gebhart/patrepeval huggingface dataset:
Selective detection of hazardous VOCs for indoor air quality applications using a virtual gas sensor array (2014)

Abstract. An approach for detecting hazardous volatile organic compounds (VOCs) in ppb and sub-ppb concentrations is presented. Using three types of metal oxide semiconductor (MOS) gas sensors in temperature cycled operation, formaldehyde, benzene and naphthalene in trace concentrations, reflecting threshold limit values as proposed by the WHO and European national health institutions, are successfully identified against a varying ethanol background of up to 2 ppm. For signal processing, linear discriminant analysis is applied to single sensor data and sensor fusion data. Integrated field test sensor systems for monitoring of indoor air quality (IAQ) using the same types of gas sensors were characterized using the same gas measurement setup and data processing. Performance of the systems is reduced due to gas emissions from the hardware components. These contaminations have been investigated using analytical methods. Despite the reduced sensitivity, concentrations of the target VOCs in the ppb range (100 ppb of formaldehyde; 5 ppb of benzene; 20 ppb of naphthalene) are still clearly detectable with the systems, especially when using the sensor fusion method for combining data of the different MOS sensor types.
Adrenocorticotropic hormone stimulates a transient calcium uptake in rat lymphocytes (1994)

Freshly isolated rat lymphocytes were tested for corticotropin (ACTH)-dependent calcium uptake. Physiological levels of corticotropin (0.01-1 nM) were found to stimulate both an uptake of 45Ca2+ and a rise in cAMP. The calcium uptake was delayed by 2 min after ACTH addition, but was rapid and transient after the onset of uptake. The extent of calcium uptake was dose dependent on the corticotropin concentration and reached a maximum by 1 nM. Several fragments of corticotropin were tested for activity; both full-length 1-39 and a functional truncated form, 1-25, had equivalent effects on 45Ca influx at 1 nM; however, alpha MSH-(1-13), ACTH-(11-24), or a mixture of alpha MSH and ACTH-(11-24) had no effect on 45Ca influx. Extracellular calcium uptake was blocked by the calcium channel blockers lanthanum, diltiazem, nifedipine, and omega-conotoxin. Splenic lymphocytes that express ACTH receptors had ligand-dependent calcium uptake, but thymocytes that lack ACTH receptors had no ligand-dependent calcium uptake. A mouse adrenal cell line, Y-1, showed the same 45Ca uptake kinetics. These findings demonstrate that both lymphocytes and adrenal cells have a functional ACTH-dependent calcium uptake mechanism.
A Carboxypeptidase Inhibitor from the Medical Leech Hirudo medicinalis (1998)

A novel metallocarboxypeptidase inhibitor was isolated from the medical leech Hirudo medicinalis. Amino acid sequence analysis provided a nearly complete primary structure. which was subsequently verified and completed by cDNA cloning using reverse transcriptase-polymerase chain reaction/rapid amplification of cDNA end techniques. The inhibitor, called LCI (leech carboxypeptidase inhibitor), is a cysteine-rich polypeptide composed of 66 amino acid residues. It does not show sequence similarity to any other protein except at its C-terminal end. In this region, the inhibitor shares the amino acid sequence -Thr-Cys-X-Pro-Tyr-Val-X with Solanacea carboxypeptidase inhibitors, suggesting a similar mechanism of inhibition where the C-terminal tail of the inhibitor interacts with the active center of metallocarboxypeptidases in a substrate-like manner. This hypothesis is supported by the hydrolytic release of the C-terminal glutamic acid residue of LCI after binding to the enzyme. Heterologous overexpression of LCI in Escherichia coli, either into the medium or as an intracellular thioredoxin fusion protein, yields a protein with full inhibitory activity. Both in the natural and recombinant forms, LCI is a tightly binding, competitive inhibitor of different types of pancreatic-like carboxypeptidases, with equilibrium dissociation constants Ki of 0.2-0.4 x 10(-9) M for the complexes with the pancreatic enzymes A1, A2, and B and plasma carboxypeptidase B. Circular dichroism and nuclear magnetic resonance spectroscopy analysis indicate that recombinant LCI is a compactly folded globular protein, stable to a wide range of pH and denaturing conditions.
RIBONUCLEIC ACIDS FROM YEAST WHICH CONTAIN A FIFTH NUCLEOTIDE (1957)

