title: Global Diversity of Desert Hypolithic Cyanobacteria

authors: Lacap-Bugler, Donnabella C.

subjects: Science & Technology

abstract: Global patterns in diversity were estimated for cyanobacteria-dominated hypolithic communities that colonize ventral surfaces of quartz stones and are common in desert environments. A total of 64 hypolithic communities were recovered from deserts on every continent plus a tropical moisture sufficient location. Community diversity was estimated using a combined t-RFLP fingerprinting and high throughput sequencing approach. The t-RFLP analysis revealed desert communities were different from the single non-desert location. A striking pattern also emerged where Antarctic desert communities were clearly distinct from all other deserts. Some overlap in community similarity occurred for hot, cold and tundra deserts. A further observation was that the producer-consumer ratio displayed a significant negative correlation with growing season, such that shorter growing seasons supported communities with greater abundance of producers, and this pattern was independent of macroclimate. High-throughput sequencing of 16S rRNA and nifH genes from four representative samples validated the t-RFLP study and revealed patterns of taxonomic and putative diazotrophic diversity for desert communities from the Taklimakan Desert, Tibetan Plateau, Canadian Arctic and Antarctic. All communities were dominated by cyanobacteria and among these 21 taxa were potentially endemic to any given desert location. Some others occurred in all but the most extreme hot and polar deserts suggesting they were relatively less well adapted to environmental stress. The t-RFLP and sequencing data revealed the two most abundant cyanobacterial taxa were Phormidium in Antarctic and Tibetan deserts and Chroococcidiopsis in hot and cold deserts. The Arctic tundra displayed a more heterogenous cyanobacterial assemblage and this was attributed to the maritime-influenced sampling location. The most abundant heterotrophic taxa were ubiquitous among samples and belonged to the Acidobacteria, Actinobacteria, Bacteroidetes, and Proteobacteria. Sequencing using nitrogenase gene-specific primers revealed all putative diazotrophs were Proteobacteria of the orders Burkholderiales, Rhizobiales, and Rhodospirillales. We envisage cyanobacterial carbon input to the system is accompanied by nitrogen fixation largely from non-cyanobacterial taxa. Overall the results indicate desert hypoliths worldwide are dominated by cyanobacteria and that growing season is a useful predictor of their abundance. Differences in cyanobacterial taxa encountered may reflect their adaptation to different moisture availability regimes in polar and non-polar deserts.

text: Global Diversity of Desert Hypolithic Cyanobacteria Global patterns in diversity were estimated for cyanobacteria-dominated hypolithic communities that colonize ventral surfaces of quartz stones and are common in desert environments. A total of 64 hypolithic communities were recovered from deserts on every continent plus a tropical moisture sufficient location. Community diversity was estimated using a combined t-RFLP fingerprinting and high throughput sequencing approach. The t-RFLP analysis revealed desert communities were different from the single non-desert location. A striking pattern also emerged where Antarctic desert communities were clearly distinct from all other deserts. Some overlap in community similarity occurred for hot, cold and tundra deserts. A further observation was that the producer-consumer ratio displayed a significant negative correlation with growing season, such that shorter growing seasons supported communities with greater abundance of producers, and this pattern was independent of macroclimate. High-throughput sequencing of 16S rRNA and nifH genes from four representative samples validated the t-RFLP study and revealed patterns of taxonomic and putative diazotrophic diversity for desert communities from the Taklimakan Desert, Tibetan Plateau, Canadian Arctic and Antarctic. All communities were dominated by cyanobacteria and among these 21 taxa were potentially endemic to any given desert location. Some others occurred in all but the most extreme hot and polar deserts suggesting they were relatively less well adapted to environmental stress. The t-RFLP and sequencing data revealed the two most abundant cyanobacterial taxa were Phormidium in Antarctic and Tibetan deserts and Chroococcidiopsis in hot and cold deserts. The Arctic tundra displayed a more heterogenous cyanobacterial assemblage and this was attributed to the maritime-influenced sampling location. The most abundant heterotrophic taxa were ubiquitous among samples and belonged to the Acidobacteria, Actinobacteria, Bacteroidetes, and Proteobacteria. Sequencing using nitrogenase gene-specific primers revealed all putative diazotrophs were Proteobacteria of the orders Burkholderiales, Rhizobiales, and Rhodospirillales. We envisage cyanobacterial carbon input to the system is accompanied by nitrogen fixation largely from non-cyanobacterial taxa. Overall the results indicate desert hypoliths worldwide are dominated by cyanobacteria and that growing season is a useful predictor of their abundance. Differences in cyanobacterial taxa encountered may reflect their adaptation to different moisture availability regimes in polar and non-polar deserts.

year: 2017

title: Living a useful life: Physically disabled children in New Zealand 1935 - 1980s

authors: Pooley, Emma

abstract: This dissertation examines the history of physically disabled children in New Zealand between 1935 and the mid 1980s. It is designed to provide an insight into a dimension of history that has been missing from mainstream histories. It examines official and popular attitudes towards disabled people and the changes to these over the period discussed here.
Using a range of primary and secondary materials, this study indicates the ways the notion of 'social utility' has given way to discussions about equality with regards to the role of disabled children in New Zealand society. The dissertation introduces ideas and theories about the study of disability in a general sense and applies them in a New Zealand context. It also introduces ideas about childhood and applies these to disabled children in New Zealand. This dissertation explores events that have been pivotal in the study of disability, for example, the emergence of the Crippled Children Society (later CCS) and changes in the fields of rehabilitation and special education. Events such as the beginning of Social Security are discussed in the light of their impact upon childhood disability.
Other developments in the health sector such as the increase in orthopaedic practice have had an impact upon the lives of disabled children. This dissertation explores the relationship between the field of Orthopaedics and the Crippled Children Society which was the main agency providing for the needs of disabled children. A further area that is explored is the influence of visiting specialist Dr Earl Carlson as well as parental guides upon the treatment of disabled children. The final section looks at the changes in special education including ideas about inclusion and mainstreaming. It discusses the notion that education changed from a focus on utility to one of equality. It also explores the role of the family with regards to education.

