gebhart/patrepeval huggingface dataset:
Arterial wall proteoglycans--Biological properties related to pathogenesis of atherosclerosis (1990)

The arterial wall is a complex organ system with respect to carbohydrate-protein macromolecules, particularly proteoglycans. Proteoglycans in the arterial wall display polydispersity and heterogeneity even in the same family. At least two major types are known: chondroitin sulphate-dermatan sulphate type and heparan sulphate type. These proteoglycans have varied biological properties, and some of these properties are implicated in the development of atherosclerosis. The chondroitin sulphate-dermatan sulphate proteoglycans are capable of forming complexes with serum low-density lipoproteins, a process conductive to lipid accumulation in the extracellular space of the arterial wall. Also, such reactions render low-density lipoprotein particles electronegative aggregates. These altered low-density lipoproteins are taken up by macrophages (and possibly by proliferative smooth muscle cells) through a high-affinity receptor pathway devoid of feedback regulation, which results in intracellular lipid accumulation and foam-cell formation, a hallmark of atherosclerosis. On the other hand, heparan sulphate proteoglycan located on the cell surface and internal elastic lamina is antithrombogenic, and facilitates binding of the lipid-clearing enzyme, lipoprotein lipase, to endothelium. Thus, chondroitin sulphate and heparan sulphate proteoglycans with divergent biological properties play a crucial role in the pathogenesis of atherosclerosis.
The proinflammatory cytokine network: interactions in the CNS and blood of rhesus monkeys (1998)

Proinflammatory cytokines [interleukin (IL)-1 and -6 and tumor necrosis factor-alpha] function within a complex network, stimulating the release of one another, as well as other cytokine agonists and antagonists. These interactions have not been as widely studied in vivo. Therefore, the following studies measured cytokines in blood and cerebrospinal fluid (CSF) from juvenile rhesus monkeys after intravenous administration of cytokines. IL-1 alpha and IL-1 beta were equally effective in elevating blood levels of IL-6. In contrast, IL-1 beta was the only cytokine that significantly elevated IL-6 levels in the CSF. Interestingly, both IL-1 and IL-6 increased levels of IL-1 receptor antagonist in the blood and comparably stimulated the release of cortisol. A second study confirmed that the IL-1-induced IL-6 in CSF was brain derived and not a result of diffusion from blood. This research extends studies of the cytokine cascade to the central nervous system (CNS), highlighting the brain response to peripheral activation.
C5a-induced expression of P-selectin in endothelial cells. (1994)

Human umbilical vein endothelial cells have recently been shown to respond to C5a with increases in intracellular Ca2+, production of D-myo-inositol 1,4,5-triphosphate and superoxide anion generation. In the current studies, C5a had been found to cause in a time- and dose-dependent manner rapid expression of endothelial P-selectin, secretion of von Willebrand factor, and adhesiveness for human neutrophils. The effects of C5a in P-selectin expression and adhesiveness of neutrophils were similar to the effects of histamine and thrombin on endothelial cells. The adhesiveness of C5a-stimulated endothelium for neutrophils was blocked by anti-P-selectin, but not by antibodies to intercellular adhesion molecule 1, E-selectin, or CD18. A cell-based ELISA technique has confirmed upregulation of P-selectin in endothelial cells exposed to C5a. Binding of C5a to endothelial cells has been demonstrated, with molecules bound being approximately 10% of those binding to neutrophils. By a reverse transcriptase-PCR technique, endothelial cells have been shown to contain mRNA for the C5a receptor. These data suggest that C5a may be an important inflammatory mediator for the early adhesive interactions between neutrophils and endothelial cells in the acute inflammatory response.
The Herpes Simplex Virus Type 2 (HG52) Variant JH2604 Has a 1488 bp Deletion which Eliminates Neurovirulence in Mice (1989)

