gebhart/patrepeval huggingface dataset:
Epidermal growth factor receptor threonine and serine residues phosphorylated in vivo. (1988)

The epidermal growth factor (EGF) receptor is regulated by EGF-stimulated autophosphorylation and by phorbol ester-stimulated, protein kinase C (Ca2+/phospholipid-dependent enzyme) mediated phosphorylation at identified sites. The EGF receptor contains additional phosphorylation sites including a prominent phosphothreonine and several phosphoserines which account for the majority of phosphate covalently bound to the receptor in vivo. We have identified three of these sites in EGF receptor purified from 32P-labeled A431 cells. The major phosphothreonine was identified as threonine 669 in the EGF receptor sequence. Phosphoserine residues were identified as serines 671 and 1046/1047 of the EGF receptor. Two other phosphoserine residues were localized to tryptic peptides containing multiple serine residues located carboxyl-terminal to the conserved protein kinase domain. The amino acid sequences surrounding the three identified phosphorylation sites are highly conserved in the EGF receptor and the protein products of the v-erb B and neu oncogenes. Analysis of predicted secondary structure of the EGF receptor reveals that all of the phosphorylation sites are located near beta turns. In A431 cells phosphorylation of the serine residues was dependent upon serum. In mouse B82 L cells transfected with a wild type human EGF receptor. EGF increased the 32P content in all tryptic phosphopeptides. A mutant EGF receptor lacking protein tyrosine kinase activity was phosphorylated only at threonine 669. Regulated phosphorylation of the EGF receptor at these threonine and serine residues may influence aspects of receptor function.
Enhanced recovery engineering including well design, completion and production practices (1995)

This paper reviews the design, completion and production practices associated with miscible phase recovery of oil during enhanced recovery operations. It addresses design and operation of both injectors and production wells, optimization techniques for well and tubing, and artificial lift design and operation. Finally, the article address pressure maintenance, corrosion control and general process control guidelines.
Partial Purification and Characterization of the Porcine Brain Enzyme Hydrolyzing and Synthesizing Anandamide (1995)

Anandamide (arachidonylethanolamide) is known as an endogenous agonist for cannabinoid receptors. An amidohydrolase, which hydrolyzed anandamide, was solubilized from the microsomal fraction of porcine brain with 1% Triton X-100. The enzyme was partially purified by Phenyl-5PW hydrophobic chromatography to a specific activity of approximately 0.37 mumol/min/mg of protein at 37 degrees C. As assayed with 14C-labeled substrates, the apparent Km value for anandamide was 60 microM, and anandamide was more active than ethanolamides of linoleic, oleic, and palmitic acids. Ceramidase and protease activities were not detected in our enzyme preparation. The purified enzyme also synthesized anandamide from free arachidonic acid in the presence of a high concentration of ethanolamine with a specific activity of about 0.16 mumol/min/mg of protein at 37 degrees C. On the basis of cochromatographies, pH dependence, heat inactivation, and effects of inhibitors such as arachidonyl trifluoromethyl ketone, p-chloromercuribenzoic acid, diisopropyl fluorophosphate, and phenylmethylsulfonyl fluoride, it was suggested that the anandamide amidohydrolase and synthase activities were attributable to a single enzyme protein.
Multiple domains of the RNA polymerase I activator hUBF interact with the TATA-binding protein complex hSL1 to mediate transcription. (1992)

Recent evidence suggests that transcription initiation by all three eukaryotic RNA polymerases involves a complex of the TATA-binding protein (TBP) and multiple TBP-associated factors (TAFs). Here, we map the functional domains of the nucleolar HMG box protein hUBF, which binds to the human rRNA promoter and stimulates transcription by RNA polymerase I through cooperative interactions with a distinct TBP-TAF complex, hSL1. DNase I footprint analysis of mutant hUBF proteins and of a synthetic peptide of 84 amino acids reveals that HMG box 1 is necessary and sufficient for DNA sequence specificity, whereas other HMG boxes and the amino terminus modulate the binding efficiency. hUBF contains multiple activation domains that include the acidic carboxyl terminus and three HMG boxes. HMG boxes 3 and 4 and the acidic tail contribute significantly to an extended footprinting pattern in the presence of hSL1, suggestive of specific protein-protein interactions. Moreover, the inability of xUBF from Xenopus laevis to form an initiation complex with hSL1 can be overcome by hybrid proteins containing human HMG box 4 and the acidic carboxyl terminus. These results strongly suggest an important role of transcription activation domains of hUBF in mediating interactions with the TBP-TAF complex hSL1.
Import, processing, and two-dimensional NMR structure of a linker-deleted signal peptide of rat liver mitochondrial aldehyde dehydrogenase. (1993)

