gebhart/patrepeval huggingface dataset:
Focusing by electrical modulation of refraction in a liquid crystal cell (1984)

The creation of a field-controlled variation of the index of refraction in a liquid crystal cell has been analyzed and experimentally verified. To obtain a spherical lens utilizing a simple electrode structure and capable of focusing arbitrary incoming polarizations requires four flat nematic liquid crystal cells. With electrodes fabricated well within the current capability of photolithography, near diffraction-limited performance in terms of the optical transfer function is predicted. The focusing capability of a liquid crystal lens was demonstrated using a single cell with linear transparent electrodes. A plano-convex cylindrical lens for a single incoming polarization was thus created. While the cell had a crude electrode structure, it affirmed all the major qualitative predictions. The fringing along the edge of the electrodes required for eventually obtaining near diffraction-limited performance was observed.
Physiologic weight‐bearing increases new vessel formation during distraction osteogenesis: A micro‐tomographic imaging study (2003)

During distraction osteogenesis, large volumes of new bone are formed through the slow distraction of fracture callus. The newly formed bone is closely linked to angiogenesis and positively influenced by physiologic loading. In this study, a rat model was used to explore the correlation between these two observations. Unilateral femoral lengthenings were performed in 18 male Sprague-Dawley rats (400-500 g, age<6 months). Half of the animals were allowed to bear weight freely (WB) while the remaining animals were made non-weight-bearing via a through-knee amputation (NWB). After a seven-day latency period, femurs were lengthened 7 mm over 21 days. Animals were sacrificed at 7, 21, 35, and 49 days (0, 4.7, 7, and 7 mm of distraction) at which time lower extremity vessels were perfused with a 60% (w/v) barium sulfate suspension. High-resolution three-dimensional images of the vascular architecture were generated using a fan-beam micro-tomography machine by digitally separating the contrast-filled vessels from surrounding tissue. For two subvolumes, VOI(1), which included vessels in the medullary canal, cortex, and periosteum, and VOI(2), which included only vessels in the canal and cortex, the total tissue volume (TV), the volume of vessels (VV), and vessel diameter (VD) were determined. For the larger subvolume (VOI(1)), VV and vessel density (VV/TV) increased as a function of time (p<0.001) in WB animals. In NWB animals, VV increased significantly with time (p=0.029), while VV/TV did not (p=0.36). Increases in VV and VV/TV were significantly greater in WB animals than in NWB animals (p<0.01 and 0.05, respectively). VD was similar in both groups and did not change with time. Our data suggest that weight bearing stimulates new vessel formation during distraction osteogenesis.
Isolation and Characterization of Multipotent Progenitor Cells from the Bowman’s Capsule of Adult Human Kidneys (2006)

Regenerative medicine represents a critical clinical goal for patients with ESRD, but the identification of renal adult multipotent progenitor cells has remained elusive. It is demonstrated that in human adult kidneys, a subset of parietal epithelial cells (PEC) in the Bowman's capsule exhibit coexpression of the stem cell markers CD24 and CD133 and of the stem cell-specific transcription factors Oct-4 and BmI-1, in the absence of lineage-specific markers. This CD24+CD133+ PEC population, which could be purified from cultured capsulated glomeruli, revealed self-renewal potential and a high cloning efficiency. Under appropriate culture conditions, individual clones of CD24+CD133+ PEC could be induced to generate mature, functional, tubular cells with phenotypic features of proximal and/or distal tubules, osteogenic cells, adipocytes, and cells that exhibited phenotypic and functional features of neuronal cells. The injection of CD24+CD133+ PEC but not of CD24-CD133- renal cells into SCID mice that had acute renal failure resulted in the regeneration of tubular structures of different portions of the nephron. More important, treatment of acute renal failure with CD24+CD133+ PEC significantly ameliorated the morphologic and functional kidney damage. This study demonstrates the existence and provides the characterization of a population of resident multipotent progenitor cells in adult human glomeruli, potentially opening new avenues for the development of regenerative medicine in patients who have renal diseases.
Review of the cosolvency models for predicting solubility of drugs in water-cosolvent mixtures (2008)

The cosolvency models presented from 1960 to 2007 were reviewed and their accuracies for correlating and/or predicting the solubility of drugs in water-cosolvent mixtures were discussed. The cosolvency models could be divided into theoretical, semi-empirical and empirical models, the first group of models provide basic information from the solution, while the last group of models are good suitable for solubility correlation studies. The simplest cosolvency model, i.e. the log-linear model of Yalkowsky, provides an estimate of drug solubility in water-cosolvent mixtures using aqueous solubility of the drug, whereas the Jouyban-Acree model predicts the solubility with an acceptable error with the cost of one more data point (the solubility in neat cosolvent) which is required as input value in the prediction process. A number of error terms used in the literature was also discussed with a brief comments on the acceptable prediction error for pharmaceutical applications.
Conformations of variably linked chimeric proteins evaluated by synchrotron X‐ray small‐angle scattering (2004)

