gebhart/patrepeval huggingface dataset:
Assessment of energy expenditure for physical activity using a triaxial accelerometer (1994)

A triaxial accelerometer was used to evaluate the relationship between energy expenditure due to physical activity (EEact) and body acceleration during different types of activity. In a laboratory experiment, 11 male subjects performed sedentary activities and walked on a motor driven treadmill (3-7 km.h-1). EEact was calculated from total energy expenditure (EEtot), as measured by indirect calorimetry, and sleeping metabolic rate (SMR): EEact = EEtot--SMR. Body accelerations were measured with a triaxial accelerometer at the low back. Special attention was paid to the analysis of unidirectional and three-directional accelerometer output. During sedentary activities a linear relationship between EEact and the sum of the integrals of the absolute value of accelerometer output from all three measurement directions (IAAtot) was found (r = 0.82, P < 0.001, Sy,x = 0.22 W.kg-1). During walking EEact was highly correlated with the integral of absolute accelerometer output in antero-posterior direction (IAAx; r = 0.96, P < 0.001, Sy,x = 0.53 W.kg-1). When all examined activities were included in a regression analysis, a strong linear relationship between EEact and IAAtot was found (r = 0.95, P < 0.001, Sy,x = 0.70 W.kg-1). Using this relationship, EEact during sedentary activities as well as EEact during walking could be estimated with an accuracy of about 15%. Although sedentary activities and walking represent a large part of normal daily physical activity, the validity and usefulness of the triaxial accelerometer--measuring IAAtot--to predict EEact in daily life must be studied under free-living conditions.
The Unified Medical Language System (UMLS): integrating biomedical terminology (2003)

The Unified Medical Language System (http://umlsks.nlm.nih.gov) is a repository of biomedical vocabularies developed by the US National Library of Medicine. The UMLS integrates over 2 million names for some 900,000 concepts from more than 60 families of biomedical vocabularies, as well as 12 million relations among these concepts. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank. In addition to data, the UMLS includes tools for customizing the Metathesaurus (MetamorphoSys), for generating lexical variants of concept names (lvg) and for extracting UMLS concepts from text (MetaMap). The UMLS knowledge sources are updated quarterly. All vocabularies are available at no fee for research purposes within an institution, but UMLS users are required to sign a license agreement. The UMLS knowledge sources are distributed on CD-ROM and by FTP.
Production and clearance sites of two molecular forms of adrenomedullin in human plasma (2000)

Human adrenomedullin (AM) precursor is converted to glycine-extended AM (AM-Gly), an inactive intermediate form of AM. Subsequently, AM-Gly is converted to active mature AM (AM-m) by enzymatic amidation. A recent study showed that two molecular forms of adrenomedullin (AM) are present in human plasma. In this study we investigated the production and clearance sites of two molecular forms of adrenomedullin in humans. We measured plasma levels of AM-m and AM-Total (T) (AM-m+AM-Gly) by immunoradiometric assay and calculated plasma levels of AM-Gly in blood samples taken from various sites during cardiac catheterization in patients with ischemic heart disease. Plasma AM-m levels were significantly lower in left-sided sites after passing through pulmonary circulation than in right-sided sites, whereas there were no significant differences in AM-Gly levels between left-sided sites and right-sided sites. These results suggest that AM-m produced in many organs is released into veins and that the main clearance sites of AM-m are the lungs. Considering that AM preferentially dilates pulmonary vessels rather than systemic vessels, a possible role of this peptide is suggested in the regulation of pulmonary vascular tonus.
Evaluation of Biologic Sources of Variation of Leukocyte Counts and Other Hematologic Quantities Using Very Precise Automated Analyzers (1978)