All recent methods for the isolation of the ribonucleic acids from yeast yield only 20 to 70 per cent of the ribonucleic acids that can be assumed to be present on the basis of quantitative analyses. There have been no studies regarding the nature of the ribonucleic acids that are lost during isolation, but it has tacitly been assumed that those which are lost have the same properties as those which are isolated. In the procedure of Crestfield, Smith, and Allen (I), 60 to 70 per cent of the ribonucleic acids from bakers’ yeast is isolated by a final precipitation from a 1 M solution of sodium chloride at 0”. 10 to 20 per cent of the total ribonucleic acids of the yeast is soluble in a 1 M solution of sodium chloride, together with certain proteins and deoxyribonucleic acids. The present communication deals with the isolation, purification, and characterization of the ribonucleic acids which are soluble in sodium chloride, and also describes the isolation and certain properties of a fifth nucleotide component which became evident in studying the action of ribonuclease on these ribonucleic acids. Preparation of Fractions
Antecedents to hospital deaths (2001)

There is a high incidence of serious vital sign abnormalities in the period before potentially preventable hospital deaths. These antecedents may identify patients who would benefit from earlier intervention.
A Fully Synthetic Therapeutic Vaccine Candidate Targeting Carcinoma-Associated Tn Carbohydrate Antigen Induces Tumor-Specific Antibodies in Nonhuman Primates (2004)

We recently developed an efficient strategy based on a fully synthetic dendrimeric carbohydrate display (multiple antigenic glycopeptide; MAG) to induce anticarbohydrate antibody responses for therapeutic vaccination against cancer. Here, we show the superior efficacy of the MAG strategy over the traditional keyhole limpet hemocyanin glycoconjugate to elicit an anticarbohydrate IgG response against the tumor-associated Tn antigen. We highlight the influence of the aglyconic carrier elements of such a tumor antigen for their recognition by the immune system. Finally, we additionally developed the MAG system by introducing promiscuous HLA-restricted T-helper epitopes and performed its immunological evaluation in nonhuman primates. MAG:Tn vaccines induced in all of the animals strong tumor-specific anti-Tn antibodies that can mediate antibody-dependent cell cytotoxicity against human tumor. Therefore, the preclinical evaluation of the MAG:Tn vaccine demonstrates that it represents a safe and highly promising immunotherapeutic molecularly defined tool for targeting breast, colon, and prostate cancers that express the carbohydrate Tn antigen.
Endovascular Cooling for Moderate Hypothermia in Patients With Acute Stroke: First Results of a Novel Approach (2001)

Induction and maintenance of hypothermia with an intravenous cooling device are feasible. The safety of this approach remains to be evaluated.
A Transesophageal Echocardiography Technique to Locate the Kidney and Monitor Renal Perfusion (2013)

Monitoring the renal arterial Doppler flow velocity indices, the resistive index and pulsatility index, with ultrasound may help predict renal dysfunction. However, such monitoring has been done intermittently by transcutaneous ultrasound in the postoperative intensive care setting. In the operating room, transesophageal echocardiography (TEE) is an alternative to transcutaneous ultrasound for obtaining indices of renal perfusion. However, it is difficult to locate the right kidney using TEE. We propose a new technique to locate the left kidney that, in our experience, is simple and easy to perform. We believe, starting from a transgastric left ventricular short-axis view, turning left to locate the abdominal aorta, and following it to the origin of the left renal artery may help locate the left kidney faster than previously described techniques. We also propose a new technique to monitor these Doppler indices using TEE during the intraoperative period.
Isolation and Characterization of a Platelet Membrane Protein Related to the Vitronectin Receptor (1989)

