gebhart/patrepeval huggingface dataset:
Heterophile Hanganutziu-Deicher Antigen in Ganglioside Fractions of Human Melanoma Tissues (1988)

Gangliosides were purified from melanoma tissue extracts obtained from 5 patients. GM3 and GD3 were identified as the major components in ganglioside fractions of the melanoma tissues. Following thin-layer chromatography, enzyme immunostaining with Hanganutziu-Deicher (H-D) antigen-specific chicken antisera demonstrated the presence of NeuGc-neolactotetraosylceramide (H-D5) and NeuGc-lacto-N-norhexa-osylceramide (H-D7) in all 5 melanoma extracts.
Three-Way Catalyst Design for Urealess Passive Ammonia SCR: Lean-Burn SIDI Aftertreatment System (2011)

&lt;div class="section abstract"&gt;&lt;div class="htmlview paragraph"&gt;Lean-burn SIDI engine technology offers improved fuel economy; however, the reduction of NO&lt;sub&gt;x&lt;/sub&gt; during lean-operation continues to be a major technical hurdle in the implementation of energy efficient technology. There are several aftertreatment technologies, including the lean NO&lt;sub&gt;x&lt;/sub&gt; trap and active urea SCR, which have been widely considered, but they all suffer from high material cost and require customer intervention to fill the urea solution. Recently reported passive NH₃-SCR system - a simple, low-cost, and urea-free system - has the potential to enable the implementation of lean-burn gasoline engines.&lt;/div&gt;&lt;div class="htmlview paragraph"&gt;Key components in the passive NH₃-SCR aftertreatment system include a close-coupled TWC and underfloor SCR technology. NH₃ is formed on the TWC with short pulses of rich engine operation and the NH₃ is then stored on the underfloor SCR catalysts. On subsequent lean operations during the NEDC transient cycles, the NO&lt;sub&gt;x&lt;/sub&gt; that breaks through the TWC converter is reduced by stored NH₃ on the SCR catalysts. The design of the TWC is crucial for NH₃ generation and critical for HC/CO emission reduction due to the low exhaust temperatures. In summary, the passive NH₃ SCR has been demonstrated as an efficient and low cost lean NO&lt;sub&gt;x&lt;/sub&gt; aftertreatment technology for lean-burn SIDI. These and other results including steady-state results will be presented.&lt;/div&gt;&lt;/div&gt;
Long‐term outcomes from the English national comparative audit of surgery for nasal polyposis and chronic rhinosinusitis (2009)

We have shown sinonasal surgery to be safe and effective in reducing the symptoms associated with CRS over a 5-year period. The reduction in symptoms is large, with no significant decline in symptomatic improvement from 12 to 60 months postsurgery. However, revision surgery rates approach 20% over this time, and patients should be counseled accordingly prior to surgery.
Glioma Cells Transduced with an Escherichia coli CD/HSV-1 TK Fusion Gene Exhibit Enhanced Metabolic Suicide and Radiosensitivity (1997)

To ascertain whether concomitant expression of Escherichia coli deaminase (CD) and herpes simplex virus type-1 thymidine kinase (HSV-1 TK) could mediate greater levels of cytotoxicity beyond that observed with either suicide gene alone, 9L gliosarcoma cells were transduced with a retrovirus encoding a CD/HSV-1 TK fusion gene. The resultant CD/HSV-1 TK fusion protein (CDglyTK) was found to be bifunctional via CD and HSV-1 TK enzymatic assays, and conferred upon cells prodrug sensitivities equivalent to or better than that observed for each enzyme independently (ganciclovir [GCV] and bromovinyldeoxyuridine [BVdU] for HSV-1 TK and 5-fluorocytosine [5-FC] for CD). Simultaneous treatment of CDglyTK-expressing cells with prodrugs specific for HSV-1 TK and CD (GCV/5-FC or BVdU/5-FC) resulted in slight synergistic toxicity, two- to three-fold greater than that expected if the cytotoxic effects of each prodrug were purely additive. More importantly, co-treatment with HSV-1 TK- and CD-specific prodrugs was found to increase greatly the radiosensitivity of CDglyTK-expressing cells. Sensitivity enhancement ratios of 2.44 (GCV/5-FC) and 3.90 (BVdU/5-FC) were achieved. The results suggest that double suicide gene therapy, using a bifunctional CD/HSV-1 TK fusion gene, coupled with radiotherapy may provide a highly efficient means of selectively treating cancer.
Avian-to-human transmission of H9N2 subtype influenza A viruses: Relationship between H9N2 and H5N1 human isolates (2000)