Previous NMR studies (Karslake, C., Piotto, M. E., Pak, Y. M., Weiner, H., and Gorenstein, D. G. (1990) Biochemistry 29, 9872-9878) had shown that a 22-amino acid signal peptide of rat liver aldehyde dehydrogenase (ALDH) when bound to a micelle had two amphiphilic alpha-helices, one located at the N terminus and the other at the C terminus. It was shown that deletion of either helix caused the precursor protein not to be imported (Wang, Y., and Weiner, H., (1993) J. Biol. Chem. 268, 4759-4765). The two helices are separated by a Arg-Gly-Pro flexible "linker" region, and to test the role of this linker region in the import and processing of the precursor protein, we deleted it from the ALDH signal peptide and precursor protein. The 19-amino acid signal peptide of ALDH, to which has been added 3 residues at the C terminus and from which has been deleted the 3-residue flexible linker region, has been studied by two-dimensional NMR in a dodecylphosphocholine micelle. In this membrane-like environment the peptide contains a single alpha-helical segment that extends almost the entire length of the peptide. NH exchange experiments show residues on the hydrophobic face of the peptide to exchange much more slowly than those of the hydrophilic face. Combined with the previous study, these results suggest that precursor protein import simply requires a sufficiently long amphiphilic helix (or helices) to bind stably to the membrane. The N and C helices of native ALDH are only about 6-8 residues long; this represents only about two turns of a helix, and either helix on its own does not provide enough stabilization to ensure folding and binding to the membrane. The linker-deleted ALDH peptide contains a single helix of 12-14 residues that is long enough to provide a hydrophobic surface that can stably interact with the hydrophobic interior of the membrane. The function of the C helix in the native signal peptide is therefore to enhance the stability and binding of the N-terminal signal to the membrane. Significantly, unlike native ALDH precursor protein, the linker-deleted signal peptide precursor protein could no longer be processed after import into mitochondria. As explained by modeling of the alpha-helix and the NH exchange rate data, the precursor protein requires that the first several residues of the mature protein be part of the hydrophobic membrane associated face of the helix.(ABSTRACT TRUNCATED AT 400 WORDS)
Tissue factor expression correlates with disease‐specific survival in patients with node‐negative muscle‐invasive bladder cancer (2007)

Tissue factor (TF), a transmembrane glycoprotein responsible for initiating the extrinsic pathway of blood coagulation plays a key role in cancer growth, metastasis and angiogenesis. Various studies have demonstrated the prognostic potential of TF expression in several cancers. However, its role in bladder cancer is unclear. This study evaluated the prognostic potential of TF expression in muscle-invasive bladder tumors from patients treated with radical cystectomies. Immunohistochemical staining using a monoclonal antibody (mAb) anti-TF was carried out on sections of tissue microarray blocks containing cores of muscle-invasive bladder tumors (4 cores/tumor) from 218 patients. The intensity of the staining was evaluated on a scale from 0 to 3 by two independent observers who were both unaware of the clinicopathological characteristics of the samples. TF was expressed in 77.6% of tumors, independently from baseline characteristics (age, gender, stage and grade) as assessed using the chi(2) and Student t tests. During follow-up (median: 2.6 years), 45.4% of the patients died from the progression of their cancer. Kaplan-Meier survival showed that among the 103 patients with node-negative (N0) transitional cell carcinoma (TCC), those with TF-positive tumors had shorter bladder cancer-specific survival (p = 0.0276). Moreover, multivariate Cox regression analysis showed they had a 3.15-fold greater risk of dying from bladder cancer (95% CI: 1.1-9.0; p = 0.032). In conclusion, TF expression was an independent predictor of disease-specific survival in N0 muscle-invasive TCCs treated by radical cystectomy and therefore, might help identify patients at higher risk of disease progression. These patients could potentially benefit from adjuvant chemotherapy.
Nuclear‐cytoplasmic transport of EGFR involves receptor endocytosis, importin β1 and CRM1 (2006)

