derek-thomas/squad-v1.1-t5-question-generation huggingface dataset:
Classification seeks to describe the diversity of bacterial species by naming and grouping organisms based on similarities. Bacteria can be classified on the basis of cell structure, cellular metabolism or on differences in cell components, such as DNA, fatty acids, pigments, antigens and quinones. While these schemes allowed the identification and classification of bacterial strains, it was unclear whether these differences represented variation between distinct species or between strains of the same species. This uncertainty was due to the lack of distinctive structures in most bacteria, as well as lateral gene transfer between unrelated species. Due to lateral gene transfer, some closely related bacteria can have very different morphologies and metabolisms. To overcome this uncertainty, modern bacterial classification emphasizes molecular systematics, using genetic techniques such as guanine cytosine ratio determination, genome-genome hybridization, as well as sequencing genes that have not undergone extensive lateral gene transfer, such as the rRNA gene. Classification of bacteria is determined by publication in the International Journal of Systematic Bacteriology, and Bergey's Manual of Systematic Bacteriology. The International Committee on Systematic Bacteriology (ICSB) maintains international rules for the naming of bacteria and taxonomic categories and for the ranking of them in the International Code of Nomenclature of Bacteria.

Question: How can we classify the vast variety of bacterial species? Question: Can classification be helpful in determining differences between distinct species? Question: What supports the uncertainty in classification between the same kind of bacteria? Question: What can lateral gene transfer create in bacteria? Question: What is the way modern classification tries to determine species?
The term "bacteria" was traditionally applied to all microscopic, single-cell prokaryotes. However, molecular systematics showed prokaryotic life to consist of two separate domains, originally called Eubacteria and Archaebacteria, but now called Bacteria and Archaea that evolved independently from an ancient common ancestor. The archaea and eukaryotes are more closely related to each other than either is to the bacteria. These two domains, along with Eukarya, are the basis of the three-domain system, which is currently the most widely used classification system in microbiolology. However, due to the relatively recent introduction of molecular systematics and a rapid increase in the number of genome sequences that are available, bacterial classification remains a changing and expanding field. For example, a few biologists argue that the Archaea and Eukaryotes evolved from Gram-positive bacteria.

Question: What would original term "bacteria" determine? Question: What are two main groups of prokaryotic organisms are divided into? Question: What groups of organisms are closely related to each other? Question: What domain system is commonly used nowdays to classify microorganisms?
The Gram stain, developed in 1884 by Hans Christian Gram, characterises bacteria based on the structural characteristics of their cell walls. The thick layers of peptidoglycan in the "Gram-positive" cell wall stain purple, while the thin "Gram-negative" cell wall appears pink. By combining morphology and Gram-staining, most bacteria can be classified as belonging to one of four groups (Gram-positive cocci, Gram-positive bacilli, Gram-negative cocci and Gram-negative bacilli). Some organisms are best identified by stains other than the Gram stain, particularly mycobacteria or Nocardia, which show acid-fastness on Ziehl–Neelsen or similar stains. Other organisms may need to be identified by their growth in special media, or by other techniques, such as serology.

Question: What was developed by Hans Christian  Gram? Question: What year was the Grahm stain was developed? Question: What color do Gram positive bacteria cell walls turn to after being stained? Question: What color is typical for Gram-negative bacteria after staining? Question: What stain shows better test results on Norcadia bacteria?
As with bacterial classification, identification of bacteria is increasingly using molecular methods. Diagnostics using DNA-based tools, such as polymerase chain reaction, are increasingly popular due to their specificity and speed, compared to culture-based methods. These methods also allow the detection and identification of "viable but nonculturable" cells that are metabolically active but non-dividing. However, even using these improved methods, the total number of bacterial species is not known and cannot even be estimated with any certainty. Following present classification, there are a little less than 9,300 known species of prokaryotes, which includes bacteria and archaea; but attempts to estimate the true number of bacterial diversity have ranged from 107 to 109 total species – and even these diverse estimates may be off by many orders of magnitude.

Question: What technique has becoming more popular in classification of bacteria? Question: What tool does DNA based diagnostics use? Question: What else can molecular methods of classification reveal? Question: Can new methods determine a total number of bacteria species?
Some species of bacteria kill and then consume other microorganisms, these species are called predatory bacteria. These include organisms such as Myxococcus xanthus, which forms swarms of cells that kill and digest any bacteria they encounter. Other bacterial predators either attach to their prey in order to digest them and absorb nutrients, such as Vampirovibrio chlorellavorus, or invade another cell and multiply inside the cytosol, such as Daptobacter. These predatory bacteria are thought to have evolved from saprophages that consumed dead microorganisms, through adaptations that allowed them to entrap and kill other organisms.

