gebhart/patrepeval huggingface dataset:
Molecular Cloning and Characterization of the Glucoamylase Gene of Aspergillus awamori (1984)

The filamentous ascomycete Aspergillus awamori secretes large amounts of glucoamylase upon growth in medium containing starch, glucose, or a variety of hexose sugars and sugar polymers. We examined the mechanism of this carbon source-dependent regulation of glucoamylase accumulation and found a several hundredfold increase in glucoamylase mRNA in cells grown on an inducing substrate, starch, relative to cells grown on a noninducing substrate, xylose. We postulate that induction of glucoamylase synthesis is regulated transcriptionally. Comparing total mRNA from cells grown on starch and xylose, we were able to identify an inducible 2.3-kilobase mRNA-encoding glucoamylase. The glucoamylase mRNA was purified and used to identify a molecularly cloned 3.4-kilobase EcoRI fragment containing the A. awamori glucoamylase gene. Comparison of the nucleotide sequence of the 3.4-kilobase EcoRI fragment with that of the glucoamylase I mRNA (as determined from molecularly cloned cDNA) revealed the existence of four intervening sequences within the glucoamylase gene. The 5' end of the glucoamylase mRNA was mapped to several locations within a region -52 to -73 nucleotides from the translational start. Sequence and structural features of the glucoamylase gene of the filamentous ascomycete A. awamori were examined and compared with those reported in genes of other eucaryotes.
Dexamethasone regulation of glycosaminoglycan synthesis in cultured human skin fibroblasts. Similar effects of glucocorticoid and thyroid hormones. (1984)

The effects of dexamethasone on glycosaminoglycan accumulation were examined in confluent human skin fibroblasts in vitro. The glucocorticoid consistently inhibited the incorporation of either [3H]acetate or [3H]glucosamine into hyaluronate when added to culture medium 72 h before harvest. This effect was half-maximal at approximately 1 nM and maximal at 5-10 nM. Inhibition occurred within 5 h of hormone addition and was near maximal by 25 h. 11 alpha-hydrocortisone (10 nM), deoxycorticosterone (10 nM), and progesterone (100 nM) failed to inhibit this accumulation; however, progesterone (2 microM), a known glucocorticoid antagonist at high concentration, could attenuate the response to dexamethasone by 57%. Cultures were pulse-labeled and then chase incubated for up to 68 h. No difference in the rate of [3H]hyaluronate degradation could be demonstrated in steroid-treated cultures. Triiodothyronine (T3) can also inhibit synthesis of hyaluronate in fibroblasts (Smith, T. J., Y. Murata, A. L. Horwitz, L. Philipson, and S. Refetoff, 1982, J. Clin. Invest., 70:1066-1073). Both T3 and dexamethasone could inhibit glycosaminoglycan accumulation in a dose-dependent manner. Maximal T3 effects were achieved at 1 nM and those of dexamethasone at 10 nM. Saturating concentrations of T3 and dexamethasone added alone inhibited [3H]hyaluronate by 54 and 49%, respectively. When both hormones were added, accumulation was inhibited by 84%. Dexamethasone inhibits [3H]hyaluronate accumulation in a time, dose-dependent, and stereo-specific manner. The rate of glycosaminoglycan degradation was unaffected, and thus, the steroid inhibited the rate of macromolecular synthesis. This effect was likely mediated through glucocorticoid receptors. Hyaluronate synthesis in skin fibroblasts appears to be regulated by both glucocorticoids and T3 through different pathways.
Research on the Backup Mechanism of Oracle Database (2009)

On the basis of the current database backup mechanism research, according to requirements of various enterprises. In this paper the mechanisms which contain integrated and reasonable backup methods are presented and implemented. The mechanisms can decrease the risk of losing the meta-data related to enterprise application when database encounters unpredicted problems and also have very little influence on performance and available of oracle database when backup operations are proceeding.
Automatic three‐dimensional correlation of CT‐CT, CT‐MRI, and CT‐SPECT using chamfer matching (1994)

