gebhart/patrepeval huggingface dataset:
Electrical resistivity and7Li Knight shift of liquid Li-Si alloys (1989)

The electrical resistivity rho and the 7Li Knight shift K of liquid Li-Si alloys have been measured for Li concentrations between 0 and 50 at.% Si. From 0 to 20 at.% Si both the electrical conductivity and the Knight shift decrease strongly. Above 20 at.% Si, rho levels off at approximately 650 mu Omega cm and also K remains nearly constant at approximately 25% of the pure-Li Knight shift. When the results are combined with available T1 data, the Korringa enhancement eta is calculated. The approximate relation between rho and eta proposed by Warren (1971) for the diffusive motion regime holds very well. An interpretation on the atomic level is proposed by assuming that in the alloys with more than 20 at.% Si the Si atoms form just the number of covalent bonds necessary to keep EF at a minimum in the density of states
Functional consequences of anti-sense RNA-mediated inhibition of CD8 surface expression in a human T cell clone. (1988)

An experimental approach for defining the function of CD8 has been developed by linking anti-sense RNA mutagenesis and T cell cloning technologies. We have transfected an anti-sense CD8 episomal expression vector into a CD8+ nontransformed human T cell clone that is specific for the human class I alloantigen HLA-B35. Expression of CD8 on this T cell clone, JH.ARL.1, was selectively and efficiently inhibited. Stimulation of this CD8- variant with specific alloantigen resulted in a marked loss of a number of functional responses, including cytotoxicity, proliferation, IL-2 secretion, and IL-2-R expression. However, these same functional responses could be elicited with stimuli that do not require antigen recognition to activate the T cell (anti-CD3 mAbs, PHA). The results of our study support the hypothesis that CD8 is required for recognition of class I MHC alloantigens that results in activation of T cell functional responses.
Exchange of Fluorinated Cyanine Dyes between Different Types of Silver Halide Microcrystals Studied by Imaging Time-of-Flight Secondary Ion Mass Spectrometry (2001)

Time-of-flight secondary ion mass spectrometry (ToF-SIMS) is used to study dye adsorption on silver halide (AgBr or Ag(Br,I)) microcrystals. The dyes are labeled with fluorine to allow their detection at the surface of the microcrystals by means of atomic ions. In this study, particular attention is paid to dye adsorption selectivity as a function of microcrystal morphology and to the possibility of dye exchange between different types of microcrystals. Using a gallium (Ga+) liquid metal ion gun operating at 25 keV as the primary ion source, secondary ion images with a lateral resolution of 65 nm have been collected. This high lateral resolution makes it possible to distinguish between octahedral and cubic AgBr crystals even with an edge length of only 0.4 μm, based on their bromide images. It also enables us to detect and localize the fluorine-labeled dyes at the surface of these microcrystals. When larger cubic crystals with an edge length of 0.8 μm are used, the site selectivity of the fluorine-labeled dye for the edges of these crystals can be studied. Apart from cubic and octahedral crystals, dye adsorption on tabular crystals is also studied.
Nasal administration of opioids for pain management in adults (2002)

Nasal administration of opioids has promising features, but is still in its infancy. Adequately designed clinical studies are needed. Improvements of nasal sprayer devices and opioid formulations may improve clinical outcome.
SPRY2 Is an Inhibitor of the Ras/Extracellular Signal-Regulated Kinase Pathway in Melanocytes and Melanoma Cells with Wild-Type BRAF but Not with the V599E Mutant (2004)

BRAF mutations result in constitutively active BRAF kinase activity and increased extracellular signal-regulated kinase (ERK) signaling and cell proliferation. Initial studies have shown that BRAF mutations occur at a high frequency in melanocytic nevi and metastatic lesions, but recent data have revealed much lower incidence of these mutations in early-stage melanoma, implying that other factors may contribute to melanoma pathogenesis in a wild-type (WT) BRAF context. To identify such contributing factors, we used microarray gene expression profiling to screen for differences in gene expression between a panel of melanocytic and melanoma cell lines with WT BRAF and a group of melanoma cell lines with the V599E BRAF mutation. We found that SPRY2, an inhibitor homologous to SPRY4, which was previously shown to suppress Ras/ERK signaling via direct binding to Raf-1, had reduced expression in WT BRAF cells. Using small interfering RNA-mediated SPRY2 knockdown, we showed that SPRY2 acts as an inhibitor of ERK signaling in melanocytes and WT BRAF melanoma cells, but not in cell lines with the V599E mutation. We also show that SPRY2 and SPRY4 directly bind WT BRAF but not the V599E and other exon 15 BRAF mutants. These data suggest that SPRY2, an inhibitor of ERK signaling, may be bypassed in melanoma cells either by down-regulation of its expression in WT BRAF cells, or by the presence of the BRAF mutation.
O4‐04–04: Tau immunotherapy prevents cognitive decline and clears pathological Tau in a tangle mouse model (2008)

