gebhart/patrepeval huggingface dataset:
Optimized error correction of MELP speech parameters via maximum a posteriori (MAP) techniques (2003)

The U.S. Government has developed and adopted a new Federal standard vocoder which operates at 2400 bps and is called MELP-mixed excitation linear prediction. This algorithm has quite good voice quality under benign error channel conditions. However, when subjected to high error conditions as may be experienced in vehicular applications, correction techniques may be employed which utilize the underlying inter-frame residual redundancy of the MELP parameters. This paper describes experiments conducted on the MELP algorithm when combined with Viterbi convolutional error decoding, and enhanced with maximum a posteriori techniques which capitalize on the redundancy statistics. Both hard and soft Viterbi decoding situations are investigated.
Adherent Monomer-Misfolded SOD1 (2008)

These results indicate that disease-causing mutant SOD1 likely leads to inadequate protein-protein interactions. This could be an early and crucial process in the pathogenesis of FALS.
CARIN, A CAR INFORMATION AND NAVIGATION SYSTEM (1990)

Description du CARIN, systeme d'information et de navigation automobile utilisant un synthetiseur de parole
Pharmacokinetics, biodistribution and biological effects of intravenously administered bispecific monoclonal antibody OC/TR F(ab′)2 in ovarian carcinoma patients (1996)

The bispecific monoclonal antibody (biMAb) OC/TR combines the anti-ovarian-cancer reactivity of the MOv18 monoclonal antibody (MAb) with the reactivity of an anti-CD3 MAb. Pre-clinical studies have indicated that this biMAb is able to redirect the cytolytic activity of T cells towards tumour cells, resulting in efficient tumour-cell lysis. To assess the clinical potential of systemic biMAb-based cancer therapy we initiated a study in ovarian-cancer patients. Five patients suspected of ovarian cancer received 123I-OC/TR F(ab')2 i.v. Unexpectedly, the first patient developed side effects (grade III-IV toxicity) starting 30 min after infusion (p.i.) of 1 mg of OC/TR F(ab')2. After approval of the Ethical Committee, the study was continued at lower dose levels (0.1 mg; 0.2 mg). However, at the 0.2-mg dose level similar side effects were observed. FACS analysis indicated that all peripheral T cells were coated with biMAb immediately following the infusion. The cytokines tumour necrosis factor-alpha, interferon-gamma and interleukin-2 showed maximum serum concentrations 2 h p.i. Tumour uptake ranged from 0.8 to 1.9% ID/kg, resulting in tumour/background ratios of 3 to 8. Our results suggest that at higher antibody dose levels OC/TR F(ab')2 causes T-cell activation with acute release of cytokines. Only low doses of biMAb can be administered safely. Despite the interaction with T cells, OC/TR F(ab')2 preferentially localizes in tumours following i.v. administration, thus offering therapeutic perspectives.
MGMT methylation: A marker of response to temozolomide in low‐grade gliomas (2006)

The methylation status of the O6-methylguanine-methyltransferase promoter (MGMTP) was evaluated in 68 low-grade gliomas treated by neoadjuvant temozolomide. Methylated MGMTP was detected in 63 of 68 (92.6 %) patients and was a favorable predictor of progression-free survival as compared with unmethylated MGMTP tumors (p < 0.0001). Assessment of MGMTP status could help identifying low-grade gliomas patients more likely to respond to chemotherapy or to benefit from MGMT depletion strategies.
Computational Design of a Biologically Active Enzyme (2004)

Rational design of enzymes is a stringent test of our understanding of protein chemistry and has numerous potential applications. Here, we present and experimentally validate the computational design of enzyme activity in proteins of known structure. We have predicted mutations that introduce triose phosphate isomerase activity into ribose-binding protein, a receptor that normally lacks enzyme activity. The resulting designs contain 18 to 22 mutations, exhibit 10(5)- to 10(6)-fold rate enhancements over the uncatalyzed reaction, and are biologically active, in that they support the growth of Escherichia coli under gluconeogenic conditions. The inherent generality of the design method suggests that many enzymes can be designed by this approach.
Biochemical properties of phosphonoacetate and thiophosphonoacetate oligodeoxyribonucleotides (2003)

