title: Variable detectability in long-term population surveys of small mammals

authors: Watkins, Alison Fern

subjects: abundance

abstract: Simple survey methods for small mammals, such as indices of trap captures per unit effort, are often the only practicable means of monitoring populations over the long term and at landscape scale and the only source of valuable historical data. They include two fundamental assumptions about the target populations (uniform distribution and equal detectability). Concern has often been expressed that, if these assumptions are violated, conventional density indices could give misleading results. Site occupancy analysis (SOA) can detect significantly uneven distribution of local populations (from variation in probability of occupancy) and reliability of indices of abundance (from variation in detectability) without requiring enumeration. We use this method to examine standardised capture records from long-term population surveys of non-commensal house mice (Mus musculus), ship rats (Rattus rattus), Norway rats (Rattus norvegicus) and stoats (Mustela erminea), sampled in four representative temperate forest habitats in New Zealand. Best fit models generated by SOA were consistent with (1) constant or random probability of occupancy for stoats and dynamic equilibrium probability of occupancy for most populations of mice and rats; (2) widespread site-specific variation in probability of detection, especially substantial in rats and correlated with habitat covariates; (3) direct correlations between detectability and density index in mice and rats sampled at 50 m intervals over 3 days, probably because the effects on the density index of variation in numbers available to be caught (population size) were much larger than the effects of changes in catchability (individual behaviour); (4) declines after 6 days in detectability of stoats and rats sampled at 3–400 m intervals over 10 days, attributed to a local trap-out effect. Longer-term variations in the density index were consistent with observed changes in reproductive parameters and age structure that are known to follow variations in real numbers. We conclude that violations of the assumptions of uniform distribution and equal detectability, while real, were not sufficient to prevent these data from providing information adequate for (1) short-term population assessments (2) long-term, low-level monitoring and (3) preliminary modelling.

text: Variable detectability in long-term population surveys of small mammals Simple survey methods for small mammals, such as indices of trap captures per unit effort, are often the only practicable means of monitoring populations over the long term and at landscape scale and the only source of valuable historical data. They include two fundamental assumptions about the target populations (uniform distribution and equal detectability). Concern has often been expressed that, if these assumptions are violated, conventional density indices could give misleading results. Site occupancy analysis (SOA) can detect significantly uneven distribution of local populations (from variation in probability of occupancy) and reliability of indices of abundance (from variation in detectability) without requiring enumeration. We use this method to examine standardised capture records from long-term population surveys of non-commensal house mice (Mus musculus), ship rats (Rattus rattus), Norway rats (Rattus norvegicus) and stoats (Mustela erminea), sampled in four representative temperate forest habitats in New Zealand. Best fit models generated by SOA were consistent with (1) constant or random probability of occupancy for stoats and dynamic equilibrium probability of occupancy for most populations of mice and rats; (2) widespread site-specific variation in probability of detection, especially substantial in rats and correlated with habitat covariates; (3) direct correlations between detectability and density index in mice and rats sampled at 50 m intervals over 3 days, probably because the effects on the density index of variation in numbers available to be caught (population size) were much larger than the effects of changes in catchability (individual behaviour); (4) declines after 6 days in detectability of stoats and rats sampled at 3–400 m intervals over 10 days, attributed to a local trap-out effect. Longer-term variations in the density index were consistent with observed changes in reproductive parameters and age structure that are known to follow variations in real numbers. We conclude that violations of the assumptions of uniform distribution and equal detectability, while real, were not sufficient to prevent these data from providing information adequate for (1) short-term population assessments (2) long-term, low-level monitoring and (3) preliminary modelling.

year: 2009

title: The role of tectonism in sequence development and facies distribution of Upper Oligocene cool-water carbonates: Coromandel Peninsula, New Zealand

authors: Dix, George R.

