gebhart/patrepeval huggingface dataset:
Sequence and Structure Determinants of Drosophila Hsp70 mRNA Translation: 5'-UTR Secondary Structure Specifically Inhibits Heat Shock Protein mRNA Translation (1996)

Preferential translation of Drosophila heat shock protein 70 (Hsp70) mRNA requires only the 5'-untranslated region (5'-UTR). The sequence of this region suggests that it has relatively little secondary structure, which may facilitate efficient protein synthesis initiation. To determine whether minimal 5'-UTR secondary structure is required for preferential translation during heat shock, the effect of introducing stem-loops into the Hsp70 mRNA 5'-UTR was measured. Stem-loops of -11 kcal/mol abolished translation during heat shock, but did not reduce translation in non-heat shocked cells. A -22 kcal/mol stem-loop was required to comparably inhibit translation during growth at normal temperatures. To investigate whether specific sequence elements are also required for efficient preferential translation, deletion and mutation analyses were conducted in a truncated Hsp70 5'-UTR containing only the cap-proximal and AUG-proximal segments. Linker-scanner mutations in the cap-proximal segment (+1 to +37) did not impair translation. Re-ordering the segments reduced mRNA translational efficiency by 50%. Deleting the AUG-proximal segment severely inhibited translation. A 5-extension of the full-length leader specifically impaired heat shock translation. These results indicate that heat shock reduces the capacity to unwind 5-UTR secondary structure, allowing only mRNAs with minimal 5'-UTR secondary structure to be efficiently translated. A function for specific sequences is also suggested.
Testing for AIDS: Uses and Abuses (1990)

In response to the public outcry for mandatory testing for AIDS, this Article explores the major issues concerning the identification of persons with AIDS in society. The Article first studies testing procedures and the purposes behind them to determine if a call for mandatory testing of the general populace would better achieve society's objectives for identifying individuals with AIDS. Concluding that testing should not be required of the population as a whole, the Article then explores whether testing should be required of certain subpopulations which society perceives as likely to have or to spread the disease. In this context, too, the Article concludes that mandatory testing would be unwarranted, and that funds proposed for mandatory testing would be put to better use in education and universal precautions to prevent the further spread of AIDS.
Ruptured abdominal aortic aneurysm: a five year review. (1980)

This review of patients presenting with ruptured abdominal aortic aneurysm over a five year period shows a high mortality. The natural history of the problem of abdominal aortic aneurysm and the place of elective aneurysmectomy is stressed. Factors affecting the outcome after rupture in the forty-six patients presenting in this five year period are reviewed. Ten patients survived to leave hospital.
Effects of lovastatin on breast cancer cells: a proteo-metabonomic study (2010)

The combination of proteomics and metabonomics enabled us to identify several key targets essential to the antitumor activity of lovastatin. Our results imply that lovastatin has the potential to reduce the growth of breast cancer cells.
Electron Optical Properties of Microcolumn with Field Emitter (2013)

We present the electron optical properties of a newly designed microcolumn. The microcolumn consists of an objective lens and an electron gun, which is composed of a microscale field emitter and a condenser lens. An acceleration lens was used as the objective lens. Each component was optimized to maximize its own function while minimizing its impact on the functions of the other components. The current–voltage characteristics of each electrode were evaluated. The current variation characteristics of each electrode indicated that each optimized structure could be used to control the electron beam. The objective lens could also focus the electron beam to a diameter of approximately 40 µm at a working distance of 2 mm and 400× magnification when no acceleration electric field was applied between the microcolumn and the anode.
Antibody–Drug Conjugates for Cancer Therapy (2016)

