gebhart/patrepeval huggingface dataset:
A novel validated enzyme-linked immunosorbent assay to quantify soluble hemojuvelin in mouse serum (2012)

Hemojuvelin is a critical regulator of hepcidin expression and can be cleaved by proteases to form soluble hemojuvelin. Soluble hemojuvelin has been recently identified in human serum but the presence and quantity of soluble hemojuvelin in mouse serum is unknown. We developed a two-site enzyme-linked immunosorbent assay using a monoclonal anti-hemojuvelin as the capture antibody and a biotinylated polyclonal anti-hemojuvelin as the detection antibody to quantify the levels of soluble hemojuvelin in mouse serum. We validated this assay using cell-conditioned media and serum from Hemojuvelin-null and Bone morphogenetic protein 6-null mice. We also used this validated assay to measure serum soluble hemojuvelin concentrations in mice receiving an acute low iron or high iron treatment. This two-site enzyme-linked immunosorbent assay was highly specific for mouse hemojuvelin, with a lower limit of detection at 13.2-26.8 ng/mL of soluble hemojuvelin in mouse serum. The median serum soluble hemojuvelin concentration in wild-type C57BL/6J mice was 57.9 ± 22 ng/mL, which is 4- to 20-fold less than that reported in healthy human volunteers. After acute low iron diet treatment in these mice, serum soluble hemojuvelin levels were increased and correlated with lowered serum iron levels and decreased hepatic hepcidin expression. An acute high iron diet in wild-type mice or chronically iron-overloaded Bone morphogenetic protein 6-null mice did not significantly lower serum soluble hemojuvelin concentrations. Here we report reliable quantitation of mouse serum soluble hemojuvelin using a novel and validated enzyme-linked immunosorbent assay. This assay may provide a useful tool to elucidate the source and physiological role of serum soluble hemojuvelin in hepcidin regulation and iron metabolism using well-established mouse models of iron-related disorders.
Effect of Testosterone on Plaque Development and Androgen Receptor Expression in the Arterial Vessel Wall (2001)

-The beneficial effects of testosterone on postinjury plaque development underlines, at least in males, the important role of androgens in the vascular system. As our data suggest, the vascular androgen receptor is probably involved in these processes. Further studies are required to characterize the androgen receptor-dependent pathways in the vascular system.
[Phytoestrogens]. (2000)

Epidemiological studies revealed that foodstuffs, in particular, soy foods containing isoflavonoid phytoestrogens may reduce the risk of some hormone-dependent disease such as not only postmenopausal symptoms but also certain(breast, prostate and colon) cancers and cardiovascular disease. This review introduces the metabolism of soybean isoflavonoids by human intestinal bacteria and the binding and gene-expression activity of the metabolites towards the human estrogen receptor(hER) alpha and beta. The dietary isoflavones(daidzin and genistin) in soybean were metabolized to equol and dihydrogenistein via daidzein and genistein, respectively. The metabolites bind more strongly to hER beta than hER alpha. The binding affinity of genistein is comparable that of 17 beta-estradiol. Equol induces transcription most strongly both with hER beta and hER alpha.
Vaccinia Virus Encodes a Family of Genes with Homology to Serine Proteinase Inhibitors (1989)

Nucleotide sequencing of a region of the vaccinia virus genome proximal to the right inverted terminal repeat (ITR) identified two open reading frames (ORFs) encoding proteins of 39K and 40K with amino acid homology to each other, to another vaccinia virus gene near the opposite end of the virus genome and to the superfamily of serine proteinase inhibitors (serpins). Serpins have now been found in poxviruses from the genera orthopox (cowpox and vaccinia viruses), leporipox (myxoma virus) and avipox (fowlpox virus). One of the vaccinia virus serpins identified here (B13R) shares 92% amino acid identity with the serpin from cowpox virus and 46% and 19% identity with vaccinia serpins B24R and K2L, respectively. The amino acid sequence of B13R reported here differs at 11 positions from a recently reported sequence and contains an additional three internal residues. The serpin genes near the right ITR are separated by 8 kb of DNA. Both genes contain early transcriptional termination signals just downstream of the ORFs and are transcribed in a rightward direction towards the end of the genome. Analysis of mRNAs from virus-infected cells demonstrated that all three vaccinia virus serpin genes are transcribed early during infection. The amino acid sequences at the active sites of these serpins suggest that they may inhibit serine proteinases of differing biochemical specificities. The possible functions of these genes are discussed.
INACTIVATION KINETICS AND REDUCTION OF BACILLUS COAGULANS SPORE BY THE COMBINATION OF HIGH PRESSURE AND MODERATE HEAT (2008)

