gebhart/patrepeval huggingface dataset:
Functional heterogeneity of the hematopoietic microenvironment: rare stromal elements maintain long-term repopulating stem cells (1996)

It has been hypothesized that distinct stromal cells from niches within the microenvironment that selectively regulate stem cell functions. To test this hypothesis, we derived a panel of matched stromal cell lines from murine fetal liver. The lines were immortalized with a retroviral vector encoding a temperature sensitive SV40 T antigen, to provide a snapshot of potential heterogeneity of the in vivo stroma compartment. All the stromal cell lines tested, supported the proliferation and differentiation of myeloid cells in Dexter type bone marrow cultures. Furthermore, RT-PCR analysis indicates that these lines are similar with respect to the production of an array of cytokines. However, the stromal cell lines differed markedly in their ability to maintain in vitro stem cells with in vivo repopulating capacity. Stem cell levels were measured in the competitive repopulation assay, following 3 weeks of coculture on individual stromal cell lines. Three classes of stromal cell lines were identified: (1) lines that did not support stem cells, (2) lines that sustained low levels of stem cells that often showed limited persistence in vivo, and (3) an infrequent line (1 out of 16 lines tested) that maintained high levels of primitive, long-term repopulating stem cells. This suggests that stromal cells that can support primitive stem cells are rare in the hematopoietic microenvironment. Taken together, these data substantiate the hypothesis that distinct stromal cells interact selectively with stem cells.
Creation of an NADP-dependent pyruvate dehydrogenase multienzyme complex by protein engineering (1993)

Systematic replacement of a set of amino acids in the beta alpha beta-fold of the NAD-binding domain of Escherichia coli dihydrolipoamide dehydrogenase has been used to convert its coenzyme specificity from NAD to NADP. After comparison with the homologous enzyme glutathione reductase, Glu 203 was replaced with a valine residue, thereby eliminating the potential to form hydrogen bonds with the 2'- and 3'-OH groups of the adenine ribose in NAD. Similarly, Met 204, Pro 210, Phe 205, and Asp 206 were replaced by an arginine, an arginine, a lysine, and a histidine residue, respectively, to provide a nest of positive charge to accommodate the 2'-phosphate group of the incoming NADP. In addition, Gly 185 and Gly 189 in the beta alpha beta motif were replaced with alanine residues to facilitate the positioning of the newly introduced Val 203 by allowing a flip of the peptide bond between residues Gly 180 and Gly 181. Wild-type dihydrolipoamide dehydrogenase is inactive with NADP, but the mutant enzyme displayed high levels of activity with this coenzyme, the values of Km, kcat, and kcat/Km comparing favorably with those found for the wild-type enzyme operating with NAD. The mutant enzyme was also capable of assembly in vitro to form an active pyruvate dehydrogenase multienzyme complex, the coenzyme specificity of which reflected that of its dihydrolipoamide dehydrogenase component. These experiments should make it possible now to study the effects in vivo of requiring a crucial catabolic enzyme to function with the wrong coenzyme, an important extension of protein engineering into the living cell.
Roles of AKT1 and AKT2 in non‐small cell lung cancer cell survival, growth, and migration (2011)

Although AKT ⁄ protein kinase B is constitutively active in nonsmall cell lung cancer (NSCLC) cells and is an attractive target for enhancing the cytotoxicity of therapeutic agents, the distinct roles of the AKT isoforms in NSCLC are largely unknown. In the present study, we investigated the roles of AKT1 and AKT2 in NSCLC cells using RNAi. The siRNA targeting of AKT1 or AKT2 effectively decreased protein levels of AKT1 and AKT2, respectively, in A549 and H460 cells. Cisplatin treatment of these cells increased apoptotic cell death compared with control. The siRNA-induced knockdown of AKT1 in H460 cells significantly decreased basal MEK⁄ ERK1 ⁄ 2 activity, resulting in nuclear factor-κB activation, whereas knockdown of AKT2 resulted in anti-apoptotic Bcl-2 family protein MCL-1 (MCL-1) cleavage, the collapse of mitochondrial membrane potential, cytochrome c release, and activation of the caspase cascade. Consequently, both siRNA treatments enhanced the chemosensitivity of H460 cells to cisplatin. However, neither AKT1 nor AKT2 siRNA treatment had any effect of p27 expression, and although both treatments tended to induced G₂ ⁄M phase arrest, the effect was not statistically significant. Treatment with AKT1 siRNA markedly decreased colony formation growth and migration, but AKT2 siRNA had no significant effects on these parameters. These data suggest that AKT1 and AKT2 both contribute to cell survival, albeit via different mechanisms, and that the effects on cell growth and migration are predominantly regulated by AKT1. These findings may aid in refining targeted strategies for the inhibition of AKT isoforms towards the sensitization of NSCLC cells to therapeutic agents.
Adhesion mechanisms of nanoparticle silver to substrate materials: identification (2009)

