gebhart/patrepeval huggingface dataset:
Suppression of Core 1 Gal-Transferase Is Associated with Reduction of TF and Reciprocal Increase of Tn, sialyl-Tn and Core 3 Glycans in Human Colon Cancer Cells (2013)

It has long been presumed, though with surprisingly little evidence, a competition between Core 1 Gal-transferase (C1GalT), Core 3 GlcNAc-transferase (C3GnT) and sialyl-transferase (ST6GalNAc-T) for elongation of O-linked mucin-type glycans initiated with GalNAcα-Ser/Thr. This study tested this presumption by selective suppression of one of these glycosyltransferases and then analysed the expressions of the enzymatic products of the other three glycosyltransferases. It was found that siRNA suppression of C1GalT markedly reduced the expression of Galβ1,3GalNAcα- (Core 1) and in the meantime increased the expressions of sialyl-GalNAcα- (sialyl-Tn), GalNAcα- (Tn) and GlcNAcβ1,3GalNAcα- (Core 3)-associated glycans in human colon cancer HT29 and SW620 cells. This supports a competitive modification of the GalNAcα-Ser/Thr between C1GalT, C3GnT and ST6GalNAc-T in O-glycan biosynthesis. As Tn, TF and sialyl-Tn are oncofetal antigens and are over-expressed in most human cancers, this information is useful for the development of glycosyltransferase-targeted therapeutic strategies for cancer treatment.
Strained-Si/SiGe-on-insulator inversion layers: The role of strained-Si layer thickness on electron mobility (2002)

We show by Monte Carlo simulation that electron mobility is greater when strained-silicon inversion layers are grown on SiGe-on-insulator substrates than when unstrained-silicon-on-insulator devices are employed (as experimentally observed). However, the electron mobility in strained-Si/SiGe-on-insulator inversion layers is strongly dependent on the strained-silicon layer thickness, TSi, due to an increase of the phonon scattering, which partially counteracts the increase in the mobility achieved by the strain. This effect is less important as the germanium mole fraction, x, is reduced, and as the value of TSi increases.
Memory phenomena in heterojunction structures: Evidence for suppressed thermionic emission (1988)

The physics of a new GaAs/AlGaAs floating-gate memory device is investigated. Long electron storage times (e.g., 4 h at 140 K) have been measured and linked to the indirect nature of the GaAs-AlAs conduction-band discontinuity. A simple analysis of the structure shows that scattering-assisted tunneling processes and band-structure effects, not included in standard thermionic emission theories, must be considered to properly account for the observed long retention times.
Experimental Verification of Caustic‐Side Solvent Extraction for Removal of Cesium from Tank Waste (2003)

Abstract A caustic‐side solvent extraction (CSSX) process was developed to remove Cs from Savannah River Site (SRS) high‐level waste. The CSSX process was verified in a series of flowsheet tests at Argonne National Laboratory (ANL) in a minicontactor (2‐cm centrifugal contactor) using simulant. The CSSX solvent, which was developed at Oak Ridge National Laboratory (ORNL), consists of a calixarene‐crown ether as the extractant, an alkyl aryl polyether as the modifier, trioctylamine as the suppressant, and Isopar®L as the diluent. For Cs removal from the SRS tank waste, the key process goals are that: (1) Cs is removed from the waste with a decontamination factor greater than 40,000 and (2) the recovered Cs is concentrated by a factor of 15 in dilute nitric acid. In the flowsheet verification tests, the objectives were to: (1) prove that these process goals could be met; (2) demonstrate that they could be maintained over a period of several days as the CSSX solvent is recycled; and (3) verify that the process goals could still be met after the solvent composition was adjusted. The change in composition eliminated the possibility that the calixarene‐crown ether could precipitate from the solvent. The process goals were met for each of the verification tests. The results of these tests, which are summarized here, show that the CSSX process is a very effective way to remove Cs from caustic‐side waste.
Two-Component Dendritic Gel:  Effect of Spacer Chain Length on the Supramolecular Chiral Assembly (2004)

