gebhart/patrepeval huggingface dataset:
Production and consumption of the tetrapeptide AcSDKP, a negative regulator of hematopoietic stem cells, by hematopoietic microenvironmental cells. (1997)

This study was performed to evaluate the role of human microenvironmental cells in the metabolism of AcSDKP, a physiological inhibitor of hematopoietic stem cells. Using long-term marrow cultures (LTMCs), whose medium already contained a baseline value of AcSDKP, we found after 2 weeks a net output in the culture supernatant indicating that release by cells from the adherent layer was superior to consumption of the peptide. Since human microenvironmental cells consist of macrophages and vascular smooth-muscle-like stromal cells we generated pure populations of macrophages (by culturing cord blood cells in the presence of granulomonocytic colony-stimulating factor) and of stromal cells (generated by stromal colonies). We found in supernatants of macrophage cultures a significantly (p < 0.01) increased level of AcSDKP (compared with value in medium) while in supernatants of stromal cell cultures the level was decreased. Cell content of angiotensin-converting enzyme (ACE) in stromal cells was higher than in macrophages, which suggests a degradation of AcSDKP by stromal cells because of their higher amount of ACE. Finally, we analyzed the content of AcSDKP in adherent layers of LTMCs (with or without extracellular matrix [ECM] components), macrophages, and stromal cells. We found levels of AcSDKP of 1.5 pMol per 106 cells in extracts from macrophages or from stromal cells. On the contrary, extracts from primary layers of LTMCs contained 3 times more AcSDKP; however, after treatment of primary layers by collagenase, AcSDKP level fell to 1 pMol per 10(6) cells. Immunofluorescence using an anti-AcSDKP monoclonal antibody showed an extracellular network in certain areas of LTMCs. This study shows that 1) macrophages synthesize and release in the supernatant AcSDKP, 2) stromal cells probably degrade the peptide via ACE, and 3) components of the ECM from LTMCs serve as a reservoir for the peptide. These results are reminiscent of what has been described for growth factors, produced by microenvironmental cells, and stored in the ECM in close vicinity to hematopoietic precursors.
Morphological transform for removal of exponentially decaying DC-offset (2008)

Presented is a novel mathematical morphological transform to extract decaying DC offset components which are contained in fault currents.
Stereospecific palladium-catalyzed coupling reactions of vinyl iodides with acetylenic tin reagents (1987)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTStereospecific palladium-catalyzed coupling reactions of vinyl iodides with acetylenic tin reagentsJ. K. Stille and James H. SimpsonCite this: J. Am. Chem. Soc. 1987, 109, 7, 2138–2152Publication Date (Print):April 1, 1987Publication History Published online1 May 2002Published inissue 1 April 1987https://pubs.acs.org/doi/10.1021/ja00241a035https://doi.org/10.1021/ja00241a035research-articleACS PublicationsRequest reuse permissionsArticle Views3153Altmetric-Citations197LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Anti-tumor Effect of N-[3,4-dimethoxycinnamoyl]-anthranilic Acid (tranilast) on Experimental Pancreatic Cancer (2002)

The anti-tumor effect of N- [3,4-dimethoxycinnamoyl] -anthranilic acid (tranilast) was examined in experimental pancreatic cancer. Proliferation of PGHAM-1 cells was inhibited by tranilast in a dose-dependent manner, showing a significant difference at a concentration of 25 microgram/ml (p<0.05). In colony formation, tranilast reduced the number of colonies at a concentration of 25 microgram/ml (p<0.01). DNA synthesis for 12 hours was attenuated dose-dependently and a significant difference was observed at concentrations of greater than 50 microgram/ml (p<0.05). From cell cycle analysis, a dose-dependent increase in the distribution of G0-G1 phase was observed. In the dorsal air sac model, the mean angiogenesis indices in PGHAM-1 chambers were 4.17 +/- 0.22 (control group) and 2.33 +/- 0.84 (treatment group), and in VEGF chambers they were 3.60 +/- 0.67 (control group) and 1.92 +/- 0.42 (treatment group), In the peritoneal dissemination model, the quantity of sanguineous ascites, the number and the size of diaphragmatic nodules and the microvessel density (MVD) of the metastatic site were reduced by tranilast significantly. In conclusion, the anti-tumor effect of tranilast on proliferation and on tumor-angiogenesis was confirmed in experimental pancreatic cancer.
In vitro rat myocyte cardiotoxicity model for antitumor antibiotics using adenosine triphosphate/protein ratios. (1988)

