Build log:
Mock Version: 5.5
Mock Version: 5.5
Mock Version: 5.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f39-build-49470419-5882436/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff7cda1a60>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '7077e9c08b3b467c9eee91a799f18c1b', '-D', '/var/lib/mock/f39-build-49470419-5882436/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1709510400
Wrote: /builddir/build/SRPMS/python-bioframe-0.6.2-2.fc39.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f39-build-49470419-5882436/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff7cda1a60>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b8b647e2aebd4f8d88b572b71ba2d0b6', '-D', '/var/lib/mock/f39-build-49470419-5882436/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1709510400
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.iYY70K
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bioframe-0.6.2
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bioframe-0.6.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bioframe-0.6.2
+ rm -rf /builddir/build/BUILD/bioframe-0.6.2-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/bioframe-0.6.2-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.I4wEth
+ umask 022
+ cd /builddir/build/BUILD
+ cd bioframe-0.6.2
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/bioframe-0.6.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-buildrequires
Handling hatchling from build-system.requires
Requirement not satisfied: hatchling
Handling hatch-vcs from build-system.requires
Requirement not satisfied: hatch-vcs
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-bioframe-0.6.2-2.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f39-build-49470419-5882436/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff7cda1a60>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8a16f3b5ced24baf80a772abe18aaa40', '-D', '/var/lib/mock/f39-build-49470419-5882436/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1709510400
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.4oZIM9
+ umask 022
+ cd /builddir/build/BUILD
+ cd bioframe-0.6.2
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/bioframe-0.6.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-buildrequires
Handling hatchling from build-system.requires
Requirement satisfied: hatchling
   (installed: hatchling 1.21.1)
Handling hatch-vcs from build-system.requires
Requirement satisfied: hatch-vcs
   (installed: hatch-vcs 0.4.0)
Handling matplotlib from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: matplotlib
Handling numpy>=1.10 from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: numpy>=1.10
Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: pandas>=1.3
Handling pyyaml from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: pyyaml
Handling requests from hook generated metadata: Requires-Dist (bioframe)
Requirement not satisfied: requests
Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: typing-extensions; python_version < '3.9'
Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: biopython; extra == 'dev'
Handling isort; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: isort; extra == 'dev'
Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pybbi; extra == 'dev'
Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pysam; extra == 'dev'
Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pytest; extra == 'dev'
Handling ruff; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: ruff; extra == 'dev'
Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: autodocsumm; extra == 'docs'
Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: jinja2; extra == 'docs'
Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: myst-nb; extra == 'docs'
Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx; extra == 'docs'
Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-autobuild; extra == 'docs'
Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs'
Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pytest; extra == 'test'
+ cat /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-buildrequires
+ rm -rfv bioframe-0.6.2.dist-info/
removed 'bioframe-0.6.2.dist-info/METADATA'
removed directory 'bioframe-0.6.2.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-bioframe-0.6.2-2.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f39-build-49470419-5882436/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff7cda1a60>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '1b36cd9e7930466e9230f9682bb48985', '-D', '/var/lib/mock/f39-build-49470419-5882436/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target noarch --nodeps /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1709510400
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.HALUGy
+ umask 022
+ cd /builddir/build/BUILD
+ cd bioframe-0.6.2
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/bioframe-0.6.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-buildrequires
Handling hatchling from build-system.requires
Requirement satisfied: hatchling
   (installed: hatchling 1.21.1)
Handling hatch-vcs from build-system.requires
Requirement satisfied: hatch-vcs
   (installed: hatch-vcs 0.4.0)
Handling matplotlib from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: matplotlib
   (installed: matplotlib 3.8.2)
Handling numpy>=1.10 from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: numpy>=1.10
   (installed: numpy 1.24.4)
Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pandas>=1.3
   (installed: pandas 1.5.3)
Handling pyyaml from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pyyaml
   (installed: pyyaml 6.0.1)
Handling requests from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: requests
   (installed: requests 2.28.2)
Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: typing-extensions; python_version < '3.9'
Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: biopython; extra == 'dev'
Handling isort; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: isort; extra == 'dev'
Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pybbi; extra == 'dev'
Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pysam; extra == 'dev'
Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pytest; extra == 'dev'
Handling ruff; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: ruff; extra == 'dev'
Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: autodocsumm; extra == 'docs'
Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: jinja2; extra == 'docs'
Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: myst-nb; extra == 'docs'
Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx; extra == 'docs'
Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-autobuild; extra == 'docs'
Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs'
Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pytest; extra == 'test'
+ cat /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-buildrequires
+ rm -rfv bioframe-0.6.2.dist-info/
removed 'bioframe-0.6.2.dist-info/METADATA'
removed directory 'bioframe-0.6.2.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/python-bioframe-0.6.2-2.fc39.buildreqs.nosrc.rpm
Child return code was: 11
Dynamic buildrequires detected
Going to install missing buildrequires. See root.log for details.
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-bioframe.spec'], chrootPath='/var/lib/mock/f39-build-49470419-5882436/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0xffff7cda1a60>timeout=201600uid=1000gid=425user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False)
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '27c558f62d444d5586be44727d868751', '-D', '/var/lib/mock/f39-build-49470419-5882436/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-bioframe.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1709510400
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Kumo3v
+ umask 022
+ cd /builddir/build/BUILD
+ cd bioframe-0.6.2
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/bioframe-0.6.2/pyproject-wheeldir --output /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-buildrequires
Handling hatchling from build-system.requires
Requirement satisfied: hatchling
   (installed: hatchling 1.21.1)
Handling hatch-vcs from build-system.requires
Requirement satisfied: hatch-vcs
   (installed: hatch-vcs 0.4.0)
Handling matplotlib from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: matplotlib
   (installed: matplotlib 3.8.2)
Handling numpy>=1.10 from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: numpy>=1.10
   (installed: numpy 1.24.4)
Handling pandas>=1.3 from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pandas>=1.3
   (installed: pandas 1.5.3)
Handling pyyaml from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: pyyaml
   (installed: pyyaml 6.0.1)
Handling requests from hook generated metadata: Requires-Dist (bioframe)
Requirement satisfied: requests
   (installed: requests 2.28.2)
Handling typing-extensions; python_version < '3.9' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: typing-extensions; python_version < '3.9'
Handling biopython; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: biopython; extra == 'dev'
Handling isort; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: isort; extra == 'dev'
Handling pybbi; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pybbi; extra == 'dev'
Handling pysam; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pysam; extra == 'dev'
Handling pytest; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pytest; extra == 'dev'
Handling ruff; extra == 'dev' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: ruff; extra == 'dev'
Handling autodocsumm; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: autodocsumm; extra == 'docs'
Handling jinja2; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: jinja2; extra == 'docs'
Handling myst-nb; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: myst-nb; extra == 'docs'
Handling sphinx; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx; extra == 'docs'
Handling sphinx-autobuild; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-autobuild; extra == 'docs'
Handling sphinx-rtd-theme; extra == 'docs' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: sphinx-rtd-theme; extra == 'docs'
Handling pytest; extra == 'test' from hook generated metadata: Requires-Dist (bioframe)
Ignoring alien requirement: pytest; extra == 'test'
+ cat /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-buildrequires
+ rm -rfv bioframe-0.6.2.dist-info/
removed 'bioframe-0.6.2.dist-info/METADATA'
removed directory 'bioframe-0.6.2.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.PNTlve
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bioframe-0.6.2
+ mkdir -p /builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ TMPDIR=/builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/bioframe-0.6.2/pyproject-wheeldir
Processing /builddir/build/BUILD/bioframe-0.6.2
  Preparing metadata (pyproject.toml): started
  Running command Preparing metadata (pyproject.toml)
  Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: bioframe
  Building wheel for bioframe (pyproject.toml): started
  Running command Building wheel for bioframe (pyproject.toml)
  Building wheel for bioframe (pyproject.toml): finished with status 'done'
  Created wheel for bioframe: filename=bioframe-0.6.2-py2.py3-none-any.whl size=143970 sha256=f9e32bbf71afeb2b09faba0cb9a6181793ff1f0a14bcd279e383f35ca0750d76
  Stored in directory: /builddir/.cache/pip/wheels/db/de/53/87ec11afefb1e3bd8d17e31475ba2afba2353516efa392b961
Successfully built bioframe
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5v9sku
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch
++ dirname /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bioframe-0.6.2
++ ls /builddir/build/BUILD/bioframe-0.6.2/pyproject-wheeldir/bioframe-0.6.2-py2.py3-none-any.whl
++ xargs basename --multiple
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
+ specifier=bioframe==0.6.2
+ '[' -z bioframe==0.6.2 ']'
+ TMPDIR=/builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/bioframe-0.6.2/pyproject-wheeldir bioframe==0.6.2
Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12)
Looking in links: /builddir/build/BUILD/bioframe-0.6.2/pyproject-wheeldir
Processing ./pyproject-wheeldir/bioframe-0.6.2-py2.py3-none-any.whl
Installing collected packages: bioframe
Successfully installed bioframe-0.6.2
+ '[' -d /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/bin ']'
+ rm -f /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages ']'
+ site_dirs+=("/usr/lib/python3.12/site-packages")
+ '[' /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib64/python3.12/site-packages ']'
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch$site_dir/*.dist-info
+ echo '%ghost /usr/lib/python3.12/site-packages/bioframe-0.6.2.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages/bioframe-0.6.2.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch --record /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages/bioframe-0.6.2.dist-info/RECORD --output /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-record
+ rm -fv /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages/bioframe-0.6.2.dist-info/RECORD
removed '/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages/bioframe-0.6.2.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages/bioframe-0.6.2.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages/bioframe-0.6.2.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_PERCENTAGES_COUNT=2