The present study investigates in detail the physical gelation of toluene induced by the addition of simple aliphatic diamines to a dendritic L-lysine-based peptide. The gel-phase material obtained was characterized using differential scanning calorimetry, scanning electron microscopy, small-angle X-ray scattering, circular dichroism, 1H NMR, and X-ray diffraction. When the length of the aliphatic diamine is incrementally increased (C6-C12), the thermally reversible gel-sol transition temperature is dramatically increased (4-105 degrees C). This paper shows that the molecular information preset in the diamine is transcribed into the supramolecular assembly on the microscale and that this, in turn, controls the highly tunable macroscopic materials properties. The results also demonstrate the importance of chirality in the assembly process and highlight the role played by the aliphatic diamine in modulating the transcription of chirality from the molecular to the microscopic level.
Load‐Adaptive MUI/ISI‐Resilient Generalized Multi‐Carrier CDMA with Linear and DF Receivers (2000)

Abstract A plethora of single‐carrier and multi‐carrier (MC) CDMA systems have been proposed recently to mitigate intersymbol interference (ISI) and eliminate multiuser interference (MUI). We present a unifying all‐digital Generalized Multicanier CDMA framework which enables us to describe existing CDMA schemes and to highlight thorny problems associated with them. To improve the bit error rate (BER) performance of existing schemes, we design block FIR transmitters and decision feedback (DF) receivers based on an inner‐code/outer‐code principle, which guarantees MUI/ISI‐elimination regardless of the frequency‐selective physical channel. The flexibility of our framework allows further BER enhancements by taking into account the load in the system (number of active users), while blind channel estimation results in bandwidth savings. Simulations illustrate the superiority of our framework over competing MC CDMA alternatives especially in the presence of uplink multipath channels.
The Expanding Role of Aerosols in Systemic Drug Delivery, Gene Therapy, and Vaccination (2005)

Aerosolized medications have been used for centuries to treat respiratory diseases. Until recently, inhalation therapy focused primarily on the treatment of asthma and chronic obstructive pulmonary disease, and the pressurized metered-dose inhaler was the delivery device of choice. However, the role of aerosol therapy is clearly expanding beyond that initial focus. This expansion has been driven by the Montreal protocol and the need to eliminate chlorofluorocarbons (CFCs) from traditional metered-dose inhalers, by the need for delivery devices and formulations that can efficiently and reproducibly target the systemic circulation for the delivery of proteins and peptides, and by developments in medicine that have made it possible to consider curing lung diseases with aerosolized gene therapy and preventing epidemics of influenza and measles with aerosolized vaccines. Each of these drivers has contributed to a decade or more of unprecedented research and innovation that has altered how we think about aerosol delivery and has expanded the role of aerosol therapy into the fields of systemic drug delivery, gene therapy, and vaccination. During this decade of innovation, we have witnessed the coming of age of dry powder inhalers, the development of new soft mist inhalers, and improved pressurized metered-dose inhaler delivery as a result of the replacement of CFC propellants with hydrofluoroalkane. The continued expansion of the role of aerosol therapy will probably depend on demonstration of the safety of this route of administration for drugs that have their targets outside the lung and are administered long term (eg, insulin aerosol), on the development of new drugs and drug carriers that can efficiently target hard-to-reach cell populations within the lungs of patients with disease (eg, patients with cystic fibrosis or lung cancer), and on the development of devices that improve aerosol delivery to infants, so that early intervention in disease processes with aerosol therapy has a high probability of success.
The Critical Role of Basement Membrane-Independent Laminin γ1 Chain during Axon Regeneration in the CNS (2002)