Cumulative cardiotoxicity consistently limits the use of antitumor anthracyclines such as doxorubicin (DOX). Several in vivo and in vitro model systems have been developed for screening cardiotoxic agents. Problems with these models include excessive time and nonquantitative toxicity end points. We describe an in vitro system for culturing cardiac myocytes which overcomes these problems. Optimal myocyte cultures were obtained using serial 0.2% crude trypsin digestions of hearts from 1-2-day-old rats. Three-day-old myocyte cultures were treated with DOX for 6 h at concentrations of 0.1 to 10 micrograms/ml (0.18 to 18 microM). Electron microscopy performed on control and DOX-treated cultures showed characteristic histopathological signs of anthracycline damage. These changes included mitochondrial swelling, nuclear pleomorphism, chromatin clumping, and a diffuse loss of membrane integrity. Intracellular ATP, quantitated by the luciferase bioluminescence method, was shown to provide a simple and consistent quantitative biochemical marker of myocyte viability over the range of DOX concentrations used. The results showed both time- and dose-dependent decrements in ATP/protein ratios 72 h following exposure to DOX at concentrations greater than 0.1 microgram/ml. Leakage of lactate dehydrogenase activity, trypan blue uptake, and myocyte beating rates were variable and not as sensitive as ATP levels for evaluation of myocyte viability. Other cytotoxic agents which are not known to be cardiotoxic (dactinomycin, 1-beta-D-arabinofuranosylcytosine, fluorouracil, melphalan, and vincristine), required extremely high concentrations to produce myocyte damage in vitro. Tests with anthracycline analogues also demonstrated the ability of the assay to rank-order cardiotoxic agents on a weight basis: idarubicin greater than DOX greater than daunomycin greater than aclarubicin. When the in vitro drug concentrations required to lower ATP/protein ratios to 50% of controls were related to clinically achievable concentration x time products, DOX and daunomycin proved to be the most cardiotoxic in this series. These results suggest that comparative cardiotoxic screening studies may be performed in vitro using ATP levels in beating neonatal myocytes.
ShapeTouch: Leveraging contact shape on interactive surfaces (2008)

Many interactive surfaces have the ability to detect the shape of hands or objects placed on them. However, shape information is typically either condensed to individual contact points or categorized as discrete gestures. This does not leverage the full expressiveness of touch input, thus limits the actions users can perform in interactive applications. We present ShapeTouch, an exploration of interactions that directly utilize the contact shape on interactive surfaces to manipulations of objects and interactors. ShapeTouch infers virtual contact forces from contact regions and motion to enable interaction with virtual objects in ways that draw upon users’ everyday experiences of interacting with real physical objects.
Brain 4-aminobutyrate aminotransferase. Isolation and sequence of a cDNA encoding the enzyme. (1992)

4-Aminobutyrate aminotransferase is a key enzyme of the 4-aminobutyric acid shunt. It is responsible for the conversion of the neurotransmitter 4-aminobutyrate to succinic semialdehyde. By using oligonucleotide probes based on partial amino acid sequence data for the pig brain enzyme, several overlapping cDNA clones of 2.0-2.2 kilobases in length have been isolated. The largest cDNA clone was selected for sequence analysis. The amino acid sequence predicted from the cDNA sequence shows that the precursor of 4-aminobutyrate aminotransferase consists of the mature enzyme of 473 amino acid residues and an amino-terminal segment of 27 amino acids attributed to the signal peptide. The cofactor pyridoxal-5-P is bound to lysine residue 330 of the deduced amino acid sequence of the mature enzyme.
Simple consistent estimators of stable distribution parameters (1986)