We recently demonstrated that immunotherapy targeting pathological tau protein clears these aggregates in a P301L mouse model with accompanying motor improvements (Asuni A. et al., J. Neurosci., 27, 9115–29, 2007). To determine if this approach would prevent cognitive decline, a novel tangle model (Boutajangout A. et al., ICAD 2008) was immunized with the same phospho-tau derived immunogen. htau mice were cross-bred with mice expressing the M146L PS1 mutation and were maintained on a mouse tau (mtau) knock-out (KO) background. These animals develop early tau pathology based on our preliminary findings and were immunized from 2–3 months of age with our phospho-tau derivative (n=12). Three non-immunized control groups received alum adjuvant alone: 1) Identical mice that were not immunized (n=16); 2) htau/PS1M146L mice that expressed mtau (n=8), as well as; 3) htau littermates on a mtau KO background (n=10). The mice (3–4 months) received the first 3 injections every 2 weeks and then at monthly intervals. At 7–8 months, the mice went through extensive behavioral testing to determine treatment efficacy and were then killed at 8–9 months for analysis. The immunogen elicited an IgM/IgG response and the therapy prevented cognitive decline in three different tests: Radial Arm Maze (p 0.01–0.001); Closed Field Symmetrical Maze (p 0.01–0.001), and; Object Recognition Test (p 0.01). The groups performed equally well in motor tests indicating that motor deficits were not a confounding variable, which further strengthens our results. Tau/tangle aggregates were reduced by 56% in the pyriform cortex (p 0.01) in the immunized mice. Analysis is underway of other brain regions as well as of levels of soluble and insoluble tau protein. Importantly, the cognitive improvements correlated well with reduction of tau aggregates. In the Radial Arm Maze, correlation was observed in days 4–9 as the mice improve at navigating the maze (p 0.05–0.001). Likewise, in the Closed Field Symmetrical Maze, correlation was only observed in the most complex maze (Maze C, p=0.01), and not in the Object Recognition Test, which is a simpler task. Overall, our findings support the feasibility of immunotherapy targeting pathological tau as a potential treatment for Alzheimer's disease. Supported by: AG20197.
Exosomes Released by Melanoma Cells Prepare Sentinel Lymph Nodes for Tumor Metastasis (2011)

Exosomes are naturally occurring biological nanovesicles utilized by tumors to communicate signals to local and remote cells and tissues. Melanoma exosomes can incite a proangiogenic signaling program capable of remodeling tissue matrices. In this study, we show exosome-mediated conditioning of lymph nodes and define microanatomic responses that license metastasis of melanoma cells. Homing of melanoma exosomes to sentinel lymph nodes imposes synchronized molecular signals that effect melanoma cell recruitment, extracellular matrix deposition, and vascular proliferation in the lymph nodes. Our findings highlight the pathophysiologic role and mechanisms of an exosome-mediated process of microanatomic niche preparation that facilitates lymphatic metastasis by cancer cells.
5-Fluorouracil/Leucovorin Combined with Irinotecan and Oxaliplatin (FOLFIRINOX) as Second-Line Chemotherapy in Patients with Advanced Pancreatic Cancer Who Have Progressed on Gemcitabine-Based Therapy (2013)

These results suggest the modest clinical activity regarding efficacy and the acceptable toxicity profile with the FOLFIRINOX regimen as a second-line treatment.
Mechanism by which bile salt disrupts the gastric mucosal barrier in the dog. (1980)