In 1997, 18 cases of influenza in Hong Kong (bird flu) caused by a novel H5N1 (chicken) virus resulted in the deaths of six individuals and once again raised the specter of a potentially devastating influenza pandemic. Slaughter of the poultry in the live bird markets removed the source of infection and no further human cases of H5N1 infection have occurred. In March 1999, however, a new pandemic threat appeared when influenza A H9N2 viruses infected two children in Hong Kong. These two virus isolates are similar to an H9N2 virus isolated from a quail in Hong Kong in late 1997. Although differing in their surface hemagglutinin and neuraminidase components, a notable feature of these H9N2 viruses is that the six genes encoding the internal components of the virus are similar to those of the 1997 H5N1 human and avian isolates. This common feature emphasizes the apparent propensity of avian viruses with this genetic complement to infect humans and highlights the potential for the emergence of a novel human pathogen.
Protein interactions in the herpes simplex virus type 1 VP16-induced complex: VP16 peptide inhibition and mutational analysis of host cell factor requirements (1997)

The herpes simplex virus VP16 protein functions as a potent transcriptional activator and targets DNA sites with the consensus TAATGARAT present in all the viral immediate-early gene promoters. To do so, VP16 directs assembly of a multiprotein complex involving two cellular proteins, host cell factor (HCF) and the Oct-1 DNA-binding transcription factor. To investigate the importance of specific protein-protein interactions to formation of this VP16-induced complex (VIC), we used oligopeptides to prevent VIC assembly. Linear and cyclic peptides corresponding to a region of VP16 previously implicated in complex formation were potent inhibitors of VIC assembly. To further characterize the protein interactions involved, we cloned a human cDNA encoding the minimal VP16 interaction domain of HCF, containing amino acids 1 to 380 [HCF (1-380)]. The REHAYS-based peptides active in preventing VIC assembly were found to specifically block binding of VP16 to HCF (1-380), without affecting VP16-Oct-1 binding. The inhibitory activity of these VP16 peptides was strictly sequence specific for the EHAY residues. Site-directed mutagenesis of the HCF (1-380) domain revealed residues E102 and K105 to be critical determinants in support of VIC formation. Alteration of a single residue in HCF, K105, was shown to virtually abolish complex assembly. Interestingly however, none of the HCF mutants that were impaired in their ability to support complex formation exhibited defects in direct VP16 binding, supporting loss of function at a higher order in complex assembly.
A YAC contig map of the human genome. (1995)

A yeast artificial chromosome library containing 33,000 clones with an average insert size of one megabase of human genomic DNA was extensively analysed by several different procedures for detecting overlaps and positional information. We developed an analysis strategy that resulted, after confirmatory tests, in a YAC contig map reliably covering about 75% of the human genome in 225 contigs having an average size of about ten megabases.
A Monte-Carlo Simulation Package, Multiple Comparison Corrections and Power Estimation Incorporating Secondary Supportive Evidence (2007)

Various approaches have been proposed to account for the family-wise type-I errors in neuroimaging studies. This study introduces new global features as alternatives to address the multiple-comparison issue. These global features can serve as alternative brain indices whose type-I error theoretical calculations are unknown. A Monte-Carlo simulation package was used to calculate the family-wise type-I error of the newly introduced global features, as well as the conventional multiple comparison corrected p-values related to the height of the statistic (and cluster size) of interest in situations where random field theorem based p-values might be validated. In addition, this package was designed to perform statistical power analyses, taking multiple comparisons into consideration for the conventional statistics and the new global features. The behaviors of the global index type-I error thresholds as a function of the degrees of freedom (D) of t-distribution were investigated. Data from an oxygen-15 water PET study of right hand movement was used to illustrate the use of the global features and their type-I error and statistical power. With this PET example, we showed the superior statistical power of some global indices in cases where there were moderate changes over a relatively large brain volume. We believe that the global features and the calculation of type-I errors/statistical powers by the computer simulation package provide researchers alternative ways to account for multiple comparisons in neuroimaging studies.
Attractive Faces Are Only Average (1990)

