gebhart/patrepeval huggingface dataset:
Novel Cross-Linked Polyphosphonate for the Removal of Pb2+ and Cu2+ from Aqueous Solution (2012)

A novel cross-linked polyzwitterionic acid (CPZA) was synthesized via cyclopolymerization of diallylaminomethylphosphonic acid (90 mol %) and 1,1,4,4-tetraallylpiperazinium dichloride (10 mol %), a cross-linker, with sulfur dioxide in the presence of azoisobutyronitrile (AIBN) in dimethylsulfoxide (DMSO) at 65 °C. CPZA, upon treatment with NaOH, was converted into a cross-linked anionic polyelectrolyte (CAPE). The experimental data for the adsorption of Pb2+ and Cu2+ on CAPE fitted the Lagergren second-order kinetic model as well as Langmuir and Freundlich isotherm models. The adsorption capacity of Pb2+ was higher than that of Cu2+, and the rate of adsorption of both metals was found to be almost equal. The maximum adsorption capacity of Pb2+ and Cu2+ were determined to be 2.76 and 2.22 mmol g–1, respectively. The adsorption process was spontaneous and endothermic in nature with negative and positive values for ΔG and ΔH, respectively. The relatively low activation energies of 25.5 and 27.1 kJ/mol for Pb2+ and Cu2+, respectively, indicated the adsorption as a favorable process. The excellent adsorption and very good desorption efficiency implied the efficacy of the resin in removing as well as recovering the metal ions from aqueous solution. An efficient synthetic access to the resin would enable its use in the treatment of contaminated wastewater.
Surface-based lipid vesicle reactor systems: fabrication and applications (2007)

Over the last ten years there has been a strong (bio)technological drive for the development of miniaturised reaction systems, motivated mainly by the need to reduce sample consumption and parallelise. Self-assembled soft-matter containers have naturally evolved to handle small volumes and could provide viable fluidic solutions especially in niche areas where ultra-miniaturisation, biocompatibility or cost are of critical importance. Here we focus on nanocontainers that are made of lipids and are immobilised on surfaces. We will highlight the most prominent contributions to date on the fabrication and the applications of surface-based vesicle systems as miniaturised reactors. Emphasis will be put on single-vesicle experiments.
Mechanisms of the Anti-Obesity Effects of Oxytocin in Diet-Induced Obese Rats (2011)

Apart from its role during labor and lactation, oxytocin is involved in several other functions. Interestingly, oxytocin- and oxytocin receptor-deficient mice develop late-onset obesity with normal food intake, suggesting that the hormone might exert a series of beneficial metabolic effects. This was recently confirmed by data showing that central oxytocin infusion causes weight loss in diet-induced obese mice. The aim of the present study was to unravel the mechanisms underlying such beneficial effects of oxytocin. Chronic central oxytocin infusion was carried out in high fat diet-induced obese rats. Its impact on body weight, lipid metabolism and insulin sensitivity was determined. We observed a dose-dependent decrease in body weight gain, increased adipose tissue lipolysis and fatty acid β-oxidation, as well as reduced glucose intolerance and insulin resistance. The additional observation that plasma oxytocin levels increased upon central infusion suggested that the hormone might affect adipose tissue metabolism by direct action. This was demonstrated using in vitro, ex vivo, as well as in vivo experiments. With regard to its mechanism of action in adipose tissue, oxytocin increased the expression of stearoyl-coenzyme A desaturase 1, as well as the tissue content of the phospholipid precursor, N-oleoyl-phosphatidylethanolamine, the biosynthetic precursor of the oleic acid-derived PPAR-alpha activator, oleoylethanolamide. Because PPAR-alpha regulates fatty acid β-oxidation, we hypothesized that this transcription factor might mediate the oxytocin effects. This was substantiated by the observation that, in contrast to its effects in wild-type mice, oxytocin infusion failed to induce weight loss and fat oxidation in PPAR-alpha-deficient animals. Altogether, these results suggest that oxytocin administration could represent a promising therapeutic approach for the treatment of human obesity and type 2 diabetes.
Monolithic Si-based technology for optical receiver circuits (2003)

