title: The Trichoptera barcode initiative: a strategy for generating a species-level Tree of Life

authors: Zhou, Xin

subjects: Science & Technology

abstract: DNA barcoding was intended as a means to provide species-level identifications through associating DNA sequences from unknown specimens to those from curated reference specimens. Although barcodes were not designed for phylogenetics, they can be beneficial to the completion of the Tree of Life. The barcode database for Trichoptera is relatively comprehensive, with data from every family, approximately two-thirds of the genera, and one-third of the described species. Most Trichoptera, as with most of life's species, have never been subjected to any formal phylogenetic analysis. Here, we present a phylogeny with over 16 000 unique haplotypes as a working hypothesis that can be updated as our estimates improve. We suggest a strategy of implementing constrained tree searches, which allow larger datasets to dictate the backbone phylogeny, while the barcode data fill out the tips of the tree. We also discuss how this phylogeny could be used to focus taxonomic attention on ambiguous species boundaries and hidden biodiversity. We suggest that systematists continue to differentiate between ‘Barcode Index Numbers’ (BINs) and ‘species’ that have been formally described. Each has utility, but they are not synonyms. We highlight examples of integrative taxonomy, using both barcodes and morphology for species description.

This article is part of the themed issue ‘From DNA barcodes to biomes’.

text: The Trichoptera barcode initiative: a strategy for generating a species-level Tree of Life DNA barcoding was intended as a means to provide species-level identifications through associating DNA sequences from unknown specimens to those from curated reference specimens. Although barcodes were not designed for phylogenetics, they can be beneficial to the completion of the Tree of Life. The barcode database for Trichoptera is relatively comprehensive, with data from every family, approximately two-thirds of the genera, and one-third of the described species. Most Trichoptera, as with most of life's species, have never been subjected to any formal phylogenetic analysis. Here, we present a phylogeny with over 16 000 unique haplotypes as a working hypothesis that can be updated as our estimates improve. We suggest a strategy of implementing constrained tree searches, which allow larger datasets to dictate the backbone phylogeny, while the barcode data fill out the tips of the tree. We also discuss how this phylogeny could be used to focus taxonomic attention on ambiguous species boundaries and hidden biodiversity. We suggest that systematists continue to differentiate between ‘Barcode Index Numbers’ (BINs) and ‘species’ that have been formally described. Each has utility, but they are not synonyms. We highlight examples of integrative taxonomy, using both barcodes and morphology for species description.

This article is part of the themed issue ‘From DNA barcodes to biomes’.

year: 2016

title: Proof-of-learning: A blockchain consensus mechanism based on machine learning competitions

authors: Bravo-Marquez, Felipe

abstract: This article presents WekaCoin, a peer-to-peer cryptocurrency based on a new distributed consensus protocol called Proof-of-Learning. Proof-of-learning achieves distributed consensus by ranking machine learning systems for a given task. The aim of this protocol is to alleviate the computational waste involved in hashing-based puzzles and to create a public distributed and verifiable database of state-of-the-art machine learning models and experiments.

text: Proof-of-learning: A blockchain consensus mechanism based on machine learning competitions This article presents WekaCoin, a peer-to-peer cryptocurrency based on a new distributed consensus protocol called Proof-of-Learning. Proof-of-learning achieves distributed consensus by ranking machine learning systems for a given task. The aim of this protocol is to alleviate the computational waste involved in hashing-based puzzles and to create a public distributed and verifiable database of state-of-the-art machine learning models and experiments.

year: 2019

title: /u/ fronting and /t/ aspiration in Māori and New Zealand English

authors: Maclagan, Margaret

subjects: Maori

abstract: This article examines the relationship between the frontness of /u/ and the aspiration of /t/ in both Māori and New Zealand English (NZE). In both languages, these processes can be observed since the earliest recordings dating from the latter part of the nineteenth century. We report analyses of these developments for three groups of male speakers of Māori spanning the twentieth century. We compare the Māori analyses with analyses of related features of the speakers' English and of the English of monolingual contemporaries. The occurrence of these processes in Māori cannot be seen simply as interference from NZE as the Māori-speaking population became increasingly bilingual. We conclude that it was the arrival of English with its contrast between aspirated and unaspirated plosives, rather than direct borrowing, that was the trigger for the fronting of the hitherto stable back Māori /u/ vowel together with increased aspiration of /t/ before both /i/ and /u/.

text: /u/ fronting and /t/ aspiration in Māori and New Zealand English This article examines the relationship between the frontness of /u/ and the aspiration of /t/ in both Māori and New Zealand English (NZE). In both languages, these processes can be observed since the earliest recordings dating from the latter part of the nineteenth century. We report analyses of these developments for three groups of male speakers of Māori spanning the twentieth century. We compare the Māori analyses with analyses of related features of the speakers' English and of the English of monolingual contemporaries. The occurrence of these processes in Māori cannot be seen simply as interference from NZE as the Māori-speaking population became increasingly bilingual. We conclude that it was the arrival of English with its contrast between aspirated and unaspirated plosives, rather than direct borrowing, that was the trigger for the fronting of the hitherto stable back Māori /u/ vowel together with increased aspiration of /t/ before both /i/ and /u/.

year: 2009