Phosphorus-modified phosphonoacetate and thiophosphonoacetate oligodeoxyribonucleotides were chemically synthesized and their biochemical properties evaluated. Under physiological pH, these DNA analogs possess negative charge and form stable, complementary A-like DNA:RNA heteroduplexes when analyzed via circular dichroism spectroscopy. Phosphonoacetate and thiophosphonoacetate oligomers were found to stimulate RNase H activity and to be completely resistant to degradation by snake venom phosphodiesterase, DNase I and HeLa cell nuclear extract. Further research has demonstrated that neutral, esterified forms of these analogs can be taken up by cells. Phosphonoacetate and thiophosphonoacetate oligomers therefore represent a new class of oligodeoxyribonucleotide analogs having phosphorus- carbon bonds with considerable potential for use in biological research.
Bmp and Shh Signaling Mediate the Expression of satb2 in the Pharyngeal Arches (2013)

In human, mutation of the transcription factor SATB2 causes severe defects to the palate and jaw. The expression and sequence of SATB2 is highly conserved across vertebrate species, including zebrafish. We sought to understand the regulation of satb2 using the zebrafish model system. Due to the normal expression domains of satb2, we analyzed satb2 expression in mutants with disrupted Hh signaling or defective ventral patterning. While satb2 expression appears independent of Edn1 signaling, appropriate expression requires Shha, Smo, Smad5 and Hand2 function. Transplantation experiments show that neural crest cells receive both Bmp and Hh signaling to induce satb2 expression. Dorsomorphin- and cyclopamine-mediated inhibition of Bmp and Hh signaling, respectively, suggests that proper satb2 expression requires a relatively earlier Bmp signal and a later Hh signal. We propose that Bmp signaling establishes competence for the neural crest to respond to Hh signaling, thus inducing satb2 expression.
A Highly Unusual Thioester Bond in a Pilus Adhesin Is Required for Efficient Host Cell Interaction* (2010)

Many bacterial pathogens present adhesins at the tips of long macromolecular filaments known as pili that are often important virulence determinants. Very little is known about how pili presented by Gram-positive pathogens mediate host cell binding. The crystal structure of a pilus adhesin from the important human pathogen Streptococcus pyogenes reveals an internal thioester bond formed between the side chains of a cysteine and a glutamine residue. The presence of the thioester was verified using UV-visible spectroscopy and mass spectrometry. This unusual bond has only previously been observed in thioester domains of complement and complement-like proteins where it is used to form covalent attachment to target molecules. The structure also reveals two intramolecular isopeptide bonds, one of these formed through a Lys/Asp residue pair, which are strategically positioned to confer protein stability. Removal of the internal thioester by allele-replacement mutagenesis in S. pyogenes severely compromises bacterial adhesion to model host cells. Although current paradigms of bacterial/host cell interaction envisage strong non-covalent interactions, the present study suggests cell adhesion could also involve covalent bonds.
CRP identifies homeostatic immune oscillations in cancer patients: a potential treatment targeting tool? (2009)

The search for a suitable biomarker which indicates immune system responses in cancer patients has been long and arduous, but a widely known biomarker has emerged as a potential candidate for this purpose. C-Reactive Protein (CRP) is an acute-phase plasma protein that can be used as a marker for activation of the immune system. The short plasma half-life and relatively robust and reliable response to inflammation, make CRP an ideal candidate marker for inflammation. The high- sensitivity test for CRP, termed Low-Reactive Protein (LRP, L-CRP or hs-CRP), measures very low levels of CRP more accurately, and is even more reliable than standard CRP for this purpose. Usually, static sampling of CRP has been used for clinical studies and these can predict disease presence or recurrence, notably for a number of cancers. We have used frequent serial L-CRP measurements across three clinical laboratories in two countries and for different advanced cancers, and have demonstrated similar, repeatable observations of a cyclical variation in CRP levels in these patients. We hypothesise that these L-CRP oscillations are part of a homeostatic immune response to advanced malignancy and have some preliminary data linking the timing of therapy to treatment success. This article reviews CRP, shows some of our data and advances the reasoning for the hypothesis that explains the CRP cycles in terms of homeostatic immune regulatory cycles. This knowledge might also open the way for improved timing of treatment(s) for improved clinical efficacy.
Alkali‐modified soy protein with improved adhesive and hydrophobic properties (1995)

