gebhart/patrepeval huggingface dataset:
Targeted alterations in iron homeostasis underlie plant defense responses (2007)

Iron (Fe) is a ubiquitous redox-active element essential for most life. The formation of localized cell wall appositions, the oxidative burst and the production of pathogenesis-related proteins are hallmarks of plant defense responses. Here, we report that iron is a central mediator linking these three phenomena. We show that in response to pathogen attack, reactive Fe3+, but not Fe2+, is deposited at cell wall appositions where it accumulates and mediates the oxidative burst. We provide evidence that the bulk secretion of Fe3+ provoked by pathogen attack leads to intracellular iron depletion, and that H2O2 itself induces ATP-dependent intracellular iron efflux. Finally, we demonstrate that this intracellular iron depletion promotes the transcription of pathogenesis-related genes in concert with H2O2. This work identifies iron as an underlying factor associated with the oxidative burst and regulating cereal defenses, and establishes links between disease-related iron homeostasis in plants and animals.
Developmental disorder associated with increased cellular nucleotidase activity (1997)

Four unrelated patients are described with a syndrome that included developmental delay, seizures, ataxia, recurrent infections, severe language deficit, and an unusual behavioral phenotype characterized by hyperactivity, short attention span, and poor social interaction. These manifestations appeared within the first few years of life. Each patient displayed abnormalities on EEG. No unusual metabolites were found in plasma or urine, and metabolic testing was normal except for persistent hypouricosuria. Investigation of purine and pyrimidine metabolism in cultured fibroblasts derived from these patients showed normal incorporation of purine bases into nucleotides but decreased incorporation of uridine. De novo synthesis of purines and cellular phosphoribosyl pyrophosphate content also were moderately decreased. The distribution of incorporated purines and pyrimidines did not reveal a pattern suggestive of a deficient enzyme activity. Assay of individual enzymes in fibroblast lysates showed no deficiencies. However, the activity of cytosolic 5'-nucleotidase was elevated 6- to 10-fold. Based on the possibility that the observed increased catabolic activity and decreased pyrimidine salvage might be causing a deficiency of pyrimidine nucleotides, the patients were treated with oral pyrimidine nucleoside or nucleotide compounds. All patients showed remarkable improvement in speech and behavior as well as decreased seizure activity and frequency of infections. A double-blind placebo trial was undertaken to ascertain the efficacy of this supplementation regimen. Upon replacement of the supplements with placebo, all patients showed rapid regression to their pretreatment states. These observations suggest that increased nucleotide catabolism is related to the symptoms of these patients, and that the effects of this increased catabolism are reversed by administration of uridine.
Tracking a 3D maneuvering target with passive sensors (1991)

A novel application of the interacting multiple models (IMM) algorithm in which passive infrared sensors are fused for tracking a target maneuvering in three dimensions is discussed. More accurate models of target motion are proposed to improve performance. When the general models are used to describe the maneuvering periods, it is shown that the IMM behaviour is not satisfactory, in that the innovations associated with the different models do not discriminate between the corresponding target maneuvering regimes. The turning of the Markov chain transition matrix, i.e., a priori information, is then crucial to obtaining the correct ordering of the a posteriori regime probabilities. On the contrary, a more satisfactory behavior of the IMM algorithm is obtained by carefully selecting the target motion models in the different regimes.< <ETX xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">&gt;</ETX>
Increased Carbon Monoxide in Exhaled Air of Subjects with Upper Respiratory Tract Infections (1998)

Viral infection may induce the expression of heme oxygenase, resulting in increased carbon monoxide (CO) formation. CO may be produced by various cells of the upper and lower respiratory tract and may be detected in the exhaled air. Therefore, exhaled CO concentrations were measured on a CO monitor by vital capacity maneuver in subjects with upper respiratory tract infections (URTIs) and in nonsmoking and smoking healthy control subjects. At the time of symptoms of URTI, exhaled CO concentrations were 5.6 +/- 0.4 ppm and decreased to 1.0 +/- 0.1 ppm during recovery. Recovery values of exhaled CO were similar to those in age-matched nonsmoking healthy control subjects (1.2 +/- 0.3 ppm). Smoking healthy control subjects had the highest levels of exhaled CO concentration among the groups (18.5 +/- 2.5 ppm). These findings suggest that symptomatic URTIs increase the concentration of CO in exhaled air. This may reflect the induction of heme oxygenase that has an antiviral effect in the airways.
Functional anergy in a subpopulation of naive B cells from healthy humans that express autoreactive immunoglobulin receptors (2008)

