gebhart/patrepeval huggingface dataset:
Meningococcal phenotypic and genotypic characteristics and human antibody levels (1988)

During a 2-month period in 1984, throat and blood samples were collected from 1,102 healthy persons of different ages living in the city of Tromsø, Norway. One hundred and eight persons (9.8%) were meningococcal carriers, but the carrier rate varied with sex and age. Twenty-nine isolates (26.9%) were of serogroup B, and 31 (28.7%) isolates contained the serotype 15 antigen. Sixty-eight (63.0%) isolates were nontypable, 49 (45.4%) were nongroupable, and 21 (19.4%) were sulfonamide resistant. All nine serotype 2a isolates and eight (25.8%) of the serotype 15 isolates were sulfonamide resistant. Only these eight serotype 15, sulfonamide-resistant isolates had a DNA fingerprint similar to that of the majority of systemic isolates of Neisseria meningitidis in Norway. The average level of antimeningococcal immunoglobulin G antibodies, as determined by a whole-bacterium enzyme immunoassay with a systemic B:15 meningococcal strain as the antigen, was low until 12 to 15 years of age and then steadily increased.
Repeated observation of breast tumor subtypes in independent gene expression data sets (2003)

Characteristic patterns of gene expression measured by DNA microarrays have been used to classify tumors into clinically relevant subgroups. In this study, we have refined the previously defined subtypes of breast tumors that could be distinguished by their distinct patterns of gene expression. A total of 115 malignant breast tumors were analyzed by hierarchical clustering based on patterns of expression of 534 “intrinsic” genes and shown to subdivide into one basal-like, one ERBB2 -overexpressing, two luminal-like, and one normal breast tissue-like subgroup. The genes used for classification were selected based on their similar expression levels between pairs of consecutive samples taken from the same tumor separated by 15 weeks of neoadjuvant treatment. Similar cluster analyses of two published, independent data sets representing different patient cohorts from different laboratories, uncovered some of the same breast cancer subtypes. In the one data set that included information on time to development of distant metastasis, subtypes were associated with significant differences in this clinical feature. By including a group of tumors from BRCA1 carriers in the analysis, we found that this genotype predisposes to the basal tumor subtype. Our results strongly support the idea that many of these breast tumor subtypes represent biologically distinct disease entities.
Pharmacokinetics and tolerability of human mouse chimeric anti-CD22 monoclonal antibody in Chinese patients with CD22-positive non-Hodgkin lymphoma (2012)

The safety and pharmacokinetics assessment of antibodies targeting CD22 (e.g., epratuzumab) have been established in western Caucasian populations, but there are no reports of the effects in Chinese populations. This dose-escalation study examines the safety, pharmacokinetics and biologic effects of multiple doses of anti-CD22 human-murine chimeric monoclonal antibody SM03 in 21 Chinese patients with CD22-positive non-Hodgkin lymphoma. Most of drug-related adverse events (AEs) were mild and reversible. Two patients experienced serious AEs (hemorrhage); one patient had grade 4 neutropenia; one patient had asymptomatic grade III prolongation of activated partial thromboplastin time (APTT). Major AEs included fever (71%), prolongation of APTT (42.8%), leukocytopenia (44.4%), alanine transaminase elevation (28.6%), elevated serum creatinine (23.8%) and injection site skin redness (14.3%). Circulating B cells transiently decreased without significant effects on T cells or immunoglobulin levels. Pharmacokinetic data revealed that mean maximum observed SM03 concentration and mean AUC from time zero to infinity increased in a dose-dependent manner up to 360 mg/m (2) SM03. Mean clearance was similar at doses ≤ 360 mg/m (2) and decreased significantly at dose 480 mg/m (2), supporting saturation of B-cell binding at 360 mg/m (2). Across all dose levels and histologies, one patient achieved partial response at 480 mg/m (2) dose; 14 patients had stable disease as best response and four patients progressed. Overall, SM03 was tolerated at doses ranging from 60-480 mg/m (2) and had potential efficacy in Chinese patients with follicular lymphoma.
The Structure of Hair, Muscle, and Related Proteins (1951)

Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans the biological, physical, and social sciences.
Androgen receptors in human melanoma cell lines IIB-MEL-LES and IIB-MEL-IAN and in human melanoma metastases (2002)

The presence and characteristics of androgen receptors (ARs) have been described by our group in one human melanoma cell line. We have now investigated their presence in two other human melanoma cell lines, IIB-MEL-LES and IIB-MEL-IAN, as well as in biopsies from human metastatic melanoma. Scatchard analysis revealed a single binding component for both cell lines, the apparent dissociation constant obtained being 15 nM, with a binding capacity of 280 fmol/mg total cell protein, for IIB-MEL-LES cells and 14 nM, with a binding capacity of 206 fmol/mg total cell protein for IIB-MEL-IAN cells. When specificity was assessed, not only androgen and anti-androgen but also non-androgenic compounds were able to compete for [3H]R1881 binding, as seen before. When immunocytochemistry of IIB-MEL-LES and IIB-MEL-IAN cells was performed for ARs, both cell lines were deeply stained in the nucleus, whereas no staining was found for oestrogen or progesterone receptors. Every specimen of melanoma metastases tested for the presence of ARs was deeply stained, and in the majority the intensity of the staining was high. Several hormones and anti-hormones were tested for their ability to affect cell proliferation. In both cell lines, testosterone, dihydrotesterone, oestradiol and progesterone significantly stimulated cell proliferation, and this was reversed by hydroxyflutamide, bicalutamide or tamoxifen.
Field-Effect Transistors Based on Thiophene Hexamer Analogues with Diminished Electron Donor Strength (1999)

Several new p-type semiconducting materials with lower electron-donating ability than the parent sexithiophene were synthesized and their thermal, morphological, and FET properties were investigated. The incorporation of thiazole rings into oligothiophenes was designed to lower the highest occupied molecular orbital (HOMO) level of the molecules and hence make them less susceptible to p-doping. FET devices based on a dihexylated six-ring compound with thiazoles as the central rings indeed showed enhanced stability to p-doping over those of typical sexithiophenes. Relatively high on/off current ratios (greater than 104 for gate voltages of −100 and 0 V) were routinely obtained from devices operating in air, eliminating the need for strict exclusion of oxygen. The threshold voltage of devices made from this compound showed no signs of shifting toward more positive gate voltages after more than one month's exposure to the air. The thiazole-containing oligomers generally had lower field-effect mobilities than the corresponding oligothiophenes, possibly due to larger charge injection barrier and less favorable morphologies of the evaporated films. The electrical characteristics of the previously uninvestigated α,ω-dihexyl quinquethiophene (DHα5T) are also reported in this paper. Single-crystal morphologies were observed in evaporated films of DHα5T. Films evaporated at an optimal deposition temperature (TD = 155 °C) gave mobilities as high as 0.1 cm2/Vs. As in the cases of pentacene and DHα4T, we believe that the greatly enhanced mobility is probably correlated with the single-crystal morphology. DHα5T molecules also have an orientation different from the essentially perpendicular one of other oligothiophenes; they were found to be tilted at ∼30° to the substrate.
Interference in Learning Internal Models of Inverse Dynamics in Humans (1994)

Experiments were performed to reveal some of the computational properties of the human motor memory system. We show that as humans practice reaching movements while interacting with a novel mechanical environment, they learn an internal model of the inverse dynamics of that environment. Subjects show recall of this model at testing sessions 24 hours after the initial practice. The representation of the internal model in memory is such that there is interference when there is an attempt to learn a new inverse dynamics map immediately after an anticorrelated mapping was learned. We suggest that this interference is an indication that the same computational elements used to encode the first inverse dynamics map are being used to learn the second mapping. We predict that this leads to a forgetting of the initially learned skill. To appear in Advances in Neural Information Processing Systems, vol. 7, 1995, Morgan Kaufmann, San Francisco, CA. 1 Introduction In tasks where we use our hands ...
The aurora kinase AIR-2 functions in the release of chromosome cohesion in Caenorhabditis elegans meiosis (2002)