The four parameters of a stable distribution may be estimated consistently from five pre-determined sample quantiles with the aid of the accompanying tables, for a in the range [0.6, 2.0] and g in the range [-1, 1]. The problem of the discontinuity of the traditional location parameter in the asymmetrical cases as a passes unity is resolved. The proposed estimators of a and c are similar to those of Fama and Roll, except that the small asymptotic bias in their estimators has been eliminated, and their restrictions that a be no less than 1.0 and that the distribution be symmetrical have been relaxed. The proposed estimators can provide good initialization values for other more efficient, but computer-intensive, methods.
Nucleotide sequence of the leukotoxin genes of Pasteurella haemolytica A1 (1987)

A 4.4-kilobase-pair DNA fragment coding for the leukotoxin of Pasteurella haemolytica A1 has been isolated, and its nucleotide sequence has been determined. Two open reading frames, designated lktC and lktA, coding for proteins of 19.8 and 101.9 kilodaltons, respectively, were identified. Expression of the two genes in minicell-labeling experiments resulted in the production of the predicted proteins LKTC and LKTA. By using an antiserum against the soluble antigens of P. haemolytica A1 in Western blot (immunoblot) analysis of total cellular proteins from the Escherichia coli clones, LKTA was identified as an additional antigenic protein. Results from subcloning of the DNA fragment suggested that expression from both lktC and lktA is required for leukotoxin activity, indicating that the leukotoxin of P. haemolytica A1 is encoded by two genes. A comparison of the organization and the DNA sequence of the leukotoxin genes with those of the E. coli alpha-hemolysin genes showed a significant degree of homology between the two loci. This analysis suggested that the leukotoxin genes of P. haemolytica A1 and the E. coli alpha-hemolysin genes may have evolved from a common ancestor and that the two toxins may share similar activities or functional domains or both.
Design and Selection of Novel Cys2His2 Zinc Finger Proteins (2001)

Cys2His2 zinc finger proteins offer a stable and versatile framework for the design of proteins that recognize desired target sites on double-stranded DNA. Individual fingers from these proteins have a simple beta beta alpha structure that folds around a central zinc ion, and tandem sets of fingers can contact neighboring subsites of 3-4 base pairs along the major groove of the DNA. Although there is no simple, general code for zinc finger-DNA recognition, selection strategies have been developed that allow these proteins to be targeted to almost any desired site on double-stranded DNA. The affinity and specificity of these new proteins can also be improved by linking more fingers together or by designing proteins that bind as dimers and thus recognize an extended site. These new proteins can then be modified by adding other domains--for activation or repression of transcription, for DNA cleavage, or for other activities. Such designer transcription factors and other new proteins will have important applications in biomedical research and in gene therapy.
Ultrahigh-throughput–directed enzyme evolution by absorbance-activated droplet sorting (AADS) (2016)

Ultrahigh-throughput screening, in which members of enzyme libraries compartmentalized in water-in-oil emulsion droplets are assayed, has emerged as a powerful format for directed evolution and functional metagenomics but is currently limited to fluorescence readouts. Here we describe a highly efficient microfluidic absorbance-activated droplet sorter (AADS) that extends the range of assays amenable to this approach. Using this module, microdroplets can be sorted based on absorbance readout at rates of up to 300 droplets per second (i.e., >1 million droplets per hour). To validate this device, we implemented a miniaturized coupled assay for NAD<sup>+</sup>-dependent amino acid dehydrogenases. The detection limit (10 μM in a coupled assay producing a formazan dye) enables accurate kinetic readouts sensitive enough to detect a minimum of 1,300 turnovers per enzyme molecule, expressed in a single cell, and released by lysis within a droplet. Sorting experiments showed that the AADS successfully enriched active variants up to 2,800-fold from an overwhelming majority of inactive ones at ∼100 Hz. To demonstrate the utility of this module for protein engineering, two rounds of directed evolution were performed to improve the activity of phenylalanine dehydrogenase toward its native substrate. Fourteen hits showed increased activity (improved >4.5-fold in lysate; k<sub>cat</sub> increased >2.7-fold), soluble protein expression levels (up 60%), and thermostability (T<sub>m</sub>, 12 °C higher). The AADS module makes the most widely used optical detection format amenable to screens of unprecedented size, paving the way for the implementation of chromogenic assays in droplet microfluidics workflows.
Maze 3 for Atrial Fibrillation: Two Cuts Too Few? (1994)