Glycoprotein IIb-IIIa is the most prominent Arg-Gly-Asp (RGD)-binding adhesion receptor on platelets. By affinity chromatography on an immobilized RGD peptide, we have investigated the possible existence of other platelet-associated adhesion receptors that bind RGD peptides. When an octyl glucoside extract of surface-radioiodinated platelets was applied to an affinity matrix of KYGRGDS-coupled Sepharose 4B, a 160-kDa-labeled protein (P160) and GPIIb-IIIa bound and were specifically eluted by soluble GRGDSP peptide, but not by the variant GRGESP peptide. Furthermore, a dodecapeptide corresponding to fibrinogen gamma 400-411 eluted only GPIIb-IIIa but not P160 from the RGD affinity matrix. Characterization of P160 by two-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis and by the O'Farrell gel electrophoresis system indicated that P160 is a component of platelet GPIc. GoH3, a monoclonal antibody recognizing the alpha subunit of the very late antigen-6, failed to immunoprecipitate P160 from the RGD eluate, indicating that it did not contain the very late antigen-6 alpha subunit. In immunoblots, P160 reacted specifically with a polyclonal anti-peptide antibody recognizing the alpha subunit of the vitronectin receptor (VnR), but not with the monoclonal anti-GPIIb antibody PMI-1, suggesting that P160 is the alpha subunit of platelet VnR. This possibility was further substantiated by the complete identity between the determined amino-terminal sequence of P160 and the known sequence of the VnR alpha subunit. Moreover, direct association of P160 with a beta subunit having an apparent molecular weight similar to that of GPIIIa was demonstrated by immunoprecipitation with LM609, an anti-VnR complex monoclonal antibody. These results indicate that the VnR complex is present on platelets and may play a functional role in platelet adhesive reactions.
Identification of coryneform bacteria and related taxa by Fourier-transform infrared (FT-IR) spectroscopy. (2002)

An extensive Fourier-transform infrared (FT-IR) spectroscopy database for the identification of bacteria from the two suborders Micrococcineae and Corynebacterineae (Actinomycetales, Actinobacteria) as well as other morphologically similar genera was established. The database consists of averaged IR spectra from 730 reference strains, covering 220 different species out of 46 genera. A total of 192 species are represented by type strains. The identity of 352 reference strains was determined by comparative 16S rDNA sequence analysis and, if necessary, strains were reclassified accordingly. FT-IR frequency ranges, weights and reproducibility levels were optimized for this section of high-G+C gram-positive bacteria. In an internal validation, 98.1% of 208 strains were correctly identified at the species level. A simulated external validation which was carried out using 544 strains from 54 species out of 16 genera resulted in a correct identification of 87.3% at the species level and 95.4% at the genus level. The performance of this identification system is well within the range of those having been reported in the literature for the identification of coryneform bacteria by phenotypical methods. Coryneform and related taxa display a certain degree of overlapping distribution of different taxonomical markers, leading to a limited differentiation capacity of non-genotypical identification methods in general. However, easy handling, rapid identification within 25 h starting from a single colony, a satisfactory differentiation capacity and low cost, render FT-IR technology clearly superior over other routine methods for the identification of coryneform bacteria and related taxa.
Immunologic attributes of cytokine mobilized peripheral blood stem cells and recovery following transplantation. (1996)

The immunologic attributes of cytokine mobilized peripheral blood stem cell (PSC) products (n = 52) and the resulting reconstitution of the hematopoietic and immunologic system following autologous transplantation were examined in a consecutive population of non-Hodgkin lymphoma (NHL), or solid tumor patients at the University of Nebraska Medical Center. Granulocyte-monocyte colony stimulating factor (GM-CSF)-mobilized PSC products had a high frequency of monocytes (31%) and bands (15%) as compared to normal peripheral blood (PB) cells. The phenotypic analysis of the mobilized PSC product revealed that they had normal levels of CD4+ cells, an increased frequency of CD8+ cells and a corresponding decrease in the CD4+:CD8+ cell ratio as compared to the peripheral blood leukocytes (PBL) of normal individuals. PSC products also had an increase in CD34+ cells as compared to PB. Natural killer (NK) and T cell activity in the PSC products were also lower than that observed in PB. Post-transplantation there was an accelerated reconstitution of NK-cell function in the PB as compared to T cell function (PHA (phytohemagglutinin) mitogenesis) which did not return to normal by day 100 post-transplantation. We also report for the first time high levels of an irradiation resistant suppressor cell activity in the PSC product and in the PB post-transplantation. There was also a concomitant increase in CD4-, CD8-, TCR alpha/beta+ cells (phenotypic homolog of 'natural suppressor' (NS) cells) in the PB post-transplantation. The number of months of prior chemotherapy correlated with PHA response but the NS activity and frequency of CD4-, CD8- and TCR alpha/beta+ cells did not. Further, cytokine mobilization and apheresis appears to contribute to the loss of PHA responsiveness and the increased levels of suppressor cell activity.
Calorimetric investigation of NO and CO adsorption on Pd{100} and the influence of preadsorbed carbon (1997)