Accurate chromosome segregation during cell division requires not only the establishment, but also the precise, regulated release of chromosome cohesion. Chromosome dynamics during meiosis are more complicated, because homologues separate at anaphase I whereas sister chromatids remain attached until anaphase II. How the selective release of chromosome cohesion is regulated during meiosis remains unclear. We show that the aurora-B kinase AIR-2 regulates the selective release of chromosome cohesion during Caenorhabditis elegans meiosis. AIR-2 localizes to subchromosomal regions corresponding to last points of contact between homologues in metaphase I and between sister chromatids in metaphase II. Depletion of AIR-2 by RNA interference (RNAi) prevents chromosome separation at both anaphases, with concomitant prevention of meiotic cohesin REC-8 release from meiotic chromosomes. We show that AIR-2 phosphorylates REC-8 at a major amino acid in vitro. Interestingly, depletion of two PP1 phosphatases, CeGLC-7alpha and CeGLC-7beta, abolishes the restricted localization pattern of AIR-2. In Ceglc-7alpha/beta(RNAi) embryos, AIR-2 is detected on the entire bivalent. Concurrently, chromosomal REC-8 is dramatically reduced and sister chromatids are separated precociously at anaphase I in Ceglc-7alpha/beta(RNAi) embryos. We propose that AIR-2 promotes the release of chromosome cohesion via phosphorylation of REC-8 at specific chromosomal locations and that CeGLC-7alpha/beta, directly or indirectly, antagonize AIR-2 activity.
Inhibition of astroglial nuclear factor κB reduces inflammation and improves functional recovery after spinal cord injury (2005)

In the central nervous system (CNS), the transcription factor nuclear factor (NF)-kappaB is a key regulator of inflammation and secondary injury processes. After trauma or disease, the expression of NF-kappaB-dependent genes is highly activated, leading to both protective and detrimental effects on CNS recovery. We demonstrate that selective inactivation of astroglial NF-kappaB in transgenic mice expressing a dominant negative (dn) form of the inhibitor of kappaB alpha under the control of an astrocyte-specific promoter (glial fibrillary acidic protein [GFAP]-dn mice) leads to a dramatic improvement in functional recovery 8 wk after contusive spinal cord injury (SCI). Histologically, GFAP mice exhibit reduced lesion volume and substantially increased white matter preservation. In parallel, they show reduced expression of proinflammatory chemokines and cytokines, such as CXCL10, CCL2, and transforming growth factor-beta2, and of chondroitin sulfate proteoglycans participating in the formation of the glial scar. We conclude that selective inhibition of NF-kappaB signaling in astrocytes results in protective effects after SCI and propose the NF-kappaB pathway as a possible new target for the development of therapeutic strategies for the treatment of SCI.
STAT-related transcription factors are constitutively activated in peripheral blood cells from acute leukemia patients (1996)

A signal transduction pathway activated by many cytokines has recently been elaborated. The JAK kinases and the signal transducers and activators of transcription (STAT) factors have been found to be essential components. In this report, we describe the presence of constitutively activated STAT factors in peripheral blood cells from patients with acute leukemia. We used oligonucleotide probes from the beta-casein and IRF-1 gene promoters and the ISRE probe to detect STAT proteins in nuclear extracts from acute leukemia cells in bandshift assays. Specific DNA protein complex formation was observed with the probes from the beta-casein and IRF-1 gene promoters, but not with the ISRE oligonucleotide probe, when cell extracts from acute lymphoblastic leukemia (ALL) and acute myeloid leukemia (AML) were investigated. We used nonradioactive oligonucleotides as competitors to show the specificity of the complex formation. Specific antibodies directed against the individual STAT proteins were used in supershift experiments. STAT5- and STAT1-related factors were detected in ALL and STAT1-, STAT3-, and STAT5-related proteins were present in nuclear cell extracts from AML. Since the cells were not treated with cytokines before the nuclear proteins were extracted, we conclude that these factors are constitutively activated in vivo. It is likely that the constitutive activation of STAT proteins is a part of the events of leukemogenesis.
Academia and industry meet: some experiences of formal methods in practice (2004)