Image correlation is often required to utilize the complementary information in CT, MRI, and SPECT. A practical method for automatic image correlation in three-dimensions (3D) based on chamfer matching is described. The method starts with automatic extraction of contour points in one modality and automatic segmentation of the corresponding feature in the other modality. A distance transform is applied to the segmented volume and a cost function is defined that operates between the contour points and the distance transform. Matching is performed by iteratively optimizing the cost function for 3D translation, rotation, and scaling of the contour points. The complete matching process including segmentation requires no user interaction and takes about 100 s on an HP715/50 workstation. Perturbation tests on clinical data with cost functions based on mean, rms, and maximum distances in combination with two general purpose optimization procedures have been performed. The performance of the methods has been quantified in terms of accuracy, capture range, and reliability. The best results on clinical data are obtained with the cost function based on the mean distance and the simplex optimization method. The accuracy is 0.3 mm for CT-CT, 1.0 mm for CT-MRI, and 0.7 mm for CT-SPECT correlation of the head. The accuracy is usually at subpixel level but is limited by global geometric distortions, e.g., for CT-MRI correlation. Both for CT-CT and CT-MRI correlation the capture range is about 6 cm, which is higher than normal differences in patient setup found on the scanners (less than 4 cm). This means that the correlation procedure seldom fails (better than 98% reliability) and user interaction is unnecessary. For CT-SPECT matching the capture range is about 3 cm (80% reliability), and must be further improved. The method has already been introduced in clinical practice.
Superposition coding and linear network coding for reliable multicast over fading channels (2008)

In many military applications, communication messages must be multicast to a group of receivers. When these transmissions are broadcast over a wireless channel, fading can result in the messages only being received by a subset of the intended receivers on any given transmission. The conventional approach of retransmission via automatic repeat request (ARQ) results in the performance being dominated by the single receiver that experiences the worst propagation conditions for each broadcast packet. Recently, it has been shown that linear network coding can be used to reduce the average number of transmissions required to deliver the multicast message by making it possible for a receiver to recover B packets that are coded together after correctly receiving any B transmissions. In this paper, we propose to further improve the performance by taking advantage of the diversity of fading gains that can exist during each message transmission. During each transmission, superposition coding (SPC) is used to simultaneously transmit multiple linear network-coded versions of the packets. The number of copies that a particular receiver can recover depends on the receiver’s fading process: the better the channel conditions, the more copies of the network-coded packet can be recovered. We show that by appropriately choosing the parameters of the SPC, the average number of transmissions can be reduced in comparison to previous approaches in some scenarios.
FlowField and beyond: applying pressure-sensitive multi-point touchpad interaction (2003)

In this paper, we discuss a new hand-gesture-based application, FIowField, which explores the use of pressure-sensitive multi-point touchpad (multi-touch) interaction. FIowField allows participants to interact using their whole hand with a flow of circulating particles, providing visual and auditory feedback. Limitations of the raw data mapping used in FIowField motivated work on applying interpolation techniques to improve the data representation. Thus far, bicubic interpolation provides the most effective method for initial processing. We observed two factors limiting the quality of the representation: the spacing of the sensors, and the pressure-distributing property of the touchpad surface.
Network architecture for a topological quantum computer in silicon (2018)

