gebhart/patrepeval huggingface dataset:
A report of recent progress in transformation-based error-driven learning (1994)

Most recent research in trainable part of speech taggers has explored stochastic tagging. While these taggers obtain high accuracy, linguistic information is captured indirectly, typically in tens of thousands of lexical and contextual probabilities. In [Brill 92], a trainable rule-based tagger was described that obtained performance comparable to that of stochastic taggers, but captured relevant linguistic information in a small number of simple non-stochastic rules. In this paper, we describe a number of extensions to this rule-based tagger. First, we describe a method for expressing lexical relations in tagging that stochastic taggers are currently unable to express. Next, we show a rule-based approach to tagging unknown words. Finally, we show how the tagger can be extended into a k-best tagger, where multiple tags can be assigned to words in some cases of uncertainty.
An inexpensive accelerometer-based sleep-apnea screening technique (2010)

This paper presents an inexpensive MEMS accelerometer-based sleep-apnea screening technique. The algorithm presented here is easy to implement on a low-end microprocessor, and also accurate enough to detect both obstructive sleep apnea and hypopnea episodes. The results of some preliminary studies are included.
Local Unfolding and the Stepwise Loss of the Functional Properties of Tubulin (1994)

Tubulin exhibits a number of characteristic functions that can be used to identify it. They include the ability to polymerize to microtubules, GTPase activity, and the binding of numerous antimitotic drugs and fluorophores. These functions can be differentially modified by low (0.1-1.0M) urea concentrations, and such urea-induced modifications are stable over time periods of minutes to hours. These intermediate states suggest the existence of restricted regions in the protein each of which is associated with a function and its own urea sensitivity. In order of decreasing sensitivity to urea these effects are decreased rate of polymerization of tubulin to microtubules > decreased extent of polymerization approximately decreased GTPase activity > enhanced fluorescence of a rapidly binding analogue of colchicine-MTPT [2-methoxy-5-(2',3',4'-trimethoxyphenyl)tropone] approximately decreased proteolysis by trypsin (after alpha Arg339) and by chymotrypsin (after beta Tyr281) > enhanced fluorescence of 1-anilino-8-naphthalenesulfonic acid (ANS). Additional evidence for the independent behavior of the restricted regions stems from the markedly different time dependence of the response to urea. These low urea concentrations do not induce significant changes in tryptophan fluorescence, suggesting that the observed effects are due to local unfolding. At higher urea concentrations (2-4 M), the enhanced fluorescence of the ligands is abolished; MTPT fluorescence decreases at lower urea concentrations than ANS fluorescence. Moreover, tubulin becomes highly susceptible to proteolysis at multiple sites, and tryptophan emission shows a red-shift, as expected. Multistep unfolding in response to denaturants has been reported for some other proteins. Tubulin appears to be an extreme example of such local responses that proceed under milder conditions than the global transition to the unfolded state.
Quantum Phase Retrieval of a Rydberg Wave Packet Using a Half-Cycle Pulse (2001)

A terahertz half-cycle pulse was used to retrieve information stored as quantum phase in an N-state Rydberg atom data register. The register was prepared as a wave packet with one state phase reversed from the others (the "marked bit"). A half-cycle pulse then drove a significant portion of the electron probability into the flipped state via multimode interference.
Transgenic Angiopoietin-Like (Angptl)4 Overexpression and Targeted Disruption of Angptl4 and Angptl3: Regulation of Triglyceride Metabolism (2005)