We constructed chimeric proteins that consist of two green fluorescent protein variants, EBFP and EGFP, connected by flexible linkers, (GGGGS)n (n = 3 approximately 4), and helical linkers, (EAAAK)n (n = 2 approximately 5). The conformations of the chimeric proteins with the various linkers were evaluated using small-angle X-ray scattering (SAXS). The SAXS experiments showed that introducing the short helical linkers (n = 2 approximately 3) causes multimerization, while the longer linkers (n = 4 approximately 5) solvate monomeric chimeric proteins. With the moderate-length linkers (n = 4), the observed radius of gyration (R(g)) and maximum dimension (D(max)) were 38.8 A and 120 A with the flexible linker, and 40.2 A and 130 A with the helical linker, respectively. The chimeric protein with the helical linker assumed a more elongated conformation as compared to that with the flexible linker. When the length of the helical linker increased (n = 5), R(g) and D(max) increased to 43.2 A and 140 A, respectively. These results suggest that the longer helix effectively separates the two domains of the chimeric protein. Considering the connectivity of the backbone peptide of the protein, the helical linker seems to connect the two domains diagonally. Surprisingly, the chimeric proteins with the flexible linker exhibited an elongated conformation, rather than the most compact side-by-side conformation expected from the fluorescence resonance energy transfer (FRET) analysis. Furthermore, the SAXS analyses suggest that destabilization of the short helical linker causes multimerization of the chimeric proteins. Information about the global conformation of the chimeric protein is thus be necessary for optimization of the linker design.
The Use of Airborne Ultrasonics for Generating Audible Sound Beams (1999)

A device known as a parametric array employs the nonlinearity of the air to create audible sound from inaudible ultrasound, resulting in an extremely directive, beamlike wide-band acoustical source. This source can be projected about an area much like a spotlight, and creates an actual spatialized sound distant from the transducer. A basic theoretical analysis of the airborne parametric array is outlined and verified experimentally, and future challenges are discussed.
Testosterone solid lipid microparticles for transdermal drug delivery. Formulation and physicochemical characterization (2007)

The developed TS SLM delivery system seemed to be promising as a TS transdermal delivery system.
A 32nm SoC platform technology with 2&lt;sup&gt;nd&lt;/sup&gt; generation high-k/metal gate transistors optimized for ultra low power, high performance, and high density product applications (2009)

A leading edge 32nm high-k/metal gate transistor technology has been optimized for SoC platform applications that span a wide range of power, performance, and feature space. This technology has been developed to be modular, offering mix-and-match transistors, interconnects, RF/analog passive elements, embedded memory, and noise mitigation options. The low gate leakage of the high-k gate dielectric enables the triple transistor architecture to support ultra low power, high performance, and high voltage tolerant I/O devices concurrently. Embedded memories include high density (0.148 um <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> ) and low voltage (0.171 um <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> ) SRAMs as well as secure OTP fuses. Analog/RF SoC features include high precision, high quality passives (resistors, capacitors and inductors) and deep-nwell noise isolation.
Retinoid pathway and cancer therapeutics (2010)

The retinoids are a class of compounds that are structurally related to vitamin A. Retinoic acid, which is the active metabolite of retinol, regulates a wide range of biological processes including development, differentiation, proliferation, and apoptosis. Retinoids exert their effects through a variety of binding proteins including cellular retinol-binding protein (CRBP), retinol-binding proteins (RBP), cellular retinoic acid-binding protein (CRABP), and nuclear receptors i.e. retinoic acid receptor (RAR) and retinoid x receptor (RXR). Because of the pleiotropic effects of retinoids, understanding the function of these binding proteins and nuclear receptors assists us in developing compounds that have specific effects. This review summarizes our current understanding of how retinoids are processed and act with an emphasis on the application of retinoids in cancer treatment and prevention.
The Effect of Sildenafil on Pulmonary Embolism-Induced Oxidative Stress and Pulmonary Hypertension (2005)

Acute pulmonary embolism (APE) is a major cause of pulmonary hypertension and death. We examined the effects of sildenafil on the hemodynamic changes caused by APE in anesthetized dogs. Sham-operated dogs (n = 3) received only saline. APE was induced by stepwise IV injections of 300 mum microspheres in amounts adjusted to increase mean pulmonary artery pressures by 20 mm Hg. Hemodynamic evaluation was performed at baseline, after APE was induced, and then after sildenafil 0.25 mg/kg (n = 8), or sildenafil 1 mg/kg + 0.3 mg . kg(-1) . h(-1) (n = 8) or saline (n = 9) infusions were started. Similar experiments were conducted to examine the effects of sildenafil in rat isolated perfused lung preparation. Plasma thiobarbituric acid reactive species were also determined in both studies to measure oxidative stress. Both doses of sildenafil reduced mean pulmonary artery pressures in dogs by approximately 8 to 16 mm Hg (both P < 0.05) and attenuated the increase in oxidative stress after APE. Mean arterial blood pressure remained unaltered after both doses of sildenafil. Sildenafil produced similar effects after APE in rat isolated perfused lung preparation. These findings indicate that IV sildenafil can selectively attenuate the increases in mean pulmonary artery pressures after APE, possibly through antioxidant mechanisms.
Structure of the bovine eye lens protein γB(γII)-crystallin at 1.47 Å (1993)

