gebhart/patrepeval huggingface dataset:
A Calcium-Dependent Protein Kinase with a Regulatory Domain Similar to Calmodulin (1991)

Calcium can function as a second messenger through stimulation of calcium-dependent protein kinases. A protein kinase that requires calcium but not calmodulin or phospholipids for activity has been purified from soybean. The kinase itself binds calcium with high affinity. A complementary DNA clone for this kinase has been identified; it encodes a protein with a predicted molecular mass of 57,175 daltons. This protein contains a catalytic domain similar to that of calmodulin-dependent kinases and a calmodulin-like region with four calcium binding domains (EF hands). The predicted structure of this kinase explains its direct regulation via calcium binding and establishes it as a prototype for a new family of calcium-regulated protein kinases.
Genetic Control of Melatonin Synthesis in the Pineal Gland of the Mouse (1986)

Pineal melatonin may play an important role in regulation of vertebrate circadian rhythms and in human affective disorders. In some mammals, such as hamsters and sheep, melatonin is involved in photoperiodic time measurement and in control of reproduction. Although wild mice (Mus domesticus) and some wild-derived inbred strains of mice have melatonin in their pineal glands, several inbred strains of laboratory mice (for example, C57BL/6J) were found not to have detectable melatonin in their pineal glands. Genetic analysis suggests that melatonin deficiency in C57BL/6J mice results from mutations in two independently segregating, autosomal recessive genes. Synthesis of melatonin from serotonin in the pineal gland requires the enzymes N-acetyltransferase (NAT) and hydroxyindole-O-methyltransferase (HIOMT). Pineal glands from C57BL/6J mice have neither NAT nor HIOMT activity. These results suggest that the two genes involved in melatonin deficiency are responsible for the absence of normal NAT and HIOMT enzyme activity.
Immunity to cartilage link protein in patients with juvenile rheumatoid arthritis. (1997)

These results suggest that immunity to link protein may play a role in the pathogenesis of JRA.
A comparison between spline-based and phase-domain time-delay estimators (2006)

We previously presented a novel time-delay estimator that uses cubic splines to estimate continuous time delays from sampled data. Previous simulation results showed that the spline-based algorithm yields superior performance when compared to the normalized correlation and the sum squared differences (SSD) algorithms implementing a variety of subsample interpolators. In this short communication, we present additional simulation results that compare the spline-based time-delay estimator to well-known phase-domain estimators. Under comparable conditions, spline-based methods exhibit biases approximately one tenth and standard deviation only one hundredth of those observed for the phase-based approaches
Fiber-Wireless-Fiber Link for 100-Gb/s PDM-QPSK Signal Transmission at W-Band (2014)

We propose and experimentally demonstrate a W-band seamlessly-integrated fiber-wireless-fiber system enabled by photonic millimeter-wave generation and demodulation techniques, in which up to 109.6-Gb/s polarization division multiplexing quadrature phase shift keying signal can be first transmitted over 80-km single-mode fiber-28 (SMF-28), then delivered over a 2-m 2 × 2 multiple-input multiple-output wireless link at 95 GHz and finally transmitted over another 80-km SMF-28 with a bit-error ratio less than the third-generation forward-error-correction limitation of 2 × 10 <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">2</sup> . The proposed fiber-wireless-fiber integration system has throughput comparable with that of fiber-optic communication and is suited to emergency back-up communications.
Long-term effects of orthodontic magnets on human buccal mucosa - a clinical, histological and immunohistochemical study (1998)

