cobra (conda): Constraint-based reconstruction and analysis (COBRA) methods are widely used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes. COBRApy is a constraint-based modeling package that is designed to accommodate the biological complexity of the next generation of COBRA models and provides access to commonly used COBRA methods, such as flux-balance analysis, flux variability analysis, and gene deletion analyses.
Keywords: biochemistry|bioinformatics|cell-design|cobra|computational-biology|flux|metabolic-models|metabolic-network|metabolism|modeling|python|sbml|sbml-model|sbml-simulation|strain-engineering|systems-biology