Optical communications networks must be terminated by receiver circuitry capable of converting an optical circuit to an electrical one. While current III-V technology is capable of delivering high performance, it is costly and difficult to integrate with low-cost Si based technologies. In order to overcome these barriers, we are pursuing a Si-compatible technology for integrated photodetectors. Ge, monolithically integrated with Si, offers a low-cost, high-performance materials system for photodetector integration with existing Si technology. In this paper we discuss the performance requirements and figures of merit for integrated photodetectors. We then discuss the materials issues associated with the integration of Ge on Si and show that high quality Ge films can be grown directly on Si, despite the 4% lattice mismatch. By cyclic annealing after growth, the dislocation density can be reduced to 2.3x10<sup>7</sup> cm<sup>-2</sup>, and diodes fabricated on these films show a responsivity of 300 mA/W at 1300 nm without an AR coating. Finally, we discuss the integration of waveguides with photodetectors and propose an integration scheme we believe will be capable of delivering high-performance integrated photoreceivers on a Si platform.
Measurement of photon echoes by use of femtosecond Fourier-transform spectral interferometry (1997)

Using Fourier-transform spectral interferometry, we demonstrate the measurement of both amplitude and phase of photon echoes in GaAs multiple-quantum-well structures. The complete measurement of the electric field thus achieved makes possible the determination of the corresponding Wigner spectrograms.
Loss of the normal N-ras allele in a mouse thymic lymphoma induced by a chemical carcinogen. (1985)

Young mice injected with the carcinogen N-nitroso-N-methylurea develop thymic lymphomas 2-4 months later. We previously have shown that these tumors frequently contain an activated N-ras gene that can transform rodent fibroblasts in vitro. We report here the intron/exon structure of such an activated N-ras gene and the sequence of its four coding exons. A single nucleotide change is responsible for the transforming alteration, a C----A transversion in the first base of codon 61. Through the use of synthetic oligonucleotides as hybridization probes, we show that this tumor lacks the normal allele of the N-ras gene. The implications of this finding for oncogene dominance are discussed.
The impact of intragenic CpG content on gene expression (2010)

The development of vaccine components or recombinant therapeutics critically depends on sustained expression of the corresponding transgene. This study aimed to determine the contribution of intragenic CpG content to expression efficiency in transiently and stably transfected mammalian cells. Based upon a humanized version of green fluorescent protein (GFP) containing 60 CpGs within its coding sequence, a CpG-depleted variant of the GFP reporter was established by carefully modulating the codon usage. Interestingly, GFP reporter activity and detectable protein amounts in stably transfected CHO and 293 cells were significantly decreased upon CpG depletion and independent from promoter usage (CMV, EF1 alpha). The reduction in protein expression associated with CpG depletion was likewise observed for other unrelated reporter genes and was clearly reflected by a decline in mRNA copy numbers rather than translational efficiency. Moreover, decreased mRNA levels were neither due to nuclear export restrictions nor alternative splicing or mRNA instability. Rather, the intragenic CpG content influenced de novo transcriptional activity thus implying a common transcription-based mechanism of gene regulation via CpGs. Increased high CpG transcription correlated with changed nucleosomal positions in vitro albeit histone density at the two genes did not change in vivo as monitored by ChIP.
A novel acoustic design for dual frequency transducers resulting in separate bandpass for color flow mapping (CFM) (2002)

Current transducers used in medical ultrasound imaging generally use a single bandpass for both echo-amplitude imaging and color flow mapping (CFM). A novel acoustic design is presented here which provides an additional bandpass at half the frequency of the image bandpass within the same acoustic device, making it possible to improve significantly the Doppler sensitivity and range. An advanced finite element method is used to analyze the behavior of this new multilayer acoustic structure. Several devices have been realized at 500 kHz for sonar application and at 5 MHz for medical application. The transducer realized for medical application features a narrow band (21% relative bandwidth) for Doppler at 2.4 MHz and a broad band (36% relative bandwidth) for echo-amplitude imaging at 4.6 MHz. Experimental results show a good agreement with finite element computation and demonstrate the advantage of this new acoustic design over conventional transducers.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Composition and histone substrates of polycomb repressive group complexes change during cellular differentiation (2005)

