gebhart/patrepeval huggingface dataset:
Interactions between material processing and surgery (1982)

The present use of laser in surgery may be improved by modifications learned from similar processes in industrial applications. One of the major problems in materials processing is minimizing heat diffusion from the site of laser exposure. The same problem exists in surgical tissue cutting with a CO2 laser. A proposal is made to use short duration pulses less than the thermal relaxation time of water (one microsecond) to minimize thermal diffusion, and also take advantage of the large heat removed by the phase change in water into steam. An examination of this proposal suggests that many short pulses are preferable to a single long duration exposure to make deep cuts, and that more delicate surgery may be possible with such types of energy delivery. Other typos of materials processing situations are related to surgical situations where the desired relative depth of absorption of each of the absorbers present can be selected by use of the proper wavelength and exposure duration.
Binding of Iron by Cellulose, Lignin, Sodium Phytate and Beta‐Glucan, Alone and in Combination, Under Simulated Gastrointestinal pH Conditions (1984)

ABSTRACT Cellulose (Ce), Lignin (L), Na phytate (P) and beta‐glucan (G), alone, and in combination, were evaluated as to their effect on iron profiles in model systems containing FeSO 4 • 7H 2 O under simulated gastrointestinal pH conditions. Both cellulose and lignin alone, were found to bind a high percentage of the iron in an insoluble form at pH 5.7±0.4 and pH 6.6±0.1, but less at pH 2.0±0.1. However, in the presence of other model components, cellulose unlike lignin had a minimal effect on total binding at all pH levels. Na phytate, alone, formed soluble complexes at all pH levels and when added to lignin led to the solubiization of some of the iron bound to lignin. Beta‐glucan formed soluble iron complexes, which appeared to have a low binding strength with iron.
Hormonal regulation of chimeric genes containing the phosphoenolpyruvate carboxykinase promoter regulatory region in hepatoma cells infected by murine retroviruses. (1988)

Hepatoma cells were infected with replication-incompetent murine retroviruses containing the selectable gene for amino-3'-glycosyl phosphotransferase (neo) and/or the nonselectable gene for bovine growth hormone (bGH). Expression of these genes was controlled by the promoter regulatory region of the gene for the cytosolic form of phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) (PEPCK) from the rat, which contains hormone and tissue-specific regulatory elements. Expression of the transduced PEPCK-neo gene was stimulated by Bt2cAMP and glucocorticoids and inhibited by insulin. The amount of RNA which initiated within the retroviral 5' long terminal repeat (5' LTR) was inhibited when internal promoters were present in the retroviral vector. When no internal promoter was present, expression from the 5' LTR was higher and stimulated by glucocorticoids, due to the presence of a glucocorticoid regulatory element in the 5' LTR. Infection of cells with retroviruses altered the basal expression and hormonal regulation of the endogenous PEPCK gene, but had no effect on the expression of the tyrosine aminotransferase gene, which is regulated in a similar manner by cAMP and glucocorticoids. A segment of the PEPCK promoter acted as a hormonally regulated enhancer, bringing the SV40 early promoter under the control of Bt2cAMP. A second, nonselectable gene (PEPCK-bGH), contained in the retroviral vector together with PEPCK-neo, was expressed and regulated appropriately when introduced into hepatoma cells. The proviruses were initially integrated randomly into the host cell genome, but after prolonged selection for expression of the transduced PEPCK-neo gene, cells were selected which contain a predominant site(s) of integration. Among populations of cells, however, the predominant site(s) of proviral integration was different. The selection of cells with a specific site of integration from a population was accelerated by the presence of PEPCK promoter sequences in the provirus. Despite the need to better characterize their effects on the host cell, retroviruses appear to be versatile tools for the specific introduction of regulated genes into cells.
Altered localisation of the copper efflux transporters ATP7A and ATP7B associated with cisplatin resistance in human ovarian carcinoma cells (2008)