The authors determined mean day-to-day (daily over five days), mean week-to-week (weekly over five weeks) and mean hour-to-hour (800 h, 1100 h, 1400 h) physiologic intra-individual variation of concentration values of leukocyte cell types, platelet count, and erythrocyte values (hematocrit, hemoglobin) for a group of 20 healthy adult volunteers. Total leukocyte counts and concentration values of leukocyte cell types were determined in duplicate on the Hemalong-DTM Automated Leukocyte Differential Cell Counter to minimize analytic variation. The data sets were analyzed according to an analysis of variance model. The mean physiologic hour-to-hour and week-to-week intra-individual variations in terms of % coefficient of variation included: hemoglobin, 2.5, 2.2; hematocrit, 2.6, 2.7; platelets, 1.6, 6.6; total leukocyte count, 9.4, 15.7; neutrophils, 12.9, 26.0; lymphocytes, 10.3, 13.2; monocytes, 18.6, 19.3; eosinophils, 19.9, 26.9; basophils, 7.4, 15.0; large unstained cells, 13.7, 16.0; "high-peroxidase" cells, 32.7, 25.7. Hour-to-hour variation was partitioned into random diurnal variation, group-consistent diurnal variation, and subject-specific unique individual variation. Subject-specific diurnal variation contributed greatly and statistically significantly to total diurnal variation for many of the leukocyte cell types--especially in the case of eosinophils, where it represented more than half of total diurnal variation.
GraphDiaries: Animated Transitions andTemporal Navigation for Dynamic Networks (2013)

Identifying, tracking and understanding changes in dynamic networks are complex and cognitively demanding tasks. We present GraphDiaries, a visual interface designed to improve support for these tasks in any node-link based graph visualization system. GraphDiaries relies on animated transitions that highlight changes in the network between time steps, thus helping users identify and understand those changes. To better understand the tasks related to the exploration of dynamic networks, we first introduce a task taxonomy, that informs the design of GraphDiaries, presented afterwards. We then report on a user study, based on representative tasks identified through the taxonomy, and that compares GraphDiaries to existing techniques for temporal navigation in dynamic networks, showing that it outperforms them in terms of both task time and errors for several of these tasks.
A non‐RD1 gene cluster is required for Snm secretion in Mycobacterium tuberculosis (2005)

The Snm secretion system is a crucial virulence determinant of Mycobacterium tuberculosis. Genes encoding all known components of this alternative secretion pathway are clustered at the same genetic locus, known as RD1. Here, we show that a mutant M. tuberculosis strain containing a transposon insertion in the Rv3615c gene, which is situated outside the RD1 locus, results in loss of Snm secretion. Complementation analysis revealed that both Rv3615c and the downstream gene Rv3614c are required for Snm secretion. Thus, we have renamed the two genes snm9 and snm10 respectively. The snm9::Tn mutant phenocopies bona fide snm mutants, exhibiting attenuation in mice, macrophage growth defects and failure to suppress cytokine induction. Furthermore, yeast two-hybrid analysis revealed a physical interaction between Snm10 and Snm7 (Rv3882c), suggesting that Snm10 may function in complex with other Snm proteins during secretion. Thus, snm9 and snm10 are the first genes located outside the RD1 locus identified as critical components of Snm secretion. These data indicate that Snm secretion consists of an elaborate network of interactions that likely arose from multiple duplication events during the evolution of M. tuberculosis.
Use of infrared spectroscopy to assess secondary structure of human growth hormone within biodegradable microspheres (1999)

The purpose of this study was to test the utility of infrared (IR) spectroscopy to determine protein secondary structure in biodegradable microspheres. Encapsulation of proteins within biodegradable polymers, [e.g. poly(lactic-co-glycolic acid) (PLGA)] for controlled drug release has recently been the subject of intense research effort. The ability to assess protein integrity after microsphere production is necessary to successfully produce microspheres that release native proteins. We used IR spectroscopy, a noninvasive method-as opposed to conventional organic solvent extraction or in vitro release at elevated temperature-to assess the secondary structure of recombinant human growth hormone (rhGH) within dry and rehydrated microspheres. PLGA microspheres containing rhGH with different excipients were prepared by a conventional double-emulsion method. The protein IR spectra indicated that the encapsulation process could perturb the structure of rhGH and that excipients could inhibit this damage to varying degrees. A strong positive correlation was found between intensity of the dominant alpha-helical band in the spectra of rhGH in rehydrated microspheres and the percent monomer released from microspheres during incubation in buffer. We also studied microspheres prepared with zinc-precipitated rhGH. The addition of Zn2+ during microsphere processing partially inhibited protein unfolding and fostered complete refolding of rhGH upon rehydration. In conclusion, IR spectroscopy can serve as a valuable tool to assess protein structure within both dried and rehydrated microspheres.
Humanized anti-Lewis Y antibodies: in vitro properties and pharmacokinetics in rhesus monkeys. (1996)

