ClustalParser (hackage): Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign  Clustal tools are multiple sequence alignment tools for biological sequence like DNA, RNA and Protein. For more information on clustal Tools refer to http://www.clustal.org/.  Mlocarna is a multiple sequence alignment tool for RNA sequences with secondary structure output. For more information on mlocarna refer to http://www.bioinf.uni-freiburg.de/Software/LocARNA/.  Cmalign is a multiple sequence alignment program based on RNA family models and produces ,among others, clustal output. It is part of infernal http://infernal.janelia.org/.
Keywords: bioinformatics|gpl|library|program