gebhart/patrepeval huggingface dataset:
Activation of a mitogen-activated protein kinase pathway is involved in disease resistance in tobacco (2001)

Hypersensitive response (HR), a form of programmed cell death, is frequently associated with plant disease resistance. It has been proposed that mitogen-activated protein kinase (MAPK) cascades regulate HR cell death based on pharmacological studies by using kinase inhibitors. However, direct evidence is lacking. Here, we demonstrate that NtMEK2, a MAPK kinase, is upstream of salicylic acid-induced protein kinase (SIPK) and wounding-induced protein kinase (WIPK), two tobacco MAPKs that are activated by various pathogens or pathogen-derived elicitors. Expression of a constitutively active mutant of NtMEK2 induces HR-like cell death in tobacco, which is preceded by the activation of endogenous SIPK and WIPK. In addition, NtMEK2-SIPK/WIPK cascade appears to control the expression of 3-hydroxy-3-methylglutaryl CoA reductase (HMGR) and l-phenylalanine ammonia lyase (PAL), two defense genes encoding key enzymes in the phytoalexin and salicylic acid biosynthesis pathways. These results demonstrate that a plant MAPK cascade controls multiple defense responses against pathogen invasion.
RF-Driven Josephson Bifurcation Amplifier for Quantum Measurement (2004)

We have constructed a new type of amplifier whose primary purpose is the readout of superconducting quantum bits. It is based on the transition of a rf-driven Josephson junction between two distinct oscillation states near a dynamical bifurcation point. The main advantages of this new amplifier are speed, high sensitivity, low backaction, and the absence of on-chip dissipation. Pulsed microwave reflection measurements on nanofabricated Al junctions show that actual devices attain the performance predicted by theory.
Nanometal-Decorated Exfoliated Graphite Nanoplatelet Based Glucose Biosensors with High Sensitivity and Fast Response (2008)

We report the novel fabrication of a highly sensitive, selective, fast responding, and affordable amperometric glucose biosensor using exfoliated graphite nanoplatelets (xGnPs) decorated with Pt and Pd nanoparticles. Nafion was used to solubilize metal-decorated graphite nanoplatelets, and a simple cast method with high content organic solvent (85 wt %) was used to prepare the biosensors. The addition of precious metal nanoparticles such as platinum (Pt) and palladium (Pd) to xGnP increased the electroactive area of the electrode and substantially decreased the overpotential in the detection of hydrogen peroxide. The Pt-xGnP glucose biosensor had a sensitivity of 61.5+/-0.6 microA/(mM x cm(2)) and gave a linear response up to 20 mM. The response time and detection limit (S/N=3) were determined to be 2 s and 1 microM, respectively. Therefore, this novel glucose biosensor based on the Pt nanoparticle coated xGnP is among the best reported to date in both sensing performance and production cost. In addition, the effects of metal nanoparticle loading and the particle size on the biosensor performance were systematically investigated.
Ligand-stabilized metal clusters and colloids: properties and applications (1996)

In this perspective some general phenomena of ligand-stabilized transition-metal clusters and colloids are introduced before some recent results on the special behaviour of such particles in catalysis are given.
Experimental characterization of thermally-activated artificial muscles based on coiled nylon fishing lines (2015)

The discovery of an innovative class of thermally activated actuators based on twisted polymeric fibres has opened new horizons toward the development of effective devices that can be easily manufactured using inexpensive materials such as fishing lines or sewing threads. These new devices show large deformations when heated together with promising performance in terms of energy and power densities. With the aim of providing information and data useful for the future engineering applications, we present the results of a thermo-mechanical characterization conducted on a specific type of twisted polymeric fibre (i.e. nylon-made coiled actuators) that is considered particularly promising. A custom experimental test-bench and procedure have been developed and employed to run isothermal and isometric tensile tests on a set of specimens that are fabricated with a simple and repeatable process. The results of the experiments highlight some important issues related to the response of these actuators such as hysteresis, repeatability, predictability and stored elastic energy.
Lumbar Bone Mineral Density in Prostate Cancer Patients with Bone Metastases (2003)

Our results show that patients of prostate cancers with lumbar spine metastases demonstrated by Tc-99m MDP bone scan have increased BMD in the lumbar spines, possibly because of a predominance of osteoblastic over osteolytic metastases demonstrated by Tc-99m MDP bone scan.
Local label learning (LLL) for subcortical structure segmentation: Application to hippocampus segmentation (2013)