ABL 364 is a murine monoclonal IgG3 antibody directed against the Lewis Y carbohydrate antigen (Le(y)) expressed on the surface of many epithelial cell tumors. The antibody mediates cytotoxicity via activation of human complement or human effector cells, and has been evaluated in several clinical trials including two Phase I/II trials in relapsed small cell lung cancer and metastatic breast cancer. To improve the effector functions of the antibody, increase its half-life in circulation, and avoid the human antimouse antibody response, two chimeric and several humanized antibodies were constructed for evaluation. The chimeric IgG1 is more potent than the murine IgG3 in tumor cell lysis via activation of human peripheral mononuclear cells (10-fold), but somewhat less effective in complement-dependent lysis (2-3 fold). The chimeric IgG3 is slightly less potent than the IgG1. A humanized IgG1 was constructed by combining the complementarity-determining regions of the ABL 364 antibody with human framework and constant regions. Several additional variants were subsequently constructed to improve the binding affinity and increase expression of the antibody. Two of the variants, designated I and K, differ by a single amino acid at position 75 of the heavy chain. Both variants have affinity within 2-fold of the chimeric IgG1 antibody and retain the cytolytic activities toward tumor cell lines. However, it was possible to express variant K at a significantly higher level (5- 10-fold) than variant I. Pharmacokinetics of the humanized ABL 364 antibody variant K was compared with that of the parent murine antibody in rhesus monkeys. It was shown that the terminal half-life of the humanized antibody in rhesus monkeys is 14-20 days, with a mean of 16.3 days, while that of the parent murine antibody is only 1.9 days.
Paramagnetic agents for contrast-enhanced NMR imaging: a review (1983)

The use of paramagnetic agents for contrast enhancement may extend the diagnostic potential of nuclear magnetic resonance (NMR) imaging. Proton relaxation is enhanced in targeted organ systems after either oral or intravenous administration of suitable paramagnetic agents. A decrease in T1 and T2, the spin-lattice and spin-spin relaxation times, can then be observed as an increase in signal intensity on NMR imaging. Initial investigations have focused on development of agents incorporating either paramagnetic ions or stable free radicals. Principles in development and application are illustrated with examples from experiments using the Vanderbilt Technicare 0.5 T NMR imager.
Fundamental aspects in machining of metals with short and ultrashort laser pulses (2004)

On the fast growing market of precision micro-machining of metals lasers do not only compete with other methods of structuring. There is also strong competition among different laser-processing strategies and, especially, among laser sources with different pulse duration. A comprehensive study of laser micro-machining with nanosecond, picosecond, and femtosecond laser pulses will be presented with a focus on fundamental aspects of the processes and on their practical consequences. An analysis will be given of the potential or the limitations of these laser processes with respect to their industrial application.
Yet another privacy metric for publishing micro-data (2008)

