gebhart/patrepeval huggingface dataset:
The measurement of total body water in living pigs by deuterium oxide dilution and its relation to body composition (1973)

1. Deuterium oxide was used to estimate body water in twenty-four pigs of widely differing body composition and of average weight 83·9 kg. 2. After infusion of the isotope, blood samples were collected every 30 min for 4 h. The resulting plasma was purified by a heat-distillation procedure, after which it was analysed for D 2 O by infrared spectroscopy. 3. Approximately 24 h after infusion of the D 2 O each pig was killed, and its composition determined both by chemical analysis and physical dissection. 4. Equilibration of D 2 O in the body was found to be complete within 2 h of injection of the tracer. 5. The mean D 2 O space was found to be 8·6% greater than the mean empty body water space, but only 2·2% greater than the total body water space. 6. Empty body water and total body water were estimated from the regression lines with residual standard deviations of 2·7 and 1·9% respectively. Similarly, the residual standard deviations of the regressions involving the other fat-free components were 6·3% for dissectible lean, 3·2% for fat-free mass, and 5·6% for crude protein. 7. The residual standard deviations of the regressions in which the weights of dissectible fat and total body lipid were predicted were 6·0 and 6·7% respectively.
Customer centred community application design : Introduction of the means‐end chain framework for product design of community applications (2002)

Abstract This paper discusses the application of the means‐end chain (MEC) framework for investigating customers cognitive”; structure regarding community applications. It is argued that the understanding of customers cognition is crucial for the development of sustainable communities. MEC analysis is seen as a mean to support the community design tasks, especially concept development. The MEC analysis within concept development helps to improve the success rate of a newly designed community by the early integration of customer needs and benefits. Based on theoretical considerations about the MEC framework and its limitations a case study regarding an information community is illustrated. Data was collected conducting individual laddering interviews online at a major information portal in Germany. Dividing answers into attributes, consequences, and values and using content analysis hierarchical value maps (HVM) for both, messaging applications and information ‐portals, were constructed. To support concept development of a new information community, as a distribution platform for content, the findings of both HVMs were considered. Examples illustrate, that the MEC analysis helps to create a community concept that is focused on the targeted customers. It is supporting the creative process of finding community functions and features that are fitting or can be linked to the existing cognitive structures.
MEPS as a Rapid Sample Preparation Method to Handle Unstable Compounds in a Complex Matrix: Determination of AZD3409 in Plasma Samples Utilizing MEPS-LC-MS-MS (2008)

The aim of the present investigation is to develop a simple, fast, and sensitive method for the determination of a new candidate drug, AZD3409, in rat, dog, and human plasma samples. AZD3409 is stable in aqueous solutions at low pH (< 4) but not in whole blood or in plasma. In rat plasma at 25 degrees C, more than 90% of the compound is degraded within 40 min. When 20 mg of NaF and 50 microL of protease inhibitor cocktail are added to 1.0 mL of rat blood, AZD3409 is stable for up to about 90 min. Due to the instability of AZD3409, microextraction in packed syringe (MEPS) is used as an online and fast sample-preparation method, followed by liquid chromatography-tandem mass spectrometry (LC-MS-MS) for the quantitation of this compound in plasma samples. In MEPS, the sampling sorbent is 1 mg of polystyrene polymer packed in a 250-microL syringe. When the plasma sample (50-250 microL) is withdrawn through the syringe by an autosampler, the analyte is adsorbed to the solid phase. The analyte is then eluted with an organic solvent such as methanol or the LC mobile phase (20-50 microL) directly into the instrument's injector. MEPS is rapid and easy to use. The lower limit of quantitation for AZD3409 is established to be 0.024 microM. The accuracy of the quality-control samples ranged from 89% to 102%, and the precision (C.V.%) had a value of 11-16% for the plasma samples. The calibration curve in plasma is obtained in the concentration range 0.022-9.0 microM. The coefficients of determination (R2) for plasma samples were > or = 0.998 for all runs. The present method is used for the analysis of rat and dog plasma samples.
Using robotic systems in order to determine biomechanical properties of soft tissues. (2008)