The aim of this intra-individual study was to examine human buccal mucosa clinically, histologically and immunohistochemically after 9 months' exposure to orthodontic magnets. In each of eight subjects (17.8-42.4 years), a magnet and a demagnetized equivalent of parylene coated neodymium-iron-boron was bonded alternately on the left and right side, to the buccal surface of maxillary premolars. The buccal mucosa was clinically examined and photographed, and three punch biopsies (6 mm diameter) of the buccal mucosa were taken from each subject at the site of contact with the magnet (test), in contact with the demagnetized magnet (control), and also at a site on the control side without contact with the demagnetized magnet (normal). The biopsies were snap-frozen for histological and immunohistochemical investigation, using antibodies to PD7 (lymphocyte 'naive T'), UCHL 1 ('memory T'), HLADR, ELAM-1 and ICAM-1. Clinically, the buccal mucosa showed normal features before and after the experimental period. In four of the eight subjects, the epithelium was 1.4-2.3 times thicker in the control and test tissues than in normal tissues. The difference between controls and tests was negligible, and there were no signs of increased keratinization or other surface abnormalities. Compared with normal sites, all control and test sites showed slightly increased ELAM-1/ ICAM-1 vascular staining, accompanied in three subjects by small infiltrates of PD7/UCHL 1-positive lymphocytic cells and in all subjects by focal keratinocyte HLADR-staining. The minor tissue reactions found in test and control tissues were interpreted to be a result of microtrauma (contact irritation) and not caused by the static magnetic field per se, since there was no difference between test and control tissues.
Mutations at the GABA receptor selectivity filter: a possible role for effective charges (2003)

An important feature of ligand-gated ion channels is their exquisite ability to discriminate between ions. Still, little is known about the mechanisms underlying, or structural determinates of, this ability. We examined the structural elements underlying the ionic selectivity of rho1 GABA receptors expressed in Xenopus oocytes and human embryonic kidney cells using site-directed mutagenesis and two-electrode voltage-clamp or patch-clamp techniques. The wild-type GABA receptor was chloride selective, with a small but significant permeability to potassium (PNa+ : PK+ : PCl- = 0 : 0.03 :1). Mutation of an alanine to glutamate at position 291 (thought to be located at the intracellular end of the second transmembrane domain), formed a channel that exhibited little discrimination among ions (0.70:0.87:1), while deletion of a neighbouring proline (290) was chloride selective, but had elevated cation permeabilities compared to the wild-type channel (0.12 : 0.14 : 1). Together, the two mutations (DeltaP290/A291E) caused a reversal of selectivity (2.72 : 3.59 : 1). We also examined the effects of neutralizing and reversing the charge of the adjacent, and highly conserved, arginine. Mutation of the neighbouring arginine to glutamate (R292E) increased the cation permeability similar to the DeltaP290/A291E double mutant (2.4 : 3.0 : 1), whereas neutral mutations at this position (R292M or R292C) retained chloride selectivity (0 : 0.11 : 1.0 and 0 : 0.14 : 1.0, respectively). Our experiments suggest that the effective charge near the presumed intracellular mouth of the pore is critical for ionic selectivity.
<title>Scaling laws of microactuators and potential applications of electroactive polymers in MEMS</title> (1999)

Besides the scale factor that distinguishes the various spices fundamentally biological muscles changes little between species indicating a highly optimized system, Electroactive polymer actuators offer the closest resemblance to biological muscles however beside the large actuation displacement these materials are falling short with regards to the actuation force. As improved materials emerging it is becoming necessary to address key issues such as the need for effective electromechanical modeling and guiding parameters in scaling the actuators. In this paper, we will review the scaling laws for three major actuation mechanisms that are of relevance to micro electromechanical systems: electrostatic actuation, magnetic actuation, thermal bimetallic actuation, and piezoelectric actuation.
Correlation of accelerometer and microphone data in the "coin tap test" (2000)

In the "coin tap test," an operator taps with a coin-like light tool on the structure to be inspected, feeling the subtle difference of impact force and hearing the resulting sound to discriminate defective regions from normal ones. The test remains largely subjective, and there has been considerable uncertainty about the physical principles behind it. Analyzing and comparing the force measured by an accelerometer in the hammer and the resulting sound recorded with a microphone, this paper seeks an understanding of the fundamental principles underlying the individual measurement techniques. It gives a paradigm for sensor fusion via using the data from one modality to select the optimal time window for signal analysis of another modality.
Mutational and protein analysis of patients and heterozygous women with X-linked adrenoleukodystrophy. (1996)