Abstract A design for a large-scale surface code quantum processor based on a node/network approach is introduced for semiconductor quantum dot spin qubits. The minimal node contains only seven quantum dots, and nodes are separated on the micron scale, creating useful space for wiring interconnects and integration of conventional transistor circuits. Entanglement is distributed between neighbouring nodes by loading spin singlets locally and then shuttling one member of the pair through a linear array of empty dots. A node contains one data qubit, two ancilla qubits, and additional dots to facilitate electron shuttling and measurement of the ancillas. A four-node GHZ state is realized by sharing three internode singlets followed by local gate operations and ancilla measurements. Further local operations produce an X or Z stabilizer on the four data qubits, which is the fundamental operation of the surface code. Electron shuttling is simulated in the single-valley case using a simple gate electrode geometry without explicit barrier gates, and demonstrates that adiabatic transport is possible on timescales that do not present a speed bottleneck to the processor. An important shuttling error in a clean system is uncontrolled phase rotation of the spin due to modulation of the electronic g -factor during transport, owing to the Stark effect. This error can be reduced by appropriate electrostatic tuning of the stationary electron’s g -factor. While these simulations are unrealistic in neglecting spin–orbit, valley and decoherence effects, they are realistic with respect to the gate-induced potential landscape and are a first step towards more realistic modelling. Using reasonable noise models, we estimate error thresholds with respect to single and two-qubit gate fidelities as well as singlet dephasing errors during shuttling. A twirling protocol transforms the non-Pauli noise associated with exchange gate operations into Pauli noise, making it possible to use the Gottesman–Knill theorem to efficiently simulate large codes.
CD146 is a coreceptor for VEGFR-2 in tumor angiogenesis (2012)

CD146 is a novel endothelial biomarker and plays an essential role in angiogenesis; however, its role in the molecular mechanism underlying angiogenesis remains poorly understood. In the present study, we show that CD146 interacts directly with VEGFR-2 on endothelial cells and at the molecular level and identify the structural basis of CD146 binding to VEGFR-2. In addition, we show that CD146 is required in VEGF-induced VEGFR-2 phosphorylation, AKT/p38 MAPKs/NF-κB activation, and thus promotion of endothelial cell migration and microvascular formation. Furthermore, we show that anti-CD146 AA98 or CD146 siRNA abrogates all VEGFR-2 activation induced by VEGF. An in vivo angiogenesis assay showed that VEGF-promoted microvascular formation was impaired in the endothelial conditional knockout of CD146 (CD146(EC-KO)). Our animal experiments demonstrated that anti-CD146 (AA98) and anti-VEGF (bevacizumab) have an additive inhibitory effect on xenografted human pancreatic and melanoma tumors. The results of the present study suggest that CD146 is a new coreceptor for VEGFR-2 and is therefore a promising target for blocking tumor-related angiogenesis.
1,6-Aminosuberic acid analogs of lysine- and arginine-vasopressin and -vasotocin. Synthesis and biological properties (1972)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXT1,6-Aminosuberic acid analogs of lysine- and arginine-vasopressin and -vasotocin. Synthesis and biological propertiesSatoe Hase, S. Sakakibara, M. Wahrenburg, M. Kirchberger, I. L. Schwartz, and Roderich WalterCite this: J. Am. Chem. Soc. 1972, 94, 10, 3590–3600Publication Date (Print):May 1, 1972Publication History Published online1 May 2002Published inissue 1 May 1972https://pubs.acs.org/doi/10.1021/ja00765a056https://doi.org/10.1021/ja00765a056research-articleACS PublicationsRequest reuse permissionsArticle Views105Altmetric-Citations35LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Lighting the local area: optical code-division multiple access and quality of service provisioning (2000)

Asynchronous, high-speed multiple-access is proposed as a natural solution to achieving asynchronous, high-speed connectivity in a local area network environment. Optical CDMA is shown to be competitive with other networking technologies such as WDMA and TDMA, but has the benefit of more flexibility, simpler protocols, and no need for centralized network control. The limitations of one-dimensional optical orthogonal codes for CDMA have motivated the idea of spectral spreading in both the temporal and wavelength domains. If the constraints on constant weight in these two-dimensional codes are relaxed, differentiated levels of service at the physical layer become possible. Areas for further research are suggested which may allow quality of service levels to be guaranteed at the physical layer.
Neutrophil elastase in respiratory epithelial lining fluid of individuals with cystic fibrosis induces interleukin-8 gene expression in a human bronchial epithelial cell line. (1992)

