273
whole or in part, the non-Federal share of the construction 
of any project carried out under this section if such funds 
are authorized to be used to carry out such project. 
(c) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated to carry out this section 
$35,200,000. 
SEC. 5037. WRANGELL HARBOR, ALASKA. 
(a) GENERAL NAVIGATION FEATURES.—In carrying 
out the project for navigation, Wrangell Harbor, Alaska, 
authorized by section 101(b)(1) of the Water Resources 
Development Act of 1999 (113 Stat. 279), the Secretary 
shall consider the dredging of the mooring basin and con-
struction of the inner harbor facilities to be general navi-
gation features for purposes of estimating the non-Federal 
share of project costs. 
(b) REVISION OF PARTNERSHIP AGREEMENT.—The 
Secretary shall revise the partnership agreement for the 
project to reflect the change required by subsection (a). 
SEC. 5038. AUGUSTA AND CLARENDON, ARKANSAS. 
(a) IN GENERAL.—The Secretary is authorized to 
perform operation, maintenance, and rehabilitation of au-
thorized and completed levees on the White River between 
Augusta and Clarendon, Arkansas. 
(b) REIMBURSEMENT.—After performing the oper-
ation, maintenance, and rehabilitation under subsection
274
(a), the Secretary shall seek reimbursement from the Sec-
retary of the Interior of an amount equal to the costs allo-
cated to benefits to a Federal wildlife refuge of such oper-
ation, maintenance, and rehabilitation. 
SEC. 5039. DES ARC LEVEE PROTECTION, ARKANSAS. 
The Secretary shall review the project for flood con-
trol, Des Arc, Arkansas, to determine whether bank and 
channel scour along the White River threaten the existing 
project and whether the scour is as a result of a design 
deficiency. If the Secretary determines that such condi-
tions exist as a result of a deficiency, the Secretary shall 
carry out measures to eliminate the deficiency. 
SEC. 5040. LOOMIS LANDING, ARKANSAS. 
The Secretary shall conduct a study of shore damage 
in the vicinity of Loomis Landing, Arkansas, to determine 
if the damage is the result of a Federal navigation project, 
and, if the Secretary determines that the damage is the 
result of a Federal navigation project, the Secretary shall 
carry out a project to mitigate the damage under section 
111 of the River and Harbor Act of 1968 (33 U.S.C. 
426i). 
SEC. 5041. ST. FRANCIS RIVER BASIN, ARKANSAS AND MIS-
SOURI. 
The Secretary shall conduct a study of increased sil-
tation and streambank erosion in the St. Francis River
275
Basin, Arkansas and Missouri, to determine if the siltation 
or erosion, or both, are the result of a Federal flood con-
trol project and, if the Secretary determines that the silta-
tion or erosion, or both, are the result of a Federal flood 
control project, the Secretary shall carry out a project to 
mitigate the siltation or erosion, or both. 
SEC. 5042. WHITE RIVER BASIN, ARKANSAS. 
(a) MINIMUM FLOWS.—
(1) IN GENERAL.—In carrying out section 304 
of the Water Resources Development Act of 2000 
(114 Stat. 2601), the Secretary shall implement al-
ternatives BS–3 and NF–7, as described in the 
White River Minimum Flows Reallocation Study Re-
port, Arkansas and Missouri, dated July 2004. 
(2) COST
SHARING.—Reallocation of storage 
and installation of facilities under this subsection 
shall be considered fish and wildlife enhancement 
that provides national benefits and shall be a Fed-
eral expense in accordance with section 906(e)(1) of 
the Water Resources Development Act of 1986 (33 
U.S.C. 2283(e)(1)). 
(3) OFFSET.—In carrying out this subsection, 
losses to hydropower shall be offset by a reduction, 
not to exceed $17,000,000, in the costs allocated to 
hydropower, as determined by the present value of
276
the estimated replacement cost of the electrical en-
ergy and capacity at the time of the implementation. 
(b) FISH HATCHERY.—In operating the fish hatchery 
at Beaver Lake, Arkansas, authorized by section 105 of 
the Water Resources Development Act of 1976 (90 Stat. 
2921), losses to hydropower shall be offset by a reduction, 
not to exceed $2,200,000, in the costs allocated to hydro-
power, as determined by the present value of the estimated 
replacement cost of the electrical energy and capacity at 
the time of the implementation. 
(c) REPEAL.—Section 374 of the Water Resources 
Development Act of 1999 (113 Stat. 321) is repealed. 
SEC. 5043. CAMBRIA, CALIFORNIA. 
Section 219(f)(48) of the Water Resources Develop-
ment Act of 1992 (114 Stat. 2763A–220) is amended—
(1) by striking ‘‘$10,300,000’’ and inserting the 
following: 
‘‘(A) IN GENERAL.—$10,300,000’’; 
(2) by adding at the end the following: 
‘‘(B) CREDIT.—The Secretary shall credit 
toward the non-Federal share of the cost of the 
project not to exceed $3,000,000 for the cost of 
planning and design work carried out by the 
non-Federal interest before the date of the 
partnership agreement for the project if the
277
Secretary determines that the work is integral 
to the project.’’; and 
(3) by aligning the remainder of the text of 
subparagraph (A) (as designated by paragraph (1) 
of this section) with subparagraph (B) (as added by 
paragraph (2) of this section). 
