265 
(d) CREDIT.—The Secretary shall credit toward the 
non-Federal share of the cost of the project the cost of plan-
ning, design, and construction work carried out by the non- 
Federal interest before the date of the partnership agreement 
for the project if the Secretary determines that the work is 
integral to the project. 
(e) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated to $20,000,000 to carry out 
this section. 
SEC. 5049. RAYMOND BASIN, SIX BASINS, CHINO BASIN, AND 
SAN GABRIEL BASIN, CALIFORNIA. 
(a) COMPREHENSIVE PLAN.—The Secretary, in con-
sultation and coordination with appropriate Federal, State, 
and local entities, shall develop a comprehensive plan for 
the management of water resources in the Raymond Basin, 
Six Basins, Chino Basin, and San Gabriel Basin, Cali-
fornia. The Secretary may carry out activities identified 
in the comprehensive plan to demonstrate practicable alter-
natives for water resources management. 
(b) NON-FEDERAL SHARE.— 
(1) IN GENERAL.—The non-Federal share of the 
cost of activities carried out under this section shall 
be 35 percent. 
(2) CREDIT.—The Secretary shall credit toward 
the non-Federal share of the cost of activities carried 
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out under this section the cost of planning, design, 
and construction work completed by or on behalf of 
the non-Federal interests for implementation of meas-
ures under this section. The amount of such credit 
shall not exceed the non-Federal share of the cost of 
such activities. 
(3) OPERATION AND MAINTENANCE.—The non- 
Federal share of the cost of operation and mainte-
nance of any measures constructed under this section 
shall be 100 percent. 
(c) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated to carry out this section 
$5,000,000. 
SEC. 5050. SAN FRANCISCO, CALIFORNIA. 
(a) IN GENERAL.—The Secretary, in cooperation with 
the Port of San Francisco, California, may carry out the 
project for repair and removal, as appropriate, of Piers 30- 
32, 35, 36, 70 (including Wharves 7 and 8), and 80 in San 
Francisco, California, substantially in accordance with the 
Port’s redevelopment plan. 
(b) AUTHORIZATION
OF APPROPRIATION.—There is 
authorized to be appropriated $25,000,000 to carry out this 
subsection. 
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SEC. 5051. SAN FRANCISCO, CALIFORNIA, WATERFRONT 
AREA. 
(a) AREA TO BE DECLARED NONNAVIGABLE; PUBLIC 
INTEREST.—Unless the Secretary finds, after consultation 
with local and regional public officials (including local and 
regional public planning organizations), that the proposed 
projects to be undertaken within the boundaries of the por-
tion of the San Francisco, California, waterfront area de-
scribed in subsection (b) are not in the public interest, such 
portion is declared to be nonnavigable waters of the United 
States. 
(b) NORTHERN EMBARCADERO SOUTH
OF BRYANT 
STREET.—The portion of the San Francisco, California, 
waterfront area referred to in subsection (a) is as follows: 
Beginning at the intersection of the northeasterly prolonga-
tion of that portion of the northwesterly line of Bryant 
Street lying between Beale Street and Main Street with the 
southwesterly line of Spear Street, which intersection lies 
on the line of jurisdiction of the San Francisco Port Com-
mission; following thence southerly along said line of juris-
diction as described in the State of California Harbor and 
Navigation Code Section 1770, as amended in 1961, to its 
intersection with the easterly line of Townsend Street along 
a line that is parallel and distant 10 feet southerly from 
the existing southern boundary of Pier 40 produced to its 
point of intersection with the United States Government 
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pier-head line; thence northerly along said pier-head line 
to its intersection with a line parallel with, and distant 
10 feet easterly from, the existing easterly boundary line 
of Pier 30–32; thence northerly along said parallel line and 
its northerly prolongation, to a point of intersection with 
a line parallel with, and distant 10 feet northerly from, 
the existing northerly boundary of Pier 30–32, thence west-
erly along last said parallel line to its intersection with 
the United States Government pier-head line; to the north-
westerly line of Bryant Street produced northwesterly; 
thence southwesterly along said northwesterly line of Bry-
ant Street produced to the point of beginning. 
