gebhart/patrepeval huggingface dataset:
Albumin is encoded by 2 messenger RNAs in Xenopus laevis (1981)

A cDNA clone library was prepared from liver poly(A) RNA pf non-estrogenized Xenopus laevis. Albumin coding sequences were screened by hybridization to a cDNA prepared from poly(A) RNA enriched by sucrose density gradient centrifugation, and by a sensitive solid-phase radioimmunoassay to detect clones that contain templates for albumin antigenic determinants. Nine clones were obtained by this approach, and all but one have the cDNA inserted in phase with the beta-lactamase gene of pBR322. Mapping of these clones with restriction endonucleases yielded 2 distinct patterns, suggestive of heterogeneity in the coding sequences. This was confirmed by heteroduplex analyses of hybrids formed between clones representative of each of the 2 classes. Both classes of albumin cDNA clones were used to select mRNAs of the same size (2.3kb) that code for peptides that are indistinguishable by SDS gel electrophoresis. Examination of the organization of the albumin genes by blot hybridization of the cDNA clones to restriction fragments of Xenopus DNA failed to detect any differences at the genomic level. The considerable diversity of the albumin cDNAs is suggestive of a multiplicity of albumin genes, rather than differential processing of a common precursor RNA.
Analysis of Bonding‐Related Gas Enclosure in Micromachined Cavities Sealed by Silicon Wafer Bonding (1997)

We investigated the bonding‐related gases trapped inside the cavities of micromachined silicon test structures that had been sealed by silicon direct bonding or anodic bonding under vacuum conditions. The gas content inside the cavities was analyzed by quadruple mass spectroscopy. The magnitude of the residual gas pressure inside the cavities for different cavity layouts and for various bonding processes was monitored. In cavities bonded by low‐temperature silicon direct bonding the residual gases are reaction products originating from the mating silicon surfaces during annealing. Inside the cavities mainly , and are found. The total gas pressure is primarily determined by the component. Cavities sealed by anodic bonding mainly contain which originates from mobile oxygen ions inside the bonding glass. The residual gas pressure inside anodically bonded cavities depends neither on the applied bonding voltage nor on the bonding area surrounding each cavity.
Gefitinib-Induced Killing of NSCLC Cell Lines Expressing Mutant EGFR Requires BIM and Can Be Enhanced by BH3 Mimetics (2007)

Inhibitors of the EGFR tyrosine kinase have proven useful in the therapy of certain cancers, in particular NSCLCs possessing activating mutations in the EGFR kinase domain, but the mechanisms of tumor cell killing are still unclear. In this paper, we demonstrate that activation of the proapoptotic BH3-only protein BIM is essential for tumor cell killing and that shutdown of the EGFR-MEK-ERK signaling cascade is critical for BIM activation. Moreover, we demonstrate that addition of a BH3 mimetic significantly enhances killing of NSCLC cells by the EGFR tyrosine kinase inhibitor gefitinib. It appears likely that this approach represents a paradigm shared by many, and perhaps all, oncogenic tyrosine kinases and suggests a powerful new strategy for cancer therapy.
Human mastoid periosteum-derived stem cells: promising candidates for skeletal tissue engineering (2008)

Currently, mesenchymal stem cells (MSCs) are considered as the most eligible cells for skeletal tissue engineering. However, factors such as difficult stimulation and control of differentiation in vivo hamper their clinical use. In contrast, periosteum or periosteum-derived cells (PCs) are routinely clinically applied for bone and cartilage repair. PCs have often been named MSCs but, although cells of osteochondrogenic lineages arise from MSCs, it is unclear whether periosteum really contains MSCs. Our aim was to investigate the MSC-like character of PCs derived from the periosteum of mastoid bone. Harvesting of periosteum from mastoid bone is easy, so mastoid represents a good source for the isolation of PCs. Therefore, we analysed the MSC-like growth behaviour and the expression of embryonic, ectodermal, endodermal and mesodermal markers by microarray and FACS technology, and the multilineage developmental capacity of human PCs. Regarding clinical relevance, experiments were performed in human serum-supplemented medium. We show that PCs do not express early embryonic stem cell markers such as Oct4 and Nanog, or the marker of haematopoietic stem cells CD34, but express some other MSC markers. Osteogenesis resulted in the formation of calcified matrix, increased alkaline phosphatase activity, and induction of the osteogenic marker gene osteocalcin. Staining of proteoglycans and deposition of type II collagen documented chondrogenic development. As shown for the first time, adipogenic stimulation of mastoid-derived PCs resulted in the formation of lipid droplets and expression of the adipogenic marker genes aP2 and APM1. These results suggest MSC-like PCs from mastoid as candidates for therapy of complex skeletal defects.
Short overview on the current treatment of chronic myeloid leukemia in chronic phase (2016)