SEC. 
5044. 
CONTRA 
COSTA 
CANAL, 
OAKLEY 
AND 
KNIGHTSEN, 
CALIFORNIA; 
MALLARD 
SLOUGH, PITTSBURG, CALIFORNIA. 
Sections 512 and 514 of the Water Resources Devel-
opment Act of 2000 (114 Stat. 2650) are each amended 
by adding at the end the following: ‘‘All planning, study, 
design, and construction on the project shall be carried 
out by the office of the district engineer, San Francisco, 
California.’’. 
SEC. 5045. DANA POINT HARBOR, CALIFORNIA. 
The Secretary shall conduct a study of the causes of 
water quality degradation within Dana Point Harbor, 
California, to determine if the degradation is the result 
of a Federal navigation project, and, if the Secretary de-
termines that the degradation is the result of a Federal 
navigation project, the Secretary shall carry out a project 
to mitigate the degradation at Federal expense.
278
SEC. 5046. EAST SAN JOAQUIN COUNTY, CALIFORNIA. 
Section 219(f)(22) of the Water Resources Develop-
ment Act of 1992 (113 Stat. 336) is amended—
(1) by striking ‘‘$25,000,000’’ and inserting the 
following: 
‘‘(A) IN GENERAL.—$25,000,000’’; 
(2) by adding at the end the following: 
‘‘(B) CREDIT.—The Secretary shall credit 
toward the non-Federal share of the cost of the 
project (i) the cost of design and construction 
work carried out by the non-Federal interest 
before, on, or after the date of the partnership 
agreement for the project if the Secretary de-
termines that the work is integral to the 
project; and (ii) the cost of provided for the 
project by the non-Federal interest. 
‘‘(C) IN-KIND CONTRIBUTIONS.—The non-
Federal interest may provide any portion of the 
non-Federal share of the cost of the project in 
the form of in-kind services and materials.’’; 
and 
(3) by aligning the remainder of the text of 
subparagraph (A) (as designated by paragraph (1) 
of this section) with subparagraph (B) (as added by 
paragraph (2) of this section).
279
SEC. 5047. EASTERN SANTA CLARA BASIN, CALIFORNIA. 
Section 111(c) of the Miscellaneous Appropriations 
Act, 2001 (as enacted into law by Public Law 106–554; 
114 Stat. 2763A-224) is amended—
(1) by striking ‘‘$25,000,000’’ and inserting 
‘‘$28,000,000’’; and 
(2) by striking ‘‘$7,000,000’’ and inserting 
‘‘$10,000,000’’. 
SEC. 5048. LA–3 DREDGED MATERIAL OCEAN DISPOSAL 
SITE DESIGNATION, CALIFORNIA. 
The third sentence of section 102(c)(4) of the Marine 
Protection, Research, and Sanctuaries Act of 1972 (33 
U.S.C. 1412(c)(4)) is amended by striking ‘‘January 1, 
2003’’ and inserting ‘‘January 1, 2007’’. 
SEC. 5049. LANCASTER, CALIFORNIA. 
Section 219(f)(50) of the Water Resources Develop-
ment Act of 1992 (114 Stat. 2763A-220) is amended—
(1) by inserting after ‘‘water’’ the following: 
‘‘and wastewater’’; 
(2) by striking ‘‘$14,500,000’’ and inserting 
‘‘$24,500,000’’. 
SEC. 5050. ONTARIO AND CHINO, CALIFORNIA. 
The Secretary shall carry out a project for flood dam-
age reduction under section 205 of the Flood Control Act 
of 1948 (33 U.S.C. 701s), in the vicinity of Ontario and
280
Chino, California, if the Secretary determines that the 
project is feasible. 
SEC. 5051. PINE FLAT DAM AND RESERVOIR, CALIFORNIA. 
(a) IN GENERAL.—The Secretary shall review the 
Kings River Fisheries Management Program Framework 
Agreement, dated May 29, 1999, among the California 
Department of Fish and Game, the Kings River Water 
Association, and the Kings River Conservation District 
and, if the Secretary determines that the management 
program is feasible, the Secretary may participate in the 
management program. 
(b) PROHIBITION.—Nothing in this section author-
izes any project for the raising of, or the construction of, 
a multilevel intake structure at Pine Flat Dam, California. 
(c) USE OF EXISTING STUDIES.—In carrying out this 
section, the Secretary shall use, to the maximum extent 
practicable, studies in existence on the date of enactment 
of this Act, including data and environmental documenta-
tion in the Report of the Chief of Engineers, Pine Flat 
Dam and Reservoir, Fresno County, California, dated July 
19, 2002. 
