gebhart/patrepeval huggingface dataset:
IERS Conventions (2010) (2010)

Abstract : This document is intended to define the standard reference systems realized by the International Earth Rotation and Reference Systems Service (IERS) and the models and procedures used for this purpose. It is a continuation of the series of documents begun with the Project MERIT (Monitor Earth Rotation and Intercompare the Techniques) Standards (Melbourne et al., 1983) and continued with the IERS Standards (McCarthy, 1989; McCarthy, 1992) and IERS Conventions (McCarthy, 1996; McCarthy and Petit, 2004). The current issue of the IERS Conventions is called the IERS Conventions (2010). The reference systems and procedures of the IERS are based on the resolutions of international scientific unions. The celestial system is based on IAU (International Astronomical Union) Resolution A4 (1991). It was officially initiated and named International Celestial Reference System (ICRS) by IAU Resolution B2 (1997) and its definition was further refined by IAU Resolution B1 (2000) and by IAU Resolution B3 (2009). The terrestrial system is based on IUGG (International Union of Geodesy and Geophysics) Resolution 2 (1991). It was officially endorsed as the International Terrestrial Reference System (ITRS) by IUGG Resolution 2 (2007). The transformation between celestial and terrestrial systems is based on IAU Resolution B1 (2000) and was complemented by IAU Resolutions B1 and B2 (2006). The definition of time coordinates and time transformations, the models for light propagation and the motion of massive bodies are based on IAU Resolution A4 (1991), further refined by IAU Resolution B1 (2000) and IAU Resolution B3 (2006). In some cases, the procedures used by the IERS, and the resulting conventional frames produced by the IERS, do not completely follow these resolutions. These cases are identified in this document and procedures to obtain results consistent with the resolutions are indicated.
Mechanisms and therapeutic effectiveness of pulsed electromagnetic field therapy in oncology (2016)

Cancer is one of the most common causes of death worldwide. Available treatments are associated with numerous side effects and only a low percentage of patients achieve complete remission. Therefore, there is a strong need for new therapeutic strategies. In this regard, pulsed electromagnetic field (PEMF) therapy presents several potential advantages including non-invasiveness, safety, lack of toxicity for non-cancerous cells, and the possibility of being combined with other available therapies. Indeed, PEMF stimulation has already been used in the context of various cancer types including skin, breast, prostate, hepatocellular, lung, ovarian, pancreatic, bladder, thyroid, and colon cancer in vitro and in vivo. At present, only limited application of PEMF in cancer has been documented in humans. In this article, we review the experimental and clinical evidence of PEMF therapy discussing future perspectives in its use in oncology.
Mutations in the ATM gene lead to impaired overall and treatment-free survival that is independent of IGVH mutation status in patients with B-CLL (2005)

The ataxia telangiectasia mutated (ATM) protein is the principal activator of the p53 protein in the response to DNA double-strand breaks. Mutations in the ATM gene have been previously found in B-cell chronic lymphocytic leukemias (B-CLLs) but their clinical significance is unknown. We analyzed 155 CLL tumors and found 12% with ATM mutations and 4% with TP53 mutations; 2 tumors contained mutations in both genes. Retrospective analysis on selected samples indicated that the ATM mutations were usually present at diagnosis. Compared with patients with wild-type ATM/TP53 genes, patients with ATM mutations had statistically significantly reduced overall and treatment-free survival. Although present in both IGVH mutation subgroups, ATM mutations were associated with unmutated IGVH genes and they provided independent prognostic information on multivariate analysis. Mutations in the ATM gene resulted in impaired in vitro DNA damage responses. Tumors with ATM mutations only partially correlated with tumors with loss of an ATM allele through an 11q deletion and, interestingly, those 11q-deleted tumors with a second wild-type ATM allele had a preserved DNA damage response. The majority of patients with ATM mutations were refractory to DNA damaging chemotherapeutic drugs and as such might benefit from therapies that bypass the ATM/p53 pathway.
Reprogramming the specificity of sortase enzymes (2014)