(c) REQUIREMENT THAT AREA BE IMPROVED.—The 
declaration of nonnavigability under subsection (a) applies 
only to those parts of the area described in subsection (b) 
that are or will be bulkheaded, filled, or otherwise occupied 
by permanent structures and does not affect the applica-
bility of any Federal statute or regulation applicable to 
such parts the day before the date of enactment of this Act, 
including sections 9 and 10 of the Act of March 3, 1899 
(33 U.S.C. 401 and 403; 30 Stat. 1151), commonly known 
as the Rivers and Harbors Appropriation Act of 1899, sec-
tion 404 of the Federal Water Pollution Control Act (33 
U.S.C. 1344), and the National Environmental Policy Act 
of 1969 (42 U.S.C. 4321 et seq.). 
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(d) EXPIRATION DATE.—If, 20 years from the date of 
enactment of this Act, any area or part thereof described 
in subsection (b) is not bulkheaded or filled or occupied by 
permanent structures, including marina facilities, in ac-
cordance with the requirements set out in subsection (c), 
or if work in connection with any activity permitted in 
subsection (c) is not commenced within 5 years after 
issuance of such permits, then the declaration of nonnaviga-
bility for such area or part thereof shall expire. 
SEC. 5052. SAN PABLO BAY, CALIFORNIA, WATERSHED AND 
SUISUN MARSH ECOSYSTEM RESTORATION. 
(a) SAN PABLO BAY WATERSHED, CALIFORNIA.— 
(1) IN GENERAL.—The Secretary shall complete 
work, as expeditiously as possible, on the ongoing San 
Pablo Bay watershed, California, study to determine 
the feasibility of opportunities for restoring, pre-
serving and protecting the San Pablo Bay watershed. 
(2) REPORT.—Not later than March 31, 2008, 
the Secretary shall submit to Congress a report on the 
results of the study. 
(b) SUISUN MARSH, CALIFORNIA.—The Secretary shall 
conduct a comprehensive study to determine the feasibility 
of opportunities for restoring, preserving and protecting the 
Suisun Marsh, California. 
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(c) SAN PABLO AND SUISUN BAY MARSH WATERSHED 
CRITICAL RESTORATION PROJECTS.— 
(1) IN GENERAL.—The Secretary may partici-
pate in critical restoration projects that will produce, 
consistent with Federal programs, projects, and ac-
tivities, immediate and substantial ecosystem restora-
tion, preservation, and protection benefits in the fol-
lowing sub-watersheds of the San Pablo and Suisun 
Bay Marsh watersheds: 
(A) The tidal areas of the Petaluma River, 
Napa-Sonoma Marsh. 
(B) The shoreline of West Contra Costa 
County. 
(C) Novato Creek. 
(D) Suisun Marsh. 
(E) Gallinas-Miller Creek. 
(2) TYPES
OF
ASSISTANCE.—Participation in 
critical restoration projects under this subsection may 
include assistance for planning, design, or construc-
tion. 
(d) NON-FEDERAL INTERESTS.—Notwithstanding sec-
tion 221(b) of the Flood Control Act of 1970 (42 U.S.C. 
1962d–5b(b)), a non-Federal interest may include for any 
project undertaken under this section a nonprofit entity 
with the consent of the affected local government. 
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(e) CREDIT.—The Secretary shall credit toward the 
non-Federal share of the cost of construction of a project 
under this section— 
(1) the value of any lands, easements, rights-of- 
way, dredged material disposal areas, or relocations 
provided by the non-Federal interest for carrying out 
the project, regardless of the date of acquisition; 
(2) funds received from the CALFED Bay-Delta 
program; and 
(3) the cost of the studies, design, and construc-
tion work carried out by the non-Federal interest be-
fore the date of execution of a partnership agreement 
for the project if the Secretary determines that the 
work is integral to the project. 
(f) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated to carry out this section 
$40,000,000. 
SEC. 5053. STOCKTON, CALIFORNIA. 
(a) REEVALUATION.—The Secretary shall reevaluate 
the feasibility of the Lower Mosher Slough element and the 
levee extensions on the Upper Calaveras River element of 
the project for flood control, Stockton Metropolitan Area, 
California, carried out under section 211(f)(3) of the Water 
Resources Development Act of 1996 (110 Stat. 3683), to de-
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termine the eligibility of such elements for reimbursement 
under section 211 of such Act (33 U.S.C. 701b–13). 