Self-reactive B cells not controlled by receptor editing or clonal deletion may become anergic. We report that fully mature human B cells negative for surface IgM and retaining only IgD are autoreactive and functionally attenuated (referred to as naive IgD(+)IgM(-) B cells [B(ND)]). These B(ND) cells typically make up 2.5% of B cells in the peripheral blood, have antibody variable region genes in germline (unmutated) configuration, and, by all current measures, are fully mature. Analysis of 95 recombinant antibodies expressed from the variable genes of single B(ND) cells demonstrated that they are predominantly autoreactive, binding to HEp-2 cell antigens and DNA. Upon B cell receptor cross-linkage, B(ND) cells have a reduced capacity to mobilize intracellular calcium or phosphorylate tyrosines, demonstrating that they are anergic. However, intense stimulation causes B(ND) cells to fully respond, suggesting that these cells could be the precursors of autoantibody secreting plasma cells in autoimmune diseases such as systemic lupus erythematosus or rheumatoid arthritis. This is the first identification of a distinct mature human B cell subset that is naturally autoreactive and controlled by the tolerizing mechanism of functional anergy.
Prophylaxis of <i>Plasmodium falciparum</i> Infection in a Human Challenge Model with WR 238605, a New 8-Aminoquinoline Antimalarial (1998)

The prophylactic efficacy of WR 238605, a primaquine analog, was studied with a human Plasmodium falciparum challenge model. A single oral dose of 600 mg, administered 1 day prior to challenge, successfully protected three of four subjects. The fourth subject developed mild, oligosymptomatic malaria on day 31, with drug concentrations one-half of those in the protected individuals. WR 238605 appears to be a promising prophylactic drug for P. falciparum malaria.
The Structure and Functions of Xyloglucan (1989)

Journal Article The Structure and Functions of Xyloglucan Get access STEPHEN C. FRY STEPHEN C. FRY Department of Botany, University of EdinburghThe King's Buildings, Mayfield Road, Edinburgh EH9 3JH, UK Search for other works by this author on: Oxford Academic PubMed Google Scholar Journal of Experimental Botany, Volume 40, Issue 1, January 1989, Pages 1–11, https://doi.org/10.1093/jxb/40.1.1 Published: 01 January 1989 Article history Received: 26 April 1988 Published: 01 January 1989
Virtual bronchoscopy of peripheral nodules using arteries as surrogate pathways (2005)

The recent introduction of ultrathin bronchoscopy offers considerable promise for diagnosing even small peripheral lung nodules previously considered inaccessible for routine flexible bronchoscopy. However this requires obtaining an accurate roadmap prior to endoscopy. Although virtual bronchoscopy (VB) has proved to be a useful tool for planning transbronchial interventions involving the central airways, to date, VB has received little attention for providing roadmaps to peripheral lesions. This may be especially problematic, as ultrathin bronchoscopes can now access airways not visualized on routine high-resolution CT scanners. We propose to extend the reach of virtual bronchoscopy by using peripheral arteries as surrogates for peripheral bronchi that cannot be identified even with high-resolution CT technique. Since every bronchus is accompanied by an artery, it should hypothetically be possible to substitute one for another and derive useful navigational roadmaps. This paper presents a preliminary investigation of this concept, using a combination of virtual endoscopic techniques. Virtual angioscopic and bronchoscopic flythroughs are created and transition points are selected at points that can be easily identified on CT images as corresponding structures. The proximal bronchial path and the distal arterial path are then combined and presented as a single continuous flythrough. Our preliminary investigations show that as expected, the local geometry of the airway and corresponding artery are similar. In addition to visual inspection, we use the segmentation of the arterial and bronchial trees and their tree models. Selected paths from each tree model are compared by various similarity measures in order to demonstrate their correspondence. We anticipate that this technique for bronchoscopy planning will enable bronchoscopic evaluation of previously unreachable peripheral lung nodules.
Physiologic and Proteomic Evidence for a Role of Nitric Oxide in Biofilm Formation by <i>Nitrosomonas europaea</i> and Other Ammonia Oxidizers (2004)