Scientists and philosophers have searched for centuries for a parsimonious answer to the question of what constitutes beauty. We approached this problem from both an evolutionary and information-processing rationale and predicted that faces representing the average value of the population would be consistently judged as attractive. To evaluate this hypothesis, we digitized samples of male and female faces, mathematically averaged them, and had adults judge the attractiveness of both the individual faces and the computer-generated composite images. Both male (three samples) and female (three samples) composite faces were judged as more attractive than almost all the individual faces comprising the composites. A strong linear trend also revealed that the composite faces became more attractive as more faces were entered. These data showing that attractive faces are only average are consistent with evolutionary pressures that favor characteristics close to the mean of the population and with cognitive processes that favor prototypical category members.
Collagen/Annexin V Interactions Regulate Chondrocyte Mineralization (2008)

Physiological mineralization in growth plate cartilage is highly regulated and restricted to terminally differentiated chondrocytes. Because mineralization occurs in the extracellular matrix, we asked whether major extracellular matrix components (collagens) of growth plate cartilage are directly involved in regulating the mineralization process. Our findings show that types II and X collagen interacted with cell surface-expressed annexin V. These interactions led to a stimulation of annexin V-mediated Ca(2+) influx resulting in an increased intracellular Ca(2+) concentration, [Ca(2+)](i), and ultimately increased alkaline phosphatase activity and mineralization of growth plate chondrocytes. Consequently, stimulation of these interactions (ascorbate to stimulate collagen synthesis, culturing cells on type II collagen-coated dishes, or overexpression of full-length annexin V) resulted in increase of [Ca(2+)](i), alkaline phosphatase activity, and mineralization of growth plate chondrocytes, whereas inhibition of these interactions (3,4-dehydro-l-proline to inhibit collagen secretion, K-201, a specific annexin channel blocker, overexpression of N terminus-deleted mutant annexin V that does not bind to type II collagen and shows reduced Ca(2+) channel activities) decreased [Ca(2+)](i), alkaline phosphatase activity, and mineralization. In conclusion, the interactions between collagen and annexin V regulate mineralization of growth plate cartilage. Because annexin V is up-regulated during pathological mineralization events of articular cartilage, it is possible that these interactions also regulate pathological mineralization.
The Sa system: a novel antigen-antibody system specific for rheumatoid arthritis. (1994)

Anti-Sa antibodies are a novel serological marker highly specific for RA. Since anti-Sa antibodies occur independently of RF, they can be used as an additional diagnostic tool. The molecular nature of the Sa antigen as well as its potential pathogenic role in a significant proportion of patients with chronic articular inflammation of the rheumatoid variety merit further definition.
2-D periodic leaky-wave Antennas-part II: slot design (2005)

The far-field radiation patterns of a two-dimensional (2-D) periodic slot leaky-wave antenna (LWA) are studied. The antenna consists of a two-dimensional periodic array of slots in a conducting plane that is printed on top of a grounded dielectric slab. The antenna is excited by a simple source such as a dipole inside the slab. Reciprocity along with the spectral-domain method is used to calculate the far-field pattern, and the radiation characteristics of the structure are investigated. A comparison between the present periodic slot LWA and a 2-D periodic patch LWA discussed in Part I is given to show the advantages of the slot antenna for certain applications. The slot LWA can achieve high directivity patterns, and a circularly-polarized version of the antenna can achieve good circular-polarization at broadside.
Molecular profile of endothelial invasion of three-dimensional collagen matrices: insights into angiogenic sprout induction in wound healing (2008)

