生产厂商由起来调整的支持生长的因素支持肝新生并且象损坏压力一样压制禁止生长的因素。涉及欧洲电脑生产厂商的细胞的机制的增加的理解将启用形式在支持肝新生列在后面瞄准了的其他的处理的发展主要的肝切除术和移植。
Positional Bias of MHC Class I Restricted T-Cell Epitopes in Viral Antigens Is Likely due to a Bias in Conservation (2013)

The immune system rapidly responds to intracellular infections by detecting MHC class I restricted T-cell epitopes presented on infected cells. It was originally thought that viral peptides are liberated during constitutive protein turnover, but this conflicts with the observation that viral epitopes are detected within minutes of their synthesis even when their source proteins exhibit half-lives of days. The DRiPs hypothesis proposes that epitopes derive from Defective Ribosomal Products (DRiPs), rather than degradation of mature protein products. One potential source of DRiPs is premature translation termination. If this is a major source of DRiPs, this should be reflected in positional bias towards the N-terminus. By contrast, if downstream initiation is a major source of DRiPs, there should be positional bias towards the C-terminus. Here, we systematically assessed positional bias of epitopes in viral antigens, exploiting the large set of data available in the Immune Epitope Database and Analysis Resource. We show a statistically significant degree of positional skewing among epitopes; epitopes from both ends of antigens tend to be under-represented. Centric-skewing correlates with a bias towards class I binding peptides being over-represented in the middle, in parallel with a higher degree of evolutionary conservation.
Tumor necrosis factor-alpha receptor expression on chondrocytes isolated from human articular cartilage. (1994)

p55 TNF-alpha receptor expression is significantly increased on OA chondrocytes ex vivo. Enhanced expression of p55, purported to be the biologically active receptor, could contribute to OA cartilage degradation.
Low-Temperature Exfoliated Graphenes: Vacuum-Promoted Exfoliation and Electrochemical Energy Storage (2009)

A preheated high-temperature environment is believed to be critical for a chemical-exfoliation-based production of graphenes starting from graphite oxide, a belief that is based on not only experimental but also theoretical viewpoints. A novel exfoliation approach is reported in this study, and the exfoliation process is realized at a very low temperature, which is far below the proposed critical exfoliation temperature, by introducing a high vacuum to the exfoliation process. Owing to unique surface chemistry, low-temperature exfoliated graphenes demonstrate an excellent energy storage performance, and the electrochemical capacitance is much higher than that of the high-temperature exfoliated ones. The low-temperature exfoliation approach presents us with a possibility for a mass production of graphenes at low cost and great potentials in energy storage applications of graphene-based materials.
Reliability of placental histology using archived specimens (1999)

Archived placental materials provide a resource for retrospective studies of perinatal outcomes. Using archived specimens, we evaluated inter-rater reliability in the assessment of placental histological features possibly associated with neonatal illness and long-term neurological outcome. Five expert placental pathologists independently reviewed archived placental specimens on 30 subjects born during 1983-85 in six different hospitals. Moderate to substantial agreement among the raters was observed for a variety of indicators of inflammation, presence of macrophages with pigment and indicators of villous maturity, increased syncytial knots and maternal vasculopathy. Existing pathology reports for these specimens from routine histology examinations conducted at the time of delivery were in substantial agreement with expert review for the presence of any subchorionitis/chorionitis/chorioamnionitis. In conclusion, considerable inter-rater agreement was observed for several relatively common and potentially important placental findings. Archived placental materials and pathology reports may be useful in retrospective studies.