iGEM 2015 — Team USTC-Software

# Team:USTC-Software/Notebook

* [Home](/Team%3AUSTC-Software "Team:USTC-Software")
* [Project](/Team%3AUSTC-Software/Description "Team:USTC-Software/Description")
  + [Description](/Team%3AUSTC-Software/Description "Team:USTC-Software/Description")
  + [Demo](/Team%3AUSTC-Software/Results "Team:USTC-Software/Results")
  + [Future Work](/Team%3AUSTC-Software/Results#Future_Work "Team:USTC-Software/Results")
  + [Validation](/Team%3AUSTC-Software/Results#Validation "Team:USTC-Software/Results")
* [Team](/Team%3AUSTC-Software/Team "Team:USTC-Software/Team")
  + [Team Members](/Team%3AUSTC-Software/Team#Members "Team:USTC-Software/Team")
  + [Instructors](/Team%3AUSTC-Software/Team#Instructors "Team:USTC-Software/Team")
* [Technology](/Team%3AUSTC-Software/Software "Team:USTC-Software/Software")
  + [Front End](/Team%3AUSTC-Software/Software#Front_End "Team:USTC-Software/Software")
  + [Back End](/Team%3AUSTC-Software/Software#Back_End "Team:USTC-Software/Software")
  + [Algorithms](/Team%3AUSTC-Software/Software#Algorithms "Team:USTC-Software/Software")
  + [Modeling](/Team%3AUSTC-Software/Modeling "Team:USTC-Software/Modeling")
* **Notebook**
* [Requirements](/Team%3AUSTC-Software/Medal "Team:USTC-Software/Medal")
  + [Medal](/Team%3AUSTC-Software/Medal "Team:USTC-Software/Medal")
  + [Safety](/Team%3AUSTC-Software/Safety "Team:USTC-Software/Safety")
  + [Collaborations](/Team%3AUSTC-Software/Collaborations "Team:USTC-Software/Collaborations")
* [Human Practices](/Team%3AUSTC-Software/Practices "Team:USTC-Software/Practices")
  + [Technological Activity Week](/Team%3AUSTC-Software/Practices#Technological_Activity_Week "Team:USTC-Software/Practices")
  + [Meetups](/Team%3AUSTC-Software/Practices#Meetups "Team:USTC-Software/Practices")
* [Attributions](/Team%3AUSTC-Software/Attributions "Team:USTC-Software/Attributions")
  + [Support](/Team%3AUSTC-Software/Attributions#Support "Team:USTC-Software/Attributions")
  + [iGEM HQ](/Team%3AUSTC-Software/Attributions#iGEM_HQ "Team:USTC-Software/Attributions")
  + [Fund](/Team%3AUSTC-Software/Attributions#Fund "Team:USTC-Software/Attributions")
  + [Database](/Team%3AUSTC-Software/Attributions#Database "Team:USTC-Software/Attributions")

![](/wiki/images/f/f8/USTC-Software-Notebookhead.jpeg)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Team Established

USTC-Software team established, everyone was introduced to the others.

Mar 7
![](/wiki/images/d/dd/USTC-Software-Notebook_1.jpeg)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## First Meeting

We divided the whole team into four groups: Poject Group, Front-end Group, Back-end Group, Design Group.

Mar 14
![](/wiki/images/8/80/USTC-Software-Notebook_2.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Second Meeting

Every group gived a report based on the research about previous teams. Design group gived a plan for furture work like the propaganda products what we would need to do including design for front-end, design for wiki, team logo, brochure, poster and so on. Back-end group tried to crawl data from Registry of Standard Biological Parts and classify them.

Mar 22
![](/wiki/images/f/f8/USTC-Software-Notebook_3.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Third Meeting

Front-end group should be familiar with 2014 USTC-Software wiki and try to rewrite their wiki and acquaint with HTML&CSS&JavaScript. Back-end group should read Biopano codes in GitHub and learn Python in the progress. Design group tried to design a logo related to iGEM or Synthetic Biology. Project group should read more materials like books, paper and wiki to survey Synthetic Biology and previous projects.

Mar 29
![](/wiki/images/5/56/USTC-Software-Notebook_4.jpeg)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Fourth Meeting

Because of Qingming Festival, some members gone back home. As a result, the meeting is just a communication about the iGEM and the project and progress.

Apr 6
![](/wiki/images/f/fd/USTC-Software-Notebook_5.jpeg)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Fifth Meeting

We adjusted the meeting style. Previously, we have the entire conference, that is, when one person introduced his idea, the others listened to him. Now, every group had 5-10 minutes to display what they did. Then, the group had their own meeting to discuss the problems and try to solve them.