The molecular structure of calf gammaB-crystallin (previously called gammaII), a lens-specific protein, has been refined to a crystallographic R factor of 18.1% for all reflection data, between 8.0 and 1.47 A, 25 959 hkl measured at 293 (1) K. 230 water molecules have been defined by difference Fourier techniques and included in a restrained least-squares refinement. Difference Fourier maps clearly indicated the presence of multiple sites for the sulfur atoms of Cys 18 and Cys 22 which were therefore given coupled second-site occupancies during the refinement. The sulfur atom in the major position of Cys 22 is in the reduced state. Either of the Cys 18 sites can form a high-energy disulfide bridge with the minor position of Cys 22. The position of the carboxy terminus and many other surface side chains have been further defined including the RGD signal peptide. The hydration of the backbone and the interdomain region has been analysed. 27 water molecules make extensive contacts to a single protein molecule and thus contribute to its stability.
A Water-Powered Micro Drug Delivery System (2004)

A plastic micro drug delivery system has been successfully demonstrated by utilizing the principle of osmosis without any electrical power consumption. The system has an osmotic microactuator (see Su, Lin, and Pisano, J. Microelectromech., vol. 11, pp. 736-7462, Dec. 2002) and a polydimethylsiloxane (PDMS) microfluidic cover compartment consisting of a reservoir, a microfluidic channel and a delivery port. The typical dimension of the microfluidic channel is 1 cm in length with a cross-sectional area of 30/spl times/100 /spl mu/m/sup 2/ to minimize the diffusive drug flow while pressure drop remains moderate. Using oxygen plasma to activate the surfaces of polymers for bonding, the osmotic actuator is bonded with the PDMS cover while liquid drug can be encapsulated during the bonding process. Employing the net water flow induced by osmosis, the prototype drug delivery system has a measured constant delivery rate at 0.2 /spl mu/L/h for 10 h with an accumulated delivery volume of 2 /spl mu/L. Both the delivery rate and volume could be altered by changing the design and process parameters for specific drug delivery applications up to a few years. Moreover, the induced osmotic pressure can be as high as 25 MPa to overcome possible blockages caused by cells or tissues during drug delivery operations.
Redesigning Escherichia coli Metabolism for Anaerobic Production of Isobutanol (2011)

Fermentation enables the production of reduced metabolites, such as the biofuels ethanol and butanol, from fermentable sugars. This work demonstrates a general approach for designing and constructing a production host that uses a heterologous pathway as an obligately fermentative pathway to produce reduced metabolites, specifically, the biofuel isobutanol. Elementary mode analysis was applied to design an Escherichia coli strain optimized for isobutanol production under strictly anaerobic conditions. The central metabolism of E. coli was decomposed into 38,219 functional, unique, and elementary modes (EMs). The model predictions revealed that during anaerobic growth E. coli cannot produce isobutanol as the sole fermentative product. By deleting 7 chromosomal genes, the total 38,219 EMs were constrained to 12 EMs, 6 of which can produce high yields of isobutanol in a range from 0.29 to 0.41 g isobutanol/g glucose under anaerobic conditions. The remaining 6 EMs rely primarily on the pyruvate dehydrogenase enzyme complex (PDHC) and are typically inhibited under anaerobic conditions. The redesigned E. coli strain was constrained to employ the anaerobic isobutanol pathways through deletion of 7 chromosomal genes, addition of 2 heterologous genes, and overexpression of 5 genes. Here we present the design, construction, and characterization of an isobutanol-producing E. coli strain to illustrate the approach. The model predictions are evaluated in relation to experimental data and strategies proposed to improve anaerobic isobutanol production. We also show that the endogenous alcohol/aldehyde dehydrogenase AdhE is the key enzyme responsible for the production of isobutanol and ethanol under anaerobic conditions. The glycolytic flux can be controlled to regulate the ratio of isobutanol to ethanol production.
Zero-Shot Learning with Semantic Output Codes (2018)

