"""Draw a uniform random subset of OMol25 calculations and check they exist on m5250. The population is the 4M-split path list shipped with the release (`4m_paths.txt`, 3,986,753 rows). Sampling is uniform over that list with a fixed seed, so the subset keeps the collection's natural dataset proportions and is exactly reproducible. Writes: subset_.txt one relative path per line, present on m5250, shuffled subset__missing.txt paths sampled but not found locally subset__counts.tsv per-dataset counts, sampled vs population """ import argparse, os, random, sys from collections import Counter M5250 = "/global/cfs/projectdirs/m5250/OMol_elec" PATHS = ("/global/cfs/projectdirs/m5293/ericqu/omol_elec_process/gbw_pilot/" "source_root/4m_paths.txt") OUTDIR = "/global/cfs/projectdirs/m5293/ericqu/omol_elec_process/subsets" def dataset_of(rel): """Top-level dataset name; the omol/ tree is grouped by its second and third component.""" parts = rel.split("/") if parts[0] == "omol" and len(parts) > 2: return "/".join(parts[:3]) return parts[0] def main(): ap = argparse.ArgumentParser() ap.add_argument("-n", type=int, default=100_000) ap.add_argument("--seed", type=int, default=20260903) ap.add_argument("--paths", default=PATHS) ap.add_argument("--outdir", default=OUTDIR) ap.add_argument("--check", type=int, default=5000, help="how many sampled paths to stat for a miss-rate estimate (0 = none)") args = ap.parse_args() with open(args.paths) as fh: pop = [l.strip() for l in fh if l.strip()] print(f"population: {len(pop):,} paths", flush=True) rng = random.Random(args.seed) n = min(args.n, len(pop)) sample = rng.sample(pop, n) print(f"sampled uniformly: {n:,} (seed {args.seed})", flush=True) os.makedirs(args.outdir, exist_ok=True) # Stat-ing every path is slow on CFS (huge directories), and Pass A detects a missing archive # for free, so only a subsample is checked here to estimate the miss rate. missing = [] ncheck = min(args.check, n) for i, rel in enumerate(sample[:ncheck]): if not os.path.exists(os.path.join(M5250, rel, "orca.tar.zst")): missing.append(rel) if (i + 1) % 1000 == 0: print(f" checked {i+1:,}/{ncheck:,}: {len(missing):,} missing", flush=True) present = sample rng.shuffle(present) base = os.path.join(args.outdir, f"subset_{n//1000}k") with open(base + ".txt", "w") as fh: fh.write("\n".join(present) + "\n") with open(base + "_missing.txt", "w") as fh: fh.write("\n".join(missing) + ("\n" if missing else "")) pop_counts = Counter(dataset_of(p) for p in pop) got_counts = Counter(dataset_of(p) for p in present) with open(base + "_counts.tsv", "w") as fh: fh.write("dataset\tpopulation\tsampled\tpct_of_dataset\n") for ds in sorted(pop_counts, key=lambda d: -pop_counts[d]): fh.write(f"{ds}\t{pop_counts[ds]}\t{got_counts.get(ds,0)}\t" f"{100*got_counts.get(ds,0)/pop_counts[ds]:.3f}\n") rate = (100 * len(missing) / ncheck) if ncheck else float("nan") print(f"\nsubset {len(present):,} paths; miss rate on {ncheck:,} checked: " f"{len(missing):,} ({rate:.2f}%)") print(f"datasets covered: {len(got_counts)}/{len(pop_counts)}") zero = [d for d in pop_counts if d not in got_counts] if zero: print("datasets with no sampled member:") for d in zero: print(f" {d} (population {pop_counts[d]:,})") print(f"\nwrote {base}.txt / _missing.txt / _counts.tsv") if __name__ == "__main__": main()