The herpes simplex virus type 2 (HG52) deletion variant JH2604 is avirulent (LD50 greater than 10(7) p.f.u./mouse) for mice compared to the parental wild-type virus (LD50 less than 10(2) p.f.u./mouse) and fails to replicate in vivo. JH2604 has a 1488 bp deletion within the 3 kb BamHI v fragment (0 to 0.02 and 0.81 to 0.83 map units) which removes one copy of the 17 bp direct repeat DR1 element of the 'a' sequence and terminates 522 bp upstream of the 5' end of the immediate early gene 1. In vivo selection after transfection of intact JH2604 DNA with the BamHI g (v + u) joint fragment of HG52 results in the isolation of wild-type virus with an LD50 of less than 10(2) p.f.u./mouse. These results show that a 1488 bp sequence within the terminal portion of the genome long repeat region confers neurovirulence on strain HG52.
Electronic Cigarettes. Potential Harms and Benefits (2014)

Use of electronic cigarettes, devices that deliver a nicotine-containing vapor, has increased rapidly across the country and globally. Perceived and marketed as a "healthier alternative" to conventional cigarettes, few data exist regarding the safety of these devices and their efficacy in harm reduction and treatment of tobacco dependence; even less is known about their overall impact on population health. This review highlights the recent data regarding electronic cigarette toxicity, impact on lung function, and efficacy in smoking reduction and cessation. Studies show that the vapor generated from electronic cigarettes has variable amounts of nicotine and potential harmful toxins, albeit at levels lower than in conventional cigarettes. The long-term carcinogenic and lung function effects of electronic cigarettes are not known. Although some data demonstrate that electronic cigarettes may be effective in reducing conventional cigarette consumption, there are no data demonstrating the efficacy of electronic cigarettes as a tool to achieve cessation. Until robust longitudinal evaluations demonstrate the safety of electronic cigarettes and efficacy in treatment of tobacco dependence, their role as a harm reduction tool is unclear.
Therapy of neuroendocrine tumors with radiolabeled somatostatin-analogues. (1999)

Radionuclide therapy with octreotide-derivatives is feasible, both with 111In and 90Y as radionuclides.
Lipid interactions with bacterial channels: fluorescence studies (2005)

Interactions between a membrane protein and the lipid molecules that surround it in the membrane are important in determining the structure and function of the protein. These interactions can be pictured at the molecular level using fluorescence spectroscopy, making use of the ability to introduce tryptophan residues into regions of interest in bacterial membrane proteins. Fluorescence quenching methods have been developed to study lipid binding separately on the two sides of the membrane. Lipid binding to the surface of the mechanosensitive channel MscL is heterogeneous, with a hot-spot for binding anionic lipid on the cytoplasmic side, associated with a cluster of three positively charged residues. The environmental sensitivity of tryptophan fluorescence emission has been used to identify the residues at the ends of the hydrophobic core of the second transmembrane alpha-helix in MscL. The efficiency of hydrophobic matching between MscL and the surrounding lipid bilayer is high. Fluorescence quenching methods can also be used to study binding of lipids to non-annular sites such as those between monomers in the homotetrameric potassium channel KcsA.
Facilitating data transfer and improving precision in capillary zone electrophoresis with migration indexes (1991)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTFacilitating data transfer and improving precision in capillary zone electrophoresis with migration indexesThomas T. Lee and Edward S. YeungCite this: Anal. Chem. 1991, 63, 24, 2842–2848Publication Date (Print):December 15, 1991Publication History Published online1 May 2002Published inissue 15 December 1991https://pubs.acs.org/doi/10.1021/ac00024a007https://doi.org/10.1021/ac00024a007research-articleACS PublicationsRequest reuse permissionsArticle Views108Altmetric-Citations39LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Acute Hypoxia Enhances Spontaneous Lymph Node Metastasis in an Orthotopic Murine Model of Human Cervical Carcinoma (2004)