(d) CREDIT.—The Secretary shall credit toward the 
non-Federal share of the cost of the project the cost of 
planning, design, and construction work carried out by the 
non-Federal interest before the date of the partnership
281
agreement for the project if the Secretary determines that 
the work is integral to the project. 
(e) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated to $20,000,000 to carry out 
this section. 
SEC. 5052. RAYMOND BASIN, SIX BASINS, CHINO BASIN, AND 
SAN GABRIEL BASIN, CALIFORNIA. 
(a) COMPREHENSIVE PLAN.—The Secretary, in con-
sultation and coordination with appropriate Federal, 
State, and local entities, shall develop a comprehensive 
plan for the management of water resources in the Ray-
mond Basin, Six Basins, Chino Basin, and San Gabriel 
Basin, California. The Secretary may carry out activities 
identified in the comprehensive plan to demonstrate prac-
ticable alternatives for water resources management. 
(b) NON-FEDERAL SHARE.—
(1) IN GENERAL.—The non-Federal share of 
the cost of activities carried out under this section 
shall be 35 percent. 
(2) CREDIT.—The Secretary shall credit toward 
the non-Federal share of the cost of activities car-
ried out under this section the cost of planning, de-
sign, and construction work completed by or on be-
half of the non-Federal interests for implementation 
of measures under this section. The amount of such
282
credit shall not exceed the non-Federal share of the 
cost of such activities. 
(3) OPERATION AND MAINTENANCE.—The non-
Federal share of the cost of operation and mainte-
nance of any measures constructed under this sec-
tion shall be 100 percent. 
(c) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated to carry out this section 
$5,000,000. 
SEC. 5053. SACRAMENTO DEEP WATER SHIP CHANNEL, 
CALIFORNIA. 
(a) IN GENERAL.—The Secretary is authorized to 
transfer title to the Bascule Bridge, deauthorized by sec-
tion 347(a)(2) of the Water Resources Development Act 
of 2000 (114. Stat. 2618), to the city of West Sacramento, 
California, subject to the execution of an agreement by 
the Secretary and the city which specifies the terms and 
conditions for such transfer. The terms and conditions of 
the transfer shall include a provision authorizing the Sec-
retary to participate in the construction of a replacement 
bridge following the removal of the Bascule Bridge. 
(b) AUTHORIZATION OF APPROPRIATION.—There is 
authorized to be appropriated $5,000,000 for the Sec-
retary to participate in the construction of a replacement 
bridge under this section.
283
SEC. 5054. SAN FRANCISCO, CALIFORNIA. 
(a) IN GENERAL.—The Secretary, in cooperation 
with the Port of San Francisco, California, may carry out 
the project for repair and removal, as appropriate, of Piers 
35, 36, and 80 in San Francisco, California, substantially 
in accordance with the Port’s redevelopment plan. 
(b) AUTHORIZATION OF APPROPRIATION.—There is 
authorized to be appropriated $20,000,000 to carry out 
this subsection. 
SEC. 5055. SAN FRANCISCO, CALIFORNIA, WATERFRONT 
AREA. 
(a) AREA TO BE DECLARED NONNAVIGABLE; PUB-
LIC INTEREST.—Unless the Secretary finds, after con-
sultation with local and regional public officials (including 
local and regional public planning organizations), that the 
proposed projects to be undertaken within the boundaries 
of the portion of the San Francisco, California, waterfront 
area described in subsection (b) are not in the public inter-
est, such portion is declared to be nonnavigable waters of 
the United States. 
(b) NORTHERN EMBARCADERO SOUTH OF BRYANT 
STREET.—The portion of the San Francisco, California, 
waterfront area referred to in subsection (a) is as follows: 
Beginning at the intersection of the northeasterly prolon-
gation of that portion of the northwesterly line of Bryant 
Street lying between Beale Street and Main Street with
284
the southwesterly line of Spear Street, which intersection 
lies on the line of jurisdiction of the San Francisco Port 
Commission; following thence southerly along said line of 
jurisdiction as described in the State of California Harbor 
and Navigation Code Section 1770, as amended in 1961, 
to its intersection with the easterly line of Townsend 
Street along a line that is parallel and distant 10 feet dis-
tant from the existing southern boundary of Pier 40 pro-
duced to its point of intersection with the United States 
Government pier-head line; thence northerly along said 
pier-head line to its intersection with a line parallel with, 
and distant 10 feet easterly from, the existing easterly 
boundary line of Pier 30–32; thence northerly along said 
parallel line and its northerly prolongation, to a point of 
intersection with a line parallel with, and distant 10 feet 
northerly from, the existing northerly boundary of Pier 
30–32, thence westerly along last said parallel line to its 
intersection with the United States Government pier-head 
line; to the northwesterly line of Bryant Street produced 
northwesterly; thence southwesterly along said northwest-
erly line of Bryant Street produced to the point of begin-
ning. 
(c) REQUIREMENT THAT AREA BE IMPROVED.—The 
declaration of nonnavigability under subsection (a) applies 
only to those parts of the area described in subsection (b)