title: Microplastics in the marine environment: Sediment contaminant and bioaccumulation rates in bivalves within the Bay of Plenty

authors: Lewis, Anita

subjects: Microplastic

abstract: Microplastic pollution is recognised as a significant anthropogenic issue in coastal ecosystems around the world. The accumulation of microplastics in coastal environments causes both direct and indirect effects on these already vulnerable ecosystems. Limited information was available of the scale of microplastic pollution across New Zealand, including the Bay of Plenty. To enable a greater understanding of microplastic accumulation in sediment and bioaccumulation in bivalves sampling  within the Bay of Plenty area was conducted.
The presence of  microplastic particles was investigated from sediment and shellfish samples collected across the Bay of Plenty, from Waihī Beach in the West, to Ōpōtiki in the East. Three species of shellfish were collected that differed in their functional feeding modes (filter feeder vs deposit feeder): tuangi (cockle: Austrovenus stuchburyi), hanikura (wedge shell: Macomona liliana), and tuatua (surf clam: Paphies subtriangulata). Microplastic particles from sediment and bivalves were separated from the sediment and shellfish samples in the laboratory and identified using visual light stereomicroscopy. Microplastic particles were identified and quantified into three categories: fragments, fibres, and films. 
Significant numbers of fibres, as well as some fragments and films were found to be present in the sediment throughout all sampling locations. The highest density of microplastic particles in sediment (up to 11,087.9 per m²) were observed at sites that were closed to municipal sewage outfalls and populated areas, and the lowest densities were observed at Matakana Island (63 particles per m²). Sites in Ōhiwa Harbour showed an average of 504.6 particles per m² at the high tide zone and 477.6 particles per m² at the intertidal zone in the sediment. Ohiwa Harbour showed similar levels of microplastic accumulation in sediment compared to Tauranga Harbour. However, higher levels of microplastic particles were found in the sediment at open coast sites.
All shellfish sampled had at least one microplastic particle found in their tissues. The highest number of microplastics in shellfish were found in the wedge shell (23 particles), with the least from the cockles (1). Statistical analysis reveal that the deep burrowing deposit feeder (Macomona liliana) demonstrated an elevated amount of microplastic particles ingested relative to the shallow burrowing suspension feeding cockle (Austrovenus stutchburyi). A notable amount of microplastic particles were also found at all sampling locations for the culturally important tuatua (Paphies subtriangulata). However, comparing all three bivalve species, the deposit feeding M. liliana, ingested higher amounts than both the A. stutchburyi and P. subtriangulata, which could be related to their different functional feeding modes in the marine environment. This research provides baseline information to assess the extent of microplastic pollution in sediments and the potential for bioaccumulation in bivalve species with differentiated feeding modes and functional roles in the marine environment. 
The problem with microplastics is a global emerging contaminant. Preventing the problem of plastic wastes in New Zealand will require change across all aspects of society, along with policy regulations to mitigate the issue of microplastic pollution.

text: Microplastics in the marine environment: Sediment contaminant and bioaccumulation rates in bivalves within the Bay of Plenty Microplastic pollution is recognised as a significant anthropogenic issue in coastal ecosystems around the world. The accumulation of microplastics in coastal environments causes both direct and indirect effects on these already vulnerable ecosystems. Limited information was available of the scale of microplastic pollution across New Zealand, including the Bay of Plenty. To enable a greater understanding of microplastic accumulation in sediment and bioaccumulation in bivalves sampling  within the Bay of Plenty area was conducted.
The presence of  microplastic particles was investigated from sediment and shellfish samples collected across the Bay of Plenty, from Waihī Beach in the West, to Ōpōtiki in the East. Three species of shellfish were collected that differed in their functional feeding modes (filter feeder vs deposit feeder): tuangi (cockle: Austrovenus stuchburyi), hanikura (wedge shell: Macomona liliana), and tuatua (surf clam: Paphies subtriangulata). Microplastic particles from sediment and bivalves were separated from the sediment and shellfish samples in the laboratory and identified using visual light stereomicroscopy. Microplastic particles were identified and quantified into three categories: fragments, fibres, and films. 
Significant numbers of fibres, as well as some fragments and films were found to be present in the sediment throughout all sampling locations. The highest density of microplastic particles in sediment (up to 11,087.9 per m²) were observed at sites that were closed to municipal sewage outfalls and populated areas, and the lowest densities were observed at Matakana Island (63 particles per m²). Sites in Ōhiwa Harbour showed an average of 504.6 particles per m² at the high tide zone and 477.6 particles per m² at the intertidal zone in the sediment. Ohiwa Harbour showed similar levels of microplastic accumulation in sediment compared to Tauranga Harbour. However, higher levels of microplastic particles were found in the sediment at open coast sites.
All shellfish sampled had at least one microplastic particle found in their tissues. The highest number of microplastics in shellfish were found in the wedge shell (23 particles), with the least from the cockles (1). Statistical analysis reveal that the deep burrowing deposit feeder (Macomona liliana) demonstrated an elevated amount of microplastic particles ingested relative to the shallow burrowing suspension feeding cockle (Austrovenus stutchburyi). A notable amount of microplastic particles were also found at all sampling locations for the culturally important tuatua (Paphies subtriangulata). However, comparing all three bivalve species, the deposit feeding M. liliana, ingested higher amounts than both the A. stutchburyi and P. subtriangulata, which could be related to their different functional feeding modes in the marine environment. This research provides baseline information to assess the extent of microplastic pollution in sediments and the potential for bioaccumulation in bivalve species with differentiated feeding modes and functional roles in the marine environment. 
The problem with microplastics is a global emerging contaminant. Preventing the problem of plastic wastes in New Zealand will require change across all aspects of society, along with policy regulations to mitigate the issue of microplastic pollution.

