gebhart/patrepeval huggingface dataset:
Polar Codes: Characterization of Exponent, Bounds, and Constructions (2010)

Polar codes were recently introduced by Arikan. They achieve the symmetric capacity of arbitrary binary-input discrete memoryless channels under a low complexity successive cancellation decoding scheme. The original polar code construction is closely related to the recursive construction of Reed-Muller codes and is based on the 2 × 2 matrix [1 0 : 1 1]. It was shown by Arikan Telatar that this construction achieves an error exponent of 1/2, i.e., that for sufficiently large blocklengths the error probability decays exponentially in the square root of the blocklength. It was already mentioned by Arikan that in principle larger matrices can be used to construct polar codes. In this paper, it is first shown that any ℓ × ℓ matrix none of whose column permutations is upper triangular polarizes binary-input memoryless channels. The exponent of a given square matrix is characterized, upper and lower bounds on achievable exponents are given. Using these bounds it is shown that there are no matrices of size smaller than 15×15 with exponents exceeding 1/2. Further, a general construction based on BCH codes which for large I achieves exponents arbitrarily close to 1 is given. At size 16 × 16, this construction yields an exponent greater than 1/2.
The Vast Majority of CLA+ T Cells Are Resident in Normal Skin (2006)

There are T cells within normal, noninflamed skin that most likely conduct immunosurveillance and are implicated in the development of psoriasis. We isolated T cells from normal human skin using both established and novel methods. Skin resident T cells expressed high levels of CLA, CCR4, and CCR6, and a subset expressed CCR8 and CXCR6. Skin T cells had a remarkably diverse TCR repertoire and were mostly Th1 memory effector cells with smaller subsets of central memory, Th2, and functional T regulatory cells. We isolated a surprising number of nonexpanded T cells from normal skin. To validate this finding, we counted T cells in sections of normal skin and determined that there are approximately 1 x 10(6) T cells/cm(2) normal skin and an estimated 2 x 10(10) T cells in the entire skin surface, nearly twice the number of T cells in the circulation. Moreover, we estimate that 98% of CLA(+) effector memory T cells are resident in normal skin under resting conditions. These findings demonstrate that there is a large pool of memory T cells in normal skin that can initiate and perpetuate immune reactions in the absence of T cell recruitment from the blood.
A Mathematical Overview of a Computer Simulation Model of Maternity Histories with Illustrative Examples (1984)

A mathematical overview of a stochastic computer simulation model of maternity histories is provided. Various components of human reproduction are accommodated in the model through distributions of waiting times among live births. Included in these components are distributions of age at first marriage in a cohort of women, waiting times to pregnancy for fecundable women, and the lengths of infecundable periods following live births. Probabilities that pregnancies end in either a live birth, induced abortion, or some other type of outcome are also included. Elements of renewal theory and semi-Markov processes in discrete time were the basic mathematical concepts used in the construction of the model. A brief description of an interactive software package called MATHIST, which may be used to implement the model on a computer, is also included. Four illustrative computer runs with MATHIST, pertinent to the operation of family planning programmes in Africa, are also described and discussed.
Mechanisms stimulating protein degradation to cause muscle atrophy (1998)

Catabolic conditions such as uremia, cancer, insulin-dependent diabetes and sepsis are associated with muscle atrophy resulting from activation of the ubiquitin-proteasome proteolytic pathway. Evidence for the activation of this pathway includes an increase in both proteolytic activity and capacity, as demonstrated by increased protein degradation and a higher rate of gene transcription in muscle yielding increased levels of mRNAs encoding components of the pathway. Glucocorticoids are critical but other hormones and cytokines interact to regulate the activity of this proteolytic pathway.
Multiple Actions of Imperatoxin A on Ryanodine Receptors (2004)

Imperatoxin A is a high affinity activator of ryanodine receptors. The toxin contains a positively charged surface structure similar to that of the A fragment of skeletal dihydropyridine receptors (peptide A), suggesting that the toxin and peptide could bind to a common site on the ryanodine receptor. However, the question of a common binding site has not been resolved, and the concentration dependence of the actions of the toxin has not been fully explored. We characterize two novel high affinity actions of the toxin on the transient gating of cardiac and skeletal channels, in addition to the well documented lower affinity induction of prolonged substates. Transient activity was (a) enhanced with 0.2-10 nm toxin and (b) depressed by >50 nm toxin. The toxin at >/=1 nm enhanced Ca(2+) release from SR in a manner consistent with two independent activation processes. The effects of the toxin on transient activity, as well as the toxin-induced substate, were independent of cytoplasmic Ca(2+) or Mg(2+) concentrations or the presence of adenine nucleotide and were seen in diisothiocyanostilbene-2',2'-disulfonic acid-modified channels. Peptide A activated skeletal and cardiac channels with 100 nm cytoplasmic Ca(2+) and competed with Imperatoxin A in the high affinity enhancement of transient channel activity and Ca(2+) release from SR. In contrast to transient activity, prolonged substate openings induced by the toxin were not altered in the presence of peptide A. The results suggest that Imperatoxin A has three independent actions on ryanodine receptor channels and competes with peptide A for at least one action.
IL-12 Is a Heparin-Binding Cytokine (1999)