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-files --output-modules /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-record --prefix /usr -l bioframe
+ /usr/bin/find-debuginfo -j12 --strict-build-id -m -i --build-id-seed 0.6.2-2.fc39 --unique-debug-suffix -0.6.2-2.fc39.noarch --unique-debug-src-base python-bioframe-0.6.2-2.fc39.noarch --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bioframe-0.6.2
find-debuginfo: starting
Extracting debug info from 0 files
Creating .debug symlinks for symlinks to ELF files
find: ‘debug’: No such file or directory
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j12
Bytecompiling .py files below /builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.CgmXNx
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bioframe-0.6.2
+ '[' '!' -f /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-modules ']'
+ PATH=/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages
+ _PYTHONSITE=/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-bioframe-0.6.2-2.fc39.noarch-pyproject-modules
Check import: bioframe
Check import: bioframe.core
Check import: bioframe.core.arrops
Check import: bioframe.core.checks
Check import: bioframe.core.construction
Check import: bioframe.core.specs
Check import: bioframe.core.stringops
Check import: bioframe.extras
Check import: bioframe.io
Check import: bioframe.io.assembly
Check import: bioframe.io.fileops
Check import: bioframe.io.resources
Check import: bioframe.io.schemas
Check import: bioframe.ops
Check import: bioframe.sandbox
Check import: bioframe.sandbox.clients
Check import: bioframe.sandbox.gtf_io
Check import: bioframe.sandbox.parquet_io
Check import: bioframe.vis
+ k='not test_fetch'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ PATH=/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/bioframe-0.6.2/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=12
+ /usr/bin/pytest -v -k 'not test_fetch'
============================= test session starts ==============================
platform linux -- Python 3.12.2, pytest-7.3.2, pluggy-1.2.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/bioframe-0.6.2
collecting ... collected 59 items / 3 deselected / 56 selected
tests/test_assembly_info.py::test_assemblies_available PASSED            [  1%]
tests/test_assembly_info.py::test_assembly_info PASSED                   [  3%]
tests/test_core_checks.py::test_is_cataloged PASSED                      [  5%]
tests/test_core_checks.py::test_is_contained PASSED                      [  7%]
tests/test_core_checks.py::test_is_overlapping PASSED                    [  8%]
tests/test_core_checks.py::test_is_covering PASSED                       [ 10%]
tests/test_core_checks.py::test_is_tiling PASSED                         [ 12%]
tests/test_core_checks.py::test_is_bedframe PASSED                       [ 14%]
tests/test_core_checks.py::test_is_viewframe PASSED                      [ 16%]
tests/test_core_checks.py::test_is_sorted PASSED                         [ 17%]
tests/test_core_construction.py::test_add_ucsc_name_column PASSED        [ 19%]
tests/test_core_construction.py::test_any PASSED                         [ 21%]
tests/test_core_construction.py::test_sanitize_bedframe PASSED           [ 23%]
tests/test_core_construction.py::test_make_viewframe PASSED              [ 25%]
tests/test_core_specs.py::test_get_default_colnames PASSED               [ 26%]
tests/test_core_specs.py::test_update_default_colnames PASSED            [ 28%]
tests/test_core_specs.py::test_verify_columns PASSED                     [ 30%]
tests/test_core_specs.py::test_verify_column_dtypes PASSED               [ 32%]
tests/test_core_specs.py::test_is_chrom_dtype PASSED                     [ 33%]
tests/test_core_stringops.py::test_to_ucsc_string PASSED                 [ 35%]
tests/test_core_stringops.py::test_parse_region PASSED                   [ 37%]
tests/test_core_stringops.py::test_parse_region_string PASSED            [ 39%]
tests/test_core_stringops.py::test_is_complete_ucsc_string PASSED        [ 41%]
tests/test_extras.py::test_make_chromarms FAILED                         [ 42%]
tests/test_extras.py::test_binnify PASSED                                [ 44%]
tests/test_extras.py::test_digest SKIPPED (could not import 'Bio': N...) [ 46%]
tests/test_extras.py::test_frac_mapped SKIPPED (could not import 'py...) [ 48%]
tests/test_extras.py::test_frac_gc SKIPPED (could not import 'pysam'...) [ 50%]
tests/test_extras.py::test_seq_gc PASSED                                 [ 51%]
tests/test_extras.py::test_pair_by_distance PASSED                       [ 53%]
tests/test_fileops.py::test_read_table PASSED                            [ 55%]
tests/test_fileops.py::test_read_chromsizes PASSED                       [ 57%]
tests/test_ops.py::test_trim PASSED                                      [ 58%]
tests/test_ops.py::test_expand PASSED                                    [ 60%]
tests/test_ops.py::test_expand_amount_args PASSED                        [ 62%]
tests/test_ops.py::test_overlap PASSED                                   [ 64%]
tests/test_ops.py::test_overlap_preserves_coord_dtypes PASSED            [ 66%]
tests/test_ops.py::test_overlap_ensure_int PASSED                        [ 67%]
tests/test_ops.py::test_cluster PASSED                                   [ 69%]
tests/test_ops.py::test_merge PASSED                                     [ 71%]
tests/test_ops.py::test_complement PASSED                                [ 73%]
tests/test_ops.py::test_closest PASSED                                   [ 75%]
tests/test_ops.py::test_coverage PASSED                                  [ 76%]
tests/test_ops.py::test_subtract PASSED                                  [ 78%]
tests/test_ops.py::test_setdiff PASSED                                   [ 80%]
tests/test_ops.py::test_count_overlaps PASSED                            [ 82%]
tests/test_ops.py::test_assign_view PASSED                               [ 83%]
tests/test_ops.py::test_sort_bedframe PASSED                             [ 85%]
tests/test_ops_select.py::test_select PASSED                             [ 87%]
tests/test_ops_select.py::test_select__with_colnames PASSED              [ 89%]
tests/test_ops_select.py::test_select__with_nulls PASSED                 [ 91%]
tests/test_ops_select.py::test_select__mask_indices_labels PASSED        [ 92%]
tests/test_ops_select.py::test_select__query_intervals_are_half_open PASSED [ 94%]
tests/test_ops_select.py::test_select__with_point_intervals PASSED       [ 96%]
tests/test_ops_select.py::test_select__with_points PASSED                [ 98%]
tests/test_vis.py::test_to_ucsc_colorstring PASSED                       [100%]
=================================== FAILURES ===================================
_____________________________ test_make_chromarms ______________________________
    def test_make_chromarms():
    