Our results indicate that alterations in sub cellular localisation of transport proteins may contribute to cisplatin resistance in vitro. Investigation of intracellular protein localisation in primary tumour cell cultures and tumour tissues may help to develop markers of clinically relevant cisplatin resistance. Detection of resistant tumours in patients may in turn enable individualization of the chemotherapy in the early stage of treatment.
Differential Protein Expression in Phenotypic Variants of <i>Streptococcus pneumoniae</i> (2000)

Streptococcus pneumoniae undergoes spontaneous phase variation resulting in opaque and transparent colony forms. Differences in colony opacity correlate with differences in virulence: the transparent variants are more capable of colonizing the nasopharynx, whereas the opaque variants show increased virulence during systemic infections. To gain insight into the pathogenesis of pneumococcal disease at the molecular level, protein expression patterns of the phenotypic variants of two pneumococcal strains were compared by high-resolution two-dimensional protein electrophoresis. In comparison with transparent variants, the opaque variants reduced the expression of two proteins and overexpressed one protein. The proteins were identified by mass spectrometric analysis. The protein overexpressed in the opaque phenotype revealed significant homology to elongation factor Ts of Helicobacter pylori. One of the two proteins that were underexpressed in the opaque variants revealed significant homology to the proteinase maturation protein PrtM of Lactocobacillus paracasei, a member of the family of peptidyl-prolyl cis/trans isomerases. A consensus lipoprotein signal sequence suggests that the putative proteinase maturation protein A, designated PpmA, is located at the surface of the pneumococcus and may play a role in the maturation of surface or secreted proteins. The second underexpressed protein was identified as pyruvate oxidase, SpxB. The lower SpxB expression in opaque variants most probably explains the reduced production of hydrogen peroxide, a reaction product of SpxB, in this variant. Since a spxB-defective pneumococcal mutant has decreased ability to colonize the nasopharynx (B. Spellerberg, D. R. Cundell, J. Sandros, B. J. Pearce, I. Idanpaan-Heikkila, C. Rosenow, and H. R. Masure, 1996. Mol. Microbiol. 19:803-813, 1996), our data suggest that SpxB plays an important role in enhancing the ability of transparent variants to efficiently colonize the nasopharynx.
Effect of plasmid backbone modification by different human CpG motifs on the immunogenicity of DNA vaccine vectors (2005)

DNA vaccines, in general, have been found to be poorly immunogenic in nonhuman primates and humans as compared with mice. As the immunogenicity of DNA plasmids relies, to a large extent, on the presence of CpG motifs as built in adjuvants, we addressed the issue of poor immunogenicity by inserting recently identified CpG oligonucleotides (ODN) optimal for human (K-type or D-type CpG ODN) into the backbone of plasmid VR1020. We found that plasmid DNA containing K-type CpG motifs or D-type CpG motifs significantly enhanced the up-regulation of surface molecules and production of interleukin-6 from human peripheral blood mononuclear cells (PBMC) and stimulated monocytes to develop into functionally mature dendritic cells (DC) compared with unmodified plasmid. Monocyte maturation into DC was through plasmacytoid DC present in the culture. It is interesting that the K-type CpG motif-modified plasmid stimulated significant levels of interferon (IFN)-gamma and IFN-alpha from human PBMC. Immunization of mice with D-type CpG motif-modified plasmid, encoding Plasmodium falciparum surface protein 25, yielded enhanced antigen-specific antibodies. Taken together, these results suggest that insertion of immunomodulatory human CpG motifs into plasmid DNA can improve immunogenicity of DNA vaccines.
Chemical and Biochemical Analysis Using Scanning Force Microscopy (1999)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTChemical and Biochemical Analysis Using Scanning Force MicroscopyHajime Takano, Jeremy R. Kenseth, Sze-Shun Wong, Janese C. O'Brie, and Marc D. PorterView Author Information Ames LaboratoryUSDOE, Microanalytical Instrumentation Center, and Department of Chemistry, Iowa State University, Ames, Iowa 50011 Cite this: Chem. Rev. 1999, 99, 10, 2845–2890Publication Date (Web):September 4, 1999Publication History Received24 February 1999Revised3 June 1999Published online4 September 1999Published inissue 13 October 1999https://pubs.acs.org/doi/10.1021/cr9801317https://doi.org/10.1021/cr9801317research-articleACS PublicationsCopyright © 1999 American Chemical SocietyRequest reuse permissionsArticle Views1706Altmetric-Citations229LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose SUBJECTS:Friction,Gold,Layers,Monolayers,Surface interactions Get e-Alerts
Adeno-Associated Virus Type 12 (AAV12): a Novel AAV Serotype with Sialic Acid- and Heparan Sulfate Proteoglycan-Independent Transduction Activity (2007)

