gebhart/patrepeval huggingface dataset:
Apoptotic Cell Death During Treatment of Leukemias (1994)

The apoptosis-associated DNA strand breaks were detected in situ, in individual leukemic cells in peripheral blood and bone marrow of over 110 patients with different types of leukemia (ALL, AML, CML in blastic crisis, APL), prior to and during routine chemotherapy. The DNA strand breaks were labeled with digoxigenin- or biotin-conjugated dUTP in the reaction catalyzed by exogenous terminal deoxynucleotidyl transferase, and the cells, counterstained for DNA, were analyzed by bivariate flow cytometry. The proportion of cells with DNA strand breaks prior to therapy, most likely reflecting spontaneous apoptosis, varied from 0.1 to 16%, but in the large majority of cases was below 3%. Administration of drugs of different classes, which included DNA topoisomerase I (Topotecan) and II (mitoxantrone, VP-16) inhibitors, antimetabolite (ara-C) or microtubule poison (Taxol), all triggered the appearance of cells with extensive DNA breakage, typical of apoptosis, to up to 80%. The peak of the response, measured as maximal percent of cells with DNA strand breaks, which varied between individual patients by as much as factor 10, was generally seen between 8 to 24 h after the initial administration of DNA topoisomerase inhibitors, and somewhat later (48-72 h) during the response to Taxol or ara-C. Thus, the data show that the response to treatment with a variety of drugs, in terms of induction of apoptosis, can be conveniently measured by the present method. The prognostic value of the apoptotic index, before, as well as during treatment, is being estimated for each type of leukemia, in the ongoing prospective studies.
UV Light-Emitting Diode Fabricated on Hetero-ELO-Grown Al0.22Ga0.78N with Low Dislocation Density (2002)

Using a hetero-epitaxial lateral overgrowth (ELO) technology with low-temperature deposited AlN interlayer, high-quality crack-free Al0.22Ga0.78N with low dislocation density is realized. The dislocation density in the Al0.22Ga0.78N was reduced to as low as the order of 107 cm—2 over the whole wafer. Applying the high-quality AlGaN layer to a UV light-emitting diode (LED), high output power of more than 0.1 mW at a forward current of 50 mA has been demonstrated with the emission peak wavelengths from 323 to 352 nm. The highest output power of 0.6 mW is obtained for the 352 nm LED with GaN/AlGaN multiple quantum well active layer. The emission efficiency was dependent on the wavelength, and the 323 nm LED has the lowest output power of 0.18 mW at 50 mA bias. One of the factors determining the external quantum efficiency is thought to be an inferior hole spread in highly resistive p-type layers.
Stable and Transparent Superhydrophobic Nanoparticle Films (2009)

A superhydrophobic surface with a static water contact angle (theta(w)) > 150 degrees was created by a simple "dip-coating" method of 60-nm SiO2 nanoparticles onto an amine-terminated (NH2) self-assembled monolayer (SAM) glass/silicon oxide substrate, followed by chemical vapor deposition of a fluorinated adsorbate. For comparison, a close-packed nanoparticle film, formed by convective assembly, gave theta(w) approximately 120 degrees. The stability of the superhydrophobic coating was enhanced by sintering of the nanoparticles in an O2 environment at high temperature (1100 degress C). A sliding angle of < 5 degrees indicated the self-cleaning properties of the surface. The dip-coating method can be applied to glass substrates to prepare surfaces that are superhydrophobic and transparent.
Metathesis in Oleochemistry (1998)

Metathesis is an attractive reaction for the conversion of oleochemical feedstocks into useful chemical products. Thus, metathesis of unsaturated fatty acid esters (the oleochemical raw materials) provides a convenient route to unsaturated diesters which can be used as intermediates for the production of polymers and specialty chemicals. Cross-metathesis with olefins is a means to change the chain length of fatty acids and derivatives; cross-metathesis with ethene (ethenolysis) gives compounds with terminal double bonds, having a broad range of applications. Ethenolysis of fatty oils or triglycerides allows the transformation of long-chain fatty acid triglycerides into fatty oils of lower molecular weight. Several highly selective catalyst systems - homogeneous as well as heterogeneous - have proven to be successful for the metathesis of unsaturated esters. Especially modified heterogeneous rhenium- and molybdenum-based catalysts have attracted much attention. Considering catalyst activation and regeneration procedures, rhenium-based catalysts are to be preferred.
New statistical method for multifont printed Tibetan/English OCR (2003)

