gebhart/patrepeval huggingface dataset:
Understanding the Biological Rationale for the Diversity of Cellulose-directed Carbohydrate-binding Modules in Prokaryotic Enzymes (2006)

Plant cell walls are degraded by glycoside hydrolases that often contain noncatalytic carbohydrate-binding modules (CBMs), which potentiate degradation. There are currently 11 sequence-based cellulose-directed CBM families; however, the biological significance of the structural diversity displayed by these protein modules is uncertain. Here we interrogate the capacity of eight cellulose-binding CBMs to bind to cell walls. These modules target crystalline cellulose (type A) and are located in families 1, 2a, 3a, and 10 (CBM1, CBM2a, CBM3a, and CBM10, respectively); internal regions of amorphous cellulose (type B; CBM4-1, CBM17, CBM28); and the ends of cellulose chains (type C; CBM9-2). Type A CBMs bound particularly effectively to secondary cell walls, although they also recognized primary cell walls. Type A CBM2a and CBM10, derived from the same enzyme, displayed differential binding to cell walls depending upon cell type, tissue, and taxon of origin. Type B CBMs and the type C CBM displayed much weaker binding to cell walls than type A CBMs. CBM17 bound more extensively to cell walls than CBM4-1, even though these type B modules display similar binding to amorphous cellulose in vitro. The thickened primary cell walls of celery collenchyma showed significant binding by some type B modules, indicating that in these walls the cellulose chains do not form highly ordered crystalline structures. Pectate lyase treatment of sections resulted in an increased binding of cellulose-directed CBMs, demonstrating that decloaking cellulose microfibrils of pectic polymers can increase CBM access. The differential recognition of cell walls of diverse origin provides a biological rationale for the diversity of cellulose-directed CBMs that occur in cell wall hydrolases and conversely reveals the variety of cellulose microstructures in primary and secondary cell walls.
Effect of Laparoscopic Roux-En Y Gastric Bypass on Type 2 Diabetes Mellitus (2003)

LRYGBP resulted in significant weight loss (60% percent of excess body weight loss) and resolution (83%) of T2DM. Patients with the shortest duration and mildest form of T2DM had a higher rate of T2DM resolution after surgery, suggesting that early surgical intervention is warranted to increase the likelihood of rendering patients euglycemic.
Generation of high-frequency coherent acoustic phonons in a weakly coupled superlattice (1999)

In this work we analyze conditions of generation of high frequency coherent acoustic phonons in a biased semiconductor superlattice. We show that the electron perpendicular transport provides the electron population inversion for interwell phonon-assisted transitions and generation of phonons propagating along the superlattice axis. The generation rate is large and exceeds the phonon losses in perfect superlattices. Under such conditions, the phonon subsystem is unstable with respect to generation of the coherent phonon modes. Influence of the phonon spectra modification in the superlattice on the generation rate is examined. Effects restricting the intensity of the phonon generation are also pointed out.
Reaction of 4-aroyl-2(3H)-dihydrofuranones with hydroxylamine hydrochloride. Synthesis and pharmacological study of a series of 3-aryl-4,5-dihydro-4-isoxazoleacetic acids (1991)

We have synthesized and tested for their antiinflammatory activity a new series of 3-aryl-4,5-dihydro-4-isoxazoleacetic acids ( IVa-IVg ). Preliminary pharmacological results seem to indicate the 3-phenyl derivative IVa as the most interesting compound. In fact, when tested against carrageenin edema in Wistar rats, it shows antiinflammatory activity comparable to that of naproxene, taken as reference drug, though of shorter duration. All the substituted phenyl derivatives were less active ( IVd-IVf ) or inactive ( IVb, IVc, IVg ).
Bovine endothelial cells transformed in vitro by benzo(<i>a</i>)pyrene (1983)