        ### test the case where columns have different names
        df = pd.DataFrame(
            [["chrX", 0, 8]],
            columns=["chromosome", "lo", "hi"],
        )
        mids = pd.DataFrame([["chrX", 4]], columns=["chromosome", "loc"])
        arms = pd.DataFrame(
            [
                ["chrX", 0, 4, "chrX_p"],
                ["chrX", 4, 8, "chrX_q"],
            ],
            columns=["chrom", "start", "end", "name"],
        )
        arms = arms.astype({"start": pd.Int64Dtype(), "end": pd.Int64Dtype()})
    
        # test passing 3 columns
>       result = bioframe.make_chromarms(
            df,
            mids,
            cols_chroms=["chromosome", "lo", "hi"],
            cols_mids=["chromosome", "loc"],
        )
tests/test_extras.py:30: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
chromsizes =   chromosome  lo  hi
0       chrX   0   8
midpoints =   chromosome  loc
0       chrX    4
cols_chroms = ['chromosome', 'lo', 'hi'], cols_mids = ['chromosome', 'loc']
suffixes = ('_p', '_q')
    def make_chromarms(
        chromsizes,
        midpoints,
        cols_chroms=("chrom", "length"),
        cols_mids=("chrom", "mid"),
        suffixes=("_p", "_q"),
    ):
        """
        Split chromosomes into chromosome arms.
    