Recently many schemes, including k-anonymity [8], l-diversity [6] and t-closeness [5] have been introduced for preserving individual privacy when publishing database tables. Furthermore k-anonymity and l-diversity have been shown to have weaknesses. In this paper, we show that t-closeness also has limitations, more specifically we argue that: i) choosing the correct value for t is difficult, ii) t-closeness does not allow some values of sensitive attributes to be more sensitive than other values, and iii) to prevent certain types of privacy leaks t must be set to such a small value that it produces low-quality published data. In this paper we propose a new privacy metric,(αi, βi)-closeness, that mitigates these problems. We also show how to calculate an optimal release table (in the full domain model) that satisfies (αi, βi)-closeness and we present experimental results that show that the data quality provided by 9αi, β;i),-closeness is higher than t-closeness, k-anonymity, and l-diversity while achieving the same privacy goals.
Intercellular space is affected by the polysialic acid content of NCAM. (1992)

We have previously proposed that polysialic acid (PSA), which is attached to NCAM on the cell surface, can serve to regulate a variety of cell-cell interactions. The present study provides evidence that hydrated PSA influences a sufficiently large volume at the cell surface to exert broad steric effects, and that the removal of PSA in fact causes a detectable change in intercellular space. Using F11 neuron/neuroblastoma hybrid cells as a model system, the measured density and size of PSA suggests that a substantial fraction of the space between two apposed cell surface membranes could be sterically influenced by the presence of PSA. Specific enzymatic removal of PSA, which is similar in magnitude to changes that occur in many tissues during normal development, caused about a 25% decrease in the distance between two apposed cells. By contrast, removal of both heparan sulfate and chondroitin sulfate from the cells had no effect on this parameter. It is proposed that such changes in membrane-membrane distance could serve to alter selectively the efficiency of encounter between complementary receptors on apposing cells, and explain at least in part the broad biological influences of PSA.
Low‐pH‐sensitive poly(ethylene glycol) (PEG)‐stabilized plasmid nanolipoparticles: effects of PEG chain length, lipid composition and assembly conditions on gene delivery (2004)

Of the PEG-orthoester lipids tested, POD 2000 is the better choice for the preparation of sterically stabilized NLPs with a small particle diameter, good stability, low cytotoxicity, and satisfactory transfection activity.
Computer Vision Based Methods for Detecting Weeds in Lawns (2006)

In this paper, two methods for detecting weeds in lawns using computer vision techniques are proposed. The first is based on an assumption about the differences in statistical values between the weed and grass areas in edge images and using Bayes classifier to discriminate them. The second also uses the differences in texture between both areas in edge images but instead applies only simple morphology operators. Correct weed detection rates range from 77.70 to 82.60% for the first method and from 89.83 to 91.11% for the second method. In addition, the proposed methods together with a chemical weeding system as well as a non-chemical weeding system based on pulse high voltage discharge are simulated and the efficiency of the overall systems are evaluated theoretically. With a chemical based system, more than 72% of the weeds can be destroyed with a herbicide reduction rate of 90 to 94% for both methods. For the latter weeding system, killed weed rate varies from 58% to 85%
An Application of MAP-MRF to Change Detection in Image Sequence Based on Mean Field Theory (2005)

Change detection is one of the most important problems in video segmentation. In conventional methods, predetermined thresholds are utilized to test the variation between frames. Although certain reasonings about the thresholds are provided, appropriate determination of these parameters is still problematic. We present a new approach to change detection from an optimization point of view. We model the video frames and the change detection map (CDM) as Markov random fields (MRFs), and formulate change detection into a problem of seeking the optimal configuration of the CDM. Under the MRF assumption, the optimal solution, in the sense of maximum a posteriori (MAP), is obtained by minimizing the energy function associated with the MRF which is designed by utilizing the prior knowledge of noise and contextual constraints on the video frames. An algorithm that computes the potentials and optimizes the solution is constructed by applying the mean field theory (MFT). The experimental results show that the new method detects changes accurately and is robust to noise.
Low-Frequency rTMS Ameliorates Autistic-Like Behaviors in Rats Induced by Neonatal Isolation Through Regulating the Synaptic GABA Transmission (2018)

