gebhart/patrepeval huggingface dataset:
Contactless conductivity detection for analytical techniques: Developments from 2010 to 2012 (2012)

The developments in the field of capacitively coupled contactless conductivity detection in the approximate period from July 2010 to June 2012 are traced. Few reports concerning fundamental studies or new detector designs have appeared. On the other hand, applications in standard CZE are flourishing and contactless conductivity measurements are increasingly being employed as part of novel or more sophisticated experimental systems. Work on the lab-on-chip devices integrating contactless conductivity detection is continuing. A range of reports on the use of the simple yet powerful detection technique of contactless conductivity measurements in chromatographic separation as well as for analytical methods not including a separation step have also appeared.
Proplatelet formation of megakaryocytes is triggered by autocrine-synthesized estradiol (2003)

A matured megakaryocyte releases thousands of platelets through a drastic morphological change, proplatelet formation (PPF). The megakaryocyte/erythrocyte-specific transcription factor, p45 NF-E2, is essential for initiating PPF, but the factor regulating PPF has not been identified. Here we report that estradiol synthesized in megakaryocytes triggers PPF. We demonstrate that a key enzyme for steroid hormone biosynthesis, 3beta-hydroxysteroid dehydrogenase (3beta-HSD), is a target of p45 NF-E2, and rescues PPF of p45 NF-E2-deficient megakaryocytes. We also show that estradiol is synthesized within megakaryocytes, and that extracellular estradiol stimulates PPF, inhibition of 3beta-HSD activity blocks PPF, and estrogen receptor antagonists inhibit platelet production in vivo. We conclude that autocrine estradiol action regulates platelet production by triggering PPF.
Clinical Factors That Affect Walking Level and Performance in Chronic Spinal Cord Lesion Patients (2008)

Results confirm the recognized importance of age and upper and lower extremity strengths for walking after a SCL. They also highlight the role of 2 other factors, i.e., balance and spasticity, seldom considered as thoroughly in SCL.
The formation of laser beams with pure azimuthal or radial polarization (2000)

Laser resonator configurations for obtaining pure azimuthal and radial polarized beams are presented. They involve the coherent summation, inside the laser resonator, of two orthogonally polarized TEM01 modes. Basic principles and experimental results with a Nd:YAG laser are presented. The results include a full space variant polarization measurement and show efficient formation of high-quality azimuthal and radial polarized beams.
Generation of human induced pluripotent stem cells from human skin fibroblasts (2011)

Objective Generation of human induced pluripotent stem cells from human skin fibroblasts.Methods Sox2, Klf4, Oct4, c-Myc were transfected into HSF cells with retrovirus, and then HSF cells was reprogrammed to iPS cells.Detecting cells endogenous and exogenous gene, analyzing karyotype,cells alkaline phosphatase staining and immunofluorescence staining, differentiating into teratomas in vivo and embryoid bodies in vitro were performed.Results iPS cell morphology was similar to embryonic stem cells (ES).The expression of Nanog, Oct4, Rex1, Sox2 in iPS cells were higher than HSF cells, and Sox2, Klf4, Oct4, c-Myc were silenced for the iPS cells.Exogenous genes were inserted into the nucleus of iPS cells, which was confirmed by 1％ agarose gel electrophoresis.iPS cell karyotype was normal, alkaline phosphatase activity increased, ES cell-specific protein expressed.iPS cells were differentiated into a teratoma in vivo and embryoid bodies in vitro.Conclusions iPS cells were similar to ES cells, which have pluripotency.

Key words: 
Skin/CY;  Fibroblasts;  Multipotent stem cells;  Cell culture techniques
Critical Role of Histone Methylation in Tumor Suppressor Gene Silencing in Colorectal Cancer (2002)

