gebhart/patrepeval huggingface dataset:
Quantitative Percutaneous Absorption and Cutaneous Distribution of Binary Mixtures of Phenol and para-Nitrophenol in Isolated Perfused Porcine Skin (1996)

Chemical exposure to skin remains an important route by which systemic toxicity may occur. However, chemicals are seldom contacted singly in neat form and generally are present as a mixture. A total of 56 8-hr isolated perfused porcine skin flap (IPPSF) topical experiments were used to study the percutaneous absorption and cutaneous distribution of binary mixtures (solute/solvent) of 14C-labeled phenol vs p-nitrophenol (PNP) at two concentrations (4 μg/cm2 vs 40 μg/cm2) in two vehicles (acetone vs ethanol) under occluded vs nonoccluded dosing conditions. Pertinent comparisons were made to determine if dose, vehicle, or occlusion had a significant effect on absorption, localization of the test compounds, or total recoveries. Total recoveries were much greater in all cases for PNP than phenol. Absorption, penetration into tissues, and total recoveries of phenol were greater under occluded conditions than nonoccluded. Absorption and penetration of phenol into tissues were greater with ethanol than with acetone under nonoccluded conditions, but the opposite was observed under occluded conditions. Percentage of applied dose penetration into tissues was greater from low-dose phenol in acetone than high-dose, suggesting a fixed absorption rate. This was also seen for PNP, but only under occluded conditions. Neither phenol dose, vehicle, or occlusion had any significant effect on the labeled phenol seen in the stratum corneum or on time of peak flux, a finding which limits the usefulness of noninvasive stratum corneum sampling to assess topical penetration. There was greater absorption and penetration into tissues of PNP from acetone than from ethanol. PNP dose had a significant effect on time of peak dose, with low-dose PNP taking longer to reach its peak. Neither PNP dose, vehicle, nor occlusion had any significant effect on total recovery of labeled PNP. The results suggest that comparative absorption of phenol and PNP are vehicle-, occlusion-, and penetrant-dependent. These factors must be considered when comparing absorption data between studies. These findings suggest that single chemical data (the compound applied neat) is not predictive of even binary mixtureś and that exposure conditions further modulate disposition.
Cichorium intybus: Traditional Uses, Phytochemistry, Pharmacology, and Toxicology (2013)

The genus Cichorium (Asteraceae) is made up of six species with major geographical presence in Europe and Asia. Cichorium intybus, commonly known as chicory, is well known as a coffee substitute but is also widely used medicinally to treat various ailments ranging from wounds to diabetes. Although this plant has a rich history of use in folklore, many of its constituents have not been explored for their pharmacological potential. Toxicological data on C. intybus is currently limited. This review focuses on the economic and culturally important medicinal uses of C. intybus. Traditional uses, scientific validation, and phytochemical composition are discussed in detail.
Expanding the Cancer Arsenal with Targeted Therapies: Disarmament of the Antiapoptotic Bcl-2 Proteins by Small Molecules (2016)

A hallmark of cancer is the evasion of apoptosis, which is often associated with the upregulation of the antiapoptotic members of the Bcl-2 family of proteins. The prosurvival function of the antiapoptotic Bcl-2 proteins is manifested by capturing and neutralizing the proapoptotic Bcl-2 proteins via their BH3 death domains. Accordingly, strategies to antagonize the antiapoptotic Bcl-2 proteins have largely focused on the development of low-molecular-weight, synthetic BH3 mimetics ("magic bullets") to disrupt the protein-protein interactions between anti- and proapoptotic Bcl-2 proteins. In this way, apoptosis has been reactivated in malignant cells. Moreover, several such Bcl-2 family inhibitors are presently being evaluated for a range of cancers in clinical trials and show great promise as new additions to the cancer armamentarium. Indeed, the selective Bcl-2 inhibitor venetoclax (Venclexta) recently received FDA approval for the treatment of a specific subset of patients with chronic lymphocytic leukemia. This review focuses on the major developments in the field of Bcl-2 inhibitors over the past decade, with particular emphasis on binding modes and, thus, the origins of selectivity for specific Bcl-2 family members.
On the reliability and validity of manual muscle testing: a literature review (2007)