Question: Why are certain bacteria called predatory? Question: Which way do Vampirovibrio absorb nutrients of other microorganisms? Question: What technique do Daptobacter use in order to kill other microorganism? Question: Where do Daptobacter bacteria come from?
Certain bacteria form close spatial associations that are essential for their survival. One such mutualistic association, called interspecies hydrogen transfer, occurs between clusters of anaerobic bacteria that consume organic acids, such as butyric acid or propionic acid, and produce hydrogen, and methanogenic Archaea that consume hydrogen. The bacteria in this association are unable to consume the organic acids as this reaction produces hydrogen that accumulates in their surroundings. Only the intimate association with the hydrogen-consuming Archaea keeps the hydrogen concentration low enough to allow the bacteria to grow.

Question: What helps bacteria to survive? Question: What kind of bacteria can form interspecies hydrogen transfer? Question: What do anaerobic bacteria consume?
In soil, microorganisms that reside in the rhizosphere (a zone that includes the root surface and the soil that adheres to the root after gentle shaking) carry out nitrogen fixation, converting nitrogen gas to nitrogenous compounds. This serves to provide an easily absorbable form of nitrogen for many plants, which cannot fix nitrogen themselves. Many other bacteria are found as symbionts in humans and other organisms. For example, the presence of over 1,000 bacterial species in the normal human gut flora of the intestines can contribute to gut immunity, synthesise vitamins, such as folic acid, vitamin K and biotin, convert sugars to lactic acid (see Lactobacillus), as well as fermenting complex undigestible carbohydrates. The presence of this gut flora also inhibits the growth of potentially pathogenic bacteria (usually through competitive exclusion) and these beneficial bacteria are consequently sold as probiotic dietary supplements.

Question: Where do bacteria stay in soil? Question: What do bacteria do in soil? Question: How does the conversion help the vegetation? Question: What is the amount of bacteria in human intestines? Question: How does gut flora prevent growth of pathogenic bacteria?
If bacteria form a parasitic association with other organisms, they are classed as pathogens. Pathogenic bacteria are a major cause of human death and disease and cause infections such as tetanus, typhoid fever, diphtheria, syphilis, cholera, foodborne illness, leprosy and tuberculosis. A pathogenic cause for a known medical disease may only be discovered many years after, as was the case with Helicobacter pylori and peptic ulcer disease. Bacterial diseases are also important in agriculture, with bacteria causing leaf spot, fire blight and wilts in plants, as well as Johne's disease, mastitis, salmonella and anthrax in farm animals.

Question: What are the pathogenes? Question: What can pathogenes cause? Question: Can cause for most pathogenic diseases be found soon?
Each species of pathogen has a characteristic spectrum of interactions with its human hosts. Some organisms, such as Staphylococcus or Streptococcus, can cause skin infections, pneumonia, meningitis and even overwhelming sepsis, a systemic inflammatory response producing shock, massive vasodilation and death. Yet these organisms are also part of the normal human flora and usually exist on the skin or in the nose without causing any disease at all. Other organisms invariably cause disease in humans, such as the Rickettsia, which are obligate intracellular parasites able to grow and reproduce only within the cells of other organisms. One species of Rickettsia causes typhus, while another causes Rocky Mountain spotted fever. Chlamydia, another phylum of obligate intracellular parasites, contains species that can cause pneumonia, or urinary tract infection and may be involved in coronary heart disease. Finally, some species, such as Pseudomonas aeruginosa, Burkholderia cenocepacia, and Mycobacterium avium, are opportunistic pathogens and cause disease mainly in people suffering from immunosuppression or cystic fibrosis.

Question: How pathogenes interact with it's human host? Question: Can all bacteria in human body  be harmful? Question: Which bacteria cause Rocky Mountain spotted fever disiease?
Bacterial infections may be treated with antibiotics, which are classified as bacteriocidal if they kill bacteria, or bacteriostatic if they just prevent bacterial growth. There are many types of antibiotics and each class inhibits a process that is different in the pathogen from that found in the host. An example of how antibiotics produce selective toxicity are chloramphenicol and puromycin, which inhibit the bacterial ribosome, but not the structurally different eukaryotic ribosome. Antibiotics are used both in treating human disease and in intensive farming to promote animal growth, where they may be contributing to the rapid development of antibiotic resistance in bacterial populations. Infections can be prevented by antiseptic measures such as sterilizing the skin prior to piercing it with the needle of a syringe, and by proper care of indwelling catheters. Surgical and dental instruments are also sterilized to prevent contamination by bacteria. Disinfectants such as bleach are used to kill bacteria or other pathogens on surfaces to prevent contamination and further reduce the risk of infection.