The mechanism of DNA hypermethylation-associated tumor suppressor gene silencing in cancer remains incompletely understood. Here, we show by chromatin immunoprecipitation that for three genes (P16, MLH1, and the O(6)-methylguanine-DNA methyltransferase gene, MGMT), histone H3 Lys-9 methylation directly correlates and histone H3 Lys-9 acetylation inversely correlates with DNA methylation in three neoplastic cell lines. Treatment with the histone deacetylase inhibitor trichostatin A (TSA) resulted in moderately increased Lys-9 acetylation at silenced loci with no effect on Lys-9 methylation and minimal effects on gene expression. By contrast, treatment with the DNA methyltransferase inhibitor 5-aza-2'-deoxycytidine (5Aza-dC) rapidly reduced Lys-9 methylation at silenced loci and resulted in reactivation for all three genes. Combined treatment with 5Aza-dC and TSA was synergistic in reactivating gene expression through simultaneous effects on Lys-9 methylation and acetylation, which resulted in a robust increase in the ratio of Lys-9 acetylated and methylated histones at loci showing dense DNA methylation. By contrast to Lys-9, histone H3 Lys-4 methylation inversely correlated with promoter DNA methylation, was not affected by TSA, and was increased moderately at silenced loci by 5Aza-dC. Our results suggest that reduced H3 Lys-4 methylation and increased H3 Lys-9 methylation play a critical role in the maintenance of promoter DNA methylation-associated gene silencing in colorectal cancer.
Structural and Functional Analysis of Interferon Regulatory Factor 3: Localization of the Transactivation and Autoinhibitory Domains (1999)

The interferon regulatory factor 3 (IRF-3) gene encodes a 55-kDa protein which is expressed constitutively in all tissues. In unstimulated cells, IRF-3 is present in an inactive cytoplasmic form; following Sendai virus infection, IRF-3 is posttranslationally modified by protein phosphorylation at multiple serine and threonine residues located in the carboxy terminus. Virus-induced phosphorylation of IRF-3 leads to cytoplasmic to nuclear translocation of phosphorylated IRF-3, association with the transcriptional coactivator CBP/p300, and stimulation of DNA binding and transcriptional activities of virus-inducible genes. Using yeast and mammalian one-hybrid analysis, we now demonstrate that an extended, atypical transactivation domain is located in the C terminus of IRF-3 between amino acids (aa) 134 and 394. We also show that the C-terminal domain of IRF-3 located between aa 380 and 427 participates in the autoinhibition of IRF-3 activity via an intramolecular association with the N-terminal region between aa 98 and 240. After Sendai virus infection, an intermolecular association between IRF-3 proteins is detected, demonstrating a virus-dependent formation of IRF-3 homodimers; this interaction is also observed in the absence of virus infection with a constitutively activated form of IRF-3. Substitution of the C-terminal Ser-Thr phosphorylation sites with the phosphomimetic Asp in the region ISNSHPLSLTSDQ between amino acids 395 and 407 [IRF-3(5D)], but not the adjacent S385 and S386 residues, generates a constitutively activated DNA binding form of IRF-3. In contrast, substitution of S385 and S386 with either Ala or Asp inhibits both DNA binding and transactivation activities of the IRF-3(5D) protein. These studies thus define the transactivation domain of IRF-3, two domains that participate in the autoinhibition of IRF-3 activity, and the regulatory phosphorylation sites controlling IRF-3 dimer formation, DNA binding activity, and association with the CBP/p300 coactivator.
P‐glycoprotein in blood–brain barrier endothelial cells: interaction and oligomerization with caveolins (2003)

P-glycoprotein (P-gp), an adenosine triphosphate (ATP)-binding cassette transporter which acts as a drug efflux pump, is highly expressed at the blood-brain barrier (BBB) where it plays an important role in brain protection. Recently, P-gp has been reported to be located in the caveolae of multidrug-resistant cells. In this study, we investigated the localization and the activity of P-gp in the caveolae of endothelial cells of the BBB. We used an in vitro model of the BBB which is formed by co-culture of bovine brain capillary endothelial cells (BBCEC) with astrocytes. Caveolar microdomains isolated from BBCEC are enriched in P-gp, cholesterol, caveolin-1, and caveolin-2. Moreover, P-gp interacts with caveolin-1 and caveolin-2; together, they form a high molecular mass complex. P-gp in isolated caveolae is able to bind its substrates, and the caveolae-disrupting agents filipin III and nystatin decrease P-gp transport activity. In addition, mutations in the caveolin-binding motif present in P-gp reduced the interaction of P-gp with caveolin-1 and increased the transport activity of P-gp. Thus, P-gp expressed at the BBB is mainly localized in caveolae and its activity may be modulated by interaction with caveolin-1.
Quantum dot and π-conjugated molecule hybrids: nanoscale luminescence and application to photoresponsive molecular electronics (2014)