Automatic and reliable segmentation of subcortical structures is an important but difficult task in quantitative brain image analysis. Multi-atlas based segmentation methods have attracted great interest due to their promising performance. Under the multi-atlas based segmentation framework, using deformation fields generated for registering atlas images onto a target image to be segmented, labels of the atlases are first propagated to the target image space and then fused to get the target image segmentation based on a label fusion strategy. While many label fusion strategies have been developed, most of these methods adopt predefined weighting models that are not necessarily optimal. In this study, we propose a novel local label learning strategy to estimate the target image's segmentation label using statistical machine learning techniques. In particular, we use a L1-regularized support vector machine (SVM) with a k nearest neighbor (kNN) based training sample selection strategy to learn a classifier for each of the target image voxel from its neighboring voxels in the atlases based on both image intensity and texture features. Our method has produced segmentation results consistently better than state-of-the-art label fusion methods in validation experiments on hippocampal segmentation of over 100 MR images obtained from publicly available and in-house datasets. Volumetric analysis has also demonstrated the capability of our method in detecting hippocampal volume changes due to Alzheimer's disease.
RFID-based supply chain partner authentication and key agreement (2009)

The growing use of RFID in supply chains brings along an indisputable added value from the business perspective, but raises a number of new interesting security challenges. One of them is the authentication of two participants of the supply chain that have possessed the same tagged item, but that have otherwise never communicated before. The situation is even more complex if we imagine that participants to the supply chain may be business competitors. We present a novel cryptographic scheme that solves this problem. In our solution, users exchange tags over the cycle of a supply chain and, if two entities have possessed the same tag, they agree on a secret common key they can use to protect their exchange of business sensitive information. No rogue user can be successful in a malicious authentication, because it would either be traceable or it would imply the loss of a secret key, which provides a strong incentive to keep the tag authentication information secret and protects the integrity of the supply chain. We provide game-based security proofs of our claims, without relying on the random oracle model.
Noradrenaline contractions of human prostate mediated by α1c‐(α1c‐) adrenoceptor subtype (1995)

1. The subtype of alpha 1-adrenoceptor mediating contractions of human prostate to noradrenaline was characterized by use of a range of competitive and non-competitive antagonists. 2. Contractions of the prostate to either noradrenaline (pD2 5.5), phenylephrine (pD2 5.1) or methoxamine (pD2 4.4) were unaltered by the presence of neuronal and extraneuronal uptake blockers. Noradrenaline was about 3 and 10 times more potent than phenylephrine and methoxamine respectively. Phenylephrine and methoxamine were partial agonists. 3. Pretreatment with the alkylating agent, chlorethylclonidine (10(-4M) shifted the noradrenaline concentration-contraction curve about 3 fold to the right and depressed the maximum response by 31%. This shift is 100 fold less than that previously shown to be produced by chlorethylclonidine under the same conditions on alpha 1B-adrenoceptor-mediated contractions. 4. Cumulative concentration-contraction curves for noradrenaline were competitively antagonized by WB 4101 (pA2 9.0), 5-methyl-urapidil (pA2 8.6), phentolamine (pA2 7.6), benoxathian (pA2 8.5), spiperone (pA2 7.3), indoramin (pA2 8.2) and BMY 7378 (pA2 6.6). These values correlated best with published pKi values for their displacement of [3H]-prazosin binding on membranes expressing cloned alpha 1c-adrenoceptors and poorly with values from cloned alpha 1b- and alpha 1d-adrenoceptors. 5. The good correlation between the functional data on the prostate and the binding data on the expressed alpha 1c-subtype clone for the affinities of the competitive antagonists suggests that they are the same subtype. As the expressed alpha 1c-adrenoceptor clone corresponds to the alpha 1A-adrenoceptor expressed in tissues, contraction of the human prostate to noradrenaline is therefore mediated by an alpha 1A-adrenoceptor.
The Mark–Houwink–Sakurada Equation for the Viscosity of Linear Polyethylene (1985)