Using an ELISA approach, we demonstrate that recombinant human IL-12 (rhIL-12) binds strongly to an immobilized heparin-BSA complex. This binding is completely displaceable with soluble heparin, IC50 approximately 0.1 microg/ml, corresponding to approximately 10 nM. By interpolation with our previous findings, this indicates an affinity for heparin greater than that of antithrombin III and comparable with that of FGF-2, two high-affinity heparin-binding proteins. Recombinant murine IL-12 also binds strongly to heparin. The binding of rhIL-12 to heparin shows specificity because chondroitin sulfates A and C fail to compete, whereas chondroitin B inhibits weakly. A highly sulfated heparan sulfate is a strong competitor, whereas other heparan sulfates show weak or no activity. Small heparin fragments inhibit binding, although activity decreases with size. An octasaccharide pool derived by cleavage of heparin with nitrous acid is a significantly stronger inhibitor than its heparinase I-derived counterpart, further indicating structural specificity in the interaction between rhIL-12 and heparin. The binding of recombinant p40 to heparin appears indistinguishable from that of the IL-12 heterodimer, implying that the heparin binding site is largely if not solely located in this subunit. These results show for the first time that IL-12 is a heparin-binding cytokine, a property common to the other Th1-response-inducing cytokines, IFN-gamma and IL-2. Our findings strongly suggest that IL-12 will tend to be retained close to its sites of secretion in the tissues by binding to heparin-like glycosaminoglycans, thus favoring a paracrine role for IL-12.
Effects of abrasion therapy on tears in the avascular region of sheep menisci (1990)

This study was designed to test the hypothesis that abrasion of the parameniscal synovium aids healing of a stable tear in the avascular region of the meniscus in a sheep model. In six sheep, a 5-7-mm longitudinal full-thickness tear was made in the avascular inner half of the anterior part of the lateral meniscus. The parameniscal synovium was abraded superiorly and inferiorly from the meniscus periphery to the lesion. Three animals in a control group received identical meniscal tears but no abrasion treatment. A harness prevented weight bearing and maintained the knee fully flexed after surgery. Twelve weeks after the operation, no healing was seen in any tears. Histologic examination revealed in both groups increased numbers of dividing chondrocytes on either side of the tear. In the test group, several layers of fibroblasts, which appeared in two menisci to derive from the upper meniscal surface, were seen covering both cut surfaces of the tear. It is concluded that the distance from the periphery to the defect is too far for abrasion therapy to stimulate sufficient cellular ingrowth to facilitate repair of tears in the avascular region of the meniscus.
Effect of Age, Weaning and Postweaning Diet on Small Intestinal Growth and Jejunal Morphology in Young Swine (1988)

The effect of age, weaning and postweaning diet on small intestinal growth and morphology were investigated in young swine. Small intestine weight and villus height, measured at the midpoint of the small intestine (i.e., jejunum), were determined in suckling and weaned pigs. Scanning electron microscopy was performed on jejunal specimens from suckling pigs killed at 2, 10, 21, 28 and 35 d of age and in 21-d and 35-d weaned pigs at various ages postweaning. A 2 X 2 factorial arrangement of postweaning diets also was used to investigate jejunal morphological measurements in a 21-d-old weanling pig group. These dietary treatments evaluated the effects of 0 or 25% added dried whey and 0 or 6% added corn oil. The morphology results demonstrated that jejunal villus height declined during the suckling period, with a marked reduction at 3 and 7 d postweaning for both 21-d-old and 35-d-old weaned pigs. Transmission electron microscopy also demonstrated long, uniform microvilli on the jejunal villi in suckling pigs at 2 and 21 d, with markedly reduced lengths upon weaning. Jejunal villi were shorter in weaned compared with suckling pigs at the same approximate chronological age. Scanning electron microscopy in suckling pigs at 2 and 10 d of age demonstrated long, thin, fingerlike villi with subsequently reduced heights and larger diameters by 35 d of age. At weaning, villi were in close apposition, resulting in an overall smoother villus luminal surface. Villus height subsequently increased by 14 d postweaning, coinciding with the appearance of morphologically tongue-shaped villi. Starter diet composition initially did not influence the villus height reduction response postweaning. Dietary corn oil addition was subsequently associated with shortened villus length (P less than .05) during the starter phase.
The Current Status of Evidence for and Against Postnatal Oogenesis in Mammals: A Case of Ovarian Optimism Versus Pessimism?1 (2008)

