gebhart/patrepeval huggingface dataset:
Catalytic conversion of biomass to biofuels (2010)

Biomass has received considerable attention as a sustainable feedstock that can replace diminishing fossil fuels for the production of energy, especially for the transportation sector. The overall strategy in the production of hydrocarbon fuels from biomass is (i) to reduce the substantial oxygen content of the parent feedstock to improve energy density and (ii) to create C–C bonds between biomass-derived intermediates to increase the molecular weight of the final hydrocarbon product. We begin this review with a brief overview of first-generation biofuels, specifically bioethanol and biodiesel. We consider the implications of utilizing starchy and triglyceride feedstocks from traditional food crops, and we provide an overview of second-generation technologies to process the major constituents of more abundant lignocellulosic biomass, such as thermochemical routes (gasification, pyrolysis, liquefaction) which directly process whole lignocellulose to upgradeable platforms (e.g., synthesis gas and bio-oil). The primary focus of this review is an overview of catalytic strategies to produce biofuels from aqueous solutions of carbohydrates, which are isolated through biomass pretreatment and hydrolysis. Although hydrolysis-based platforms are associated with higher upstream costs arising from pretreatment and hydrolysis, the aqueous solutions of biomass-derived compounds can be processed selectively to yield hydrocarbons with targeted molecular weights and structures. For example, sugars can be used as reforming feedstocks for the production of renewable hydrogen, or they can be dehydrated to yield furfurals or levulinic acid. For each of the platforms discussed, we have suggested relevant strategies for the formation of C–C bonds, such as aldol condensation of ketones and oligomerization of alkenes, to enable the production of gasoline, jet, and Diesel fuel range hydrocarbons. Finally, we address the importance of hydrogen in biorefining and discuss strategies for managing its consumption to ensure independence from fossil fuels.
Inhibition of Neutrophil Apoptosis by Antioxidants in Culture Medium (1997)

Neutrophil apoptosis is an important mechanism that has implications for understanding the life span and toxic potentials of neutrophils at inflamed sights. In this study the authors examined the possibility that reactive oxygen species (ROS) released by neutrophils can regulate neutrophil survival. Cu,Zn-superoxide dismutase (Cu,Zn-SOD), Mn-SOD, and catalase in culture media were significantly effective in delaying the spontaneous apoptosis, suggesting that ROS play an important role in the resolution of inflammation by inducing neutrophil apoptosis. In this experiment, boiled Cu,Zn-SOD had no effect on inhibiting the apoptosis, but boiled Mn-SOD from Bacillus stearothermophilus was more effective in inhibiting the apoptosis than untreated Mn-SOD at the same dose. However, the boiled Mn-SOD showed only 80% of O2- inhibitable activity compared with the untreated Mn-SOD. This effect may be attributed to the partial liberation of manganese because MnCl2 inhibited the apoptosis effectively. Furthermore, Cu,Zn-SOD was effective in delaying apoptosis only when added to the culture within the first 3 h of incubation, suggesting that the isolation of neutrophils from peripheral blood enhances apoptosis of neutrophils.
An introduction to turbulent flow (2001)