This short review on current treatment options in chronic myeloid leukemia (CML) in the chronic phase summarizes the latest version of the ELN treatment recommendations dating from 2013 and indicates treatment situations not yet reflected in these recommendations. Daily practice in CML management is complicated by the recently observed treatment-emergent vascular and pulmonary adverse events in second- or later-generation tyrosine kinase inhibitors (TKIs), the lack of guidance with respect to the best TKI for initial treatment, as well as the optimal TKI sequence because no prospective randomized comparative data for second- and third-generation TKIs are available. Physicians have to balance the efficacy issues and safety aspects of the respective TKI and consider patient-specific factors such as comorbidities. Patients with any cardiovascular or pulmonary disease or treatment-requiring cardiovascular risk factor should receive nilotinib or ponatinib only if risk factors and comorbidities are treated accordingly and are further monitored. If these comorbidities are insufficiently controlled, other TKIs might be preferred. Dasatinib treatment should be critically evaluated in patients with pulmonary disease and other TKIs might be preferred in this setting. For as long as CML treatment is considered to be maintained lifelong, and no survival benefit for later-generation TKIs has been demonstrated, safety issues dominate the choice of treatment options. The concept of discontinuing TKI treatment after achieving a deep molecular response might in future change these considerations.
Circulating Tumor Cells as Biomarkers in Prostate Cancer (2011)

Unmet needs in prostate cancer drug development and patient management are the ability to monitor treatment effects and to identify therapeutic targets in a tumor at the time treatment is being considered. This review focuses on establishing analytically valid biomarkers for specific contexts of use in patients with castration-resistant prostate cancer (CRPC), emphasizing a biomarker currently in clinical use, circulating tumor cells (CTC). The FDA Critical Path provides a road map for these investigations, which, if followed, will facilitate the incorporation of these types of assays into clinical decision-making. CTC enumeration at baseline and post-treatment is prognostic of survival, with no threshold effect, and the shedding of cells into the circulation represents an intrinsic property of the tumor, distinct from extent of disease. The clinical utility of monitoring CTC changes with treatment, as an efficacy-response surrogate biomarker of survival, is currently being tested in large phase III trials, with the novel antiandrogen therapies abiraterone acetate and MDV3100. Molecular determinants can be identified and characterized in CTCs as potential predictive biomarkers of tumor sensitivity to a therapeutic modality. Additionally, we discuss novel technologies to enrich and characterize CTCs from more patients, the potential clinical uses of CTCs in determining prognosis and monitoring treatment effects, and CTCs as a source of tissue to identify predictive markers of drug sensitivity to guide treatment selection. Prospective studies, designed around the biomarker itself and the specific clinical context for which it is applied, are needed to further assess the role of these and novel markers in clinical practice.
Efficient in-droplet separation of magnetic particles for digital microfluidics (2007)