(b) SPECIAL RULES FOR REEVALUATION.—In con-
ducting the reevaluation under subsection (a), the Secretary 
shall not reject a feasibility determination based on one or 
more of the policies of the Corps of Engineers concerning 
the frequency of flooding, the drainage area, and the 
amount of runoff. 
(c) REIMBURSEMENT.—If the Secretary determines 
that the elements referred to subsection (a) are feasible, the 
Secretary shall reimburse, subject to appropriations, the 
non-Federal interest under section 211 of the Water Re-
sources Development Act of 1996 for the Federal share of 
the cost of such elements. 
SEC. 5054. CHARLES HERVEY TOWNSHEND BREAKWATER, 
NEW HAVEN HARBOR, CONNECTICUT. 
(a) DESIGNATION.—The western breakwater for the 
project for navigation, New Haven Harbor, Connecticut, 
authorized by the first section of the Act of September 19, 
1890 (26 Stat. 426), shall be known and designated as the 
‘‘Charles Hervey Townshend Breakwater’’. 
(b) REFERENCES.—Any reference in a law, map, regu-
lation, document, paper, or other record of the United 
States to the breakwater referred to in subsection (a) shall 
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be deemed to be a reference to the ‘‘Charles Hervey 
Townshend Breakwater’’. 
SEC. 5055. FLORIDA KEYS WATER QUALITY IMPROVEMENTS. 
Section 109 of the Miscellaneous Appropriations Act, 
2001 (enacted into law by Public Law 106–554) (114 Stat. 
2763A–222) is amended— 
(1) by adding at the end of subsection (e)(2) the 
following: 
‘‘(C) CREDIT FOR WORK PRIOR TO EXECU-
TION OF THE PARTNERSHIP AGREEMENT.—The 
Secretary shall credit toward the non-Federal 
share of the cost of the project— 
‘‘(i) the cost of construction work car-
ried out by the non-Federal interest before 
the date of the partnership agreement for 
the project if the Secretary determines that 
the work is integral to the project; and 
‘‘(ii) the cost of land acquisition car-
ried out by the non-Federal interest for 
projects to be carried out under this sec-
tion.’’; and 
(2) in subsection (f) by striking ‘‘$100,000,000’’ 
and inserting ‘‘$100,000,000, of which not more than 
$15,000,000 may be used to provide planning, design, 
and construction assistance to the Florida Keys Aque-
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duct Authority for a water treatment plant, Florida 
City, Florida’’. 
SEC. 5056. LAKE WORTH, FLORIDA. 
The Secretary may carry out necessary repairs for the 
Lake Worth bulkhead replacement project, West Palm 
Beach, Florida, at an estimated total cost of $9,000,000. 
SEC. 5057. RILEY CREEK RECREATION AREA, IDAHO. 
The Secretary is authorized to carry out the Riley 
Creek Recreation Area Operation Plan of the Albeni Falls 
Management Plan, dated October 2001, for the Riley Creek 
Recreation Area, Albeni Falls Dam, Bonner County, Idaho. 
SEC. 5058. RECONSTRUCTION OF ILLINOIS FLOOD PROTEC-
TION PROJECTS. 
(a) IN GENERAL.—The Secretary may participate in 
the reconstruction of an eligible flood control project if the 
Secretary determines that such reconstruction is not re-
quired as a result of improper operation and maintenance 
of the project by the non-Federal interest. 
(b) COST SHARING.—The non-Federal share of the 
costs for the reconstruction of a flood control project author-
ized by this section shall be the same non-Federal share that 
was applicable to construction of the project. The non-Fed-
eral interest shall be responsible for operation and mainte-
nance and repair of a project for which reconstruction is 
undertaken under this section. 