Most natural and industrial flows are turbulent. The atmosphere and oceans, automobile and aircraft engines, all provide examples of this ubiquitous phenomenon. In recent years, turbulence has become a very lively area of scientific research and application, attracting many newcomers who need a basic introduction to the subject. An Introduction to Turbulent Flow, first published in 2000, offers a solid grounding in the subject of turbulence, developing both physical insight and the mathematical framework needed to express the theory. It begins with a review of the physical nature of turbulence, statistical tools, and space and time scales of turbulence. Basic theory is presented next, illustrated by examples of simple turbulent flows and developed through classical models of jets, wakes, and boundary layers. A deeper understanding of turbulence dynamics is provided by spectral analysis and its applications. The final chapter introduces the numerical simulation of turbulent flows. This well-balanced text will interest graduate students in engineering, applied mathematics, and the physical sciences.
Titanium isopropoxide-mediated nucleophilic openings of 2,3-epoxy alcohols. A mild procedure for regioselective ring-opening (1985)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTTitanium isopropoxide-mediated nucleophilic openings of 2,3-epoxy alcohols. A mild procedure for regioselective ring-openingMaurice Caron and K. B. SharplessCite this: J. Org. Chem. 1985, 50, 9, 1557–1560Publication Date (Print):May 1, 1985Publication History Published online1 May 2002Published inissue 1 May 1985https://pubs.acs.org/doi/10.1021/jo00209a047https://doi.org/10.1021/jo00209a047research-articleACS PublicationsRequest reuse permissionsArticle Views4290Altmetric-Citations435LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (1)»Supporting Information Supporting Information Get e-Alerts
NEURAL STEM CELLS AND ARMED DERIVATIVES: FATE AND THERAPEUTIC POTENTIAL IN THE BRAIN (2006)

The ability of neural stem cells (NSCs) to home to diseased areas of the brain and their capacity to differentiate into all neural phenotypes provides a powerful tool for the treatment of both diffuse and localized neurologic/oncogenic disorders. NSCs are the most immature neural precursor cells in the nervous system and are defined by their ability to self-renew by symmetric division as well as to give rise to more mature progenitors of all neural lineages by asymmetric division. A full understanding of the molecular mechanisms regulating their migratory properties and their choice between various differentiation programs is essential if these cells are to be used for therapeutic applications. This review focuses on summarizing the factors and signaling molecules that are involved in migration and differentiation of neural stem cells and also gives an insight into therapeutic potential of these cells with an emphasis on glioma therapy.
High molecular weight aromatic polymers by nickel coupling of aryl polychlorides (1990)

Abstract This paper describes a totally new method for the formation of high molecular weight aromatic polymers. High molecular weight polyarylethersulfones are produced by nickel catalyzed coupling of aryl dichloride monomers. Metallic zinc is used to drive the polymerization reaction which takes place under relatively mild conditions in the presence of triphenylphosphine and a dipolar aprotic solvent. The versatility of the reaction is demonstrated, as well as the ability to provide a variety of high temperature polymers from readily available and inexpensive monomers. It is possible to use an integrated two‐step process to produce aryl dichlorides from inexpensive aryl chlorides, and then to couple these directly to polymer without need for isolation and purification. This process resulted from a fundamental understanding of the chemistry and the use of statistically designed experiments to identify the important reaction parameters and to optimize the degree of polymerization.
ENDOTHELIAL-LEUKOCYTE ADHESION MOLECULES IN HUMAN DISEASE (1994)

An effective host response to infection or tissue damage requires focal accumulation of leukocytes. Leukocyte adhesion to the vessel wall, a key step in this process, depends on the ordered expression of specific endothelial cell surface molecules. The endothelial molecules that support adhesion include selectins that recognize leukocyte cell surface glycoconjugates as well as members of the immunoglobulin superfamily that interact with leukocyte integrins. Although inflammation can occur with minimal damage to the vessel wall and surrounding tissues, control mechanisms sometimes appear to fail, and the inflammatory response itself becomes a significant clinical problem. In this review, we discuss endothelial-leukocyte adhesion molecules with particular emphasis on their expression and function in human disease. Pathophysiological processes presented include atherosclerosis, ischemia-reperfusion injury, acute lung injury, rheumatoid arthritis, and graft rejection. A more detailed description of the discovery and characterization of the key molecules appears in the antecedent article entitled "Endothelial-Leukocyte Adhesion Molecules".
[Specific desensitization with allergen extracts absorbed on calcium phosphate (Pasteur Institute). Clinical and biological study apropos of 107 cases]. (1988)