Lipoprotein lipase (LPL) is a key regulator of triglyceride clearance. Its coordinated regulation during feeding and fasting is critical for maintaining lipid homeostasis and energy supply. Angiopoietin-like (Angptl)3 and Angptl4 are secreted proteins that have been demonstrated to regulate triglyceride metabolism by inhibiting LPL. We have taken a targeted genetic approach to generate Angptl4- and Angptl3-deficient mice as well as transgenic mice overexpressing human Angptl4 in the liver. The Angptl4 transgenic mice displayed elevated plasma triglycerides and reduced postheparin plasma (PHP) LPL activity. A purified recombinant Angptl4 protein inhibited mouse LPL and recombinant human LPL activity in vitro. In contrast to the transgenic mice, Angptl4-deficient mice displayed hypotriglyceridemia and increased PHP LPL activity, with greater effects in the fasted compared with the fed state. Angptl3-deficient mice also displayed hypotriglyceridemia with elevated PHP LPL activity, but these mice showed a greater effect in the fed state. Mice deficient in both Angptl proteins showed an additive effect on plasma triglycerides and did not survive past 2 months of age. Our results show that Angptl3 and Angptl4 function to regulate circulating triglyceride levels during different nutritional states and therefore play a role in lipid metabolism during feeding/fasting through differential inhibition of LPL.
Suppressor of cytokine signaling (SOCS)-5 is a potential negative regulator of epidermal growth factor signaling (2005)

The suppressors of cytokine signaling (SOCS) proteins are a family of SH2 domain-containing intracellular inhibitors of cytokine signal transduction that act by several different mechanisms. Recent evidence suggests that the action of the SOCS proteins may extend beyond the cytokine receptors to signaling initiated by members of the tyrosine kinase receptor family. In this study, the ability of SOCS-5 to negatively regulate signaling cascades downstream of the epidermal growth factor receptor (EGF-R) has been examined by using an EGF-responsive cell line engineered to constitutively express the EGF-R and SOCS-5 or SOCS-5 mutants. SOCS-5 associated with the EGF-R complex in an EGF-independent manner, and the mitogenic response to EGF of all SOCS-5-expressing cell lines was dramatically inhibited when compared with control cell lines. Furthermore, this effect was abrogated after deletion of the SOCS-5 SOCS box. This result suggests that the inhibition of signaling occurs through enhanced proteasomal degradation of the EGF-R through SOCS box recruitment of E3 ubiquitin ligase activity.
Crystal structure of NF-κB (p50) 2 complexed to a high-affinity RNA aptamer (2003)

We have recently identified an RNA aptamer for the transcription factor NF-kappaB p50 homodimer [(p50)2], which exhibits little sequence resemblance to the consensus DNA target for (p50)2, but binds (p50)2 with an affinity similar to that of the optimal DNA target. We describe here the 2.45-A resolution x-ray crystal structure of the p50 RHR/RNA aptamer complex. The structure reveals that two RNA molecules bind independent of each other to the p50 N-terminal Ig-like domains. The RNA secondary structure is comprised of a stem and a stem-loop separated by an internal loop folded into a kinked helix because of the cross-strand stacking of three internal loop guanines. These guanines, placed at the edge of the 3' helix, together with the major groove of the irregular 3' helix, form the binding surface for p50. Each p50 monomer uses the same surface to recognize the distorted RNA major groove as observed in the kappaB DNA/p50 RHR complex, resulting in strikingly similar interfaces. The structure reveals how the aptamer specifically selects p50 and discriminates against p65. We also discuss the physiological implications of RNA binding by (p50)2.
Carbohydrate-Based Vaccines (2008)

Glycoconjugate vaccines were developed as efficient therapies against infectious diseases. The immune responses towards glycoconjugates rely on diverse T-cell triggering mechanisms depending on the nature of the carbohydrate antigens. Unfortunately, carbohydrates alone are usually T-cell independent but natural glycoconjugates, such as glycoproteins and glycolipids, are increasingly accepted as antigens directly recognized in T-cell restricted mode. In this review, different types of T-cell activation processes and possible involvements of carbohydrate antigens will be discussed.
Generation of dendritic cells from CD14+ monocytes positively selected by immunomagnetic adsorption for multiple myeloma patients enrolled in a clinical trial of anti‐idiotype vaccination (2003)