Question: What type of antibiotics called bacterocidal? Question: What kind of antibiotics are used for prevention of bacterial growth Question: Besides in treating human disease where else are antibiotics used? Question: What is the drawback of using antibiotics if agriculture? Question: What is common prevention method of infections in medicine?
The ability of bacteria to degrade a variety of organic compounds is remarkable and has been used in waste processing and bioremediation. Bacteria capable of digesting the hydrocarbons in petroleum are often used to clean up oil spills. Fertilizer was added to some of the beaches in Prince William Sound in an attempt to promote the growth of these naturally occurring bacteria after the 1989 Exxon Valdez oil spill. These efforts were effective on beaches that were not too thickly covered in oil. Bacteria are also used for the bioremediation of industrial toxic wastes. In the chemical industry, bacteria are most important in the production of enantiomerically pure chemicals for use as pharmaceuticals or agrichemicals.

Question: What quality of bacteria is being widely used re-cyling? Question: What is being used in cleaning up oil spills? Question: What other way is bacteria aiding to nature?
Because of their ability to quickly grow and the relative ease with which they can be manipulated, bacteria are the workhorses for the fields of molecular biology, genetics and biochemistry. By making mutations in bacterial DNA and examining the resulting phenotypes, scientists can determine the function of genes, enzymes and metabolic pathways in bacteria, then apply this knowledge to more complex organisms. This aim of understanding the biochemistry of a cell reaches its most complex expression in the synthesis of huge amounts of enzyme kinetic and gene expression data into mathematical models of entire organisms. This is achievable in some well-studied bacteria, with models of Escherichia coli metabolism now being produced and tested. This understanding of bacterial metabolism and genetics allows the use of biotechnology to bioengineer bacteria for the production of therapeutic proteins, such as insulin, growth factors, or antibodies.

Question: What sciences use bacteria?
Bacteria were first observed by the Dutch microscopist Antonie van Leeuwenhoek in 1676, using a single-lens microscope of his own design. He then published his observations in a series of letters to the Royal Society of London. Bacteria were Leeuwenhoek's most remarkable microscopic discovery. They were just at the limit of what his simple lenses could make out and, in one of the most striking hiatuses in the history of science, no one else would see them again for over a century. Only then were his by-then-largely-forgotten observations of bacteria — as opposed to his famous "animalcules" (spermatozoa) — taken seriously.

Question: Who discovered bacteria? Question: When was the first time bacteria were observed? Question: How was he able to see bacteria? Question: How long did it take for his discovery to be taken seriously?
Though it was known in the nineteenth century that bacteria are the cause of many diseases, no effective antibacterial treatments were available. In 1910, Paul Ehrlich developed the first antibiotic, by changing dyes that selectively stained Treponema pallidum — the spirochaete that causes syphilis — into compounds that selectively killed the pathogen. Ehrlich had been awarded a 1908 Nobel Prize for his work on immunology, and pioneered the use of stains to detect and identify bacteria, with his work being the basis of the Gram stain and the Ziehl–Neelsen stain.

Question: When was the first antibiotic discovered? Question: Who was the creator of antibiotic? Question: What bacteria did he treat first? Question: How was his discovery aknowledged? Question: Who based their research on Enrlich's stains works?
When the board has no embedded components it is more correctly called a printed wiring board (PWB) or etched wiring board. However, the term printed wiring board has fallen into disuse. A PCB populated with electronic components is called a printed circuit assembly (PCA), printed circuit board assembly or PCB assembly (PCBA). The IPC preferred term for assembled boards is circuit card assembly (CCA), and for assembled backplanes it is backplane assemblies. The term PCB is used informally both for bare and assembled boards.

Question: What's the more appropriate, but mostly unused, name for a printed circuit board when it doesn't have embedded components? Question: What's the abbreviation for a printed wiring board? Question: What would we call a printed circuit board with embedded electronics, abbreviated PCA? Question: What organization likes the term "circuit card assembly" for boards that have already been assembled? Question: What abbreviation would the IPC use for an assembled circuit board?
Initially PCBs were designed manually by creating a photomask on a clear mylar sheet, usually at two or four times the true size. Starting from the schematic diagram the component pin pads were laid out on the mylar and then traces were routed to connect the pads. Rub-on dry transfers of common component footprints increased efficiency. Traces were made with self-adhesive tape. Pre-printed non-reproducing grids on the mylar assisted in layout. To fabricate the board, the finished photomask was photolithographically reproduced onto a photoresist coating on the blank copper-clad boards.

Question: What did PCB designers used to employ on a mylar sheet? Question: In the old PCB design method, what was used to connect component pin pads? Question: Designers would rub on a dry transfer of what to make the process of laying out components simpler? Question: What were traces originally made out of? Question: What kind of metal coated the blank boards used to make PCBs?
Panelization is a procedure whereby a number of PCBs are grouped for manufacturing onto a larger board - the panel. Usually a panel consists of a single design but sometimes multiple designs are mixed on a single panel. There are two types of panels: assembly panels - often called arrays - and bare board manufacturing panels. The assemblers often mount components on panels rather than single PCBs because this is efficient. The bare board manufactures always uses panels, not only for efficiency, but because of the requirements the plating process. Thus a manufacturing panel can consist of a grouping of individual PCBs or of arrays, depending on what must be delivered.