An orthotopic mouse model of cervical carcinoma has been used to investigate the relationship between acute (cyclic) hypoxia and spontaneous lymph node metastasis in vivo. The human cervical carcinoma cell line ME-180 was stably transfected to express the fluorescent protein DsRed2, which allowed the in vivo optical monitoring of tumor growth and metastasis by fluorescent microscopy. The surgically implanted primary tumors metastasize initially to local lymph nodes and later to lung, a pattern consistent with the clinical course of the disease. The effect of acute hypoxia on the growth and spread of these tumors was examined by exposing tumor-bearing mice to treatment consisting of exposure to 12 cycles of 10 min 7% O(2) followed by 10 min air (total 4 h) daily during tumor growth. After 21 days, the tumors were excised, lymph node and lung metastases were quantified, and the hypoxic fraction and relative vascular area of the primary tumors were assessed by immunohistochemical staining for the hypoxic marker drug EF5 [2-(2-nitro-1H-imidazole-1-yl)-N-(2,2,3,3,3-pentafluoropropyl) acetamide] and the vascular marker CD31, respectively. In untreated mice, the primary tumor size was directly correlated with lymph node metastatic burden. The acute hypoxia treatment resulted in a significant decrease in the size of the primary tumors at the time of excision. However, the mice in the acute hypoxia group had an increased number of positive lymph nodes (2-4) as compared with control mice (1-3). Lung metastasis was not affected. The acute hypoxia treatment also decreased the relative vascular area in the primary tumors but did not affect the hypoxic fraction. These results suggest that fluctuating oxygenation in cervical carcinoma tumors may reduce tumor growth rate, but it may also enhance the ability of tumor cells to metastasize to local lymph nodes.
Phytozome: a comparative platform for green plant genomics (2011)

The number of sequenced plant genomes and associated genomic resources is growing rapidly with the advent of both an increased focus on plant genomics from funding agencies, and the application of inexpensive next generation sequencing. To interact with this increasing body of data, we have developed Phytozome (http://www.phytozome.net), a comparative hub for plant genome and gene family data and analysis. Phytozome provides a view of the evolutionary history of every plant gene at the level of sequence, gene structure, gene family and genome organization, while at the same time providing access to the sequences and functional annotations of a growing number (currently 25) of complete plant genomes, including all the land plants and selected algae sequenced at the Joint Genome Institute, as well as selected species sequenced elsewhere. Through a comprehensive plant genome database and web portal, these data and analyses are available to the broader plant science research community, providing powerful comparative genomics tools that help to link model systems with other plants of economic and ecological importance.
EL ETERNO RETORNO DE LA DIFERENCIA. ELEMENTOS PARA UNA CRÍTICA DE LA METAFÍSICA OCCIDENTAL A PARTIR DE LAS FILOSOFÍAS DE HEIDEGGER, NIETZSCHE Y DELEUZE (2014)

En el presente artículo nos proponemos delimitar la metafísica occidental como onto-teología desde de la lectura de Heidegger y su vinculación con la cuestión del nihilismo a partir de la sentencia de Nietzsche “Dios ha muerto” para mostrar, luego, cómo Deleuze, también apoyado en la filosofía nietzscheana, postula una filosofía de la inmanencia y la diferencia de fuerzas como alternativa a un modo de pensar nihilista, reelaborando nociones claves de la filosofía nietzscheana, como fuerza, devenir, voluntad, eterno retorno y diferencia.
Inhibition of Bladder Tumor Growth by 1,1-Bis(3′-Indolyl)-1-(p-Substitutedphenyl)Methanes: A New Class of Peroxisome Proliferator-Activated Receptor γ Agonists (2006)

1,1-Bis(3'-indolyl)-1-(p-substitutedphenyl)methanes containing p-trifluoromethyl (DIM-C-pPhCF3), p-t-butyl (DIM-C-pPhtBu), and phenyl (DIM-C-pPhC6H5) substituents have been identified as a new class of peroxisome proliferator-activated receptor gamma (PPARgamma) agonists that exhibit antitumorigenic activity. The PPARgamma-active C-DIMs have not previously been studied against bladder cancer. We investigated the effects of the PPARgamma-active C-DIMs on bladder cancer cells in vitro and bladder tumors in vivo. In this study, the PPARgamma-active compounds inhibited the proliferation of KU7 and 253J-BV bladder cancer cells, and the corresponding IC50 values were 5 to 10 and 1 to 5 micromol/L, respectively. In the less responsive KU7 cells, the PPARgamma agonists induced caveolin-1 and p21 expression but no changes in cyclin D1 or p27; in 253J-BV cells, the PPARgamma agonists did not affect caveolin-1, cyclin D1, or p27 expression but induced p21 protein. In KU7 cells, induction of caveolin-1 by each of the PPARgamma agonists was significantly down-regulated after cotreatment with the PPARgamma antagonist GW9662. DIM-C-pPhCF3 (60 mg/kg thrice a week for 4 weeks) inhibited the growth of implanted KU7 orthotopic and s.c. tumors by 32% and 60%, respectively, and produced a corresponding decrease in proliferation index. Treatment of KU7 cells with DIM-C-pPhCF3 also elevated caveolin-1 expression by 25% to 30%, suggesting a role for this protein in mediating the antitumorigenic activity of DIM-C-pPhCF3 in bladder cancer.
Staging of regional lymph nodes in melanoma patients by means of 99mTc-MIBI scintigraphy. (2003)