Biomechanical properties of soft tissue are important not only during computer simulation for medical training but also for systems where tissue deformation must be estimated in real-time, for example, Robot Assisted Surgery. The purpose of this paper is to describe some biomechanical tests consisting in the measurement of contact forces and deformations in tissue phantoms and porcine soft tissues (liver, brain, stomach and intestine). During the measurements two different procedures were applied. First, we have used a 5DOF micromanipulator instrumented with a spherical probe and a 6-axis force/torque ATI sensor. In the second procedure instead of the micromanipulator a Stäubli RX60 robot was used to apply the force over the samples. During this last test a high noise-signal relationship was detected and in order to improve the accuracy of the experiments some results were obtained using a Stäubli TX40 robot. Major accuracy in research in the field of soft tissue could be reached using standard procedures. Robotic systems allow precise movements to carry on biomechanical tests, and also permit a wide range of tasks to be implemented.
Expression of MAGE-A and NY-ESO-1 in Primary and Metastatic Cancers (2015)

Melanoma-associated antigen-A (MAGE-A) and New York esophageal squamous cell cancer-1 (NY-ESO-1) are 2 cancer testis antigens (CTA) demonstrating potential for use in targeted immunotherapy. Clinical trials in melanoma and synovial sarcomas targeting these antigens in immune-based therapies have demonstrated durable tumor regression. Although protein expression of NY-ESO-1 has been assessed in a variety of cancer types, the expression of MAGE-A has not been studied in depth. In this study we analyzed MAGE-A and NY-ESO-1 expression in 314 melanoma specimens from 301 melanoma patients, 38 patients with squamous cell cancers and 111 patients with adenocarcinomas. Our results demonstrated higher expression of MAGE-A compared with NY-ESO-1 in melanomas (32% vs. 13%) and squamous cell carcinomas (45% vs. 7.9%), and higher expression of both CTAs in metastatic versus primary tumors. CTA expression in adenocarcinomas was low (MAGE-A: 10%, NY-ESO-1: 0.9%). In addition, we looked at concordance of expression among metastatic melanoma lesions within the same patient and found concordant expression in 38 of 47 patients for MAGE-A and 43 of 47 patients for NY-ESO-1. Our study demonstrated that the MAGE-A family may be of greater utility than NY-ESO-1 for targeted immunotherapy in a variety of cancer histologies, in particular metastatic melanomas and squamous cell carcinomas.
Transcription-Dependent Epidermal Growth Factor Receptor Activation by Hepatocyte Growth Factor (2008)

The mechanisms and biological implications of coordinated receptor tyrosine kinase coactivation remain poorly appreciated. Epidermal growth factor receptor (EGFR) and c-Met are frequently coexpressed in cancers, including those associated with hepatocyte growth factor (HGF) overexpression, such as malignant astrocytoma. In a previous analysis of the HGF-induced transcriptome, we found that two EGFR agonists, transforming growth factor-alpha and heparin-binding epidermal growth factor-like growth factor (HB-EGF), are prominently up-regulated by HGF in human glioma cells. We now report that stimulating human glioblastoma cells with recombinant HGF induces biologically relevant EGFR activation. EGFR phosphorylation at Tyr(845) and Tyr(1068) increased 6 to 24 h after cell stimulation with HGF and temporally coincided with the induction of transforming growth factor-alpha (~5-fold) and HB-EGF (~23-fold) expression. Tyr(845) and Tyr(1068) phosphorylation, in response to HGF, was inhibited by cycloheximide and actinomycin D, consistent with a requirement for DNA transcription and RNA translation. Specifically, blocking HB-EGF binding to EGFR with the antagonist CRM197 inhibited HGF-induced EGFR phosphorylation by 60% to 80% and inhibited HGF-induced S-G(2)-M transition. CRM197 also inhibited HGF-induced anchorage-dependent cell proliferation but had no effect on HGF-mediated cytoprotection. These findings establish that EGFR can be activated with functional consequences by HGF as a result of EGFR ligand expression. This transcription-dependent cross-talk between the HGF receptor c-Met and EGFR expands our understanding of receptor tyrosine kinase signaling networks and may have considerable consequences for oncogenic mechanisms and cancer therapeutics.
Breaking paragraphs into lines (1981)

