gebhart/patrepeval huggingface dataset:
Interaction of Molecular Oxygen with the Vacuum-Annealed TiO2(110) Surface:  Molecular and Dissociative Channels (1999)

We have examined the interaction of molecular oxygen with the TiO2(110) surface using temperature-programmed desorption (TPD), isotopic labeling studies, sticking probability measurements, and electron energy loss spectroscopy (ELS). Molecular oxygen does not adsorb on the TiO2(110) surface in the temperature range between 100 and 300 K unless surface oxygen vacancy sites are present. These vacancy defects are generated by annealing the crystal at 850 K, and can be quantified reliably using water TPD. Adsorption of O2 at 120 K on a TiO2(110) surface with 8% oxygen vacancies (about 4 × 1013 sites/cm2) occurs with an initial sticking probability of 0.5−0.6 that diminishes as the surface is saturated. The saturation coverage at 120 K, as estimated by TPD uptake measurements, is approximately three times the surface vacancy population. Coverage-dependent TPD shows little or no O2 desorption below a coverage of 4 × 1013 molecules/cm2 (the vacancy population), presumably due to dissociative filling of the vacancy sites in a 1:1 ratio. Above a coverage of 4 × 1013 molecules/cm2, a first-order O2 TPD peak appears at 410 K. Oxygen molecules in this peak do not scramble oxygen atoms with either the surface or with other coadsorbed oxygen molecules. Sequential exposures of 16O2 and 18O2 at 120 K indicate that each adsorbed O2 molecule, irrespective of its adsorption sequence, has equivalent probabilities with respect to its neighbors to follow the two channels (molecular and dissociative), suggesting that O2 adsorption is not only precursor-mediated, as the sticking probability measurements indicate, but that all O2 molecules reside in this precursor state at 120 K. This precursor state may be associated with a weak 145 K O2 TPD state observed at high O2 exposures. ELS measurements suggest charge transfer from the surface to the O2 molecule based on disappearance of the vacancy loss feature at 0.8 eV, and the appearance of a 2.8 eV loss that can be assigned to an adsorbed O2- species based on comparisons with Ti−O2 inorganic complexes in the literature. Utilizing results from recent spin-polarized DFT calculations in the literature, we propose a model where three O2 molecules are bound in the vicinity of each vacancy site at 120 K. For adsorption temperatures above 150 K, the dissociation channel completely dominates and the surface adsorbs oxygen in a 1:1 ratio with each vacancy site. ELS measurements indicate that the vacancies are filled, and the remaining oxygen adatom, which is apparent in TPD, is transparent in ELS. On the basis of the variety of oxygen adsorption states observed in this study, further work is needed in order to determine which oxygen-related species play important roles in chemical and photochemical oxidation processes on TiO2 surfaces.
Targeting the hepcidin–ferroportin axis to develop new treatment strategies for anemia of chronic disease and anemia of inflammation (2011)

Anemia of chronic disease (ACD) or anemia of inflammation is prevalent in patients with chronic infection, autoimmune disease, cancer, and chronic kidney disease. ACD is associated with poor prognosis and lower quality of life. Management of ACD using intravenous iron and erythropoiesis stimulating agents are ineffective for some patients and are not without adverse effects, driving the need for new alternative therapies. Recent advances in our understanding of the molecular mechanisms of iron regulation reveal that increased hepcidin, the iron regulatory hormone, is a key factor in the development of ACD. In this review, we will summarize the role of hepcidin in iron homeostasis, its contribution to the pathophysiology of ACD, and novel strategies that modulate hepcidin and its target ferroportin for the treatment of ACD.
Are crossbars really dead? (1995)

