gebhart/patrepeval huggingface dataset:
Adenovirus-mediated p53 gene therapy and paclitaxel have synergistic efficacy in models of human head and neck, ovarian, prostate, and breast cancer. (1998)

Synergy (or antagonism) between two chemical agents is an in vitro empirical phenomenon, in which the observed effect of the combination is more (or less) than what would be predicted from the effects of each agent working alone. Although mathematical synergy is not directly provable in the clinical setting, it does predict a favorable outcome when the two therapeutics are combined in vivo and strongly suggests the presence of in vivo synergy. In contrast, overt antagonism warns of future problems. Sophisticated three-dimensional statistical modeling was used to evaluate the presence of synergistic, additive, or antagonistic efficacy between adenovirus (Ad)-mediated p53 gene therapy (p53 Ad) and paclitaxel (Taxol) in a panel of human tumor cell lines. Cells were either pretreated with paclitaxel 24 h before p53 Ad or treated with both agents simultaneously. Cell proliferation was measured 3 days later. Paclitaxel had synergistic or additive efficacy with p53 gene therapy. In no case was the interaction antagonistic. Cell cycle analysis demonstrated that p53 Ad arrested cells in G0/G1 prior to apoptotic cell death, whereas paclitaxel arrested cells in G2-M prior to apoptotic cell death. When combined, the relative concentration of each agent determined the dominant cellular response. These results are consistent with the previously reported cell cycle effects of p53 or paclitaxel, respectively; however, these data fail to explain the observed drug synergy. We found that low concentrations of paclitaxel (1-14 nM) increased the number of cells transduced by recombinant Ad 3-35% in a dose-dependent manner, which is one possible mechanism for the observed synergy. Of particular note, the concentrations of paclitaxel responsible for increased Ad transduction were lower than the concentrations required for microtubule condensation. The efficacy of combination therapy was also evaluated in vivo. In the p53null SK-OV-3 xenograft model of ovarian cancer, a dosing schedule of p53 Ad that, by itself, had a relatively minimal effect on tumor burden (16%) caused a much greater decrease in tumor burden (55%) when combined with paclitaxel. Greater combined efficacy was also observed in the p53mut DU-145 prostate, p53mut MDA-MB-468 breast, and p53mut MDA-MB-231 breast cancer xenograft models in vivo. In summary, p53 Ad for cancer shows enhanced efficacy when combined with paclitaxel. This combination is recommended for clinical cancer trials.
SmartInspect: solidity smart contract inspector (2018)

Solidity is a language used for smart contracts on the Ethereum blockchain. Smart contracts are embedded procedures stored with the data they act upon. Debugging smart contracts is a really difficult task since once deployed, the code cannot be reexecuted and inspecting a simple attribute is not easily possible because data is encoded. In this paper, we address the lack of inspectability of a deployed contract by analyzing contract state using decompilation techniques driven by the contract structure definition. Our solution, SmartInspect, also uses a mirror-based architecture to represent locally object responsible for the interpretation of the contract state. SmartInspect allows contract developers to better visualize and understand the contract stored state without needing to redeploy, nor develop any ad-hoc code.
High-Intensity Focused Ultrasound: Current Potential and Oncologic Applications (2007)

Although a great deal about HIFU physics is understood, its clinical applications are currently limited, and multiple trials are underway worldwide to determine its efficacy.
Phenotype and Function of Peripheral and Prostatic Lymphocytes in Patients with Benign Prostatic Hyperplasia (1994)

In a previous report, we demonstrated intense lymphocytic infiltration of all benign prostatic hypertrophy (BPH) tissues analyzed in conjunction with HLA-DR expression on normally MHC-class-II-negative prostate epithelial cells. The composition of these infiltrates (70 to 80% CD3+ T-cells, but no granulocytes) resembles the situation seen in immune responses against altered self or self rather than against foreign antigens (infection). In the present study, phenotypic and functional immunoassays were used in order to investigate whether T-cells in BPH are indeed activated, and whether this activation is systemic or restricted locally to the prostate. Analysis of T-cell activation marker expression and proliferation requirements provided substantial evidence that these infiltrating lymphocytes, in contrast to their peripheral counterparts, are chronically activated. Since local accumulation of activated lymphocytes can cause tissue destruction, high concentrations of cytokines, and consequently tissue rebuilding, this process might contribute to the pathogenesis of BPH.
Asynchronous multimedia multihop wireless networks (2002)