Many receptor tyrosine kinases (RTKs) can be detected in the cell nucleus, such as EGFR, HER-2, HER-3, HER-4, and fibroblast growth factor receptor. EGFR, HER-2 and HER-4 contain transactivational activity and function as transcription co-factors to activate gene promoters. High EGFR in tumor nuclei correlates with increased tumor proliferation and poor survival in cancer patients. However, the mechanism by which cell-surface EGFR translocates into the cell nucleus remains largely unknown. Here, we found that EGFR co-localizes and interacts with importins alpha1/beta1, carriers that are critical for macromolecules nuclear import. EGFR variant mutated at the nuclear localization signal (NLS) is defective in associating with importins and in entering the nuclei indicating that EGFR's NLS is critical for EGFR/importins interaction and EGFR nuclear import. Moreover, disruption of receptor internalization process using chemicals and forced expression of dominant-negative Dynamin II mutant suppressed nuclear entry of EGFR. Additional evidences suggest an involvement of endosomal sorting machinery in EGFR nuclear translocalization. Finally, we found that nuclear export of EGFR may involve CRM1 exportin as we detected EGFR/CRM1 interaction and markedly increased nuclear EGFR following exposure to leptomycin B, a CRM1 inhibitor. Collectively, these data suggest the importance of receptor endocytosis, endosomal sorting machinery, interaction with importins alpha1/beta1, and exportin CRM1 in EGFR nuclear-cytoplasmic trafficking. Together, our work sheds light into the nature and regulation of the nuclear EGFR pathway and provides a plausible mechanism by which cells shuttle cell-surface EGFR and potentially other RTKs through the nuclear pore complex and into the nuclear compartment.
A highly-integrated SiGe BiCMOS WCDMA transmitter IC (2005)

A highly-integrated SiGe BiCMOS WCDMA transmitter IC consists of VHF, UHF chains, and synthesizers. At 6 dBm output power, it consumes 79 mA at 2.7 V, with a 5% r.m.s. EVM and -42 dBc ACLR at 5 MHz offset. In-band and receive-band output noise are -128 and -135 Bm/Hz, respectively. Fully integrated PLLs use on-chip VCO tanks and require no off-chip loop filters.
Advanced hydrogen storage alloys for Ni/MH rechargeable batteries (2010)

Hydrogen storage alloys are of particular interest as a novel group in functional materials owing to their potential and practical applications in Ni/MH rechargeable batteries. This review is devoted to the specific alloy families developed for high-energy and high-power Ni/MH batteries in the last decades, especially for EV, HEV and PHEV applications. The scope of the work encompasses principles of Ni/MH batteries, electrochemical hydrogen storage thermodynamics and kinetics, prerequisites for hydrogen storage electrode alloys and recent advances in hydrogen storage electrode alloys. Rare earth AB5-type alloys, Ti- and Zr-based AB2-type alloys, Mg-based amorphous/nanocrystalline alloys, rare earth-Mg–Ni-based alloys and Ti–V-based alloys are highlighted. Additionally, the challenges met in developing advanced hydrogen storage alloys for Ni/MH rechargeable batteries are pointed out and some research directions are suggested.
A novel radioiodinated high affinity ligand for the D<sub>2</sub>‐dopamine receptor (1984)

A novel high affinity dopaminergic ligand, N-(p-aminophenethyl)spiroperidol, has been synthesized and radioiodinated to a specific radioactivity of 2175 Ci/mmol. Binding of this ligand to bovine anterior pituitary membranes is: rapid (40-60 min to equilibrium at 25 degrees C) and reversible (t1/2 = 1 h at 25 degrees C); saturable and of high affinity (KD approximately 20 pM) and displays a typical D2-dopaminergic specificity. The ligand, which identifies the same number of receptor sites as other tritiated antagonist ligands, can be used in different tissues and preparations to delineate the characteristics of the D2 receptor. Thus, this high affinity, high specific radioactivity ligand (N-(p-amino-m-[125I]iodophenethyl)spiroperidol) represents a tool which until now had not been available for the characterization of the D2-dopamine receptor.
Comparison of the behavior of CHO cells during cultivation in 24-square deep well microplates and conventional shake flask systems (2014)