Nanoparticle silver (NPS) conductors are increasingly being investigated for printed electronics applications. However, the adhesion mechanism of the nanoparticle silver to substrate materials has not been identified yet. In particular, the adhesion of NPS to organic materials such as the widely used polyimide Kapton HN and Kapton FPC dry films is concerned with low adhesion strength because the processed polymer surface is chemically inert. Moreover, its adhesion to substrate materials such as benzocyclobutene (BCB), copper and aluminum was found to be very weak. Therefore, in this paper, the mechanisms of NPS adhesion to organic and inorganic materials are identified as the first step in improving NPS adhesion strength. Improving the adhesion strength of NPS will be the key issue for printed electronics applications. The adhesion of NPS to substrate materials was found to be mainly attributed to van der Waals forces based on particle adhesion mechanisms. This finding provides the initiative of developing an adhesion prediction model of NPS to substrate materials in order to provide guidelines for improving the NPS adhesion strength to the substrate materials used in printed electronics.
Ultra-high efficiency solar cells: the path for mass penetration of solar electricity (2008)

For achieving a photovoltaic penetration above one-third of the world demand for electricity in the first half of this century, the importance of a fast manufacturing learning curve that is linked to the capacity of developing cells of increasing efficiency is stressed. Progress in multijunction cells is described as well as three novel concepts promising very high efficiency. It is explained why these concepts will probably be used in concentrator systems.
Current Approaches to the Management of Hemochromatosis (2006)

The term hemochromatosis encompasses at least four types of genetic iron overload conditions, most of them recently distinguished from one another as a result of the identification of a series of genes related to iron metabolism. At least three of these entities (HFE hemochromatosis, juvenile hemochromatosis and transferrin receptor 2 hemochromatosis) involve systemic hepcidin deficiency as a key pathogenetic factor. Major advances in the management of hemochromatosis influence the diagnostic approach to the disease, with the development of an overall non invasive strategy, mainly based on clinical, biological (iron parameters and genetic testing), and imaging (especially magnetic resonance imaging) data. Therapeutic management remains, on the curative side, dominated by phlebotomy (venesection), practical aspects of which have been recently revisited by the Guidelines Department of the French "Haute Autorité de Santé." However, innovative treatment approaches, based on the improved pathophysiological understanding of these diseases and the progress in iron chelation therapy, are emerging. Preventive therapy, focused on family screening, remains a key part of the management of hemochromatosis.
1997 Volvo Award Winner in Clinical Studies (1997)

Lumbar posterolateral fusion with pedicle screw fixation increases the operation time, blood loss, and reoperation rate, and leads to a significant risk of nerve injury. The functional outcome improves significantly with high patient satisfaction, with or without instrumentation. No significant differences were observed between the two groups in functional outcome and fusion rate. The only gain in functional outcome from instrumentation was found in the daily activity category in patients with supplementary neural decompression. The results of this study do not justify the general use of pedicle screw fixation alone as an adjunct to posterolateral lumbar fusion.
Poly(ethylene glycol)-Grafted Liposome Therapeutics (1997)