Crossbar switches are rarely considered for large, scalable multiprocessor interconnect systems because they require O(n2) switching elements, are difficult to control efficiently and are hard to implement once their size becomes too large to fit on one integrated circuit. However these problems are technology dependent and a recent innovation in fiber optic devices has led to a new implementation of crossbar switches that does not share these problems while retaining the full advantages of a crossbar switch: low latency, high throughput, complete connectivity and multi-cast capability. Moreover, this new technology has several characteristics that allow a distributed control system which scales linearly in the number of attached nodes.The innovation that led to this research is an optical and-gate that can be used to demultiplex multiple high speed data streams that are carried on one common optical medium. Optical time domain multiplexing can combine the data from many nodes and broadcast the result back to all nodes. This paper discusses OTDM technology only to the extent necessary to understand its characteristics and capabilities. The main contribution lies in the description and analysis of interconnect architectures that utilize OTDM to achieve a level performance that is beyond electronic means. It is expected that cost-reduced OTDM systems will become competitive with the next generation of interconnect systems.
Ergonomics of exoskeletons: Objective performance metrics (2009)

In this paper it is shown how variation of the kinematic structure of an exoskeleton and variation of its fixation strength on the human limb influences objective task performance metrics, such as interface load, tracking error and voluntary range of motion in a signal tracking experiment.
Sleepers, wake! Ten years on (1993)

Abstract The industrialised world has changed enormously over the past 10 years, with rising unemployment a significant feature. Work is central to living, however, and we must create new job oppurtunities for the 21st Century. The challenge for Australia, now a “post‐industrial society”, is to create more service and information‐oriented jobs, especially since other nations are doing so. In the early 1950s Australia had one of the world's highest living standards with a handsome trade surplus, but now we have slipped. The blue collar labor force is in serious decline and we must protect the under‐educated so they are not swamped by technological change. Australia has been making a paradigm shift from the Lucky country to the Clever country ‐ although Intelligent country would be more appropriate. The most difficult changes needed in work patterns will be basically conceptual and cannot be enacted through legislation.
The Use of Beneficial Microbial Endophytes for Plant Biomass and Stress Tolerance Improvement (2009)

Endophytes are microorganisms that live within host plants for at least part of their life and do not cause apparent symptoms of diseases. In general, beneficial endophytes promote host plant growth, increase plant nutrient uptake, inhibit plant pathogen growth, reduce disease severity, and enhance tolerance to environmental stresses. As sustainable and renewable agricultural production (including current biofuel and bioenergy crops) increases in prominence, endophytic microorganisms will play important roles and offer environmentally-friendly methods to increase productivity while reducing chemical inputs. This review discusses various aspects of beneficial fungal and bacterial endophyte interactions with plants, including the physiological and molecular mechanisms by which they benefit plant performance. We also discuss the potential for genetic modification of endophytes with useful genes, which could be used to impart additional traits following inoculation with the genetically engineered endophytes. Finally, we review US-issued patents over the past decade which relate to the use of fungal and bacterial endophytes for plant growth and stress tolerance improvement.
Delivery of Resveratrol, a Red Wine Polyphenol, from Solutions and Hydrogels <i>via</i> the Skin (2008)

Resveratrol, the main active polyphenol in red wine, has been demonstrated to show benefits against skin disorders. The bioavailability of orally administered resveratrol is insufficient to permit high enough drug concentrations for systemic therapy. In this study, we examined the feasibility of the topical/transdermal delivery of resveratrol. The effects of vehicles on the in vitro permeation and skin deposition from saturated solutions such as aqueous buffers and soybean oil were investigated. The general trend for the delivery from solutions was: pH 6 buffer=pH 8 buffer>10% glycerol formal in pH 6 buffer>pH 9.9 buffer>pH 10.8 buffer>soybean oil. A linear relationship was established between the permeability coefficient (K(p)) and drug accumulation in the skin reservoir. Viable epidermis/dermis served as the predominant barrier for non-ionic resveratrol permeation. On the other hand, both the stratum corneum (SC) and viable skin acted as barriers to anionic resveratrol. Several prototype hydrogel systems were also studied as resveratrol vehicles. The viscosity but not the polarity of the hydrogels controlled resveratrol permeation/deposition. Piceatannol, a derivative of resveratrol with high pharmacological activity, showed 11.6-fold lower skin permeation compared to resveratrol. The safety profiles of resveratrol suggested that the hydrogel caused no SC disruption or skin erythema. It was concluded that delivery via a skin route may be a potent way to achieve the therapeutic effects of resveratrol. This is the first report to establish the permeation profiles for topically applied resveratrol.
Quantifying surface water–groundwater interactions using time series analysis of streambed thermal records: Method development (2006)