Bile salts disrupt a functional "gastric mucosal barrier" increasing net forward-diffusion (+) of Na+ and back-diffusion (-) of H+. Studying canine Heidenhain pouches, we attempted to distinguish between two possible mechanisms for this effect: (a) mucosal uptake of bile salt with subsequent cellular injury or (b) dissolution of mucosal lipids by intralumenal bile salt. A 10 mM mixture of six conjugated bile salts simulating the proportions found in human bile induced net Na+ flux of 15.5 +/- 3.2 and net H+ flux of -9.9 +/- 3.3 mueq/min. This change was accompanied by an increase in phospholipid efflux out of gastric mucosa from a base-line value of 13.2 +/- 2.7 to 54.8 +/- 2.8 nmol/min (P < 0.001) and an increase in cholesterol efflux from 11.7 +/- 3.8 to 36.3 +/- 3.2 nmol/min (P < 0.001). Saturation with lecithin (25 mM) and cholesterol (50 mM) blocked disruption of the gastric mucosal barrier by bile salt (Na+ flux - 1.2 +/- 0.9, H+ flux 0.6 +/- 1.8 mueq/min). A 10 mM solution of taurodehydrocholate, a bile salt that does not form micelles, induced no net Na+ (-0.3 +/- 0.8) or H+ flux (-0.7 +/- 1.4) and did not increase efflux of phospholipid (11.3 +/- 1.7) or cholesterol (10.4 +/- 2.0) over base line. Bile salt was absorbed from the mixture of six conjugates at 752 +/- 85 nmol/min. Addition of subsaturation amounts of lecithin (4 mM) reduced bile salt absorption three fold to 252 +/- 57 (P < 0.001), but abnormal Na+ flux (14.1 +/- 3.4) and H+ flux (-15.6 +/- 3.5) persisted. Taurodehydrocholate was absorbed to an intermediate extent (467 +/- 116). Dissolution of mucosal lipids is apparently the mechanism by which bile salt disrupts the gastric mucosal barrier, and presumably at least one mechanism by which bile salt can injure the gastric mucosa.
A high-molecular-mass cell-surface protein from Lactobacillus reuteri 1063 adheres to mucus components The GenBank accession number for the sequence reported in this paper is AF120104. (2002)

A gene from Lactobacillus reuteri 1063 encoding a cell-surface protein, designated Mub, that adheres to mucus components in vitro has been cloned and sequenced. The deduced amino acid sequence of Mub (358 kDa) shows the presence of 14 approximately 200 aa repeats and features typical for other cell-surface proteins of Gram-positive bacteria. Fusion proteins consisting of different repeats of Mub and the maltose-binding protein (MBP) were produced. These proteins adhered to pig mucus components, with molecular masses ranging from <0.1 to >2 MDa, to pig gastric mucin and to hen intestinal mucus. The binding of Mub to mucus components occurred in the pH range 3-7.4, with maximum binding at pH 4-5 and could be partly inhibited by the glycoprotein fetuin. Affinity-purified antibodies against recombinant Mub were used in immunofluorescence microscopy to demonstrate the presence of Mub on the cell surface of strain 1063. By using the antibodies in a Western blot analysis, Mub could also be detected in the growth medium. The results implicate Mub as a cell-surface protein that is involved in Lactobacillus interactions with mucin and in colonization of the digestive tract.
Very-high-speed silicon bipolar transistors with in-situ doped polysilicon emitter and rapid vapor-phase doping base (1995)

We present a detailed study of the performance of very-high-speed silicon bipolar transistors with ultra-shallow junctions formed by thermal diffusion. Devices are fabricated with double-polysilicon self-aligned bipolar technology with U-groove isolation on directly bonded SOI wafers to reduce the parasitic capacitances. Very thin and low resistivity bases are obtained by rapid vapor-phase doping (RVD), which is a vapor diffusion technique using a source gas of B/sub 2/H/sub 6/. Very shallow emitters are formed by in-situ phosphorus doped polysilicon (IDP) emitter technology with rapid thermal annealing (RTA). In IDP emitter technology, the emitters are formed by diffusion from the in-situ phosphorus doped amorphous silicon layer. Fabricated transistors are found to have ideal I-V characteristics, large current gain and low emitter resistance for a small emitter. Furthermore, a minimum ECL gate delay time of 15 ps is achieved using these key techniques. Analyses of the high performance using circuit and device simulations indicate that the most effective delay components of an ECL gate are cut-off frequency and base resistance. A high cut-off frequency is achieved by reducing the base width and active collector region. In this study, RVD is used to achieve both high cut-off frequency and low base resistance at the same time.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Ferromagnetic Micropallets for Magnetic Capture of Single Adherent Cells (2010)