The respiratory manifestations of cystic fibrosis (CF) are characterized by neutrophil-dominated airway inflammation. Since a variety of inflammatory stimuli are capable of inducing bronchial epithelial cells to express the gene for IL-8, a cytokine that attracts and activates neutrophils, mediators in respiratory epithelial lining fluid (ELF) of CF individuals might induce IL-8 production by epithelial cells, thus recruiting neutrophils to the airways. BET-1A human bronchial epithelial cells at rest or incubated with normal ELF showed little IL-8 gene expression, but after incubation with CF ELF, a marked increase in IL-8 transcript levels was observed. CF ELF contained high levels of neutrophil elastase (NE) and various serine protease inhibitors prevented CF ELF from inducing IL-8 gene expression in BET-1A cells, suggesting that NE was the dominant inducer for IL-8 production in CF ELF. The addition of purified NE caused BET-1A cells to increase IL-8 gene transcription with accumulation of mRNA transcripts and to release IL-8-like neutrophil chemotactic activity. These observations suggest a self-perpetuating inflammatory process on the CF bronchial surface where NE released by neutrophils induced the bronchial epithelium to secrete IL-8, which in turn recruits additional neutrophils to the bronchial surface.
Rapid diagnosis of rotavirus infection by direct detection of viral nucleic acid in silver-stained polyacrylamide gels (1982)

A rapid simple technique for the diagnosis of rotavirus has been developed based on the sensitive detection of rotavirus double-stranded RNA genome segments separated in polyacrylamide gels. The method utilizes a recently described ultrasensitive silver stain for polypeptides, which can also detect subnanogram amounts of nucleic acid. The sensitivity of the technique is comparable with that of electron microscopy or enzyme-linked immunosorbent assay.
Effect of breast-feeding on plasma cholesterol and weight in young adults. (1980)

The relation between breast-feeding and plasma cholesterol level in adult life was examined in a longitudinal study of a sample of people born in 1946. One hundred and seventy-two subjects whose breast-feeding history had been recorded during infancy were examined when they were 32 years old. Women who had been breast-fed had significantly lower mean plasma cholesterol than women who had been bottle-fed (5.4 mmol/l compared with 5.9 mmol/l). For men the difference was smaller and not significant. An unexpected finding was the higher mean weight and skinfold thickness in men who had been breast-fed. These results support the hypothesis that factors acting very early in life affect the risk of disease in adults.
Virtual Environments (2006)

Interactive computing has evolved through the years from cryptic command-based interfaces to a collection of task-based applications to ecologically valid immersive environments, each advance dissolving more of the barrier between users and their desired actions. Current virtual environments applications are primarily intriguing visual and auditory experiences, with a smaller number incorporating additional sensory modalities, such as haptics and smell. These worlds are driven by hardware, which provides the hosting platform and multimodal presentation, allows for physical interaction, and tracks the whereabouts of users as they traverse the virtual world and software to model and generate the virtual world and their autonomous agents and support communication networks that link multiple users. With the rapidly advancing ability to generate complex and large-scale virtual worlds, hardware advances in multimodal input/output (I/O) devices, tracking systems, and interaction techniques are needed to support generation of increasingly engaging virtual worlds.
Adenylate Cyclase Toxin (ACT) fromBordetella hinzii: Characterization and Differences from ACT ofBordetella pertussis (2005)