Apr 12
![](/wiki/images/9/90/USTC-Software-Notebook_6.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Sixth Meeting

Introduce NCTU Meetup, CCiC and Human Practice to members. Collect members information who were willing to attend meetups. Team manager arranged materials for meetups.

Apr 26
![](/wiki/images/3/3c/USTC-Software-Notebook_7.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Seventh Meeting

Project group, Front-end group and Back-end group discussed together. Front-end and Back-end groups evaluated Project group’s ideas in the possibility of technology.

May 3
![](/wiki/images/4/4e/USTC-Software-Notebook_8.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Eighth Meeting

Put forward elementary idea about project. Publish the standard for selecting memebers for the Giant Jamboree and collect the suggestions from everyone in USTC-Software.

May 10
![](/wiki/images/7/7e/USTC-Software-Notebook_9.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Human Practice

Our Human Practice in Technological activity week.

May 16
![](/wiki/images/8/85/USTC-Software-Notebook_10.jpeg)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Ninth Meeting

Lingyuan Ji promoted an ODE method for simulating biological system. Add some details for standard for selecting members for the Giant Jamboree.

May 17
![](/wiki/images/e/e4/USTC-Software-Notebook_11.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Tenth Meeting

Select members for the Giant Jamboree by poll. Every group gave a presentation about their work and communication among group members and communication with other groups.

May 24
![](/wiki/images/9/95/USTC-Software-Notebook_12.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Eleventh Meeting

Change meeting place. Publish final members list for the Giant Jamboree. Every group gave their presentations. Read Systems Bioinformatics written by Gil Alterovitz and Marco F. Ramoni together and try to know the principles of [BioJADE](http://web.mit.edu/jagoler/www/biojade/)

May 31
![](/wiki/images/9/9c/USTC-Software-Notebook_13.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Twelveth Meeting

Continue study the BioJADE and share idea with others. Front-end and Back-end addressed programming problems by communication among the group.

Jun 7
![](/wiki/images/8/88/USTC-Software-Notebook_14.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Thirteenth Meeting

Tianyi Cui introduced 2014 [SYSU-Software](https://2014.igem.org/Team%3ASYSU-Software) project. Ziyu Wu introduced the function and advantage of our software. Prepare materials for visa.

Jun 14
![](/wiki/images/1/1d/USTC-Software-Notebook_15.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Great Summer

Embellish summer working place. Summer began!

Jul 4
![](/wiki/images/6/64/USTC-Software-Notebook_16.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Submit Project Description

Our Project Description is [here](https://igem.org/2015_Judging_Form?id=1594).

Jul 15
![](/wiki/images/6/6d/USTC-Software-Notebook_17.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Get Visa

All members for the Giant Jamboree succeeded in visa.

Jul 17
![](/wiki/images/f/fd/USTC-Software-Notebook_18.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## NCTU Meetup

Xinan Chen, Ziyu Wu, Tianyi Cui, Xiaofan Yuan represented USTC-Software to attend NCTU Meetup. We shared our project with other teams.

From Jul 19 to Jul 23
![](/wiki/images/8/82/USTC-Software-Taiwan1.jpeg)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Submit Project Info

Submit track selection, title and abstract about project. You could check out in [here](https://igem.org/2015_Judging_Form?id=1594).

Aug 7
![](/wiki/images/1/16/USTC-Software-Notebook_20.jpeg)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Communication

Communication with USTC and HFUT-China teams.

Aug 8
![](/wiki/images/0/05/USTC-Software-Notebook_21.png)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## System Integration Test

Front-end and Back-end started system integration test.

Aug 17
![](/wiki/images/5/5e/USTC-Software-Notebook_22.jpeg)

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Feature Freeze

Feature Freeze

Aug 28

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Team Banner

Submit team banner for Giant Jamboree.

Aug 28

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Communication With Teacher

Communication with Pro. Zhi Liang

Sep 1

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Collaboration

Submit fringe detection program for 2015 [USTC](https://2015.igem.org/Team%3AUSTC) team

Sep 1

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Wiki

Home in wiki completed.

Sep 4

![Picture](/wiki/images/7/76/USTC-Software-Notebookicon.svg)

## Bug Fix

You could see our GitHub issues in [here](https://github.com/igemsoftware/USTC-Software2015/issues).

From Sep 4 to Sep 18

University of Science and Technology of China
No.96, Jinzhai Road, Hefei, Anhui, P.R.China
USTC-Software 2015

University of Science and Technology of China

©2015 USTC-Software, University of Science and Technology of China. All rights reserved.

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