Changes in the substrate specificities of factors that irreversibly modify the histone components of chromatin are expected to have a profound effect on gene expression through epigenetics. Ezh2 is a histone-lysine methyltransferase with activity dependent on its association with other components of the Polycomb Repressive Complexes 2 and 3 (PRC2/3). Ezh2 levels are increasingly elevated during prostate cancer progression. Other PRC2/3 components also are elevated in cancer cells. Overexpression of Ezh2 in tissue culture promotes formation of a previously undescribed PRC complex, PRC4, that contains the NAD+-dependent histone deacetylase SirT1 and isoform 2 of the PRC component Eed. Eed2 is expressed in cancer and undifferentiated embryonic stem (ES) cells but is undetectable in normal and differentiated ES cells. The distinct PRCs exhibit differential histone substrate specificities. These findings suggest that formation of a transformation-specific PRC complex may have a major role in resetting patterns of gene expression by regulating chromatin structure.
Chiari I Malformation: Association With Seizures and Developmental Disabilities (1997)

Chiari I malformation, a congenital abnormality in which deformed cerebellar tonsils are displaced downward through the foramen magnum, commonly presents in patients with headache or symptoms of dysfunction of the cerebellum, brain stem, and cervical spinal cord. We report 11 children with Chiari I malformation who presented with seizures and developmental delay in motor or language function with or without autistic features. To our knowledge, an association between Chiari I malformation and seizures or neurodevelopmental deficits or both has not been previously reported. We believe that Chiari I malformation should not be considered an incidental finding in these patients, but may be a marker for subtle cerebral dysgenesis. Chiari I and II malformations may constitute a complex but continuous spectrum, related to the timing and severity of a shared underlying embryologic mechanism.
Diagnosis of Transient Ischemic Attack by the Nonneurologist (1996)

The TIA concept is understood differently by neurologists and nonneurologists. GPs and emergency MDs often label minor strokes and several nonvascular transient neurological disturbances as TIAs. Until this misconception of TIA is changed, the term TIA should probably be avoided in the communication between referring physicians and neurologists. If not referred to a neurologist, one third to one half of patients labeled with a diagnosis of TIA will be inappropriately managed.
Cyclopeptide Analogs for Characterization of the Neuropeptide Y Y2-receptor (1993)

A discontinuous 17-amino acid peptide analog of neuropeptide Y (NPY), NPY 1-4-Ahx-25-36 containing 6-aminohexanoic acid instead of the residues 5 to 24, was found to bind preferentially to Y2 subtypes of NPY receptors. In order to further characterize the binding site, three different types of cyclic analogs were synthesized. Firstly lactamisation between residues 2 and 30 led to the most selective Y2-agonist, secondly lactamisation between the N-terminus and residue 31 reduced binding significantly. Thirdly, any cyclization including the C-terminus led to an inactive compound. Circular dichroism revealed different conformations for the three analogs with reduced alpha-helical content in comparison to the linear ana-log. The different conformation of the peptides has been confirmed by molecular dynamics simulations. A model for peptide-receptor interaction is suggested.
Associative Growth and Proteolysis of Streptococcus thermophilus and Lactobacillus bulgaricus in Skim Milk (1990)

Proteolytic activities of nine strains of Streptococcus thermophilus and nine strains of Lactobacillus bulgaricus cultures incubated in pasteurized reconstituted NOM at 42C as single and mixed cultures were studied. Lactobacilli were highly proteolytic (61.0 to 144.6 J.1g of tyrosine/ml of milk) and S. thermophilus were less proteolytic (2.4 to 14.8 J.1g of tyrosine/ml of milk). Mixed cultures, with the exception of one combination, liberated more tyrosine (92.6 to 419.9 J.lg/ ml) than the sum of the individual cultures. Mixed cultures also produced more acid (lower pH). Of 81 combinations of L. bulgaricus and S. thermophilus cultures, only one combination was less proteolytic (92.6 J.lg tyrosine/ml) than the corresponding L. bulgaricus strain in pure culture (125 J.lg tyrosinelml).
Production of α-1,3-Galactosyltransferase Knockout Pigs by Nuclear Transfer Cloning (2002)