Circulating monocytes from multiple myeloma patients enrolled in a clinical study of anti-idiotype vaccination were labelled with clinical-grade anti-CD14 microbeads and positively selected with the CliniMACS instrument. Cells were then grown, according to good manufacturing practice guidelines, in fetal-calf-serum-free medium in cell culture bags and differentiated to dendritic cells (DC) with granulocyte-macrophage colony stimulating factor plus interleukin 4 (IL-4), followed by either tumour necrosis factor-alpha (TNF-alpha) or a cocktail of IL-1beta, IL-6, TNF-alpha and prostaglandin-E2. The CD14+ cell yield was increased from 17.6 +/- 6.5% to 93.8 +/- 6.3% (recovery 64.4 +/- 15.4%, viability > 97%). After cell culture, phenotypic analysis showed that 86.7 +/- 6.8% of the cells were DC: 2.27 +/- 0.9 x 108 DC/leukapheresis were obtained, which represented 20.7 +/- 4.6% of the initial number of CD14+ cells. Notably, the cytokine cocktail induced a significantly higher percentage and yield (28.6 +/- 3% of initial CD14+ cells) of DC than TNF-alpha alone, with secretion of larger amounts of IL-12, potent stimulatory activity on allogeneic T cells and efficient presentation of tumour idiotype to autologous T cells. Storage in liquid nitrogen did not modify the phenotype or functional characteristics of preloaded DC. The recovery of thawed, viable DC was 78 +/- 10%. Finally, interferon-alpha-2b was at least as efficient as IL-4 in inducing the differentiation of mature, functional DC from monocytes.
Recovery of cellular activity in cryopreserved human foetal brain tissue (1995)

Since long-term cryopreservation can cause losses in neural tissue viability and function a prerequisite would be the ability to monitor and promote functional recovery in donor tissue intended for neural transplantation. Rapid assessment of cryopreserved tissue's functional status prior to grafting is presently difficult in a clinical setting. A convenient indicator of functional status may be the level of DNA synthesis activity taking place in the tissue. Using immunocytochemical detection of incorporated bromodeox-yuridine we have quantified and compared DNA synthesis activity (expressed as proliferative capacity (PC)) in human foetal mesencephalic, striatal, cortical and cerebellar tissue before and after a 275-376 day storage in liquid nitrogen. There was a post-storage reduction in viability of 48-73% and in PC of 26-59%; the higher the PC before storage the greater the reduction after. Incubation of cryopreserved tissue with fetal calf serum resulted in 2-4-fold higher PC levels than serum-untreated controls and reached 80% of fresh tissue levels in mesencephalic cells after 3-4 h incubation. Assuming that quantification of proliferative activity is a practical indicator of the tissue's functional status, these findings suggest that treatment of the tissue with serum can largely restore the lost function caused by cryopreservation.
Wnt/β-Catenin signaling acts at multiple developmental stages to promote mammalian cardiogenesis (2008)

Despite decades of progress in cardiovascular biology, heart disease remains the leading cause of death in the developed world. Recently, cell-based therapy has emerged as a promising avenue for future therapeutics. However, the molecular signals that regulate cardiac progenitor cells are not well-understood. Wnt/beta-catenin signaling is essential for expansion and differentiation of cardiac progenitors in mouse embryos and in the embryonic stem cell system. Studies from our laboratory and others highlight the pivotal roles of Wnt/beta-catenin signaling in the multiple steps of cardiogenesis and provide insights into understanding the complex regulation of cardiac progenitors. Here we discuss the required roles of Wnt/beta-catenin signaling at the different stages of heart development.
The SPARKy (Spring Ankle with Regenerative kinetics) project: Choosing a DC motor based actuation method (2008)