Antibody-drug conjugates (ADCs) take advantage of the specificity of a monoclonal antibody to deliver a linked cytotoxic agent directly into a tumour cell. The development of these compounds provides exciting opportunities for improvements in patient care. Here, we review the key issues impacting on the clinical success of ADCs in cancer therapy. Like many other developing therapeutic classes, there remain challenges in the design and optimisation of these compounds. As the clinical applications for ADCs continue to expand, key strategies to improve patient outcomes include better patient selection for treatment and the identification of mechanisms of therapy resistance.
Purification and properties of L-malic enzyme from Escherichia coli (1970)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTPurification and properties of L-malic enzyme from Escherichia coliJoseph Spina Jr., Harold J. Bright, and Joel RosenbloomCite this: Biochemistry 1970, 9, 19, 3794–3801Publication Date (Print):September 15, 1970Publication History Published online1 May 2002Published inissue 15 September 1970https://pubs.acs.org/doi/10.1021/bi00821a019https://doi.org/10.1021/bi00821a019research-articleACS PublicationsRequest reuse permissionsArticle Views129Altmetric-Citations62LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
ABSORBENT ORDERED FILTERS AND THEIR FUZZIFICATIONS IN IMPLICATIVE SEMIGROUPS (2009)

The notion of absorbent ordered filters in implicative semigroups is introduced, and its fuzzification is considered. Relations among (fuzzy) or- dered filters, (fuzzy) absorbent ordered filters, and (fuzzy) positive implicative ordered filters are stated. The extensionproperty for (fuzzy) absorbent or- dered filters is established. Conditions for (fuzzy) ordered filters to be (fuzzy) absorbent ordered filters are provided. The notions of normal/maximal fuzzy absorbent ordered filters and complete absorbent ordered filters are introduced and their properties are investigated.
Ultrahigh sensitivity of slow-light gyroscope (2000)

Slow light generated by Electromagnetically Induced Transparency is extremely susceptible with respect to Doppler detuning. Consequently, slow-light gyroscopes should have ultrahigh sensitivity.
Multilevel agglomerative edge bundling for visualizing large graphs (2011)

Graphs are often used to encapsulate relationships between objects. Node-link diagrams, commonly used to visualize graphs, suffer from visual clutter on large graphs. Edge bundling is an effective technique for alleviating clutter and revealing high-level edge patterns. Previous methods for general graph layouts either require a control mesh to guide the bundling process, which can introduce high variation in curvature along the bundles, or all-to-all force and compatibility calculations, which is not scalable. We propose a multilevel agglomerative edge bundling method based on a principled approach of minimizing ink needed to represent edges, with additional constraints on the curvature of the resulting splines. The proposed method is much faster than previous ones, able to bundle hundreds of thousands of edges in seconds, and one million edges in a few minutes.
Osmotin overexpression in potato delays development ofdisease symptoms. (1994)

Transgenic potato and tobacco plants carrying the osmotin gene under the control of the cauliflower mosaic virus 35S promoter constitutively overexpressed osmotin to a level of approximately 2% of total cellular protein. Leaves of transgenic potato plants exhibited delayed development of disease symptoms after inoculation with spore suspensions of Phytophthora infestans, which is the cause of late blight disease of potato. In contrast, transgenic tobacco plants did not display any change in the development of disease symptoms when challenged with either spore suspensions or fungal mycelia of Phytophthora parasitica var. nicotianae. Using in vitro assays, purified osmotin was found to be more effective against P. infestans. Some inhibition of P. parasitica also was observed in vitro even though no in vivo effect could be established.
Bioelectrochemical fuel‐cells operated by the cyanobacterium, Anabaena variabilis (1985)

Abstract Substantial electric output was delivered from the bioelectrochemical fuel‐cells operated under anaerobic conditions by Anabaena variabilis strain M‐2 and 2‐hydroxy‐1,4‐naphthoquinone. There was a linear relationship between the coulombic output of the fuel‐cells operated in the dark and the glycogen content of the organisms. The coulombic output was increased substantially in the light; the increase was observed even in the absence of CO 2 . Oxygen was evolved by Anabaena cells under the operating conditions of the fuel‐cells. The results demonstrated that the source of electricity obtained from the fuel‐cells is endogenous glycogen in the dark and both glycogen and electrons produced by photosynthetic oxidation of water in the light.
Dimerization of Lithiated Terminal Aziridines (2005)

