org.draegerlab:sbscl (maven):  The Systems Biology Simulation Core Library provides an efficient and exhaustive Java™ implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution. This library is based on the JSBML project. It can be used on every operating system for which a Java Virtual Machine is available. Version 2.0 and beyond support simulation in three frameworks: constraint-based analysis, stochastic simulation, and ordinary differential equation systems. SBSCL supports SED-ML and COMBINE archives in OMEX format. 
Keywords: api|constraint-based-modeling|fba|flux-balance-analysis|java|library|linear-programming|numerical-simulations|ode-solver|ordinary-differential-equations|sbml|sbml-model|simulation|simulations|solver|steady-state|systems-biology-simulation|time-series-analysis