(99m)Tc-MIBI scanning may have a secondary role in the staging of regional lymph nodes in patients with clinically localized melanoma who are not good candidates for sentinel node biopsy.
VCO jitter simulation and its comparison with measurement (1999)

We have simulated the phase noise of a voltage controlled oscillator (VCO) using an RF circuit simulator, SpectreRF/sup TM/. This simulator uses a variation of the periodic noise analysis first proposed by Okumura, et al (1993). It computes the power spectral density of the noise as a function of frequency. By assuming that only white noise sources are present in the oscillator, it is possible to derive a simple relationship between the level of the phase noise and the jitter. This excludes flicker noise from consideration, however, since flicker noise is a low-frequency phenomenon, excluding it only affects the accuracy of the long-term jitter. We compared the jitter with measurement and found the error to be less than 2 dB. An AHDL model for the VCO that efficiently exhibits jitter in the time domain is included. The model was written in Verilog-A. This model can be used to determine the affect of VCO jitter on a larger system, such as a phase-locked loop (PLL).
Genetics and biology of Arabidopsis brassinosteroid dwarf mutants (1997)

Brassinosteroids (BRs) have long been known to be effective in plant growth promotion. However, definitive evidence of BR's role in growth stimulation has remained unclear. Recently, genetic approaches using BR-deficient dwarf(dwf) mutants have begun to unravel the role of BRs in plant growth and development. BR dwarf mutants are characterized by multiple growth alterations: robust stem, reduced fertility, prolonged life cycle, dark-green appearance, round and curled leaves, and when grown in the dark, short hypocotyls and expanded cotyledons. Genetic analysis of the dwf mutants defined eight independent genetic loci defective in BR biosynthesis or perception. Allelism tests with previously reported genes revealed that d̲i̲m̲inuto 1 (dim1) was an allele of dwf1, and dwf2, dwf3, and dwf6 are allelic to b̲r̲assinosteroid i̲nsensitive (bri), c̲onstitutive p̲hotomorphogenesis and d̲warfism (cpd), and d̲e̲-e̲t̲iolated2 (det2), respectively. dwf4, dwf5, dwf7, and dwf8 were found to be novel and are the focus of this research. Anatomical analysis demonstrates that a reduction in cell length causes dwarf phenotype. Dwarfism was rescued by exogenous application of BRs. Feeding studies utilizing BR biosynthetic intermediates were employed to identify defective steps of BR biosynthesis in each of these dwarf mutants. dwf4 mutants were rescued only by 22α hydroxylated BRs, suggesting that the 22α hydroxylation reactions, putative rate-determining steps, are blocked. In fact, DWF4 has been cloned and shown to encode a cytochrome P450 steroid hydroxylase. Feeding studies also showed that dwf8 plants are rescued only by intermediates after 3 dehydrogenation reactions, indicating that the 3-dehydrogenase is defective in dwf8 plants. Gas Chromatography-Selective Ion Monitoring (GC-SIM) analysis of endogenous BRs in dwf5 plants showed that the level of 24-methylene cholesterol is greatly diminished as compared to wild type, suggesting that the biochemical defect occurs before 24-methylene cholesterol. Similar to dwf5, the biosynthetic defect in dwf7 is also shown to be in a step before 24-methylene cholesterol. The pleiotropic phenotypes in these dwf mutants due to biochemical defects in BR biosynthesis suggests that BRs are essential for proper growth and development of plants.
Discovery and preclinical characterization of the antagonist anti-PD-L1 monoclonal antibody LY3300054 (2018)

LY3300054 is currently being evaluated in phase I clinical trials for oncology indications.
The Intel i860 64-bit processor: a general-purpose CPU with 3D graphics capabilities (1989)