We present a method for determining streambed seepage rates using time series thermal data. The new method is based on quantifying changes in phase and amplitude of temperature variations between pairs of subsurface sensors. For a reasonable range of streambed thermal properties and sensor spacings the time series method should allow reliable estimation of seepage rates for a range of at least ±10 m d −1 (±1.2 × 10 −2 m s −1 ), with amplitude variations being most sensitive at low flow rates and phase variations retaining sensitivity out to much higher rates. Compared to forward modeling, the new method requires less observational data and less setup and data handling and is faster, particularly when interpreting many long data sets. The time series method is insensitive to streambed scour and sedimentation, which allows for application under a wide range of flow conditions and allows time series estimation of variable streambed hydraulic conductivity. This new approach should facilitate wider use of thermal methods and improve understanding of the complex spatial and temporal dynamics of surface water–groundwater interactions.
Evidence ofBorreliaAutoimmunity-Induced Component of Lyme Carditis and Arthritis (2005)

We investigated the possibility that manifestations of Lyme disease in certain hosts, such as arthritis and carditis, may be autoimmunity mediated due to molecular mimicry between the bacterium Borrelia burgdorferi and self-components. We first compared amino acid sequences of Streptococcus pyogenes M protein, a known inducer of antibodies that are cross-reactive with myosin, and B. burgdorferi and found significant homologies with OspA protein. We found that S. pyogenes M5-specific antibodies and sera from B. burgdorferi-infected mice reacted with both myosin and B. burgdorferi proteins by Western blots and enzyme-linked immunosorbent assay. To investigate the relationship between self-reactivity and the response to B. burgdorferi, NZB mice, models of autoimmunity, were infected. NZB mice infected with B. burgdorferi developed higher degrees of joint swelling and higher anti-B. burgdorferi immunoglobulin M cross-reactive responses than other strains with identical major histocompatibility complex (DBA/2 and BALB/c). These studies reveal immunological cross-reactivity and suggest that B. burgdorferi may share common epitopes which mimic self-proteins. These implications could be important for certain autoimmunity-susceptible individuals or animals who become infected with B. burgdorferi.
ChemInform Abstract: 100 Years of Baeyer—Villiger Oxidations (1999)

Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a “Full Text” option. The original article is trackable via the “References” option.
Additive and nonadditive surface tension components and the interpretation of contact angles (1988)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTAdditive and nonadditive surface tension components and the interpretation of contact anglesC. J. Van Oss, R. J. Good, and M. K. ChaudhuryCite this: Langmuir 1988, 4, 4, 884–891Publication Date (Print):July 1, 1988Publication History Published online1 May 2002Published inissue 1 July 1988https://pubs.acs.org/doi/10.1021/la00082a018https://doi.org/10.1021/la00082a018research-articleACS PublicationsRequest reuse permissionsArticle Views6139Altmetric-Citations1158LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Alternatively spliced mRNA encodes a secreted form of human CD8 alpha. Characterization of the human CD8 alpha gene. (1989)