107 allergic patients (71 children and 36 adults) were desensitized with allergen extracts adsorbed on calcium phosphate. Patients were selected following their symptoms (asthma, rhinitis, juvenile bronchitis, pollinosis), skin tests (ID or Prick) and total or specific IgE levels (PRIST and RAST). A mean of 17 month treatment, usually with house dust and mite extracts, rarely with house dust extract alone and in 6 cases with a mixture of grass and cereal pollens. The major aim of this study was to test the immunotherapy efficiency and to compare the IgE level variations and the clinical results. The treatment was found very good in 62% of the cases, good in 28%, and negative in 10% of the cases. The mean total IgE level has decreased of 58%, and the specific IgE level has decreased in 77% of the patients. The number of patients with a RAST class O to house dust and mites has increased respectively of 23% and 24.4% after the treatment. Besides some very good cases where the IgE levels have dropped there are lew relations between the total or specific IgE antibodies and the clinical results. The tolerance of the hyposensitization treatment was judged excellent. In conclusion, the calcium phosphate absorbed allergen extracts are confirmed as efficient and safe in immunotherapy.
Patterning of the hepato‐pancreatobiliary boundary by BMP reveals heterogeneity within the murine liver bud (2018)

BMP signaling is required to maintain the hepato-pancreatobiliary boundary, at least in part, by indirectly repressing SOX9 in the hepatic endoderm. BMP and FGF signals are each required for the induction of spatially complementary subsets of hepatoblasts. These results underscore the importance of studying early inductive processes in the whole embryo. (Hepatology 2018;68:274-288).
Synthesis and properties of fluorine-containing aromatic polybenzoxazoles from bis(o-aminophenols) and aromatic diacid chlorides by the silylation method (1988)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSynthesis and properties of fluorine-containing aromatic polybenzoxazoles from bis(o-aminophenols) and aromatic diacid chlorides by the silylation methodYutaka Maruyama, Yoshiyuki Oishi, Masaaki Kakimoto, and Yoshio ImaiCite this: Macromolecules 1988, 21, 8, 2305–2309Publication Date (Print):August 1, 1988Publication History Published online1 May 2002Published inissue 1 August 1988https://pubs.acs.org/doi/10.1021/ma00186a001https://doi.org/10.1021/ma00186a001research-articleACS PublicationsRequest reuse permissionsArticle Views699Altmetric-Citations100LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-Alertsclose Get e-Alerts
Very Deep Convolutional Networks for Large-Scale Image Recognition (2014)

In this work we investigate the effect of the convolutional network depth on its accuracy in the large-scale image recognition setting. Our main contribution is a thorough evaluation of networks of increasing depth using an architecture with very small (3x3) convolution filters, which shows that a significant improvement on the prior-art configurations can be achieved by pushing the depth to 16-19 weight layers. These findings were the basis of our ImageNet Challenge 2014 submission, where our team secured the first and the second places in the localisation and classification tracks respectively. We also show that our representations generalise well to other datasets, where they achieve state-of-the-art results. We have made our two best-performing ConvNet models publicly available to facilitate further research on the use of deep visual representations in computer vision.
Ineffective erythropoiesis and thalassemias (2009)

Use of Jak2 inhibitors may limit the overproduction of immature erythroid cells in thalassemia, with the potential of reversing extramedullary hematopoiesis and preventing splenectomy. In addition, preventing iron overload and formation of reactive oxygen species may also be beneficial in limiting tissue damage and ineffective erythropoiesis.
Immunity, ageing and cancer (2008)