This paper describes a new efficient in-droplet magnetic particle concentration and separation method, where magnetic particles are concentrated and separated into a split droplet by using a permanent magnet and EWOD (electrowetting on dielectric) droplet manipulation. To evaluate the method, testing devices are fabricated by the micro fabrication technology. First, this method is examined for magnetic particle concentration, showing that over 91% of magnetic particles can be concentrated into a split daughter droplet. Then, separation between magnetic and non-magnetic particles is examined for two different cases of particle mixture, showing in both cases that over 91% of the magnetic particles can be concentrated into split daughter droplets. However, a significant number of the non-magnetic particles (over 35%) co-exist with the magnetic particles in the same daughter droplets. This problem is circumvented by adding a droplet-merging step prior to applying the magnetic field. Finally, over 94% of the total magnetic particles are separated into a one split daughter droplet while 92% of the non-magnetic particles into the other split daughter droplet. This integrated in-droplet separation method may bridge many existing magnetic particle assays to digital microfluidics and extend their application scope.
Curariform Activity and Chemical Structure. VII. Some 1-Skatylisoquinoline Derivatives and a Novel Method for their Synthesis1,2 (1950)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTCurariform Activity and Chemical Structure. VII. Some 1-Skatylisoquinoline Derivatives and a Novel Method for their Synthesis1,2V. Boekelheide and C. AinsworthCite this: J. Am. Chem. Soc. 1950, 72, 5, 2134–2137Publication Date (Print):May 1, 1950Publication History Published online1 May 2002Published inissue 1 May 1950https://pubs.acs.org/doi/10.1021/ja01161a075https://doi.org/10.1021/ja01161a075research-articleACS PublicationsRequest reuse permissionsArticle Views143Altmetric-Citations15LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Intercellular adhesion molecule-1 (ICAM-1) expression correlated to inflammation (1989)

The presence of intercellular adhesion molecule-I (ICAM-I) on keratinocytes of psoriatic skin lesions before and during 8-methoxapsoralen and UVA light (PUVA) treatment was studied. ICAM-I was expressed on the keratinocytes in biopsies of the skin lesions of five patients with psoriasis. The patients who responded to PUVA treatment had a concurrent reduction of ICAM-I expression on the keratinocytes with a reduction of the number of cells in the mononuclear cellular infiltrate and a lessening of the severity of the disease. Patients who went into remission during therapy and then relapsed showed an increase in ICAM-I expression on keratinocytes with an increase in the number of cells in the mononuclear cell infiltrate and an increase in the severity of the disease. HLA-DR expression on keratinocytes was variable during treatment and showed no strong correlation with disease severity.
Direct bandpass sampling of multiple distinct RF signals (1999)

A goal in the software radio design philosophy is to place the analog-to-digital converter as near the antenna as possible. This objective has been demonstrated for the case of a single input signal. Bandpass sampling has been applied to downconvert, or intentionally alias, the information bandwidth of a radio frequency (RF) signal to a desired intermediate frequency. The design of the software radio becomes more interesting when two or more distinct signals are received. The traditional approach for multiple signals would be to bandpass sample a continuous span of spectrum containing all the desired signals. The disadvantage with this approach is that the sampling rate and associated discrete processing rate are based on the span of spectrum as opposed to the information bandwidths of the signals of interest. Proposed here is a technique to determine the absolute minimum sampling frequency for direct digitization of multiple, nonadjacent, frequency bands. The entire process is based on the calculation of a single parameter-the sampling frequency. The result is a simple, yet elegant, front-end design for the reception and bandpass sampling of multiple RF signals. Experimental results using RF transmissions from the US Global Positioning System-Standard Position Service (GPS-SPS) and the Russian Global Navigation Satellite System (GLONASS) are used to illustrate and verify the theory.
Direct, Nonoxidative Conversion of Methane to Ethylene, Aromatics, and Hydrogen (2014)

The efficient use of natural gas will require catalysts that can activate the first C-H bond of methane while suppressing complete dehydrogenation and avoiding overoxidation. We report that single iron sites embedded in a silica matrix enable direct, nonoxidative conversion of methane, exclusively to ethylene and aromatics. The reaction is initiated by catalytic generation of methyl radicals, followed by a series of gas-phase reactions. The absence of adjacent iron sites prevents catalytic C-C coupling, further oligomerization, and hence, coke deposition. At 1363 kelvin, methane conversion reached a maximum at 48.1% and ethylene selectivity peaked at 48.4%, whereas the total hydrocarbon selectivity exceeded 99%, representing an atom-economical transformation process of methane. The lattice-confined single iron sites delivered stable performance, with no deactivation observed during a 60-hour test.
Combined Inhibition of Tumor Necrosis Factor α and Interleukin‐17 As a Therapeutic Opportunity in Rheumatoid Arthritis: Development and Characterization of a Novel Bispecific Antibody (2014)