        Parameters
        ----------
        chromsizes : pandas.Dataframe or dict-like
            If dict or pandas.Series, a map from chromosomes to lengths in bp.
            If pandas.Dataframe, a dataframe with columns defined by cols_chroms.
            If cols_chroms is a triplet (e.g. 'chrom','start','end'), then
            values in chromsizes[cols_chroms[1]].values must all be zero.
    
        midpoints : pandas.Dataframe or dict-like
            Mapping of chromosomes to midpoint (aka centromere) locations.
            If dict or pandas.Series, a map from chromosomes to midpoints in bp.
            If pandas.Dataframe, a dataframe with columns defined by cols_mids.
    
        cols_chroms : (str, str) or (str, str, str)
            Two columns
    
        suffixes : tuple, optional
            Suffixes to name chromosome arms. Defaults to p and q.
    
        Returns
        -------
        df_chromarms
            4-column BED-like DataFrame (chrom, start, end, name).
            Arm names are chromosome names + suffix.
            Any chromosome not included in ``mids`` will be not be split.
    
        """
        columns_to_drop = ["index", "sub_index_"]
        if len(cols_chroms) == 2:
            ck1, sk1 = cols_chroms
        elif len(cols_chroms) == 3:
            ck1, sk1, ek1 = cols_chroms
    
        if isinstance(chromsizes, (pd.Series, dict)):
            chromsizes = dict(chromsizes)
            df_chroms = (
                pd.DataFrame({
                    ck1: list(chromsizes.keys()),
                    "length": list(chromsizes.values()),
                })
            )
        elif isinstance(chromsizes, pd.DataFrame):
            df_chroms = chromsizes.copy()
        else:
            raise ValueError("unknown input type for chromsizes")
    
        if len(cols_chroms) == 2:
            _verify_columns(df_chroms, [ck1, sk1])
            columns_to_drop += [sk1]
            df_chroms["end"] = df_chroms[sk1].values
            df_chroms["start"] = 0
            sk1, ek1 = "start", "end"
        elif len(cols_chroms) == 3:
            ck1, sk1, ek1 = cols_chroms
            _verify_columns(df_chroms, [ck1, sk1, ek1], unique_cols=True)
            if any(df_chroms[sk1].values != 0):
                raise ValueError("all values in starts column must be zero")
        else:
            raise ValueError("invalid number of cols_chroms")
    
        ck2, sk2 = cols_mids
        if isinstance(midpoints, (pd.Series, dict)):
            midpoints = dict(midpoints)
            df_mids = pd.DataFrame.from_dict(midpoints, orient="index", columns=[sk2])
            df_mids.reset_index(inplace=True)
            df_mids.rename(columns={"index": ck2}, inplace=True)
        elif isinstance(midpoints, pd.DataFrame):
            df_mids = midpoints.copy()
        else:
            raise ValueError("unknown input type for midpoints")
        _verify_columns(df_mids, [ck2, sk2])
        df_mids["start"] = df_mids[sk2]
        df_mids["end"] = df_mids[sk2]
    