We have determined the organization and nucleotide sequence of the gene encoding the human T cell surface glycoprotein CD8 alpha. This gene spans approximately 8 kb and is organized into six exons which encode separate functional domains of the protein. Exon 1 encodes the 5' untranslated region and leader peptide, exon II the Ig V-like region, exon III the hinge-like region, exon IV the transmembrane domain, and exons V and VI the cytoplasmic tail. Alternative splicing that excludes nucleotide sequences from exon IV results in a transcript which encodes a secreted form of the protein. This transcript accounts for approximately 15% of the total CD8 alpha mRNA in human T cell leukemia lines and in normal human tissues. Secreted CD8 alpha protein can be detected in culture supernatants of T cell leukemia lines and PHA-stimulated PBMC by immunoprecipitation with the anti-CD8 alpha mAb OKT8 or with a polyclonal rabbit antiserum specific for the 28 amino acid cytoplasmic domain of CD8 alpha. The secreted CD8 alpha protein forms homodimers; when analyzed by SDS-PAGE, the protein migrates with an apparent molecular mass of 27 or 54 kDa under reducing or non-reducing conditions, respectively. Human secreted CD8 alpha may serve an immunoregulatory role for the interactions of T cells with their targets in vivo.
Enhancement of Immunoassay’s Fluorescence and Detection Sensitivity Using Three-Dimensional Plasmonic Nano-Antenna-Dots Array (2012)

Protein detection is universal and vital in biological study and medical diagnosis (e.g., cancer detection). Fluorescent immunoassay is one of the most widely used and most sensitive methods in protein detection (Giljohann, D. A.; Mirkin, C. A. Nature2009, 462, 461-464; Yager, P.; et al. Nature2006, 442, 412-418). Improvements of such assays have many significant implications. Here, we report the use of a new plasmonic structure and a molecular spacer to enhance the average fluorescence of an immunoassay of Protein A and human immunoglobulin G (IgG) by over 7400-fold and the immunoassay's detection sensitivity by 3,000,000-fold (the limit of detection is reduced from 0.9 × 10(-9) to 0.3 × 10(-15) molar (i.e., from 0.9 nM to 300 aM), compared to identical assays performed on glass plates). Furthermore, the average fluorescence enhancement has a dynamic range of 8 orders of magnitude and is uniform over the entire large sample area with a spatial variation ±9%. Additionally, we observed that, when a single molecule fluorophore is placed at a "hot spot" of the plasmonic structure, its fluorescence is enhanced by 4 × 10(6)-fold, thus indicating the potential to further significantly increase the average fluorescence enhancement and the detection sensitivity. Together with good spatial uniformity, wide dynamic range, and ease to manufacture, the giant enhancement in immunoassay's fluorescence and detection sensitivity (orders of magnitude higher than previously reported) should open up broad applications in biology study, medical diagnosis, and others.
Expression of the P2Y6 purinergic receptor in human T cells infiltrating inflammatory bowel disease. (1998)

The human P2Y6 receptor is a member of the G-protein-coupled P2Y purinergic receptor family that responds to extracellular uridine diphosphate (UDP). In previous work, we cloned the human P2Y6 receptor from an activated T-cell library, and others have shown that it is expressed as a 1.9-kb transcript in several lymphoid tissues. This suggests a role for P2Y6 in T-cell function. However, the precise cellular expression pattern and regulation of P2Y6 in immune cells have not yet been established. In this study, we have examined the expression of P2Y6 in a range of tissues containing leukocytes by a combination of in situ hybridization (ISH), Northern blot analysis, and RT-PCR. Northern hybridization revealed that activated peripheral T cells show increased levels of P2Y6 mRNA. Furthermore, RT-PCR analysis of CD4+ and CD8+ subsets illustrated strong expression in both activated CD4+ and CD8+ T cells. Stimulation of resting and activated T cells with the P2Y6 ligand UDP caused a rise in the intracellular free calcium concentration in only the activated subset, indicating the presence of functional receptor. By ISH, P2Y6 expression was detected in the T cells of the thymic medulla and spleen, whereas no signal was detected in the bone marrow, fetal liver, or lymph nodes. T cells are thought to play an important role in the pathogenesis of inflammatory bowel disease (IBD), and because a recent finding has suggested a role for extracellular nucleotides in mediating colonic epithelial cell damage in IBD, we speculated that the P2Y6 nucleotide receptor may be expressed in the T cells infiltrating IBD. ISH results reveal that P2Y6 is highly expressed in the T cells infiltrating active IBD, whereas P2Y6 expression was absent from the T cells of unaffected bowel. These results demonstrate expression and regulation of P2Y6 expression in T cells, and suggest a role for P2Y6 in the pathogenesis of IBD-mediated intestinal damage.
A Protein Sequenator (1967)

