TITLE: Polychromatic UV Fluence (Dose) Response Determination
AUTHORS: Daniel Ma, NATALIE HULL

[DESCRIPTION]
The purpose of this protocol is to document the steps used for determination of UV doses for polychromatic UV sources such as UV LEDs, excimer lamps, medium pressure mercury lamps. The method is not limited to polychromatic light sources, but can also be used for monochromatic sources, such as low pressure mercury lamps. The method described in this protocol has been modified to account for polychromatic UV radiation sources (Linden and Darby, 1997) and is based on  method is based on "Standardization of Methods for Fluence (UV Dose) Determination in Bench-Scale UV Experiments" (Bolton and Linden, 2003). If you cite your use of this protocol, you should also cite the relevant original literature. For further information on using UV LEDs and measuring UV intensity, refer to the following publications: Kheyrandish et al., (2018), Kheyrandish et al., (2017), Kheyrandish et al., (2018), Sholtes et al., (2019).

[BEFORE_START]
For microbial samples, sanitize bench top surfaces with 70% ethanol.

[STEPS]
SECTION: UV Dose Spreadsheet
1. UV Dose Spreadsheet:   

Here is an example spreadsheet filled out with radiometer factors, absorbance scan of sample, UV emission spectra of a low pressure mercury lamp, and sample geometry:   

This protocol will guide users through important parts of the UV Dose Spreadsheet.
SECTION: Performing UV exposures
10. Perform UV exposures by transferring working solution of sample to sample container (sterile container for microbial samples), adding a stir bar (sterile for microbial samples), and placing on the magnetic stir plate. Expose the sample to UV irradiation for the calculated exposure times. Expose samples in random order (e.g., not ascending or descending order of UV dose values).

 

 

 

SECTION: Sample Preparation
3. Select Sample Matrix. The UV dose responses of different sample matrices may be characterized using this protocol. 

Sample types may include, but are not limited to, the following:
Bio-molecular samples (e.g. bacteria, viruses, fungal spores, etc.)
Environmental samples (e.g. wastewater, surface water, groundwater, etc.)
Chemicals

SECTION: Preparation of UV Light Source
2. Obtain UV Source Emission Spectra. Before your experiment, ensure that you have obtained the UV lamp emission spectra with a UV-VIS spectroradiometer (NIST-traceable is required). Warm up the UV source. Typically, 15 minutes is sufficient for light emission to stabilize. UV source stabilization can be confirmed using a radiometer.

 


SECTION: Preparation of UV Light Source
2.4. Interpolation can be performed on the emission spectra values to obtain integer wavelengths using the tab in the UV Dose Determination spreadsheet titled "Interpolation". Interpolation can be also performed in Microsoft Excel or other computational software (e.g., in R Studio with the 'approx' function). 

 

SECTION: Preparation of UV Light Source
2.2. Measure the UV spectra by positioning the spectroradiometer below the UV source. Set scan parameters such as boxcar width, scans to average, and integration time. Obtain background scan (e.g., dark scan with no light exposure) before taking UV measurements.

 

 

 

SECTION: Preparation of UV Light Source
2.3. Export the spectroradiometer measurements. If the spectroradiometer output does not provide irradiance measurements at integer value wavelengths, interpolation of the wavelengths and irradiance measurements is required to use the data in the UV Dose Spreadsheet.

 

SECTION: Preparation of UV Light Source
2.5. Check UV Spectra Characteristics. The peak and average wavelength can be obtained from the tab "Spectra Characteristics". The fp radiometer factor should be between 1–1.05. Values higher than this will adversely affect UV exposure times.

 
 
 

SECTION: Performing UV exposures
11. After the exposure time is complete, replace the shutter to block off UV irradiation. Transfer irradiated samples to appropriate containers. For microbial samples, use sterile technique and equipment (e.g., pipetting) to transfer sample to sterile containers (e.g., test tubes). Save samples for downstream analysis and quantification.
SECTION: Sample Preparation
4. Determine Volume of Working Solution Needed. To determine the minimum total volume of working solution ( ) needed:

  

  = Number of UV doses you want to include in your experiment (include no dose, i.e. no UV exposure)
  = Sample volume needed per UV dose

 


 


 

SECTION: Sample Preparation
6. Prepare working solution for the chosen sample matrix. After calculating the volume needed and the target concentration, prepare the working solution of your sample by using the appropriate diluent, if necessary. Common diluents of samples include: DI water and phosphate buffered saline (PBS).

 

SECTION: Sample Preparation
6.1. Preparing bio-molecular samples. If using bio-molecular samples, prepare microorganisms according to your laboratory protocols. Use best practices and aseptic technique. Biological triplicates are recommended for bio-molecular studies.


 


 


 

SECTION: Sample Preparation
6.2. Prepare environmental samples. If using environmental samples, obtain environmental samples and store in appropriate containers and temperatures. Environmental samples may be used to reflect environmental water quality (e.g., wastewater, river water, groundwater). Microorganisms may be spiked into environmental samples. Store chemicals in appropriate storage conditions (e.g., container, temperature, light) before UV exposures. 
SECTION: Sample Preparation
7. Measure sample absorbance. Use a UV-VIS spectrophotometer to obtain an absorbance spectra of working stock solution. Sample absorbance is required for determining the UV dose by accounting for the UV light absorbance at different wavelengths and for determining the Water Factor, one of the UV irradiance adjustment factors.