ABSTRACT The combination effect of high pressure (400, 500 and 600 MPa) and moderate heat (70 and 80C) on the inactivation kinetics and reduction of Bacillus coagulans spore in phosphate buffer and ultra‐high temperature (UHT) whole milk was investigated. The pressure come‐up time and corresponding logarithmic reduction of spore inactivation were considered during pressure‐thermal treatment. B. coagulans spore had a much higher resistance to pressure in UHT whole milk than in phosphate buffer. Survival data were modeled using the linear, Weibull and log‐logistic models to obtain relevant kinetic parameters. The tailing phenomenon occurred in all survival curves, indicating the linear model was not adequate for describing these curves. The mean square error and regression coefficient suggested that the log‐logistic model produced best fits to all survival curves, followed by the Weibull model. PRACTICAL APPLICATIONS It becomes increasingly apparent that high‐pressure treatment combined with moderate heat treatment for low acid and acid products is often required for effective bacterial spores' inactivation. Consequently, the prediction model of microbial survival curves is essential. Bacillus coagulans is a slightly pressure‐resistant and relatively heat‐resistant spoilage bacterium of considerable concern during the processing of acid foods. Spore inactivation effect during the pressure come‐up time is sometimes considerable and should not beignored. The use of mathematical models to predict inactivation for spores could help the food industry further to develop optimum process conditions.
Differential Induction of the Toll-Like Receptor 4-MyD88-Dependent and -Independent Signaling Pathways by Endotoxins (2005)

The biological response to endotoxin mediated through the Toll-like receptor 4 (TLR4)-MD-2 receptor complex is directly related to lipid A structure or configuration. Endotoxin structure may also influence activation of the MyD88-dependent and -independent signaling pathways of TLR4. To address this possibility, human macrophage-like cell lines (THP-1, U937, and MM6) or murine macrophage RAW 264.7 cells were stimulated with picomolar concentrations of highly purified endotoxins. Harvested supernatants from previously stimulated cells were also used to stimulate RAW 264.7 or 23ScCr (TLR4-deficient) macrophages (i.e., indirect induction). Neisseria meningitidis lipooligosaccharide (LOS) was a potent direct inducer of the MyD88-dependent pathway molecules tumor necrosis factor alpha (TNF-alpha), interleukin-1beta (IL-1beta), monocyte chemoattractant protein 1 (MCP-1), macrophage inflammatory protein 3alpha (MIP-3alpha), and the MyD88-independent molecules beta interferon (IFN-beta), nitric oxide, and IFN-gamma-inducible protein 10 (IP-10). Escherichia coli 55:B5 and Vibrio cholerae lipopolysaccharides (LPSs) at the same pmole/ml lipid A concentrations induced comparable levels of TNF-alpha, IL-1beta, and MIP-3alpha, but significantly less IFN-beta, nitric oxide, and IP-10. In contrast, LPS from Salmonella enterica serovars Minnesota and Typhimurium induced amounts of IFN-beta, nitric oxide, and IP-10 similar to meningococcal LOS but much less TNF-alpha and MIP-3alpha in time course and dose-response experiments. No MyD88-dependent or -independent response to endotoxin was seen in TLR4-deficient cell lines (C3H/HeJ and 23ScCr) and response was restored in TLR4-MD-2-transfected human embryonic kidney 293 cells. Blocking the MyD88-dependent pathway by DNMyD88 resulted in significant reduction of TNF-alpha release but did not influence nitric oxide release. IFN-beta polyclonal antibody and IFN-alpha/beta receptor 1 antibody significantly reduced nitric oxide release. N. meningitidis endotoxin was a potent agonist of both the MyD88-dependent and -independent signaling pathways of the TLR4 receptor complex of human macrophages. E. coli 55:B5 and Vibrio cholerae LPS, at the same picomolar lipid A concentrations, selectively induced the MyD88-dependent pathway, while Salmonella LPS activated the MyD88-independent pathway.
Development of position-independent expression vectors and their transfer into transgenic fish. (1995)

