TITLE: Phytoplankton Storm Simulation
AUTHORS: AB

[DESCRIPTION]
Lab processing guide for phytoplankton culture experiments

[STEPS]
SECTION: Pre-Experimental Prep
1. Prior to the experiment you should prepare all treatment container. Be sure they are acid washed and you have plenty of nutrient 
SECTION: Experimental Layout
6. Treatments should be assigned to a Latin Square design in a 5x5 grid

 

Treatments:
A - Control
B - Low Storm (50% salinity reduction)
C - High Storm (25% salinity reduction)
D - Low DI
E - High DI
SECTION: Culture Sample Collection
2. Bring all 25 culture bottles to the OL pier along with two extra sampling bottle for HPLC analysis & nutrient. You will also need a bucket, siphon and a 153micron mesh in addition to the normal mesh size. 
7. Once the treatment has started, record the exact start time and let incubations occur for 48hrs.
SECTION: Experimental Breakdown  &amp; Processing
8. To break down the experiment follow the steps for each bottle. Remove all bottles from the table and bring into the lab space. To reduce growth and plankton activity as you work through each bottle, place all bottles into the walk in refrigerator.
SECTION: Culture Sample Collection
3. Prior to culture collection, take the standard samples with a net-tow for planktoscope imaging. Take two whole water samples for  HPLC and nutrient analyses as well. Take the YSI for salinity and temperature measurements as well. 
SECTION: Culture Sample Collection
4. Collect a surface water sample with a bucket. Using a siphon, you should fill water form the bucket into each container. Fill the containers according to their labels for each treatment
SECTION: Experimental Breakdown  &amp; Processing
9. For each bottle, 375mL should be set aside for HPLC, 125mL for scope counts, and 500mL for planktoscope/flowcam imaging.
SECTION: Experimental Breakdown  &amp; Processing
9.1. First, take 100mL from the sample and immediately preserve it for later settling and scope counts
SECTION: Experimental Breakdown  &amp; Processing
9.2. Then, take 500mL for planktoscope/flowcam imaging. To prepare this sample, filter onto a 20-micron sieve. Then, rinse the filter contents into a beaker. Aim for around a 25mL sample - this corresponds to a 20x concentration factor. It should be no more than 50mL. The more concentrated the better.
SECTION: Culture Sample Collection
4.1. Control - 1000mL
Low DI/Swamp - 750mL
High DI/Swamp - 500mL
SECTION: Culture Sample Collection
5. Collect swamp water from the nearby forest drainage area. Also get about a bucket worth of DI water. Rinse the bucket a few times prior to adding DI water. Bring DI and swamp water to the flow through seawater table.

SECTION: Culture Sample Collection
5.1. Treatments should be added accordingly and set into the experimental layout grid.
SECTION: Experimental Breakdown  &amp; Processing
9.3. Planktoscope imaging will be done with the live sample. Generally, you can follow the planktoscope use guide. However, it is important to preserve the sample after imaging because it is so little. Thus be sure to collect the waste and not contaminate it. DI rinse between samples but don't bother with ethanol until the final clean-up. For each sample, preserve with Lugol's and store
SECTION: Experimental Breakdown  &amp; Processing
9.4. HPLC processing. Follow the standard water filtration method from the EEL lab. Be sure to record the final filtered volume for each sample. Freeze filters immediately in the -80 storage area.
SECTION: Post-Experiment Clean up
10. Once complete with the experiment, be sure to clean up and acid wash all necessary items (culture bottles). Metadata entry should also occur