fairdataihub/envision-eye-imaging-training-data huggingface dataset:
Synthetic Nodules for Evaluation of 3D Deep Learning Segmentation Attribution Both the algorithm used to generate this dataset as well as the comprehensive evaluation metric for visual explanations are detailed in the paper "Attribution of 3D Deep Learning Segmentation in Medical Imaging". This is a synthetic dataset developed to enable the comprehensive evaluation of visual explanation methods applied to deep learning segmentation predictions. The data provided here include 100 training and
Fully annotated Human Breast carcinoma cells for 3D segmentation training Fully annotated dataset for training of 3D segmentation models. We provide the Raw image patches in the Raw directory and instance segmentation labels in the RealMask directory, the semantic segmentation masks are provided in the BinaryMask directory. Manually curated from originally published dataset over here: http://celltrackingchallenge.net/3d-datasets/ by team at Kapoorlabs. VollSeg, StarDist, UNET, Segmentation,
Supplementary Material for Nested Segmentation of Web Search Queries 1. Query test of SGCL12 [SGCL12QueryTestSet.txt] 2. Outputs of 16 nesting algorithms on the query test set of SGCL12 [Input flat segmention: Saha Roy et al., SIGIR 2012] [Nested Segmentation Outputs SGCL12.zip] 3. Query set of TREC-WT [TREC-WTQueryTestSet.txt] 4. Outputs of 16 nesting algorithms on the query test set of TREC-WT [Input flat segmention: Saha Roy et al., SIGIR 2012] [Nested Segmentation Outputs
Larval salamander retinal population data in response to natural movies from the Chicago Motion Database Everything that the brain sees must first be encoded by the retina, which maintains a reliable representation of the visual world in many different, complex natural scenes while also adapting to stimulus changes. This study quantifies whether and how the brain selectively encodes stimulus features about scene identity in complex naturalistic environments. While a wealth of previous work
Ophthalmic formulation of methotrexate: a strategy of using the self-assembled LacAC4A nanoparticles for non-invasive drug delivery to the ocular posterior segment Drug delivery to ocular posterior segment remains difficult due to the challenges imposed by dynamic and static ocular barriers, lesion point targeting, and off-target effect. In this study, a novel approach is demonstrated for non-invasive drug delivery to the ocular posterior segments using lactose-modified azocalix[4] arene
Annual Crop & Land Cover Land Use (CLCLU) Dataset for the Middle Rio Grande (MRG) Region (1994–2024) This dataset presents the first long-term, scalable, and data-driven Crop and Land Cover Land Use (CLCLU) classification product for both the U.S. and Mexican sides of the Middle Rio Grande (MRG) region. Covering the years 1994 to 2024 , it was developed using multi-temporal optical satellite imagery, with crop-specific annotations and expert-informed land use categories to support
Figure 4 - Premade Intermediate Files These are premade intermediate files used in the Giotto Suite Manuscript Figure 4 scripts Contents: segmentation_polygons.json - {baysor 0.5.2} segmentation GeometryCollection cellpose.tiff - {cellpose 3.1.0} segmentation mask stardist.tiff - {stardist 0.9.1} segmentation mask mesmer.tiff - {deepcell 0.12.10}, {deepcell-toolbox 0.12.1}, {deepcell-tracking 0.6.5} segmentation mask zoomext.csv - extent information for a zoomed in
3D Microvascular Image Data and Labels for Machine Learning These images and associated binary labels were collected from collaborators across multiple universities to serve as a diverse representation of biomedical images of vessel structures, for use in the training and validation of machine learning tools for vessel segmentation. The dataset contains images from a variety of imaging modalities, at different resolutions, using difference sources of contrast and featuring different organs/
Towards Sustainable Urban Transport Planning in Cities with Complex Topography: A Case Study of Constantine, Algeria Using Spatial Data Analytics and Predictive Modelling This dataset supports the study “Towards Sustainable Urban Transport Planning in Cities with Complex Topography: A Case Study of Constantine, Algeria Using Spatial Data Analytics and Predictive Modelling”. It includes processed OD flow data, mean slope measurements, classified slope maps, and Python scripts used for
Business Insights and Conditions Survey: Waves 1-111, 2020-2024: Secure Access

The Business Insights and Conditions Survey (BICS, formerly