Combined blockade of TNFα and IL-17 was more effective than single blockade in inhibiting cytokine, chemokine, and matrix enzyme responses from human mesenchymal cells and in blocking tissue destruction associated with arthritis, and additionally showed a positive impact on rebalance of bone homeostasis. Bispecific anti-TNFα/IL-17 antibodies may have superior efficacy in the treatment of arthritis and may overcome the limited therapeutic responses obtained with single cytokine neutralization.
Aspirin: The Mechanism of Action Revisited in the Context of Pregnancy Complications (2017)

Aspirin is one of the most frequently used and cheapest drugs in medicine. It belongs to the non-steroidal anti-inflammatory drugs with a wide range of pharmacological activities, including analgesic, antipyretic, and antiplatelet properties. Currently, it is accepted to prescribe a low dose of aspirin to pregnant women who are at high risk of preeclampsia (PE) because it reduces the onset of this complication. Another pregnancy alteration in which a low dose of aspirin is recommended is the obstetric antiphospholipid syndrome (APS). The most recognized mechanism of action of aspirin is to inhibit the synthesis of prostaglandins but this by itself does not explain the repertoire of anti-inflammatory effects of aspirin. Later, another mechanism was described: the induction of the production of aspirin-triggered lipoxins (ATLs) from arachidonic acid by acetylation of the enzyme cyclooxygenase-2. The availability of a stable analog of ATL has stimulated investigations on the use of this analog and it has been found that, similar to endogenously produced lipoxins, ATL resolves inflammation and acts as antioxidant and immunomodulator. If we consider that in PE and in the obstetric APS, there is an underlying inflammatory process, aspirin might be used based on the induction of ATL. The objective of this review is to revisit the old and new mechanisms of action of aspirin. In particular, it intends to show other potential uses of this drug to prevent certain pregnancy complications in the light of its ability to induce anti-inflammatory and pro-resolving lipid-derived mediators.
Non-lymphoid hematopoietic neoplasia in cats: a retrospective study of 60 cases. (1988)

Sixty cats with hematologic abnormalities indicative of non-lymphoid hematopoietic neoplasia were classified into two groups, myelodysplastic syndromes (MDS) and acute myelogenous leukemias (AML), using criteria developed for human patients with similar diseases. Cats with myeloblast counts in bone marrow of less than 30% were classed as MDS and cats with myeloblast counts of 30% or greater were classed as AML. The clinical, laboratory, and postmortem findings in each group were described and compared. Clinical signs of disease were similar in both groups, the most common being inappetance, lethargy, and weakness. Non-regenerative anemia, macrocytosis, neutropenia, and thrombocytopenia were frequent hemogram abnormalities in both groups. Diagnostically useful differences in physical and peripheral blood findings were a higher prevalence of splenomegaly and/or hepatomegaly, thrombocytopenia, and severe anemia in the AML group. Circulating myeloblasts were found only in cats in the AML group. Outcome of disease was similar in both groups; 85% of the cats in each group died or were euthanatized within one week of diagnosis. In cats that were necropsied, extramedullary leukemic infiltrates were found in all cats in the AML group and in none of the cats in the MDS group.
The evolution of the existing carrier infrastructure (1999)

With the continuing explosion in data traffic, incumbent carriers have several alternatives in attempting to meet this demand. Carriers can either replace, overlay, or migrate their networks, and only a migration strategy provides a cost-effective and manageable solution.
ERM proteins: From cellular architecture to cell signaling (2000)