PEG-lipid conjugates have been synthesized and incorporated into liposomes to form a steric polymer surface barrier that enhances drug delivery applications. The PEG steric coating reduces protein binding, cellular recognition, and uptake. Thus these liposomes persist in the blood permitting extravasation into tumors, infections, and sites of inflammation. Thus PEG-grafted liposome formulations can deliver encapsulated drugs to these pathological sites, shown with doxorubicin treatment of tumors and Kaposi's Sarcoma. Other drugs are being evaluated as PEG-grafted liposome drug formulations to take advantage of this form of "passive" targeting. Additionally, efforts are being applied to obtain ligand-mediated targeting or ligand presentation through chemical conjugation to the exterior surface of the PEG coating. Improved drug targeting and use for gene therapy, which requires intracellular delivery, are limited by a need to control tissue distribution separately from drug release or cellular interactions.
A new class of biodegradable materials: Poly‐3‐hydroxy‐butyrate/steam exploded straw fiber composites. I. Thermal and impact behavior (1993)

Abstract Biodegradable thermoplastic composites reinforced with wheat straw fibers were prepared. The matrix was an expensive polyester, poly‐3‐hydroxy‐butyrate (PHB), produced by bacterial fermentation. Before being mixed with the PHB, the wheat straw fibers were subjected to a steam explosion process that induces morphological and structural changes in lignocellulosics. Such changes enhance the interaction with the thermoplastic matrix. The two components were melt mixed and the composite molded under hot compression. Compared with neat PHB, not only does the composite material show better mechanical properties but, moreover, production costs are dramatically reduced because wheat straw is a very inexpensive product. Finally, FTIR measurements revealed some PHB/straw fiber molecular interactions that interfere with the PHB crystallization. © 1993 John Wiley &amp; Sons, Inc.
Adeno-Associated Virus (AAV) as a Vector for Gene Therapy (2017)

There has been a resurgence in gene therapy efforts that is partly fueled by the identification and understanding of new gene delivery vectors. Adeno-associated virus (AAV) is a non-enveloped virus that can be engineered to deliver DNA to target cells, and has attracted a significant amount of attention in the field, especially in clinical-stage experimental therapeutic strategies. The ability to generate recombinant AAV particles lacking any viral genes and containing DNA sequences of interest for various therapeutic applications has thus far proven to be one of the safest strategies for gene therapies. This review will provide an overview of some important factors to consider in the use of AAV as a vector for gene therapy.
Micro Phase Shifting (2012)

We consider the problem of shape recovery for real world scenes, where a variety of global illumination (inter-reflections, subsurface scattering, etc.) and illumination defocus effects are present. These effects introduce systematic and often significant errors in the recovered shape. We introduce a structured light technique called Micro Phase Shifting, which overcomes these problems. The key idea is to project sinusoidal patterns with frequencies limited to a narrow, high-frequency band. These patterns produce a set of images over which global illumination and defocus effects remain constant for each point in the scene. This enables high quality reconstructions of scenes which have traditionally been considered hard, using only a small number of images. We also derive theoretical lower bounds on the number of input images needed for phase shifting and show that Micro PS achieves the bound.
Large-Scale Kernel Machines (2007)

Solutions for learning from large scale datasets, including kernel learning algorithms that scale linearly with the volume of the data and experiments carried out on realistically large datasets. Pervasive and networked computers have dramatically reduced the cost of collecting and distributing large datasets. In this context, machine learning algorithms that scale poorly could simply become irrelevant. We need learning algorithms that scale linearly with the volume of the data while maintaining enough statistical efficiency to outperform algorithms that simply process a random subset of the data. This volume offers researchers and engineers practical solutions for learning from large scale datasets, with detailed descriptions of algorithms and experiments carried out on realistically large datasets. At the same time it offers researchers information that can address the relative lack of theoretical grounding for many useful algorithms. After a detailed description of state-of-the-art support vector machine technology, an introduction of the essential concepts discussed in the volume, and a comparison of primal and dual optimization techniques, the book progresses from well-understood techniques to more novel and controversial approaches. Many contributors have made their code and data available online for further experimentation. Topics covered include fast implementations of known algorithms, approximations that are amenable to theoretical guarantees, and algorithms that perform well in practice but are difficult to analyze theoretically. Contributors Léon Bottou, Yoshua Bengio, Stéphane Canu, Eric Cosatto, Olivier Chapelle, Ronan Collobert, Dennis DeCoste, Ramani Duraiswami, Igor Durdanovic, Hans-Peter Graf, Arthur Gretton, Patrick Haffner, Stefanie Jegelka, Stephan Kanthak, S. Sathiya Keerthi, Yann LeCun, Chih-Jen Lin, Gaëlle Loosli, Joaquin Quiñonero-Candela, Carl Edward Rasmussen, Gunnar Rätsch, Vikas Chandrakant Raykar, Konrad Rieck, Vikas Sindhwani, Fabian Sinz, Sören Sonnenburg, Jason Weston, Christopher K. I. Williams, Elad Yom-Tov
pH-Sensitive Nanoaggregates for Site-Specific Drug-Delivery as Well as Cancer Cell Imaging (2016)