We present an overview of our observations and experiences of applying formal methods in industry. Our approach combines two existing and complimentary formal methods, namely the Cleanroom method [H. D. Mills et al., (1987), S. J. Prowell et al. (1998)] and the CSP framework [C. A. R. Hoare (1985), A. W. Roscoe (1998)] together with its model checker FDR. The problem we are interested in is the use of formal methods to develop software systems of a business-critical and untestable nature, where the software forms an essential part of some core product or service offered by a business. We argue that the successful implementation of such systems needs a more formal approach and reflect on why formal methods are rarely used in practice. We discuss the combination of Cleanroom and CSP, and show how they can be applied to develop the control software that is embedded in a complex manufacturing machine.
New, specific and reversible bifunctional alkylborinic acid inhibitor of acetylcholinesterase (1974)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTNew, specific and reversible bifunctional alkylborinic acid inhibitor of acetylcholinesteraseKarl A. Koehler and George P. HessCite this: Biochemistry 1974, 13, 26, 5345–5350Publication Date (Print):December 1, 1974Publication History Published online1 May 2002Published inissue 1 December 1974https://pubs.acs.org/doi/10.1021/bi00723a014https://doi.org/10.1021/bi00723a014research-articleACS PublicationsRequest reuse permissionsArticle Views128Altmetric-Citations30LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Ultrasonic Characterization of Blood During Coagulation (1984)

Recently ultrasound has been found to be extremely useful in detecting intracardiac thrombi as well as intracranial hemorrhages in neonates. The principal criterion used for clinical diagnosis of thrombus has been an increase in the echogenicity of clotted blood. However, echogenicity is a rather nonspecific and qualitative description of tissue ultrasonic properties. A rise in echogenicity could be the result of an increase in ultrasonic backscatter, or a decrease in attenuation, or a combination of both. In order to ascertain the mechanism responsible for the clinically observed increase in echogenicity and thus put the technique on a firm foundation, we have measured serially the ultrasonic velocity, attenuation and backscatter in human blood up to 24 hours following the onset of coagulation. Preliminary results show that all three ultrasonic properties increase during this time period. At 24 hours following clotting, the mean rises in velocity, attenuation and backscatter are 3.36 +/- 0.35 X 10(3) cm/sec, 2.3 +/- 0.22 db/cm and 18.5 +/- 1.2 dB per unit volume of blood (at 7.5 MHz and a temperature of 23 degrees C), respectively. These results indicate that the increase in echogenicity of a thrombus is due to a substantial increase in ultrasonic backscatter, which is moderated to a certain extent by the accompanied increase in attenuation.
Perlecan Heparan Sulfate Proteoglycan (2000)