Significance The modification of proteins has proven to be crucial for many research and industrial applications. The bacterial transpeptidase Staphylococcus aureus sortase A (SrtA) is a powerful tool for conjugating proteins to a wide variety of molecules, but is limited to those proteins containing the five amino acid LPXTG sorting motif. Here we present a system for the directed evolution of reprogrammed SrtA variants that accept proteins with altered sorting motifs. We used this system to evolve two families of orthogonal sortases that recognize LAXTG and LPXSG motifs. These evolved sortases enabled the synthesis of triblock fluorophore–protein–PEG conjugates, the covalent and orthogonal functionalization of multiple proteins onto surfaces, and the manipulation of endogenous human proteins lacking a native LPXTG motif.
New developments in lentiviral vector design, production and purification (2013)

The principal hurdles toward the use of recombinant lentivirus as a gene therapy vector are the low titer at which it is produced as well as the difficulty to purify it at an acceptable level without degrading it. The recent advances in the bioproduction of this vector suggest these issues are about to be resolved, making the retrovirus gene therapy a mature technology.
A Novel Antibody Engineering Strategy for Making Monovalent Bispecific Heterodimeric IgG Antibodies by Electrostatic Steering Mechanism (2015)

Producing pure and well behaved bispecific antibodies (bsAbs) on a large scale for preclinical and clinical testing is a challenging task. Here, we describe a new strategy for making monovalent bispecific heterodimeric IgG antibodies in mammalian cells. We applied an electrostatic steering mechanism to engineer antibody light chain-heavy chain (LC-HC) interface residues in such a way that each LC strongly favors its cognate HC when two different HCs and two different LCs are co-expressed in the same cell to assemble a functional bispecific antibody. We produced heterodimeric IgGs from transiently and stably transfected mammalian cells. The engineered heterodimeric IgG molecules maintain the overall IgG structure with correct LC-HC pairings, bind to two different antigens with comparable affinity when compared with their parental antibodies, and retain the functionality of parental antibodies in biological assays. In addition, the bispecific heterodimeric IgG derived from anti-HER2 and anti-EGF receptor (EGFR) antibody was shown to induce a higher level of receptor internalization than the combination of two parental antibodies. Mouse xenograft BxPC-3, Panc-1, and Calu-3 human tumor models showed that the heterodimeric IgGs strongly inhibited tumor growth. The described approach can be used to generate tools from two pre-existent antibodies and explore the potential of bispecific antibodies. The asymmetrically engineered Fc variants for antibody-dependent cellular cytotoxicity enhancement could be embedded in monovalent bispecific heterodimeric IgG to make best-in-class therapeutic antibodies.
Prospects for B-cell-targeted therapy in autoimmune disease (2004)

Reasons for targeting B cells in autoimmune disease date back to the discovery of autoantibodies over 50 yr ago [1]. The idea became of practical interest when anti-B cell monoclonal antibodies were developed in the early 1990s [2, 3]. Fortuitously, at about the same time it became clear that B cells are not simply the subordinate foot soldiers of an immune response but may be as important as T cells in its genesis and regulation. Moreover, it seemed possible that B cells might actually be the driving force behind human autoimmunity. The concept of therapeutic B-lymphocyte depletion (BLyD) emerged subsequently in the pages of this journal [4]. Concept was transformed into reality with the use of the anti-CD20 (i.e. anti-B cell) monoclonal
Sputum Digestion (1966)

Sputum Digestion: I. The Mortality Rate of Tubercle Bacilli in Various Digestion Systems Get access Krasnow Irving, Ph.D., Krasnow Irving, Ph.D. Clinical Laboratory and Bacteriology Research Laboratory, Veterans Administration Hospital, San Fernando, California 91342 Search for other works by this author on: Oxford Academic Google Scholar Lawrence G. Wayne, Ph.D. Lawrence G. Wayne, Ph.D. Clinical Laboratory and Bacteriology Research Laboratory, Veterans Administration Hospital, San Fernando, California 91342 Search for other works by this author on: Oxford Academic Google Scholar American Journal of Clinical Pathology, Volume 45, Issue 3_ts, March 1966, Pages 352–355, https://doi.org/10.1093/ajcp/45.3_ts.352 Published: 01 March 1966 Article history Received: 15 October 1965 Published: 01 March 1966
Specific Triggering of the Fas Signal Transduction Pathway in Normal Human Keratinocytes (1996)