The MMT employed by chiropractors, physical therapists, and neurologists was shown to be a clinically useful tool, but its ultimate scientific validation and application requires testing that employs sophisticated research models in the areas of neurophysiology, biomechanics, RCTs, and statistical analysis.
The pH Dependent Nuclearity Variation of {Mo154-x}-type Polyoxomolybdates and Tectonic Effect on Their Aggregations (2008)

The pH dependence of the structures of {Mo(154-x)} mixed-valence oxomolybdate giant clusters were investigated by synchrotron X-ray diffraction of systematically prepared crystals containing [Mo138O410(OH)20(OH2)46](40-) (1), [Mo138O410(OH)20(OH2)38](40-) (2), [Mo138O406(OH)16(OH2)46](28-) (3), [Mo142O400(OH)52(OH2)38](28-) (4), [Mo142O432(OH2)58](40-) (5), [Mo148O436(OH)15(OH2)56](27-) (6), [Mo150O451(OH)5(OH2)61](35-) (7), and both [Mo150O442.5(OH)11.5(OH2)64](24.5-) and [Mo152O446(OH)20(OH2)54](28-) (8). Crystals 1, 4, and 5 contain discrete clusters while intercluster Mo-O-Mo bonds connect the clusters into chains in crystal 7, into two-dimensional networks in crystals 2 and 3, and into a three-dimensional framework structure in crystal 6. Crystal 8 contains both discrete and linearly catenated clusters: discrete {Mo150} are located between the chains of {Mo152}. Direct correlation was observed between the nuclearity of the clusters with the pH of the mother liquor. On the other hand, the geometries of extended structures do not show apparent correlation with the pH. They turned out to be governed by the tectonics of the component clusters. The pH of the mother liquor exerts influence on the extended structure through the structures of the constituent clusters.
Protein Delivery into Plant Cells: Toward In vivo Structural Biology (2017)

Understanding the biologically relevant structural and functional behavior of proteins inside living plant cells is only possible through the combination of structural biology and cell biology. The state-of-the-art structural biology techniques are typically applied to molecules that are isolated from their native context. Although most experimental conditions can be easily controlled while dealing with an isolated, purified protein, a serious shortcoming of such <i>in vitro</i> work is that we cannot mimic the extremely complex intracellular environment in which the protein exists and functions. Therefore, it is highly desirable to investigate proteins in their natural habitat, i.e., within live cells. This is the major ambition of <i>in-cell</i> NMR, which aims to approach structure-function relationship under true <i>in vivo</i> conditions following delivery of labeled proteins into cells under physiological conditions. With a multidisciplinary approach that includes recombinant protein production, confocal fluorescence microscopy, nuclear magnetic resonance (NMR) spectroscopy and different intracellular protein delivery strategies, we explore the possibility to develop <i>in-cell</i> NMR studies in living plant cells. While we provide a comprehensive framework to set-up <i>in-cell</i> NMR, we identified the efficient intracellular introduction of isotope-labeled proteins as the major bottleneck. Based on experiments with the paradigmatic intrinsically disordered proteins (IDPs) Early Response to Dehydration protein 10 and 14, we also established the subcellular localization of ERD14 under abiotic stress.
Importance of the galE gene on the virulence of Pasteurella multocida (2006)

The galE gene of Pasteurella multocida has been isolated by complementing galE-defective mutants of Salmonella typhimurium with a plasmid library of this organism. The complete nucleotide sequence of the P. multocida galE gene consists of 1017 nucleotides, encoding a predicted polypeptide of 339 amino acids. The deduced amino acid sequence displayed the highest identity (85%) to the GalE protein of Haemophilus influenzae. However, the gene organization surrounding the galE locus was different from that of H. influenzae. A galE-defective mutant of P. multocida was obtained by replacement of the active galE gene by a copy inactivated in vitro. The resulting galE mutant was highly attenuated as seen in a biological test carried out in a mouse model.
A method to convert mRNA into a gRNA library for CRISPR/Cas9 editing of any organism (2016)