Whether or not oogenesis continues in the ovaries of mammalian females during postnatal life was heavily debated from the late 1800s through the mid-1900s. However, in 1951 Lord Solomon Zuckerman published what many consider to be a landmark paper summarizing his personal views of data existing at the time for and against the possibility of postnatal oogenesis. In Zuckerman's opinion, none of the evidence he considered was inconsistent with Waldeyer's initial proposal in 1870 that female mammals cease production of oocytes at or shortly after birth. This conclusion rapidly became dogma, and remained essentially unchallenged until just recently, despite the fact that Zuckerman did not offer a single experiment proving that adult female mammals are incapable of oogenesis. Instead, 20 years later he reemphasized that his conclusion was based solely on an absence of data he felt would be inconsistent with the idea of a nonrenewable oocyte pool provided at birth. However, in the immortal words of Carl Sagan, an "absence of evidence is not evidence of absence." Indeed, building on the efforts of a few scientists who continued to question this dogma after Zuckerman's treatise in 1951, we reported several data sets in 2004 that were very much inconsistent with the widely held belief that germ cell production in female mammals ceases at birth. Perhaps not surprisingly, given the magnitude of the paradigm shift being proposed, this work reignited a vigorous debate that first began more than a century ago. Our purpose here is to review the experimental evidence offered in recent studies arguing support for and against the possibility that adult mammalian females replenish their oocyte reserve. "Never discourage anyone who continually makes progress, no matter how slow."-Plato (427-347 BC).
Simple peptides. II. Syntheses and properties of taurine-dipeptides containing neutral .ALPHA.-amino acid. (1988)

The physicochemical and immunochemical properties of fourteen taurine dipeptides (1-14) containing one of eleven neutral L-amino acids or three neutral D-amino acids were examined. These taurine peptides were synthesized by a conventional method using chemical coupling of taurine with an amino acid. Alternatively, the dipeptides (1-9) containing L-amino acid were also synthesized, with a few exceptions (10, 11), by a new method using a general substitution reaction of a sulfo group for chlorine or bromine via the β-halogenoethyl amide of each amino acid. When sodium sulfite or ammonium sulfite was used in the substitution, the new method gave pure taurine dipeptides in good yield without racemization. All the dipeptides (1-14), including naturally occurring Ser-Tau, showed high cross-reactivities with antisera against haptenic taurine or γGlu-Tau.
Internal pipe inspection robot (2002)

This paper describes a new mechanism, communication system, and vision system of an internal pipe inspection robot. To date, inspection robots have had such limitations as their ability to turn in a T-shaped pipe or move in a plug valve. The new mechanism based on our dual magnetic wheels, resembling a crawler, not only overcomes the limitation but enables the robot to climb over sharp obstacles like sleeve and dresser joints. Another drawback of earlier robots is that the friction between the pipe and the cables for communication and power supply makes it difficult to move a long distance. A fiber optic communication system can reduce the friction. The new vision system has been significantly miniaturized, enabling it to clearly view and inspect the welded section underneath the robot while gazing ahead for navigation. An experimental inspection robot has been successfully made to confirm the efficiency of the approach.
Generalized pustular psoriasis responsive to PUVA and oral cyclosporin therapy (1997)

A patient with acute generalized pustular psoriasis was successfully treated with a combination of oral cyclosporin (6 mg/kg per day) and photochemotherapy (PUVA). Although early inpatient treatment with weak topical steroids and PUVA produced initial improvement, the patient's clinical condition fluctuated, with the subsequent development of erythroderma. The addition of oral cyclosporin produced dramatic improvement within 1 week of its commencement. The patient remained in remission 12 months following cessation of therapy.
Auditory browser for blind and visually impaired users (1999)

This paper presents our work on the development of a multimodal auditory interface which permits blind users to work more easily and efficiently with GUI browsers. A macro-analysis phase, which can be either passive or active, informs on the global layout of HTML documents. A subsequent active micro-analysis phase allows to explore particular elements of the document. The interface is based on : (1) a mapping of the graphical HTML document into a 3D virtual sound space environment, where non-speech auditory cues differentiate HTML elements; (2) the transcription into sound not only of text, but also of images; (3) the use of a touch-sensitive screen to facilitate user interaction. Moreover, in order to validate the sonification model of the images, we have created an audio "memory game", that can be used as a pedagogical tool to help blind pupils learn spatial exploration cues.
Renoprotective Effect of the Angiotensin-Receptor Antagonist Irbesartan in Patients with Nephropathy Due to Type 2 Diabetes (2001)

The angiotensin-II-receptor blocker irbesartan is effective in protecting against the progression of nephropathy due to type 2 diabetes. This protection is independent of the reduction in blood pressure it causes.
Preparation of Secondary Alkyl and Benzylic Zinc Bromides Using Activated Zinc Metal Deposited on Titanium Oxide (1995)