The epidermis is continually exposed to genotoxic injury and requires an efficient mechanism to eliminate genetically altered cells. The membrane receptor, Fas, initiates apoptosis in many cell types, including keratinocytes. Receptor cross-linking is the vital post-ligand binding step in Fas signal transduction, and we have utilized FK1012, capable of oligomerizing proteins engineered to contain the FK506 binding protein (FKBP), to trigger Fas via FKBP-linked receptor cytoplasmic domains in human keratinocytes. An FKBP chimera containing the Fas cytoplasmic domain targeted to the plasma membrane induced an up to 89% decrease in viability of keratinocytes, as reflected by the activity of constitutive promoters, in response to FK1012. Oligomerization of Fas, either with engineered Fas.FKBP by FK1012 or via antibody cross-linking of full-length Fas-induced cellular changes consistent with apoptosis. The lpr Fas point mutation abolished this effect. A Fas.FKBP construct unlinked to the membrane was fully active in this assay. Early developmental age or pre-treatment of cells with GM-CSF, TGF-beta, EGF, KGF, IFN-gamma, or phorbol ester failed to protect against Fas effects. These findings reveal that the Fas signal transduction pathway is active in keratinocytes, requires no induction, and dominantly overrides growth stimuli.
Photochemical Instability of CdSe Nanocrystals Coated by Hydrophilic Thiols (2001)

The photochemical instability of CdSe nanocrystals coated by hydrophilic thiols was studied nondestructively and systematically in water. The results revealed that the photochemical instability of the nanocrystals actually included three distinguishable processes, namely the photocatalytic oxidation of the thiol ligands on the surface of nanocrystals, the photooxidation of the nanocrystals, and the precipitation of the nanocrystals. At first, the thiol ligands on the surface of a nanocrystal were gradually photocatalytically oxidized using the CdSe nanocrystal core as the photocatalyst. This photocatalytic oxidation process was observed as a zero-order reaction in terms of the concentration of the free thiols in the solution. The photogenerated holes in a nanocrystal were trapped onto the thiol ligands bound on the surface of the nanocrystal, which initiated the photooxidation of the ligands and protected the nanocrystal from any photooxidation. After nearly all of the thiol ligands on the surface of the nanocrystals were converted into disulfides, the system underwent several different pathways. If the disulfides were soluble in water, then all of the disulfides fell into the solution at the end of this initial process, and the nanocrystals precipitated out of the solution without much variation over their size and size distribution. When the disulfides were insoluble in water, they likely formed a micelle-like structure around the nanocrystal core and kept it soluble in the solution. In this case, the nanocrystals only precipitated after severe oxidation, which took a long period of time. If the system contained excess free thiol ligands, they replaced the photochemically generated disulfides and maintained the stability and solubility of the nanocrystals. The initiation stage of the photooxidation of CdSe nanocrystals themselves increased as the thickness and packing density of the ligand shell increased. This was explained by considering the ligand shell on the surface of a nanocrystal as the diffusion barrier of the oxygen species from the bulk solution into the interface between the nanocrystal and the surface ligands. Experimental results clearly indicated that the initiation stage of the photooxidation was not caused by the chemical oxidation of the system kept in air under dark conditions or the hydrolysis of the cadmium-thiol bonds on the surface of the nanocrystals, both of which were magnitudes slower than the photocatalytic oxidation of the surface ligands if they occurred at all. The results described in this contribution have already been applied for designing new types of thiol ligands which dramatically improved the photochemical stability of CdSe nanocrystals with a ligand shell that is as thin as approximately 1 nm.
Attenuation of autoimmune disease and lymphocyte accumulation in MRL/lpr mice by treatment with anti‐Vβ8 antibodies (1992)

MRL-MP-lpr/lpr mice are afflicted by a severe systemic autoimmune disease that is aggravated by the lpr mutation resulting in the accumulation of phenotypically abnormal lpr cells (CD3+CD4-CD8-) in all lymphoid issues including hyperplastic lymph nodes. Given that products of the T cell receptor V beta 8 gene family are overrepresented among lpr cells, different schedules aimed at selectively decreasing the frequency of lpr cells were designed. First, continuous administration of the monoclonal antibody F23.1 (specific for V beta 8 products) resulted in a significant depletion of V beta 8+ cells and prevented the manifestation of lymph accumulation at the same time as it reduced the serological, clinical, and histopathological signs of autoimmune disease. Along the same line, administration of either F23.1 or two different anti-F23.1 anti-idiotypic antibodies to MRL/Mp-lpr/lpr mothers elicited, in the offspring, the production of antibodies sharing a recurrent idiotype with F23.1 and resulted in long-term amelioration of autoimmunity and lymphadenopathy. Thus, a strategy aimed at specifically reducing the frequency of a subset of lpr cells proved successful in mitigating the autoimmune process.
Effects of RNA on the developmental potentiality of the posterior primitive streak of the chick blastoderm. (1966)

Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans the biological, physical, and social sciences.
A permanganic etchant for polyolefines (1979)

Abstract A permanganic etchant has been developed which reveals lamellar and other fine detail in surfaces of at least three crystalline polyolefines, viz., polyethylene (of both high and low density), isotactic polypropylene, and isotactic poly(4‐methylpentene‐1). In typical treatments of high‐density polyethylene ca. 2 μm of material is removed with defective regions suffering preferential attack. The etchant also discriminates between lamellar orientations, eating deeper where side surfaces of laminae are exposed than on fold surfaces, and between different polymers, attacking isotactic polypropylene more strongly than polyethylene. Comparison with other techniques authenticates the detail exposed and samples appear to be otherwise unaltered by their treatment. Besides normal imaging, it is also possible to use etched samples for transmission diffraction studies in the electron microscope. The method has very considerable application for revealing lamellar details in crystalline polyolefines (which can be chosen to be representative or selective according to the nature of the surface used). Examples are given of a wide variety of melt‐crystallized morphologies for the three polymers cited and also of lamellae in a drawn polyethylene sample. It is pointed out that permanganic etching is complementary to the technique of chlorosulfonation used to stain polyethylene in a similar way as bright field microscopy is to dark field.
Radical-Enhanced Atomic Layer Deposition of Metallic Copper Thin Films (2004)

Radical-enhanced atomic layer deposition (REALD) of metallic copper films from copper(II)acetylacetonate and hydrogen radicals was studied. For this work, a new kind of REALD reactor was developed by adding a surface-wave launcher type of microwave plasma source to an inert gas-valved flow-type ALD reactor. The copper films, grown at 140°C, were polycrystalline, exhibited low resistivity, 15 μΩ cm for a 25 nm thick film, and had relatively low impurity levels. The films had excellent adhesion, and they grew conformally. The successful incorporation of the radical source to the ALD reactor encourages the study of other challenging ALD processes. © 2004 The Electrochemical Society. All rights reserved.
Methacrylamide Polymers with Hydrolysis-Sensitive Cationic Side Groups as Degradable Gene Carriers (2006)

Water-soluble polymers with hydrolyzable cationic side groups (structure of the monomers are shown in Figure 1) were synthesized and evaluated as DNA delivery systems. The polymers, except for pHPMA-NHEM, were able to condense plasmid DNA into positively charged nanosized particles. The rate of hydrolysis at 37 degrees C and pH 7.4 of the side groups differed widely; the fastest rate of hydrolysis was observed for HPMA-DEAE (half-life of 2 h), while HPMA-DMAPr had the lowest rate of hydrolysis (half-life of 70 h). In line with this, pHPMA-DEAE-based polyplexes showed the fastest destabilization of the polyplexes at 37 degrees C and pH 7.4. Polyplexes based on pHPMA-DEAE, pHPMA-DMAE, and pHPMA-MPPM showed release of intact DNA within 24, 48, and 48 h, respectively, after incubation at 37 degrees C and pH 7.4. PHPMA-DEAE and pHPMA-MPPM based polyplexes showed the highest transfection activity (almost twice as active as pEI). Importantly, the pHPMA-DEAE, pHPMA-MPPM, and pHPMA-BDMPAP polyplexes preserved their transfection activity in the presence of serum proteins. All polymers investigated showed a substantial lower in vitro cytotoxicity than pEI. In conclusion, pHPMA-based polyplexes are an attractive class of biodegradable vectors for nonviral gene delivery.
(E)-β-Ocimene and Myrcene Synthase Genes of Floral Scent Biosynthesis in Snapdragon: Function and Expression of Three Terpene Synthase Genes of a New Terpene Synthase Subfamily (2003)