We have addressed the question of whether a family of axon growth-promoting molecules known as the laminins may play a role during axon regeneration in the CNS. A narrow sickle-shaped region containing a basal lamina-independent form of laminin exists in and around the cell bodies and proximal portion of the apical dendrites of CA3 pyramidal neurons of the postnatal hippocampus. To understand the possible function of laminin in axon regeneration within this pathway, we have manipulated laminin synthesis at the mRNA level in a slice culture model of the lesioned mossy system. In this model early postnatal mossy fibers severed near the hilus can regenerate across the lesion and elongate rapidly within strata lucidum and pyramidale. In slice cultures of the postnatal day 4 hippocampus, 2 d before lesion and then continuing for 1-5 d after lesion, translation of the gamma1 chain product of laminin was reduced by using antisense oligodeoxyribonucleotides and DNA enzymes. In the setting of the lesioned organotypic hippocampal slice, astroglial repair of the lesion and overall glial patterning were unperturbed by the antisense or DNA enzyme treatments. However, unlike controls, in the treated, lesioned slices the vast majority of regenerating mossy fibers could not cross the lesion site; those that did were very much shorter than usual, and they took a meandering course. In a recovery experiment in which the DNA enzyme or antisense oligos were washed away, laminin immunoreactivity returned and mossy fiber regeneration resumed. These results demonstrate the critical role of laminin(s) in an axon regeneration model of the CNS.
Thermal microcrack distribution control in GaN layers on Si substrates by lateral confined epitaxy (2001)

GaN epitaxial layers grown uniformly on Si substrates suffer from randomly distributed thermal cracks. The growth on prepatterned Si substrates is demonstrated as an efficient way to control the geometrical distribution of the thermal cracks. In order to study this effect and to find the maximum crack-free lateral dimension of a GaN patterned unit on Si, a simple procedure termed lateral confined epitaxy (LCE) was developed. This procedure confines the growth of GaN to separate mesas of Si, which are defined on the Si substrate prior to the growth. The growth is performed by a single, continuous metalorganic chemical vapor deposition run. LCE enables the variation of mesa lateral size, while keeping the growth rate nearly unchanged. By performing a set of LCE growth runs of ∼0.7 μm GaN, on Si mesas of varying lateral dimensions, we specified the maximum crack-free range of GaN on Si as 14.0±0.3 μm, for that GaN thickness. A reduction of random crack density is observed with decreasing GaN pattern size and is explained in terms of shear-lag stress distribution.
Triterpene Glycosides from the Roots of Codonopsis lanceolata (2008)

In the course of the development of new designer foods using the roots of Codonopsis lanceolata, we found that hot-water extracts of C. lanceolata recovered decreased testosterone levels in the blood and accelerated the restoration of reproductive dysfunction induced by hyperthermic treatment in male mice. Thus we studied the constituents of the polar fraction of the roots of C. lanceolata and identified six new triterpene saponins, lancemasides B (2), C (3), D (4), E (5), F (6), and G (7), along with the known saponin lancemasaide A (1) and phenylpropanoid glycosides 8-10. The structures of the new compounds 2-7 were determined by means of spectral data including 2D-NMR studies and chemical reactions to be oleanan-type bisdesmoside with sugars at C-3 and C-28. Compounds 2-6 have echinocystic acid as an aglycone, and compound 7 has asterogenic acid as an aglycone. Identification of the sugars and determination of their D,L-chiralities were carried out by application of the exciton chirality method to the per-O-p-bromobenzoylmethyl sugar derived from saponins.
Tandem Mass Spectrometric Analysis for Amino, Organic, and Fatty Acid Disorders in Newborn Dried Blood Spots (2001)

In screening for 23 metabolic disorders by MS/MS, an mean positive predictive value of 8% can be achieved when using cutoffs for individual markers determined empirically on newborns.
3-Carboxy-2,5-piperazinedione and Derivatives (1956)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXT3-Carboxy-2,5-piperazinedione and DerivativesH. E. Zaugg, M. Freifelder, H. J. Glenn, B. W. Horrom, G. R. Stone, and M. R. VernstenCite this: J. Am. Chem. Soc. 1956, 78, 11, 2626–2631Publication Date (Print):June 1, 1956Publication History Published online1 May 2002Published inissue 1 June 1956https://pubs.acs.org/doi/10.1021/ja01592a082https://doi.org/10.1021/ja01592a082research-articleACS PublicationsRequest reuse permissionsArticle Views314Altmetric-Citations9LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Coordinated Beamforming for Multiuser MIMO Systems with Limited Feedforward (2006)

