title: Practical bias variance decomposition

authors: Bouckaert, Remco R.

subjects: computer science

abstract: Bias variance decomposition for classifiers is a useful tool in understanding classifier behavior. Unfortunately, the literature does not provide consistent guidelines on how to apply a bias variance decomposition. This paper examines the various parameters and variants of empirical bias variance decompositions through an extensive simulation study. Based on this study, we recommend to use ten fold cross validation as sampling method and take 100 samples within each fold with a test set size of at least 2000. Only if the learning algorithm is stable, fewer samples, a smaller test set size or lower number of folds may be justified.

text: Practical bias variance decomposition Bias variance decomposition for classifiers is a useful tool in understanding classifier behavior. Unfortunately, the literature does not provide consistent guidelines on how to apply a bias variance decomposition. This paper examines the various parameters and variants of empirical bias variance decompositions through an extensive simulation study. Based on this study, we recommend to use ten fold cross validation as sampling method and take 100 samples within each fold with a test set size of at least 2000. Only if the learning algorithm is stable, fewer samples, a smaller test set size or lower number of folds may be justified.

year: 2008

title: A new record of Percursaria percursa (Ulvaceae, Ulvales) on the North Island, New Zealand

authors: Pratt, S.J.

subjects: Percursaria percursa

abstract: The filamentous green alga Percursaria percursa (Ulvaceae, Ulvales) was recorded for the first time on the North Island of New Zealand at mokoroa Estuary, Tauranga Harbour. This species is previously known within New Zealand from only two records, both from the South Island. In Tauranga Harbour, this species was restricted to anoxic estuarine sediments where mangrove forests had been mulched, and mulchate left in situ. Percursaria percursa was found intertwined with Ulva spp. and Rhizoclonium spp. Surveys of other North and South Island estuaries suggest that this alga, although occurring as part of nuisance green algal blooms in Tauranga Harbour, has only colonized human-impacted locations, and has not yet been observed in natural' estuarine ecosystems in New Zealand. As this species was found intertwined with other mat-forming filamentous green algae, it can easily be misidentified in the field, leading to both over- and under-reporting of species occurrence.

text: A new record of Percursaria percursa (Ulvaceae, Ulvales) on the North Island, New Zealand The filamentous green alga Percursaria percursa (Ulvaceae, Ulvales) was recorded for the first time on the North Island of New Zealand at mokoroa Estuary, Tauranga Harbour. This species is previously known within New Zealand from only two records, both from the South Island. In Tauranga Harbour, this species was restricted to anoxic estuarine sediments where mangrove forests had been mulched, and mulchate left in situ. Percursaria percursa was found intertwined with Ulva spp. and Rhizoclonium spp. Surveys of other North and South Island estuaries suggest that this alga, although occurring as part of nuisance green algal blooms in Tauranga Harbour, has only colonized human-impacted locations, and has not yet been observed in natural' estuarine ecosystems in New Zealand. As this species was found intertwined with other mat-forming filamentous green algae, it can easily be misidentified in the field, leading to both over- and under-reporting of species occurrence.

year: 2013

title: Microplastics in the marine environment: Sediment contaminant and bioaccumulation rates in bivalves within the Bay of Plenty