Question: What process groups PCBs before transfer to a panel? Question: Is it more common for panels to have a single design or many designs? Question: What type of panels can also be referred to as an "array?' Question: Besides assembly panels, what's the other type of panel? Question: What step of the bare board manufacture would be impossible if panels weren't always used?
The panel is eventually broken apart into individual PCBs; this is called depaneling. Separating the individual PCBs is frequently aided by drilling or routing perforations along the boundaries of the individual circuits, much like a sheet of postage stamps. Another method, which takes less space, is to cut V-shaped grooves across the full dimension of the panel. The individual PCBs can then be broken apart along this line of weakness. Today depaneling is often done by lasers which cut the board with no contact. Laser panelization reduces stress on the fragile circuits.

Question: What is the process called whereby the individual PCBs are separated? Question: What boundaries would you follow to separate PCBs on a panel? Question: What does the V-shaped groove method save? Question: What technology has made depaneling possible without needing to physically interact with the board? Question: What delicate component is less likely to be damaged if laser depanelization is used?
Subtractive methods remove copper from an entirely copper-coated board to leave only the desired copper pattern. In additive methods the pattern is electroplated onto a bare substrate using a complex process. The advantage of the additive method is that less material is needed and less waste is produced. In the full additive process the bare laminate is covered with a photosensitive film which is imaged (exposed to light through a mask and then developed which removes the unexposed film). The exposed areas are sensitized in a chemical bath, usually containing palladium and similar to that used for through hole plating which makes the exposed area capable of bonding metal ions. The laminate is then plated with copper in the sensitized areas. When the mask is stripped, the PCB is finished.

Question: In subtractive methods, what metal covers the board and is then partially removed? Question: Do additive or subtractive methods use less raw materials? Question: What object is used to expose selected parts of the photosensitive film to light? Question: What chemical element is often present in the bath used to sensitive exposed film after it's been imaged? Question: In the additive method, which parts of the laminate are plated with copper?
Semi-additive is the most common process: The unpatterned board has a thin layer of copper already on it. A reverse mask is then applied. (Unlike a subtractive process mask, this mask exposes those parts of the substrate that will eventually become the traces.) Additional copper is then plated onto the board in the unmasked areas; copper may be plated to any desired weight. Tin-lead or other surface platings are then applied. The mask is stripped away and a brief etching step removes the now-exposed bare original copper laminate from the board, isolating the individual traces. Some single-sided boards which have plated-through holes are made in this way. General Electric made consumer radio sets in the late 1960s using additive boards.

Question: In the semi-additive process, what do the areas exposed by the mask become at the end? Question: What metal is used to plate the unmasked parts of the board in the semi-additive method? Question: What weight of plating is possible with copper? Question: After the mask comes off of the board, what step takes off the original plating? Question: What company used to make radios with additive boards in the mid-20th century?
The simplest method, used for small-scale production and often by hobbyists, is immersion etching, in which the board is submerged in etching solution such as ferric chloride. Compared with methods used for mass production, the etching time is long. Heat and agitation can be applied to the bath to speed the etching rate. In bubble etching, air is passed through the etchant bath to agitate the solution and speed up etching. Splash etching uses a motor-driven paddle to splash boards with etchant; the process has become commercially obsolete since it is not as fast as spray etching. In spray etching, the etchant solution is distributed over the boards by nozzles, and recirculated by pumps. Adjustment of the nozzle pattern, flow rate, temperature, and etchant composition gives predictable control of etching rates and high production rates.

Question: What non-professionals might use immersion etching, since it's the easiest way to make a PCB? Question: Is the immersion etching process long or short compared to other production methods? Question: If you wanted to speed up the etching process, you could agitate the bath up or add what to it? Question: What funny name is used for the etching process where air is blown through the etching solution to get it moving around? Question: What's the fastest and most easily controlled process for etching?
Multi-layer printed circuit boards have trace layers inside the board. This is achieved by laminating a stack of materials in a press by applying pressure and heat for a period of time. This results in an inseparable one piece product. For example, a four-layer PCB can be fabricated by starting from a two-sided copper-clad laminate, etch the circuitry on both sides, then laminate to the top and bottom pre-preg and copper foil. It is then drilled, plated, and etched again to get traces on top and bottom layers.

Question: What makes up the inside of a multi-layer PCB? Question: What tool is used to push the trace layers in a multi-layer PCB together? Question: Pressure is one thing you need to apply to make a multi-layer PCB; what's the other thing? Question: If you started with a two-sided laminate etched on either side, laminated to the top and bottom, and processed it again to get traces on the outside layers, how many layers would your final PCB have?