We present a magnetic micropallet array and demonstrate its capacity to recover specific, individual adherent cells from large populations and deliver them for downstream single cell analysis. A ferromagnetic photopolymer was formulated, characterized, and used to fabricate magnetic micropallets, which are microscale pedestals that provide demarcated cell growth surfaces with preservation of biophysical properties including photopatternability, biocompatibility, and optical clarity. Each micropallet holds a single adherent cell in culture, and hundreds of thousands of micropallets comprise a single micropallet array. Any micropallet in the array can be recovered on demand, carrying the adhered cell with it. We used this platform to recover selectively single cells, which were subsequently analyzed using single-cell RT-qPCR.
Binary display of hexagonally sampled continuous-tone images (1985)

We consider the binary representation of hexagonally sampled continuous-tone images. The method of error diffusion is extended for the hexagonal lattice. Aliasing artifacts as well as the spatial patterns generated with this method are compared with those obtained in the binarization of rectangularly sampled images. The nonideal printing process is analyzed for this lattice structure, and the binarization process is modified so as to suppress dot overlap and minimize tone degradations. On a nonideal printer it is shown that binarization in a hexagonal lattice is more robust than in a rectangular one in tone preservation.
Phosphorylation of SMC1 is a critical downstream event in the ATM–NBS1–BRCA1 pathway (2004)

The ATM protein kinase is activated by intermolecular autophosphorylation in response to DNA damage and initiates cellular signaling pathways that facilitate cell survival and reduce chromosomal breakage. Here, we show that NBS1 and BRCA1 are required for the recruitment of previously activated ATM to the sites of DNA breaks after ionizing irradiation, and that this recruitment is required for the phosphorylation of SMC1 by ATM. To explore the functional importance of SMC1 phosphorylation, murine cells were generated, in which the two damage-induced phosphorylation sites in SMC1 are mutated. Although these cells demonstrate normal phosphorylation and focus formation of ATM, NBS1, and BRCA1 proteins after IR, they exhibit a defective S-phase checkpoint, decreased survival, and increased chromosomal aberrations after DNA damage. These observations suggest that many of the abnormal stress responses seen in cells lacking ATM, NBS1, or BRCA1 result from a failure of ATM migration to sites of DNA breaks and a resultant lack of SMC1 phosphorylation.
Zymogen activation: a new system for homogeneous ligand-binding assay. (1984)

In this ligand-binding assay procedure, sensitivity is enhanced by successive generation of enzyme active sites via two zymogens from the blood-coagulation cascade: Factor X and prothrombin. A protease fraction from Russell's viper venom (RVV) acts upon Factor X, initiating a two-step cascade that culminates in generation of thrombin, the activity of which is monitored with a chromogenic substrate. In the model presented here, the analyte of interest, biotin, is covalently coupled to Factor X. In the presence of avidin, a biotin-binding protein, RVV cannot initiate cascade activity; however, the inhibition can be competitively overcome by addition of free biotin to the reaction mixture. In a complete system, the dose-response curve is linear from 20 to 100 nmol of biotin per liter. Such an assay offers improved sensitivity over many radioisotope-independent immunoassay methods, and may be applicable to a wide variety of analytes.
Vagal modulation of heart rate variability during atrial fibrillation in pigs (2010)

Atrial fibrillation (AF) is the most common sustained cardiac dysrhythmia and is associated with an increased risk for sudden cardiac death. The ventricular rhythm is irregular and displays both non-linear and linear patterns; however, it has not been determined whether vagally derived patterns are manifest within the irregular rhythm. Moreover, indices of increased vagal control are associated with reduced risk of sudden cardiac death. In this study, we sought to determine whether the ventricular rhythm pattern during AF is, in part, modulated by vagal activity. Vagal oscillations were forced at 0.15 Hz by neck suction in 12 pigs with sustained AF with and without glycopyrrolate (0.15 microg/kg, intravenously) vagal blockade. Vagal activity was evaluated using time- and frequency-domain heart rate variability measures. The standard deviation of RR intervals (SDRRI) was significantly increased during vagal activation compared with baseline (P = 0.006). Moreover, SDRRI correlated significantly with spectral power at 0.15 Hz during baseline (r = 0.90, P < .001) and vagal activation (r = 0.86, P < 0.05). Glycopyrrolate blocked the increase in SDRRI (P < 0.001) and blunted spectral power at 0.15 Hz (P < 0.05). These results indicate that: (1) power spectral analysis may be used to assess parasympathetic regulation during AF, and (2) vagal oscillations produce an entrainment of the ventricular rhythm during AF in pigs.
Fundamental Studies of Tungsten Alkylidene Imido Monoalkoxidepyrrolide Complexes (2009)