In biopharmaceutical production, the optimization of cell culture media and supplementation is a vital element of process development. Optimization is usually achieved through the screening of multiple media, feed and feeding strategies. However, most screening is performed in shake flasks, which makes the screening process very time consuming and inefficient. The use of small scale culture systems for the screening process can aid in the ability to screen multiple formulations during process development. In order to assess the suitability of 24 deep well (24DW) plates with the Duetz sandwich-covers as a small scale culture system for process development, we have tested growth and production performance of CHO cells in 24DW plates and conventional shake flask cultures. Multiple studies were performed to assess well-to-well and plate-to-plate variability in 24DW plates. Additional studies were performed to determine the applicability of 24DW plates for cell culture medium and supplement screening in batch and fed batch processes. Cultures in 24DW plates exhibited similar kinetics in growth, viability and protein production to those cultured in shake flasks, suggesting that 24DW plates with Duetz sandwich-covers can be effectively used for high throughput cell culture screening.
Investigation of SiO2 layers deposited by plasma decomposition of tetra-ethoxy silane in a planar reactor (1978)

SiO2 layers on Si substrates are obtained in planar reactor by decomposition of tetra-ethoxy silane in oxygen plasma. The layers deposited at substrate temperature of 300 °C show some porosity, hygroscopicity, increased etching rate, and water incorporated, so that MOS structures that use such layers have unstable CU curves and high density of interface states. These characteristics can substantially be improved after annealing at 400 °C in H2. The etching rate also decreased but reached the value that is characteristic of thermal SiO2 only after high temperature annealing. SiO2-Schichten auf Si-Substraten werden durch Zersetzung von Tetraethoxysilan im Sauerstoffsplasma eines Planarreaktors erhalten. Die Schichten, die bei einer Substrattemperatur von 300 °C abgeschieden werden, zeigen Porosität, Hygroskopie, erhöhte Ätzrate und eingeschlossenes Wasser, so daß MOS Strukturen, die aus diesen Schichten hergestellt werden, unstabile CU-Kurven und hohe Interface-Zustandsdichten besitzen. Nach Tempern bei 400 °C in H2-Atmosphäre werden diese Charakteristiken wesentlich verbessert. Obwohl sich die Ätzrate verringert, erreicht sie den für thermisches SiO2 typischen Wert nur nach einer Hochtemperaturbehandlung.
Novel Carboxylic Acid and Carboxamide Protective Groups Based on the Exceptional Stabilization of the Cyclopropylmethyl Cation (1995)

ADVERTISEMENT RETURN TO ISSUEPREVArticleNEXTNovel Carboxylic Acid and Carboxamide Protective Groups Based on the Exceptional Stabilization of the Cyclopropylmethyl CationLouis A. Carpino, Hann Guang Chao, Shahnaz Ghassemi, E. M. E. Mansour, Christoph Riemer, Ralf Warrass, Dean Sadat-Aalaee, George A. Truran, Hideko Imazumi, , Holger Wenschuh, Michael Beyermann, Michael Bienert, Hitesh Shroff, Fernando Albericio, Salvatore A. Triolo, Nuria A. Sole, and Steven A. KatesCite this: J. Org. Chem. 1995, 60, 24, 7718–7719Publication Date (Print):December 1, 1995Publication History Published online1 May 2002Published inissue 1 December 1995https://pubs.acs.org/doi/10.1021/jo00129a005https://doi.org/10.1021/jo00129a005research-articleACS PublicationsRequest reuse permissionsArticle Views1134Altmetric-Citations27LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InRedditEmail Other access optionsGet e-AlertscloseSupporting Info (3)»Supporting Information Supporting Information Get e-Alerts
Context-Aware Middleware Support for the Nomadic Mobile Services on Multi-homed Handheld Mobile Devices (2007)