Sodium dispersed on titanium oxide readily reduces zinc chloride leading to a highly active zinc powder which inserts into secondary alkyl and benzylic bromides under mild conditions, producing the corresponding zinc reagents in high yields. Compared to zinc dust, this activated zinc allows the preparation of secondary benzylic zinc bromides with significantly less Wurtz-coupling products.
Abstract 5228: Inhibition of myeloid cell PI3Kγ is a potential therapeutic approach to treat pancreatic cancer (2012)

Abstract Tumor inflammation plays a significant role in initiating and perpetuating tumor growth, angiogenesis and metastasis. While normal inflammatory responses aid in wound healing, fighting infections, and destroying pathogens, tumor inflammation is self-perpetuating and plays a role in facilitating the disease, in part by inducing immunosuppression. Gr1+CD11b+ myeloid cells are the most prevalent inflammatory cells found in tumors, where they directly promote tumor angiogenesis and immunosuppression. Recent studies in our laboratories have shown that the phosphatidylinositol 3-kinase (PI3K) catalytic subunit isoform p110γ, which is expressed exclusively by Gr1+CD11b myeloid cells, directly promotes myeloid cell invasion and consequently, tumor immunosuppression. Genetic and pharmacological suppression of PI3Kγ activity substantially reduces myeloid cell trafficking to orthotopic Pdx1Cre;Kras+; p53+/- and other pancreatic ductal carcinomas, reduces expression of immunosuppressive factors, and inhibits pancreatic tumor growth and metastasis. These studies indicate that PI3Kγ inhibitors may be useful therapeutics for pancreatic ductal carcinoma. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr 5228. doi:1538-7445.AM2012-5228
Chlorofluorocarbons and ozone (1989)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTChlorofluorocarbons and ozoneMack McFarlandCite this: Environ. Sci. Technol. 1989, 23, 10, 1203–1207Publication Date (Print):October 1, 1989Publication History Published online1 May 2002Published inissue 1 October 1989https://pubs.acs.org/doi/10.1021/es00068a004https://doi.org/10.1021/es00068a004research-articleACS PublicationsRequest reuse permissionsArticle Views534Altmetric-Citations17LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Effective antitumor activity of paclitaxel-loaded poly (ε-caprolactone)/pluronic F68 nanoparticles after intratumoral delivery into the murine breast cancer model (2010)

A paclitaxel-loaded poly (epsilon]-caprolactone)(PCL)/pluronic F68 (F68) nanoparticle formulation was prepared as an intratumoral delivery system to assess its potential for future neoadjuvant chemotherapy application in the treatment of breast cancer. Paclitaxel-loaded nanoparticles were prepared by a solvent evaporation method using the self-synthesized PCL/F68 compound. Prepared nanoparticles were spherical with a rough, porous surface. As described in our earlier study, F68 was incorporated into the PCL matrix as both a pore-forming agent and to enhance drug release from the particles. A murine breast cancer model has shown that when using equivalent paclitaxel doses, paclitaxel-loaded PCL/F68 nanoparticles administered by a single intratumoral injection were more efficient in impeding tumor development than conventional paclitaxel injections administered by multiple intraperitoneal injections. In conclusion, paclitaxel-loaded PCL/F68 nanoparticles can be delivered intratumorally and they effectively prevent tumor cell growth and establishment in a localized area. This treatment shows promise as a future neoadjuvant chemotherapy application in the treatment of breast cancer.
Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein (2003)

Factor IX is an indispensable protein required in the blood coagulation cascade. It binds to the surface of phospholipid membrane by means of a gamma-carboxyglutamic acid (Gla) domain situated at the N terminus. Recently, we showed that physiological concentrations of Mg2+ ions affect the native conformation of the Gla domain and in doing so augment the biological activity of factor IXa and binding affinity with its binding protein even in the presence of Ca2+ ions. Here we report on the crystal structures of the Mg2+/Ca2+-bound and Ca2+-bound (Mg2+-free) factor IX Gla domain (IXGD1-46) in complex with its binding protein (IX-bp) at 1.55 and 1.80 A resolutions, respectively. Three Mg2+ and five Ca2+ ions were bound in the Mg2+/Ca2+-bound IXGD1-46, and the Mg2+ ions were replaced by Ca2+ ions in Mg2+-free IXGD1-46. Comparison of Mg2+/Ca2+-bound with Ca2+-bound structures of the complexes showed that Mg2+ ion, which formed a bridge between IXGD1-46 and IX-bp, forced IXGD1-46 to rotate 4 degrees relative to IX-bp and hence might be the cause of a more tight interaction between the molecules than in the case of the Mg2+-free structure. The results clearly suggest that Mg2+ ions are required to maintain native conformation and in vivo function of factor IX Gla domain during blood coagulation.