title: Pitfalls in benchmarking data stream classification and how to avoid them

authors: Bifet, Albert

subjects: computer science

abstract: Data stream classification plays an important role in modern data analysis, where data arrives in a stream and needs to be mined in real time. In the data stream setting the underlying distribution from which this data comes may be changing and evolving, and so classifiers that can update themselves during operation are becoming the state-of-the-art. In this paper we show that data streams may have an important temporal component, which currently is not considered in the evaluation and benchmarking of data stream classifiers. We demonstrate how a naive classifier considering the temporal component only outperforms a lot of current state-of-the-art classifiers on real data streams that have temporal dependence, i.e. data is autocorrelated. We propose to evaluate data stream classifiers taking into account temporal dependence, and introduce a new evaluation measure, which provides a more accurate gauge of data stream classifier performance. In response to the temporal dependence issue we propose a generic wrapper for data stream classifiers, which incorporates the temporal component into the attribute space.

text: Pitfalls in benchmarking data stream classification and how to avoid them Data stream classification plays an important role in modern data analysis, where data arrives in a stream and needs to be mined in real time. In the data stream setting the underlying distribution from which this data comes may be changing and evolving, and so classifiers that can update themselves during operation are becoming the state-of-the-art. In this paper we show that data streams may have an important temporal component, which currently is not considered in the evaluation and benchmarking of data stream classifiers. We demonstrate how a naive classifier considering the temporal component only outperforms a lot of current state-of-the-art classifiers on real data streams that have temporal dependence, i.e. data is autocorrelated. We propose to evaluate data stream classifiers taking into account temporal dependence, and introduce a new evaluation measure, which provides a more accurate gauge of data stream classifier performance. In response to the temporal dependence issue we propose a generic wrapper for data stream classifiers, which incorporates the temporal component into the attribute space.

year: 2013

title: Home and away: the role of intraspecific behavioural variation in biological invasion

authors: Pyper, Nicola

abstract: Invasive populations cause adverse impacts on ecosystems, agriculture, and economic activities. Advancing understanding of how populations respond to environmental changes and develop their invasive status will enable improved prediction, prevention, and management of ecological invasions. Here, we review recent literature and find that behavioural shifts within species across native and invasive populations are common during invasion. We collate examples which demonstrate how behaviours associated with invasion can be an outcome of plastic, pre-adaptive, and/or post-adaptive processes. However, we find that research investigating the molecular basis of observed behavioural shifts associated with invasion is limited. Important research (but perhaps the most challenging to conduct), is the long-term study of ongoing invasions that track species’ behaviour and genetic change throughout the stages of the invasion process. Additionally, future research should aim to establish whether behavioural shifts originate from plasticity, microevolutionary processes, or a combination of both. Common garden experiments (using distinct populations grown under shared conditions), carried out in conjunction with genetic studies that track changes at the molecular level, could aid this endeavour.

text: Home and away: the role of intraspecific behavioural variation in biological invasion Invasive populations cause adverse impacts on ecosystems, agriculture, and economic activities. Advancing understanding of how populations respond to environmental changes and develop their invasive status will enable improved prediction, prevention, and management of ecological invasions. Here, we review recent literature and find that behavioural shifts within species across native and invasive populations are common during invasion. We collate examples which demonstrate how behaviours associated with invasion can be an outcome of plastic, pre-adaptive, and/or post-adaptive processes. However, we find that research investigating the molecular basis of observed behavioural shifts associated with invasion is limited. Important research (but perhaps the most challenging to conduct), is the long-term study of ongoing invasions that track species’ behaviour and genetic change throughout the stages of the invasion process. Additionally, future research should aim to establish whether behavioural shifts originate from plasticity, microevolutionary processes, or a combination of both. Common garden experiments (using distinct populations grown under shared conditions), carried out in conjunction with genetic studies that track changes at the molecular level, could aid this endeavour.

year: 2024-04-04

title: A New Technique for Measuring Runup Variation Using Sub-Aerial Video Imagery

authors: Salmon, Summer Anne

subjects: Wave Runup

abstract: Video monitoring of beaches is becoming the preferred method for observing changes to nearshore morphology. Consequently this work investigates a new technique for predicting the probability of inundation that is based on measuring runup variation using video. Runup is defined as the water-level elevation maxima on the foreshore relative to the still water level and the waterline is defined as the position where the MWL intersects the beach face. Tairua, and Pauanui Beaches, on the north east coast of the North Island of New Zealand, were used as the field site in this study and represent two very different beaches with the same incoming wave and meteorological conditions. Tairua is most frequently in an intermediate beach state, whereas Pauanui is usually flatter in nature.

In order to rectify runup observations, an estimate of the runup elevation was needed (Z). This was estimated by measuring the variation of the waterline over a tidal cycle from time-averaged video images during a storm event and provided beach morphology statistics (i.e. beach slope (α) and beach intercept (b)) used in the rectification process where Z=aX+b. The maximum swash excursions were digitized from time-stacks, and rectified to provide run-up timeseries with duration 20 minutes. Field calibrations revealed a videoed waterline that was seaward of the surveyed waterline. Quantification of this error gave a vertical offset of 0.33m at Tairua and 0.25m at Pauanui. 