Hybrid nanoparticles (NPs) consisting of an n-type CdSe/ZnS quantum dot (QD) as a core and p-type p-conjugate molecules as a shell were fabricated, and their nanoscale photoluminescence (PL) and photoresponsive molecular electronic characteristics were investigated. p-Conjugated macromolecular dioctyloxybenzodithiophene-based polythiophene (P3000) or a single carbazole (CB) molecule with insulating molecular blocks were attached to the QD surface. The nanoscale PL characteristics for the single QD were drastically changed through close contact with P3000 owing to energy and charge transfer effects. However, for the hybrid QD-CB NP, the PL of the QD was dominant because of weak energy transfer resulting from the relatively longer insulating molecular block between the QD and the CB molecule. From time-resolved PL spectra, the exciton lifetimes of the QD in the hybrid QD-P3000 and QD-CB NPs were clearly different because of a variation in the energy transfer rate. The photocurrents of the single hybrid QD-P3000 NP were considerably higher and actively responded to both forward and reverse biases due to the energy and charge transfer effects, while those of the single QD-CB NP exhibited diode characteristics. The QD-based hybrids show distinct nanoscale PL features and photoresponsive molecular electronic characteristics depending on the structures of p-conjugated molecules.
Ovarian cancer (OvCa) awareness (2000)

The author describes her personal experience with ovarian cancer and the establishment of an appeal to raise awareness of this disease. (non-author abstract)
Algorithm Design——Cream of Advanced Language Program Design (2005)

As an information carrier of human-computer interaction, advanced language program design plays an important role in the computer field.However the present Advanced Language Program Design taught in universities has proved to be impractical.Focusing on algorithm design,Cream of advanced language program design has become a task of top priority.
The HMGB1-RAGE axis mediates traumatic brain injury–induced pulmonary dysfunction in lung transplantation (2014)

Traumatic brain injury (TBI) results in systemic inflammatory responses that affect the lung. This is especially critical in the setting of lung transplantation, where more than half of donor allografts are obtained postmortem from individuals with TBI. The mechanism by which TBI causes pulmonary dysfunction remains unclear but may involve the interaction of high-mobility group box-1 (HMGB1) protein with the receptor for advanced glycation end products (RAGE). To investigate the role of HMGB1 and RAGE in TBI-induced lung dysfunction, RAGE-sufficient (wild-type) or RAGE-deficient (RAGE(-/-)) C57BL/6 mice were subjected to TBI through controlled cortical impact and studied for cardiopulmonary injury. Compared to control animals, TBI induced systemic hypoxia, acute lung injury, pulmonary neutrophilia, and decreased compliance (a measure of the lungs' ability to expand), all of which were attenuated in RAGE(-/-) mice. Neutralizing systemic HMGB1 induced by TBI reversed hypoxia and improved lung compliance. Compared to wild-type donors, lungs from RAGE(-/-) TBI donors did not develop acute lung injury after transplantation. In a study of clinical transplantation, elevated systemic HMGB1 in donors correlated with impaired systemic oxygenation of the donor lung before transplantation and predicted impaired oxygenation after transplantation. These data suggest that the HMGB1-RAGE axis plays a role in the mechanism by which TBI induces lung dysfunction and that targeting this pathway before transplant may improve recipient outcomes after lung transplantation.
Therapeutic potential of anti-IL-6 therapies for granulocytic airway inflammation in asthma (2015)

We demonstrate the association of pleiotropic cellular airway inflammation with IL-6 using human and animal data. These data suggest that exacerbations of asthma, particularly those with a combined eosinophilic and neutrophilic bronchitis, may respond to therapies targeting the IL-6 pathway and therefore, provide a rational basis for initiation of clinical trials to evaluate this.
RGB-Infrared Cross-Modality Person Re-identification (2017)