NO, a free radical gas, is the signal for Nitrosomonas europaea cells to switch between different growth modes. At an NO concentration of more than 30 ppm, biofilm formation by N. europaea was induced. NO concentrations below 5 ppm led to a reversal of the biofilm formation, and the numbers of motile and planktonic (motile-planktonic) cells increased. In a proteomics approach, the proteins expressed by N. europaea were identified. Comparison studies of the protein patterns of motile-planktonic and attached (biofilm) cells revealed several clear differences. Eleven proteins were found to be up or down regulated. Concentrations of other compounds such as ammonium, nitrite, and oxygen as well as different temperatures and pH values had no significant effect on the growth mode of and the proteins expressed by N. europaea.
Involvement of TAAAG elements suggests a role for Dof transcription factors in guard cell‐specific gene expression (2001)

Due to their unique structure and function, guard cells have attracted much attention at the physiological level. Very little, however, is known about the molecular events involved in the determination and maintenance of guard cell specificity. The KST1 gene encodes a K+ influx channel of guard cells in potato, and was therefore chosen as a model to study regulation of guard cell-specific gene expression. Transgenic potato plants carrying a fusion between the KST1 promoter and the E. coli uidA (beta-glucuronidase) reporter gene revealed promoter activity in guard cells and in flowers. A detailed dissection of the KST1 promoter led to the discovery of two independent small TATA box-proximal regulatory units, each of which was sufficient to direct guard cell-specific gene transcription. Both fragments contain the sequence motif, 5'-TAAAG-3', which is related to known target sites for a novel class of zinc finger transcription factors, called Dof proteins. Block mutagenesis of these Dof target sites in the context of different promoter constructs dramatically reduced guard cell promoter activity. A Dof gene, StDof1, was cloned and shown to be expressed in epidermal fragments highly enriched for guard cells. In gel retardation experiments, the StDof1 protein interacted in a sequence-specific manner with a KST1 promoter fragment containing the TAAAG motif. These results provide evidence that TAAAG elements are target sites for trans-acting Dof proteins controlling guard cell-specific gene expression. Our data will add to the design of tailor-made guard cell promoters as a further tool in molecular engineering of guard cell function and, hence, control of stomatal carbon dioxide (CO2) uptake and water loss in crop plants.
Dynamic Resource Allocation Scheme in Cloud Computing (2015)

Cloud Computing environment provisions the supply of computing resources on the basis of demand, as and when needed. It builds upon advances of virtualisation and distributed computing to support cost efficient usage of computing resources, emphasizing on resource scalability and on-demand services. It allows business outcomes to scale up and down their resources based on needs. Managing the customer demand creates the challenges of on-demand resource allocation. Virtual Machine (VM) technology has been employed for resource provisioning. It is expected that using virtualized environment will reduce the average job response time as well as executes the task according to the availability of resources. Hence VMs are allocated to the user based on characteristics of the job. Effective and dynamic utilization of the resources in cloud can help to balance the load and avoid situations like slow run of systems. This paper mainly focuses on allocation of VM to the user, based on analyzing the characteristics of the job. Main principle of this work is that low priority jobs (deadline of the job is high) should not delay the execution of high priority jobs (deadline of the job is low) and to dynamically allocate VM resources for a user job within deadline
Effect of several d-morphinans on ascites tumors in mice. (1987)

Dextromethorphan and its analogues (DM 16, DM 34, DM 72, DM 75 and DM 96) were examined for their effect on Ehrlich ascites carcinoma or ascites sarcoma-180 in female mice of the ddY strain. The suspension of Ehrlich carcinoma cells or sarcoma-180 cells was prepared from mice at 10 days after i.p. inoculation of the cells, using Hanks' balanced salt solution, and the cell suspension was inoculated i.p. into mice (2 X 10(6) viable cells/mouse). The chemicals dissolved in physiological saline containing 5% HCO-60 were then injected i.p. into the mice once daily for 5 successive days (5-40 mg/kg/day). In addition, mice given the tumor cells were treated with the saline containing 5% HCO-60 alone for 5 days (untreated mice). In groups of mice bearing Ehrlich ascites carcinoma or ascites sarcoma-180, the mean survival time of mice treated with 20-40 mg/kg/day of DM 96 was more than twice that of the corresponding untreated mice. The mean survival time of mice treated with 20 mg/kg/day of DM 96 was also longer than that of mice treated with 40 mg/kg/day of the other chemicals, irrespective of the ascites tumors. Concerning these survival times, the LD50 (i.p.) of DM 96 in mice differed slightly from that of other chemicals (88 mg/kg and 77-106 mg/kg). These results indicate that DM 96 is more active than the other chemicals against the ascites tumors in mice.
Interactive video cutout (2005)