The clustered regularly interspersed palindromic repeats (CRISPR)/Cas9 (CRISPR-associated protein 9) system is a powerful tool for genome editing that can be used to construct a guide RNA (gRNA) library for genetic screening. For gRNA design, one must know the sequence of the 20-mer flanking the protospacer adjacent motif (PAM), which seriously impedes experimentally making gRNA. I describe a method to construct a gRNA library via molecular biology techniques without relying on bioinformatics. Briefly, one synthesizes complementary DNA from the mRNA sequence using a semi-random primer containing a PAM complementary sequence and then cuts out the 20-mer adjacent to the PAM using type IIS and type III restriction enzymes to create a gRNA library. The described approach does not require prior knowledge about the target DNA sequences, making it applicable to any species.
Molecular epidemiology of Streptococcus pyogenes in an area where acute pharyngotonsillitis is endemic (1997)

During an open clinical trial in an area where streptococcal infections are hyperendemic, we studied the genetic polymorphism of Streptococcus pyogenes isolates collected from patients and from healthy carriers living in close contact with them. The clonal diversity of isolates was analyzed by pulsed-field gel electrophoresis with three restriction enzymes (SmaI, ApaI, and SacII). The pharynx of each patient and healthy carrier was colonized by a single clone, suggesting the clonal nature of streptococcal colonization in individuals. Among 52 isolates obtained from patients with acute pharyngotonsillitis, we found 14 genetically unrelated clones, showing the genetic diversity of S. pyogenes. However, two clones belonging to the M1 and M12 serotypes represented about 70% of isolates in carriers and patients. Pharyngeal colonization in cured patients was monitored for 3 to 4 months. After the initial elimination of S. pyogenes following antibiotic therapy, the rate of recolonization was high by day 30 (about 20%) and was also at that level between days 90 and 120; this was similar to the carriage rate in family contacts. Thus, cured patients can be recontaminated by unrelated clones, suggesting that colonization of healthy carriers might be a potential source of spread and redistribution of S. pyogenes isolates.
Diffraction-free beams (1987)

It was recently predicted that nondiffracting beams, with beam spots as small as a few wavelengths, can exist and propagate in free space. We report the first experimental investigation of these beams.
Classification of endothelin receptors and antagonists in clinical development (2002)

Conference Article| September 01 2002 Classification of endothelin receptors and antagonists in clinical development Anthony P. DAVENPORT; Anthony P. DAVENPORT *Clinical Pharmacology Unit, University of Cambridge, Level 6, Centre for Clinical Investigation, Box 110, Addenbrooke's Hospital, Cambridge CB2 2QQ, U.K. Dr A.P. Davenport (e-mail Apd10@medschl.cam.ac.uk) or Dr B. Battistini (e-mail Bruno.battistini@med.ulaval.ca). Search for other works by this author on: This Site PubMed Google Scholar Bruno BATTISTINI Bruno BATTISTINI †Hospital Laval, 2725 Chemin Ste-Foy, Ste-Foy, Quebec, Canada Dr A.P. Davenport (e-mail Apd10@medschl.cam.ac.uk) or Dr B. Battistini (e-mail Bruno.battistini@med.ulaval.ca). Search for other works by this author on: This Site PubMed Google Scholar Clin Sci (Lond) (2002) 103 (s2002): 1S–3S. https://doi.org/10.1042/CS103S001S Views Icon Views Article contents Figures & tables Video Audio Supplementary Data Peer Review Share Icon Share Facebook Twitter LinkedIn Email Cite Icon Cite Get Permissions Citation Anthony P. DAVENPORT, Bruno BATTISTINI; Classification of endothelin receptors and antagonists in clinical development. Clin Sci (Lond) 1 September 2002; 103 (s2002): 1S–3S. doi: https://doi.org/10.1042/CS103S001S Download citation file: Ris (Zotero) Reference Manager EasyBib Bookends Mendeley Papers EndNote RefWorks BibTex toolbar search Search Dropdown Menu toolbar search search input Search input auto suggest filter your search All ContentAll JournalsClinical Science Search Advanced Search Keywords: agonists, antagonists, endothelin, endothelin receptors © 2002 The Biochemical Society and the Medical Research Society2002 Article PDF first page preview Close Modal You do not currently have access to this content.
Nanoparticle conversion chemistry: Kirkendall effect, galvanic exchange, and anion exchange (2014)