Cell surface heparan sulfate proteoglycans (HSPGs) participate in the catabolism of many physiologically important ligands. We previously reported that syndecan HSPGs directly mediate endocytosis, independent of coated pits. We now studied perlecan, a major cell surface HSPG genetically distinct from syndecans. Cells expressing perlecan but no other proteoglycans bound, internalized, and degraded atherogenic lipoproteins enriched in lipoprotein lipase. Binding was blocked by heparitinase, and degradation by chloroquine. Antibodies against beta(1) integrins reduced initial ligand binding, consistent with their roles as cell surface attachment sites for perlecan. By several criteria, catabolism via perlecan was distinct from either coated pits or the syndecan pathway. The kinetics of internalization (t(12) = 6 h) and degradation (t(12) approximately 18 h) were remarkably slow, unlike the other pathways. Blockade of the low density lipoprotein receptor-related protein did not slow perlecan-dependent internalization. Internalization via perlecan was inhibited by genistein but unaffected by cytochalasin D, a pattern distinct from coated pits or syndecan-mediated endocytosis. Finally, we examined cooperation between perlecan and low density lipoprotein receptors and found limited synergy. Our results demonstrate that perlecan mediates internalization and lysosomal delivery that is kinetically and biochemically distinct from other known uptake pathways and is consistent with a very slow component of HSPG-dependent ligand processing found in vitro and in vivo.
The Addition of Sodium Bisulfite to Alkylene Oxides (1936)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTThe Addition of Sodium Bisulfite to Alkylene OxidesWalter M. Lauer and Archie HillCite this: J. Am. Chem. Soc. 1936, 58, 10, 1873–1874Publication Date (Print):October 1, 1936Publication History Published online1 May 2002Published inissue 1 October 1936https://pubs.acs.org/doi/10.1021/ja01301a014https://doi.org/10.1021/ja01301a014research-articleACS PublicationsRequest reuse permissionsArticle Views290Altmetric-Citations13LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Grain structure and magnetism of nanocrystalline ferromagnets (1989)

Amorphous ribbons of composition Fe/sub 73.5/Cu/sub 1/Nb/sub 3/Si/sub 13.5/B/sub 9/ have been annealed above their crystallization temperature, which produces a homogeneous, ultrafine grain structure of alpha FeSi with typical grain diameters of 10-20 nm. The temperature dependence of saturation magnetization reveals two different magnetic phases which correspond to the alpha -FeSi grains and the grain boundary phase, respectively. The nanocrystalline material exhibits excellent soft magnetic properties which are discussed within the framework of the random anisotropy model.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Nerve Growth Factor (NGF) Autoantibodies and NGF in the Synovial Fluid: Implications in Spondylarthropathies (1996)

We investigated the presence of nerve growth factor (NGF) autoantibodies and NGF in the synovial fluid (SF) of patients with different forms of chronic arthritis such as spondylarthropathy (SpA), rheumatoid arthritis (RA), calcium pyrophosphate dihydrate crystal deposition disease (CPPD) and osteoarthritis (OA) and compared them to their levels in serum. NGF autoantibodies were detected by ELISA and by their capacity to immunoprecipitate NGF and to inhibit its biological activity. NGF was measured with a two-site enzyme-linked immunosorbent assay. Significantly high NGF autoantibody levels (p < 10(-4)) and high frequency of detectable NGF (p < 0.01) were observed in the SF of SpA patients and to a lesser degree in RA patients as compared to CPPD and OA patients. In the serum high frequency of detectable NGF was observed only in RA patients. These results suggest a role of NGF autoantibodies and NGF in joint inflammation especially in spondylarthropathies.
Time-temperature relationship th hyperthermic treatment of malignant and normal tissue in vivo. (1979)

The effect of hyperthermia on normal and tumor tissue was studied following water bath heating of a methylcholanthrene-induced fibrosarcoma (FSaI) isotransplanted into the feet of C3H mice. The time-temperature relation for the 50% tumor control dose over the temperature range of 41.5--45.5 degrees showed a log linear relationship which followed a biphasically modified Arrhenius plot. At temperatures above 43 degrees, there was a 50% reduction in heating time to obtain the 50% tumor control dose for each 1 degree increase in temperature, corresponding to an activation energy of 140 kcal/mol. At temperatures below 43 degrees, the curve was steeper, with a tendency to double the treatment time for each 0.5 degree reduction in temperature (activation energy, approximately 230kcal/mol). Normal tissue damage in the tumor-bearing foot was estimated at two levels with a 50% response dose assay. Severe normal tissue damage showed a time-temperature relationship similar to the tumor response, thus indicating no variation in therapeutic ratio at different temperatures. However, for slight tissue damage, the therapeutic ratio increased with decreasing temperatures, yielding a better therapeutic ratio at lower temperatures. The time-temperature relationship obtained in the FSaI fibrosarcoma is supported by other studies and points to a general time-temperature relationship for hyperthermic tumor destruction.