Let's get together: Dimerization of enantiopure terminal aziridines by lithiation gives efficiently N-protected 2-ene-1,4-diamines with complete selectivity for the E olefin (see scheme). The usefulness of the method was demonstrated in a concise synthesis of (R,S,S,R)-2,5-diamino-1,6-diphenylhexane-3,4-diol, the core unit of many extremely potent HIV protease inhibitors and also asymmetric catalysts. Supporting information for this article is available on the WWW under http://www.wiley-vch.de/contents/jc_2002/2006/z503303_s.pdf or from the author. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.
Mutation Status of the Residual ATM Allele Is an Important Determinant of the Cellular Response to Chemotherapy and Survival in Patients With Chronic Lymphocytic Leukemia Containing an 11q Deletion (2007)

CLL with 11q deletion can be divided into two subgroups based on the integrity of the residual ATM allele. Patients with complete loss of ATM function, due to biallelic ATM defects, have defective responses to cytotoxic chemotherapeutics in vitro and a poorer clinical outcome. ATM mutant subclones can develop during an individual's disease course and give rise to additional expansion of the 11q deleted subclone.
SAP HANA distributed in-memory database system: Transaction, session, and metadata management (2013)

One of the core principles of the SAP HANA database system is the comprehensive support of distributed query facility. Supporting scale-out scenarios was one of the major design principles of the system from the very beginning. Within this paper, we first give an overview of the overall functionality with respect to data allocation, metadata caching and query routing. We then dive into some level of detail for specific topics and explain features and methods not common in traditional disk-based database systems. In summary, the paper provides a comprehensive overview of distributed query processing in SAP HANA database to achieve scalability to handle large databases and heterogeneous types of workloads.
Self assembled nanoparticle wires by discontinuous vertical colloidal deposition (2005)

We report a simple, one-step method for assembling spherical nanoparticles into wires without the need for lithographic templating. It is effective for a variety of conducting and nonconducting nanoparticles and substrates, and the only material requirement is that the nanoparticles be placed in a colloidal suspension that is wettable on the desired substrate. The shape of the meniscus defines the wire’s geometry, and we report the synthesis and physical properties of wires several millimeters long by a few micrometers wide. As we demonstrate here, the technique is fast and easily controlled, and can be used to make integrated nanoparticle wire arrays.
Neurotoxicity of methylglyoxal and 3‐deoxyglucosone on cultured cortical neurons: Synergism between glycation and oxidative stress, possibly involved in neurodegenerative diseases (1999)

In this study, we investigate the neurotoxicity of glycation, particularly early-stage glycation, and its mechanisms, which are possibly synergized with oxidative stress. Methylglyoxal (MG) and 3-deoxyglucosone (3DG), intermediate products of glycation, are known to further accelerate glycation and advanced glycation endproducts (AGEs) formation. Both compounds showed neurotoxicity on cultured cortical neurons and these effects were associated with reactive oxygen species production followed by neuronal apoptosis. Pretreatment with N-acetylcysteine induced neuroprotection against MG and 3DG. Cotreatment, but not pretreatment, with aminoguanidine protected neurons against the neurotoxicities of both compounds. The present study provides the first evidence that MG and 3DG are neurotoxic to cortical neurons in culture. Interference with the process by which glycation and AGEs formation occur may provide new therapeutic opportunities to reduce the pathophysiological changes associated with neurodegeneration, if, as indicated here, the participation of glycoxidation in the pathogenesis of neurodegenerative diseases is essential. J. Neurosci. Res. 57:280–289, 1999. © 1999 Wiley-Liss, Inc.
Molecular and Biochemical Characterization of Three WD-Repeat-Domain-containing Inositol Polyphosphate 5-Phosphatases in Arabidopsis thaliana (2004)