SuperDARN data in netCDF format (1997-Oct) 1997-Oct SuperDARN radar data in netCDF format. These files were produced using version 3.0 of the public FitACF algorithm, using the AACGM v2 coordinate system. Cite this dataset if using our data in a publication. The RST is available here: https://github.com/SuperDARN/rst The research enabled by SuperDARN is due to the efforts of teams of scientists and engineers working in many countries to build and operate radars, process data and provide
Biogeography of bird and mammal trophic structures Does climate determine the trophic organization of communities around the world? A recent study showed that a limited number of community trophic structures emerge when co-occurrence of trophic guilds among large mammals is examined globally. We ask whether the pattern is general across a all terrestrial mammals (n=5272) and birds (n=9993). We found that the six community-trophic structures previously identified with large mammals are
bioimage.io upload: ilastik/tnbc View on bioimage.io # Segmentation of Nuclei in Histopathology Images Nucleus Segmentation Training Data Traning data for instance segmentation of nuclei in H&E brightfield images. This dataset was published in https://doi.org/10.1109/TMI.2018.2865709. backup.bioimage.io bioimage.io bioimage.io:dataset nuclei instance-segmentation brightfield-microscopy 2D
SuperDARN data in netCDF format (2019-Oct) 2019-Oct SuperDARN radar data in netCDF format. These files were produced using versions 2.5 and 3.0 of the public FitACF algorithm, using the AACGM v2 coordinate system. Cite this dataset if using our data in a publication. The RST is available here: https://github.com/SuperDARN/rst The research enabled by SuperDARN is due to the efforts of teams of scientists and engineers working in many countries to build and operate radars, process data and
SuperDARN data in netCDF format (1994-Oct) 1994-Oct SuperDARN radar data in netCDF format. These files were produced using version 3.0 of the public FitACF algorithm, using the AACGM v2 coordinate system. Cite this dataset if using our data in a publication. The RST is available here: https://github.com/SuperDARN/rst The research enabled by SuperDARN is due to the efforts of teams of scientists and engineers working in many countries to build and operate radars, process data and provide
bioimage.io upload: ilastik/platynereis_em_training_data View on bioimage.io # Platynereis EM Traning Data Platynereis EM Segmentation Training Data Training data for segmentation of cellular membranes, nuclei, cuticle and cilia in Platynereis dumerilii. The training data is extracted from a whole body EM volume of a Platynereis larva that was used to train networks for segmentation in Whole-body integration of gene expression and single-cell morphology . For each organelle several
Data from: Predicted tracking error triggers catch-up saccades during smooth pursuit For foveated animals, visual tracking of moving stimuli requires the synergy between saccades and smooth pursuit eye movements. Deciding to trigger a catch-up saccade during pursuit influences the quality of visual input. This decision is a trade-off between tolerating sustained position error when no saccade is triggered or a transient loss of vision during the saccade due to saccadic suppression. Although
Polarization Non-Reciprocity and Recursive Torsion Dynamics: Unified Foundations of UCH-HSTR, UCH-FRSM, and The Big Spin Theory Title: Polarization Non-Reciprocity and Recursive Torsion Dynamics: Unified Foundations of UCH-HSTR, UCH-FRSM, and The Big Spin Theory I. Introduction The Universal Controlled Harmonics – Hyperbolic String Theory Redox (UCH-HSTR) framework is a groundbreaking theoretical paradigm that seeks to unify the domains of general relativity, quantum field theory, and
Antiphospholipid syndrome and neurofibromatosis type I: a coincidence or new association? ABSTRACT | Numerous studies have reported on structural vascular anomalies and ischemia associated with neurofibromatosis type 1 that are thought to stem from dysfunction of neurofibromin, the neurofibromatosis type 1 protein. Documented cases of associated antiphospholipid syndrome fulfilling the accepted diagnostic criteria are exceptionally rare, with only three cases reported in the literature. Here,
AMPERE Summary Plot Movies (2020-Oct) 2020-Oct AMPERE summary plot movies. See included zenodo_summary_plot_movie_description document for details. AMPERE ionosphere magnetosphere convection rst electrodynamics
Nonlinear Height-DBH model analysis for three tropical tree species in Mt. Makiling, Philippines The study was conducted to develop the H-DBH models of three species in Mt. Makiling. Six H-DBH models (CR, EX, KF, ML, SC, and WE) were used to derive and estimate the height of three species in Mt. Makilingsix H-DBH models (CR, EX, KF, ML, SC, and WE) were used to derive and estimate the height of three species. Based on the evaluation criteria including R2, RMSE, Ē, AMD, AIC, and AICw, the