A description is given of the Intel i860 processor, which was designed for use in low-cost 3D graphics workstations. These products need high performance to support the operating system, simulations, transforms, and shading calculations. The integer unit provides high performance for Unix and other operating systems, the floating-point unit provides high throughput for computationally intensive applications and the processor includes 3D graphics hardware. The sustained high computation rates are supported by on-chip caches. The processor is supported by compilers and other development tools. The i860 processor will enable cost-effective interactive scientific visualization. This includes not only the numeric computation and 3D matrix transforms but also the pixel-intensive shading calculations that normally are either very costly or very slow. Integrating all these capabilities into one component allows design of a desktop unit or a single add-in card for existing personal computers.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
<title>Whole blood and RBC sedimentation and aggregation study using OCT</title> (2001)

The concept of refractive index matching used for the enhancement of optical penetration depth of the whole blood is discussed on the basis of in vitro studies using NIR optical coherence tomography technique. It was found that blood optical clearing is defined not only by refractive index matching effect, but also by changes of RBC size and their aggregation ability when chemicals are added. For example, for whole blood twice diluted by a saline adding of 6.5% of glycerol reduces the total attenuation coefficient from 4.2 mm<SUP>-1</SUP> to 2.0 mm<SUP>-1</SUP>, and correspondingly increases the optical penetration at 820 nm up to 117%. For other tested agents (glucose, dextrans, propylene glycol, and trazograph) the enhancement of penetration was from about 20% up to 77%. In blood sedimentation study the regular or irregular oscillations or jumps of the RBC/plasma boundary were observed. The one- minute time period of regular oscillations well correlates with the kinetics of the aggregation process, described by the two subsequent stages of formation of the linear and 3D aggregates.
SYNTHESIS OF 1-SUBSTITUTED 2-(2S)-2-PYRROLIDINYL FROM L-PROLINE (1990)

The synthesis of optically active 2-[(2S)-2-pyrrolidinyl]pyridine from L-proline is reported. This compound can be further alkylated to give the corresponding N-methyl and N-benzylpyrrolidinyl derivatives
Performance of Applied Biosystems ViroSeq HIV-1 Genotyping System for Sequence-Based Analysis of Non-Subtype B Human Immunodeficiency Virus Type 1 from Uganda (2001)

The Applied Biosystems ViroSeq HIV-1 Genotyping System is a commercially available, integrated system for sequence-based analysis of drug resistance mutations in human immunodeficiency virus type 1 (HIV-1) protease and reverse transcriptase (RT). We evaluated the performance of this system for analysis of non-subtype B HIV-1 by analyzing plasma samples from Ugandan women and infants. Plasma samples were obtained from 105 women and 25 infants enrolled in a Ugandan clinical trial. HIV-1 analysis was performed with the ViroSeq system according to the manufacturer's instructions, except that the volume of plasma used for analysis was less than the recommended 0.5 ml for some samples. Viral loads ranged from 2,313 to 2,336,400 copies/ml. PCR products suitable for sequencing were amplified from all samples tested. Complete sequences for protease (amino acids 1 to 99) and RT (amino acids 1 to 320) were obtained for 102 of 105 (97%) of the maternal samples tested and all 25 of the infant samples tested. Complete double-stranded sequences were obtained for 90 of 105 (86%) of the maternal samples tested and 22 of 25 (88%) of the infant samples tested. The sequences obtained with this system were used for HIV-1 subtyping. The subtypes identified were A, C, D, and A/D recombinant HIV-1. The performances of the seven sequencing primers were similar for the subtypes examined. The ViroSeq system performs well for analysis of Ugandan plasma samples with subtypes A, C, D, and A/D recombinant HIV-1. The availability of this genotyping system should facilitate studies of HIV-1 drug resistance in countries where these subtypes are prevalent.
Shot Boundary Detection Method for News Video (2013)

It is very important to detect shot boundary accurately and quickly in a large number of news video data. Therefore, we proposed a new method with dual-detection model. The method is divided into two stages, i.e. pre-detection and re-detection. In the pre-detection stage, the uneven blocked differences based on the feature of human vision are presented and used in adaptive binary search to detect shot boundaries. In the re-detection round, Speeded Up Robust Features (SURF) method is applied to exclude false detections. The experimental results show that this method can detect abrupt boundaries of news video quickly and accurately.