Nowadays, a variety of handheld mobile devices are capable of connecting to the Internet using multiple network interfaces. This is referred to as multi-homing. In addition to this, enriched computation resources allow them to host nomadic mobile services and provide these services to the clients located anywhere in the Internet. Potential advantages of multi-homing for nomadic mobile services typically includes: an increased service availability and improved service performance. However, applications running on the handheld mobile devices either do not, or cannot, exploit multi-homing. In this paper we address the problem of providing infrastructural support to the nomadic mobile services that can fully exploit multi-homing. To this end we propose to incorporate multi-homing functionality and support in a middleware layer to reduce the complexity of the design and maintenance of these services. The proposed solution uses a context-aware computing approach to realize this functionality. We report the initial experimental results in the remote tele-monitoring of a patient equipped with a Body Area Network.
Cortical selective vulnerability in motor neuron disease: a morphometric study (2004)

Neuroimaging and neuropsychological studies have revealed that the primary motor cortex (PMC) and the extramotor cortical areas are functionally abnormal in motor neuron disease (MND, amyotrophic lateral sclerosis), but the nature of the cortical lesions that underlie these changes is poorly understood. In particular, there have been few attempts to quantify neuronal loss in the PMC and in other cortical areas in MND. We used SMI-32, an antibody against an epitope on non-phosphorylated neurofilament heavy chain, to analyse the size and density of SMI-32-positive cortical pyramidal neurons in layer V of the PMC, the dorsolateral prefrontal cortex (DLPFC) and the supragenual anterior cingulate cortex (ACC) in 13 MND and eight control subjects. There was a statistically significant reduction in the density of SMI-32-immunoreactive (IR) pyramidal neurons within cortical layer V in the PMC, the DLPFC and the ACC in MND subjects compared with controls [t (19) = 2.91, P = 0.009; estimated reduction 25%; 95% CI = 8%, 40%]. In addition, we studied the density and size of interneurons immunoreactive for the calcium-binding proteins calbindin-D(28K) (CB), parvalbumin (PV) and calretinin (CR) in the same areas (PMC, DLPFC and ACC). Statistically significant differences in the densities of CB-IR neurons were observed within cortical layers V (P = 0.003) and VI (P = 0.001) in MND cases compared with controls. The densities of CR- and PV-IR neurons were not significantly different between MND and control cases, although there were trends towards reductions of CR-IR neuronal density within the same layers and of PV-IR neuronal density within cortical layer VI. Loss of pyramidal neurons and of GABAergic interneurons is more widespread than has been appreciated and is present in areas associated with neuroimaging and cognitive abnormalities in MND. These findings support the notion that MND should be considered a multisystem disorder.
Rigid–Flexible Block Molecules Based on a Laterally Extended Aromatic Segment: Hierarchical Assembly into Single Fibers, Flat Ribbons, and Twisted Ribbons (2008)

Self-assembling rigid-flexible block molecules consisting of a laterally extended aromatic segment and different lengths of hydrophilic coils were synthesized and characterized. The block molecule based on a long poly(ethylene oxide) coil (1), in the melt state, shows an unidentified columnar structure, whereas the molecule with a shorter poly(ethylene oxide) coil (2) self-organizes into an oblique columnar structure. Further decrease in the poly(ethylene oxide) coil length as in the case of 3, on heating, induces a rectangular columnar structure in addition to an oblique columnar mesophase. In diethyl ether, 1 and 2 were observed to self-assemble into uniform nanofibers with bilayer packing. Remarkably, these elementary fibers were observed to further aggregate in a lateral way to form well-defined flat ribbons (1) and twisted ribbons (2) with solvent exchange of diethyl ether into methanol. Furthermore, the ribbons formed in methanol dissociated into elementary fibers in response to the addition of aromatic guest molecules. This transformation between ribbons and single fibers in response to the addition of guest molecules is attributed to the intercalation of aromatic substrates within the rigid segments and subsequent loosening of the aromatic stacking interactions. These results demonstrate that the introduction of a laterally extended aromatic segment into an amphiphilic molecular architecture can lead to the hierarchical formation from elementary fibers of nanoribbons with a tunable twist through controlled lateral interactions between aromatic segments.