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(c) RECONSTRUCTION DEFINED.—In this section, the 
term ‘‘reconstruction’’, as used with respect to a project, 
means addressing major project deficiencies caused by long- 
term degradation of the foundation, construction materials, 
or engineering systems or components of the project, the re-
sults of which render the project at risk of not performing 
in compliance with its authorized project purposes. In ad-
dressing such deficiencies, the Secretary may incorporate 
current design standards and efficiency improvements, in-
cluding the replacement of obsolete mechanical and elec-
trical components at pumping stations, if such incorpora-
tion does not significantly change the scope, function, and 
purpose of the project as authorized. 
(d) ELIGIBLE PROJECTS.—The following flood control 
projects are eligible for reconstruction under this section: 
(1) Clear Creek Drainage and Levee District, Il-
linois. 
(2) Fort Chartres and Ivy Landing Drainage 
District, Illinois. 
(3) Cairo, Illinois Mainline Levee, Cairo, Illi-
nois. 
(4) Goose Pond Pump Station, Cairo, Illinois. 
(5) Cottonwood Slough Pump Station, Alexander 
County, Illinois. 
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(6) 10th and 28th Street Pump Stations, Cairo, 
Illinois. 
(7) Prairie Du Pont Levee and Sanitary Dis-
trict, including Fish Lake Drainage and Levee Dis-
trict, Illinois. 
(8) Flood control levee projects in Brookport, 
Shawneetown, 
Old 
Shawneetown, 
Golconda, 
Rosiclare, Harrisburg, and Reevesville, Illinois. 
(e) JUSTIFICATION.—The reconstruction of a project 
authorized by this section shall not be considered a sepa-
rable element of the project. 
(f) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated— 
(1) $15,000,000 to carry out the projects de-
scribed in paragraphs (1) through (7) of subsection 
(d); and 
(2) $15,000,000 to carry out the projects de-
scribed in subsection (d)(8). 
Such sums shall remain available until expended. 
SEC. 5059. ILLINOIS RIVER BASIN RESTORATION. 
(a) 
EXTENSION
OF
AUTHORIZATION.—Section 
519(c)(2) of the Water Resources Development Act of 2000 
(114 Stat. 2654) is amended by striking ‘‘2004’’ and insert-
ing ‘‘2010’’. 
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(b) IN-KIND SERVICES.—Section 519(g)(3) of such Act 
(114 Stat. 2655) is amended by inserting before the period 
at the end of the first sentence ‘‘if such services are provided 
not more than 5 years before the date of initiation of the 
project or activity’’. 
(c) NONPROFIT ENTITIES AND MONITORING.—Section 
519 of such Act (114 Stat. 2654) is amended by adding 
at the end the following: 
‘‘(h) NONPROFIT ENTITIES.—Notwithstanding section 
221(b) of the Flood Control Act of 1970 (42 U.S.C. 1962d– 
5b(b)), a non-Federal interest may include for any project 
undertaken under this section a nonprofit entity, with the 
consent of the affected local government. 
‘‘(i) MONITORING.—The Secretary shall develop an Il-
linois river basin monitoring program to support the plan 
referred to in subsection (b). Data collected under the moni-
toring program shall incorporate data provided by the 
State of Illinois and shall be publicly accessible through 
electronic means.’’. 
SEC. 5060. KASKASKIA RIVER BASIN, ILLINOIS, RESTORA-
TION. 
(a) KASKASKIA RIVER BASIN DEFINED.—In this sec-
tion, the term ‘‘Kaskaskia River Basin’’ means the 
Kaskaskia River, Illinois, its backwaters, its side channels, 
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and all tributaries, including their watersheds, draining 
into the Kaskaskia River. 
(b) COMPREHENSIVE PLAN.— 
(1) DEVELOPMENT.—The Secretary shall de-
velop, as expeditiously as practicable, a comprehen-
sive plan for the purpose of restoring, preserving, and 
protecting the Kaskaskia River Basin. 
(2) 
TECHNOLOGIES
AND
INNOVATIVE
AP-
PROACHES.—The comprehensive plan shall provide 
for the development of new technologies and innova-
tive approaches— 
(A) to enhance the Kaskaskia River as a 
transportation corridor; 
(B) to improve water quality within the en-
tire Kaskaskia River Basin; 
(C) to restore, enhance, and preserve habitat 
for plants and wildlife; 
(D) 
to 
ensure 
aquatic 
integrity 
of 
sidechannels 
and 
backwaters 
and 
their 
connectivity with the mainstem river; 
(E) to increase economic opportunity for 
agriculture and business communities; and 
(F) to reduce the impacts of flooding to 
communities and landowners. 