text: Living a useful life: Physically disabled children in New Zealand 1935 - 1980s This dissertation examines the history of physically disabled children in New Zealand between 1935 and the mid 1980s. It is designed to provide an insight into a dimension of history that has been missing from mainstream histories. It examines official and popular attitudes towards disabled people and the changes to these over the period discussed here.
Using a range of primary and secondary materials, this study indicates the ways the notion of 'social utility' has given way to discussions about equality with regards to the role of disabled children in New Zealand society. The dissertation introduces ideas and theories about the study of disability in a general sense and applies them in a New Zealand context. It also introduces ideas about childhood and applies these to disabled children in New Zealand. This dissertation explores events that have been pivotal in the study of disability, for example, the emergence of the Crippled Children Society (later CCS) and changes in the fields of rehabilitation and special education. Events such as the beginning of Social Security are discussed in the light of their impact upon childhood disability.
Other developments in the health sector such as the increase in orthopaedic practice have had an impact upon the lives of disabled children. This dissertation explores the relationship between the field of Orthopaedics and the Crippled Children Society which was the main agency providing for the needs of disabled children. A further area that is explored is the influence of visiting specialist Dr Earl Carlson as well as parental guides upon the treatment of disabled children. The final section looks at the changes in special education including ideas about inclusion and mainstreaming. It discusses the notion that education changed from a focus on utility to one of equality. It also explores the role of the family with regards to education.

year: 2001

title: Outcomes in different ethnic groups of New Zealand patients with screen-detected vs. non-screen-detected breast cancer.

authors: Lawrenson, Ross

subjects: Breast screening

abstract: OBJECTIVE: To compare characteristics and survival of New Zealand European, Māori, and Pacific women with screen-detected vs. non-screen-detected breast cancer. 
METHODS: Women aged 45-69 diagnosed with invasive breast cancer between January 2005 and May 2013 were identified from the Waikato and Auckland Breast Cancer Registries. Patient demographics and tumour characteristics were described by detection mode and ethnicity. Kaplan-Meier method was used to estimate the five-year breast cancer-specific survival of women with stage I-III breast cancer by ethnicity and detection mode. 
RESULTS: Women with screen-detected cancers were older, had smaller tumours, fewer stage IV (0.8% vs. 7.6%), fewer high grade (16.8% vs. 39.0%), and fewer lymph node positive diseases (26.3% vs. 51.5%) than women with non-screen-detected cancers. There were more Luminal A (70.0% vs. 54.0%), fewer human epidermal growth factor receptor 2 positive non-Luminal (4.4% vs. 8.8%), and fewer triple negative cases (7.0% vs. 13.8%) in screen-detected than non-screen-detected cancers. If not screen detected, 22.7% of breast cancers in Pacific women were stage IV compared with 2.4% if screen detected. If not screen detected, the five-year breast cancer-specific survival was 91.1% for New Zealand European women, 84.2% for Māori women, and 80.2% for Pacific women (p-value <0.001). For screen-detected breast cancer, survival between different ethnic groups was similar.
CONCLUSIONS: Breast cancers detected through screening are diagnosed at an earlier stage and have a greater proportion of subtypes, with better outcome. Variations in survival for Māori and Pacific women are only found in women with non-screen-detected breast cancer.

text: Outcomes in different ethnic groups of New Zealand patients with screen-detected vs. non-screen-detected breast cancer. OBJECTIVE: To compare characteristics and survival of New Zealand European, Māori, and Pacific women with screen-detected vs. non-screen-detected breast cancer. 
METHODS: Women aged 45-69 diagnosed with invasive breast cancer between January 2005 and May 2013 were identified from the Waikato and Auckland Breast Cancer Registries. Patient demographics and tumour characteristics were described by detection mode and ethnicity. Kaplan-Meier method was used to estimate the five-year breast cancer-specific survival of women with stage I-III breast cancer by ethnicity and detection mode. 
RESULTS: Women with screen-detected cancers were older, had smaller tumours, fewer stage IV (0.8% vs. 7.6%), fewer high grade (16.8% vs. 39.0%), and fewer lymph node positive diseases (26.3% vs. 51.5%) than women with non-screen-detected cancers. There were more Luminal A (70.0% vs. 54.0%), fewer human epidermal growth factor receptor 2 positive non-Luminal (4.4% vs. 8.8%), and fewer triple negative cases (7.0% vs. 13.8%) in screen-detected than non-screen-detected cancers. If not screen detected, 22.7% of breast cancers in Pacific women were stage IV compared with 2.4% if screen detected. If not screen detected, the five-year breast cancer-specific survival was 91.1% for New Zealand European women, 84.2% for Māori women, and 80.2% for Pacific women (p-value <0.001). For screen-detected breast cancer, survival between different ethnic groups was similar.
CONCLUSIONS: Breast cancers detected through screening are diagnosed at an earlier stage and have a greater proportion of subtypes, with better outcome. Variations in survival for Māori and Pacific women are only found in women with non-screen-detected breast cancer.

year: 2019