In this review, the parameters K and α found in the literature for the Mark–Houwink–Sakurada equation relating viscosity to molecular weight have been critically evaluated for linear polyethylene, and values have been recommended for six commonly used solvents. These are decalin, 1,2,4-tricholorobenzene, 1-chloronaphthalene, tetralin, o-dichlorobenzene, and p-xylene. In addition, the literature values of K for several different theta solvents are presented.
A study of knowledge and behaviour of young men in rural NSW regarding testicular cancer and testicular self-examination (1999)

The early detection and treatment of disease is crucial to achieving bettercommunity health. Early detection relies on individuals having the knowledge,ability and motivation to regularly perform self health checks and to seek healthcare services when early signs and symptoms of disease are identified. Isssuesaffecting womens health have been addressed with considerable success inrecent times. Ford (1998) maintains, however, that men are dying from largelypreventable diseases and injuries. An understanding of health knowledge andbehaviour among males is essential if community health promotion activity andhealth education programs are to be successful.
Isolation of human platelet membrane microparticles from plasma and serum (1982)

Methods have been developed to isolate human platelet membrane fragments from plasma and serum. Rabbit antibody produced against the human platelet membrane glycoprotein complex, IIb/IIIa, was utilized in an immunoelectrophoretic assay to evaluate the amount of this antigen in various microparticle preparations. The serum concentration of platelet microparticles was more than tenfold greater than that observed for plasma (65 micrograms/ml versus 4.4 micrograms/ml, respectively). Ultrastructural evaluation of either plasma or serum-derived microparticles disclosed a variety of membrane fragments and membrane-bound vesicles with occasional fragments of red blood cells, white blood cells, and platelets. In contrast, microparticle preparations derived from isolated washed platelets after thrombin stimulation contained a heterogeneous array of membrane fragments, vesicles, and granules but no identifiable red cell, white cell, or platelet fragments. Thus, these studies demonstrate that normal human plasma and serum contain platelet membrane fragments that are produced during cell activation. If a similar loss of platelet membranes occurs in vivo following reversible platelet activation, it is possible that the resulting membrane modifications may be of importance in both the structural and functional changes that develop during platelet senescence.
Synthetic Routes to Solution-Processable Polycyclopentadithiophenes (2003)

Three synthetic protocols have been employed to prepare solution-processable poly(4,4-dialkylcyclopentadithiophenes). These polymers are fused-ring analogues of poly(3-alkylthiophenes) and structural analogues of the polyfluorenes. Oxidative polymerization of 4,4-dialkylcyclopenta[2,1-b;3,4-b‘]dithiophenes using iron (III) chloride gave high-molecular-weight polymers, whereas nickel-catalyzed polymerization of the 2,6-dibromo derivatives via in situ-generated thienylmagnesium and thienylzinc reagents gave moderate-molecular-weight polymers. The structures of the polymers were confirmed by NMR spectroscopy and MALDI-TOF mass spectrometry. In the polymerization using organomagnesium intermediates, some chain capping by methyl end groups was observed. This side reaction can be avoided by polymerization of the organozinc reagents. Post-functionalization of the halogen termini of these polymers can be readily achieved using a cross-coupling with an aryl Grignard reagent. The main chain conjugation in these polymers can be directly correlated to the length of the polymer backbone because the UV−vis spectra of fractionated samples show absorption maxima that increase with the average degree of polymerization as determined by GPC, up to a limiting value of ∼20. UV−vis spectroscopy suggests that poly(4,4-dialkylcyclopentadithiophenes) do not self-assemble in the solid state, as has been previously observed for regioregular poly-3-alkylthiophenes.
Differential neuroprotective and antiinflammatory effects of estrogen receptor (ER)α and ERβ ligand treatment (2007)