Abstract This paper discusses a new approach to the problem of dividing the text of a paragraph into lines of approximately equal length. Instead of simply making decisions one line at a time, the method considers the paragraph as a whole, so that the final appearance of a given line might be influenced by the text on succeeding lines. A system based on three simple primitive concepts called ‘boxes’, ‘glue’, and ‘penalties’ provides the ability to deal satisfactorily with a wide variety of typesetting problems in a unified framework, using a single algorithm that determines optimum breakpoints. The algorithm avoids backtracking by a judicious use of the techniques of dynamic programming. Extensive computational experience confirms that the approach is both efficient and effective in producing high‐quality output. The paper concludes with a brief history of line‐breaking methods, and an appendix presents a simplified algorithm that requires comparatively few resources.
Cloning, Chromosomal Mapping, and Expression of a Novel Human Secretory Phospholipase A2 (1997)

Secretory phospholipases A2 (sPLA2s) represent a rapidly expanding family of structurally related enzymes found in mammals as well as in insect and snake venoms. In this report, a cDNA coding for a novel sPLA2 has been isolated from human fetal lung, and its gene has been mapped to chromosome 16p13.1-p12. The mature sPLA2 protein has a molecular mass of 13.6 kDa, is acidic (pI 5.3), and made up of 123 amino acids. Key structural features of the sPLA2 include: (i) a long prepropeptide ending with an arginine doublet, (ii) 16 cysteines located at positions that are characteristic of both group I and group II sPLA2s, (iii) a C-terminal extension typical of group II sPLA2s, (iv) and the absence of elapid and pancreatic loops that are characteristic of group I sPLA2s. Based on these structural properties, this sPLA2 appears as a first member of a new group of sPLA2s, called group X. A 1.5-kilobase transcript coding for the human group X (hGX) sPLA2 was found in spleen, thymus, and peripheral blood leukocytes, while a less abundant 0.8-kilobase transcript was detected in the pancreas, lung, and colon. When the hGX sPLA2 cDNA was expressed in COS cells, sPLA2 activity preferentially accumulated in the culture medium, indicating that hGX sPLA2 is an actively secreted enzyme. It is maximally active at physiological pH and with 10 mM Ca2+. hGX sPLA2 prefers phosphatidylethanolamine and phosphatidylcholine liposomes to those of phosphatidylserine.
Autologous leukemia-specific T-cell-mediated lymphocytotoxicity in patients with acute myelogenous leukemia. (1978)

Short-term culture of acute myelogenous leukemia patient's remission lymphocytes with inactivated autologous leukemic blast cells plus allogeneic lymphocytes, generated effector T lymphocytes which were cytotoxic for the specific autologous blast cell in 11 of 14 patients studied. Experiments using Daudi and Molt 4 lymphoblastoid cell lines as third-party helper cell suggest that an HLA D locus incompatability is necessary to provide effective help in this system. Cold target inhibition experiments, crossover studies between pairs of patients, and experiments with allogeneic leukemic blast cells as priming stimulus suggest that the target antigen is only present on the specific autologous blast cell.
Costo directo de cesáreas y reembolso del Seguro Integral de Salud. El caso del Hospital de Apoyo Pomabamba, Ancash, Perú. (2012)

Objetivo: Determinar el costo directo de la cesárea y el porcentaje de reembolso realizado por el Seguro Integral de Salud (SIS), en el Hospital de Apoyo Pomabamba (HAP), en Ancash. Material y métodos: Estudio de costos, transversal descriptivo de corte retrospectivo. Se consideraron todos los partos por cesárea en el periodo enero a diciembre 2003, 39 de ellas fueron sin complicaciones y 12 complicadas. Se revisaron las historias clínicas y los reportes operatorios de cada paciente. Se realizó análisis univariado considerando frecuencias, porcentajes y medidas de tendencia central y dispersión. Resultados: La edad media fue 25,57 años (rango: 16-43 años), el índice de cesárea en el periodo fue 5,9%. El costo directo por cesárea no complicada fue 307,64 nuevos soles y de la cesárea complicada 469,61 nuevos soles. La diferencia de 52,65% mayor a la cesárea complicada está relacionada al uso de medicamentos y mayor estancia hospitalaria. El monto por cesárea facturado al SIS en HAP fue 17 633,30 nuevos soles (media: 345,75 nuevos soles). Conclusiones: El porcentaje asumido por el HAP para las cesáreas financiadas por el SIS fue 36,5% (6 435,30 nuevos soles). Los costos directos calculados son propios del HAP y no se puede generalizar a otros hospitales, porque varían según las características y prácticas propias de cada hospital. Es necesario considerar estudios de costos que permitan observar posibles brechas en el financiamiento del SIS.
Pluronic block copolymers as novel polymer therapeutics for drug and gene delivery (2002)