Many genes have been transferred into fish for scientific and aquacultural purposes. We have been developing expression vectors containing regulatory sequences from the carp beta-actin gene enhancer/promoter for expression of genes or cDNAs in transgenic fish. Expression from these vectors varies over a 20-fold range in zebrafish, beginning within 12 hours of fertilization and continuing for at least two weeks. Expression can be found in nearly all tissues. The vectors have the following characteristics: (1) they contain either unique or polycloning restriction endonuclease sites for insertion of any gene or cDNA, and (2) the piscine sequences are flanked by restriction sites for easy removal of plasmid, or nonfish, sequences. We have tested the ability of special sequences, border elements, from other animals to confer position-independent expression of transgenes or enhance integration of transgenic constructs into fish chromosomes. Early results indicate that these elements do not act as enhancers and do not improve integration frequencies. However, both avian and insect border elements are able to confer position-independent expression as judged from expression of CAT genes in F1 generation fish.
The role of relaxin in the development of the uteroplacental circulation in early pregnancy. (1994)

These data suggest that relaxin, E2, and progesterone may influence the changes in uterine blood flow that occur in early pregnancy. The role played by E2 and progesterone in the development of the uteroplacental circulation may be modulated by relaxin, constituting a novel function for this ovarian peptide.
A Silicon-based MEMS Vibrating Mesh Nebulizer for Inhaled Drug Delivery (2016)

This paper presents a silicon-based MEMS vibrating mesh nebulizer capable of producing micro droplets for inhaled drug delivery. The device concept, design, fabrication, and measurements are presented. The core element of the nebulizer (vibrating mesh) was fabricated using silicon process and consists of 1000 tapered micro-sized apertures. During operation the mesh vibrates at high frequency with the bending profile corresponding to the 02 resonance mode. The droplet diameter measured at the device output is 3.75 mu m and a typical output rate is 0.45 ml / min.
Invited review: the evolution of antidepressant mechanisms (2004)

Present antidepressants are all descendents of the serendipitous findings in the 1950s that the monoamine oxidase inhibitor iproniazid and the tricyclic antidepressant imipramine were effective antidepressants. The identification of their mechanism of action, and those of reserpine and amphetamine, in the 1960s, led to the monoamine theories of depression being postulated; first, with noradrenaline then 5-hydroxytryptamine being considered the more important amine. These monoamine theories of depression predominated both industrial and academic research for four decades. Recently, in attempts to design new drugs with faster onsets of action and more universal therapeutic action, downstream alterations common to current antidepressants are being examined as potential antidepressants. Additionally, the use of animal models has identified a number of novel targets some of which have been subjected to clinical trials in humans. However, monoamine antidepressants remain the best current medications and it may be some time before they are dislodged as the market leaders.
Rigid-Core Oligothiophene-S,S-dioxides with High Photoluminescence Efficiencies Both in Solution and in the Solid State (2001)

The photoluminescence (PL) frequencies and quantum efficiencies of dithieno[3,2-b;2‘,3‘-d]thiophene-4,4-dioxide (1), its 3,5-dimethyl derivative (2), and the corresponding 4-oxide (3) are reported and discussed in relation to their single-crystal X-ray structures. The peculiar packing modalities of dioxides 1 and 2, based on dimeric units originated by short S···O contacts between molecules related by an inversion center, cause an unusually high bathocromic shift of PL frequencies from solution to solid state. This effect is accompanied by a marked decrease in solid-state PL efficiencies (12% and 16%) compared to those in solution (75% and 77%). In monoxide 3 the loss of local symmetry inherent to the change SO2 → SO deeply modifies the self-assembly and PL properties, and the PL efficiency in the solid state is close to that in solution. Ab initio calculations on the ground and excited states of compound 1 were performed and compared to those of a conformationally mobile counterpart. Oligomers containing dithienothiophene 2 as internal core were synthesized and found to be characterized by high PL efficiencies in the solid-state (up to 48%) as well as in solution (up to 85%). The current−voltage and luminance−voltage plots of an electroluminescent diode fabricated with one of these new rigid-core oligothiophene-S,S-dioxides are reported.
Rat peroxisomal 3-ketoacyl-CoA thiolase gene. Occurrence of two closely related but differentially regulated genes. (1990)