Conversion chemistry is a rapidly maturing field, where chemical conversion of template nanoparticles (NPs) into new compositions is often accompanied by morphological changes, such as void formation. The principles and examples of three major classes of conversion chemical reactions are reviewed: the Kirkendall effect for metal NPs, galvanic exchange, and anion exchange, each of which can result in void formation in NPs. These reactions can be used to obtain complex structures that may not be attainable by other methods. During each kind of conversion chemical reaction, NPs undergo distinct chemical and morphological changes, and insights into the mechanisms of these reactions will allow for improved fine control and prediction of the structures of intermediates and products. Conversion of metal NPs into oxides, phosphides, sulphides, and selenides often occurs through the Kirkendall effect, where outward diffusion of metal atoms from the core is faster than inward diffusion of reactive species, resulting in void formation. In galvanic exchange reactions, metal NPs react with noble metal salts, where a redox reaction favours reduction and deposition of the noble metal (alloying) and oxidation and dissolution of the template metal (dealloying). In anion exchange reactions, addition of certain kinds of anions to solutions containing metal compound NPs drives anion exchange, which often results in significant morphological changes due to the large size of anions compared to cations. Conversion chemistry thus allows for the formation of NPs with complex compositions and structures, for which numerous applications are anticipated arising from their novel catalytic, electronic, optical, magnetic, and electrochemical properties.
Biocompatibility of bacterial magnetosomes: Acute toxicity, immunotoxicity and cytotoxicity (2010)

In this study, we examined the acute toxicity, immunotoxicity, and cytotoxicity of bacterial magnetosomes (BMs). LD(50) of BMs injected into the sublingual vein of SD rats was 62.7 mg/kg. Further studies with injection of 40 mg/kg BMs showed no significant difference between BM-treated and control rats in terms of routine blood exam results, liver and kidney function tests, organ coefficients of major organs, or Stimulation Index (SI) of lymph cells with ConA and/or LPS antigens. Histological examination of major organs from 40 mg/kg BM-treated rats showed no obvious pathological changes except for increased number of vacuoles in livers, and somewhat thicker interlobular septa in lungs. BMs showed little cytotoxic effect on H22, HL60, or EMT-6 cells. Growth of all three cells was neither inhibited nor stimulated by incubation with 9 microg/ml BMs, which also had no effect on DNA content, cell size, or cell membrane integrity.
Seed Germination and Vigor (2012)

Germination vigor is driven by the ability of the plant embryo, embedded within the seed, to resume its metabolic activity in a coordinated and sequential manner. Studies using "-omics" approaches support the finding that a main contributor of seed germination success is the quality of the messenger RNAs stored during embryo maturation on the mother plant. In addition, proteostasis and DNA integrity play a major role in the germination phenotype. Because of its pivotal role in cell metabolism and its close relationships with hormone signaling pathways regulating seed germination, the sulfur amino acid metabolism pathway represents a key biochemical determinant of the commitment of the seed to initiate its development toward germination. This review highlights that germination vigor depends on multiple biochemical and molecular variables. Their characterization is expected to deliver new markers of seed quality that can be used in breeding programs and/or in biotechnological approaches to improve crop yields.
An Interpolation Method by Predicting the Direction of Pixel Texture Changing Trend for H.264/AVC Intra Prediction (2008)