data from RNA2seg benchmark # Segmentation_shape_vhfi The folder segmentation_shape_vhfi contains the segmentation shapes used in the RNA2seg paper with the dataset from https://vizgen.com/data-release-program/ at MERSCOPE FFPE Human Immuno-Oncology Data Release -- Cellbound1, Cellbound3 and DAPI are the segmentations done by cellpose of the corresponding staining -- VHFI is the cell segmentation provided by vizgen -- annotation is the annotation done for RNA2seg paper --RNA2seg is
Code and Source Data for "Knowledge-Guided Machine Learning can improve C cycle quantification in agroecosystems" Datasets for code and Source Data for the study "Knowledge-Guided Machine Learning can improve C cycle quantification in agroecosystems" https://doi.org/10.1038/s41467-023-43860-5. All files belong to Licheng Liu and Zhenong Jin at University of Minnesota. deposit_code_v2.zip contains packaged codes and sample runs for KGML-ag-Carbon training, validation and implementations. Source
MicrobeAnnotator KEGG Database (UNOFFICIAL MIRROR) Contains the following files: total 128K -rw-r--r-- 1 jespinoz staff 5.8K Oct 18 16:39 KEGG_Bifurcating_Module_Information.pkl -rw-r--r-- 1 jespinoz staff 96 Oct 18 16:41 KEGG_Bifurcating_Module_Information.pkl.md5 -rw-r--r-- 1 jespinoz staff 37K Oct 18 16:39 KEGG_Module_Information.txt -rw-r--r-- 1 jespinoz staff 84 Oct 18 16:41 KEGG_Module_Information.txt.md5 -rw-r--r-- 1 jespinoz staff 59K Oct 18 16:39
Data to "Harnessing model ensembles to assess uncertainty and prospective characterization factors for AWARE2.0" This repository contains the datasets corresponding to "Harnessing model ensembles to assess uncertainty and prospective characterization factors for AWARE2.0", submitted to the International Journal of Life Cycle Assessment. Until publication of the article and the corresponding update of the readme files, all data provided here must be considered as preliminary. The files are
East Asian Prehistoric Human-Face Jade Form 20 (EANJ_FACE_20): High-Resolution Digital Documentation of Morphology, Perforations, Surface Evolution, and Tool Traces 1. Core Statement 1.1 This record contains high-resolution raw visual data of a single human-face–form jade object (Form ID: EANJ_FACE_20). 1.2 This dataset serves as a foundational research layer within an ongoing digital archiving project, providing high-fidelity visual evidence to support morphological analysis, traceology, and
Data from: Htr1b is necessary for normal retinal function in mice Introduction: Serotonin (5-HT) is a neurotransmitter that is involved in retinal development, physiology, and vision, yet the specific contribution of individual 5-HT receptors to retinal function is poorly characterized. We identified 5-HT receptor 1B (Htr1b) as a potential key regulator of serotonergic signaling in the retina. Methods: Htr1b localization was examined using RNAseq and in situ labeling. Retinal
AMPERE GRD & IRD Data (2019-Oct) 2019-Oct AMPERE GRD and IRD data. AMPERE IRD files contain hemispheric delta-B observations in global coordinates (geographic and AACGM). Data are blocked into 10-minute 'chunks' at 2-minute resolution for use in the fitting algorithm. Measurements flagged 'bad' in the earlier processing are removed prior to entry in IRD. AMPERE GRD files contain hemispheric delta-B and Birkeland current fits at 2-minute resolution. AMPERE ionosphere magnetosphere convection
CIL:41670, Philodina roseola, muscle cell, egg, oocyte. In Cell Image Library This is a live image of the bdelloid rotifer Philodina roseola. Bdelloid rotifers are microscopic freshwater invertebrates best known for their capacity to undergo frequent cycles of desiccation and rehydration, their long-term asexuality, which is manifested in the absence of males and meiosis, and the ability to capture foreign genetic material at levels unprecedented in metazoans. This image of an adult female
A Survey of Diagnostic and Management Practices in Retinal Vasculitis: International Uveitis Study Group (IUSG) Retinal Vasculitis Study (ReViSe)—Report 5 Retinal vasculitis (RV) is a complex inflammatory disorder of retinal blood vessels with variability in diagnosis, classification, and management. Despite efforts to standardize definitions, discrepancies persist regarding clinical features, systemic associations, and treatment approaches. This study aimed to assess clinical practices among
AMPERE Summary Plot Movies (2022-Oct) 2022-Oct AMPERE summary plot movies. See included zenodo_summary_plot_movie_description document for details. AMPERE ionosphere magnetosphere convection rst electrodynamics
Keratoconus Ukraine children ОХМАТДИТ The aim of this study is to assess the prevalence of keratoconus among children in Ukraine through a two-year study conducted at the National Children's Specialized Hospital "Ohmatdyt". The study also seeks to evaluate the demographic distribution and corneal parameter changes associated with keratoconus, and to identify any significant epidemiological patterns within the pediatric population. The purpose of this study is to evaluate the prevalence and