Pluronic block copolymers are found to be an efficient drug delivery system with multiple effects. The incorporation of drugs into the core of the micelles formed by Pluronic results in increased solubility, metabolic stability and circulation time for the drug. The interactions of the Pluronic unimers with multidrug-resistant cancer cells result in sensitization of these cells with respect to various anticancer agents. Furthermore, the single molecular chains of copolymer, unimers, inhibit drug efflux transporters in both the blood-brain barrier and in the small intestine, which provides for the enhanced transport of select drugs to the brain and increases oral bioavailability. These and other applications of Pluronic block copolymers in various drug delivery and gene delivery systems are considered.
Kinetic and Thermodynamic Modified Wulff Constructions for Twinned Nanoparticles (2013)

Wulff constructions are a powerful tool to predict the shape of nanoparticles, which strongly influences their performance in catalysis, sensing, and surface-enhanced spectroscopies. Previous Wulff models focused on energy minimization and included contributions from the surface energy, interface energy, twin boundaries, and segregation-induced bulk energy changes. However, a large number of shapes cannot be understood by such thermodynamic approaches, in particular many of the twinned late transition metal (Ag, Au, Pt, Pd, etc.) particles of interest in catalysis and plasmonics. A review of the modified Wulff (i.e., twinned) construction is presented here, followed by the development of a modified kinetic Wulff model, which, by including kinetic parameters, explains the emergence of commonly observed shapes such as bitetrahedra, truncated bitetrahedra, thin triangular platelets, perfect decahedra, and decahedral rods.
Scattering, Absorption, and Emission of Light by Small Particles (2002)

Preface Acknowledgements Part I. Basic Theory of Electromagnetic Scattering, Absorption, and Emission: 1. Polarization characteristics of electromagnetic radiation 2. Scattering, absorption, and emission of electromagnetic radiation by an arbitrary finite particle 3. Scattering, absorption and emission by collections of independent particles 4. Scattering matrix and macroscopically isotropic and mirror-symmetric scattering media Part II. Calculation and Measurement of Scattering and Absorption Characteristics of Small Particles: 5. T-matrix method and Lorenz-Mie theory 6. Miscellaneous exact techniques 7. Approximations 8. Measurement techniques Part III. Scattering and Absorption Properties of Small Particles and Illustrative Applications: 9. Scattering and absorption properties of spherical particles 10. Scattering and absorption properties of nonspherical particles Appendices References Index.
Organization of cytoskeletal elements and organelles preceding growth cone emergence from an identified neuron in situ. (1989)

The purpose of this study was to investigate the arrangement of cytoskeletal elements and organelles in an identified neuron in situ at the site of emergence of its growth cone just before and concurrent with the onset of axonogenesis. The Ti1 pioneer neurons are the first pair of afferent neurons to differentiate in embryonic grasshopper limbs. They arise at the distal tip of the limb bud epithelium, the daughter cells of a single precursor cell, the Pioneer Mother Cell (PMC). Using immunohistochemical markers, we characterized the organization of microtubules, centrosomes, Golgi apparatus, midbody, actin filaments, and chromatin from mitosis in the PMC through axonogenesis in the Tils. Just before and concurrent with the onset of axonogenesis, a characteristic arrangement of tubulin, actin filaments, and Golgi apparatus is localized at the proximal pole of the proximal pioneer neuron. The growth cone of the proximal cell stereotypically arises from this site. Although the distal cell's axon generally grows proximally, occasionally it arises from its distal pole; in such limbs, the axons from the sister cells extend from mirror symmetric locations on their somata. In the presence of cytochalasin D, the PMC undergoes nuclear division but not cytokinesis and although other neuronal phenotypes are expressed, axongenesis is inhibited. Our data suggest that intrinsic information determines the site of growth cone emergence of an identified neuron in situ.
A New 17...23 GHz Cavity Stabilized, Hermetically Sealed Module VCO in Chip Technique (1992)