Abstract Adhesive and hydrophobic properties of alkalimodified soy protein (AMSP) and trypsin‐modified soy protein (TMSP) on wood were investigated. Modifying soy protein (i) under moderate alkaline conditions (pH 10.0 at 50°C) and (ii) with trypsin, enhanced adhesive strengths (730 and 743 N, respectively) compared with unmodified soy protein (340 N). Hydrophobicities of AMSP, TMSP, and unmodified soy protein isolate by sodium dodecyl sulfate binding and 1‐anilino‐8‐naphthalene sulfonate methods were 7.6, 6.4, 5.0 and 39, 27, 13, respectively. Modified soy protein adhesives with higher hydrophobicities (AMSP and TMSP) had enhanced water‐resistance properties.
Vagal Afferent Stimulation as a Cardioprotective Strategy? Introducing the Concept (2005)

The effect of vagal afferent signaling on cardioinhibition has been well known for over 130 years. Both experimental and clinical studies have demonstrated not only the potential adverse effect of unrestrained sympathoexcitation in high risk patients with ischemic heart disease but the potential for cardioprotection by programmed vagal activity. The vasodepressor and negative chronotropic effects of efferent vagal stimulation has been a cause for concern. However it is becoming clear that favorable shifts towards increased cardiac vagal modulation can be achieved by vagal afferent nerve stimulation. This phasic effect appears to operate though central medullary pathways. Thus by engaging vagal afferent fibers in humans there is the possibility that one can exploit the benefits of central cardioinhibition without adversely affecting heart rate, respiration or hemodynamics. This commentary explores the background and rationale for considering vagal afferent stimulation as a plausible cardioprotective strategy.
Strudel---an extensible electronic conversation toolkit (1990)

This paper describes the conceptual model of Strudel, a toolkit of generic components for conversation and action management. To empower work groups to more effectively conduct their computer-based communication, coordination, and information sharing activities, Strudel packages within a simple model of task and action the semi-structured message, active message and conversation management paradigms. To facilitate acceptance and use within varying work cultures, we define this model in terms of a set of extensible components, which are implemented as a prototype software toolkit that is efficient, portable, customizable, and extensible. Issues considered briefly in this paper include threading in conversations that are converging or multi-party, and interoperability between active message systems.
Analgesia by low-frequency nerve stimulation mediated by low-threshold afferents in rats (1988)

Several authors claim that analgesia by low-frequency peripheral nerve stimulation (transcutaneously or through inserted needles) depends on the activation of small-diameter A delta afferents. In the present study, a marked increase in pain threshold assessed by the squeak threshold test (vocalization to electric shocks delivered to the tail) was obtained by 2 Hz sciatic or radial nerve low-intensity stimulation, using single pulses. Conduction velocities of the activated nerve fibers ranged between 33.6 and 46.4 m/sec, which is consistent with activation of large afferent A fibers. This analgesic effect was reversed by naloxone (3 mg/kg i.v.). Thus, low-threshold afferents may contribute to the analgesic effect in addition to the previously reported high-threshold induced effect. High-intensity stimulation (5-6 times the threshold for visible muscular twitches), activating small-diameter afferents (A delta fibers) resulted in a decrease in pain threshold. Hyperalgesia also resulted from low-intensity stimulation using trains of pulses. The analgesic or hyperalgesic effects were correlated with the animal's behavior during stimulation. Analgesia was obtained in calm rats, who went to sleep regularly. When the rats showed signs of being distressed, hyperalgesia resulted. These findings may explain the occasional failure to obtain reduction in pain in anxious human patients by peripheral stimulation.
Neuroprotective and Nootropic Actions of a Novel Cyclized Dipeptide after Controlled Cortical Impact Injury in Mice (2003)