We consider the problem of zero-shot learning, where the goal is to learn a classifier f: X → Y that must predict novel values of Y that were omitted from the training set. To achieve this, we define the notion of a semantic output code classifier (SOC) which utilizes a knowledge base of semantic properties of Y to extrapolate to novel classes. We provide a formalism for this type of classifier and study its theoretical properties in a PAC framework, showing conditions under which the classifier can accurately predict novel classes. As a case study, we build a SOC classifier for a neural decoding task and show that it can often predict words that people are thinking about from functional magnetic resonance images (fMRI) of their neural activity, even without training examples for those words.
External magnet improves antitumor effect of vinblastine and the suppression of metastasis (2009)

The use of magnetic drug targeting (MDT) to selectively deliver chemotherapeutic drugs to tumor cells is a widely investigated approach; however, the notion of targeting tumor endothelial cells by this method is a fairly new concept. Positively-charged (cationic) liposomes have an extraordinarily high affinity for tumor vessels, but heterogeneous targeting is frequently observed. In order to improve on the overall efficiency of targeting tumor vessels, we investigated the use of an externally applied magnetic field together with magnetic cationic liposomes (MCLs) for cancer treatment. We examined the antitumor effect of the chemotherapeutic agent vinblastine loaded in MCLs, using a murine model of melanoma. Two hours following i.v. administration of MCLs, we observed significant tumor vascular uptake with use of an external magnet (15.9 +/- 6.3%) compared to no magnet (5 +/- 1.3%). The administration of vinblastine-loaded MCLs with the magnet produced a significant antitumor effect, reducing the presence of tumor nodules in preferential sites of metastasis compared to untreated and free drug control groups. CD31 immunostaining revealed a decrease in the general length of tumor blood vessels, altered vascular morphology and interruptions in the tumor vascular lining for the vinblastine-loaded MCL groups. Drug-loaded MCLs with magnetic fields may represent a promising combination approach for cancer treatment.
Critical Roles of Phosphorylation and Actin Binding Motifs, but Not the Central Proline-rich Region, for Ena/Vasodilator-stimulated Phosphoprotein (VASP) Function during Cell Migration (2002)

The Ena/vasodilator-stimulated phosphoprotein (VASP) protein family is implicated in the regulation of a number of actin-based cellular processes, including lamellipodial protrusion necessary for whole cell translocation. A growing body of evidence derived largely from in vitro biochemical experiments using purified proteins, cell-free extracts, and pathogen motility has begun to suggest various mechanistic roles for Ena/VASP proteins in the control of actin dynamics. Using complementation of phenotypes in Ena/VASP-deficient cells and overexpression in normal fibroblasts, we have assayed the function of a panel of mutants in one member of this family, Mena, by mutating highly conserved sequence elements found in this protein family. Surprisingly, deletion of sites required for binding of the actin monomer-binding protein profilin, a known ligand of Ena/VASP proteins, has no effect on the ability of Mena to regulate random cell motility. Our analysis revealed two features essential for Ena/VASP function in cell movement, cyclic nucleotide-dependent kinase phosphorylation sites and an F-actin binding motif. Interestingly, expression of the C-terminal EVH2 domain alone is sufficient to complement loss of Ena/VASP function in random cell motility.
Robovie: A robot generates episode chains in our daily life (2015)

We have developed a robot called “Robovie”. A unique aspect of this robot is the mechanism designed for commu-nication. Robovie can generate human-like behaviors with the actuators and sensors. First of all, we have obtained two important results for human-robot communication in cogni-tive science; one is importance of physical expressions using the body and the other is effectiveness of the robot’s auton-omy in robot’s utterance recognition by humans. Based on these psychological experiments, we have designed a new architecture and implemented for generating episode chains in the interactions with humans. The basic structure of the architecture is a network of situated modules. Each module consists of elemental behaviors to entrain humans and a be-havior for communicating with humans.
A weakly-supervised approach for discovering new user intents from search query logs (2013)

State-of-the art spoken language understanding models that automatically capture user intents in human to machine dialogs are trained with manually annotated data, which is cumbersome and time-consuming to prepare. For bootstrapping the learning algorithm that detects relations in natural language queries to a conversational system, one can rely on publicly available knowledge graphs, such as Freebase, and mine corresponding data from the web. In this paper, we present an unsupervised approach to discover new user intents using a novel Bayesian hierarchical graphical model. Our model employs search query click logs to enrich the information extracted from bootstrapped models. We use the clicked URLs as implicit supervision and extend the knowledge graph based on the relational information discovered from this model. The posteriors from the graphical model relate the newly discovered intents with the search queries. These queries are then used as additional training examples to complement the bootstrapped relation detection models. The experimental results demonstrate the effectiveness of this approach, showing extended coverage to new intents without impacting the known intents. Index Terms: spoken language understanding, graphical models, search query click logs, intent discovery.
Overexpression and Activation of the α9-Nicotinic Receptor During Tumorigenesis in Human Breast Epithelial Cells (2010)

The alpha9-nAChR is important for nicotine-induced transformation of normal human breast epithelial cells.