Type II inositol polyphosphate 5-phosphatases (5PTases) in animals and yeast have been known to be important for regulating inositol and phospholipid signaling by hydrolyzing phosphate from both inositol polyphosphates and phosphoinositides. However, the molecular and biochemical properties of type II 5PTases in plants have not yet been studied. In this report, we show that three Arabidopsis genes, At5PTase12, At5PTase13 and At5PTase14, encode proteins with a 5PTase domain and a WD-repeat domain, a novel combination present only in plant 5PTases. We demonstrate that these genes are differentially expressed in Arabidopsis organs and At5PTase13 is induced in response to ABA and wounding treatments. Our biochemical studies reveal that although both At5PTase12 and At5PTase13 exhibit phosphatase activity toward only Ins(1,4,5)P3, At5PTase14 hydrolyzes phosphate from PI(4,5)P2, PI(3,4,5)P3 and Ins(1,4,5)P3 with the highest substrate affinity toward PI(4,5)P2. All three At5PTases require Mg2+ for their phosphatase activities. Our molecular and biochemical characterization of three WD-repeat-domain-containing At5PTases provides a foundation for further elucidation of their cellular functions in Arabidopsis.
Lysyl Hydroxylase 3 Is a Multifunctional Protein Possessing Collagen Glucosyltransferase Activity (2000)

Lysyl hydroxylase (EC ) and glucosyltransferase (EC ) are enzymes involved in post-translational modifications during collagen biosynthesis. We reveal in this paper that the protein produced by the cDNA for human lysyl hydroxylase isoform 3 (LH3) has both lysyl hydroxylase and glucosyltransferase (GGT) activities. The other known lysyl hydroxylase isoforms, LH1, LH2a, and LH2b, have no GGT activity. Furthermore, antibodies recognizing the amino acid sequence of human LH3 and those against a highly purified chicken GGT partially inhibited the GGT activity. Similarly, a partial inhibition was observed when these antibodies were tested against GGT extracted from human skin fibroblasts. In vitro mutagenesis experiments demonstrate that the amino acids involved in the GGT active site differ from those required for LH3 activity.
AFCRL Infrared Sky Survey. Volume I. Catalog of Observations at 4, 11, and 20 Microns (1975)

Abstract : A survey of the sky in the intermediate infrared spectral region is reported. The objective was to obtain the brightness and spatial distribution of a representative sample of the types of celestial objects that emit strongly in the infrared. Of primary concern was the determination of the positions of unusual sources of emission with sufficient accuracy to enable them to be acquired by ground based telescopes for further detailed investigation.
Molecular cloning and expression of Chlamydia trachomatis major outer membrane protein antigens in Escherichia coli (1985)

DNA obtained from Chlamydia trachomatis (serovar L2) was partially digested with DNase I and inserted into the beta-galactosidase gene of bacteriophage lambda gt11. Seven recombinants were selected that produced immunoreactive fusion proteins which were detected with anti-C. trachomatis rabbit serum. One recombinant, designated lambda gt11/L2/33, reacted with various monoclonal antibodies that recognize species-, subspecies-, and type-specific determinants on the chlamydial major outer membrane protein (MOMP). Immunoblot analysis of a lambda gt11/L2/33 lysogen revealed a fusion protein that expressed a approximately 15,000-dalton carboxyl-terminal peptide of the chlamydial MOMP. This moiety of the MOMP possesses epitopes responsible for each of the unique reactivities demonstrated by anti-MOMP monoclonal antibodies. The lambda gt11/L2/33 recombinant contained a 1.1-kilobase DNA insert which hybridized to DNA isolated from each of the 15 C. trachomatis serovars.
Transcutaneous Immunization: An Overview of Advantages, Disease Targets, Vaccines, and Delivery Technologies (2010)

Skin is an immunologically active tissue composed of specialized cells and agents that capture and process antigens to confer immune protection. Transcutaneous immunization takes advantage of the skin immune network by inducing a protective immune response against topically applied antigens. This mode of vaccination presents a novel and attractive approach for needle-free immunization that is safe, noninvasive, and overcomes many of the limitations associated with needle-based administrations. In this review we will discuss the developments in the field of transcutaneous immunization in the past decade with special emphasis on disease targets and vaccine delivery technologies. We will also briefly discuss the challenges that need to be overcome to translate early laboratory successes in transcutaneous immunization into the development of effective clinical prophylactics.
Direct Interaction with Nup153 Mediates Binding of Tpr to the Periphery of the Nuclear Pore Complex (2003)