The presence of galactose alpha-1,3-galactose residues on the surface of pig cells is a major obstacle to successful xenotransplantation. Here, we report the production of four live pigs in which one allele of the alpha-1,3-galactosyltransferase locus has been knocked out. These pigs were produced by nuclear transfer technology; clonal fetal fibroblast cell lines were used as nuclear donors for embryos reconstructed with enucleated pig oocytes.
Report of an International Workshop to Standardize Baseline Evaluation and Response Criteria for Primary CNS Lymphoma (2005)

Standardized guidelines for the baseline evaluation and response assessment of primary CNS lymphoma (PCNSL) are critical to ensure comparability among clinical trials for newly diagnosed patients. The relative rarity of this tumor precludes rapid completion of large-scale phase III trials and, therefore, our reliance on the results of well-designed phase II trials is critical. To formulate this recommendation, an international group of experts representing hematologic oncology, medical oncology, neuro-oncology, neurology, radiation oncology, neurosurgery, and ophthalmology met to review current standards of reporting and to formulate a consensus opinion regarding minimum baseline evaluation and common standards for assessing response to therapy. The response guidelines were based on the results of neuroimaging, corticosteroid use, ophthalmologic examination, and CSF cytology. A critical issue that requires additional study is the optimal method to assess the neurocognitive impact of therapy and address the quality of life of PCNSL survivors. We hope that these guidelines will improve communication among investigators and comparability among clinical trials in a way that will allow us to develop better therapies for patients.
Expression of histocompatibility antigens H-2K, -D, and -L is reduced in adenovirus-12-transformed mouse cells and is restored by interferon gamma. (1985)

Primary mouse cells transformed by adenovirus type 12 (Ad12) expressed negligible amounts of class I antigens H-2K, -D, and -L on the cell surface and were capable of forming tumors in syngeneic animals, whereas cells transformed by Ad5 continued to express class I antigens and were nontumorigenic. Cells from a tumor, generated by injection of Ad12-transformed mouse cells into a syngeneic mouse, also expressed low levels of H-2 antigens, indicating that this phenotype is maintained in vivo. In all Ad12-transformed cells, synthesis of the H-2 heavy chain was not detected whereas the beta 2-microglobulin light chain was synthesized. Furthermore, the level of cytoplasmic H-2 mRNA in the Ad12 lines was greatly reduced. Reduction of H-2 expression is instructed solely by the transforming region of the viral genome, since this repression occurred in cells transformed by a DNA fragment containing only Ad12 E1A and E1B genes. Addition of recombinant murine interferon gamma strongly stimulated expression of class I antigens in the Ad12 transformants as well as in cells from the Ad12 tumor. This result indicates that Ad12 does not preferentially transform cells that are deficient for class I genes and that Ad12 does not mutate the class I genes in cells it transforms. The correlation between tumorigenicity and loss of H-2 expression in Ad12-transformed cells is discussed.
Pros and cons of letting in UV-B (2001)

Effect van UV-straling op de lengte van het gewas (potchrysant) en bloemkleur (pelargonium) en onderzoek naar transmissie van UV-stralen bij verschillende dakdekmaterialen (folie en glas met en zonder UV)
Constant denaturant capillary electrophoresis (CDCE): a high resolution approach to mutational anaylsis (1994)

Using a zone of constant temperature and denaturant concentration in capillary electrophoresis, we have devised a simple, rapid, and reproducible system for separating mutant from wild type DNA sequences with high resolution. Important to the success of this method, which we call Constant Denaturant Capillary Electrophoresis (CDCE), has been the use of linear polyacrylamide at viscosity levels that permit facile replacement of the matrix after each run. For a typical 100 bp fragment, point mutation-containing heteroduplexes are separated from wild type homoduplexes in less than 30 minutes. Using laser-induced fluorescence to detect fluorescent-tagged DNA, the system has an absolute limit of detection of 3 x 10(4) molecules with a linear dynamic range of six orders of magnitude. The relative limit of detection at present is 3 x 10(-4), i.e. 10(5) mutant sequences are recognized among 3 x 10(8) wild type sequences. The new approach should be applicable to the identification of low frequency mutations, to mutational spectrometry and to genetic screening of pooled samples for detection of rare variants.
Salutary clinical response of prostate cancer to antiandrogen withdrawal: assessment of flutamide in an in vitro paradigm predictive of tumor growth enhancement. (1997)