Compromised immunity contributes to the decreased ability of the elderly to control infectious disease and to their generally poor response to vaccination. It is controversial as to how far this phenomenon contributes to the well-known age-associated increase in the occurrence of many cancers in the elderly. However, should the immune system be important in controlling cancer, for which there is a great deal of evidence, it is logical to propose that dysfunctional immunity in the elderly would contribute to compromised immunosurveillance and increased cancer occurrence. The chronological age at which immunosenescence becomes clinically important is known to be influenced by many factors, including the pathogen load to which individuals are exposed throughout life. It is proposed here that the cancer antigen load may have a similar effect on "immune exhaustion" and that pathogen load and tumor load may act additively to accelerate immunosenescence. Understanding how and why immune responsiveness changes in humans as they age is essential for developing strategies to prevent or restore dysregulated immunity and assure healthy longevity, clearly possible only if cancer is avoided. Here, we provide an overview of the impact of age on human immune competence, emphasizing T-cell-dependent adaptive immunity, which is the most sensitive to ageing. This knowledge will pave the way for rational interventions to maintain or restore appropriate immune function not only in the elderly but also in the cancer patient.
Spatial conformation of glycans and glycoproteins (1984)

Ten years ago, we anticipated future results by building the Y-shaped molecular model of a biantennary glycan. Progressively, this structure has been refined and modified thanks to experimental data obtained by using physical methods: X-ray diffraction, electron spin resonance (EPR), nuclear magnetic resonance (NMR) including two-dimensional NMR and one-dimensional 1H-nuclear Overhauser effect (NOE) experiments, neutron scattering and hard-sphere exo-anomeric (HSEA) calculations. So, the concept evolved successively from the Y-, to the T-, the bird- and the "broken wing"-conformation, until the demonstration, that these conformers are interconvertible. The bird-conformation as well as the concept of the mobility of antennae are in a good agreement with the reactivity of lectins, including membrane lectins, by rendering accessible any specific sugar structure, and with the activity of glycosyltransferases by making reachable the substitutable hydroxyl groups even in the case of pentaantennary structures. Along this line, we know now that the tetraantennary glycans adopt an "umbrella conformation" in which the four antennae are disposed parallely to the protein surface and act as protective shields. So could be explained the resistance towards proteases and the weak antigenicity of numerous glycoproteins as well as the peculiar behaviour and resistance of metastatic cancerous cells since it has been recently demonstrated that membrane glycoproteins and fibronectin of this kind of cells are significantly enriched in tri- and tetraantennary glycans.
Lack of high affinity fiber receptor activity explains the resistance of ciliated airway epithelia to adenovirus infection. (1997)

Although recombinant adenoviruses are attractive vectors for gene transfer to airway epithelia, they have proven to be relatively inefficient. To investigate the mechanisms of adenovirus-mediated gene transfer to airway epithelia, we examined the role of adenovirus fiber and penton base, the two proteins involved in attachment to and entry of virus into the cell. We used human airway epithelia grown under conditions that allow differentiation and development of a ciliated apical surface that closely resembles the in vivo condition. We found that addition of fiber protein inhibited virus binding and vector-mediated gene transfer to immature airway epithelia, as well as to primary cultures of rat hepatocytes and HeLa cells. However, fiber protein had no effect on vector binding and gene transfer to ciliated airway epithelia. We obtained similar results with addition of penton base protein: the protein inhibited gene transfer to immature epithelia, whereas there was no effect with ciliated epithelia. Moreover, infection was not attenuated with an adenovirus containing a mutation in penton base that prevents the interaction with cell surface integrins. These data suggest that the receptors required for efficient infection by adenovirus are either not present or not available on the apical surface of ciliated human airway epithelia. The results explain the reason for inefficient gene transfer and suggest approaches for improvement.
Asymmetric Functioning of Dimeric Metabotropic Glutamate Receptors Disclosed by Positive Allosteric Modulators (2005)