Personal communications and mobile computing will require a wireless network infrastructure which is fast deployable, possibly multihop, and capable of multimedia service support. The first infracture of this type was the packet radio network (PRNET), developed in the 70's to address the battlefield and disaster recovery communication requirements. PRNET was totally asynchronous and was based on a completely distributed architecture. It handled datagram traffic reasonably well, but did not offer efficient multimedia support. Recently, under the WAMIS and Glomo ARPA programs several mobile, multimedia, multihop (M/sup 3/) wireless network architectures have been developed, which assume some form of synchronous, time division infrastructure. The synchronous time frame leads to efficient multimedia support implementations. However, it introduces more complexity and is less robust in the face of mobility and channel fading. In this paper; we examine the impact of synchronization on wireless M/sup 3/ network performance. First, we introduce MACA/PR, an asynchronous network based on the collision avoidance MAC scheme employed in the IEEE 802.11 standard. There, we evaluate and compare several wireless packet networks ranging from the total asynchronous PRNET to the synchronized cluster TDMA network. We examine the tradeoffs between time synchronization and performance in various traffic and mobility environments.
A Perspective on AIDS Vaccines (1996)

To many people it is unfathomable that after more than 10 years of research, there is no human immunodeficiency virus (HIV) vaccine ready for large-scale efficacy trials. A complex web of scientific, political, and social issues remains to be untangled. Barry Bloom (Howard Hughes Medical Institute, Albert Einstein College of Medicine, USA) takes a hard look at the fundamental questions that must be answered before a vaccine against acquired immunodeficiency syndrome (AIDS) becomes a reality.
Transcription initiation from the dihydrofolate reductase promoter is positioned by HIP1 binding at the initiation site. (1990)

We have identified a sequence element that specifies the position of transcription initiation for the dihydrofolate reductase gene. Unlike the functionally analogous TATA box that directs RNA polymerase II to initiate transcription 30 nucleotides downstream, the positioning element of the dihydrofolate reductase promoter is located directly at the site of transcription initiation. By using DNase I footprint analysis, we have shown that a protein binds to this initiator element. Transcription initiated at the dihydrofolate reductase initiator element when 28 nucleotides were inserted between it and all other upstream sequences, or when it was placed on either side of the DNA helix, suggesting that there is no strict spatial requirement between the initiator and an upstream element. Although neither a single Sp1-binding site nor a single initiator element was sufficient for transcriptional activity, the combination of one Sp1-binding site and the dihydrofolate reductase initiator element cloned into a plasmid vector resulted in transcription starting at the initiator element. We have also shown that the simian virus 40 late major initiation site has striking sequence homology to the dihydrofolate reductase initiation site and that the same, or a similar, protein binds to both sites. Examination of the sequences at other RNA polymerase II initiation sites suggests that we have identified an element that is important in the transcription of other housekeeping genes. We have thus named the protein that binds to the initiator element HIP1 (Housekeeping Initiator Protein 1).
Combining Residual Networks with LSTMs for Lipreading (2017)

We propose an end-to-end deep learning architecture for word-level visual speech recognition. The system is a combination of spatiotemporal convolutional, residual and bidirectional Long Short-Term Memory networks. We train and evaluate it on the Lipreading In-The-Wild benchmark, a challenging database of 500-size target-words consisting of 1.28sec video excerpts from BBC TV broadcasts. The proposed network attains word accuracy equal to 83.0, yielding 6.8 absolute improvement over the current state-of-the-art, without using information about word boundaries during training or testing.
Characterization of the murine T cell surface molecule, designated L3T4, identified by monoclonal antibody GK1.5: similarity of L3T4 to the human Leu-3/T4 molecule. (1983)

