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jpodivin commited on
Commit
01880af
1 Parent(s): 8608511

Adding fields to dataset

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Signed-off-by: Jiri Podivin <jpodivin@gmail.com>

Files changed (1) hide show
  1. plantorgans.py +25 -22
plantorgans.py CHANGED
@@ -11,13 +11,6 @@ _CITATION = """"""
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  _LICENSE = "MIT"
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- _NAMES = [
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- 'Leaf',
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- 'Stem',
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- 'Flower',
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- 'Fruit',
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- ]
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-
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  _BASE_URL = "https://huggingface.co/datasets/jpodivin/plantorgans/resolve/main/"
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  _TRAIN_URLS = [_BASE_URL + f"sourcedata_labeled.tar.{i:02}" for i in range(0, 8)]
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  _TEST_URLS = [_BASE_URL + f"sourcedata_labeled.tar.{i:02}" for i in range(8, 12)]
@@ -60,18 +53,20 @@ class PlantOrgans(datasets.GeneratorBasedBuilder):
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  def _info(self):
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  return datasets.DatasetInfo(
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- description=_DESCRIPTION,
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- features=datasets.Features(
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- {
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- "image": datasets.Image(),
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- "mask": datasets.Image(),
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- }
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- ),
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- supervised_keys=("image", "annotation"),
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- homepage=_HOMEPAGE,
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- citation=_CITATION,
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- license=_LICENSE,
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- )
 
 
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  def _split_generators(self, dl_manager):
@@ -118,6 +113,7 @@ class PlantOrgans(datasets.GeneratorBasedBuilder):
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  """
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  images: path to image directory
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  metadata_path: path to metadata csv
 
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  """
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  # Get local image paths
@@ -137,6 +133,13 @@ class PlantOrgans(datasets.GeneratorBasedBuilder):
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  # Make examples and yield
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  for i, r in metadata.iterrows():
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-
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- # Each example must contain path to image and list of annotations under object key
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- yield i, {'mask': r['mask_path'], 'image': r['image_path']}
 
 
 
 
 
 
 
 
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  _LICENSE = "MIT"
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  _BASE_URL = "https://huggingface.co/datasets/jpodivin/plantorgans/resolve/main/"
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  _TRAIN_URLS = [_BASE_URL + f"sourcedata_labeled.tar.{i:02}" for i in range(0, 8)]
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  _TEST_URLS = [_BASE_URL + f"sourcedata_labeled.tar.{i:02}" for i in range(8, 12)]
 
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  def _info(self):
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  return datasets.DatasetInfo(
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+ description=_DESCRIPTION,
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+ features=datasets.Features(
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+ {
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+ "image": datasets.Image(),
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+ "mask": datasets.Image(),
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+ "score": datasets.Value(dtype='double'),
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+ "image_name": datasets.Value(dtype="string")
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+ }
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+ ),
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+ supervised_keys=("image", "mask"),
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+ homepage=_HOMEPAGE,
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+ citation=_CITATION,
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+ license=_LICENSE,
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+ )
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  def _split_generators(self, dl_manager):
 
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  """
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  images: path to image directory
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  metadata_path: path to metadata csv
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+ masks_path: path to masks
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  """
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  # Get local image paths
 
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  # Make examples and yield
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  for i, r in metadata.iterrows():
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+ # Example contains paths to mask, source image, certainty of label,
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+ # and name of source image.
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+ example = {
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+ 'mask': r['mask_path'],
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+ 'image': r['image_path'],
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+ 'image_name': Path(r['image_path']).parts[-1],
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+ 'score': r['score']
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+ }
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+
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+ yield i, example