X-linked adrenoleukodystrophy (ALD), a neurodegenerative disorder associated with impaired beta-oxidation of very-long-chain fatty acids (VLCFA), is due to mutations in a gene encoding a peroxisomal ATP-binding cassette (ABC) transporter (ALD protein [ALDP]). We analyzed the open reading frame of the ALD gene in 44 French ALD kindred by using SSCP or denaturing gradient-gel electrophoresis and studied the effect of mutations on ALDP by immunocytofluorescence and western blotting of fibroblasts and/or white blood cells. Mutations were detected in 37 of 44 kindreds and were distributed over the whole protein-coding region, with the exception of the C terminus encoded in exon 10. Except for two mutations (delAG1801 and P560L) observed four times each, nearly every ALD family has a different mutation. Twenty-four of 37 mutations were missense mutations leading to amino acid changes located in or close to putative transmembrane segments (TMS 2, 3, 4, and 5), in the EAA-like motif and in the nucleotide fold of the ATP-binding domain of ALDP. Of 38 ALD patients tested, 27 (71%) lacked ALDP immunoreactivity in their fibroblasts and/or white blood cells. More than half of missense mutations studied (11 of 21) resulted in a complete lack of ALDP immunoreactivity, and six missense mutations resulted in decreased ALDP expression. The fibroblasts and/or white blood cells of 15 of 15 heterozygous carrier from ALD kindred with no ALDP showed a mixture of positive- and negative-ALDP immunoreactivity due to X-inactivation. Since 5%-15% of heterozygous women have normal VLCFA levels, the immunodetection of ALDP in white blood cells can be applicable in a majority of ALD kindred, to identify heterozygous women, particularly when the ALD gene mutation has not yet been identified.
Advanced Glycosylation End Products in Tissue and the Biochemical Basis of Diabetic Complications (1988)

IN this seminar we review recent studies suggesting that the central pathologic features of diabetic complications are caused by the hyperglycemia-accelerated formation of nonenzymatic advanced glycosylation end products in tissue. We will emphasize new research findings with important clinical implications, since older information is available in previously published reviews.1 , 2 Other biochemical mechanisms by which hyperglycemia may contribute to the development of diabetic complications are not discussed here, since they are comprehensively reviewed elsewhere.3 4 5 6 7 8 Differences between Early and Advanced Glycosylation ProductsThe central pathophysiologic features of diabetic vascular complications are an abnormal leakage of proteins from the circulation and a progressive . . .
Realtime ray tracing on current CPU architectures (2006)

In computer graphics, ray tracing has become a powerful tool for generating realistically looking images. Even though ray tracing offers high flexibility, a logarithmic scalability in scene complexity, and is known to be efficiently parallelizable, its demand for compute power has in the past lead to its limitation to high-quality off-line rendering. This thesis focuses on the question of how realtime ray tracing can be realized on current processor architectures. To this end, it provides a detailed analysis of the weaknesses and strengths of current processor architectures, for the purpose of allowing for highly optimized implementation. The combination of processor-specific optimizations with algorithms that exploit the coherence of ray tracing, makes it possible to achieve realtime performance on a single CPU. Besides the optimization of the ray tracing algorithm itself, this thesis focuses on the efficient building of spatial index structures. By building these structures from scratch for every frame, interactive ray tracing of fully dynamic scenes becomes possible. Moreover, a parallelization framework for ray tracing is discussed that efficiently exploits the compute power of a cluster of commodity PCs. Finally, a global illumination algorithm is proposed that efficiently combines optimized ray tracing and the parallelization framework. The combination makes it possible to compute complete global illumination at interactive frame rates.
Lipoprotein lipase-mediated uptake and degradation of low density lipoproteins by fibroblasts and macrophages. (1992)