Multifunctional polymeric nanoaggregates could enable targeted cancer therapy and imaging, which eventually facilitate monitoring of the therapeutic effect. A fluorescent nanoaggregate is constructed for theranostic application. Chlorambucil (Chl), a fluorescent inactive chemotherapeutic agent, is covalently attached to the nanoaggregate for therapeutic action. The pyrene (Py) motif is also covalently attached to the nanoaggregates, with the motivation of cancer cell imaging. This nanoaggregate is further functionalized with biotin (Btn) for receptor-mediated drug delivery. The efficiency of this system is evaluated by in vitro cell studies to prove its receptor-mediated internalization as well as theranostic capabilities. This newly designed nanocarrier, Nor-Chl-Py-Btn (Nor, norbornene), has the ability to combine both therapeutic and diagnostic capabilities into a single polymer that offers existing prospects for the development of nanomedicine.
Practical camera auto-calibration based on object appearance and motion for traffic scene visual surveillance (2008)

Camera calibration, as a fundamental issue in computer vision, is indispensable in many visual surveillance applications. Firstly, calibrated camera can help to deal with perspective distortion of object appearance on image plane. Secondly, calibrated camera makes it possible to recover metrics from images which are robust to scene or view an gle changes. In addition, with calibrated cameras, we can make use of prior information of 3D models to estimate 3D pose of objects and make object detection or tracking more robust to noise and occlusions. In this paper, we propose an automatic method to recover camera models from traffic scene surveillance videos. With only the camera height H measured, we can completely recover both intrinsic and extrinsic parameters of cameras based on appearance and motion of objects in videos. Experiments are conducted in different scenes and experimental results demonstrate the effectiveness and practicability of our approach, which can be adopted in many traffic scene surveillance applications.
Anti-TNF Therapy and Malignancy – A Critical Review (2001)

The roles of tumour necrosis factor (TNF) and anti-TNF therapy in malignancy are reviewed, including an overview of baseline risk factors for malignancy in inflammatory diseases and the incidences of malignancies observed in clinical trials of an anti-TNF-a therapy, infliximab. The preclinical data and early clinical experience presented for infliximab do not provide evidence for a causal relationship between TNF-a antagonism and the development of lymphoid or nonlymphoid cancers.
Syntheses and photophysical properties of some 5(2)‐aryl‐2(5)‐(4‐pyridyl)oxazoles and related oxadiazoles and furans (1992)

Abstract A number of 5‐aryl‐2‐(4‐pyridyl)oxazoles, a 2‐aryl‐5‐(4‐pyridyl)oxazole, the related oxadiazole and furan, several 2‐(4‐pyridyl)cycloalkano[ d ]oxazoles, and many of their quaternary salts were prepared. No single standard synthesis was effective for preparation of more than a few of the 25 free bases described; methods often unique to a base were employed. Minor variations in structure sometimes produced large differences in absorption and emission wavelengths, as well as in the magnitude of the extinction coefficient. The salts are of interest as laser dyes, scintillation fluors, biological stains, and shifters for luminescent solar concentrators.
How Intestinal Bacteria Cause Disease (1999)