 

SECTION: Sample Preparation
6.3. Prepare chemical samples. If using chemical samples, prepare stock solutions and working stock solutions using best practices for handling and preparing chemicals. Perform dilutions using an appropriate diluent. Store chemicals in appropriate storage conditions (e.g., container, temperature, light) before UV exposures. 
SECTION: Sample Preparation
7.1. Prepare sample and dilutions for absorbance scan. Samples of high concentration may need to be diluted for UV-VIS measurements. Dilute samples using the appropriate diluent. Record the dilution factor, which will be used to correct absorbance scan data for the original solution.
SECTION: Sample Preparation
7.2. Turn on UV-VIS spectrophotometer. Warm up at least 10 minutes. Longer warm up time for the lamps will increase performance. Adjust the default instrument settings if desired (e.g., scan speed, slit height, wavelength range, etc.).
SECTION: Sample Preparation
7.3. Obtain absorbance measurements:
Load a blank sample (e.g. cuvette with DI water).
Zero the instrument. This zeroes the reading at the highest wavelength.
Baseline the instrument. This zeroes the readings at all wavelengths. A baseline scan is shown in Figure A below.
Optional: Obtain absorbance scan of distilled water immediately after the baseline (the absorbance scan values should be near 0 for all wavelengths). If the instrument was properly zeroed and a baseline acquired.
Obtain sample absorbance scan(s).
Empty cuvette. Dispose of sample in proper containers.
Rinse cuvette at least once with working stock solution.
Obtain at least duplicate absorbance scan per sample.
Export tabulated absorbance scan data. Correct for any dilution factor, if necessary.
Calculate the average absorbance from the replicate measurements.
Paste the average absorbance at each wavelength in the Absorbance tab in the UV Dose Spreadsheet.


 


 

 

SECTION: Measuring UV irradiance
8. Set up UV source and radiometer (must be NIST-calibrated). Select the distance between UV source and sample surface. Record this value in the UV Dose Spreadsheet. 

To obtain UV irradiance measurements, set up the radiometer so that the radiometer detector plane is at the same level as the sample surface during UV exposures (Figure A). Use an adjustable lab jack to achieve the same sample surface plane during sample exposure and radiometer measurements. Check the location of the reference plane of the radiometer, as shown in Figure B.

 
 
 
  


SECTION: Measuring UV irradiance
9. Obtain Petri Factor. The UV dose calculation requires the Petri Factor to account for the spatial non-uniformity of the UV source emission over the surface of the water sample in the container (e.g., Petri dish). The Petri Factor is obtained by measuring the UV irradiance at the sample surface plane at 0.5 cm intervals in the x- and y-direction starting from the center of the sample dish.
SECTION: Measuring UV irradiance
9.1. Ensure the radiometer factor is set to the calibration value for the peak wavelength. The peak wavelength and its corresponding radiometer factor can be found in the Fluence Calculation tab. 

 

 



SECTION: Measuring UV irradiance
9.2. Create a grid for measuring UV irradiance at 0.5 cm intervals in the x- and y-direction from the center of the sample dish.

 

  

SECTION: Measuring UV irradiance
9.3. Depending on the size of the dish, the UV Dose Spreadsheet will indicate the minimum number of measurements to take in each direction.

 
 
 

SECTION: Measuring UV irradiance
9.4. Measure the center of dish irradiance. Input the irradiance in the Fluence Calculations tab.

 
 

 


SECTION: Measuring UV irradiance
9.5. Input values for sample geometry in the Fluence Calculations tab: solution volume added to Petri dish, Petri dish internal diameter, distance from UV lamp to top of water surface. The spreadsheet will automatically calculate the water path length.

 

SECTION: Measuring UV irradiance
9.6. Check that the UV irradiance adjustment factors in the Fluence Calculations tab are within the recommended range of values:

 
The center of dish irradiance ( ) is corrected by the adjustment factors to obtain the average irradiance ( avg):

  avg   

 

SECTION: Measuring UV irradiance
9.7. Weighting factors. Weighting factors to account for microorganism or biomolecule action spectra can be applied to UV dose calculations. In general, no weighting factor is applied (NA). If weighting is applied, record the weighting type.

 

SECTION: Measuring UV irradiance
9.8. Calculate exposure times for pre-determined UV doses. The zero (0; unexposed) dose sample is very important must be taken. Consider taking the zero dose sample multiple times during the experiment (e.g., beginning, middle, end). Dose responses should have at least 3-5 points in addition to the zero dose. Check the literature for expected dose responses for the specific microorganism.

 

SECTION: Preparation of UV Light Source
2.1. Set up the UV-VIS spectroradiometer and the acquisition software. Load calibration data provided with the calibrated UV-VIS spectroradiometer.
SECTION: Sample Preparation
5. Choose working stock concentration. The concentration should be chosen to quantify observable reductions for the highest UV dose. Consider personnel safety when choosing a stock concentration. Avoid risk of exposure to high concentrations of hazardous chemicals.
SECTION: Acknowledgements
12. We acknowledge the past and present Hull Lab members who contributed to the development and review of this protocol. The UV dose spreadsheet provided in this protocol has undergone iterative changes. It has been modified from UV dose spreadsheets from the Linden Lab and changes have been made based on personal communications from Dr. Jim Bolton.