{
    "title": "Invocation manifest for HCP: Functional Preprocessing Pipeline",
    "$schema": "http://json-schema.org/draft-04/schema#",
    "type": "object",
    "properties": {
        "config": {
            "type": "object",
            "properties": {
                "fMRIName": {
                    "type": "string",
                    "default": "rfMRI_REST"
                },
                "BiasCorrection": {
                    "type": "string",
                    "default": "NONE"
                },
                "MotionCorrection": {
                    "type": "string",
                    "default": "MCFLIRT"
                },
                "AnatomyRegDOF": {
                    "type": "integer",
                    "default": 6
                },
                "RegName": {
                    "type": "string",
                    "default": "Empty"
                }
            },
            "required": [
                "fMRIName",
                "BiasCorrection",
                "MotionCorrection",
                "AnatomyRegDOF",
                "RegName"
            ]
        },
        "inputs": {
            "type": "object",
            "properties": {
                "StructZip": {
                    "type": "object",
                    "properties": {
                        "type": {
                            "enum": [
                                "zip"
                            ]
                        }
                    }
                },
                "fMRITimeSeries": {
                    "type": "object",
                    "properties": {
                        "type": {
                            "enum": [
                                "nifti"
                            ]
                        }
                    }
                },
                "fMRIScout": {
                    "type": "object",
                    "properties": {
                        "type": {
                            "enum": [
                                "nifti"
                            ]
                        }
                    }
                },
                "GradientCoeff": {
                    "type": "object",
                    "properties": {}
                },
                "SpinEchoPositive": {
                    "type": "object",
                    "properties": {
                        "type": {
                            "enum": [
                                "nifti"
                            ]
                        }
                    }
                },
                "SpinEchoNegative": {
                    "type": "object",
                    "properties": {
                        "type": {
                            "enum": [
                                "nifti"
                            ]
                        }
                    }
                },
                "SiemensGREMagnitude": {
                    "type": "object",
                    "properties": {
                        "type": {
                            "enum": [
                                "nifti"
                            ]
                        }
                    }
                },
                "SiemensGREPhase": {
                    "type": "object",
                    "properties": {
                        "type": {
                            "enum": [
                                "nifti"
                            ]
                        }
                    }
                },
                "FreeSurferLicense": {
                    "type": "object",
                    "properties": {}
                }
            },
            "required": [
                "StructZip",
                "fMRITimeSeries",
                "FreeSurferLicense"
            ]
        }
    },
    "required": [
        "config",
        "inputs"
    ]
}