ERM (ezrin/radixin/moesin) proteins, concentrated in actin rich cell-surface structures, cross-link actin filaments with the plasma membrane. They are involved in the formation of microvilli, cell-cell adhesion, maintenance of cell shape, cell motility and membrane trafficking. Recent analyses reveal that they are not only involved in cytoskeleton organization but also in signaling pathway. They play an important role in the activation of members of the Rho family by recruiting their regulators. The functions of ERM proteins are regulated by their conformational charges: the intramolecular interaction between the N- and C-terminal domains of ERM proteins charges masks several binding sites, leading to a dormant protein. Different activation signals regulate ERM proteins functions by modulating these intramolecular interactions. The involvement of ERM proteins in many signaling pathways has led to study their role during development of different species.
Quantitative Interpretation of the Response of Surface Plasmon Resonance Sensors to Adsorbed Films (1998)

A simple but quantitative mathematical formalism for interpretation of surface plasmon resonance (SPR) signals from adsorbed films of a wide variety of structures is presented. It can be used to estimate adsorbed film thicknesses, surface coverages, or surface concentrations from the SPR response over the entire range of film thicknesses without relying on calibration curves of response versus known thicknesses or surface concentrations. This formalism is compared to more complex optical simulations. It is further tested by (1) calibrating the response of two SPR spectrometers to changes in bulk index of refraction, (2) using these calibrations with this formalism to predict responses to several well-characterized adlayer structures (alkanethiolates and serum albumin on gold, propylamine on COOH-functionalized gold), and then (3) comparing these predictions to measured SPR responses. Methods for estimating the refractive index of the adlayer material are also discussed. Detection limits in both bulk and adsorption-based analyses are discussed. The planar system used here has a detection limit of ∼0.003 nm in average film thickness for adsorbates whose refractive index differs from that of the solvent by only 0.1. The temperature sensitivities of these two SPR spectrometers are characterized and discussed in terms of detection limits.
Rate-distortion efficient video transmission from multiple servers (2005)

We address the problem of streaming video efficiently from mUl­ tiple servers in a distributed manner. Invoking a scalable video encoding format, we describe a network-friendly , rate-distortion efficient distributed streaming algorithm based on a robust dis­ tributed encoding paradigm. The algorithm is efficiently matched dynamically to both the video content and the network channel conditions. Due to t he d iversity effect of multiple servers, our dis­ tributed algorithm is immune to single points of failure, provides natural load-balancing of the multiple servers and a graceful degra­ dation in quality with an Increase in multi-server load or a decrease in network throughput. We present the results of our Internet ex­ periments that validate our hypotheses.
Influence of Nitrogen Doping on Oxygen Reduction Electrocatalysis at Carbon Nanofiber Electrodes (2005)

Nondoped and nitrogen-doped (N-doped) carbon nanofiber (CNF) electrodes were prepared via a floating catalyst chemical vapor deposition (CVD) method using precursors consisting of ferrocene and either xylene or pyridine to control the nitrogen content. Structural and compositional differences between the nondoped and N-doped varieties were assessed using TEM, BET, Raman, TGA, and XPS. Electrochemical methods were used to study the influence of nitrogen doping on the oxygen reduction reaction (ORR). The N-doped CNF electrodes demonstrate significant catalytic activity toward oxygen reduction in aqueous KNO(3) solutions at neutral to basic pH. Electrochemical data are presented which indicate that the ORR proceeds by the peroxide pathway via two successive two-electron reductions. However, for N-doped CNF electrodes, the reduction process can be treated as a catalytic regenerative process where the intermediate hydroperoxide (HO(2)(-)) is chemically decomposed to regenerate oxygen, 2HO(2)(-) <==> O(2) + 2OH(-). The proposed electrocatalysis mechanisms for ORR at both nondoped and N-doped varieties are supported by electrochemical simulations and by measured difference in hydroperoxide decomposition rate constants. Remarkably, approximately 100 fold enhancement for hydroperoxide decomposition is observed for N-doped CNFs, with rates comparable to the best known peroxide decomposition catalysts. Collectively the data indicate that exposed edge plane defects and nitrogen doping are important factors for influencing adsorption of reactive intermediates (i.e., superoxide, hydroperoxide) and for enhancing electrocatalysis for the ORR at nanostructured carbon electrodes.