Bordetella hinzii is a commensal respiratory microorganism in poultry but is increasingly being recognized as an opportunistic pathogen in immunocompromised humans. Although associated with a variety of disease states, practically nothing is known about the mechanisms employed by this bacterium. In this study, we show by DNA sequencing and reverse transcription-PCR that both commensal and clinical strains of B. hinzii possess and transcriptionally express cyaA, the gene encoding adenylate cyclase toxin (ACT) in other pathogenic Bordetella species. By Western blotting, we also found that B. hinzii produces full-length ACT protein in quantities that are comparable to those made by B. pertussis. In contrast to B. pertussis ACT, however, ACT from B. hinzii is less extractable from whole bacteria, nonhemolytic, has a 50-fold reduction in adenylate cyclase activity, and is unable to elevate cyclic AMP levels in host macrophages (nontoxic). The decrease in enzymatic activity is attributable, at least in part, to a decreased binding affinity of B. hinzii ACT for calmodulin, the eukaryotic activator of B. pertussis ACT. In addition, we demonstrate that the lack of intoxication by B. hinzii ACT may be due to the absence of expression of cyaC, the gene encoding the accessory protein required for the acylation of B. pertussis ACT. These results demonstrate the expression of ACT by B. hinzii and represent the first characterization of a potential virulence factor of this organism.
Nefazodone for Chronic Daily Headache Prophylaxis: An Open‐Label Study (2001)

These results provide preliminary support for the efficacy of nefazodone in the prophylaxis of chronic daily headache. In this sample, nefazodone was safe and generally well tolerated. Patient ratings of sexual function improved over the course of treatment, in contrast to what is generally observed with most antidepressants. Nefazodone may be particularly beneficial for patients with chronic daily headache and comorbid depression. Further research is indicated.
A ceramide analog inhibits T cell proliferative response through inhibition of glycosphingolipid synthesis and enhancement of N,N-dimethylsphingosine synthesis (1990)

The ceramide analogue 1-phenyl-2-(decanoylamino)-3-morpholino-1-propanol (PDMP) (particularly the D-threo isomer, D-PDMP) caused inhibition of cell growth in some types of cells, and this growth-inhibitory effect has been attributed to inhibition of UDP-Glc:Cer beta-Glc transferase, resulting in reduced glycolipid synthesis and increased free ceramide [Inokuch, J., & Radin, N. S. (1987) J. Lipid Res. 28, 565-571; Okada, Y., et al. (1988) FEBS Lett. 235, 25-29]. In view of increasing evidence that the T cell proliferative immune response is modulated by glycosphingolipids (GSLs), the reagent D-PDMP was used to evaluate the role of GSLs in this respect. Con A induced or PHA-induced mitogenesis of C3H/HeJ mouse splenocytes, as well as IL2-dependent CTLL cell growth, were strongly inhibited in a dose-dependent manner when cells were preincubated in the presence of 5-10 microM D-PDMP, but not with its stereoisomer L-PDMP. Closely associated with this growth-inhibitory effect in the presence of D-PDMP, levels of essentially all GSLs, including GM3 and other gangliosides, were greatly reduced, whereas ceramide accumulated. Importantly, metabolically labeled radioactive bands, corresponding to free sphingosine and N-monomethylsphingosine, were found to be present in very small quantities (5-12%) relative to the band corresponding to N,N-dimethylsphingosine (DMS), which showed significant accumulation in D-PDMP-treated lymphocytes. The quantity of IL2 receptors and their affinity to IL2 on T cells did not change, but IL2-dependent tyrosine phosphorylation was greatly stimulated, following D-PDMP treatment.(ABSTRACT TRUNCATED AT 250 WORDS)
Significance of bursa of Fabricius as target organ in infectious bursal disease of chickens (1980)

The highly virulent strain Cu-1 of infectious bursal disease virus caused 100% mortality in 4-week-old specific pathogen-free chickens. In contrast, chickens infected after bursectomy did not become sick and only showed some discrete and transient necrosis in lymphatic tissues. However, these chickens contained infectious virus and, subsequently, produced specific antibodies. The virus concentrations in the organs studied reached their maximum 2 days postinfection, but were about 1,000 times lower in non-bursectomized animals. It may be assumed that in bursectomized chickens the early events of infection are the same as in non-bursectomized ones. Virus is spread in varius organs, but due to the absence of a sufficient number of susceptible cells, virus multiplication is moderate and can be kept in check by the host defense mechanism. With the occurrence of circulating specific antibodies the virus can be rapidly eliminated. The studies particularly stress that the availability of a large number of highly susceptible cells is a crucial point in acute viral infections.