Lipoprotein lipase (LPL), the rate limiting enzyme for hydrolysis of lipoprotein triglyceride, also mediates nonenzymatic interactions between lipoproteins and heparan sulfate proteoglycans. To determine whether cell surface LPL increases LDL binding to cells, bovine milk LPL was added to upregulated and nonupregulated human fibroblasts along with media containing LDL. LDL binding to cells was increased 2-10-fold, in a dose-dependent manner, by the addition of 0.5-10 micrograms/ml of LPL. The amount of LDL bound to the cells in the presence of LPL far exceeded the capacity for LDL binding via the LDL receptor. Treatment of fibroblasts with heparinase and heparitinase resulted in a 64% decrease in LPL-mediated LDL binding. Compared to studies performed without LPL, more LDL was internalized and degraded in the presence of LPL, but the time course was slower than that of classical lipoprotein receptor mediated pathways. In LDL receptor negative fibroblasts, LPL increased surface bound LDL > 140-fold, intracellular LDL > 40-fold, and LDL degradation > 6-fold. These effects were almost completely inhibited by heparin and anti-LPL monoclonal antibody. LPL also increased the binding and uptake by fibroblasts of apolipoprotein-free triglyceride emulsions; binding was increased > 8-fold and cellular uptake was increased > 40-fold with LPL. LPL increased LDL binding to THP-1 monocytes, and increased LDL uptake (4.5-fold) and LDL degradation (2.5-fold) by THP-1 macrophages. In the absence of added LPL, heparin and anti-LPL monoclonal antibodies decreased LDL degradation by > 40%, and triglyceride emulsion uptake by > 50%, suggesting that endogenously produced LPL mediated lipid particle uptake and degradation. We conclude that LPL increases lipid and lipoprotein uptake by cells via a pathway not involving the LDL receptor. This pathway may be important for lipid accumulation in LPL synthesizing cells.
IL-13 and IL-4 Up-Regulate Cysteinyl Leukotriene 1 Receptor Expression in Human Monocytes and Macrophages (2001)

The cysteinyl (Cys) leukotrienes (LT)C(4), LTD(4), and LTE(4), are lipid mediators that have been implicated in the pathogenesis of asthma. The human LTD(4) receptor (CysLT(1)R) was recently cloned and characterized. The present work was undertaken to study the potential modulation of CysLT(1)R expression by the Th2 cytokines IL-13 and IL-4. In this study, we report that IL-13 up-regulates CysLT(1)R mRNA levels, with consequently enhanced CysLT(1)R protein expression and function in human monocytes and monocyte-derived macrophages. CysLT(1)R mRNA expression was augmented 2- to 5-fold following treatment with IL-13 and was due to enhanced transcriptional activity. The effect was observed after 4 h, was maximal by 8 h, and maintained at 24 h. IL-4, but not IFN-gamma, induced a similar pattern of CysLT(1)R up-regulation. Monocytes pretreated with IL-13 or IL-4 for 24 h showed enhanced CysLT(1)R protein expression, as assessed by flow cytometry using a polyclonal anti-CysLT(1)R Ab. They also showed enhanced responsiveness to LTD(4), but not to LTB(4), in terms of Ca(2+) mobilization, as well as augmented chemotactic activity. Our findings suggest a possible mechanism by which IL-13 and IL-4 can modulate CysLT(1)R expression on monocytes and macrophages, and consequently their responsiveness to LTD(4), and thus contribute to the pathogenesis of asthma and allergic diseases.
NMR analysis of the N-terminal SRCR domain of human CD5: engineering of a glycoprotein for superior characteristics in NMR experiments (1998)