We present an interactive system for efficiently extracting foreground objects from a video. We extend previous min-cut based image segmentation techniques to the domain of video with four new contributions. We provide a novel painting-based user interface that allows users to easily indicate the foreground object across space and time. We introduce a hierarchical mean-shift preprocess in order to minimize the number of nodes that min-cut must operate on. Within the min-cut we also define new local cost functions to augment the global costs defined in earlier work. Finally, we extend 2D alpha matting methods designed for images to work with 3D video volumes. We demonstrate that our matting approach preserves smoothness across both space and time. Our interactive video cutout system allows users to quickly extract foreground objects from video sequences for use in a variety of applications including compositing onto new backgrounds and NPR cartoon style rendering.
Bismuth-zinc-niobate embedded capacitors grown at room temperature for printed circuit board applications (2006)

We fabricated metal-insulator-metal (MIM) thin film capacitors with Bi1.5Zn1.0Nb1.5O7 (BZN) dielectric films. The BZN films were deposited at room temperatures by pulsed laser deposition and annealed below 200°C which is compatible with the used polymer-based substrates. The dielectric constant of BZN films increases from 2 to 70, when they are annealed at 150°C, but still in amorphous phase. We found that a considerable portion of Bi metallic phase still remains in the as-deposited film. They turn into oxides upon annealing at &amp;gt;120°C, causing the dramatic change of the dielectric properties. Amorphous BZN thin films exhibit superior dielectric characteristics, capacitance density of 150nF∕cm2, and leakage current less than 1μA∕cm2 at 5V. The MIM capacitors using amorphous BZN thin films will be a promising candidate for the PCB-embedded capacitors.
Recent Trends in U.S. Breast Cancer Incidence, Survival, and Mortality Rates (1996)

The decrease in the diagnosis of regional disease in the late 1980s in women over the age of 40 years likely reflects the increased use of mammography earlier in the 1980s. The increase in survival rates, particularly for regional disease, likely reflects improvements in systemic adjuvant therapy. Statistical modeling indicates that the recent drop in breast cancer mortality is too rapid to be explained only by the increased use of mammography; likewise, there has been no equivalent dramatic increase in survival rates that would implicate therapy alone. Thus, indications are that both are involved in the recent rapid decline in breast cancer mortality rates in the United States.
Operating and beam characteristics, including spectral narrowing, of a TEA rare-gas halide excimer laser (1979)

A simple TEA excimer laser has been developed having a fast discharge with distributed preionization. The output pulses are short (∼7 ns), of high peak power (5-15 MW), and good reproducibility. Narrow linewidth (<1 cm <sup xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink">-1</sup> ), and tunability (∼0.8 nm) have been obtained with KrF using a grating at grazing incidence.
Biochemical and pharmacological activities of SSR 146977, a new potent nonpeptide tachykinin NK<sub>3</sub> receptor antagonist (2002)