We isolated and analyzed the genes for rat peroxisomal 3-ketoacyl-CoA thiolase. Two active genes (termed A and B), both likely to be coding for the peroxisomal thiolase, were identified per haploid rat genome. These genes span approximately 9 and 11 kilobases, respectively, and both contain 12 exons and 11 introns, with overall similar organizations. The nucleotide sequences are highly conserved in the coding regions and in many introns. The A and B genes code for slightly different amino acid sequences, and the known cDNA sequence (Hijikata, M., Ishii, N., Kagamiyama, H., Osumi, T., and Hashimoto, T. (1987) J. Biol. Chem. 262, 8151-8158) corresponds to the B gene product. By in vitro transcription/translation, the A gene was shown to produce a thiolase precursor having a 10-residue longer amino-terminal presequence than that of the B gene product. Primer extension analysis revealed that the A gene is constitutively expressed and is not influenced by the administration of a peroxisome proliferator, whereas the B gene is markedly activated by the same treatment. Several common sequences were noted in the 5'-flanking regions of the B gene and in the genes of two other peroxisomal beta-oxidation enzymes, induced in parallel by peroxisome proliferators.
Escherichia coli MoeA and MogA (2002)

Escherichia coli MoeA and MogA are required for molybdenum cofactor biosynthesis and are believed to function in the addition of molybdenum to the dithiolene of molybdopterin to form molybdenum cofactor. Here we show that moeA(-) and mogA(-) cells are able to synthesize molybdopterin, but both are deficient in molybdenum incorporation and, as a consequence, are deficient in the formation of molybdopterin-guanine dinucleotide. Human sulfite oxidase expressed in E. coli moeA(-) could be activated in vitro in the presence of MoeA and low concentrations of molybdate. Sulfite oxidase purified from the moeA(-) lysate was also activated, although to a lesser extent than observed in the presence of lysate. MogA was incapable of activating sulfite oxidase expressed in E. coli mogA(-). These results demonstrate that molybdenum insertion into molybdopterin is required for molybdopterin-guanine dinucleotide formation, and that MoeA facilitates molybdenum incorporation at low levels of molybdate, but MogA has an alternative function, possibly as a carrier for molybdopterin during molybdenum incorporation.
Top-gated graphene field-effect-transistors formed by decomposition of SiC (2008)

Top-gated, few-layer graphene field-effect transistors (FETs) fabricated on thermally decomposed semi-insulating 4H-SiC substrates are demonstrated. Physical vapor deposited SiO2 is used as the gate dielectric. A two-dimensional hexagonal arrangement of carbon atoms with the correct lattice vectors, observed by high-resolution scanning tunneling microscopy, confirms the formation of multiple graphene layers on top of the SiC substrates. The observation of n-type and p-type transition further verifies Dirac Fermions’ unique transport properties in graphene layers. The measured electron and hole mobilities on these fabricated graphene FETs are as high as 5400 and 4400cm2∕Vs, respectively, which are much larger than the corresponding values from conventional SiC or silicon.
Prostaglandin F2α Induces Expression of Prostaglandin G/H Synthase-2 in the Ovine Corpus Luteum: A Potential Positive Feedback Loop during Luteolysis1 (1997)