Intra prediction is employed by H.264/AVC in the pixel domain and plays a significant role in the improvement of the coding efficiency. By analyzing the H.264 intra prediction interpolation, we find that there are two problems exist: Firstly, the method does not make full use of the information because for most prediction modes, only 30% to 60% of reference pixels are used; secondly, the change of pixels in the same texture direction can not be reflected. It is on the assumption that all pixels are the same and simply copy the reference value. Focusing on the above problems, we propose a new intra prediction interpolation which uses the rest of the reference pixels to predict the direction of pixel texture changing trends. The experiments show that the new intra prediction interpolation method could achieve better rate-distortion performance with a little increase of computing complexity.
Occurrence of the human tumor-specific antigen structure Gal 1-3GalNAc - (Thomsen-Friedenreich) and related structures on gut bacteria: Prevalence, immunochemical analysis and structural confirmation (2011)

The Thomsen-Friedenreich antigen (TF; CD176, Galβ1-3GalNAcα-) is a tumor-specific carbohydrate antigen and a promising therapeutic target. Antibodies that react with this antigen are frequently found in the sera of healthy adults and are assumed to play a role in cancer immunosurveillance. In this study, we examined the occurrence of α-anomeric TF (TFα) on a large variety of gastrointestinal bacteria using a novel panel of well-characterized monoclonal antibodies. Reactivity with at least one anti-TF antibody was found in 13% (16 of 122) of strains analyzed. A more in-depth analysis, using monoclonal antibodies specific for α- and β-anomeric TF in combination with periodate oxidation, revealed that only two novel Bacteroides ovatus strains (D-6 and F-1), isolated from the faeces of healthy persons by TF-immunoaffinity enrichment, possessed structures that are immunochemically identical to the true TFα antigen. The TF-positive capsular polysaccharide structure of strain D-6 was characterized by mass spectrometry, monosaccharide composition analysis, glycosidase treatments and immunoblot staining with TFα- and TFβ-specific antibodies. The active antigen was identified as Galβ1-3GalNAc-, which was α-anomerically linked as a branching structure within a heptasaccharide repeating unit. We conclude that structures immunochemically identical to TFα are extremely rare on the surface of human intestinal bacteria and may only be identifiable by binding of both antibodies, NM-TF1 and NM-TF2, which recognize a complete immunomolecular imprint of the TFα structure. The two novel B. ovatus strains isolated in this study may provide a basis for the development of TF-based anti-tumor vaccines.
Regulation of Cytosolic Calcium in Plants (1993)

Cytosolic Ca2+ has been likened to a kind of cellular fire The metaphor is apt in an obvious way because it suggests that transient or localized elevations in cytosolic Ca2+-like a fire contained in a hearth-may be useful to plant cells for performing certain tasks, whereas uncontrolled or prolonged elevations in cytosolic Caz+-like a fire loose on the roof-are destructive of normal cellular processes. The metaphor is also apt in a less obvious way
Dual effects of fullerene doped to holographic polymer dispersed liquid crystals (2007)

Abstract Doping of conductive fullerene particles to the formulation of conventional holographic polymer dispersed liquid crystal‐induced dual effects of reducing both droplet coalescence and operating voltage. Fullerene induced an induction period which otherwise does not exist, followed by a gradual increase of diffraction efficiency to a saturation value being increased with increasing fullerene content. The increased diffraction efficiency was caused by the decreased droplet coalescence which was due to the hindered migration of LC by the fullerene particles. On the other hand, doped fullerene particles augmented the conductivity of polymer phase and hence the local electrical field imposed on LC droplet, which overcome the threshold for driving and reduced operating voltage and response times. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 5590–5596, 2007
Allergy to bovine β‐lactoglobulin: specificity of human IgE to tryptic peptides (1999)

Three peptides were identified as major epitopes, recognized by a large majority of human IgE antibodies. Numerous other epitopes are scattered all along the Blg sequence.
A phase II trial of imatinib mesylate in patients with biochemical relapse of prostate cancer after definitive local therapy (2006)

Based on the lack of PSA modulation and pronounced toxicities leading to early closure of this trial, further study of single-agent imatinib mesylate at this dose (400 mg twice daily) cannot be recommended in this patient population.