Tibetan optical character recognition (OCR) system plays a crucial role in the Chinese multi-language information processing system. This paper proposed a new statistical method to perform multi-font printed Tibetan/English character recognition. A robust Tibetan character recognition kernel is elaborately designed. Incorporating with previous English character recognition techniques, the recognition accuracy on a test set containing 206,100 multi-font printed characters reaches 99.67%, which shows the validity of the proposed method.
Roles for fibrinogen, immunoglobulin and complement in platelet activation promoted by Staphylococcus aureus clumping factor A (2005)

Staphylococcus aureus is an important cause of infective endocarditis (IE) in patients without a history of prior heart valve damage. The ability to stimulate the activation of resting platelets and their subsequent aggregation is regarded as an important virulence factor of bacteria that cause IE. Clumping factor A is the dominant surface protein responsible for platelet activation by S. aureus cells in the stationary phase of growth. This study used Lactococcus lactis as a surrogate host to study the mechanism of ClfA-promoted platelet activation. Expression of ClfA from a nisin-inducible promoter demonstrated that a minimum level of surface-expressed ClfA was required. Using platelets that were purified from plasma, the requirement for both bound fibrinogen and immunoglobulin was demonstrated. The immunoglobulin G (IgG) requirement is consistent with the potent inhibition of platelet activation by a monoclonal antibody specific for the platelet FcgammaRIIa receptor. Furthermore the IgG must contain antibodies specific for the ClfA A domain. A model is proposed whereby bacterial cells armed with a sufficient number of surface-bound fibrinogen molecules can engage resting platelet glycoprotein GPIIb/IIIa, aided by bound IgG molecules, which encourages the clustering of FcgammaRIIa receptors. This can trigger activation of signal transduction leading to activation of GPIIb/IIIa and aggregation of platelets. In addition, analysis of a mutant of ClfA totally lacking the ability to bind fibrinogen revealed a second, although less efficient, mechanism of platelet activation. The fibrinogen-independent pathway required IgG and complement deposition to trigger platelet aggregation.
The UPF1 RNA surveillance gene is commonly mutated in pancreatic adenosquamous carcinoma (2014)

Pancreatic adenosquamous carcinoma (ASC) is an enigmatic and aggressive tumor that has a worse prognosis and higher metastatic potential than its adenocarcinoma counterpart. Here we report that ASC tumors frequently harbor somatically acquired mutations in the UPF1 gene, which encodes the core component of the nonsense-mediated RNA decay (NMD) pathway. These tumor-specific mutations alter UPF1 RNA splicing and perturb NMD, leading to upregulated levels of NMD substrate mRNAs. UPF1 mutations are, to our knowledge, the first known unique molecular signatures of pancreatic ASC.
Nerve growth factor (NGF) prevents the shift in ocular dominance distribution of visual cortical neurons in monocularly deprived rats (1992)