        df_chromarms = ops.subtract(
            df_chroms,
            df_mids,
            cols1=(ck1, sk1, ek1),
            cols2=(ck2, "start", "end"),
            return_index=True,
        )
        if df_chromarms["sub_index_"].max() > 1:
            raise ValueError(
                "chromosome split into more than two arms, double-check midpoints"
            )
        df_chromarms["name"] = df_chromarms[ck1] + [
>           suffixes[i] for i in df_chromarms["sub_index_"].values
        ]
E       TypeError: tuple indices must be integers or slices, not numpy.float64
../../BUILDROOT/python-bioframe-0.6.2-2.fc39.noarch/usr/lib/python3.12/site-packages/bioframe/extras.py:115: TypeError
=============================== warnings summary ===============================
../../../../usr/lib/python3.12/site-packages/pkg_resources/__init__.py:121
  /usr/lib/python3.12/site-packages/pkg_resources/__init__.py:121: DeprecationWarning: pkg_resources is deprecated as an API
    warnings.warn("pkg_resources is deprecated as an API", DeprecationWarning)
tests/test_ops.py::test_overlap
  /builddir/build/BUILD/bioframe-0.6.2/tests/test_ops.py:450: DeprecationWarning: Bitwise inversion '~' on bool is deprecated. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int.
    assert ~df1.equals(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED tests/test_extras.py::test_make_chromarms - TypeError: tuple indices m...
====== 1 failed, 52 passed, 3 skipped, 3 deselected, 2 warnings in 4.55s =======
RPM build errors:
error: Bad exit status from /var/tmp/rpm-tmp.CgmXNx (%check)
    Bad exit status from /var/tmp/rpm-tmp.CgmXNx (%check)
Child return code was: 1
EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M 27c558f62d444d5586be44727d868751 -D /var/lib/mock/f39-build-49470419-5882436/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin \'--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"\' \'--setenv=PS1=<mock-chroot> \\s-\\v\\$ \' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c \'/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-bioframe.spec\'\n', 1)]
Traceback (most recent call last):
  File "/usr/lib/python3.12/site-packages/mockbuild/trace_decorator.py", line 93, in trace
    result = func(*args, **kw)
             ^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/site-packages/mockbuild/util.py", line 612, in do_with_status
    raise exception.Error("Command failed: \n # %s\n%s" % (cmd_pretty(command, env), output), child.returncode)
mockbuild.exception.Error: Command failed: 
 # /usr/bin/systemd-nspawn -q -M 27c558f62d444d5586be44727d868751 -D /var/lib/mock/f39-build-49470419-5882436/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007"' '--setenv=PS1=<mock-chroot> \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-bioframe.spec'



Extracted relevant lines:
-Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
tests/test_ops_select.py::test_select__with_points PASSED                [ 98%]
tests/test_vis.py::test_to_ucsc_colorstring PASSED                       [100%]
=================================== FAILURES ===================================
_____________________________ test_make_chromarms ______________________________
    def test_make_chromarms():
    
        ### test the case where columns have different names
        df = pd.DataFrame(
            [["chrX", 0, 8]],
            columns=["chromosome", "lo", "hi"],
        )
        mids = pd.DataFrame([["chrX", 4]], columns=["chromosome", "loc"])
        arms = pd.DataFrame(
            [
                ["chrX", 0, 4, "chrX_p"],
                ["chrX", 4, 8, "chrX_q"],
            ],
            columns=["chrom", "start", "end", "name"],
        )
        arms = arms.astype({"start": pd.Int64Dtype(), "end": pd.Int64Dtype()})
    
        # test passing 3 columns
>       result = bioframe.make_chromarms(
            df,
            mids,
            cols_chroms=["chromosome", "lo", "hi"],
            cols_mids=["chromosome", "loc"],
        )
tests/test_extras.py:30: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
chromsizes =   chromosome  lo  hi
0       chrX   0   8
midpoints =   chromosome  loc
0       chrX    4
cols_chroms = ['chromosome', 'lo', 'hi'], cols_mids = ['chromosome', 'loc']
suffixes = ('_p', '_q')
    def make_chromarms(
        chromsizes,
        midpoints,
        cols_chroms=("chrom", "length"),
        cols_mids=("chrom", "mid"),
        suffixes=("_p", "_q"),
    ):
        """
        Split chromosomes into chromosome arms.
    
