title: All for one and one for all: reconciling research and production values at the HathiTrust through user-scripting

authors: Bainbridge, David

subjects: computer science

abstract: This article details a practical technique that safely reconciles the production stability and integrity of the HathiTrust Digital Library (HTDL) with the riskier and potentially disruptive experimental functionalities created by the HathiTrust Research Center. Web systems produced by HTRC are necessarily more speculative and, understandably, operate on equipment outside of the HTDL production environment. The key to our approach that brings these two parts closer together is to exploit user-scripting: a web browser add-in technique that allows users to introduce bespoke Javascript code that alters the behavior of specific website(s). We demonstrate how it can be used to provide a mashup of three web sites: HTDL and two web-based offerings operated independently by HTRC. The end result is that the user interacts with the HTDL as usual, and at strategic locations in the interface additionally functionality drawn from the research systems-which takes account of the user's current context-is seamlessly blended in.

text: All for one and one for all: reconciling research and production values at the HathiTrust through user-scripting This article details a practical technique that safely reconciles the production stability and integrity of the HathiTrust Digital Library (HTDL) with the riskier and potentially disruptive experimental functionalities created by the HathiTrust Research Center. Web systems produced by HTRC are necessarily more speculative and, understandably, operate on equipment outside of the HTDL production environment. The key to our approach that brings these two parts closer together is to exploit user-scripting: a web browser add-in technique that allows users to introduce bespoke Javascript code that alters the behavior of specific website(s). We demonstrate how it can be used to provide a mashup of three web sites: HTDL and two web-based offerings operated independently by HTRC. The end result is that the user interacts with the HTDL as usual, and at strategic locations in the interface additionally functionality drawn from the research systems-which takes account of the user's current context-is seamlessly blended in.

year: 2017

title: Functional trait variation along a hydrological gradient and trait-based predictions of the composition of a wetland plant community

authors: Purcell, Adam

subjects: functional trait

abstract: Predicting the assembly of plant communities is considered the Holy Grail of functional ecology and has never been more important as we head into an era of environmental change. Studying plant functional traits provides the best opportunity for understanding the community assembly processes that determine the abundance and distribution of plant species. Plant functional traits provide information on the direct physiological adaptations of plants to various environmental conditions. The assembly of plant communities is driven by filtering processes that select for or against certain functional traits and a plant can only be present within a community if it contains the functional traits necessary to germinate, survive and compete in the environment of the community. An understanding of how functional traits are filtered by the environment and biotic interactions provides the foundations for predictive community assembly models. However, the understanding of how functional traits are filtered along hydrological gradients is poor for the majority of functional traits. 
In this thesis I aimed to identify how plant functional traits respond to variation in soil hydrology in the presence and absence of grazing and determine whether a trait-based model of environmental filtering could predict the composition of an ephemeral wetland plant community. To achieve these aims, I performed a survey of the plant community in an ephemeral wetland in grazed and ungrazed transects. The survey was conducted along a hydrological gradient that was split into an elevation gradient above the flood line and a flooding gradient below the flood line. I measured nine root, leaf and shoot traits on 885 plant samples collected during the community survey and investigated the response of community-weighted and individual-level traits along the hydrological gradient using Generalized Additive Models (GAMs) and Generalized Linear Models (GLMs). To determine whether a trait-based model of environmental filtering could predict the composition of the plant community, I incorporated the individual-level trait relationships into a community assembly model known as Traitspace and predicted the relative abundance of the 23 most common species found within the Kettlehole.
Community-weighted root traits were more strongly related to the hydrological gradient than aboveground traits. Root aerenchyma increased as the number of days submerged increased while root dry matter content (RDMC), specific root length (SRL), root tissue density (RTD) and root branching intensity (RBI) decreased with increasing flooding. Community-weighted specific leaf area (SLA) and root tissue density were more closely related to the elevation gradient than any other traits. SLA decreased as elevation above the flood line increased while RTD increased with elevation. The relationships between individual-level traits and the elevation and flooding gradients were far weaker than community-weighted traits but showed similar trends in the directions of trait responses along the gradients. Grazing reduced the community-weighted trait values of all traits except SLA and aboveground dry matter content (AGDMC) along the flooding gradient and had little effect on the trait values observed along the elevation gradient.
Using environmental filtering of functional traits, the Traitspace model was able to predict the distribution and abundance of a number of key species within the wetland plant community but was unable to accurately predict the abundance and distribution of other species. The accuracy of the Traitspace model was best when all nine functional traits were used to produce predictions of species abundances but SLA and height were recognised as the two traits to provide the most predictive ability.
The strong filtering of root traits illustrate the important information that root traits provide in terms of the adaptations of plants in environments with varied soil hydrology. Easily measurable aboveground traits are often favoured in functional ecology but these results highlight the importance of measuring root traits in trait-based research. Traitspace has the ability to predict the abundance and distribution of some species within a wetland plant community using environmental filtering of functional traits. Community assembly at small spatial scales is mostly driven by biotic interactions rather than environmental filtering which may limit the power of current predictive models. The inclusion of biotic interactions into trait-based models will improve the predictions of community composition at small spatial scales in wetland ecosystems and help us to progress towards achieving the goal of accurately predicting the composition of plant communities.