Jointly optimized linear transmit beamforming and receive combining is a low complexity approach for communication in the multiuser MIMO (multiple input multiple output) broadcast channel. This paper proposes an iterative algorithm for jointly designing the beamforming and combining vectors, which enforces a zero interference requirement after combining. Since the optimization is performed at the base station with channel state information for all the users, the receive beamformers are quantized at the base station and sent to the users via a low- rate feedforward control channel. Rate bounds are provided to estimate the impact of quantization loss on the achievable rate in Rayleigh channels is performed. Simulations show that the proposed approach using Grassmannian codebooks approaches the sum capacity of the MIMO broadcast channel.
Specific and nonspecific stimulation of resistance to the growth and metastasis of the line 1 lung carcinoma. (1975)

The effects of specific dead tumor cell immunization and nonspecific immunostimulation with Corynebacterium parvum on the s.c. growth of the line 1 carcinoma in syngeneic BALB/c mice have been studied. Injection of heavily irradiated line ) carcinoma cells did not inhibit the transplantability or growth of the line 1 carcinoma, and in certain cases these treatments actually prolonged the period of rapid growth. This latter observation was traced to a mild inhibition of metastatic spread, which itself can slow the s.c. tumor growth. Treatment of the mice with 0.25 mg of C. parvum 7 days prior to transplant of the tumor had no effect on its growth by itself; but in combination with i.v.-injected tumor cells, which themselves had no effect on tumor growth, a 45% inhibition of tumor growth was induced. These data demonstrate that, in the weekly immunogenic line 1 carcinoma system, inhibition of s.c. transplants requires not only exposure to tumor antigens but also stimulation of the immunological reactivity.
Sad benefit in face working memory: An emotional bias of melancholic depression (2011)

Emotion biases feature prominently in cognitive theories of depression and are a focus of psychological interventions. However, there is presently no stable neurocognitive marker of altered emotion-cognition interactions in depression. One reason may be the heterogeneity of major depressive disorder. Our aim in the present study was to find an emotional bias that differentiates patients with melancholic depression from controls, and patients with melancholic from those with non-melancholic depression. We used a working memory paradigm for emotional faces, where two faces with angry, happy, neutral, sad or fearful expression had to be retained over one second. Twenty patients with melancholic depression, 20 age-, education- and gender-matched control participants and 20 patients with non-melancholic depression participated in the study. We analysed performance on the working memory task using signal detection measures. We found an interaction between group and emotion on working memory performance that was driven by the higher performance for sad faces compared to other categories in the melancholic group. We computed a measure of "sad benefit", which distinguished melancholic and non-melancholic patients with good sensitivity and specificity. However, replication studies and formal discriminant analysis will be needed in order to assess whether emotion bias in working memory may become a useful diagnostic tool to distinguish these two syndromes.
Refractory occipital neuralgia: preoperative assessment with CT-guided nerve block prior to dorsal cervical rhizotomy. (2004)

CT fluoroscopy-guided percutaneous cervical nerve block is useful for the confirmation of occipital neuralgia, for demonstrating to patients the sensory effects of nerve sectioning, and possibly as a guide for selection of patients for intradural cervical dorsal rhizotomy. Although not statistically significant, there was a trend toward better response to rhizotomy in patients without prior head or neck surgery.
P-selectin glycoprotein ligand-1 is broadly expressed in cells of myeloid, lymphoid, and dendritic lineage and in some nonhematopoietic cells (1996)