        Parameters
        ----------
        chromsizes : pandas.Dataframe or dict-like
            If dict or pandas.Series, a map from chromosomes to lengths in bp.
            If pandas.Dataframe, a dataframe with columns defined by cols_chroms.
            values in chromsizes[cols_chroms[1]].values must all be zero.
    
        midpoints : pandas.Dataframe or dict-like
            Mapping of chromosomes to midpoint (aka centromere) locations.
            If dict or pandas.Series, a map from chromosomes to midpoints in bp.
            If pandas.Dataframe, a dataframe with columns defined by cols_mids.
    
        cols_chroms : (str, str) or (str, str, str)
            Two columns
    
        suffixes : tuple, optional
            Suffixes to name chromosome arms. Defaults to p and q.
    
        Returns
        -------
        df_chromarms
            4-column BED-like DataFrame (chrom, start, end, name).
            Arm names are chromosome names + suffix.
            Any chromosome not included in ``mids`` will be not be split.
    
        """
        columns_to_drop = ["index", "sub_index_"]
    
        if isinstance(chromsizes, (pd.Series, dict)):
            chromsizes = dict(chromsizes)
            df_chroms = (
                pd.DataFrame({
                    "length": list(chromsizes.values()),
                })
            )
        elif isinstance(chromsizes, pd.DataFrame):
            df_chroms = chromsizes.copy()
        else:
            raise ValueError("unknown input type for chromsizes")
    
            df_chroms["end"] = df_chroms[sk1].values
            _verify_columns(df_chroms, [ck1, sk1, ek1], unique_cols=True)
            if any(df_chroms[sk1].values != 0):
                raise ValueError("all values in starts column must be zero")
        else:
            raise ValueError("invalid number of cols_chroms")
    
        ck2, sk2 = cols_mids
        if isinstance(midpoints, (pd.Series, dict)):
            midpoints = dict(midpoints)
            df_mids = pd.DataFrame.from_dict(midpoints, orient="index", columns=[sk2])
            df_mids.reset_index(inplace=True)
            df_mids.rename(columns={"index": ck2}, inplace=True)
        elif isinstance(midpoints, pd.DataFrame):
            df_mids = midpoints.copy()
        else:
            raise ValueError("unknown input type for midpoints")
    
        df_chromarms = ops.subtract(
            df_chroms,
            df_mids,
            cols1=(ck1, sk1, ek1),
            return_index=True,
        )
            raise ValueError(
                "chromosome split into more than two arms, double-check midpoints"
            )
>           suffixes[i] for i in df_chromarms["sub_index_"].values
        ]
E       TypeError: tuple indices must be integers or slices, not numpy.float64
../../../../usr/lib/python3.12/site-packages/pkg_resources/__init__.py:121
    warnings.warn("pkg_resources is deprecated as an API", DeprecationWarning)
tests/test_ops.py::test_overlap
  /builddir/build/BUILD/bioframe-0.6.2/tests/test_ops.py:450: DeprecationWarning: Bitwise inversion '~' on bool is deprecated. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int.
    assert ~df1.equals(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED tests/test_extras.py::test_make_chromarms - TypeError: tuple indices m...
EXCEPTION: [Error('Command failed: 
 # /usr/bin/systemd-nspawn -q -M 27c558f62d444d5586be44727d868751 -D /var/lib/mock/f39-build-49470419-5882436/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin \'--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"\' \'--setenv=PS1=<mock-chroot> \\s-\\v\\$ \' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c \'/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-bioframe.spec\'
', 1)]
Traceback (most recent call last):
             ^^^^^^^^^^^^^^^^^
    raise exception.Error("Command failed: 
 # %s
%s" % (cmd_pretty(command, env), output), child.returncode)
mockbuild.exception.Error: Command failed: 
 # /usr/bin/systemd-nspawn -q -M 27c558f62d444d5586be44727d868751 -D /var/lib/mock/f39-build-49470419-5882436/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.ejv88r34:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;<mock-chroot>\007"' '--setenv=PS1=<mock-chroot> \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --noclean --target noarch /builddir/build/SPECS/python-bioframe.spec'