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(3) SPECIFIC COMPONENTS.—The comprehensive 
plan shall include such features as are necessary to 
provide for— 
(A) the development and implementation of 
a program for sediment removal technology, sedi-
ment characterization, sediment transport, and 
beneficial uses of sediment; 
(B) the development and implementation of 
a program for the planning, conservation, eval-
uation, and construction of measures for fish and 
wildlife habitat conservation and rehabilitation, 
and stabilization and enhancement of land and 
water resources in the basin; 
(C) the development and implementation of 
a long-term resource monitoring program; 
(D) a conveyance study of the Kaskaskia 
River floodplain from Vandalia, Illinois, to 
Carlyle Lake to determine the impacts of existing 
and future waterfowl improvements on flood 
stages, including detailed surveys and mapping 
information to ensure proper hydraulic and 
hydrological analysis; 
(E) the development and implementation of 
a computerized inventory and analysis system; 
and 
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(F) the development and implementation of 
a systemic plan to reduce flood impacts by 
means of ecosystem restoration projects. 
(4) CONSULTATION.—The comprehensive plan 
shall be developed by the Secretary in consultation 
with appropriate Federal agencies, the State of Illi-
nois, and the Kaskaskia River Watershed Association. 
(5) REPORT TO CONGRESS.—Not later than 2 
years after the date of enactment of this Act, the Sec-
retary shall transmit to Congress a report containing 
the comprehensive plan. 
(6) ADDITIONAL STUDIES AND ANALYSES.—After 
transmission of a report under paragraph (5), the 
Secretary shall conduct studies and analyses of 
projects related to the comprehensive plan that are 
appropriate and consistent with this subsection. 
(c) GENERAL PROVISIONS.— 
(1) WATER QUALITY.—In carrying out activities 
under this section, the Secretary’s recommendations 
shall be consistent with applicable State water quality 
standards. 
(2) PUBLIC PARTICIPATION.—In developing the 
comprehensive plan under subsection (b), the Sec-
retary shall implement procedures to facilitate public 
participation, including providing advance notice of 
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meetings, providing adequate opportunity for public 
input 
and 
comment, 
maintaining 
appropriate 
records, and making a record of the proceedings of 
meetings available for public inspection. 
(d) CRITICAL PROJECTS AND INITIATIVES.—If the Sec-
retary, in cooperation with appropriate Federal agencies 
and the State of Illinois, determines that a project or initia-
tive for the Kaskaskia River Basin will produce inde-
pendent, immediate, and substantial benefits, the Secretary 
may proceed expeditiously with the implementation of the 
project. 
(e) COORDINATION.—The Secretary shall integrate ac-
tivities carried out under this section with ongoing Federal 
and State programs, projects, and activities, including the 
following: 
(1) Farm programs of the Department of Agri-
culture. 
(2) Conservation Reserve Enhancement Program 
(State of Illinois) and Conservation 2000 Ecosystem 
Program of the Illinois Department of Natural Re-
sources. 
(3) Conservation 2000 Conservation Practices 
Program and the Livestock Management Facilities 
Act administered by the Illinois Department of Agri-
culture. 
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(4) National Buffer Initiative of the Natural Re-
sources Conservation Service. 
(5) Nonpoint source grant program administered 
by the Illinois Environmental Protection Agency. 
(6) Other programs that may be developed by the 
State of Illinois or the Federal Government, or that 
are carried out by non-profit organizations, to carry 
out the objectives of the Kaskaskia River Basin Com-
prehensive Plan. 
(f) IN-KIND SERVICES.—The Secretary may credit the 
cost of in-kind services provided by the non-Federal interest 
for an activity carried out under this section toward not 
more than 80 percent of the non-Federal share of the cost 
of the activity. In-kind services shall include all State funds 
expended on programs that accomplish the goals of this sec-
tion, as determined by the Secretary. The programs may 
include the Kaskaskia River Conservation Reserve Pro-
gram, the Illinois Conservation 2000 Program, the Open 
Lands Trust Fund, and other appropriate programs carried 
out in the Kaskaskia River Basin. 