Supplementary Material for: Idiopathic multifocal choroiditis and punctate inner choroidopathy: evaluation of risk factors for increased relapse rate. A 2-year prospective observational cohort study Introduction The aim of this study is to describe the course of disease in patients with idiopathic multifocal choroiditis (MFC) and punctate inner choroidopathy (PIC) and to identify risk factors associated with an increased relapse rate of disease activity. Methods In this prospective
Doodleverse/Segmentation Zoo/Seg2Map Res-UNet models for OpenEarthMap/9-class segmentation of RGB 512x512 high-res. images Doodleverse/Segmentation Zoo/Seg2Map Res-UNet models for OpenEarthMap/9-class segmentation of RGB 512x512 high-res. images These Residual-UNet model data are based on the [OpenEarthMap dataset](https://open-earth-map.org/) Models have been created using Segmentation Gym* using the following dataset**: https://zenodo.org/record/7223446#.Y9gtWHbMIuV Image size
Electromagnetic Calorimeter Shower Images Each HDF5 file has the following structure: energy Dataset {100000, 1} layer_0 Dataset {100000, 3, 96} layer_1 Dataset {100000, 12, 12} layer_2 Dataset {100000, 12, 6} overflow Dataset {100000, 3} In practice, each file is a collection of 100,000 calorimeter showers corresponding to the particle specified in the file name (eplus = positrons, gamma = photons, piplus = charged pions). The calorimeter we built is segmented
Data from: Decoupled diversity and disparity after faunistic turnover in caviomorph rodents Caviomorph rodents diversified widely in the Americas. Within this group, the sister clades Octodontoidea (spiny rats and allies) and Chinchilloidea (chinchillas and allies) illustrate strikingly imbalanced evolution, with 195 extant species in the former and only six in the latter. Fossil evidence, however, documents greater past diversity and disparity in Chinchilloidea, including the largest
CIL:11180, Rattus, epithelial cell. In Cell Image Library Electron micrograph of the junctional complex of intestinal epithelial cells of the rat shows the apical-most zonula occludens (tight junction), the zonula adherens (medium junction) and the macula adherens (desmosome). Image published in Faquhar and Palade, J. Cell Biol. 17: 375-412, 1963 and reprinted with permission as Figure 61 from Chapter 3 (Junctional Specializations) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. A PDF copy of the
Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for segmentation of xBD/damaged buildings in RGB 768x768 high-res. images Doodleverse/Segmentation Zoo/Seg2Map SegFormer models for segmentation of xBD/damaged buildings in RGB 768x768 high-res. images Models have been created using Segmentation Gym* using the following dataset**: https://arxiv.org/abs/1911.09296 These SegFormer model data are based on 1m spatial footprint images and associated labels of undamaged/damaged
CeraMIRScan: Mid-infrared OCT Scan Dataset for Ceramic Quality Assessment Mid-infrared Optical Coherence Tomography (MIR-OCT) is a promising Non-Destructive Testing (NDT) technique due to its high-resolution imaging capabilities and extensive applicability across various industrial domains. The CeraMIRScan dataset comprises 29 volumes corresponding to MIR-OCT scans of 3D printed ceramic pieces and has been carefully curated to support the development of Deep Learning models for defect
Multi-Atlas Labeling Challenge (MALC) dataset Three challenging medical applications: whole-brain, whole-body and retinal layer segmentation. MRI T1 brain scans Medical Imaging Segmentation
Pretrained models and test examples of live cell anatomy segmentation Pretrained models of live cell anatomy segmentation and test examples of the segmentation of 15 structures cell segmentation, organelle
Ophthalmic, Neurological, Radiological, and Visual Rehabilitation Profile and Outcomes in a Cohort of Patients with Joubert Syndrome To report the ophthalmic, neurological, and radiological profile in a cohort of patients suspected with Joubert syndrome (JS). A retrospective review of electronic medical records of patients diagnosed with or referred as a diagnosed case of JS was conducted. Clinical profile, visual electrophysiology, and rehabilitation, along with radiologic features, were
East Asian Prehistoric Human-Face Jade Form 22 (EANJ_FACE_22): High-Resolution Digital Documentation of Morphology, Perforations, Surface Evolution, and Tool Traces 1. Core Statement 1.1 This record contains high-resolution raw visual data of a jade object with a human-face configuration (Form ID: EANJ_FACE_22). 1.2 This dataset serves as the foundational research layer of the digital archiving project for this specimen, providing high-fidelity visual evidence to support morphological