The hypothesis that NGF could play a role in the plasticity of the developing mammalian visual cortex was tested in monocularly deprived (MD) rats. In particular, we have asked whether an exogenous supply of NGF could prevent the changes in ocular dominance distribution induced by monocular deprivation. Hooded rats were monocularly deprived for 1 month, starting at postnatal day 14 (P14), immediately before eye opening, by means of eyelid suture. In eight rats, only monocular deprivation was performed; in eight rats, monocular deprivation was combined with intraventricular injections of beta-NGF, and in three rats, with intraventricular injections of cytochrome C. Injections (2 microliters) were given every other day for a period of 1 month. Single neuron activity was recorded in the primary visual cortex of MD rats, MD rats treated with NGF, and MD rats treated with cytochrome C at the end of the deprivation period, and in normal rats of the same age. We found that monocular deprivation caused a striking change in the ocular dominance distribution of untreated MD rats, reducing binocular cells by a factor of two and increasing by a factor of eight the number of cells dominated by the nondeprived eye. In MD NGF-treated rats, the ocular dominance distribution was indistinguishable from the normal. Cytochrome C treatment was completely ineffective in preventing the ocular dominance shift induced by monocular deprivation. To test whether NGF affected cortical physiology or interfered with transmission of visual information, we evaluated in NGF-treated rats the spontaneous discharge and the orientation selectivity. We found these functional properties to be in the normal range. We conclude that NGF is effective in preventing the effects of monocular deprivation in the rat visual cortex and suggest that NGF is a crucial factor in the competitive processes leading to the stabilization of functional geniculocortical connections during the critical period.
Analysis of complications of argon laser treatment for port wine hemangiomas with reference to striped technique (1983)

Argon laser treatment of port wine hemangiomas has evolved greatly in technique. Since 1979, we have treated 150 patients with the "zebra strike" technique in order to enhance fading and lessen the incidence of complications or side effects. Eighty-one such patients are studied in depth with at least an 18-month follow-up on all patients. The "zebra stripe" technique is described in detail. Analysis of fading shows a 64% excellent or good result in all patients and analysis of sponginess shows that a marked reduction of sponginess is possible by the laser. Side effects and complications including hypopigmentation, texture change, and indentation are discussed in detail. Analysis of scarring shows an overall scar rate of 15% with a general scar rate of 7.4% if you exclude the lip and nasolabial area. Residual striping was present to a slight degree in 34% of the patients and to a major degree in 7% of the patients. All factors are discussed as far as age, complexion, sex, color or port wine stain and related to stripe technique.
Intercellular transfer of a glycosylphosphatidylinositol (GPI)-linked protein: release and uptake of CD4-GPI from recombinant adeno-associated virus-transduced HeLa cells. (1996)

A diverse group of GPI-anchored protein structures are ubiquitously expressed on the external cell membranes of eukaryotes. Whereas the physiological role for these structures is usually defined by their protein component, the precise biological significance of the glycolipid anchors remains vague. In the course of producing a HeLa cell line (JM88) that contained a recombinant adeno-associated virus genome expressing a GPI-anchored CD4-GPI fusion protein on the surface of the cells, we noted the transfer of CD4-GPI to native HeLa cells. Transfer occurred after direct cell contact or exposure to JM88 cell supernatants. The magnitude of contact-mediated CD4-GPI transfer correlated with temperature. Supernatant CD4-GPI also attached to human red blood cells and could be cleaved with phosphatidylinositol-specific phospholipase C. The attached CD4-GPI remained biologically active after transfer and permitted the formation of syncytium when coated HeLa cells were incubated with glycoprotein 160 expressing H9 cells. JM88 cells provide a model for the production, release, and reattachment of CD4-GPI and may furnish insight into a physiologic role of naturally occurring GPI-anchored proteins. This approach may also allow the production of other recombinant GPI-anchored proteins for laboratory and clinical investigation.
Intercellular adhesion molecule-2 (CD102) binds to the leukocyte integrin CD11b/CD18 through the A domain (1995)

The interactions between the leukocyte-specific beta 2-integrins cluster of differentiation (CD) Ag CD11/CD18 and their ligands, the intercellular adhesion molecules (ICAMs), play important roles in many adhesion-dependent leukocyte functions. ICAM-1 is known to be a ligand for both CD11a/CD18 and CD11b/CD18. ICAM-2, whose two extracellular Ig domains show the highest homology to the two NH2-terminal domains of ICAM-1, has been previously shown to be a ligand for CD11a/CD18. We recently found that a 22-amino acid CD11a/CD18-binding peptide, P1, derived from the first domain of ICAM-2, also binds to purified CD11b/CD18. In the present study, we demonstrate that the ICAM-2 protein interacts with CD11b/CD18, and the binding is through the CD11b A domain.
Image Super-Resolution Using Deep Convolutional Networks (2015)