The recent discovery of positive allosteric modulators (PAMs) for G-protein-coupled receptors open new possibilities to control a number of physiological and pathological processes. Understanding the mechanism of action of such compounds will provide new information on the activation process of these important receptors. Within the last 10 years, a number of studies indicate that G-protein-coupled receptors can form dimers, but the functional significance of this phenomenon remains elusive. Here we used the metabotropic glutamate receptors as a model, because these receptors, for which PAMs have been identified, are constitutive dimers. We used the quality control system of the GABA(B) receptor to generate metabotropic glutamate receptor dimers in which a single subunit binds a PAM. We show that one PAM/dimer is sufficient to enhance receptor activity. Such a potentiation can still be observed if the subunit unable to bind the PAM is also made unable to activate G-proteins. However, the PAM acts as a non-competitive antagonist when it binds in the subunit that cannot activate G-proteins. These data are consistent with a single heptahelical domain reaching the active state per dimer during receptor activation.
Visco-Elastic Properties of Sodium Hyaluronate Solutions (2008)

Views Icon Views Article contents Figures & tables Video Audio Supplementary Data Peer Review Share Icon Share Twitter Facebook Reddit LinkedIn Tools Icon Tools Reprints and Permissions Cite Icon Cite Search Site Citation Werner‐Michael Kulicke, Fabian Meyer, Ali Ö. Bingöl, Derek Lohmann; Visco‐Elastic Properties of Sodium Hyaluronate Solutions. AIP Conf. Proc. 7 July 2008; 1027 (1): 585–587. https://doi.org/10.1063/1.2964773 Download citation file: Ris (Zotero) Reference Manager EasyBib Bookends Mendeley Papers EndNote RefWorks BibTex toolbar search Search Dropdown Menu toolbar search search input Search input auto suggest filter your search All ContentAIP Publishing PortfolioAIP Conference Proceedings Search Advanced Search |Citation Search
Time-action profile of the long-acting insulin analog insulin glargine (HOE901) in comparison with those of NPH insulin and placebo. (2000)

This study shows that the soluble long-acting insulin analog HOE901 induces a smoother metabolic effect than NPH insulin, from which a better substitution of basal insulin requirements may follow.
Apolipoprotein E and mimetic peptide initiate a calcium-dependent signaling response in macrophages (2001)

Apolipoprotein E (ApoE) is a 34-kDa cholesterol transport protein that also possesses immunomodulatory properties. In this study, we demonstrate that ApoE initiates a signaling cascade in murine peritoneal macrophages that leads to increased production of inositol triphosphate with mobilization of intracellular Ca(2+) stores. This cascade is inhibited by pretreatment with receptor-associated protein and Ni(2+), and it is mediated by a pertussis toxin-sensitive G protein. These properties are characteristic of signal transduction induced via ligand binding to the cellular receptor, lipoprotein receptor-related protein. A peptide derived from the receptor-binding region of ApoE also initiates signal transduction in a manner similar to that of the intact protein, suggesting that this isolated region is sufficient for signal transduction. The ApoE-mimetic peptide competed for binding with the intact protein, confirming that they both interact with the same site. ApoE-dependent signal transduction might play a role in mediating the functional properties of this lipoprotein.
Phosphorylation of Glycogen Synthase Kinase-3β During Preconditioning Through a Phosphatidylinositol-3-Kinase–Dependent Pathway Is Cardioprotective (2002)

We previously reported that activation of phosphatidylinositol-3-kinase (PI3-kinase) is involved in ischemic preconditioning (PC). Our goal was to determine downstream targets of PI3-kinase. In perfused rat hearts, PC (4 cycles of 5 minutes of ischemia and 5 minutes of reflow) increased phosphorylation of glycogen synthase kinase-3beta (GSK-3beta), a downstream target of PI3-kinase and protein kinase B (PKB), an effect that was blocked by wortmannin. Because phosphorylation inactivates GSK-3beta, we examined whether PC-induced phosphorylation and inhibition of GSK-3beta is important in PC by using two inhibitors of GSK-3beta, lithium and SB 216763. Pretreatment of perfused rat hearts with lithium or SB 216763, before ischemia, mimicked the protective effects of PC; hearts treated with either lithium or SB 216763 had improved postischemic function and reduced infarct size. These findings indicate that inhibition of GSK-3beta is protective and that this PI3-kinase--dependent signaling pathway may play an important role in ischemic preconditioning.