WebClasSeg25 A Dual-Classified Webpage Segmentation Dataset for Functional and Maturity-Based Webpage Analysis This dataset includes current websites for public services (university, hospital, municipality, courts, tourism and other, insurances). The dataset features polygon and HTML segmentation for both visual and text-based methods. Additionally, it provides a functional and maturity classification of the segments. The publication of this dataset was presented at SIGIR 2025. Please cite
In vivo expression of VCAM1 precedes nephron loss following kidney tubular necrosis Nephron loss is a key event during the onset and progression of chronic kidney disease, yet the mechanisms determining whether tubules undergo successful repair or progress to atrophy remain poorly understood. While fibrosis has been proposed to drive progressive organ damage, antifibrotic therapies have failed in clinical trials. Here, we reveal that tubular VCAM1-expression precedes nephron loss,
TRACK-TBI Acute Imaging, Blood Biomarker, and Clinical Indicators of TBI Severity in Humans STUDY PURPOSE: Dataset originated for the manuscript Nelson et al., "Data-driven characterization of traumatic brain injury severity from clinical, neuroimaging, and blood-based indicators. The sample comprises 2545 humans age 17 or older who were enrolled with traumatic brain injury (TBI) in the multicenter, U.S.-based Transforming Research and Clinical Knowledge in TBI (TRACK-TBI) study. DATA
Waikawa Beach - 07 Oct 2019 Waikawa Beach, Horowhenua District. Ongoing study recording of changes at the Stream mouth. Observing river pattern and sand accumulations on the landward side. Source: Objaverse 1.0 / Sketchfab
Evidence that stress-induced changes in surface temperature serve a thermoregulatory function Changes in body temperature following exposure to stressors have been documented for nearly two millennia, however, the functional value of this phenomenon is poorly understood. We tested two competing hypotheses to explain stress-induced changes in temperature, with respect to surface tissues. Under the first hypothesis, changes in surface temperature are a consequence of vasoconstriction that
Microcephaly-chorioretinopathy syndrome, autosomal recessive form. A case report CONTEXT: The autosomal recessive form of microcephaly-chorioretinopathy syndrome is a rare genetic condition that is considered to be an important differential diagnosis with congenital toxoplasmosis.CASE REPORT: Our patient was a seven-year-old white boy who was initially diagnosed with congenital toxoplasmosis. However, his serological tests for congenital infections, including toxoplasmosis, were negative. He
Data from: Airway segmentation and centerline extraction from thoracic CT – comparison of a new method to state of the art commercialized methods Introduction: Our motivation is increased bronchoscopic diagnostic yield and optimized preparation, for navigated bronchoscopy. In navigated bronchoscopy, virtual 3D airway visualization is often used to guide a bronchoscopic tool to peripheral lesions, synchronized with the real time video bronchoscopy. Visualization during navigated bronchoscopy,
Early term ocular changes after cold compress application ABSTRACT Purpose: To examine changes in the eyes after cold compress application at the early stage. Method: A total of 62 eyes from 62 healthy adult participants were included in this cross-sectional and comparative study. The subfoveal choroidal thickness and retinal nerve fiber thickness were measured by spectral-domain ocular coherence tomography. The central corneal thickness, anterior segment volume and depth, iridocorneal angle,
Supporting data for “Digital immunochromatography: A bead-based bilateral zigzag flow immuno-assay with adaptive differential noise correction for rapid and precise protein detection” The early detection of biomarkers at ultra-low concentrations is critical for diagnosing and managing diseases such as neurodegenerative disorders, and ocular conditions. However, current diagnostic techniques face significant limitations in sensitivity, accuracy, and throughput, especially in point-of-care (POC)
Litterfall data from Climoor fieldsite in Clocaenog Forest 1999 - 2011 This dataset includes litterfall data from the experimental plots at the Climoor field site in the Clocaenog forest, NE Wales. Litterfall (natural senesced plant material) was collected in litterfall traps (12 x 7.5cm pots standing slightly proud of the soil/litter surface, emptied monthly). Litterfall was calculated by drying the contents of the traps and weighing the samples; values were calculated for each quadrat (total