year: 2021

title: A brief history of Whakapapa: Māori approaches to genealogy

authors: Mahuika, Nepia

subjects: whakapapa

abstract: Whakapapa is the Māori term for genealogy. It has been described by some as the skeletal structure of Maori epistemology because all things have their own genealogies. In research, whakapapa has been presented in tribal histories, Maori Land Court records, and consistently as a framework for matauranga Māori (Māori knowledge) and Māori research methodologies. This essay offers a brief overview of the ways in which whakapapa has been understood and negotiated in research particularly after the arrival of Europeans. Some early ethnographers, for instance, applied their own genealogical methods of dating to whakapapa, which influenced various Māori approaches from the twentieth century. With the advent of literacy and print, Māori experimented with new ways to record genealogy, and yet the underlying oral, ethical, and cultural practices that are crucial to whakapapa have remained integral to how it still lives and operates in Maori communities today.

text: A brief history of Whakapapa: Māori approaches to genealogy Whakapapa is the Māori term for genealogy. It has been described by some as the skeletal structure of Maori epistemology because all things have their own genealogies. In research, whakapapa has been presented in tribal histories, Maori Land Court records, and consistently as a framework for matauranga Māori (Māori knowledge) and Māori research methodologies. This essay offers a brief overview of the ways in which whakapapa has been understood and negotiated in research particularly after the arrival of Europeans. Some early ethnographers, for instance, applied their own genealogical methods of dating to whakapapa, which influenced various Māori approaches from the twentieth century. With the advent of literacy and print, Māori experimented with new ways to record genealogy, and yet the underlying oral, ethical, and cultural practices that are crucial to whakapapa have remained integral to how it still lives and operates in Maori communities today.

year: 2019

title: Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests

authors: Pochon, Xavier

abstract: Most surveillance programmes for marine invasive species (MIS) require considerable taxonomic expertise, are laborious, and are unable to identify species at larval or juvenile stages. Therefore, marine pests may go undetected at the initial stages of incursions when population densities are low. In this study, we evaluated the ability of the benchtop GS Junior™ 454 pyrosequencing system to detect the presence of MIS in complex sample matrices. An initial in-silico evaluation of the mitochondrial cytochrome c oxidase subunit I (COI) and the nuclear small subunit ribosomal DNA (SSU) genes, found that multiple primer sets (targeting a ca. 400 base pair region) would be required to obtain species level identification within the COI gene. In contrast a single universal primer set was designed to target the V1–V3 region of SSU, allowing simultaneous PCR amplification of a wide taxonomic range of MIS. To evaluate the limits of detection of this method, artificial contrived communities (10 species from 5 taxonomic groups) were created using varying concentrations of known DNA samples and PCR products. Environmental samples (water and sediment) spiked with one or five 160 hr old Asterias amurensis larvae were also examined. Pyrosequencing was able to recover DNA/PCR products of individual species present at greater than 0.64% abundance from all tested contrived communities. Additionally, single A. amurensis larvae were detected from both water and sediment samples despite the co-occurrence of a large array of environmental eukaryotes, indicating an equivalent sensitivity to quantitative PCR. NGS technology has tremendous potential for the early detection of marine invasive species worldwide.

text: Evaluating detection limits of next-generation sequencing for the surveillance and monitoring of international marine pests Most surveillance programmes for marine invasive species (MIS) require considerable taxonomic expertise, are laborious, and are unable to identify species at larval or juvenile stages. Therefore, marine pests may go undetected at the initial stages of incursions when population densities are low. In this study, we evaluated the ability of the benchtop GS Junior™ 454 pyrosequencing system to detect the presence of MIS in complex sample matrices. An initial in-silico evaluation of the mitochondrial cytochrome c oxidase subunit I (COI) and the nuclear small subunit ribosomal DNA (SSU) genes, found that multiple primer sets (targeting a ca. 400 base pair region) would be required to obtain species level identification within the COI gene. In contrast a single universal primer set was designed to target the V1–V3 region of SSU, allowing simultaneous PCR amplification of a wide taxonomic range of MIS. To evaluate the limits of detection of this method, artificial contrived communities (10 species from 5 taxonomic groups) were created using varying concentrations of known DNA samples and PCR products. Environmental samples (water and sediment) spiked with one or five 160 hr old Asterias amurensis larvae were also examined. Pyrosequencing was able to recover DNA/PCR products of individual species present at greater than 0.64% abundance from all tested contrived communities. Additionally, single A. amurensis larvae were detected from both water and sediment samples despite the co-occurrence of a large array of environmental eukaryotes, indicating an equivalent sensitivity to quantitative PCR. NGS technology has tremendous potential for the early detection of marine invasive species worldwide.

year: 2013