Sprouting angiogenesis is a multistep process consisting of basement membrane degradation, endothelial cell (EC) activation, proliferation, invasion, lumen formation, and sprout stabilization. Such complexity is consistent with a requirement for orchestration of individual gene expression alongside multiple signaling pathways. To better understand the mechanisms that direct the transformation of adherent ECs on the surface of collagen matrices to develop multicellular invading sprouts, we analyzed differential gene expression with time using a defined in vitro model of EC invasion driven by the combination of sphingosine-1-phosphate, basic FGF, and VEGF. Gene expression changes were confirmed by real-time PCR and Western blot analyses. A cohort of cell adhesion molecule genes involved in adherens junction and cell-extracellular matrix (ECM) interactions were upregulated, whereas a set of genes associated with tight junctions were downregulated. Numerous genes encoding ECM proteins and proteases were induced, indicating that biosynthesis and remodeling of ECM is indispensable for sprouting angiogenesis. Knockdown of a highly upregulated gene, a disintegrin and metalloproteinase with thrombospondin-type repeats-1 (ADAMTS1), decreased invasion responses, confirming a role for ADAMTS1 in mediating EC invasion. Furthermore, differential expression of multiple members of the Wnt and Notch pathways was observed. Functional experiments indicated that inhibition and activation of the Notch signaling pathway stimulated and inhibited EC invasion responses, respectively. This study has enhanced the molecular road map of gene expression changes that occur during endothelial invasion and highlighted the utility of three-dimensional models to study EC morphogenesis.
Monitoring of Galvanic Replacement Reaction between Silver Nanowires and HAuCl4 by In Situ Transmission X-ray Microscopy (2011)

Galvanic replacement reaction between silver nanowires and an aqueous solution of HAuCl(4) has been successfully monitored in real time by using in situ transmission X-ray microscopy (TXM) in combination with a flow cell reactor. The in situ observations clearly show the morphological evolution of the solid silver nanowires to hollow gold nanotubes in the course of the reaction. Careful analysis of the images reveals that the galvanic replacement reaction on the silver nanowires involves multiple steps: (i) local initiation of pitting process; (ii) anisotropic etching of the silver nanowires and uniform deposition of the resulting gold atoms on the surfaces of the nanowires; and (iii) reconstruction of the nanotube walls via an Ostwald ripening process. The in situ TXM represents a promising approach for studying dynamic processes involved in the growth and chemical transformation of nanomaterials in solutions, in particular for nanostructures with dimensions larger than 50 nm.
Diet and Sleep Patterns in Newborn Infants (1983)

Sleep behavior is modulated by serotonergic neurons within the brain, and the synthesis and release of serotonin by such neurons is thought to be influenced by the availability of tryptophan, the amino acid precursor of serotonin. We investigated the effects on the sleep patterns of newborn infants of variations in diet designed to affect tryptophan availability. Twenty healthy newborns (two to three days of age) were randomly assigned to receive a feeding consisting either of tryptophan in 10 per cent glucose or valine in 5 per cent glucose (valine competes with tryptophan for entry into the brain). Sleep patterns during the three hours after this feeding were compared with those after a feeding of routine formula (Similac). The infants fed tryptophan entered active sleep 14.1 minutes sooner than they did after Similac, and entered quiet sleep 20 minutes sooner. Those fed valine entered active sleep 15.8 minutes later than they did after Similac, and entered quiet sleep 39 minutes later. The differences between the tryptophan and valine groups were significant (P less than 0.01 for active sleep and P less than 0.005 for quiet sleep). We conclude that variations in the composition of the diet may influence sleep behavior in newborns.
Clonal Relationships and Extended Virulence Genotypes amongEscherichia coliIsolates from Women with a First or Recurrent Episode of Cystitis (2001)

To identify bacterial predictors of recurrence and/or persistence in acute cystitis, extended virulence genotypes were compared with clonal background and epidemiologic status among 74 Escherichia coli urine isolates from women with first or recurrent episodes of urinary tract infection (UTI). Sequential isolates from patients with recurrent UTI were classified, using macrorestriction analysis, as having caused an isolated recurrence versus a single or multiple same-strain recurrences. papA, papG allele II, iha, and iutA predicted multiple same-strain recurrences, whereas nfaE and the absence of sfaS or fyuA predicted isolated recurrences. Phylogenetic group B2 accounted for 70% of isolates and for most of the putative virulence factors (VFs) studied. The meningitis-associated O18:K1:H7 clonal group comprised 18% of isolates, exhibited multiple VFs, and caused "once-only" recurrences less commonly than did other strains. These findings identify specific VFs and clonal groups against which preventive interventions might be beneficial and illustrate the importance of delineating pathogenetically relevant subgroups within the "recurrent cystitis" population.
Synthesis and Characterization of Crystalline Ag 2 Se Nanowires Through a Template‐Engaged Reaction at Room Temperature (2002)