The design process of a powered robotic ankle prosthesis presents many obstacles that must be overcome. To be practically implemented, such a mechanism must not only run on batteries, but sustain a long running time between recharging. Using springs to passively and actively store and supply energy to the robotic ankle, small DC motors can be optimized to perform high peak power tasks without sacrificing efficiency and net energy usage. Additional techniques are explored with the potential of substantially reducing the energy requirements as well as the size and weight of the prosthesis. The benefits of adding a unidirectional parallel spring with a Robotic Tendon are weighed and the possibility of actively varying the lever arm at which the spring force is applied is analyzed. The different actuation methods are compared to determine which methods work best in different gait regimes.
Nowcasting quarterly GDP growth in a monthly coincident indicator model (2005)

This paper presents an extension of the Stock and Watson coincident indicator model that allows one to include variables available at different frequencies while taking care of missing observations at any time period. The proposed procedure provides estimates of the unobserved common coincident component, of the unobserved monthly series underlying any included quarterly indicator, and of any missing values in the series. An application to a coincident indicator model for the Portuguese economy is presented. We use monthly indicators from business surveys whose results are published with a very short delay. By using the available data for the monthly indicators and for quarterly real GDP, it becomes possible to produce simultaneously a monthly composite index of coincident indicators and an estimate of the latest quarter real GDP growth well ahead of the release of the first official figures. Copyright © 2005 John Wiley & Son, Ltd.
Security issues and requirements for Internet-scale publish-subscribe systems (2003)

Publish-subscribe is a communication paradigm that supports dynamic, many-to-many communications in a distributed environment. Content-based pub-sub systems are often implemented on a peer-to-peer infrastructure that enables information dissemination from information producers (publishers) to consumers (subscribers) through a subscription mechanism. In a wide-area pub-sub network, the pub-sub service must handle information dissemination across distinct authoritative domains, heterogeneous platforms and a large, dynamic population of publishers and subscribers. Such an environment raises serious security concerns. In this paper, we investigate the security issues and requirements that arise in an internet-scale content-based pub-sub system. We distinguish among those requirements that can be achieved with current technology and those that require innovative solutions.
FGF23 neutralization improves chronic kidney disease–associated hyperparathyroidism yet increases mortality (2012)

Chronic kidney disease-mineral and bone disorder (CKD-MBD) is associated with secondary hyperparathyroidism (HPT) and serum elevations in the phosphaturic hormone FGF23, which may be maladaptive and lead to increased morbidity and mortality. To determine the role of FGF23 in the pathogenesis of CKD-MBD and development of secondary HPT, we developed a monoclonal FGF23 antibody to evaluate the impact of chronic FGF23 neutralization on CKD-MBD, secondary HPT, and associated comorbidities in a rat model of CKD-MBD. CKD-MBD rats fed a high-phosphate diet were treated with low or high doses of FGF23-Ab or an isotype control antibody. Neutralization of FGF23 led to sustained reductions in secondary HPT, including decreased parathyroid hormone, increased vitamin D, increased serum calcium, and normalization of bone markers such as cancellous bone volume, trabecular number, osteoblast surface, osteoid surface, and bone-formation rate. In addition, we observed dose-dependent increases in serum phosphate and aortic calcification associated with increased risk of mortality in CKD-MBD rats treated with FGF23-Ab. Thus, mineral disturbances caused by neutralization of FGF23 limited the efficacy of FGF23-Ab and likely contributed to the increased mortality observed in this CKD-MBD rat model.
Synthesis of Substituted Thienopyrimidine‐4‐ones. (2004)

Abstract For Abstract see ChemInform Abstract in Full Text.
Virosomes: As a Drug Delivery Carrier (2013)