Patients with autism spectrum disorder (ASD) display abnormalities in neuronal development, synaptic function and neural circuits. The imbalance of excitatory and inhibitory (E/I) synaptic transmission has been proposed to cause the main behavioral characteristics of ASD. Repetitive transcranial magnetic stimulation (rTMS) can directly or indirectly induce excitability and synaptic plasticity changes in the brain noninvasively. However, whether rTMS can ameliorate autistic-like behaviors in animal model via regulating the balance of E/I synaptic transmission is unknown. By using our recent reported animal model with autistic-like behaviors induced by neonatal isolation (postnatal days 1-9), we found that low-frequency rTMS (LF-rTMS, 1 Hz) treatment for 2 weeks effectively alleviated the acquired autistic-like symptoms, as reflected by an increase in social interaction and decrease in self-grooming, anxiety- and depressive-like behaviors in young adult rats compared to those in untreated animals. Furthermore, the amelioration in autistic-like behavior was accompanied by a restoration of the balance between E/I activity, especially at the level of synaptic transmission and receptors in synaptosomes. These findings indicated that LF-rTMS may alleviate the symptoms of ASD-like behaviors caused by neonatal isolation through regulating the synaptic GABA transmission, suggesting that LF-rTMS may be a potential therapeutic technique to treat ASD.
Methods for the study of the metabolism of radiolabeled monoclonal antibodies by liver and tumor. (1987)

Methods for elucidating the mechanisms by which radiolabeled antibodies are taken up and accumulated in tumor and liver are reviewed. These include the use of isolated perfused rat livers, RES blockade using dextran sulfate, single and double labeled antibodies, micropore chambers for the accumulation of the interstitial fluid, and in vitro tissue culture studies of antibody metabolism. Each method has its utility, examples of which will be discussed along with the methods' limitations. All of the methods have value in furthering our understanding of the metabolism of monoclonal antibodies both in vivo and in vitro. Use of these procedures to create a greater understanding of radiolabeled antibody metabolism, hopefully, will result in improved clinically useful agents for diagnosis and therapy.
Packaging of Gold Particles in Viral Capsids (2005)

In-vitro self-assembly conditions known to result in generating infectious virions have been used in vitro to reassemble bromovirus capsid proteins around negatively charged gold nanoparticles cores. We discuss here the optical properties (elastic light scattering) and the influence of the core size and of the functional moiety on the resulting virus-like particles. Our results indicate that the formation of a closed shell, as opposed to an amorphous protein coat, does occur and that the shell/core interactions can be tuned using different coatings on the nanoparticle core. Such studies may lead to real-time monitoring of viral traffic on the scale of a single virus, as well as to the possibility of chemical sensing along the intracellular and intercellular viral pathways and contribute to a better understanding of the virus transport and cellular compartmentalization.
Tissue Specific and Inducible Expression of Resveratrol Synthase Gene in Peanut Plants (2001)

The expression of resveratrol synthase (RS) genes is induced by biotic and abiotic factors in peanut cell cultures. However, little is known about the regulation of the RS gene expression in peanut plants. The expression of RS genes was investigated in peanut plants with a peanut RS clone, pPRS3C, which encodes two polypeptides that show about a 96% amino acid sequence identity to peanut RS2 and RS3, respectively. A low level of RS mRNA was detected in the roots of peanut plants grown aseptically in vitro. In mature peanut plants that were grown in the field, however, RS mRNAs were present at relatively high levels in both the roots and pods, but at below the detection limit in leaves. RS mRNAs were abundant in young pods and decreased dramatically in mature pods. The RS mRNA expression was induced by yeast extract and UV in leaves and roots, and also by wounding in leaves. Stress hormones, such as ethylene, jasmonic acid, and salicylic acid, induced RS mRNA accumulation in leaves. These results indicate that the RS gene expression is induced by biotic and abiotic stresses through the stress hormones in peanut plants. The induction of the RS gene expression by biotic and abiotic stresses could provide peanut plants with protection from microbial infections through resveratrol synthesis. The RS gene expression in developing pods has significant implications in terms of the role of resveratrol as a phytochemical for human health.