Person re-identification (Re-ID) is an important problem in video surveillance, aiming to match pedestrian images across camera views. Currently, most works focus on RGB-based Re-ID. However, in some applications, RGB images are not suitable, e.g. in a dark environment or at night. Infrared (IR) imaging becomes necessary in many visual systems. To that end, matching RGB images with infrared images is required, which are heterogeneous with very different visual characteristics. For person Re-ID, this is a very challenging cross-modality problem that has not been studied so far. In this work, we address the RGB-IR cross-modality Re-ID problem and contribute a new multiple modality Re-ID dataset named SYSU-MM01, including RGB and IR images of 491 identities from 6 cameras, giving in total 287,628 RGB images and 15,792 IR images. To explore the RGB-IR Re-ID problem, we evaluate existing popular cross-domain models, including three commonly used neural network structures (one-stream, two-stream and asymmetric FC layer) and analyse the relation between them. We further propose deep zero-padding for training one-stream network towards automatically evolving domain-specific nodes in the network for cross-modality matching. Our experiments show that RGB-IR cross-modality matching is very challenging but still feasible using the proposed model with deep zero-padding, giving the best performance. Our dataset is available at http:// isee.sysu.edu.cn/project/RGBIRReID.htm.
Preservation of biosignatures in clay-rich systems: implications for Martian exobiology . (2011)

Searching for traces of extinct and/or extant life on the surface of Mars is one of the major objectives for remote-sensing and in-situ exploration of the planet. In a recent paper we have studied the infrared (IR) spectral modifications induced by thermal processing on differently preserved carbonate fossils, in order to discriminate them from their abiotic counterparts. The main conclusion of the study has been that terrestrial fossils after a billion years are so altered that it becomes impossible to trace their biotic origin. Since it is reasonable to assume that the putative Martian fossils should be at least 3.5 billions years old, this would imply that our spectroscopic method could not be able to detect them, if their degradation rate were the same as that we have found in usual conditions for the terrestrial fossils. However, due to the different climate evolution of the two planets, there is the possibility of having two different degradation rates, much lower for Mars than for Earth. In this work we show that our method is quite effective for fossils collected in protective layers of clays and that IR spectroscopy, coupled with thermal processing, can be a useful tool for discriminating between abiotic and biotic (fossil) carbonate samples collected on the Martian surface especially in phyllosilicate-rich regions such as Mawrth Vallis.
Decreased Accessory Cell Function and Costimulatory Activity BY 1, 25‐Dihydroxyvitamin D3—Treated Monocytes (1992)

To characterize the mechanism(s) by which 1,25-dihydroxyvitamin D3 (calcitriol) modulates the costimulatory capacity of monocytes, we examined the effect of calcitriol pretreatment of monocytes on their capacity to promote T cell proliferation (accessory cell function). Correlation of calcitriol-dependent changes in monocyte accessory cell function and alterations in phenotype and cytokine production, and the dependence of these changes on cell viability, were studied. Calcitriol pretreatment induced a defect in accessory cell function that was evident with fixed monocytes, suggesting a cell-surface-associated mechanism. Altered accessory cell function did not correlate with changes in HLA-DR antigen expression and was unaffected by concurrent treatment with interferon-gamma. Calcitriol treatment did not alter either the expression of adhesion molecules or monocytic production of interleukin-1 beta (IL-1 beta) or IL-6. Exogenous IL-1 or IL-6 did not overcome the impaired costimulatory activity of calcitriol-treated monocytes. Thus, calcitriol treatment reduces the capacity of monocytes to promote lectin-induced T cell activation at the level of the plasma membrane, perhaps through altered expression of an uncharacterized molecule important in monocyte-T cell interactions. At chronically inflamed sites, elaboration of calcitriol by activated macrophages may regulate the ability of monocytes to induce both antigen-dependent and antigen-independent T cell proliferation.
Cognitive function after cardiac arrest and temperature management; rationale and description of a sub-study in the Target Temperature Management trial (2013)

ClinicalTrials.gov: NCT01946932.
Role of Tau Protein in Both Physiological and Pathological Conditions (2004)

The morphology of a neuron is determined by its cytoskeletal scaffolding. Thus proteins that associate with the principal cytoskeletal components such as the microtubules have a strong influence on both the morphology and physiology of neurons. Tau is a microtubule-associated protein that stabilizes neuronal microtubules under normal physiological conditions. However, in certain pathological situations, tau protein may undergo modifications, mainly through phosphorylation, that can result in the generation of aberrant aggregates that are toxic to neurons. This process occurs in a number of neurological disorders collectively known as tauopathies, the most commonly recognized of which is Alzheimer's disease. The purpose of this review is to define the role of tau protein under normal physiological conditions and to highlight the role of the protein in different tauopathies.
Botulinum Neurotoxin A Activity Is Dependent upon the Presence of Specific Gangliosides in Neuroblastoma Cells Expressing Synaptotagmin I (2002)