The primary role of prostaglandin (PG) F2alpha in regression of the corpus luteum has been clearly demonstrated in many mammalian species. We have used in vivo and in vitro approaches to investigate the possibility that exogenous PGF2alpha induces expression of prostaglandin G/H synthase-2 (PGHS-2; cyclooxygenase-2) and causes production of PGF2alpha in ovine luteal cells. Ewes received infusions into the ovarian artery of 1 ml PGF2alpha (1 micromol) or saline, and corpora lutea were collected at various times and analyzed for PGHS-2 mRNA using quantitative, competitive reverse transcription polymerase chain reaction. PGF2alpha dramatically increased the steady-state concentration of mRNA for PGHS-2 within 1 h, but basal concentration returned at 12 h posttreatment. In vitro studies using isolated ovine large luteal cells indicated that mRNA for PGHS-2 was induced by PGF2alpha, phorbol didecanoate, and ionomycin in a pattern similar to that observed in vivo. PGHS-2 protein was induced by all three treatments 4-12 h later, and accumulation of PGF2alpha in the culture media increased at 12 and 24 h posttreatment. In conclusion, we have provided evidence that PGF2alpha, probably acting through the protein kinase C/free intracellular calcium pathway, can stimulate large luteal cells to express PGHS-2 and produce PGF2alpha. This luteal PGF2alpha is likely to have an autocrine/paracrine function to augment the luteolytic effect of PGF2alpha of uterine origin.
Liderazgo para la mejora de la calidad en secundaria : algunos desarrollos internacionales (2006)

Monográfico con el título: 'El desafío de la calidad de la Educación Secundaria : una perspectiva comparada'. Resumen basado en el de la publicación
A new severe acute necrotizing pancreatitis model induced by l-ornithine in rats (2008)

We have developed a simple, noninvasive model of acute necrotizing pancreatitis in rats by intraperitoneal injection of 3 g/kg L-ornithine. Interestingly, we found that, compared with L-arginine, L-ornithine was even more effective at inducing pancreatitis. Large doses of L-arginine produce a toxic effect on the pancreas, at least in part, through L-ornithine.
One‐dimensional scatter‐subtraction method for brachytherapy dose calculation near bounded heterogeneities (1993)

Neglect of tissue and applicator heterogeneities in brachytherapy treatment planning is due in part to lack of accurate, general, and fast three-dimensional (3D) dose-computation algorithms. A novel dose-calculation algorithm that accounts for the lateral dimensions and location of the heterogeneity as well as its thickness has been developed. For simple 2D, water-equivalent density heterogeneities, the algorithm is shown to be applicable to a wide range of photon energies and is 500-1000 times more efficient than Monte Carlo photon-transport calculations. The model is based upon reducing the bounded 2D heterogeneity problem to two 1D problems by dividing the scattering volume into two regions: A cone-shaped region that subtends the heterogeneity with its apex at the source and the complementary cone that contributes scatter dose by diffusion around the heterogeneity. The input data consist of precalculated scatter-to-primary ratios (SPRs) for collimated isotropic point sources. The central-axis "mini-beam" problem for a slab heterogeneity is solved by a simple 1D scatter integration model that accounts for both the thickness of the heterogeneity and its location relative to the point of interest. The scatter contribution arising outside the mini-beam is modeled as the difference in SPRs corrected for transmission through the heterogeneity. The algorithm agrees, on average, with sample Monte Carlo calculations within 1% to 7% for 125I, 192Ir, and 100 keV point sources along the axes of water-equivalent cylindrical heterogeneities (rho = 0-12.6 g/cm3, 3.6, and 24 mm diameters, and dose-perturbation factors of 0.44-1.33 relative to the homogeneous case). The potential of generalizing the scatter-subtraction approach to encompass 3D heterogeneities, those consisting of high-atomic number media, and those of irregular shape, is discussed.
A High-Density Subthreshold SRAM with Data-Independent Bitline Leakage and Virtual Ground Replica Scheme (2007)

A 10T SRAM cell with data-independent bitline leakage and a virtual-ground replica scheme allows 1k cells per bitline in subthreshold SRAMs. Reverse short-channel effect is used to improve writability, offer higher speed, reduce junction capacitance, and decrease circuit variability. A 0.13mum, the 480kb SRAM test chip shows a minimum operating voltage of 0.20V.
Novel autoantigens immunogenic in COPD patients (2009)

The identification of a rather complex humoral immune response in COPD patients supports the idea of COPD as a disease with strong autoimmune features. The identification of novel immunogenic antigens is a first step towards a better understanding of the autoimmune component of COPD.
The Human Interleukin-2 Receptor (1986)

Exhausted CD8 T (Tex) cells are a distinct cell lineage that arise during chronic infections and cancers in animal models and humans. Tex cells are characterized by progressive loss of effector functions, high and sustained inhibitory receptor expression, ...Read More