The coverage dependencies of the differential heats of adsorption for CO and NO on Pd{100}, at room temperature, are reported using single crystal adsorption calorimetry (SCAC). The initial heat for CO is 165 kJ/mol, falling markedly with increasing coverage due to anomalously strong repulsive interactions between molecules. The formation of a c(2×4) overlayer at half monolayer coverage places severe constraints on the magnitudes of lateral interactions between adsorbates which can fit the data. A realistic lateral interaction model is proposed. The influence of predosed carbon on the heat of adsorption of CO was also investigated. As little as 0.05 ML of C causes a decrease in the initial heat of about 20 kJ/mol; 0.2 ML reduces the heat to 120 kJ/mol. The results suggest long range interactions between C atoms and CO molecules. The initial heat for NO is 155 kJ/mol, decreasing smoothly to about 105 kJ/mol at saturation. The coverage dependencies of the sticking probabilities for both NO and CO exhibits precursor behavior which is considerably diminished in the presence of a high C precoverage.
Biocompatibility Testing of Branched and Linear Polyglycidol (2006)

Polyglycidols are flexible hydrophilic polyethers that are potentially biocompatible polymers based on their similarities to the well-studied poly(ethyleneglycol). Polyglycidols can be prepared as branched or linear polymers by suitable synthetic methods. Biocompatibility testing of these polymers conducted in vitro as well as in vivo are reported here. The in vitro studies included hemocompatibility testing for effects on coagulation (PT and APTT), complement activation, red blood cell aggregation, and whole blood viscosity measurements. In vitro cytotoxicity experiments were also conducted. The results were compared with some of the common biocompatible polymers already in human use. Results from these studies show that polyglycidols are highly biocompatible. Hyperbranched polyglycidols were found to be well tolerated by mice even when injected in high doses.
Management of Simple Nodular Goiter: Current Status and Future Perspectives (2003)

The simple nodular goiter, the etiology of which is multifactorial, encompasses the spectrum from the incidental asymptomatic small solitary nodule to the large intrathoracic goiter, causing pressure symptoms as well as cosmetic complaints. Its management is still the cause of considerable controversy. The mainstay in the diagnostic evaluation is related to functional and morphological characterization with serum TSH and (some kind of) imaging. Because malignancy is just as common in patients with a multinodular goiter as patients with a solitary nodule, we support the increasing use of fine-needle aspiration biopsy (cytology). Most patients need no treatment after malignancy is ruled out. In case of cosmetic or pressure symptoms, the choice in multinodular goiter stands between surgery, which is still the first choice, and radioiodine if uptake is adequate. In addition to surgery, the solitary nodule, whether hot or cold, can be treated with percutaneous ethanol injection therapy. If hot, radioiodine is the therapy of choice. Randomized studies are scarce, and the side effects of nonsurgical therapy are coming into focus. Therefore, the use of the optimum option in the individual patient cannot at present be based on evidence. However, we are of the view that levothyroxine, although widely used, should no longer be recommended routinely for this condition. Within a few years, the introduction of recombinant human TSH and laser therapy may profoundly alter the nonsurgical treatment of simple nodular goiter.
Analysis and Design of Wideband Injection-Locked Ring Oscillators With Multiple-Input Injection (2007)