At Tairua, incident wave energy was dominant in the swash zone, and the runup distributions followed a Rayleigh distribution. At Pauanui, the flatter beach, the runup distributions were approximately bimodal due to the dominance of infragravity energy in the swash signal. The slope of the beach was a major control on the runup elevation; runup at Pauanui was directly affected by the deepwater wave height and the tide, while at Tairua there was no correlation. Overall, the results of the study indicate realistic runup measurements, over a wide range of time scales and, importantly, during storm events. However, comparisons of videoed runup and empirical runup formulae revealed larger deviations as the beach steepness increased. Furthur tests need to be carried out to see if this is a limitation of this technique, used to measure runup. The runup statistics are consistently higher at Tairua and suggests that swash runs up higher on steeper beaches. However, because of the characteristics of flatter beaches (such as high water tables and low drainage efficiencies) the impact of extreme runup elevations on such beaches are more critical in regards to erosion and/ or inundation.

The coastal environment is of great importance to Māori. Damage to the coast and coastal waahi tapu (places of spiritual importance) caused by erosion and inundation, adversely affects the spiritual and cultural well-being of Māori. For this reason, a chapter was dedicated to investigating the practices used by Māori to protect and preserve the coasts in accordance with tikanga Māori (Māori protocols). Mimicking nature was and still is a practice used by Māori to restore the beaches after erosive events, and includes replanting native dune plants and using natural materials on the beaches to stabilize the dunes. Tapu and rahui (the power and influence of the gods) were imposed on communities to prohibit and prevent people from free access to either food resources or to a particular place, in order to protect people and/ or resources. Interpretations of Māori oral histories provide insights into past local hazards and inform about the safety and viability of certain activities within an area. Environmental indicators were used to identify and forecast extreme weather conditions locally.  Māori knowledge of past hazards, and the coastal environment as a whole, is a valuable resource and provides a unique source of expertise that can contribute to current coastal hazards management plans in New Zealand and provide insights about the areas that may again be impacted by natural hazards.

text: A New Technique for Measuring Runup Variation Using Sub-Aerial Video Imagery Video monitoring of beaches is becoming the preferred method for observing changes to nearshore morphology. Consequently this work investigates a new technique for predicting the probability of inundation that is based on measuring runup variation using video. Runup is defined as the water-level elevation maxima on the foreshore relative to the still water level and the waterline is defined as the position where the MWL intersects the beach face. Tairua, and Pauanui Beaches, on the north east coast of the North Island of New Zealand, were used as the field site in this study and represent two very different beaches with the same incoming wave and meteorological conditions. Tairua is most frequently in an intermediate beach state, whereas Pauanui is usually flatter in nature.

In order to rectify runup observations, an estimate of the runup elevation was needed (Z). This was estimated by measuring the variation of the waterline over a tidal cycle from time-averaged video images during a storm event and provided beach morphology statistics (i.e. beach slope (α) and beach intercept (b)) used in the rectification process where Z=aX+b. The maximum swash excursions were digitized from time-stacks, and rectified to provide run-up timeseries with duration 20 minutes. Field calibrations revealed a videoed waterline that was seaward of the surveyed waterline. Quantification of this error gave a vertical offset of 0.33m at Tairua and 0.25m at Pauanui. 

At Tairua, incident wave energy was dominant in the swash zone, and the runup distributions followed a Rayleigh distribution. At Pauanui, the flatter beach, the runup distributions were approximately bimodal due to the dominance of infragravity energy in the swash signal. The slope of the beach was a major control on the runup elevation; runup at Pauanui was directly affected by the deepwater wave height and the tide, while at Tairua there was no correlation. Overall, the results of the study indicate realistic runup measurements, over a wide range of time scales and, importantly, during storm events. However, comparisons of videoed runup and empirical runup formulae revealed larger deviations as the beach steepness increased. Furthur tests need to be carried out to see if this is a limitation of this technique, used to measure runup. The runup statistics are consistently higher at Tairua and suggests that swash runs up higher on steeper beaches. However, because of the characteristics of flatter beaches (such as high water tables and low drainage efficiencies) the impact of extreme runup elevations on such beaches are more critical in regards to erosion and/ or inundation.

The coastal environment is of great importance to Māori. Damage to the coast and coastal waahi tapu (places of spiritual importance) caused by erosion and inundation, adversely affects the spiritual and cultural well-being of Māori. For this reason, a chapter was dedicated to investigating the practices used by Māori to protect and preserve the coasts in accordance with tikanga Māori (Māori protocols). Mimicking nature was and still is a practice used by Māori to restore the beaches after erosive events, and includes replanting native dune plants and using natural materials on the beaches to stabilize the dunes. Tapu and rahui (the power and influence of the gods) were imposed on communities to prohibit and prevent people from free access to either food resources or to a particular place, in order to protect people and/ or resources. Interpretations of Māori oral histories provide insights into past local hazards and inform about the safety and viability of certain activities within an area. Environmental indicators were used to identify and forecast extreme weather conditions locally.  Māori knowledge of past hazards, and the coastal environment as a whole, is a valuable resource and provides a unique source of expertise that can contribute to current coastal hazards management plans in New Zealand and provide insights about the areas that may again be impacted by natural hazards.

year: 2008