text: Functional trait variation along a hydrological gradient and trait-based predictions of the composition of a wetland plant community Predicting the assembly of plant communities is considered the Holy Grail of functional ecology and has never been more important as we head into an era of environmental change. Studying plant functional traits provides the best opportunity for understanding the community assembly processes that determine the abundance and distribution of plant species. Plant functional traits provide information on the direct physiological adaptations of plants to various environmental conditions. The assembly of plant communities is driven by filtering processes that select for or against certain functional traits and a plant can only be present within a community if it contains the functional traits necessary to germinate, survive and compete in the environment of the community. An understanding of how functional traits are filtered by the environment and biotic interactions provides the foundations for predictive community assembly models. However, the understanding of how functional traits are filtered along hydrological gradients is poor for the majority of functional traits. 
In this thesis I aimed to identify how plant functional traits respond to variation in soil hydrology in the presence and absence of grazing and determine whether a trait-based model of environmental filtering could predict the composition of an ephemeral wetland plant community. To achieve these aims, I performed a survey of the plant community in an ephemeral wetland in grazed and ungrazed transects. The survey was conducted along a hydrological gradient that was split into an elevation gradient above the flood line and a flooding gradient below the flood line. I measured nine root, leaf and shoot traits on 885 plant samples collected during the community survey and investigated the response of community-weighted and individual-level traits along the hydrological gradient using Generalized Additive Models (GAMs) and Generalized Linear Models (GLMs). To determine whether a trait-based model of environmental filtering could predict the composition of the plant community, I incorporated the individual-level trait relationships into a community assembly model known as Traitspace and predicted the relative abundance of the 23 most common species found within the Kettlehole.
Community-weighted root traits were more strongly related to the hydrological gradient than aboveground traits. Root aerenchyma increased as the number of days submerged increased while root dry matter content (RDMC), specific root length (SRL), root tissue density (RTD) and root branching intensity (RBI) decreased with increasing flooding. Community-weighted specific leaf area (SLA) and root tissue density were more closely related to the elevation gradient than any other traits. SLA decreased as elevation above the flood line increased while RTD increased with elevation. The relationships between individual-level traits and the elevation and flooding gradients were far weaker than community-weighted traits but showed similar trends in the directions of trait responses along the gradients. Grazing reduced the community-weighted trait values of all traits except SLA and aboveground dry matter content (AGDMC) along the flooding gradient and had little effect on the trait values observed along the elevation gradient.
Using environmental filtering of functional traits, the Traitspace model was able to predict the distribution and abundance of a number of key species within the wetland plant community but was unable to accurately predict the abundance and distribution of other species. The accuracy of the Traitspace model was best when all nine functional traits were used to produce predictions of species abundances but SLA and height were recognised as the two traits to provide the most predictive ability.
The strong filtering of root traits illustrate the important information that root traits provide in terms of the adaptations of plants in environments with varied soil hydrology. Easily measurable aboveground traits are often favoured in functional ecology but these results highlight the importance of measuring root traits in trait-based research. Traitspace has the ability to predict the abundance and distribution of some species within a wetland plant community using environmental filtering of functional traits. Community assembly at small spatial scales is mostly driven by biotic interactions rather than environmental filtering which may limit the power of current predictive models. The inclusion of biotic interactions into trait-based models will improve the predictions of community composition at small spatial scales in wetland ecosystems and help us to progress towards achieving the goal of accurately predicting the composition of plant communities.

year: 2016

title: Upsetting Geographies: Sacred Spaces of Matata

authors: Brown, Keri Aroha Michelle

subjects: sacred

abstract: My research focuses on the emotional experience of the unearthing of ancestral bones for local Māori of Matata. The coastal town of Matata in the Eastern Bay of Plenty provides a central case study location as it is a town that is facing the pressure of coastal residential development as well the added strain of dealing with the 2005 flood which has compounded issues over local waahi tapu.  Local iwi have continued to actively advocate for the protection of these sites especially with regard to the ongoing discovery of ancestral bones.

