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(2) CREDIT.—The Secretary shall credit toward 
the non-Federal share of the cost of activities car-
ried out under this section the cost of planning, de-
sign, and construction work completed by or on be-
half of the non-Federal interests for implementation 
of measures under this section. The amount of such 
credit shall not exceed the non-Federal share of the 
cost of such activities. 
(3) OPERATION AND MAINTENANCE.—The non-
Federal share of the cost of operation and mainte-
nance of any measures constructed under this sec-
tion shall be 100 percent. 
(c) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated to carry out this section 
$5,000,000. 
SEC. 5053. SAN FRANCISCO, CALIFORNIA. 
(a) IN GENERAL.—The Secretary, in cooperation 
with the Port of San Francisco, California, may carry out 
the project for repair and removal, as appropriate, of Piers 
30-32, 35, 36, 70 (including Wharves 7 and 8), and 80 
in San Francisco, California, substantially in accordance 
with the Port’s redevelopment plan. 
(b) AUTHORIZATION OF APPROPRIATION.—There is 
authorized to be appropriated $25,000,000 to carry out 
this subsection.
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SEC. 5054. SAN FRANCISCO, CALIFORNIA, WATERFRONT 
AREA. 
(a) AREA TO BE DECLARED NONNAVIGABLE; PUB-
LIC INTEREST.—Unless the Secretary finds, after con-
sultation with local and regional public officials (including 
local and regional public planning organizations), that the 
proposed projects to be undertaken within the boundaries 
of the portion of the San Francisco, California, waterfront 
area described in subsection (b) are not in the public inter-
est, such portion is declared to be nonnavigable waters of 
the United States. 
(b) NORTHERN EMBARCADERO SOUTH OF BRYANT 
STREET.—The portion of the San Francisco, California, 
waterfront area referred to in subsection (a) is as follows: 
Beginning at the intersection of the northeasterly prolon-
gation of that portion of the northwesterly line of Bryant 
Street lying between Beale Street and Main Street with 
the southwesterly line of Spear Street, which intersection 
lies on the line of jurisdiction of the San Francisco Port 
Commission; following thence southerly along said line of 
jurisdiction as described in the State of California Harbor 
and Navigation Code Section 1770, as amended in 1961, 
to its intersection with the easterly line of Townsend 
Street along a line that is parallel and distant 10 feet 
southerly from the existing southern boundary of Pier 40 
produced to its point of intersection with the United
280
States Government pier-head line; thence northerly along 
said pier-head line to its intersection with a line parallel 
with, and distant 10 feet easterly from, the existing eas-
terly boundary line of Pier 30–32; thence northerly along 
said parallel line and its northerly prolongation, to a point 
of intersection with a line parallel with, and distant 10 
feet northerly from, the existing northerly boundary of 
Pier 30–32, thence westerly along last said parallel line 
to its intersection with the United States Government 
pier-head line; to the northwesterly line of Bryant Street 
produced northwesterly; thence southwesterly along said 
northwesterly line of Bryant Street produced to the point 
of beginning. 
(c) REQUIREMENT THAT AREA BE IMPROVED.—The 
declaration of nonnavigability under subsection (a) applies 
only to those parts of the area described in subsection (b) 
that are or will be bulkheaded, filled, or otherwise occupied 
by permanent structures and does not affect the applica-
bility of any Federal statute or regulation applicable to 
such parts the day before the date of enactment of this 
Act, including sections 9 and 10 of the Act of March 3, 
1899 (33 U.S.C. 401 and 403; 30 Stat. 1151), commonly 
known as the Rivers and Harbors Appropriation Act of 
1899, section 404 of the Federal Water Pollution Control
281
Act (33 U.S.C. 1344), and the National Environmental 
Policy Act of 1969 (42 U.S.C. 4321 et seq.). 
(d) EXPIRATION DATE.—If, 20 years from the date 
of enactment of this Act, any area or part thereof de-
scribed in subsection (b) is not bulkheaded or filled or oc-
cupied by permanent structures, including marina facili-
ties, in accordance with the requirements set out in sub-
section (c), or if work in connection with any activity per-
mitted in subsection (c) is not commenced within 5 years 
after issuance of such permits, then the declaration of 
nonnavigability for such area or part thereof shall expire. 
SEC. 5055. SAN PABLO BAY, CALIFORNIA, WATERSHED AND 
SUISUN MARSH ECOSYSTEM RESTORATION. 
(a) SAN PABLO BAY WATERSHED, CALIFORNIA.—
(1) IN GENERAL.—The Secretary shall complete 
work, as expeditiously as possible, on the ongoing 
San Pablo Bay watershed, California, study to deter-
mine the feasibility of opportunities for restoring, 
preserving and protecting the San Pablo Bay water-
shed. 
(2) REPORT.—Not later than March 31, 2008, 
the Secretary shall submit to Congress a report on 
the results of the study. 
(b) SUISUN MARSH, CALIFORNIA.—The Secretary 
shall conduct a comprehensive study to determine the fea-
282
sibility of opportunities for restoring, preserving and pro-
tecting the Suisun Marsh, California. 
(c) SAN PABLO AND SUISUN BAY MARSH WATER-
SHED CRITICAL RESTORATION PROJECTS.—
(1) IN GENERAL.—The Secretary may partici-
pate in critical restoration projects that will produce, 
consistent with Federal programs, projects, and ac-
tivities, immediate and substantial ecosystem res-
toration, preservation, and protection benefits in the 
following sub-watersheds of the San Pablo and 
Suisun Bay Marsh watersheds: 
(A) The tidal areas of the Petaluma River, 
Napa-Sonoma Marsh. 
(B) The shoreline of West Contra Costa 
County. 
(C) Novato Creek. 
(D) Suisun Marsh. 
(E) Gallinas-Miller Creek. 
(2) TYPES
OF
ASSISTANCE.—Participation in 
critical restoration projects under this subsection 
may include assistance for planning, design, or con-
struction. 
(d) NON-FEDERAL
INTERESTS.—Notwithstanding 
section 221(b) of the Flood Control Act of 1970 (42 
U.S.C. 1962d–5b(b)), a non-Federal interest may include
283
for any project undertaken under this section a nonprofit 
entity with the consent of the affected local government. 
(e) CREDIT.—The Secretary shall credit toward the 
non-Federal share of the cost of construction of a project 
under this section—
(1) the value of any lands, easements, rights-of-
way, dredged material disposal areas, or relocations 
provided by the non-Federal interest for carrying out 
the project, regardless of the date of acquisition; 
(2) funds received from the CALFED Bay-
Delta program; and 
(3) the cost of the studies, design, and con-
struction work carried out by the non-Federal inter-
est before the date of execution of a partnership 
agreement for the project if the Secretary deter-
mines that the work is integral to the project. 
(f) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated to carry out this section 
$40,000,000. 
SEC. 5056. STOCKTON, CALIFORNIA. 
(a) REEVALUATION.—The Secretary shall reevaluate 
the feasibility of the Lower Mosher Slough element and 
the levee extensions on the Upper Calaveras River element 
of the project for flood control, Stockton Metropolitan 
Area, California, carried out under section 211(f)(3) of the