Snapdragon flowers emit two monoterpene olefins, myrcene and (E)-beta-ocimene, derived from geranyl diphosphate, in addition to a major phenylpropanoid floral scent component, methylbenzoate. Emission of these monoterpenes is regulated developmentally and follows diurnal rhythms controlled by a circadian clock. Using a functional genomics approach, we have isolated and characterized three closely related cDNAs from a snapdragon petal-specific library that encode two myrcene synthases (ama1e20 and ama0c15) and an (E)-beta-ocimene synthase (ama0a23). Although the two myrcene synthases are almost identical (98%), except for the N-terminal 13 amino acids, and are catalytically active, yielding a single monoterpene product, myrcene, only ama0c15 is expressed at a high level in flowers and contributes to floral myrcene emission. (E)-beta-Ocimene synthase is highly similar to snapdragon myrcene synthases (92% amino acid identity) and produces predominantly (E)-beta-ocimene (97% of total monoterpene olefin product) with small amounts of (Z)-beta-ocimene and myrcene. These newly isolated snapdragon monoterpene synthases, together with Arabidopsis AtTPS14 (At1g61680), define a new subfamily of the terpene synthase (TPS) family designated the Tps-g group. Members of this new Tps-g group lack the RRx(8)W motif, which is a characteristic feature of the Tps-d and Tps-b monoterpene synthases, suggesting that the reaction mechanism of Tps-g monoterpene synthase product formation does not proceed via an RR-dependent isomerization of geranyl diphosphate to 3S-linalyl diphosphate, as shown previously for limonene cyclase. Analyses of tissue-specific, developmental, and rhythmic expression of these monoterpene synthase genes in snapdragon flowers revealed coordinated regulation of phenylpropanoid and isoprenoid scent production.
Time Course Study of the Chromosome-Type Breakage-Fusion-Bridge Cycle in Maize (1999)

The B chromosome of maize has been used in a study of dicentric chromosomes. TB-9Sb is a translocation between the B and chromosome 9. The B-9 of TB-9Sb carries 60% of the short arm of 9. For construction of dicentrics, a modified B-9 chromosome was used, B-9-Dp9. It consists of the B-9 chromosome plus a duplicated 9S region attached to the distal end. In meiosis, fold-back pairing and crossing over in the duplicated region gives a chromatid-type dicentric B-9 that subsequently initiates a chromatid-type breakage-fusion-bridge cycle. In the male, it forms a single bridge in anaphase II of meiosis and at the first pollen mitosis. However, the cycle is interrupted by nondisjunction of the B centromere at the second pollen mitosis, which sends the B-9 dicentric to one pole and converts it from a chromatid dicentric to a chromosome dicentric. As expected, the new dicentric undergoes the chromosome-type breakage-fusion-bridge cycle and produces double bridges. A large number of plants with chromosome dicentrics were produced in this way. The presence of double bridges in the root cells of plants with a chromosome dicentric was studied during the first 10 wk of development. It was found that the number of plants and cells showing double bridges declined steadily over the 10-wk period. Several lines of evidence indicate that there was no specific developmental time for dicentric loss. "Healing" of broken chromosomes produced by dicentric breakage accounted for much of the dicentric loss. Healing produced a wide range of derived B-9 chromosomes, some large and some small. A group of minichromosomes found in these experiments probably represents the small end of the scale for B-9 derivatives.
Inhibition of expression of SV40 virus large T-antigen by antisense oligodeoxyribonucleotides. (1989)

Expression of large T-antigen in COS cells can be inhibited by treatment of cell monolayers with oligodeoxyribonucleotides complementary to large T mRNA, which were covalently linked to poly-L-lysine. Strongest inhibition was observed with conjugates of oligodeoxynucleotides that hybridize to the sequence immediately 3' to the cap structure of the mRNA. Treatment of SV40 virus-infected CV-1 cells with the same conjugates reduces the virus-induced large T-antigen expression by more than 80%.
Microbiology of foaming in activated sludge plants (1990)

Journal Article Microbiology of foaming in activated sludge plants Get access J. A. Soddell, J. A. Soddell Biotechnology Research Centre, Dept. of Biological and Chemical Sciences, Bendigo College of Advanced Education, PO Box 199, Bendigo, Victoria, 3550, Australia Search for other works by this author on: Oxford Academic Google Scholar R.J. Seviour R.J. Seviour Biotechnology Research Centre, Dept. of Biological and Chemical Sciences, Bendigo College of Advanced Education, PO Box 199, Bendigo, Victoria, 3550, Australia Search for other works by this author on: Oxford Academic Google Scholar Journal of Applied Bacteriology, Volume 69, Issue 2, 1 August 1990, Pages 145–176, https://doi.org/10.1111/j.1365-2672.1990.tb01506.x Published: 01 August 1990 Article history Accepted: 05 March 1990 Published: 01 August 1990