Treatment with either estradiol or an estrogen receptor (ER)alpha ligand has been shown to be both antiinflammatory and neuroprotective in a variety of neurological disease models, but whether neuroprotective effects could be observed in the absence of an antiinflammatory effect has remained unknown. Here, we have contrasted effects of treatment with an ERalpha vs. an ERbeta ligand in experimental autoimmune encephalomyelitis, the multiple sclerosis model with a known pathogenic role for both inflammation and neurodegeneration. Clinically, ERalpha ligand treatment abrogated disease at the onset and throughout the disease course. In contrast, ERbeta ligand treatment had no effect at disease onset but promoted recovery during the chronic phase of the disease. ERalpha ligand treatment was antiinflammatory in the systemic immune system, whereas ERbeta ligand treatment was not. Also, ERalpha ligand treatment reduced CNS inflammation, whereas ERbeta ligand treatment did not. Interestingly, treatment with either the ERalpha or the ERbeta ligand was neuroprotective, as evidenced by reduced demyelination and preservation of axon numbers in white matter, as well as decreased neuronal abnormalities in gray matter. Thus, by using the ERbeta selective ligand, we have dissociated the antiinflammatory effect from the neuroprotective effect of estrogen treatment and have shown that neuroprotective effects of estrogen treatment do not necessarily depend on antiinflammatory properties. Together, these findings suggest that ERbeta ligand treatment should be explored as a potential neuroprotective strategy in multiple sclerosis and other neurodegenerative diseases, particularly because estrogen-related toxicities such as breast and uterine cancer are mediated through ERalpha.
Dna2 Exhibits a Unique Strand End-dependent Helicase Function (2010)

Dna2 endonuclease/helicase participates in eukaryotic DNA transactions including cleavage of long flaps generated during Okazaki fragment processing. Its unusual substrate interaction consists of recognition and binding of the flap base, then threading over the 5'-end of the flap, and cleaving periodically to produce a terminal product ∼5 nt in length. Blocking the 5'-end prevents cleavage. The Dna2 ATP-driven 5' to 3' DNA helicase function promotes motion of Dna2 on the flap, presumably aiding its nuclease function. Here we demonstrate using two different nuclease-dead Dna2 mutants that on substrates simulating Okazaki fragments, Dna2 must thread onto an unblocked 5' flap to display helicase activity. This requirement is maintained on substrates with single-stranded regions thousands of nucleotides in length. To our knowledge this is the first description of a eukaryotic helicase that cannot load onto its tracking strand internally but instead must enter from the end. Biologically, the loading requirement likely helps the helicase to coordinate with the Dna2 nuclease function to prevent creation of undesirably long flaps during DNA transactions.
Magnesium Sulphate Therapy in Women with Pre-Eclampsia and Eclampsia in Kuwait (2008)

Magnesium sulphate was effective in preventing recurrence of eclamptic fits and safe for both mother and fetus.
Recent Approaches in Insulin Delivery (1998)

Insulin remains indispensable in the management of diabetes mellitus since its discovery in 1921. The foreignness of early available porcine and bovine insulin led to the development of human insulin by transpeptidation and biosynthesis in microorganisms. Needle phobia and stress of multiple daily injections led to the investigation and exploitation of all promising routes, ranging from nasal to rectal, by a wide variety of devices and delivery systems. This article describes the development of human insulin, various routes for delivery of insulin (including oral, nasal, buccal, rectal, and pulmonary), and various devices for regulated, safe, and convenient insulin delivery. The article reviews some recent advances in insulin delivery such as the bioresponsive and self-regulated insulin delivery system.
Purification, Characterisation and cDNA Sequencing of Pyruvate Decarboxylase from Zygosaccharomyces bisporus (2000)

Cells of the wild-type yeast strain Zygosaccharomyces bisporus CBS 702 form alpha-hydroxy ketones from aromatic amino acid precursors during fermentation. Pyruvate decarboxylase (PDC, E.C. 4.1.1.1), the key enzyme of this biotransformation catalysing the non-oxidative decarboxylation of pyruvate and other 2-oxo-acids, was purified and characterised. The active enzyme is homotetrameric (alpha4) with a molecular mass of about 244 kDa. Activation of PDC by its substrate pyruvate results in a sigmoidal dependence of the reaction rate from substrate concentration (apparent Km value 1.73 mM; Hill coefficient 2.10). A cDNA library was screened using a PCR-based procedure, and a 1856 bp cDNA of PDC was identified and sequenced. The cDNA encodes a polypeptide of 563 amino acid residues (monomeric unit). Sequence alignments demonstrate high homologies (> 80%) to PDC genes from Saccharomyces cerevisiae, Kluyveromyces lactis and Kluyveromyces marxianus.
Analysis of Endoglin Expression in Normal Brain Tissue and in Cerebral Arteriovenous Malformations (2000)