Recombinant adeno-associated virus (rAAV) is a promising vector for gene therapy. Recent isolations of novel AAV serotypes have led to significant advances by broadening the tropism and increasing the efficiency of gene transfer to the desired target cell. However, a major concern that remains is the strong preexisting immune responses to several vectors. In this paper, we describe the isolation and characterization of AAV12, an AAV serotype with unique biological and immunological properties. In contrast to those of all other reported AAVs, AAV12 cell attachment and transduction do not require cell surface sialic acids or heparan sulfate proteoglycans. Furthermore, rAAV12 is resistant to neutralization by circulating antibodies from human serum. The feasibility of rAAV12 as a vector was demonstrated in a mouse model in which muscle and salivary glands were transduced. These characteristics make rAAV12 an interesting candidate for gene transfer applications.
Rosella: A fluorescent pH-biosensor for reporting vacuolar turnover of cytosol and organelles in yeast (2008)

We have developed a method for monitoring autophagy using Rosella, a biosensor comprised of a fast-maturing pH-stable red fluorescent protein fused to a pH-sensitive green fluorescent protein variant. Its mode of action relies upon differences in pH between different cellular compartments and the vacuole. Here we demonstrate its utility in yeast (Saccharomyces cerevisiae) by expression in the cytosol, and targeting to mitochondria or to the nucleus. When cells were cultured in nitrogen depleted medium, uptake of the compartment labelled with the biosensor (i.e., cytosol, mitochondria, or nucleus) into the vacuole was observed. We showed that this vacuolar uptake was, for cytosol and mitochondria, an ATG8-dependent process while the uptake of the nucleus was significantly reduced in the absence of Atg8p and can be said to be partially ATG8-dependent. We further demonstrated the value of the biosensor as a reporter of autophagy by employing fluorescence-activated cell sorting of discrete populations of cells undergoing autophagy.
Radioprotective and In-Vitro Cytotoxic Sapogenin from Euphorbia neriifolia (Euphorbiaceae) Leaf (2010)

Purpose: Euphorbia neriifolia Linn. (Euphorbiaceae) plant is traditionally used in the treatment of abdominal troubles, bronchitis, tumours, leucoderma, piles, inflammation, and enlargement of spleen. The objective of this study was to evaluate the antioxidant and anticancer activities of a sapogenin isolate of this plant. Methods: Euphol was isolated as a major constituent from the triterpenoidal sapogenin fraction of E. neriifolia leaf. Its in-vitro antioxidant activity was evaluated by reducing power assay, 1,1 – diphenyl –2- picryl hydrazyl (DPPH) assay, as well as hydroxyl radical and superoxide radical scavenging activities. Radioprotective activity was assessed against radiation-induced chromosomal aberrations and cytotoxicity on murine F1 B16 melanoma.Results: The sapogenin exerted moderate antioxidant activity with highly significant (p < 0.001) reduction of gamma radiation-induced chromosomal aberrations (33.5 % compared to 71.5 % for radiation treatment alone at 4 Gy). It also exhibited cytotoxic activity on melanoma cell lines (IC50 = 173.78 μg/ml). Conclusion: The sapogenin fraction showed antioxidant, radioprotective and cytotoxic activities. This study provides a scientific basis for the claimed traditional anticarcinogenic potentials of E. neriifolia.Keywords: Euphorbia neriifolia; Euphol; Sapogenin; Antioxidant; Radioprotective; Melanoma; Chromosomal aberration
Neoplastic transformation of mouse mammary epithelial cells by in vitro exposure to N-methyl-N-nitrosourea. (1988)