A cloned strain of bovine vascular endothelial cells with a finite in vitro lifespan was treated with benzo(a)pyrene (BP) after approximately 75% of its lifespan was completed. Untreated cultures of this strain senesced upon serial subcultivation and contained large, nondividing cells. In three out of seven trials, BP treatment produced transformed lines with altered phenotypic characteristics. The transformed cells appeared in the cultures concomitant with the senescence of the parent cells. All transformed cell lines examined exhibited indefinite lifespans and altered karyotypes. Two of the lines retained most of the characteristics of normal endothelial cells, except that one became aneuploid and the other polyploid. Neither of these lines formed tumors when inoculated into nude mice. The remaining two lines retained mostly diploid karyotypes, but a high percentage of cells contained Robertsonian translocations. In one line cell volume was markedly reduced. In addition, these lines grew in multilayers, were anchorage independent, and proliferated in medium containing 0.5% serum. When 10(7) cells of these lines were injected into nude mice, tumors appeared within 1 week and were identified as malignant hemangioendotheliomas of bovine origin.
Prednisone and Cyclosporine in the Treatment of Severe Graves' Ophthalmopathy (1989)

It is uncertain what is the most appropriate medical therapy for patients with severe Graves' ophthalmopathy. Therefore, we carried out a single-blind, randomized clinical trial to compare the efficacy of prednisone with that of cyclosporine in 36 patients who had been euthyroid for at least two months. The two groups, each consisting of 18 patients, were similar in age, sex, and the duration and severity of ophthalmopathy. The initial dose of cyclosporine was 7.5 mg per kilogram of body weight per day, and that of prednisone was 60 mg per day, which was subsequently tapered to 20 mg per day. During the 12-week treatment period, 11 prednisone-treated and 4 cyclosporine-treated patients responded to therapy (61 percent vs. 22 percent; P = 0.018); response was manifested by decreases in eye-muscle enlargement and proptosis and improved visual acuity and total and subjective eye scores. There were no differences at base line between the patients who later responded and those who did not. Prednisone was tolerated less well than cyclosporine. After 12 weeks, patients who did not respond were treated for another 12 weeks with a combination of cyclosporine and a low dose of prednisone. Among the 9 patients who initially received prednisone, the addition of cyclosporine resulted in improvement in 5 (56 percent); among the 13 patients who received cyclosporine initially, 8 (62 percent) improved after the addition of prednisone. Combination therapy was better tolerated than prednisone treatment alone. We conclude that single-drug therapy with prednisone is more effective than cyclosporine in patients with severe Graves' ophthalmopathy. The combination can be effective in patients who do not respond to either drug alone.
Wormlike Micelles of Polyoxyethylene Alkyl Ether Mixtures C<sub>10</sub>E<sub>5</sub> + C<sub>14</sub>E<sub>5</sub> and C<sub>14</sub>E<sub>5</sub> + C<sub>14</sub>E<sub>7</sub>:  Hydrophobic and Hydrophilic Chain Length Dependence of the Micellar Characteristics (2006)

The wormlike micelles formed with the binary mixtures of surfactant polyoxyethylene alkyl ethers (CiEj), C10E5 + C14E5 (Mix1) and C14E5 + C14E7 (Mix2), were characterized by static (SLS) and dynamic light scattering (DLS) experiments. The SLS results have been analyzed with the aid of the light scattering theory for micelle solutions, thereby yielding the molar mass Mw(c) as a function of c along with the cross-sectional diameter d of the micelle. The observed Kc/DeltaR0 as a function of c, the mean-square radius of gyration (S2) and the hydrodynamic radius RH as functions of Mw have been well described by the theories for the wormlike spherocylinder model. It has been found that the micellar length increases with increasing concentration c or with raising temperature T irrespective of the composition of the surfactant mixtures. The length of the Mix1 and Mix2 micelles at fixed c and T steeply increases with increasing weight fraction wt of C14E5 in both of the surfactant mixtures, implying that the micelles greatly grow in length when the surfactant component with longer alkyl group or with shorter oxyethylene group increases in the mixture. The results are in line with the findings for the micelles of the single surfactant systems where the CiEj micelles grow in length to a greater extent for larger i and smaller j. Although the values of d and the spacing s between the adjacent surfactant molecules on the micellar surface do not significantly vary with composition of the surfactant mixture, the stiffness parameter lambda-1 remarkably decreases with wt in both Mix1 and Mix2 micelles, indicating that the stiffness of the micelle is controlled by the relative strength of the repulsive force due to the hydrophilic interactions between oxyethylene groups to the attractive one due to the hydrophobic interactions between alkyl groups among the surfactant molecules.
Low‐intensity magnetic fields alter operant behavior in rats (1986)