Design, fabrication and performance of a K-band VCO in chip technique on alumina substrate is described. Results gained by simulation and measurements are presented and give courage to use direct carrier generation in the radio frequency range saving frequency doublers and amplifiers. The present work arose from the requirement of a small low-cost oscillator with high reliability as a common part for a family of radio link systems.
Structure-based mutagenesis of the catalytic domain of human immunodeficiency virus type 1 integrase (1997)

Two different crystal structures of the human immunodeficiency virus type 1 (HIV-1) integrase (IN) catalytic domain were analyzed for interactions at the enzyme active site. Gln-62 and Glu-92 interact with active-site residue Asp-64, and Lys-136 interacts with active-site residue Asp-116 across a dimer interface. Conservative and nonconservative substitutions were introduced at these positions to probe the roles of these interactions in HIV-1 integration. Purified mutant proteins were assayed for in vitro 3' processing, DNA strand transfer, and disintegration activities, and HIV-1 mutants were assayed for virion protein composition, reverse transcription, and infectivities in human cell lines. Each of the mutant IN proteins displayed wild-type disintegration activity, indicating that none of the interactions is essential for catalysis. Mutants carrying Gln or Ala for Glu-92 displayed wild-type activities, but substituting Lys for Glu-92 reduced in vitro 3' processing and DNA strand transfer activities 5- to 10-fold and yielded a replication-defective IN active-site mutant viral phenotype. Substituting Glu for Gln-62 reduced in vitro 3' processing and DNA strand transfer activities 5- to 10-fold without grossly affecting viral replication kinetics, suggesting that HIV-1 can replicate in T-cell lines with less than the wild-type level of IN activity. The relationship between IN solubility and HIV-1 replication was also investigated. We previously showed that substituting Lys for Phe-185 dramatically increased the solubility of recombinant IN but caused an HIV-1 particle assembly defect. Mutants carrying His at this position displayed increased solubility and wild-type replication kinetics, showing that increased IN solubility per se is not detrimental to virus growth.
Patterns of brain angiogenesis after vascular endothelial growth factor administration in vitro and in vivo (1998)

Vascular endothelial growth factor (VEGF) is a secreted endothelial cell mitogen that has been shown to induce vasculogenesis and angiogenesis in many organ systems and tumors. Considering the importance of VEGF to embryonic vascularization and survival, the effects of administered VEGF on developing or adult cerebrovasculature are unknown: can VEGF alter brain angiogenesis or mature cerebrovascular patterns? To examine these questions we exposed fetal, newborn, and adult rat cortical slice explants to graduated doses of recombinant VEGF. The effects of another known angiogenic factor, basic fibroblast growth factor (bFGF), were evaluated in a comparable manner. In addition, we infused VEGF via minipump into the adult cortex. Significant angiogenic effects were found in all VEGF experiments in a dose-responsive manner that were abolished by the addition of VEGF neutralizing antibody. Fetal and newborn explants had a highly complex network of branched vessels that immunoexpressed the flt-1 VEGF receptor, and flk-1 VEGF receptor expression was determined by reverse transcription-PCR. Adult explants had enlarged, dilated vessels that appeared to be an expansion of the existing network. All bFGF-treated explants had substantially fewer vascular profiles. VEGF infusions produced both a remarkable localized neovascularization and, unexpectedly, the expression of flt-1 on reactive astrocytes but not on endothelial cells. The preponderance of neovascularization in vitro and in vivo, however, lacked the blood-brain barrier (BBB) phenotype marker, GLUT-1, suggesting that in brain the angiogenic role of VEGF may differ from a potential BBB functional role, i.e., transport and permeability. VEGF may serve an important capacity in neovascularization or BBB alterations after brain injury.
Relationship between Chloride Diffusivity and the Fundamental Properties of Concrete (2009)

Marine concrete structure is exposed to salt injury and deteriorated by steel corrosion due to chloride ions diffusion. It, therefore, is very important to estimate the chloride diffusivity in concrete. In this paper the compressive strength and permeable pore volume of concrete are measured and the diffusion coefficient and penetration depth of chloride ions in concrete were investigated to estimate the chloride diffusivity efficiently. To correlate these results each other, regression analysis was done. The results showed a good linear relation between chloride diffusivity and the fundamental properties of concrete and the chloride diffusivity of concrete with water-cement ratios of were about .