Monoclonal antibody GK1.5 recognizes a previously undescribed murine T cell surface molecule, designated L3T4, which migrates on SDS-PAGE under reducing conditions as a single band with an apparent m.w. of 52,000. L3T4 is expressed by approximately 80% of thymocytes and by approximately 20% of spleen cells. There appears to be poor correlation between expression of L3T4 by functional T cell clones and expression of Lyt-2, expression of the cytolytic phenotype, and class I MHC antigen reactivity. On the other hand, both a class II MHC antigen-reactive HTL clone and an Lyt-1- Mls-reactive HTL clone express L3T4. Analysis of the effect of mAb GK1.5 on PFC responses in adoptive transfer suggests that L3T4 is expressed by the helper/inducer subset of murine T cells. Expression of L3T4 by murine T cells, however, may correlate primarily with class II MHC antigen reactivity rather than with functional phenotype; mAb GK1.5 profoundly blocks antigen-specific cytolysis by the cloned class II MHC antigen-reactive CTL line A15-1.17. Antigen-specific cytolysis by A15-1.17 is blocked by mAb GK1.5 at a step before the lethal hit. Collectively, the flow cytometric, functional, and biochemical data indicate that L3T4 is similar to the human Leu-3/T4 molecule.
TNF-Alpha as a Therapeutic Target in Inflammatory Diseases, Ischemia- Reperfusion Injury and Trauma (2009)

Tumor necrosis factor-alpha (TNF-alpha) is a central regulator of inflammation, and TNF-alpha antagonists may be effective in treating inflammatory disorders in which TNF-alpha plays an important pathogenetic role. Recombinant or modified proteins are an emerging class of therapeutic agents. To date, several recombinant or modified proteins which acts as TNF antagonists have been disclosed. In particular, antibodies that bind to and neutralise TNF have been sought as a means to inhibit TNF activity. Inhibition of TNF has proven to be an effective therapy for patients with rheumatoid arthritis and other forms of inflammatory disease including psoriasis, psoriatic arthritis, and ankylosing spondylitis, inflammatory bowel disease. Additionally, the efficacy of preventing septic shock and AIDS has been questioned as a result of recent research. The currently available therapies include a soluble p75 TNF receptor:Fc construct, etanercept, a chimeric monoclonal antibody, infliximab, and a fully human monoclonal antibody, adalimumab. Certolizumab pegol is a novel TNF inhibitor which is an antigen-binding domain of a humanized TNF antibody coupled to polyethylene glycol (PEG) to increase half-life, and thus is Fc-domain-free. In this review, we discuss briefly the present understanding of TNF-alpha-mediated biology and the current therapies in clinical use, and focus on some of the new therapeutic approaches with small-molecule inhibitors. Moreover, we examine recent reports providing important insights into the understanding of efficacy of thalidomide and its analogs, as TNF-alpha activity inhibitories, especially in therapies of several inflammatory diseases within the nervous system.
A Maize (<i>E</i>)-β-Caryophyllene Synthase Implicated in Indirect Defense Responses against Herbivores Is Not Expressed in Most American Maize Varieties (2008)

The sesquiterpene (E)-beta-caryophyllene is emitted by maize (Zea mays) leaves in response to attack by lepidopteran larvae like Spodoptera littoralis and released from roots after damage by larvae of the coleopteran Diabrotica virgifera virgifera. We identified a maize terpene synthase, Terpene Synthase 23 (TPS23), that produces (E)-beta-caryophyllene from farnesyl diphosphate. The expression of TPS23 is controlled at the transcript level and induced independently by D. v. virgifera damage in roots and S. littoralis damage in leaves. We demonstrate that (E)-beta-caryophyllene can attract natural enemies of both herbivores: entomopathogenic nematodes below ground and parasitic wasps, after an initial learning experience, above ground. The biochemical properties of TPS23 are similar to those of (E)-beta-caryophyllene synthases from dicotyledons but are the result of repeated evolution. The sequence of TPS23 is maintained by positive selection in maize and its closest wild relatives, teosinte (Zea sp) species. The gene encoding TPS23 is active in teosinte species and European maize lines, but decreased transcription in most North American lines resulted in the loss of (E)-beta-caryophyllene production. We argue that the (E)-beta-caryophyllene defense signal was lost during breeding of the North American lines and that its restoration might help to increase the resistance of these lines against agronomically important pests.
Effect of probiotic mix (<i>Bifidobacterium bifidum, Bifidobacterium lactis, Lactobacillus acidophilus</i>) in the primary prevention of eczema: a double‐blind, randomized, placebo‐controlled trial (2009)