High-efficiency neoplastic transformation of mouse mammary epithelial cells in primary collagen gel culture was induced by N-methyl-N-nitrosourea (MNU). Mammary epithelial cells, isolated from virgin BALB/c mice, were embedded within collagen gels and grown in a serum-free medium containing prolactin, progesterone, and linoleic acid. The cells were then treated with MNU on day 3 of culture and subsequently at weekly intervals for up to 4 weeks. Eleven to 14 days after the final carcinogen treatment, the cells were removed from the collagen gels and injected into the cleared mammary fat pads of syngeneic hosts to assay for transformed cell populations. A single exposure or multiple exposures of these cells to MNU was effective in inducing tumorigenic cells that produced palpable tumors as early as 6 weeks after transplantation. Two treatments with MNU (100 micrograms/ml) were optimal for neoplastic transformation and produced tumors in 79% of the injected fat pads. All the tumors originated at the site of injection and had extensive central necroses. Histological examination indicated that the tumors were mammary carcinomas. Secondary transplantation of tumor pieces into intact mammary glands produced palpable carcinomas of the same histology within 1-8 weeks. Control cells cultured for the same periods of time as MNU-treated cells produced only ductal outgrowths that were morphologically similar to those found in the mammary glands of adult virgin hosts. This system provides a distinct means to study the mechanism of mammary neoplastic transformation at cellular and molecular levels.
X-ray optical units made of glass: achievements and perspectives (2014)

Future X-ray telescopes with very large collecting area, like the proposed Athena with more than 2 m2 effective area at 1 keV, need to be realized as assemblies of a large number of X-ray optical units, named X-ray Optical Units (XOUs). The Brera Astronomical Observatory (INAF-OAB) is developing a new technology to manufacture these modular elements, compatible with an angular resolution of 5 arcsec HEW (Half-Energy-Width). This technique consists in stacking in a Wolter-I configuration several layers of thin foils of glass, previously formed by direct hot slumping. The achievable global angular resolution of the optics relies on the required surface shape accuracy of slumped foils, on the smoothness of the mirror surfaces and on the correct integration and co-alignment of the mirror segments operated trough a dedicated Integration Machine (IMA). In this paper we provide an overview of the project development, reporting on the very promising results achieved so far, including in-focus full illumination X-ray tests of the prototype (Proof of Concept, POC#2, integrated at the beginning of 2013) for which an HEW of 22.1’’ has been measured at Panter/MPE. Moreover we report on the on-going activities, with a new integrated prototype (PoC#3). X-ray test in pencil beam revealed that at least a segment between two external ribs is characterized by an HEW well below 10’’. Lastly, the overall process up-grade to go from 20 m to 12m focal length (to be compatible with Athena+ configuration) is presented.
A second signal for T cell mitogenesis provided by monoclonal antibodies CD45 (T200) (1987)

The induction of T cell mitogenesis through CD3 is a complex process that requires at least two signals. The first one can be provided by Sepharose-bound CD3. The second one is normally provided by monocytes. The signal provided by Sepharose-bound CD3 is unable by itself to induce mitogenesis in monocyte highly depleted cells (MHDC). We describe here that the monoclonal antibody (mAb) 72-5D3 belonging to CD45 (T200), which was not mitogenic by itself, could replace monocytes when MHDC were activated by Sepharose-bound CD3. That is to say, in the absence of monocytes, mAb 72-5D3 gave a second signal necessary for T cell proliferation. Using eleven anti-CD45 mAb from other investigators we show that this effect is not a peculiar characteristic of 72-5D3 mAb. The effect of the mAb 72-5D3 was only effective in CD4-positive cells and was not observed when MHDC were activated with either soluble CD3 or concanavalin A. As both phorbol myristate acetate and mAb 72-5D3 can replace monocytes, a comparative study of their effects was undertaken. Phorbol myristate acetate but not mAb 72-5D3 induced proliferation of MHDC when recombinant interleukin 2 (rIL2) was added. On the other hand mAb 72-5D3 induced IL2 production in MHDC activated by Sepharose-bound CD3 and increased the IL2 production in Sepharose-bound CD3-activated peripheral blood mononuclear cells. In conclusion, data presented in this report indicate that the T200 molecule could be involved in T cell proliferation by giving a signal that induces the production of IL2 and bypasses the necessity of monocytes.
Receiver-initiated group membership protocol (RGMP): A new group management protocol for IP multicasting (2005)