Cultural and emotional geographies provide the theoretical framework for this research. This framework has been particularly useful as it encourages reflexive commentary and alternative ways of approaching and thinking about, and understanding knowledge. I have incorporated the research paradigm of kaupapa Māori which complements my theoretical framework by producing a research design that is organised and shaped according to tikanga Māori while (in) advertently critiquing and challenging traditional ways of conducting research. The overall aim is to explore the current issues surrounding the discovery of ancestral bones through korero with local iwi members. It is through their perspectives, stories, beliefs and opinions that provide a better understanding of the meanings attributed to waahi tapu and the influence of certain events such as the 2005 flood. I examine, critically the relationship between power, sacred sites, bones and the body. 

It is from these objectives that I contribute to an area of scholarship that has been largely left out from geographical enquiry. I suggest that the importance of sacredness and spirituality has been relatively overlooked as an influential factor in people's perceptions of the world around them. This thesis is intended to demonstrate the value of indigenous perspectives of bones, the body and sacredness as a way of better understanding some of the complexities that can arise when cross-cultural approaches collide in environmental planning.  

There are three main themes that have emerged from this research. The first theme has to do with competing knowledges. To Māori, the location and knowledge of ancestral bones is culturally important and is in its self sacred, therefore certain tikanga is applied as a means of a protection mechanism. However this ideologically clashes with traditional scientific western approaches which are privileged over other alternative ways of understanding knowledge, in this case Māori knowledge. The second related theme concerns the process of boundary making and cross-cultural ways of perceiving 'sacred' and 'everyday' spaces. To better understand these perspectives involves acknowledging the embodied and emotional experience of wāhi tapu to Māori, and the active role of kaitiaki in the protection and careful management of these culturally important spaces.

text: Upsetting Geographies: Sacred Spaces of Matata My research focuses on the emotional experience of the unearthing of ancestral bones for local Māori of Matata. The coastal town of Matata in the Eastern Bay of Plenty provides a central case study location as it is a town that is facing the pressure of coastal residential development as well the added strain of dealing with the 2005 flood which has compounded issues over local waahi tapu.  Local iwi have continued to actively advocate for the protection of these sites especially with regard to the ongoing discovery of ancestral bones.

Cultural and emotional geographies provide the theoretical framework for this research. This framework has been particularly useful as it encourages reflexive commentary and alternative ways of approaching and thinking about, and understanding knowledge. I have incorporated the research paradigm of kaupapa Māori which complements my theoretical framework by producing a research design that is organised and shaped according to tikanga Māori while (in) advertently critiquing and challenging traditional ways of conducting research. The overall aim is to explore the current issues surrounding the discovery of ancestral bones through korero with local iwi members. It is through their perspectives, stories, beliefs and opinions that provide a better understanding of the meanings attributed to waahi tapu and the influence of certain events such as the 2005 flood. I examine, critically the relationship between power, sacred sites, bones and the body. 

It is from these objectives that I contribute to an area of scholarship that has been largely left out from geographical enquiry. I suggest that the importance of sacredness and spirituality has been relatively overlooked as an influential factor in people's perceptions of the world around them. This thesis is intended to demonstrate the value of indigenous perspectives of bones, the body and sacredness as a way of better understanding some of the complexities that can arise when cross-cultural approaches collide in environmental planning.  

There are three main themes that have emerged from this research. The first theme has to do with competing knowledges. To Māori, the location and knowledge of ancestral bones is culturally important and is in its self sacred, therefore certain tikanga is applied as a means of a protection mechanism. However this ideologically clashes with traditional scientific western approaches which are privileged over other alternative ways of understanding knowledge, in this case Māori knowledge. The second related theme concerns the process of boundary making and cross-cultural ways of perceiving 'sacred' and 'everyday' spaces. To better understand these perspectives involves acknowledging the embodied and emotional experience of wāhi tapu to Māori, and the active role of kaitiaki in the protection and careful management of these culturally important spaces.

year: 2008