We propose a deep learning method for single image super-resolution (SR). Our method directly learns an end-to-end mapping between the low/high-resolution images. The mapping is represented as a deep convolutional neural network (CNN) that takes the low-resolution image as the input and outputs the high-resolution one. We further show that traditional sparse-coding-based SR methods can also be viewed as a deep convolutional network. But unlike traditional methods that handle each component separately, our method jointly optimizes all layers. Our deep CNN has a lightweight structure, yet demonstrates state-of-the-art restoration quality, and achieves fast speed for practical on-line usage. We explore different network structures and parameter settings to achieve trade-offs between performance and speed. Moreover, we extend our network to cope with three color channels simultaneously, and show better overall reconstruction quality.
REGULATION OF MATRIX METALLOPROTEINASES - THEIR ROLE IN TUMOR INVASION AND METASTASIS (1993)

In order for tumor cells to colonise secondary organs and tissues it is necessary for them to be able to complete all the essential steps of the metastatic cascade. We discuss here some of the important aspects of this process, highlighting those events likely to be important in the control of tumor cell invasion. The expression of matrix metalloproteinases (MMP) capable of degrading tissue matrix or basement membranes, constitutes an important feature of tumor cell escape from the primary neoplasm and entry into/ colonisation of the secondary body site. In particular, the balance between MMP and protease inhibitor expression will determine the invasive capacity of a cancer cell. The molecular control of gene expression, together with the molecules important in regulating the production of proteinases and their inhibitors is complex, and the important facets of these pathways are discussed. Cytokines, particularly tumor necrosis factor-alpha (TNF-alpha), interleukin-1 (IL-1) and transforming growth factor-beta (TGF-beta), play a crucial role in modulating MMP-2 and MMP-9 expression, and these, together with other regulatory cytokines constitute an important mechanism whereby the tumor cells can increase their invasive potential through the secretion of proteases.
Tyrosine phosphorylation is a signal for the trafficking of pp85, an 85-kDa phosphorylated polypeptide associated with phosphatidylinositol kinase activity. (1990)

A family of 85/86-kDa (85K/86K) polypeptides closely linked to phosphatidylinositol kinase activity is found in polyoma middle-sized tumor antigen (MTAg)/pp60c-src complexes. MTAg and the 85-kDa phosphoprotein (pp85) could be reassociated in solution, or on blots, after denaturation with SDS. Results from such experiments focus attention on phosphorylation in controlling intracellular sorting and activation of pp85. Tyrosine phosphorylation seems important for recruitment of pp85 from cytosol to membrane. By blotting, pp85 is substantially cytosolic, whereas that recognized by anti-phosphotyrosine antibody is almost exclusively in membranes. Tyrosine phosphorylation also determined association of pp85 with MTAg. Manipulation of MTAg tyrosine phosphorylation, for example, by expressing MTAg using baculovirus vectors in the absence or presence of pp60c-src, dramatically affects reassociation. Finally, tyrosine phosphorylation appears to be involved in release of pp85 from MTAg, since vanadate increased its rate of dissociation.
License plate localization and recognition in camera pictures (2002)

This paper presents an approach to license plate localization and recognition. A proposed method is designed to perform recognition of any kind of license plates under any environmental conditions. The main assumption of this method is the ability of recognition of all license plates which can be found in an individual picture. To solve the problem of localization of a license plate two independent methods are used. The first one was based on the connected components analysis and the second one searches for the “signature” of the license plate at the image. Segmentation of characters is performed by using vertical projection of license plate’s image. However, a simple neural network is used to recognize them. Finally, to separate correct license plates from other captions in the picture, during the license plate recognition process, a syntax analysis is used. The proposed approach is discussed together with results obtained on a benchmark data set of license plate pictures. In this paper examples of correct and incorrect results are also presented, as well as possible practical applications of proposed method.
Molecular mechanisms of hematologic malignancies. (1993)