Internet multicast is an important networked service for many existing and emerging applications. The dominant mechanism for group management of IP multicasting is the Internet group management protocol (IGMP). IGMP is based on a query/reply model and refreshes group membership periodically. IGMP has been evolving through three versions. IGMP v1 develops the basis of the query/reply group management model and suppression mechanism, IGMP v2 reduces leave latency that IGMP v1 suffers from, and IGMP v3 adds the capability of source filtering but removes the suppression mechanism of IGMP v1/v2. In this paper, a new group management protocol called receiver-initiated group membership protocol (RGMP) is proposed. Both source filtering and membership report suppression are supported. An RGMP host actively refreshes group membership in the neighboring multicast routers. No querier, and hence no query messages and timers, is required for periodically probing the presence of known groups. An individual host maintains a refresh timer per group. The refresh timer is reset once the suppression rule holds for a received report message, where the report may be a join, leave, state change, or a periodical refresh message. The receiver-initiated, self-synchronized refresh timer makes the RGMP suppression mechanism superior to that of IGMP v1/v2, which applies only for periodical refresh report message. As a result, the protocol overhead compared to IGMP v3 is significantly reduced, over a wide variety of service scenarios. In addition to reduced protocol overhead, RGMP is robust, scalable and adaptive to serve as a group management protocol.
siRNA Interference with a Proliferation-Inducing Ligand Gene in the Sgr-7901 Gastric Carcinoma Cell Line (2012)

APRIL gene silencing can increase the apoptotic rate of gastric carcinoma cells, and inhibit the expression of receptor trka genes. There is a correlation between the signaling pathways of APRIL and trka.
Ozone production by nanoporous dielectric barrier glow discharge in atmospheric pressure air (2008)

This study is aimed at demonstrating plasma-chemical ozone production based on low temperature atmospheric pressure glow discharge through nanoporous dielectric barriers. The 20kHz ac driven discharge is formed in air or oxygen gas flowing in the axial direction of the cylindrical plasma reactor containing four parallel aluminum rods covered with nanoporous alumina films. The discharge utilizing nanoporous dielectric barrier is more uniform and more energy efficient in ozone generation than the discharge through smooth-surface dielectric barriers.
Retinoic acid and neurotrophins collaborate to regulate neurogenesis in adult-derived neural stem cell cultures (1999)

The adult rat hippocampus contains fibroblast growth factor 2-responsive stem cells that are self-renewing and have the ability to generate both neurons and glia in vitro, but little is known about the molecular events that regulate stem cell differentiation. Hippocampus-derived stem cell clones were used to examine the effects of retinoic acid (RA) on neuronal differentiation. Exposure to RA caused an immediate up-regulation of NeuroD, increased p21 expression, and concurrent exit from cell cycle. These changes were accompanied by a threefold increase in the number of cells differentiating into immature neurons. An accompanying effect of RA was to sustain or up-regulate trkA, trkB, trkC, and p75NGFR expression. Without RA treatment, cells were minimally responsive to neurotrophins (NTs), whereas the sequential application of RA followed by brain-derived neurotrophic factor or NT-3 led to a significant increase in neurons displaying mature y-a-minobutyric acid, acetylcholinesterase, tyrosine hydroxylase, or calbindin phenotypes. Although NTs promoted maturation, they had little effect on the total number of neurons generated, suggesting that RA and neurotrophins acted at distinct stages in neurogenesis. RA first promoted the acquisition of a neuronal fate, and NTs subsequently enhanced maturation by way of RA-dependent expression of the Trk receptors. In combination, these sequential effects were sufficient to stimulate stem cell-derived progenitors to differentiate into neurons displaying a variety of transmitter phenotypes.