The Maze procedure has been developed as a surgical approach to the management of patients with atrial fibrillation refractory to medical treatment. The recent modification of the technique (Maze 3) achieves good rate control with coordinated AV contractions. However, the procedure involves cuts that completely isolate a block of left atrial (LA) wall, including the four ostia of the pulmonary veins. The electrical and mechanical activity of this isolated LA block are dissociated from the rest of the atrium, and the area may, in fact, continue to fibrillate. This may provide a nidus for the development of mural thrombus. The weight and endocardial surface area of the LA block and of the entire LA were estimated in ten formalin fixed hearts from trauma victims with no evidence of cardiac disease. In these samples, the LA block represented 35% of the endocardial surface area of the entire LA and 29% of the weight. The LA block is of sufficient size to allow macroreentrant circuits to form and has the potential to fibrillate if isolated from the rest of the atrium. We modified the Maze 3 procedure to recruit the otherwise isolated LA block by using two additional cuts around each pair of pulmonary veins as they enter the LA. The first patient who underwent the modified procedure demonstrated sinus rhythm on Holter monitoring postoperatively and remained in sinus rhythm following burst atrial pacing at 300 and 420 beats/min each for 30 seconds. In addition, atrial contractions were found to contribute 19% of the cardiac output.(ABSTRACT TRUNCATED AT 250 WORDS)
Augmenting data center networks with multi-gigabit wireless links (2011)

The 60 GHz wireless technology that is now emerging has the potential to provide dense and extremely fast connectivity at low cost. In this paper, we explore its use to relieve hotspots in oversubscribed data center (DC) networks. By experimenting with prototype equipment, we show that the DC environment is well suited to a deployment of 60GHz links contrary to concerns about interference and link reliability. Using directional antennas, many wireless links can run concurrently at multi-Gbps rates on top-of-rack (ToR) switches. The wired DC network can be used to sidestep several common wireless problems. By analyzing production traces of DC traffic for four real applications, we show that adding a small amount of network capacity in the form of wireless flyways to the wired DC network can improve performance. However, to be of significant value, we find that one hop indirect routing is needed. Informed by our 60GHz experiments and DC traffic analysis, we present a design that uses DC traffic levels to select and adds flyways to the wired DC network. Trace-driven evaluations show that network-limited DC applications with predictable traffic workloads running on a 1:2 oversubscribed network can be sped up by 45% in 95% of the cases, with just one wireless device per ToR switch. With two devices, in 40% of the cases, the performance is identical to that of a non-oversubscribed network.
Vascular repair mechanisms after directional atherectomy or percutaneous transluminal coronary angioplasty in atherosclerotic rabbit iliac arteries (1996)

Although directional atherectomy (DA) reduces the plaque burden, successful revascularization is not associated with a reduced restenosis rate when compared with percutaneous transluminal coronary angioplasty (PTCA). The purpose of this study was to compare and contrast the vascular response to DA-induced and PTCA-induced injury. Six to 8 weeks after induction of atherosclerosis, PTCA (n = 34) was performed in one iliac artery and DA in the other (n = 30). Arteries were obtained at 6 time points: 1, 3, 5, 7, 14, and 28 days. Eleven arteries that did not undergo an intervention acted as controls. Radiograms obtained before and after intervention and at euthanization were compared. Morphometric, histologic, and immunohistochemical analyses were performed. Both PTCA and DA resulted in an immediate increase in luminal diameter that subsequently decreased over the ensuing month. PTCA caused deep dissection (7 of 8 arteries), often extending to the adventitia, whereas stand alone DA resulted in deep cleft formation (4 of 5). Of the 30 arteries that underwent DA, 4 exhibited an increase in luminal diameter in the absence of tissue retrieval. Thrombus was observed in both the dissection planes and the clefts within the first 7 days, and cellular ingrowth was appreciated at 5 to 7 days. By 7 days the artery was repaired, and the histologic appearance of the arteries that had undergone PTCA could not be differentiated from the arteries that had undergone DA. Increased intimal and medial collagen and elastin was noted at 14 and 28 days. An increase in the area bordered by the external elastic lamina was observed in both groups. Although successful DA results in tissue removal and the production of a deep tissue cleft and PTCA causes a dissection, both produce a condition in which the arterial injury exposes the arterial media to blood, causing thrombus formation and inflammation with subsequent cellular accumulation into the thrombotic framework.
Real-time quantitative PCR analysis can be used as a primary screen to identify patients with CML treated with imatinib who have BCR-ABL kinase domain mutations (2004)