The present study demonstrates that operant behavior is affected by a combination of a 60-Hz magnetic field and a magnetostatic field 2.6 X 10(-5) T (about half the geomagnetic field). Rats exposed to this combination for 30 min consistently exhibited changes in the rate and pattern of responding during the differential reinforcement of low rate (DRL) component of a multiple fixed ratio (FR) DRL reinforcement schedule. By contrast, there were no measurable changes following exposure to the static field alone or to the oscillating field alone, even with a 10-fold increase in intensity (5 X 10(-5) to 5 X 10(-4) Trms). A cyclotron resonance mechanism has been suggested as a possible explanation for the observation that weak static magnetic fields modify the response of in vitro brain tissue to low-frequency magnetic fields. The choice of static field intensity Bo and frequency nu in the present study follows from the cyclotron resonance condition nu = (1/2 pi)(q/m)Bo, for singly charged lithium, an element in extensive use in the clinical treatment of affective disorders in humans. The present research is consistent with a cellular cyclotron resonance mechanism and tends to imply a functional dependence of behavior on the geomagnetic field.
Improving Accuracy in Word Class Tagging through the Combination of Machine Learning Systems (2001)

We examine how differences in language models, learned by different data-driven systems performing the same NLP task, can be exploited to yield a higher accuracy than the best individual system. We do this by means of experiments involving the task of morphosyntactic word class tagging, on the basis of three different tagged corpora. Four well-known tagger generators (hidden Markov model, memory-based, transformation rules, and maximum entropy) are trained on the same corpus data. After comparison, their outputs are combined using several voting strategies and second-stage classifiers. All combination taggers outperform their best component. The reduction in error rate varies with the material in question, but can be as high as 24.3% with the LOB corpus.
The ORIGAMI Project: Advanced tools for creating and mixing real and virtual content in film and TV production (2005)

The goal of the EC-funded IST project ORIGAMI was the development of advanced tools and new production techniques for high-quality and seamless integration of real and virtual content in film and TV productions. In particular, the project focused on pre-production tools for automatic virtual set creation through image-based 3-D modelling of environments and objects. One key goal of the project was to achieve real-time in-studio pre-visualisation of the virtual elements (objects and actors) of the extended set. In this contribution the studio pre-visualisation system that has been developed for the project is illustrated, and its usage within a high-end film and TV production environment is described. Furthermore an overview of the developed solutions for automatic generation of 3-D models of environments, static objects and (moving) actors is given.
SYNTHESIS OF PHTHALIMIDINES FROM SCHIFF BASES AND CARBON MONOXIDE (1955)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTSYNTHESIS OF PHTHALIMIDINES FROM SCHIFF BASES AND CARBON MONOXIDEShunsuke MurahashiCite this: J. Am. Chem. Soc. 1955, 77, 23, 6403–6404Publication Date (Print):December 1, 1955Publication History Published online1 May 2002Published inissue 1 December 1955https://doi.org/10.1021/ja01628a120RIGHTS & PERMISSIONSArticle Views1855Altmetric-Citations152LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (287 KB) Get e-Alerts Get e-Alerts
Cholesterol-dependent Localization of NAP-22 on a Neuronal Membrane Microdomain (Raft) (1999)

A membrane microdomain called raft has been under extensive study since the assembly of various signal-transducing molecules into this region has been envisaged. This domain is isolated as a low buoyant membrane fraction after the extraction with a nonionic detergent such as Triton X-100. The characteristic low density of this fraction is ascribed to the enrichment of several lipids including cholesterol. To clear the molecular mechanism of raft formation, several extraction methods were applied to solubilize raft components. Cholesterol extraction using methyl-beta-cyclodextrin was found to be effective to solubilize NAP-22, a neuron-enriched Ca(2+)-dependent calmodulin-binding protein as well as one of the main protein components of brain raft. Purified NAP-22 bound to the liposomes that were made from phosphatidylcholine and cholesterol. This binding was dependent on the amount of cholesterol in liposomes. Calmodulin inhibited this binding in a dose-dependent manner. These results suggest that the presence of a calcium-dependent regulatory mechanism works on the assembly of raft within the neuron.
CoMoNi Catalyst Texture and Surface Properties in Heavy Oil Processing. Part I: Hierarchical Macro/Mesoporous Alumina Support (2016)

