# Complete Genome Report of a Hydrocarbon-Degrading _Sphingobium yanoikuyae_ S72
## 3 Results
S72 has some COG categories more in abundance than some other Sphingobium species, which has been previously reported. These COG categories include energy production and conversion (COG C, 6.35), carbohydrate transport and metabolism (COG G, 6.20%), lipid transport and metabolism (COG I, 6.99), secondary metabolites biosynthesis (COG Q, 4.52%), general function prediction only in transport and catabolism (COG R, 9.93) (Table S1). In a related analysis S72 was found to have higher COG abundance than 17 other hydrocarbon-degrading bacteria retrieved from the IMG database (Table 3). \begin{table}
\begin{tabular}{c c c c c} \hline \hline
**COG Category** & \
\begin{tabular}{c} **Number of Genes in S72** \\ **that are Associated with** \\ **Each COG Category** \\ \end{tabular} & **COG Category** &
\begin{tabular}{c} **Number of Genes in S72** \\ **that are Associated with** \\ **Each COG Category** \\ \end{tabular} \\ \hline Chromatin structure and dynamics (B) & 1 & Chromatin structure and dynamics (B) & 1 \\ Energy production and conversion (C) & 250 & Energy production and & 250 \\ Cell cycle control, cell division, chromosome & conversion (C) & 250 \\ partitioning (D) & 31 & Cell cycle control, cell division, \\ chromosome partitioning (D) & 31 & Chromosome partitioning (D) & 31 \\ \hline Amino acid transport and metabolism (E) & 260 & Amino acid transport and metabolism (E) & 260 \\ Nucleotide transport and metabolism (F) & 68 & Nucleotide transport and metabolism (F) & 68 \\ \hline Carbohydrate transport and metabolism (G) & 244 & Carbohydrate transport and metabolism (G) & 244 \\ Coenzyme transport and metabolism (H) & 195 & Coenzyme transport and & 195 \\ Lipid transport and metabolism (I) & 275 & Lipid transport and & 275 \\ Translation, ribosomal structure, and biogenesis (I) & Translation, ribosomal structure, & 186 \\ \hline Transcription (K) & 307 & Transcription (K) & 307 \\ Replication, recombination, and repair (L) & 131 & Replication, recombination, and repair (L) & 131 \\ \hline \hline \end{tabular}
\end{table} 
Table 2: Gene distribution in different COG categories in S72. \begin{table}
\begin{tabular}{c c c c c c c} \hline \hline
**COG List** & \multicolumn{3}{c}{**Gene Abundance**} & **StdErr Other** & **FishersTest Pval** & **FishersTest adjPval** \\ \hline \hline \multirow{3}{*}{**S72 (\%)**} & \multicolumn{3}{c}{**Mean COG in**} & \multirow{3}{*}{**Differences**} & \multirow{3}{*}{**} & \multirow{3}{*}{**} \\  & & (\(\mu\) = 8) (\%) & & & & \\ \hline Secondary metabolites biosynthesis, transport, and catabolism (Q) & 4.52 & 3.54 & 0.99 & 0.06 & 0.00 & 0.03 \\ Mobilomer: propages, transposons (x) & 2.03 & 2.75 & \(-\)0.72 & 0.36 & 0.00 & 0.03 \\ Replication, recombination, and repair (L) & 3.33 & 4.28 & \(-\)0.95 & 0.07 & 0.01 & 0.04 \\ Lipid transport and metabolism (I) & 6.99 & 6.00 & 0.98 & 0.12 & 0.01 & 0.06 \\ Intracellular trafficking, secretion, and vesicular transport (U) & 1.65 & 2.30 & \(-\)0.65 & 0.07 & 0.01 & 0.06 \\ Inorganic ion transport and metabolism (P) & 6.22 & 6.98 & \(-\)0.76 & 0.14 & 0.06 & 0.24 \\ Energy production and conversion (C) & 6.35 & 5.79 & 0.56 & 0.15 & 0.14 & 0.39 \\ Cell cycle control, cell division, chromosome partitioning (D) & 0.79 & 1.05 & \(-\)0.26 & 0.02 & 0.14 & 0.39 \\ \hline \hline \end{tabular}
\end{table} 
Table 3: COG comparison between S72 and other _Sphingobium yanoikuya_ recovered from the IMG database. There are more genes in abundance in the COG categories mobilome: prophages, transposons (COG X, 2.03%), secondary metabolites biosynthesis, transport and catabolism (COG Q, 4.52%), carbohydrate transport and metabolism (COG G, 6.20%), lipid transport and metabolism (COG I, 6.99%), cell wall/membrane/envelope biogenesis (COG M, 6.58%), replication, recombination, and repair (COG L, 3.33%), inorganic ion transport and metabolism (COG P, 6.22%), transcription (COG K, 7.8%), posttranslational modification, protein turnover, chaperones (COG O, 4.27%), and general function prediction only (COG R, 9.93%).