P-selectin glycoprotein ligand-1 (PSGL-1) is a muclin-like glycoportein ligand for P- and E-selectin on myeloid cells and a subset of lymphocytes. We used flow cytometry and immunohistochemistry to examine expression of PSGL-1 on minor leukocyte populations, differentiating hematopoletic cells, and nonhematopoietic tissues using two monoclonal antibodies to distinct protein epitopes on PSGL-1. In the bone marrow, PSGL-1 was expressed on myeloid cells from the myeloblast stage to the segmented neutrophil, but was not detected on erythroblasts or megakaryocytes. All types of circulating myeloid cells expressed PSGL-1, and PSGL-1 was retained after extravasation of myetoid cells into tissues. PSGL-1 was also expressed on circulating dendritic cells, monocyte-derived dendritic cells, dendritic cells in lymphoid tissues and epidermis, and follicular dendritic cells. All types of lymphoid cells examined expressed PSGK-1, including immature and mature thymocytes, naive and memory T cells, gamma/delta T cells, netural killer cells, B cells and CD34+ progenitor cells. However, PSGL-1 levels were substantially lower on tonsillar lymphocytes than on circulating lymphocytes, suggesting that PSGL-1 expression is down regulated during or after entry of lymphocytes into secondary lymphoid tissue. Although PSGL-1 antigen was detected primarily on hamatopoietic cells, it was also present on time epithelium of the fallopian tube. Furthermore, PSGL-1 antigen gen was detected sporadically on microvascular endothelium in some pathologic tissues. This suggests that PSGL-1 may have functions other than mediating leukocyte adhersion.
Fluorescence photooxidation with eosin: a method for high resolution immunolocalization and in situ hybridization detection for light and electron microscopy. (1994)

A simple method is described for high-resolution light and electron microscopic immunolocalization of proteins in cells and tissues by immunofluorescence and subsequent photooxidation of diaminobenzidine tetrahydrochloride into an insoluble osmiophilic polymer. By using eosin as the fluorescent marker, a substantial improvement in sensitivity is achieved in the photooxidation process over other conventional fluorescent compounds. The technique allows for precise correlative immunolocalization studies on the same sample using fluorescence, transmitted light and electron microscopy. Furthermore, because eosin is smaller in size than other conventional markers, this method results in improved penetration of labeling reagents compared to gold or enzyme based procedures. The improved penetration allows for three-dimensional immunolocalization using high voltage electron microscopy. Fluorescence photooxidation can also be used for high resolution light and electron microscopic localization of specific nucleic acid sequences by in situ hybridization utilizing biotinylated probes followed by an eosin-streptavidin conjugate.
The Chemistry of Self-Splicing RNA and RNA Enzymes (1987)

Proteins are not the only catalysts of cellular reactions; there is a growing list of RNA molecules that catalyze RNA cleavage and joining reactions. The chemical mechanisms of RNA-catalyzed reactions are discussed with emphasis on the self-splicing ribosomal RNA precursor of Tetrahymena and the enzymatic activities of its intervening sequence RNA. Wherever appropriate, catalysis by RNA is compared to catalysis by protein enzymes.
The Effects of Chronic Ketorolac Tromethamine (Toradol) on Wound Healing (1996)

Intramuscular ketorolac is a commonly used nonsteroidal anti-inflammatory (NSAI) agent for analgesia in surgical patients. Increasing numbers of surgical patients are chronically taking some form of an NSAI drug. We examined the effects of "chronic" intramuscular ketorolac on the healing of a closed linear surgical wound in the rat. Wistar rats were pretreated with 4 mg per kilogram per day ketorolac intramuscularly prior to receiving dorsal incisional wounds. The ketorolac treatment was continued and after 2 weeks the wounds were excised and separated with a tensiometer to measure mechanical properties. Breaking strength was directly measured, tensile strength was calculated, and collagen concentrations at the wound site were determined. A significant decrease in the mean breaking strength was seen in the ketorolac-treated animals when compared to controls. The ketorolac-treated animals had a mean tensile strength less than the controls, although this difference did not reach statistical significance. The mean collagen concentration of the ketorolac-treated wounds was significantly less than the untreated wounds. Use of ketorolac for just 1 week prior to surgery in rats produced a significant decrease in the breaking strength of their wounds. With the increasing use of ketorolac in surgical patients as well as the increasing use of oral NSAI drugs, more study of this effect is warranted.