Botulinum neurotoxin A (BoNT/A) is the deadliest of all known biological substances. Although its toxicity makes BoNT/A a biological warfare threat, its biologic activity makes it an increasingly useful therapeutic agent for the treatment of muscular disorders. However, almost 200 years after its discovery, the neuronal cell components required for the activity of this deadly toxin have not been unequivocally identified. In this work, neuroblastoma cells expressing synaptotagmin I, a protein shown to be bound by BoNT/A, were used to determine whether specific gangliosides were necessary for BoNT/A activity as measured by synaptosomal-associated protein of 25 kDa (SNAP-25) cleavage. Ganglioside GT1b was found to support BoNT/A activity significantly more effectively than GD1a, which was far more effective than GM1 when added to ganglioside-deficient murine cholinergic Neuro 2a or to human adrenergic SK-N-SH neuroblastoma cells. Whereas both cell lines expressed synaptotagmin I, SNAP-25 cleavage was not observed in the absence of complex gangliosides. These results indicate that 1) gangliosides are required for BoNT/A activity, 2) synaptotagmin I in the absence of gangliosides does not support BoNT/A activity, and 3) Neuro 2a cells are an efficient model system for studying the biological activity of BoNT/A.
Pathological and virological features of arenavirus disease in guinea pigs. Comparison of two Pichinde virus strains. (1994)

A guinea pig passage-adapted strain of the arena-virus Pichinde (adPIC) is highly virulent in inbred guinea pigs, whereas the related strain PIC3739 is attenuated. Both viruses were macrophage tropic and infected peritoneal, splenic, liver, and alveolar macrophages during experimental Pichinde virus infection. Infection with the virulent strain was associated with unlimited viral replication in the face of exaggerated delayed-type hypersensitivity response, manifested by the macrophage disappearance reaction. Histopathological lesions unique to adPIC-infected guinea pigs included intestinal villus blunting with mucosal infiltration by pyknotic debris-laden macrophages and apoptosis of crypt epithelial cells. Splenic red pulp necrosis was also significantly associated with adPIC infection but not PIC3739 infection. These findings may provide clues to the pathogenesis of a group of poorly understood human viral hemorrhagic fevers.
Narrow cone emission from negative electron affinity photocathodes (2005)

The need for high brightness (e.g., 106Acm−2str−1 at 10keV) electron sources is well established. Negative electron affinity (NEA) semiconductor structures have been studied for this application for several years. It has been argued that one advantage of these materials, particularly GaAs, is that the low effective mass, m*, of electrons in the semiconductor would lead to a narrow cone of emission, and hence increased brightness for a given current density, as a result of Snell’s Law. However this advantage would only apply if the electrons were emitted directly from the Γ-valley (with low m*) rather than indirectly, that is via scattering into the L-valley. We present here a direct experimental confirmation of this narrow cone of emission (semiangle 15°) and describe a quantitative model to account for the results. In photocathodes based on group III-nitride materials, the cone is predicted to be about twice as wide because of the larger values of m*.
An apparatus for rapid and nondestructive comparison of masks and respirators (2020)

The SARS-CoV-2 global pandemic has produced widespread shortages of certified air-filtering personal protection equipment and an acute need for rapid evaluation of breathability and filtration efficiency of proposed alternative solutions. Here, we describe experimental efforts to nondestructively quantify three vital characteristics of mask approaches: breathability, material filtration effectiveness, and sensitivity to fit. We focus on protection against aqueous aerosols >0.3 μm using off-the-shelf particle, flow, and pressure sensors, permitting rapid comparative evaluation of these three properties. We present and discuss both the pressure drop and the particle penetration as a function of flow to permit comparison of relative protection for a set of proposed filter and mask designs. The design considerations of the testing apparatus can be reproduced by university laboratories and medical facilities and used for rapid local quality control of respirator masks that are of uncertified origin, monitoring the long-term effects of various disinfection schemes and evaluating improvised products not designed or marketed for filtration.