Salutary clinical responses to withdrawal of flutamide have been widely reported, indicating the potential of this arylalkylamine antiandrogen to stimulate the growth of prostate cancer. Flutamide is known to inhibit cytochrome P450-mediated testosterone synthesis and metabolism. Our laboratory has shown that arylalkylamine potencies in three in vitro assays of P450 binding or function correspond to a propensity of the drugs to enhance tumor growth in vivo. Accordingly, we measured inhibition by flutamide of (a) histamine binding to cytochrome P450 in rat liver microsomes, as determined spectrally, (b) P450-mediated demethylation of aminopyrine, and (c) DNA synthesis in mouse spleen cells stimulated by concanavalin A, and we compared its potencies in these assays with those of other arylalkylamine pharmaceuticals. Flutamide inhibited histamine binding to P450 (Ki = 31 +/- 7 microM), aminopyrine demethylation (Ki = 39 +/- 2 microM), and mitogenesis (IC50 = 12 +/- 1 microM). In overall potency, it ranked with a group of eight drugs, including the antiestrogen tamoxifen, all linked with enhanced tumor growth. In the context of clinical observations that some patients with prostate cancer benefit from flutamide withdrawal, our findings underline concerns that many arylalkylamine drugs have the potential to stimulate the growth or development of malignancies, including prostate cancer. Tumor growth enhancement by flutamide and other arylalkylamines may result from drug perturbation and/or induction of histamine-binding P450 enzymes involved in the synthesis of steroid and eicosanoid mediators that regulate gene function and cell growth.
Capillary Electrophoresis in Analytical Biotechnology (1997)

"Capillary Electrophoresis in Analytical Biotechnology." Journal of Liquid Chromatography & Related Technologies, 20(11), p. 1811
Preclinical safety evaluation of intravenously administered mixed micelles. (1984)

Mixed micelles, with their main constituents lecithin and glycocholic acid, form a new principle for the parenteral administration of compounds which are poorly water-soluble. Their composition of mainly physiological substances as well as their comparatively good stability substantiate their attractivity in comparison to existing solvents. A decomposition due to physical influences such as heat or storage for several years will almost exclusively affect the lecithin component in the form of hydrolysis into free fatty acids and lysolecithin. Their toxicity was examined experimentally in various studies using both undecomposed and artificially decomposed mixed micelles. In these studies the mixed micelles were locally and systemically well tolerated and proved to be neither embryotoxic, teratogenic nor mutagenic. Only when comparatively high doses of the undecomposed mixed micelles were administered, corresponding to approximately 30 to 50 times the anticipated clinical injection volume (of e.g. diazepam mixed micelles), did some vomitus (dogs), slight liver enzyme elevation (rats and dogs), and slightly increased liver weights (dogs) occur. After repeated injections of the artificially decomposed formulation (approximately 25% of lecithin hydrolyzed to free fatty acids and lysolecithin) effects such as intravascular haemolysis, liver enzyme elevations and intrahepatic cholestasis (dogs only) were observed but only when doses exceeding a threshold of approximately 40 to 60 mg lysolecithin/kg body weight were administered. All alterations were reversible after cessation of treatment.
Finger tracking for interaction in augmented environments (2002)

Optical tracking systems allow three-dimensional input for virtual environment applications with high precision and without annoying cables. Spontaneous and intuitive interaction is possible through gestures. The authors present a finger tracker that allows gestural interaction and is simple, cheap, fast, robust against occlusion and accurate. It is based on a marked glove, a stereoscopic tracking system and a kinematic 3D model of the human finger. Within our augmented reality application scenario, the user is able to grab, translate, rotate, and release objects in an intuitive way. We demonstrate our tracking system in an augmented reality chess game, allowing a user to interact with virtual objects.