authors: Lewis, Anita

subjects: Microplastic

abstract: Microplastic pollution is recognised as a significant anthropogenic issue in coastal ecosystems around the world. The accumulation of microplastics in coastal environments causes both direct and indirect effects on these already vulnerable ecosystems. Limited information was available of the scale of microplastic pollution across New Zealand, including the Bay of Plenty. To enable a greater understanding of microplastic accumulation in sediment and bioaccumulation in bivalves sampling  within the Bay of Plenty area was conducted.
The presence of  microplastic particles was investigated from sediment and shellfish samples collected across the Bay of Plenty, from Waihī Beach in the West, to Ōpōtiki in the East. Three species of shellfish were collected that differed in their functional feeding modes (filter feeder vs deposit feeder): tuangi (cockle: Austrovenus stuchburyi), hanikura (wedge shell: Macomona liliana), and tuatua (surf clam: Paphies subtriangulata). Microplastic particles from sediment and bivalves were separated from the sediment and shellfish samples in the laboratory and identified using visual light stereomicroscopy. Microplastic particles were identified and quantified into three categories: fragments, fibres, and films. 
Significant numbers of fibres, as well as some fragments and films were found to be present in the sediment throughout all sampling locations. The highest density of microplastic particles in sediment (up to 11,087.9 per m²) were observed at sites that were closed to municipal sewage outfalls and populated areas, and the lowest densities were observed at Matakana Island (63 particles per m²). Sites in Ōhiwa Harbour showed an average of 504.6 particles per m² at the high tide zone and 477.6 particles per m² at the intertidal zone in the sediment. Ohiwa Harbour showed similar levels of microplastic accumulation in sediment compared to Tauranga Harbour. However, higher levels of microplastic particles were found in the sediment at open coast sites.
All shellfish sampled had at least one microplastic particle found in their tissues. The highest number of microplastics in shellfish were found in the wedge shell (23 particles), with the least from the cockles (1). Statistical analysis reveal that the deep burrowing deposit feeder (Macomona liliana) demonstrated an elevated amount of microplastic particles ingested relative to the shallow burrowing suspension feeding cockle (Austrovenus stutchburyi). A notable amount of microplastic particles were also found at all sampling locations for the culturally important tuatua (Paphies subtriangulata). However, comparing all three bivalve species, the deposit feeding M. liliana, ingested higher amounts than both the A. stutchburyi and P. subtriangulata, which could be related to their different functional feeding modes in the marine environment. This research provides baseline information to assess the extent of microplastic pollution in sediments and the potential for bioaccumulation in bivalve species with differentiated feeding modes and functional roles in the marine environment. 
The problem with microplastics is a global emerging contaminant. Preventing the problem of plastic wastes in New Zealand will require change across all aspects of society, along with policy regulations to mitigate the issue of microplastic pollution.

text: Microplastics in the marine environment: Sediment contaminant and bioaccumulation rates in bivalves within the Bay of Plenty Microplastic pollution is recognised as a significant anthropogenic issue in coastal ecosystems around the world. The accumulation of microplastics in coastal environments causes both direct and indirect effects on these already vulnerable ecosystems. Limited information was available of the scale of microplastic pollution across New Zealand, including the Bay of Plenty. To enable a greater understanding of microplastic accumulation in sediment and bioaccumulation in bivalves sampling  within the Bay of Plenty area was conducted.
The presence of  microplastic particles was investigated from sediment and shellfish samples collected across the Bay of Plenty, from Waihī Beach in the West, to Ōpōtiki in the East. Three species of shellfish were collected that differed in their functional feeding modes (filter feeder vs deposit feeder): tuangi (cockle: Austrovenus stuchburyi), hanikura (wedge shell: Macomona liliana), and tuatua (surf clam: Paphies subtriangulata). Microplastic particles from sediment and bivalves were separated from the sediment and shellfish samples in the laboratory and identified using visual light stereomicroscopy. Microplastic particles were identified and quantified into three categories: fragments, fibres, and films. 
Significant numbers of fibres, as well as some fragments and films were found to be present in the sediment throughout all sampling locations. The highest density of microplastic particles in sediment (up to 11,087.9 per m²) were observed at sites that were closed to municipal sewage outfalls and populated areas, and the lowest densities were observed at Matakana Island (63 particles per m²). Sites in Ōhiwa Harbour showed an average of 504.6 particles per m² at the high tide zone and 477.6 particles per m² at the intertidal zone in the sediment. Ohiwa Harbour showed similar levels of microplastic accumulation in sediment compared to Tauranga Harbour. However, higher levels of microplastic particles were found in the sediment at open coast sites.
All shellfish sampled had at least one microplastic particle found in their tissues. The highest number of microplastics in shellfish were found in the wedge shell (23 particles), with the least from the cockles (1). Statistical analysis reveal that the deep burrowing deposit feeder (Macomona liliana) demonstrated an elevated amount of microplastic particles ingested relative to the shallow burrowing suspension feeding cockle (Austrovenus stutchburyi). A notable amount of microplastic particles were also found at all sampling locations for the culturally important tuatua (Paphies subtriangulata). However, comparing all three bivalve species, the deposit feeding M. liliana, ingested higher amounts than both the A. stutchburyi and P. subtriangulata, which could be related to their different functional feeding modes in the marine environment. This research provides baseline information to assess the extent of microplastic pollution in sediments and the potential for bioaccumulation in bivalve species with differentiated feeding modes and functional roles in the marine environment. 
The problem with microplastics is a global emerging contaminant. Preventing the problem of plastic wastes in New Zealand will require change across all aspects of society, along with policy regulations to mitigate the issue of microplastic pollution.

year: 2021