## 5 Results and Discussion
### Contingency Tables
\begin{table}
\begin{tabular}{c c c c c c c c c c c} \hline \hline \multirow{2}{*}{**Variant**} & \multicolumn{6}{c}{**Fuzzy (Cluster IDs)**} & \multicolumn{6}{c}{**Hierarchical (Cluster IDs)**} \\ \cline{2-11}  & **0** & **1** & **2** & **3** & **4** & **0** & **1** & **2** & **3** & **4** \\ \hline Alpha & 666 & 1515 & 78 & 2945 & 8762 & 1772 & 3442 & 650 & 8036 & 66 \\ Beta & 171 & 279 & 31 & 627 & 601 & 501 & 491 & 164 & 544 & 27 \\ Epsilon & 637 & 942 & 186 & 3172 & 7847 & 1166 & 3804 & 636 & 6994 & 184 \\ Delta & 839 & 2725 & 28 & 1354 & 2605 & 2997 & 1292 & 827 & 2411 & 24 \\ Gamma & 739 & 669 & 47 & 3034 & 22,140 & 865 & 3501 & 734 & 21,484 & 45 \\ \hline \hline \end{tabular}
\end{table} 
Table 6: Contingency tables of variants vs. clusters (no feature selection, \(k\)-mers) with number of clusters \(=5\). \begin{table}
\begin{tabular}{c c c c c c c c c c c} \hline \hline \multirow{2}{*}{**Variant**} & \multicolumn{6}{c}{**Fuzzy (Cluster IDs)**} & \multicolumn{6}{c}{**Hierarchical (Cluster IDs)**} \\ \cline{2-11}  & **0** & **1** & **2** & **3** & **4** & **0** & **1** & **2** & **3** & **4** \\ \hline Alpha & 629 & 11,005 & 2101 & 2266 & 5 & 2845 & 8651 & 32 & 244 & 2194 \\ Beta & 213 & 508 & 19 & 987 & 0 & 1002 & 605 & 18 & 35 & 67 \\ Epsilon & 713 & 16 & 3597 & 8458 & 0 & 520 & 7324 & 426 & 457 & 4057 \\ Delta & 3419 & 74 & 1042 & 3016 & 0 & 1168 & 2547 & 2 & 2479 & 1355 \\ Gamma & 1590 & 262 & 88 & 61 & 24,628 & 2008 & 22,333 & 497 & 1522 & 269 \\ \hline \hline \end{tabular}
\end{table} 
Table 7: Contingency tables of variants vs. clusters (no feature selection, one-hot embedding) with number of clusters \(=5\). \begin{table}
\begin{tabular}{c c c c c c c c c c c} \hline \hline \multirow{2}{*}{**Variant**} & \multicolumn{6}{c}{**\(k\)-means (Cluster IDs)**} & \multicolumn{6}{c}{**\(k\)-modes (Cluster IDs)**} \\ \cline{2-11}  & **0** & **1** & **2** & **3** & **4** & **0** & **1** & **2** & **3** & **4** \\ \hline Alpha & 1512 & 8762 & 2926 & 680 & 86 & 8 & 11,492 & 284 & 330 & 1852 \\ Beta & 295 & 601 & 626 & 172 & 33 & 64 & 9 & 1604 & 31 & 19 \\ Epsilon & 956 & 7848 & 3155 & 638 & 187 & 0 & 1 & 8532 & 613 & 3638 \\ Delta & 2706 & 2605 & 1342 & 868 & 30 & 0 & 1 & 3192 & 3491 & 867 \\ Gamma & 682 & 22,140 & 3016 & 741 & 50 & 26,519 & 7 & 7 & 61 & 35 \\ \hline \hline \end{tabular}
\end{table} 
Table 4: Contingency tables of variants vs. clusters (no feature selection, \(k\)-mers) with number of clusters \(=5\). \begin{table}
\begin{tabular}{c c c c c c c c c c} \hline \hline \multirow{2}{*}{**Variant**} & \multicolumn{6}{c}{**\(k\)-means (Cluster IDs)**} & \multicolumn{6}{c}{**\(k\)-modes (Cluster IDs)**} \\ \cline{2-11}  & **0** & **1** & **2** & **3** & **4** & **0** & **1** & **2** & **3** & **4** \\ \hline Alpha & 52 & 9716 & 1601 & 2165 & 432 & 11,235 & 13 & 2316 & 25 & 377 \\ Beta & 24 & 650 & 1011 & 18 & 24 & 5 & 81 & 30 & 29 & 1582 \\ Epsilon & 427 & 7972 & 223 & 3626 & 536 & 8 & 0 & 4111 & 18 & 8647 \\ Delta & 5 & 2800 & 484 & 1201 & 3061 & 3 & 0 & 3988 & 3490 & 70 \\ Gamma & 513 & 23,032 & 1425 & 70 & 1589 & 6 & 26,502 & 114 & 0 & 7 \\ \hline \hline \end{tabular}
\end{table} 
Table 5: Contingency tables of variants vs. clusters (no feature selection, one-hot embedding) with number of clusters \(=5\). \begin{table}
\begin{tabular}{c c c c c c c c c c c} \hline \hline \multirow{2}{*}{**Variant**} & \multicolumn{6}{c}{**Fuzzy (Cluster IDs)**} & \multicolumn{6}{c}{**Hierarchical (Cluster IDs)**} \\ \cline{2-11}  & **0** & **1** & **2** & **3** & **4** & **0** & **1** & **2** & **3** & **4** \\ \hline Alpha & 0 & 0 & 0 & 13,966 & 0 & 12,603 & 0 & 0 & 1363 & 0 \\ Beta & 0 & 0 & 0 & 1727 & 0 & 1727 & 0 & 0 & 0 & 0 \\ Epsilon & 0 & 0 & 0 & 12,784 & 0 & 10,348 & 0 & 2436 & 0 & 0 \\ Delta & 0 & 0 & 0 & 7551 & 0 & 7551 & 0 & 0 & 0 & 0 \\ Gamma & 0 & 0 & 0 & 13,269 & 13,360 & 12,569 & 13,076 & 0 & 0 & 984 \\ \hline \hline \end{tabular}
\end{table} 
Table 10: Contingency tables of variants vs. clusters (random Fourier feature selection, \(k\)-mers) with number of clusters \(=5\).