SSR 146977 is a potent and selective antagonist of the tachykinin NK3 receptor. In Chinese hamster ovary cells expressing the human tachykinin NK3 receptor, SSR 146977 inhibited the binding of radioactive neurokinin B to NK3 receptors (Ki = 0.26 nM), senktide (10 nM) induced inositol monophosphate formation (IC50 = 7.8-13 nM), and intracellular calcium mobilization (IC50 = 10 nM). It antagonized [MePhe7]neurokinin B induced contractions of guinea pig ileum (pA2 = 9.07). Senktide (30 nM) induced firing rate increase of noradrenergic neurons in the guinea pig locus coeruleus and dopaminergic neurons in the guinea pig substantia nigra was also blocked by SSR 146977 (50 and 100 nM, respectively). In vivo, in the respiratory system, SSR 146977 inhibited bronchial hyperresponsiveness to acetylcholine, bronchial microvascular permeability hypersensitivity to histamine (doses of 0.1-1 mg/kg i.p.), and cough (doses of 0.03-1 mg/kg i.p.) provoked by citric acid in guinea pigs. In the central nervous system, SSR 146977 inhibited turning behaviour (ID50 = 0.2 mg/kg i.p. and 0.4 mg/kg p.o.) and prevented the decrease of locomotor activity (10 and 30 mg/kg i.p) mediated by the stimulation of NK3 receptors in gerbils. In guinea pigs, SSR 146977 antagonized senktide-induced acetylcholine release in the hippocampus (0.3 and 1 mg/kg i.p) and norepinephrine release in the prefrontal cortex (0.3 mg/kg i.p.). It also prevented haloperidol-induced increase of the number of spontaneously active dopamine A10 neurons (1 and 3 mg/kg i.p.).
Structure-Activity Relationship Studies on the Novel Neuropeptide Orphanin FQ (1996)

The heptadecapeptide orphanin FQ (OFQ) is an endogenous ligand to an opioid-like G protein-coupled receptor. Although the primary structure of OFQ exhibits some similarity to the opioid peptides, OFQ is not recognized by opioid receptors nor does the OFQ receptor bind opioid ligands. In order to investigate the structural determinants of this ligand/receptor selectivity, we conducted a systematic structure-activity study on OFQ to characterize which sites of the molecule are important for receptor activation. Alanine- and D-amino acid-scanning mutagenesis revealed several residues in the amino-terminal half of OFQ which participate in both receptor binding and activation. Most strikingly, the Phe1 position could be changed to a tyrosine without loss of biological activity. In addition, the OFQ receptor seemed to require recognition of the complete peptide molecule for activation. These results indicate that the mode of interaction of OFQ with its receptor may be different from that of the opioid peptides with their respective receptors and might therefore account for the observed selectivity.
Juicio de faltas (2002)

Enunciado: 
El letrado de la parte denunciante en un juicio de faltas, y en el tramite de conclusiones solicita la condena de Francisco y de Ignacio como autores de una falta de danos. Ignacio habia sido citado al acto de juicio en calidad de testigo; al dictarse por el juzgador sentencia condenatoria contra Francisco, que era el denunciado, no se hace pronunciamiento sobre la condena de Ignacio. Se interpone por el mencionado letrado incidente de nulidad de actuaciones por no haberse resuelto sobre la solicitud de condena de Ignacio. 
• Cuestiones planteadas: 
- ?Es correcta la solicitud efectuada por el letrado denunciante? 
- ?Es correcto el incidente de nulidad planteado? 
- Plazos para interponer el recurso contra la sentencia.
Spatio-temporal Dynamics of Protein Kinase B/Akt Signaling Revealed by a Genetically Encoded Fluorescent Reporter (2004)

The serine/threonine kinase protein kinase B (PKB)/Akt is a critical regulator of insulin signaling, cell survival, and oncogenesis. The activation mechanisms of this key kinase are well characterized. In contrast, inactivation of PKB signaling by phosphatases is less well understood. To study the dynamics of PKB signaling in live cells, we generated a genetically encoded fluorescent reporter for PKB activity that reversibly responds to stimuli activating phosphatidylinositol 3-kinase. Specifically, phosphorylation of the reporter expressed in mammalian cells causes changes in fluorescence resonance energy transfer, allowing real-time imaging of phosphorylation catalyzed by PKB. Because of its reversibility, the reporter also allows termination of PKB signaling by phosphatases to be monitored. We found that PKB signaling in the cytosol was more rapid and more transient compared with that in the nucleus, suggesting the presence of differentially regulated phosphatase activity in these two compartments. Furthermore, targeting of the reporter to the plasma membrane, where PKB is activated, resulted in accelerated and prolonged response compared with the response in the cytosol, suggesting that release of PKB or its substrates from the membrane is required for desensitization of PKB signaling. These data reveal spatio-temporal gradients of both signal propagation and signal termination in PKB signaling.