A pair of mesoporous and hierarchical macro/mesoporous alumina-supported catalysts having distinct textural parameters have been chosen to elucidate the effect of texture on activity in hydrodesulfurization (HDS) and hydrodemetallization (HDM) of heavy tatar oil possessing extremely high viscosity and sulfur content. For monitoring catalyst properties, the samples have been investigated by XRD, XFS, XPS, EXAFS, SEM, TEM, FTIR, TPD-NH3, mercury porosimetry, and N2 adsorption methods. Among different factors such as support acidity, active component dispersion, and texture, the last one has been found to play the most significant role in this process. The hierarchical macro/mesoporous catalyst shows lower coking rate of the hydrotreated products, as well as higher HDS and HDM conversions despite its lower active component dispersion and decreased support acidity.
Microphase Separation Controlled β-Sheet Crystallization Kinetics in Fibrous Proteins (2009)

Silk is a naturally occurring fibrous protein with a multiblock chain architecture. As such, it has many similarities with synthetic block copolymers, including the possibility for β-sheet crystallization restricted within the crystallizable blocks. The mechanism of isothermal crystallization kinetics of β-sheet crystals in silk multiblock fibrous proteins is reported in this study. Kinetics theories, such as Avrami analysis which was established for studies of synthetic polymer crystal growth, are for the first time extended to investigate protein self-assembly in β-sheet rich Bombyx mori silk fibroin samples, using time-resolved Fourier transform infrared spectroscopy (FTIR), differential scanning calorimetry (DSC) and synchrotron real-time wide-angle X-ray scattering (WAXS). The Avrami exponent, n, was close to 2 for all methods and crystallization temperatures, indicating formation of β-sheet crystals in silk proteins is different from the 3-D spherulitic crystal growth found in synthetic polymers. Observations by scanning electron microscopy support the view that the protein structures vary during the different stages of crystal growth, and show a microphase separation pattern after chymotrypsin enzyme biodegradation. We present a model to explain the crystallization of the multiblock silk fibroin protein, by analogy to block copolymers: crystallization of β-sheets occurs under conditions of geometrical restriction caused by phase separation of the crystallizable and uncrystallizable blocks. This crystallization model could be widely applicable in other proteins with multiblock (i.e., crystallizable and noncrystallizable) domains.
Nonpeptidic angiotensin II antagonists: synthesis and in vitro activity of a series of novel naphthalene and tetrahydronaphthalene derivatives (1991)

Starting from the structure of the novel nonpeptidic angiotensin II antagonist DuP 753, a series of more rigid analogues was prepared by replacing the biphenyl part of DuP 753 with a naphthalene ring. Five different regioisomers (compounds 6a-e) were synthesized, and receptor binding in rat smooth muscle cell preparations as well as inhibition of angiotensin II induced contraction of rabbit aortic rings was measured and the order of potency was compared with predictions made on the basis of a molecular modeling study. In good agreement with the predictions, the 2,6-substituted regioisomer 6d and its analogue 7 (isomeric at the imidazole substituent) were found to be most potent, but were still weaker than DuP 753. Tetrahydronaphthalene derivatives with and without an additional methyl group in the alpha-position to the acidic function and with this same 2,6-substitution pattern (compounds listed in Table III) were then prepared with the expectation of getting a further increase in potency. Whereas the carboxylic acid derivatives 13a,b showed activity in the expected potency range, surprisingly no further potency increase was observed after replacement of the carboxylic acid function by a tetrazole (compounds 18a,b). These results may indicate that the compounds do not bind to the AT1 receptor in the same way as DuP 753.
TFAP2E Methylation Status and Prognosis of Patients with Radically Resected Colorectal Cancer (2014)

