## 3 Results
### Identification of Candidate Genes for Stable Loci
\begin{table}
\begin{tabular}{c c c c c c} \hline \hline
**Gene Id** & **SNP** & **Taint** & **Taint \& SNP** & **Gene Name** & **Protein Name** \\ \hline _BnaA01g01300D_ & A01_1783685 & PH; STP & PH+SUP.A01,1783685 & _KUPS_ & _K+ uptake permease 5_ \\ _BnaA01g03490D_ & A01_1783685 & PH; STP & PH+SUP.A01,1783685 & _MYB69_ & MYB domain protein 69_ \\ _BnaA01g03590D_ & A01_1783685 & PH; STP & PH+SUP.A01,1783685 & _CDC20_ & Cell division cycle 20 \\ _BnaA01g03600D_ & A01_1783685 & PH; STP & PH+SUP.A01,1783685 & _TF3K1_ & initiation factor \\ _BnaA01g03630D_ & A01_1783685 & PH; STP & PH+SUP.A01,1783685 & _SLOMO_ & Slow motion \\ _BnaA02g3510D_ & A02_random,355708 & PH & PH+A02,random,355708 & _RCP_ & Blue copper protein \\ _BnaA02g35620D_ & A02_random,355708 & PH & PH+A02,random,355708 & _AT154_ & RING-H2 finger \\ _BnaA03g43740D_ & A03_22103527 & TSW & TSW,A03,22103527 & _TRANS11_ & Translocase 11 \\ _BnaA03g43820D_ & A03_22103527 & TSW & TSW,A03,22103527 & _AG1_ & Floral homeotic \\ _BnaA03g43840D_ & A03_22103527 & TSW & TSW,A03,22103527 & _M7A1_ & MYOSIN 1 \\ _BnaA03g439330D_ & A03_25488780 & PH & PH+A03,25488780 & _CP_ & Cotton fiber protein \\ _BnaA05g196386410D_ & A05_19496854; & BN & BNA,05,1936854; & _DCNIL_ & Defective in cullh \\ _BnaA05g266410D_ & A05_19496854; & BN & BNA,05,19764389 & _DCNIL_ & nedylation protein \\ _BnaA05g26840D_ & A05_1949839 & BN & BNA,05,1966854; & _FTM4.1_ & Leucine-rich repeat protein \\ _BnaA05g26860D_ & A05_19368584; & BN & BNA,05,19764389 & _FTM4.2_ & Leucine-rich repeat protein \\ _BnaA05g26860D_ & A05_19368584; & BN & BNA,05,19764389 & _FTM4.2_ & Leucine-rich repeat protein \\ _BnaA05g197439 & A05_1976439 & BN & BNA,05,19764389 & _FTM4.2_ & Leucine-rich repeat protein \\ _BnaA06g35950D_ & A02g398999; & SL & B,A06,2398999; & _MST_ & Man1-Src1p-carboxy- \\ _BnaA06g35950D_ & A06_23608274 & SL & SL,B406,23608274 & _MST_ & terminal \\ _BnaA06g35970D_ & A06_23598999; & SL & SL,A06,2359899; & _RPI,32A_ & 60S ribosomal protein L32-1 \\ _BnaA07g328220D_ & A07_random,1623623 & NSS & NSS,A07,random,1623623 & _ABH_ & alpha/beta-Hydrolasses \\ _BnaA07g38350D_ & A07_random,1623623 & NSS & NSS,A07,random,1623623 & _ABH_ & superfamily protein \\ _BnaA07g38330D_ & A07_random,1623623 & NSS & NSS,A07,random,1623623 & _PPRS96_ & Pentatricopeptide repeat 596 \\ _BnaA07g38370D_ & A07_random,1623623 & NSS & NSS,A07,random,1623623 & _FTMNA1_ & ATBase-containing \\ _BnaA09g39690D_ & A09_28188769 & SL & SL,A09,28188769 & _PGF10_ & Polygalaturonase clade F 10 \\ _BnaA09g39690D_ & A09_28188769 & SL & SL,A09,28188769 & _UBQ5_ & Ubiquitin 5 \\ _BnaA01g18690D_ & A10_1367899 & BAI & BAAI0,1367899 & _BnaA10g18690D_ & Hypothetical protein \\ _BnaA10g18490D_ & A10_13678989 & BAI & BAAI0,1367896; & _BNQ2_ & Banguo 2 \\ _BnaA03g09950D_ & C03_4731660 & MIL; MINS & MIL-MINS.C03,4731660 & _CBR2L_ & NADH-cytochrome b5 \\ _BnaC03g098960D_ & C03_4731660 & MIL; MINS & MIL-MINS.C03,4731660 & _CRP2L_ & reductase-like protein \\ _BnaC04g89260D_ & C04_47349279; & PH & PH,C04,47858236 & _JAL24.1_ & Jacalin-related lectin 24 \\ _BnaC04g89270D_ & C04_47349279; & PH & PH,C04,4789279; & _PHC04,4788236_ & _JAL24.2_ & Jacalin-related lectin 24 \\ _BnaC05g10890D_ & C05_6251826 & MINS & MINSC05_6251826 & _HRGP_ & Hydroxyproline-rich \\ _BnaC05g11300D_ & C05_6554451 & HI & HLC05_6554451 & _SCP50.1_ & Sycor protein family protein \\ _BnaC05g11310D_ & C05_6554451 & HI & HLC05_6554451 & _SCP50.2_ & Serine \\ _BnaC05g11350D_ & C05_6554451 & HI & HLC05_6554451 & _SCP50.2_ & Serine-rich peptide \\ _BnaC05g11350D_ & C05_6554451 & HI & HLC05_6554451 & _CRP_ & family protein \\ _BnaC06g20430D_ & C06_225950430 & NSS,C06,225950430; & _GSTU20_ & Glutathione \\ _BnaC06g20510D_ & C06_22570315 & NSS & NSS,C06,22595430; & _QUA2_ & Pectin \\ _BnaC06g25100D_ & C06_2570315 & NSS & NSSC,C2,2570315 & \(P\) & Protein kinase \\ _BnaC06g25100D_ & C06_26638717 & PH; NSS & PH-NSS,C06,2668717 & _PC_ & Superfamily protein \\ _BnaC06g25110D_ & C06_26638717 & PH; NSS & PH-NSS,C06,26638717 & _ACL_ & Actin cross-linking protein \\ _BnaC07g36830D_ & C07_38735522 & SL & SL,C07,38735522 & _PPRS334_ & Pentalore Cappeptide repeat 334 \\ _BnaC07g36960D_ & C07_38735522 & SL & SL,C07,38735522 & _BnaC07g36960D_ & Hypothetical protein \\ _BnaC07g37120D_ & C07_38735522 & SL & SL,C07,3873522 & _EBS_ & Early Bolting in Short Days \\ _BnaC09g33520D_ & C09g36899682 & PH & PH,C09,36899682 & _RTN21_ & Reticulum protein 21 \\ \hline \hline \end{tabular}
\end{table}