subjects: cool-water carbonates

abstract: The Torehina Formation is part of a cool-water carbonate succession of Oligocene age in New Zealand that crops out on the Coromandel Peninsula, North Island. It contains two major transgressive sequences that record successive onlap of a once emergent landmass. The first sequence records marine flooding of non-marine to marginal marine fan delta/estuarine facies, followed by deepening upward and formation of a low-energy, deep (100+ m) muddy carbonate ramp. The capping sequence boundary is characterized by differential uplift and varies considerably in its character over a small (9 km2) area, varying from a burrowed glauconitic firmground to an erosional hardground to an undulatory marine contact to a palaeokarst with < 25 m relief. Sequence 2 sediments, which overlie the palaeokarst with minor (< 10°) angular unconformity, are clayey, marine (offshore) siltstones, whereas open-marine limestones of equivalent age overlie the other boundary types with no apparent angular discordance. The siliciclastics could either represent lowstand channel deposits or may define interbank deposits contemporary with adjacent carbonates. Palaeogeographic restriction of palaeokarst and sequence 2 siliciclastics identifies a structural corridor oriented strike-parallel to the adjacent Harauki Graben, which began to develop by this time. Palaeogeographical differences in the character of the basal limestone facies of sequence 2 also occur. These differences identify variation in accommodation during initial stages of deposition imposed by previous differential movement of fault blocks. As a result, relatively warm-water (20 °C) Amphistegina-bearing limestones in one area contrast with co-existing deeper water, silty foraminiferal (benthic > planktic), echinoderm and bivalve limestones in another. This variation disappears upsection, which suggests that initial bathymetric differences were eliminated with renewed rise in sea level, yielding deeper water inner-shelf sediment facies followed by the accumulation of still deeper, but higher energy, outer-shelf bivalve and bryozoan facies. The sequence architecture of the Torehina Formation is controlled by tectonism, both long-term subsidence and short-term differential uplift. This arose as a result of increasing tectonic activity throughout proto-New Zealand during the Late Oligocene. In such a system, local and regional variation in tectonism among adjacent basins can impose subtle to marked differences in the timing of sequence boundaries and the character of basin-fill patterns.

text: The role of tectonism in sequence development and facies distribution of Upper Oligocene cool-water carbonates: Coromandel Peninsula, New Zealand The Torehina Formation is part of a cool-water carbonate succession of Oligocene age in New Zealand that crops out on the Coromandel Peninsula, North Island. It contains two major transgressive sequences that record successive onlap of a once emergent landmass. The first sequence records marine flooding of non-marine to marginal marine fan delta/estuarine facies, followed by deepening upward and formation of a low-energy, deep (100+ m) muddy carbonate ramp. The capping sequence boundary is characterized by differential uplift and varies considerably in its character over a small (9 km2) area, varying from a burrowed glauconitic firmground to an erosional hardground to an undulatory marine contact to a palaeokarst with < 25 m relief. Sequence 2 sediments, which overlie the palaeokarst with minor (< 10°) angular unconformity, are clayey, marine (offshore) siltstones, whereas open-marine limestones of equivalent age overlie the other boundary types with no apparent angular discordance. The siliciclastics could either represent lowstand channel deposits or may define interbank deposits contemporary with adjacent carbonates. Palaeogeographic restriction of palaeokarst and sequence 2 siliciclastics identifies a structural corridor oriented strike-parallel to the adjacent Harauki Graben, which began to develop by this time. Palaeogeographical differences in the character of the basal limestone facies of sequence 2 also occur. These differences identify variation in accommodation during initial stages of deposition imposed by previous differential movement of fault blocks. As a result, relatively warm-water (20 °C) Amphistegina-bearing limestones in one area contrast with co-existing deeper water, silty foraminiferal (benthic > planktic), echinoderm and bivalve limestones in another. This variation disappears upsection, which suggests that initial bathymetric differences were eliminated with renewed rise in sea level, yielding deeper water inner-shelf sediment facies followed by the accumulation of still deeper, but higher energy, outer-shelf bivalve and bryozoan facies. The sequence architecture of the Torehina Formation is controlled by tectonism, both long-term subsidence and short-term differential uplift. This arose as a result of increasing tectonic activity throughout proto-New Zealand during the Late Oligocene. In such a system, local and regional variation in tectonism among adjacent basins can impose subtle to marked differences in the timing of sequence boundaries and the character of basin-fill patterns.

year: 2004

title: PIWeCS: enhancing human/machine agency in an interactive composition system

authors: Whalley, Ian

abstract: This paper focuses on the infrastructure and aesthetic approach used in PIWeCS: a Public Space Interactive Web-based Composition System. The concern was to increase the sense of dialogue between human and machine agency in an interactive work by adapting Paine's (2002) notion of a conversational model of interaction as a ‘complex system’. The machine implementation of PIWeCS is achieved through integrating intelligent agent programming with MAX/MSP. Human input is through a web infrastructure. The conversation is initiated and continued by participants through arrangements and composition based on short performed samples of traditional New Zealand Maori instruments. The system allows the extension of a composition through the electroacoustic manipulation of the source material.

text: PIWeCS: enhancing human/machine agency in an interactive composition system This paper focuses on the infrastructure and aesthetic approach used in PIWeCS: a Public Space Interactive Web-based Composition System. The concern was to increase the sense of dialogue between human and machine agency in an interactive work by adapting Paine's (2002) notion of a conversational model of interaction as a ‘complex system’. The machine implementation of PIWeCS is achieved through integrating intelligent agent programming with MAX/MSP. Human input is through a web infrastructure. The conversation is initiated and continued by participants through arrangements and composition based on short performed samples of traditional New Zealand Maori instruments. The system allows the extension of a composition through the electroacoustic manipulation of the source material.

year: 2004