Single-crystalline Ag2Se nanowires have been successfully synthesized through a template-engaged topotactic reaction in which nanowires of trigonal selenium were transformed into Ag2Se by reacting with aqueous AgNO3 solutions at room temperature (RT). An interesting size-dependent transition between two crystal structures has also been observed for this newly synthesized one-dimensional system: The Ag2Se nanowires adopted a tetragonal structure when their diameters were less than ∼40 nm; an orthorhombic structure was found to be more favorable as the diameter of these nanowires was increased beyond 40 nm. Since this reaction can be carried out at ambient pressure and temperature, it should be straightforward to scale up the entire process for the high-volume production of Ag2Se nanowires with well-controlled sizes and crystal structures. These highly uniform nanowires of single-crystalline Ag2Se are potentially useful as photosensitizers, superionic conductors, magnetoresistive compounds, or thermoelectric materials. This work also represents the first demonstration of a template-engaged process capable of generating single-crystalline nanowires from the solution-phase and at RT.
Fixed- vs Adjusted-Dose Heparin in the Prophylaxis of Thromboembolism in Spinal Cord Injury (1988)

Thromboembolism is a common and occasionally catastrophic complication in patients with spinal cord injury and complete motor paralysis. We, therefore, evaluated the efficacy and safety of two prophylactic regimens, using heparin in either fixed doses of 5000 U given subcutaneously twice daily or in doses adjusted to prolong the activated partial thromboplastin time (APTT) to approximately 1 1/2 times control. Patients were monitored with daily clinical examinations, serial impedance plethysmography, and Doppler flow studies. All events suspected to be thromboembolic were confirmed by venography, ventilation-perfusion scans, or pulmonary angiography. Seventy-five patients were randomized, and 58 (29 in each group) either remained in the study for more than seven weeks or experienced a thrombotic or hemorrhagic event. Patients on the adjusted-dose regimen received a mean (+/- SD) of 13,200 +/- 2200 U of heparin per dose and had an APTT 1 1/2 times higher than those on the fixed-dose regimen. Thromboembolism was detected in nine (31%) of 29 patients randomized to the fixed-dose regimen and two (7%) of 29 on the adjusted-dose regimen. While no patient who received the adjusted dose and whose APTT reached the target level had a thrombosis, bleeding occurred in seven patients. No patient on the fixed-dose regimen bled. We conclude that patients with spinal cord injury who can be maintained on doses of heparin sufficient to prolong their APTT to 1 1/2 times control values will be spared thromboembolic complications, but these patients are at high risk of bleeding, especially if they have trauma to other tissues in addition to their spinal cord injury.
Self-Assembly of Subnanometer-Diameter Single-Wall MoS 2 Nanotubes (2001)

We report on the synthesis, structure, and self-assembly of single-wall subnanometer-diameter molybdenum disulfide tubes. The nanotubes are up to hundreds of micrometers long and display diverse self-assembly properties on different length scales, ranging from twisted bundles to regularly shaped "furry" forms. The bundles, which contain interstitial iodine, can be readily disassembled into individual molybdenum disulfide nanotubes. The synthesis was performed using a novel type of catalyzed transport reaction including C(60) as a growth promoter.
Radiation dosimetry for 90Y-2IT-BAD-Lym-1 extrapolated from pharmacokinetics using 111In-2IT-BAD-Lym-1 in patients with non-Hodgkin's lymphoma. (2000)

Because of the long residence time of 111In-2IT-BAD-Lym-1 in tumors, high 90Y therapeutic ratios (tumor-to-tissue radiation dose) were achieved for some tissues, but the liver also showed high uptake and retention of the radiometal.