TFAP2E hypermethylation is associated with good clinical outcomes and may be considered as an independent prognostic factor in patients with curatively resected CRCs.
Micromachined pre-focused<i>M</i>×<i>N</i>flow switches for continuous multi-sample injection (2001)

In this paper we present a novel microfluidic chip capable of continuous multi-sample switching and injection for bio-analytical applications. The innovative device integrates two important microfluidic phenomena, including hydrodynamic focusing and valveless flow switching inside multi-ported microchannels. The multiple samples can be pre-focused to narrow streams and can then be continuously injected into desired outlet ports. In this study, a theoretical model based on the `flow-rate-ratio' method is first proposed to predict the performance of the microfluidic device. Then, a simple but reliable one-mask micromachining process is developed to fabricate the pre-focused M×N flow switch on a quartz substrate. The multi-sample switching and injection is then verified experimentally with the use of microscopic visualization of water sheath flows and dye-containing sample flows. The experimental data indicate that the multi-sample flows can be hydrodynamically pre-focused and then guided into the desired outlet ports precisely based on relative sheath and sample flow rates. The data predicted by the proposed theoretical model are highly consistent with the experimental results. It is also noted that the `pre-focusing' function added prior to multi-sample flow switching is crucial for precise sample injection. The novel microfluidic chip has great potential for high-throughput chemical analysis, cell fusion, fraction collection, fast sample mixing and many other applications in the field of micro-total-analysis systems.
Inhibition of Experimental Lung Metastasis by Aerosol Delivery of PEI–p53 Complexes (2000)

Mutations in the p53 tumor suppressor gene and the pathways mediated by the p53 protein are common in many human cancers. Replacement of functional p53 by gene therapy is a potential way of combating these cancers and the associated drug resistance and tumor growth. Aerosol delivery of genes is a noninvasive way of targeting genes to the lung for gene therapy. Here we demonstrate, using a murine melanoma lung metastasis model, that aerosol delivery of polyethyleneimine-p53 (PEI-p53) complexes inhibits the growth of lung metastasis. A significantly reduced number of visible foci were observed in C57BL/6 mice injected with B16-F10 melanoma and treated with PEI-p53 complexes by aerosol for 3 weeks at twice a week. Fifty percent of the mice in the PEI-p53-treated group exhibited no visible tumor foci. There was a significant reduction in the lung weights of p53-treated mice (P < 0.01) compared to control groups. The tumor burden was also significantly lower (P < 0.001) in mice treated with PEI-p53 complexes. No extrapulmonary metastasis was observed in the groups treated with PEI-p53 complexes compared to 50% of the mice in control groups, which showed metastasis to lymph nodes in the neck or abdomen. Treatment with PEI-p53 aerosol also led to about a 50% increase in the mean length of survival of the mice injected with B16-F10 cells. These data suggest that delivery of the p53 gene by aerosol using PEI as the gene delivery vector can inhibit the growth of lung metastasis.
Absence of the intestinal microbiota exacerbates hepatobiliary disease in a murine model of primary sclerosing cholangitis (2015)

GF mdr2(-/-) mice exhibit exacerbated biochemical and histological features of PSC and increased cholangiocyte senescence, a characteristic and potential mediator of progressive biliary disease. UDCA, a commensal microbial metabolite, abrogates senescence in vitro. These findings demonstrate the importance of the commensal microbiota and its metabolites in protecting against biliary injury and suggest avenues for future studies of biomarkers and therapeutic interventions in PSC.
A Generic Attack on Checksumming-Based Software Tamper Resistance (2005)

Self-checking software tamper resistance mechanisms employing checksums, including advanced systems as recently proposed by Chang and Atallah (2002) and Horne et al. (2002) have been promoted as an alternative to other software integrity verification techniques. Appealing aspects include the promise of being able to verify the integrity of software independent of the external support environment, as well as the ability to automatically integrate checksumming code during program compilation or linking. In this paper we show that the rich functionality of many modern processors, including UltraSparc and x86-compatible processors, facilitates automated attacks which defeat such checksumming by self-checking programs.