Mutations within the BCR-ABL kinase domain in imatinib-treated chronic myeloid leukemia (CML) are the main mechanism of acquired resistance. The early detection of mutations should provide clinical benefit by allowing early intervention. Quantitative polymerase chain reaction (RQ-PCR) results of BCR-ABL mRNA were correlated with mutation analysis in 214 patients treated with imatinib. We determined whether there was a difference in the incidence of mutations between the patients with a more than 2-fold rise in BCR-ABL and patients with stable or decreasing levels. Of the 56 patients with a more than 2-fold rise, 34 (61%) had detectable mutations (median rise, 3.0-fold; 25th-75th percentiles, 2.3-5.2). In 31 (91%) of these 34 patients, the mutation was present at the time of the rise and became detectable within 3 months in the remaining patients. Only 1 (0.6%) of 158 patients with stable or decreasing BCR-ABL levels had a detectable mutation, P less than .0001. Thus, a more than 2-fold rise identified 34 (97%) of 35 patients with a mutation. We conclude that a rise in BCR-ABL of more than 2-fold can be used as a primary indicator to test patients for BCR-ABL kinase domain mutations.
Bright, Color-Tunable Fluorescent Dyes in the Visible−Near-Infrared Region (2008)

The newly synthesized Keio Fluors, which are based on boron-dipyrromethene (BDP), have excellent and useful optical properties: vivid colors and sharp emission in the visible−near-infrared region (583−738 nm), high quantum yields (Φ: 0.56−0.98), high extinction coefficients (185000−288000 M-1 cm-1), and good photostabilities. These optical properties are superior to many of the existing fluorescent dyes such as rhodamines, cyanines, or other BDP-based fluorescent dyes.
The effect of yeast polysaccharides on mouse tumors. (1963)

Summary The oncolytic activity of the yeast polysaccharides, zymosan and hydroglucan, has been tested against a number of well established mouse tumors. The most significant results were obtained with intravenously injected hydroglucan, which induced total regression of 90–95 per cent of Sarcoma 37 and Sarcoma 180, and 83 per cent of Krebs-2 carcinoma, with no lethality. Lower percentages of regression of these tumors followed administration of the same amounts of hydroglucan by the intraperitoneal, intramuscular, and subcutaneous routes. The ascites forms of these tumors were not affected by either of the yeast products. Likewise nonresponsive were: Carcinoma 755, Rhabdomyosarcoma MC-1a, spontaneous mammary tumors arising in C3H mice, and a transplantable tumor derived therefrom in this laboratory. The mechanism of action of these agents does not appear to be the same as that involved in tumor destruction by bacterial polysaccharides. Tumor resorption and necrosis occur without hemorrhage, through an apparent host-mediated reaction which involves stimulation of phagocytic elements of liver and spleen.
Multilayer configuration for experiments of spin precession induced by a dc current (2003)

Until now, most predictions about spin precession induced by a CPP dc current have concerned a simple “asymmetric” configuration consisting of a free magnetic layer and of a thicker pinned magnetic layer. In the present work, we propose a different configuration where the precessing free magnetic layer is sandwiched between two thicker pinned magnetic layers having opposite magnetizations. In this “antisymmetric” configuration, the spin current and accumulation arising from expansion/contraction are nearly three times as large as in the asymmetric configuration, for given current and layer thickness. Moreover, both interfaces of the free magnetic layer are now active to generate drive torques. This should result in a reduction of the critical current density needed for spin oscillations, by a factor of about six.