This is the first report of endoglin expression on adventitia of normal brain arteries and on arterialized veins in cerebral AVMs. Increasing numbers of endoglin-positive endothelial and adventitial cells were seen in sporadic cerebral AVMs, but endoglin density was normal. Thus, it is not involved in the generation of these lesions. However, the presence of endoglin on fibroblasts in the perivascular stroma suggests an active role for this protein in vascular remodeling in response to increased blood flow and shear stress.
The role of chemokines in tissue inflammation and autoimmunity in renal diseases (1998)

Chemokines are an expanding family of chemoattractant polypeptides involved in the extravasation of leukocytes during the inflammatory process. This review highlights recent advances in the field, including the discovery of a new class of chemokines, and several novel receptors. In addition, the expanding role of chemokines in pathologic processes other than extravasation and their potential as therapeutic targets are discussed.
Citicoline Treatment Increases Retinal Dopamine Content in Rabbits (2002)

Citicoline (exogenous cytidine-5'-diphosphocholine) was reported to enhance dopaminergic neurotransmission in the brain. A few clinical studies showed beneficial effects of this drug on the function of the visual pathway in patients with glaucoma or amblyopia. The present study was aimed at determining whether citicoline could influence retinal catecholamine levels in adult male Albino rabbits. The animals received the drug (50 mg/kg i.p., twice daily) or vehicle for 7 days, and retinal catecholamine concentrations were determined by HPLC. Compared to vehicle-treated controls, citicoline-treated animals displayed a significantly higher retinal dopamine concentration and a tendency toward an increase in adrenaline concentration, while the noradrenaline concentration remained unchanged. It is, therefore, conceivable that citicoline reinforces dopaminergic transmission in the retina.
Avoidance of Palpable Corporal Fibrosis Due to Priapism with Upregulators of Nitric Oxide (2006)

An antifibrotic regimen consisting of upregulators of NO production may ameliorate the corporal fibrosis associated with recalcitrant priapism.
Stent-Based Delivery of Sirolimus Reduces Neointimal Formation in a Porcine Coronary Model (2001)

Stent-based delivery of SRL via a nonerodable polymer matrix is feasible and effectively reduces in-stent neointimal hyperplasia by inhibiting cellular proliferation.
Causes of Failure in Web Applications (CMU-PDL-05-109) (2018)

This report investigates the causes and prevalence of failure in Web applications. Data was collected by surveying case studies of system failures and by examining incidents of website outages listed on technology websites such as CNET.com and eweek.com. These studies suggest that software failures and human error account for about 80% of failures. The report also contains an appendix that serves as a quick reference for common failures observed in Web applications. This appendix lists over 40 incidents of real-world site outages, outlining how these failures were detected, the estimated downtime, and the subsequent recovery action.
mTOR inhibitors radiosensitize PTEN‐deficient non‐small‐cell lung cancer cells harboring an EGFR activating mutation by inducing autophagy (2012)

Clinical resistance to gefitinib, an epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor (TKI), in patients with lung cancer has been linked to acquisition of the T790M resistance mutation in activated EGFR or amplification of MET. Phosphatase and tensin homolog (PTEN) loss has been recently reported as a gefitinib resistance mechanism in lung cancer. The aim of this study was to evaluate the efficacy of radiotherapy in non-small-cell lung cancer (NSCLC) with acquired gefitinib resistance caused by PTEN deficiency to suggest radiotherapy as an alternative to EGFR TKIs. PTEN deficient-mediated gefitinib resistance was generated in HCC827 cells, an EGFR TKI sensitive NSCLC cell line, by PTEN knockdown with a lentiviral vector expressing short hairpin RNA-targeting PTEN. The impact of PTEN knockdown on sensitivity to radiation in the presence or absence of PTEN downstream signaling inhibitors was investigated. PTEN knockdown conferred acquired resistance not only to gefitinib but also to radiation on HCC827 cells. mTOR inhibitors alone failed to reduce HCC827 cell viability, regardless of PTEN expression, but ameliorated PTEN knockdown-induced radioresistance. PTEN knockdown-mediated radioresistance was accompanied by repression of radiation-induced cytotoxic autophagy, and treatment with mTOR inhibitors released the repression of cytotoxic autophagy to overcome PTEN knockdown-induced radioresistance in HCC827 cells. These results suggest that inhibiting mTOR signaling could be an effective strategy to radiosensitize NSCLC harboring the EGFR activating mutation that acquires resistance to both TKIs and radiotherapy due to PTEN loss or inactivation mutations.