SEC. 5061. FLOODPLAIN MAPPING, LITTLE CALUMET RIVER, 
CHICAGO, ILLINOIS. 
(a) IN GENERAL.—The Secretary shall provide assist-
ance for a project to develop maps identifying 100- and 
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500-year flood inundation areas along the Little Calumet 
River, Chicago, Illinois. 
(b) REQUIREMENTS.—Maps developed under the 
project shall include hydrologic and hydraulic information 
and shall accurately show the flood inundation of each 
property by flood risk in the floodplain. The maps shall 
be produced in a high resolution format and shall be made 
available to all flood prone areas along the Little Calumet 
River, Chicago, Illinois, in an electronic format. 
(c) PARTICIPATION OF FEMA.—The Secretary and the 
non-Federal interests for the project shall work with the Di-
rector of the Federal Emergency Management Agency to en-
sure the validity of the maps developed under the project 
for flood insurance purposes. 
(d) FORMS
OF ASSISTANCE.—In carrying out the 
project, the Secretary may enter into contracts or coopera-
tive agreements with the non-Federal interests or provide 
reimbursements of project costs. 
(e) FEDERAL SHARE.—The Federal share of the cost 
of the project shall be 50 percent. 
(f) AUTHORIZATION OF APPROPRIATIONS.—There is 
authorized to be appropriated to carry out this section 
$2,000,000. 
SEC. 5062. PROMONTORY POINT, LAKE MICHIGAN, ILLINOIS. 
(a) REVIEW.— 
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(1) IN GENERAL.—The Secretary may carry out 
a third-party review of the Promontory Point project 
along the Chicago Shoreline, Chicago, Illinois, at a 
cost not to exceed $450,000. 
(2) JOINT
REVIEW.—The Buffalo and Seattle 
districts of the Corps of Engineers shall jointly con-
duct the review. 
(3) STANDARDS.—The review shall be based on 
the standards under part 68 of title 36, Code of Fed-
eral Regulations, for implementation by the non-Fed-
eral sponsor for the Chicago Shoreline, Chicago, Illi-
nois, project. 
(b) CONTRIBUTIONS.—The Secretary shall accept from 
a State or political subdivision of a State voluntarily con-
tributed funds to initiate the third-party review under sub-
section (a). 
(c) EFFECT OF SECTION.—Nothing in this section af-
fects the authorization for the project for the Chicago Shore-
line, Chicago, Illinois. 
SEC. 5063. BURNS WATERWAY HARBOR, INDIANA. 
The Secretary shall conduct a study of shoaling in the 
vicinity of Burns Waterway Harbor, Indiana, to determine 
if the shoaling is the result of a Federal navigation project, 
and, if the Secretary determines that the shoaling is the 
result of a Federal navigation project, the Secretary shall 
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carry out a project to mitigate the shoaling under section 
111 of the River and Harbor Act of 1968 (33 U.S.C. 426). 
SEC. 5064. CALUMET REGION, INDIANA. 
Section 219(f)(12) of the Water Resources Development 
Act of 1992 (113 Stat. 335; 117 Stat. 1843) is amended— 
(1) by striking ‘‘$30,000,000’’ and inserting the 
following: 
‘‘(A) IN GENERAL.—$100,000,000’’; 
(2) by adding at the end the following: 
‘‘(B) CREDIT.—The Secretary shall credit 
toward the non-Federal share of the cost of the 
project the cost of planning and design work car-
ried out by the non-Federal interest before, on, or 
after the date of the partnership agreement for 
the project if the Secretary determines that the 
work is integral to the project.’’; and 
(3) by aligning the remainder of the text of sub-
paragraph (A) (as designated by paragraph (1) of 
this section) with subparagraph (B) (as added by 
paragraph (2) of this section). 
SEC. 5065. PADUCAH, KENTUCKY. 
The Secretary shall complete a feasibility report for 
rehabilitation of the project for flood damage reduction, Pa-
ducah, Kentucky, and, if the Secretary determines that the 
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