Tpr is a 267-kDa protein forming coiled coil-dominated homodimers that locate at the nucleoplasmic side of the nuclear pore complex (NPC). The proteins that tether Tpr to this location are unknown. Moreover, the question whether Tpr itself might act as a scaffold onto which other NPC components need to be assembled has not been answered to date. To assess Tpr's role as an architectural element of the NPC, we have studied the sequential disassembly and reassembly of NPCs in mitotic cells, paralleled by studies of cells depleted of Tpr as a result of posttranscriptional tpr gene silencing by RNA interference (RNAi). NPC assembly and recruitment of several nucleoporins, including Nup50, Nup93, Nup96, Nup98, Nup107, and Nup153, in anaphase/early telophase is shown to precede NPC association of Tpr in late telophase. In accordance, cellular depletion of Tpr by RNAi does not forestall binding of these nucleoporins to the NPC. In a search for proteins that moor Tpr to the NPC, we have combined the RNAi approach with affinity-chromatography and yeast two-hybrid interaction studies, leading to the identification of nucleoporin Nup153 as the binding partner for Tpr. The specificity of this interaction is demonstrated by its sensitivity to Tpr amino acid substitution mutations that abolish Tpr's ability to adhere to the NPC and affect the direct binding of Tpr to Nup153. Accordingly, cellular depletion of Nup153 by RNAi is shown to result in mislocalization of Tpr to the nuclear interior. Nup153 deficiency also causes mislocalization of Nup50 but has no direct effect on NPC localization of the other nucleoporins studied in this investigation. In summary, these results render Tpr a protein only peripherally attached to the NPC that does not act as an essential scaffold for other nucleoporins.
A FAST IMPLEMENTATION OF THE ISODATA CLUSTERING ALGORITHM (2007)

Clustering is central to many image processing and remote sensing applications. ISODATA is one of the most popular and widely used clustering methods in geoscience applications, but it can run slowly, particularly with large data sets. We present a more efficient approach to ISODATA clustering, which achieves better running times by storing the points in a kd-tree and through a modification of the way in which the algorithm estimates the dispersion of each cluster. We also present an approximate version of the algorithm which allows the user to further improve the running time, at the expense of lower fidelity in computing the nearest cluster center to each point. We provide both theoretical and empirical justification that our modified approach produces clusterings that are very similar to those produced by the standard ISODATA approach. We also provide empirical studies on both synthetic data and remotely sensed Landsat and MODIS images that show that our approach has significantly lower running times.
Phosphorylcholine mimics the effects of ES‐62 on macrophages and dendritic cells (2006)

Modulation of macrophage/dendritic cell (DC) cytokine production by the filarial nematode phosphorylcholine (PC)-containing product, ES-62, is mediated by Toll-like receptor (TLR) 4 and signal transduction depends on the TLR adaptor MyD88. Intriguingly, comparison of TLR4 knock-out (ko) mice with TLR4 mutant C3H/HeJ mice indicates that ES-62 cytokine responses are not dependent on the Pro712 residue of TLR4, which is crucial for the response to bacterial lipopolysaccharide (LPS). Because other immunomodulatory effects of ES-62 have been attributed to PC we have now investigated, using PC conjugated to ovalbumin (PC-Ova), whether PC is responsible for the interaction of ES-62 with TLR4. PC-Ova mimicked the modulation of interleukin (IL)-12 production by ES-62 in a TLR4- and MyD88-dependent manner and as with native ES-62, PC-Ova effects were not dependent on Pro712. Furthermore, both native ES-62 and PC-Ova suppressed Akt phosphorylation, whereas neither altered the activation of p38 or Erk MAP kinases. To rule out any role for the ES-62 protein component, we tested a PC-free recombinant ES-62 (rES-62) generated in the yeast Pichia pastoris. Surprisingly, rES-62 also modulated IL-12 production, but in a TLR4/MyD88-independent manner. Furthermore, rES-62 strongly activated both the p38 and Erk MAP kinases and Akt. However, recent biophysical analysis suggests there are differences in folding/shape between native and rES-62 and hence data obtained with the latter should be treated with caution. Nevertheless, although our study indicates that PC is likely to be primarily responsible for the modulation of cytokine production observed with native ES-62, an immunomodulatory role for the protein component cannot be ruled out.