In this paper, the locking range of the injection-locked ring oscillators is investigated. To improve the injection efficiency and the locking range for superharmonic frequency division, a multiple-injection technique is proposed. Using a 0.18-mum CMOS process, a wideband frequency divider based on a three-stage ring oscillator is implemented for demonstration. With a tunable free-running frequency, the fabricated circuit provides 2:1 and 4:1 frequency division with a single-ended input signal ranging from 13 to 25 and 30 to 45 GHz, respectively. Compared with the case of the single-ended injection, the locking range of the frequency divider almost doubles when multiple-input injection with optimum phases is utilized. The experimental results exhibit good agreement with the theoretical derivation and the circuit simulation.
Arteriovenous Fistulae vs. Arteriovenous Grafts: A Retrospective Review of 1,700 Consecutive Vascular access Cases (2008)

AVF and grafts are both useful in providing VA for patients requiring hemodialysis. Our data shows that grafts are equivalent in long-term patency. Therefore, it is apparent in those patients who are not candidates for an AV fistula; an AV graft for VA should be placed.
Coverslip Mounted-Immersion Cycled In Situ RT-PCR for the Localization of mRNA in Tissue Sections (1998)

An improved method was developed for in situ reverse transcription-polymerase chain reaction (RT-PCR) to detect and localize mRNA in tissue sections. The coverslip mounted-immersion cycled (COSMIC) in situ RT-PCR technique combines the advantages of solution-phase PCR with the tissue immobilization necessary for in situ analysis. The tissue specimen is mounted on an AES-silane-coated coverslip, excess glass is removed and the sample is immersed in reaction mixture in a PCR tube and subjected to thermal cycling. Processing the section on the coverslip is efficient, the thin glass withstands the high temperature cycling and the tissue adheres securely through the process. The specimen is fully exposed to the reagents, and is heated uniformly and accurately according to temperatures programmed into the thermal cycler. An application is described for the detection and localization of the mRNA for surfactant protein A (SP-A) in fetal rat lung tissue.
Metabolite Measurement: Pitfalls to Avoid and Practices to Follow (2017)

Metabolites are the small biological molecules involved in energy conversion and biosynthesis. Studying metabolism is inherently challenging due to metabolites' reactivity, structural diversity, and broad concentration range. Herein, we review the common pitfalls encountered in metabolomics and provide concrete guidelines for obtaining accurate metabolite measurements, focusing on water-soluble primary metabolites. We show how seemingly straightforward sample preparation methods can introduce systematic errors (e.g., owing to interconversion among metabolites) and how proper selection of quenching solvent (e.g., acidic acetonitrile:methanol:water) can mitigate such problems. We discuss the specific strengths, pitfalls, and best practices for each common analytical platform: liquid chromatography-mass spectrometry (LC-MS), gas chromatography-mass spectrometry (GC-MS), nuclear magnetic resonance (NMR), and enzyme assays. Together this information provides a pragmatic knowledge base for carrying out biologically informative metabolite measurements.
Aqueous-based photoresist drying using supercritical carbon dioxide to prevent pattern collapse (2000)

A supercritical drying process was developed to eliminate the capillary forces naturally present during normal drying of photoresist materials. Supercritical carbon dioxide (scCO2), organic solvents and surfactants were used to prevent the collapse of high-aspect-ratio structures fabricated from aqueous-based photoresist. Nondistorted resist lines were patterned with this process with aspect ratios of at least 6.8. Water rinsed resist structures cannot be dried directly with scCO2 due to the low solubility of water in the supercritical phase. In our process we introduced the replacement of the aqueous rinse by n-hexane mediated by a compatible surfactant. The surfactant allowed to incorporate the aqueous phase into micellar microdomains in the organic phase while keeping the interfacial tension at values close to zero. Noncollapsed supercritically dried structures were rewet in n-hexane or water and dried using nitrogen at atmospheric pressure. Under these conditions, the patterns were collapsed as a result of capillary forces acting on the resist walls. The effect of capillary forces on pattern stability were qualitatively compared to the relative surface tension values between n-hexane and water. The advantage of using supercritical CO2 in the drying stage of resists compared to normal drying highlights the importance of eliminating the surface (or interfacial) tension forces created by the rinse fluid, if a reduction of linewidth and spacing between resist lines is pursued, while keeping the aspect ratio constant.