Two diastereomers of the monoalkoxidepyrrolide (MAP) species, W(NAr)(CH(2))(Me(2)Pyr)(OR*) (1; Ar = 2,6-diisopropylphenyl, Me(2)Pyr = 2,5-dimethylpyrrolide, OR* = (R)-3,3'-dibromo-2'-(tert-butyldimethylsilyloxy)-5,5',6,6',7,7',8,8'-octahydro-1,1'-binaphthyl-2-olate), were generated through addition of R*OH to W(NAr)(CH(2))(Me(2)Pyr)(2). The unsubstituted tungstacyclobutane species, W(NAr)(C(3)H(6))(Me(2)Pyr)(OR*) (2), was isolated by treating the mixture of diastereomers of 1 with ethylene. An X-ray study revealed 2 to have a trigonal bipyramidal structure in which the imido and phenoxide ligands are in axial positions. A variety of NMR experiments were carried out on 1 and 2. The major findings are the following: (i) the methylidene ligands in the two diastereomers of 1 rotate readily about the W horizontal lineC bond (k = 2-7 s(-1) at 22 degrees C); (ii) NMR studies are consistent with 2 breaking up to give an intermediate alkylidene/ethylene complex, (R)- and (S)-W(CH(2))(C(2)H(4)); and (iii) the ethylene in the (R)-W(CH(2))(C(2)H(4)) intermediate can rotate about the W-ethylene bond axis at approximately the same rate as 2 re-forms or ethylene is lost to give 1. Compound 1 reacts with trimethylphosphine to yield (R)-1(PMe(3)). Two intermediate PMe(3) adducts were observed and found to convert to (R)-1(PMe(3)) in an intramolecular fashion with an average rate constant at 5 degrees C of approximately 1.4 x 10(-4) s(-1). Both neophylidene (4) and methylidene (5) MAP species containing 2,3,5,6-tetraphenylphenoxide ligand also were prepared. Compound 5 can be heated to 80 degrees C, where methylidene rotation about the W=C bond is facile and observable in a variable-temperature (1)H NMR spectrum. A (1)H-(1)H EXSY spectrum of 5 in benzene-d(6) at 20 degrees C showed that the methylidene protons are exchanging with k = 90 s(-1). A structure of 5(THF) showed it to be a square pyramid with the methylidene ligand in the apical position and THF coordinated trans to the imido ligand. Exposure of 5 to ethylene generated the tungstacyclobutane complex, W(NAr)(C(3)H(6))(Me(2)Pyr)(OR) (6), whose structure is analogous to that of 2. Treatment of 5 with PMe(3) yielded yellow 5(PMe(3)), an X-ray study of which revealed it to be a square pyramid with the methylidene ligand in the apical position and the phosphine trans to the pyrrolide. These studies suggest that metallacyclobutane intermediates in metathesis reactions with MAP species are likely to contain axial imido and phenoxide ligands, that metallacycles are formed when an olefin approaches the metal in a MAP species trans to the pyrrolide, and that the configuration at the metal inverts as a consequence of each forward metathesis step.
A unique vascular graft concept for coronary and peripheral applications. (1989)

Synthetic vascular grafts for coronary bypass (3-4 mm inner diameter [ID], 40-100 ml/min) continue to fail despite success in high flow peripheral applications. A unique method is presented that uses a fluid dynamic approach to improve patency. A large diameter graft (5-6 mm ID) is used with an arteriovenous (AV) shunt to create a high flow rate (350-650 ml/min); a Venturi flow resistance controls the AV shunt and provides high pressure to the coronary arteries. The resulting graft can supply as many coronary arteries as required by means of side to side anastomoses upstream from the Venturi resistance. The concept was studied in a mock circulation system to analyze fluid dynamics under pulsatile flow. Mathematical models were used to study laminar and turbulent shear stresses and flow distributions over the physiologic range of Reynolds numbers. In vitro testing demonstrated little bovine red blood cell (RBC) hemolysis (0.249 mg Hb/min) compared with other devices. In vivo testing in sheep showed no significant acute changes in pulse rate or blood pressure in response to the shunt. The fluid and mathematical modeling of this concept has additional application in the study of flow past stenoses.