Controversy exists regarding the preventive effect of probiotics on the development of eczema or atopic dermatitis. We investigated whether supplementation of probiotics prevents the development of eczema in infants at high risk. In a randomized, double-blind, placebo-controlled trial, 112 pregnant women with a family history of allergic diseases received a once-daily supplement, either a mixture of Bifidobacterium bifidum BGN4, B. lactis AD011, and Lactobacillus acidophilus AD031, or placebo, starting at 4-8 wks before delivery and continuing until 6 months after delivery. Infants were exclusively breast-fed during the first 3 months, and were subsequently fed with breastmilk or cow's milk formula from 4 to 6 months of age. Clinical symptoms of the infants were monitored until 1 yr of age, when the total and specific IgE against common food allergens were measured. A total of 68 infants completed the study. The prevalence of eczema at 1 yr in the probiotic group was significantly lower than in the placebo group (18.2% vs. 40.0%, p=0.048). The cumulative incidence of eczema during the first 12 months was reduced significantly in probiotic group (36.4% vs. 62.9%, p=0.029); however, there was no difference in serum total IgE level or the sensitization against food allergens between the two groups. Prenatal and postnatal supplementation with a mixture of B. bifidum BGN4, B. lactis AD011, and L. acidophilus AD031 is an effective approach in preventing the development of eczema in infants at high risk of allergy during the first year of life.
Increased Fragmentation Efficiency of Ions in a Low Pressure Linear Ion Trap with an Added dc Octopole Field (2005)

In-trap fragmentation of ions in a hybrid linear ion trap triple quadrupole mass spectrometer occurs at pressures about 5e-5 torr. At these low pressures, efficient fragmentation of heavy ions (such as the singly charged homogenously substituted triazatriphosphorine of mass 2721.89 Da) can take a long time because of the relatively low collision frequency with the background gas and the high internal energy content required to produce fragmentation. Increasing the amplitude used for dipolar excitation leads to loss of the ion upon the quadrupole rods. In the work presented here, the addition of a dc octopolar field to a linear ion trap is described. The dc octopolar field was created by the addition of four auxiliary electrodes situated between the quadrupole rods at a distance of 10 mm from the axis. The inclusion of the dc octopolar field was shown to cause the ions’ frequency of motion to shift out of phase with the excitation signal at high radial amplitudes. This resulted in beat-like trajectories with periods of excitation and de-excitation as the ions’ frequency of motion shifted in and out of phase with the excitation signal. This led to a reduction in the loss of ions on the quadrupole rods during the excitation process. The result is an increased fragmentation efficiency relative to the fragmentation efficiency obtained when using an LIT constructed of round rods only. The inclusion of the dc octopolar field allowed the ion to be fragmented more efficiently in a relatively short excitation period.
Wireless smart implants dedicated to multichannel monitoring and microstimulation (2005)

Innovative circuits and systems techniques are required to build advanced smart medical devices (SMD). The high reliability and very low power consumption are among the main criteria that must be given priority to implement in such implantable and wirelessly controlled microsystems. A typical device is composed of several integrated modules to be assembled on a thin substrate providing placement flexibility in the body. Monitoring of electrode-tissue interface condition is needed for enhanced safety, and for enabling troubleshooting after implantation. In order to improve controllability and observability, fully integrated binary phase-shift-keying (BPSK) demodulation combined with a passive modulation method allows full-duplex data high data rate communication between external controllers and implants. Case studies such as peripheral nerve interfaces to recuperate bladder functions, cortical multichannel stimulator, as well as cortical monitoring devices are reported.
Styrene Plastics (2006)