1-ARA-35b (35b) is a cyclized dipeptide that shows considerable neuroprotective activity in vitro and improves neurologic recovery after fluid percussion-induced traumatic brain injury in rats. The authors evaluated the effects of treatment with 35b in mice subjected to controlled cortical impact brain injury. Animals treated with intravenous 35b after traumatic injury showed significantly enhanced recovery of beam walking and place learning functions compared with vehicle-treated controls, in addition to reduced lesion volumes. Beneficial effects were dose related and showed an inverted U-shaped dose-response curve between 0.1 and 10 mg/kg. Protective actions were found when the drug was administered initially at 30 minutes or 1, 4, or 8 hours, but not at 24 hours, after trauma. In separate experiments, rats treated with 35b on days 7 through 10 after injury showed remarkably improved place learning in comparison with injured controls. These studies confirm and extend the neuroprotective effects of this diketopiperazine in traumatic brain injury. In addition, they show that 35b has a relatively wide therapeutic window and improves cognitive function after both acute and chronic injury.
Anchor Structure of Staphylococcal Surface Proteins (1999)

Surface proteins of Staphylococcus aureus are covalently linked to the bacterial cell wall by a mechanism requiring a COOH-terminal sorting signal with a conserved LPXTG motif. Cleavage between the threonine and the glycine of the LPXTG motif liberates the carboxyl of threonine to form an amide bond with the amino of the pentaglycine cross-bridge in the staphylococcal peptidoglycan. We asked whether antibiotic cell wall synthesis inhibitors interfere with the anchoring of surface proteins. Penicillin G, a transpeptidation inhibitor, had no effect on surface protein anchoring, whereas vancomycin and moenomycin, inhibitors of cell wall polymerization into peptidoglycan strands, slowed the sorting reaction. Cleavage of surface protein precursors did not require a mature assembled cell wall and was observed in staphylococcal protoplasts. A search for chemical inhibitors of the sorting reaction identified methanethiosulfonates and p-hydroxymercuribenzoic acid. Thus, sortase, the enzyme proposed to cleave surface proteins at the LPXTG motif, appears to be a sulfhydryl-containing enzyme that utilizes peptidoglycan precursors but not an assembled cell wall as a substrate for the anchoring of surface protein.
Chromatographic Separation and in Vitro Activity of Sorgoleone Congeners from the Roots of Sorghum bicolor (2003)

Sorgoleone, 2-hydroxy-5-methoxy-3-[(8'Z,11'Z)-8',11',14'-pentadecatriene]-p-benzoquinone (1), and its corresponding hydroquinone are the major components of the root exudate of Sorghum bicolor. The name sorgoleone includes minor analogues differing in the length or degree of unsaturation of the 3-alkyl side chain. These compounds are known to be phytotoxic, probably through inhibition of photosystem II (PSII) driven oxygen evolution, as previously demonstrated for 1. Isolation of these sorgoleone congeners was achieved by C(8) column chromatography and argentation thin-layer chromatography, and the purified compounds were structurally characterized. The abilities of the minor sorgoleones to inhibit PSII were similar to that of the major compound, suggesting that all of these sorgoleone congeners contribute to the overall allelopathy of sorghum.
Epigenetic Reprogramming of Human Embryonic Stem Cells into Skeletal Muscle Cells and Generation of Contractile Myospheres (2013)

Direct generation of a homogeneous population of skeletal myoblasts from human embryonic stem cells (hESCs) and formation of three-dimensional contractile structures for disease modeling in vitro are current challenges in regenerative medicine. Previous studies reported on the generation of myoblasts from ESC-derived embryoid bodies (EB), but not from undifferentiated ESCs, indicating the requirement for mesodermal transition to promote skeletal myogenesis. Here, we show that selective absence of the SWI/SNF component BAF60C (encoded by SMARCD3) confers on hESCs resistance to MyoD-mediated activation of skeletal myogenesis. Forced expression of BAF60C enables MyoD to directly activate skeletal myogenesis in hESCs by instructing MyoD positioning and allowing chromatin remodeling at target genes. BAF60C/MyoD-expressing hESCs are epigenetically committed myogenic progenitors, which bypass the mesodermal requirement and, when cultured as floating clusters, give rise to contractile three-dimensional myospheres composed of skeletal myotubes. These results identify BAF60C as a key epigenetic determinant of hESC commitment to the myogenic lineage and establish the molecular basis for the generation of hESC-derived myospheres exploitable for "disease in a dish" models of muscular physiology and dysfunction.
A single-chip CMOS direct-conversion transceiver for 900 MHz spread-spectrum digital cordless phones (2003)