This article reviews both the role of signal transduction in human cancer and the recently uncovered molecular mechanisms involved in a large number of human hematologic malignancies. Chronic myelogenous leukemia, follicular lymphoma, and colorectal carcinoma are used as models to illustrate the different, as well as partly convergent, molecular pathways involved in the multistep process of human neoplasias. Examples are also provided as to how unique molecular markers can be used as fast, sensitive, and precise tools for cancer prevention, early diagnosis, and the management of residual disease.
Materials design and development of fluoropolymers for use as pellicles in 157-nm photolithography (2001)

The introduction of 157 nm as the next optical lithography wavelength has created a need for new soft (polymeric) or hard (quartz) pellicle materials optimized for this wavelength. Materials design and development of ultra transparent fluoropolymers suitable for 157 nm soft pellicle applications has produced a number of promising candidate materials with absorbances below 0.03/micrometer as is necessary to achieve pellicle transmissions above 95%. We have developed 12 families of experimental TeflonAF<SUP>R</SUP> (TAFx) materials which have sufficient transparency to produce transmissions above 95%. For the successful fabrication of 157 nm pellicles from these materials, the fluoropolymers must have appropriate physical properties to permit the spin coating of thin polymer films and their lifting and adhesive mounting to pellicle frames, the processes which produce free standing pellicle membranes of micron scale thickness. Relevant physical properties include molecular weight, glass transition temperature, and mechanical strength and toughness. We have successfully developed various of the ultra transparent TAFx polymer families with these physical properties. Upon irradiation these 157 nm pellicle polymers undergo photochemical darkening, which reduces the 157 nm transmission of the material. Measurements of the photochemical darkening rate allow the estimation of the pellicle lifetime corresponding to a 10% drop in 157 nm transmission. Increasing the 157 nm lifetime of fluoropolymers involves simultaneous optimization of the materials, the pellicle and the end use. Similar optimization was essential to achieve the desired radiation durability lifetimes for pellicles successfully developed for use with KrF (248 nm) and ArF (193 nm) lithography.
Ixr1, a Yeast Protein That Binds to Platinated DNA and Confers Sensitivity to Cisplatin (1993)

Structure-specific recognition proteins (SSRPs) bind to DNA containing intrastrand cross-links formed by the anticancer drug cisplatin. A yeast gene encoding an SSRP, designated IXR1, was cloned and sequenced. The Ixr1 protein, a member of the high mobility group-box protein family, bound specifically to DNA modified with cisplatin but not inactive platinum compounds. A yeast strain with an inactivated IXR1 gene was half as sensitive to cisplatin and accumulated one-third as many platinum-DNA lesions after treatment with cisplatin as the parental strain. These findings suggest that SSRPs play a role in mediating the cytotoxicity of cisplatin.
Assembly of nanodevices with carbon nanotubes through nanorobotic manipulations (2003)

Properties and potential applications of carbon nanotubes are summarized by emphasizing the aspects of nanoelectronics and nanoelectromechanical systems (NEMS). The main technologies for the assembly of nanodevices through nanomanipulations with scanning probe microscopes and nanorobotic manipulators are overviewed, focusing on that of nanotubes. Key techniques for nanoassembly include the preparation of nano building blocks and property characterization of them, the positioning of the building blocks with nanometer-scale resolution, and the connection of them. Nanorobotic manipulations, which are characterized by multiple degrees of freedom (DOFs) with both position and orientation control, independently actuated multiprobes, and a real-time observation system, are one of the most promising technologies for assembling complex nanodevices in three-dimensional space. With a nano laboratory, a prototype nanomanufacturing system based on a 16-DOF nanorobotic manipulation system, the assembly of nanodevices with multiwalled carbon nanotubes are presented. Nanotube-based building blocks are prepared by directly picking up, in situ property characterization, destructive fabrication, and shape modifications. Kinds of nanotube junctions, the fundamental elements for both nanoelectronics and NEMS, are constructed by positioning the building blocks together under the real-time observation with a field-emission scanning electron microscope, connecting them with naturally existing van der Waals forces, electron-beam-induced deposition, or mechanochemical bonding.