Abstract This article examines both styrene plastics, including such commodity styrenic resins as general‐purpose polystyrene, high impact polystyrene, styrene–acrylonitrile, and acrylonitrile–butadiene–styrene, and specialty resins such as ionomers, styrene derivatives, and tactic polystyrenes. Topics discussed include styrenic plastic properties such as stress–strain, creep, stress relaxation, fatigue, impact strength, surface appearance, and melt properties, as well as rubber modification and glass filling of styrene plastics. Styrene plastics manufacturing processes and the chemistry of styrene polymerization are both described, the former with an emphasis on the most widely used continuous free‐radical reaction designs, the latter mainly on the industrially important free‐radical mechanism; other mechanisms by which styrene can be polymerized, ie, anionic, cationic, and Ziegler‐Natta, are also mentioned. The description of free‐radical polymerization of styrene covers spontaneous initiation, chemical initiators, chain‐transfer agents, and living free‐radical polymerization. Copolymerization of styrene with other monomers is also discussed. Other topics covered include fabrication processes, ie, injection molding, extrusion, thermoforming, and blow molding; additives; economic aspects; characterization techniques; health and safety issues; foamed polystyrene; and environmental issues, including recycling.
Hysteresis Analysis Based on the Ferroelectric Effect in Hybrid Perovskite Solar Cells (2014)

The power conversion efficiency (PCE) of CH3NH3PbX3 (X = I, Br, Cl) perovskite solar cells has been developed rapidly from 6.5 to 18% within 3 years. However, the anomalous hysteresis found in I-V measurements can cause an inaccurate estimation of the efficiency. We attribute the phenomena to the ferroelectric effect and build a model based on the ferroelectric diode to explain it. The ferroelectric effect of CH3NH3PbI3-xClx is strongly suggested by characterization methods and the E-P (electrical field-polarization) loop. The hysteresis in I-V curves is found to greatly depend on the scan range as well as the velocity, which is well explained by the ferroelectric diode model. We also find that the current signals show exponential decay in ∼10 s under prolonged stepwise measurements, and the anomalous hysteresis disappears using these stabilized current values. The experimental results accord well with the model based on ferroelectric properties and prove that prolonged stepwise measurement is an effective way to evaluate the real efficiency of perovskite solar cells. Most importantly, this work provides a meaningful perspective that the ferroelectric effect (if it really exists) should be paid special attention in the optimization of perovskite solar cells.
“Sweet Spot” or “Sweet Zone”? Modal Analysis of a Wooden Baseball Bat for Design Optimization (2003)

This paper describes modal testing of a wooden baseball bat with the purpose of finding the peak frequencies and vibration modes and their relation to the so-called “sweet spot”. Initial vibration testing was done by performing a tap test along a Louisville Slugger wooden baseball bat. The bat was suspended by elastic rubber bands to approximate free-free boundary conditions. The peak frequencies and bending mode shapes of the baseball bat were obtained. To verify the results, a modal analysis of the baseball bat was performed to simulate the structure’s dynamic behavior. The animated model validated the accuracy of the parameters obtained in the tap test. The bending mode shapes were also compared to the bending elastic mode shapes of a uniform, homogeneous beam undergoing no shear distortion. The exact solution of the beam equation of motion was solved. The mode shapes were plotted to compare them with the ones obtained from the baseball bat. This comparison indicated that the bat and the beam structures presented the same type of bending mode.
Review: Dietary Flavonoids and Cancer Risk: Evidence From Human Population Studies (2004)

High dietary intake of fruits and vegetables is consistently associated with a reduced risk of common human cancers, including cancers of the lung, breast, prostate, and colon. It is unknown which bioactive compound or compounds in plant foods provide the chemoprotective effects. One class of compounds currently under investigation is flavonoids, a large group of compounds with similar structure, consisting of two phenolic benzene rings linked to a heterocyclic pyran or pyrone. Although there are numerous in vitro and animal model data suggesting that flavonoids influence important cellular and molecular mechanisms related to carcinogenesis, such as cell cycle control and apoptosis, there are limited data from human population studies. This article reviews data from four cohort studies and six case-control studies, which have examined associations of flavonoid intake with cancer risk. There is consistent evidence from these studies that flavonoids, especially quercetin, may reduce the risk of lung cancer. Further research using new dietary databases for food flavonoid content is needed to confirm these findings before specific public health recommendations about flavonoids can be formulated.