An improved understanding of how intestinal bacteria cause disease has become increasingly important because of the emergence of new enteric pathogens, increasing threats of drug resistance, and a growing awareness of their importance in malnutrition and diarrhea. Reviewed here are the varied ways that intestinal bacteria cause disease, which provide fundamental lessons about microbial pathogenesis as well as cell signaling. Following colonization, enteric pathogens may adhere to or invade the epithelium or may produce secretory exotoxins or cytotoxins. In addition, by direct or indirect effects, they may trigger secondary mediator release of cytokines that attract inflammatory cells, which release further products, such as prostaglandins or platelet-activating factor, which can also trigger secretion. An improved understanding of pathogenesis not only opens new approaches to treatment and control but may also suggest improved simple means of diagnosis and even vaccine development.
The effects of natural and synthetic retinoids on the differentiation of RCJ C5.18 chondrogenic cells (1994)

RCJ C 5.18 (C 5.18) is a chondrogenic clonal cell line which, under standard culture conditions, develops chondroblastic features including the production of a cartilagenous matrix. Retinoic acid (RA) is known to inhibit the chondrogenic differentiation of C 5.18 cells and this may parallel the teratogenic effects of retinoids in vivo; however, the question as to which of the 3 retinoic acid receptors (RAR alpha, beta, gamma) or the 3 retinoid X receptors (RXR alpha, beta, gamma) mediate this RA-induced inhibition remains unanswered. We tested several retinoids with different receptor binding characteristics. Cartilage formation in C 5.18 cultures was evaluated by counting the number of cartilage nodules formed, and by quantitating the glycosaminoglycan content of the cultures using alcian blue staining. All of the retinoids prevented cartilage formation in a dose-dependent manner. Treatment with the retinoids did not affect cell number, thereby ruling out any toxic effects. RA, which binds to all 3 RARs with similar affinity, produced a 50% inhibition (IC50) of cartilage formation at 4 x 10(-10) M. We also tested Ch55, which also binds to all 3 RARs, but with higher affinity than RA. This compound was approximately 10 times more potent than RA (IC50 2 x 10(-11) M). 9-cis RA, which binds to the 3 RARs with affinities similar to RA and also binds to the 3 RXRs, was less active (IC50 8 x 10(-9) M), suggesting that RXR binding interferes with the inhibitory effect of ligand-activated RARs. 9-cis retinal, for which the binding characteristics are unknown, had the same effect as 9-cis RA.(ABSTRACT TRUNCATED AT 250 WORDS)
Next-Generation Optical Technologies for Illuminating Genetically Targeted Brain Circuits (2006)

Emerging technologies from optics, genetics, and bioengineering are being combined for studies of intact neural circuits. The rapid progression of such interdisciplinary "optogenetic" approaches has expanded capabilities for optical imaging and genetic targeting of specific cell types. Here we explore key recent advances that unite optical and genetic approaches, focusing on promising techniques that either allow novel studies of neural dynamics and behavior or provide fresh perspectives on classic model systems.
Spatial Charge Configuration Regulates Nanoparticle Transport and Binding Behavior In Vivo (2012)

Detailed arrangements: A new set of zwitterionic quantum dots were synthesized and used to study the influence of microscopic charge arrangements on the in vivo behavior of nanoparticles. Experiments using cultured cells and live mice demonstrate that the microscopic arrangement of surface charges strongly influences nonspecific binding, clearance behavior, and in vivo transport of nanoparticles. As a service to our authors and readers, this journal provides supporting information supplied by the authors. Such materials are peer reviewed and may be re-organized for online delivery, but are not copy-edited or typeset. Technical support issues arising from supporting information (other than missing files) should be addressed to the authors. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
Glacial striae and former ice movement: the evidence from Assynt, Sutherland (1996)

Synopsis The mapping of an extensive pattern of glacial striae on quartzite bedrock has enabled the reconstruction of basal flow patterns beneath the Late Devensian ice sheet. There is evidence for an earlier phase of ice movement in certain limited localities, believed to relate to ice build-up. Ice flow beneath a thick ice sheet that covered all but the highest parts of the terrain was followed by a phase in which basal flow was strongly influenced by topography. The ice sheet appears to have been warm-based throughout much of its existence.