This fully-integrated transceiver incorporates RF circuits, synthesizer, baseband filters, demodulator, and digital signal processing. The few off-chip components include an ISM band filter, a balun, an RF matching network, an RC loop filter for the PLL, a crystal resonator, and a resistor for biasing. A transmit/ receive (T/R) switch is avoided by sharing a single RF port between transmitter and receiver. An offset cancellation method attenuates offsets in the baseband without sacrificing bandwidth in the direct conversion receiver. Careful circuit design, timing, and layout considerations provide isolation between the sensitive RF signals and the digital switching noise. The IC is in 0.6/spl mu/m CMOS and provides a complete interface between antenna and voiceband codec.
The roles of stem cell memory T cells in hematological malignancies (2015)

Adoptive cell therapy (ACT) is rapidly migrating from bench to clinical therapy for hematological malignancies. Recently, a new subtype of memory T cells, stem cell memory T (TSCM) cells, was shown to be one of the most favorable subsets for ACT. TSCM has high self-renewal capacity and is associated with superior T cell engraftment, persistence, and antitumor immunity. In this review, we focused on the characteristics of antigen-specific TSCM cells and discussed their potential for immunotherapy targeting hematological malignancies.
Future directions of Silicon IC's for RF personal communications (1995)

This paper presents an overview of technical challenges in achieving higher integration levels, lower power dissipation, smaller form factor, and lower cost in portable battery-powered RF transceivers for personal communications applications. Specific emphasis is placed on silicon integrated circuits for transceivers in the 800MHz-2.5GHz range of frequencies. Introduction Digital radio personal communications devices utilizing the bands between 800MHz and 2.5GHz will play an increasingly important role in the overall communications infrastructure in the next decade. In addition, the bands above 2.5GHz, where large, relatively untapped blocks of spectrum are available, will receive increasing use as transceiver costs in this frequency range are brought down. Compared to other types of integrated circuits, the level of integration in the RF sections of such transceivers is still relatively low. Considerations of power dissipation, form factor, and cost dictate that the RF/IF portions ...
A CONVENIENT METHOD FOR THE SYNTHESIS OF CARBOXYLIC ESTERS (1975)

Abstract The equimolar reactions of carboxylic acids and alcohols with 1-methyl-2-halopyridinium salts in the presence of two equimolar amounts of tri-n-butylamine afforded the corresponding carboxylic esters in good yields.
Steroid Receptor Family: Structure and Functions (1990)

Steroid receptors are a class of molecules that function as both signal transducers and transcription factors. From cloned sequences it is apparent that steroid receptors and other transcription factors belong to a superfamily of proteins that appear to function by similar mechanisms. Functional domains for hormone and DNA binding, and for transcriptional activation, have been defined for several receptors. In some cases, specific amino acids required for function have been identified. The multi-functional steroid receptor molecules are modular in nature in that domains function independently of structural position in receptor molecules and can even function after insertion into unrelated transactivation proteins. The mechanism of receptor action is complex and multistage and a number of unanswered questions remain to be defined. Receptors are inactive in the absence of hormone in vivo; the proposed components of this inactive complex include several proteins and RNA. Theories on the physiological role of HSP 90 in this complex range from an artifactual interaction to an absolute conformational requirement for hormone binding. Although its function has not been demonstrated clearly yet, there is a consensus that one major function is to inactivate receptor by blocking DNA binding. Most of the steroid receptors appear to be nuclear in the absence of hormone. The transformation process produces a receptor molecule that is capable of specific DNA binding and transcriptional activation. The specificity of DNA binding is conferred by as few as three amino acids in the first finger of the C1 region. Receptors appear to bind to DNA as dimers although whether dimers are preformed in cytoplasm remains unknown. Although the DNA binding domain is required for gene activation, other regions of the molecule in the carboxyl and amino terminus enhance activation function. Important interactions of steroid receptors with other receptors and unrelated transcription factors has been proposed and most certainly occurs. Finally, posttranslational modifications such as phosphorylation have been postulated to modulate several functional properties of steroid receptors.