The protein sequenator is an instrument for the automatic determination of amino acid sequences in proteins and peptides. It operates on the principle of the phenylisothiocyanate degradation scheme. The automated process embraces the formation of the phenylthiocarbamyl derivative of the protein and the splitting off of the N‐terminal amino acid as thiazolinone. The degradation proceeds at a rate of 15.4 cycles in 24 hours and with a yield in the individual cycle in excess of 98%. The material requirements are approximately 0.25 μmoles of protein. The thiazolinones are converted to the corresponding phenylthiohydantoins in a separate operation, and the latter identified by thin layer chromatography. The process has been applied to the whole molecule of apomyoglobin from the humpback whale, and it has been possible to establish the sequence of the first 60 amino acids from the N‐terminal end.
Breath Analysis as a Potential and Non-Invasive Frontier in Disease Diagnosis: An Overview (2015)

Currently, a small number of diseases, particularly cardiovascular (CVDs), oncologic (ODs), neurodegenerative (NDDs), chronic respiratory diseases, as well as diabetes, form a severe burden to most of the countries worldwide. Hence, there is an urgent need for development of efficient diagnostic tools, particularly those enabling reliable detection of diseases, at their early stages, preferably using non-invasive approaches. Breath analysis is a non-invasive approach relying only on the characterisation of volatile composition of the exhaled breath (EB) that in turn reflects the volatile composition of the bloodstream and airways and therefore the status and condition of the whole organism metabolism. Advanced sampling procedures (solid-phase and needle traps microextraction) coupled with modern analytical technologies (proton transfer reaction mass spectrometry, selected ion flow tube mass spectrometry, ion mobility spectrometry, e-noses, etc.) allow the characterisation of EB composition to an unprecedented level. However, a key challenge in EB analysis is the proper statistical analysis and interpretation of the large and heterogeneous datasets obtained from EB research. There is no standard statistical framework/protocol yet available in literature that can be used for EB data analysis towards discovery of biomarkers for use in a typical clinical setup. Nevertheless, EB analysis has immense potential towards development of biomarkers for the early disease diagnosis of diseases.
The construction and use of bacterial DNA microarrays based on an optimized two-stage PCR strategy (2003)

The technique detailed here minimizes the cost and effort to replicate a PCR-generated DNA gene fragment library and facilitates several downstream processes (e.g. directional cloning of fragments and gene expression as affinity-tagged fusion proteins) beyond the primary objective of producing DNA microarrays for global gene expression profiling.
Solid Acid Catalysts for Biodiesel Production –‐Towards Sustainable Energy (2006)

Abstract The advantages of biodiesel as an alternative fuel and the problems involved in its manufacturing are outlined. The pros and cons of making biodiesel via fatty acid esterification using solid acid catalysts are examined. The main problem is finding a suitable catalyst that is active, selective, and stable under the process conditions. Various solid acids (zeolites, ion‐exchange resins, and mixed metal oxides) are screened as catalysts in the esterification of dodecanoic acid with 2‐ethylhexanol, 1‐propanol, and methanol at 130–180 °C. The most promising candidate is found to be sulphated zirconia. The catalyst's stability towards thermal decomposition and leaching is tested and the effects of the surface composition and structure on the catalytic activity are discussed.