Virosomes are reconstituted viral envelopes that can serve as vaccines and as vehicles for cellular delivery of various macromolecules. The prospect of drug delivery and targeting systems using virosomes is an interesting research and development field. Since virosomes are biocompatible, biodegradable, non-toxic and non-autoimmunogenuic; attempts have been made to utilize them as vaccines or adjuvants as well as delivery systems for drugs and biological for therapeutic purposes. Influenza virus is the most common virus of choice where virosomes are reconstituted influenza virus envelopes devoid of inner nucleic acid core and hence genetic information. The particulate structure and the function of the surface hemagglutinin protein of binding to the cell receptor, mediates pH-dependent membrane fusion leading to cellular delivery of the encapsulated biologically active molecule. Various protein, peptide and malarial drugs are too loaded into virus to deliver at a particular site to provide targeted drug delivery system.
Increased Gamma-ray Activity from the FSRQ PKS 1424-41 (2012)

http://www.astronomerstelegram.org/?read=4494
Distinctive demography, biology, and outcome of acute myeloid leukemia and myelodysplastic syndrome in children with Down syndrome: Children's Cancer Group Studies 2861 and 2891. (1998)

In recent pediatric trials of acute myeloid leukemia (AML), children with Down syndrome (DS) have had significantly more megakaryoblastic leukemia and have experienced better outcome than other children. To further characterize AML in DS, Children's Cancer Group Studies 2861 and 2891 prospectively studied demography, biology, and response in AML and myelodysplastic syndrome (MDS) of children with and without DS. These studies evaluated timing of induction therapy and compared postremission chemotherapy with marrow transplantation in 1,206 children. One-hundred eighteen (9.8%) had DS, a fourfold increase in 20 years. DS patients were younger, had lower white blood cell and platelet counts, more antecedent MDS, acute megakaryoblastic leukemia or undifferentiated AML, and an under-representation of chromosomal translocations (P < .001 for each variable). Four-year event-free survival in DS was 69% versus 35% in others (P < .001). Intensively timed induction conferred significantly higher mortality in DS patients; bone marrow transplantation offered no advantage. Conventional induction followed by chemotherapy achieved an 88%, 4-year, disease-free survival in DS patients versus 42% in others (P < .001). Megakaryoblastic leukemia was unfavorable in others but prognostically neutral in DS. AML in DS is demographically and biologically distinct from AML in other children. It is singularly responsive to conventional chemotherapy and may warrant even less therapy. The increasing proportion of DS patients with AML most likely reflects changes in attitudes about entering DS patients on AML trials and possibly increasing ability to distinguish megakaryoblastic leukemia from lymphoid leukemia.
Polymerization of Styrene with Peroxide Initiator Ionically Bound to High Surface Area Mica (1999)

Mica powders with ultrahigh specific surface areas (ca. 100 m2/g) were treated with aqueous solutions of peroxide radical initiators bearing a single cationic group to exchange the mica surface ions with initiator cations. The stability of the initiators, the adsorption isotherms on the mica, and the adsorption equilibrium constants were measured. The resulting materials initiate the polymerization of styrene at various conditions, forming bound polymer chains in amounts up to ca. 30 wt % polymer (ca. 55 vol %) with respect to the mica. The bound chains could be removed from the surface by extraction with good solvents for poly(styrene) only when the solvent contained ions for ion exchange. On the basis of kinetic evidence, the mechanism of grafting appears to be propagation of free radicals from the surface into the monomer solution, i.e., "growth from the surface". The results differ strongly from those previously obtained with a dicationic surface-bound azo initiator, where grafting was shown to occur by "growth to the surface".
Process integration of self-assembled polymer templates into silicon nanofabrication (2002)

Self-assembled diblock copolymer thin films are used as sacrificial layers for the transfer of dense nanoscale patterns into more robust materials. We detail the processes used to achieve highly uniform nanoporous dielectric films, high-aspect-ratio nanotextured silicon, silicon nitride dot arrays, silicon pillar arrays, and silicon tip arrays. All techniques are compatible with standard semiconductor fabrication processes. We also discuss the possible applications of each resulting nanometer-scale structure, including high surface area substrates for capacitors and biochips, quantum dot arrays for nonvolatile memories, and silicon pillar arrays for vertical transistors or field-emission displays.