CD5 is a type-I transmembrane glycoprotein found on thymocytes, T-cells and a subset of B-cells. The extracellular region consists of three domains belonging to the scavenger receptor cysteine-rich (SRCR) superfamily for which the three-dimensional polypeptide fold is as yet unknown. Glycosylated CD5 domain 1 (CD5d1) has been obtained by expression by secretion from both Chinese hamster ovary (CHO) cells and Pichia pastoris. Recombinant CD5d1 expressed in this manner was shown to be correctly folded by binding to anti-CD5 L17F12/Leu1 monoclonal antibody. Preliminary nuclear magnetic resonance (NMR) spectra obtained for CD5d1 (residues 1-118) had spectral dispersion typical of a folded protein, but otherwise of such poor quality that NMR structural studies were not feasible. The analysis of glycoproteins by NMR is frustrated by sample heterogeneity and poor spectral quality associated with glycan resonance overlap and the potential for increased line-widths due to the large hydrodynamic volume. In order to pursue NMR structural studies of CD5d1 it was necessary to optimize the quality of NMR spectra of CD5d1. A range of constructs of varying length and carbohydrate content were expressed in CHO cells and in P. pastoris. In addition the P. pastoris CD5d1 proved susceptible to N-glycan cleavage with endoglycosidase H. The protein products were characterised using size exclusion chromatography, NMR measurement of translational self-diffusion coefficients and two-dimensional 1H nuclear Overhauser effect spectroscopy experiments. Removal of an eight residue O-glycosylated C-terminal peptide, in particular, resulted in significant improvements in the quality of the CD5d1 NMR data, while retaining native protein structure. Two-dimensional heteronuclear NMR spectroscopy of nitrogen-15 isotope labelled deglycosylated CD5d1 (residues 1-110) prepared from P. pastoris suggests that this protein product is now amenable to solution structure determination.
The X-Ray Transform Projection of 3D Mother Wavelet Function (2013)

As we all know, any practical computed tomography (CT) projection data more or less contains noises. Hence, it will be inconvenient for the postprocessing of a reconstructed 3D image even when the noise in the projection data is white. The reason is that the noise in the reconstructed image may be nonwhite. X-ray transform can be applied to the three dimensional (3D) CT, depicting the relationship between material density and ray projection. In this paper, nontensor product relationship between the two dimensional (2D) mother wavelet and 3D mother wavelet is obtained by taking X-ray transform projection of 3D mother wavelet. We proved that the projection of the 3D mother wavelet is a 2D mother wavelet if the 3D mother wavelet satisfies certain conditions. So, the 3D wavelet transform of a 3D image can be implemented by the 2D wavelet transform of its X-ray transform projection and it will contribute to the reduction complexity and computation time during image processing. What is more, it can also avoid noise transfer and amplification during the processing of CT image reconstruction.
The synthetic analogs of O2-binding heme proteins (1985)

ADVERTISEMENT RETURN TO ISSUEPREVReportNEXTThe synthetic analogs of O2-binding heme proteinsKenneth S. Suslick and Thomas J. Reinert Cite this: J. Chem. Educ. 1985, 62, 11, 974Publication Date (Print):November 1, 1985Publication History Received3 August 2009Published online1 November 1985Published inissue 1 November 1985https://doi.org/10.1021/ed062p974RIGHTS & PERMISSIONSArticle Views1245Altmetric-Citations68LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (7 MB) Get e-Alerts Get e-Alerts
27 Hersenstamsyndromen (2004)

De hersenstam vormt een rostrale voortzetting van het ruggenmerg en wordt gekenmerkt door een grote dichtheid aan vitale structuren. Binnen de beperkte ruimte van de hersenstam bevinden zich de kernen en de uittredende en intredende zenuwvezels van d
Pilot Treatment of OCC-based Paper Mill Wastewater Using Pulsed Electrocoagulation (2007)

Abstract There is an increasing trend towards the closure of white water recirculation loops in papermaking, often leading to need for system modification. A pilot-scale study was conducted using pulsed electrocoagulation technology to treat the wastewater of an old corrugated containerboard (OCC)-based paper mill, to evaluate its treatment performance. The operating variables were: a current density of 0 to 240 A/m2, a hydraulic retention time of 8 to 16 min and a coagulant (anionic polyacrylamide) dosage of 0 to 30 mg/L. The water quality indicators investigated were electrical conductivity, suspended solids (SS) and chemical oxygen demand (COD). The results obtained during the pilot-scale studies were favourable. Under the operating conditions without coagulant addition, the highest removals for conductivity, SS and COD were 47.7%, 99.3% and 75%, respectively. The use of coagulant remarkably enhanced the removal of both conductivity and COD. Using a coagulant dosage of 30 mg/L, the highest removal rates achieved for the three water quality indicators were 54.5%, 99.6% and 92.7%, respectively. These water quality levels are adequate to allow for the reuse of at least a part of the treated wastewater as makeup process water in papermaking.