dataesr/scientific-paragraphs-categorization huggingface dataset:
javafx. tk. quantum. GlassViewEventHandler$MouseEventNotification. run(GlassViewEventHandler. jav at com. sun. javafx. tk. quantum. GlassViewEventHandler$MouseEventNotification. run(GlassViewEventHandler. jav at java. base/java. security. AccessController. doPrivileged(Native Method) at com. sun. javafx. tk. quantum. GlassViewEventHandler. lambda$handleMouseEvent$2(GlassViewEventHandler. j at com. sun. javafx. tk. quantum. QuantumToolkit. runWithoutRenderLock(QuantumToolkit. java:412) at com. sun. javafx. tk. quantum. GlassViewEventHandler. handleMouseEvent(GlassViewEventHandler. java:446) at com. sun. glass. ui. View. handleMouseEvent(View. java:556) at com. sun. glass. ui. View. notifyMouse(View. java:942) at com. sun. glass. ui. win. WinApplication. _runLoop(Native Method) F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 at com.
nio. fs. WindowsFileSystemProvider. readAttributes(WindowsFileSystemProvider. java:198) at java. base/java. nio. file. Files. readAttributes(Files. java:1764) at java. base/java. util. zip. ZipFile$Source. get(ZipFile. java:1259) at java. base/java. util. zip. ZipFile$CleanableResource. (ZipFile. java:733) at java. base/java. util. zip. ZipFile$CleanableResource. get(ZipFile. java:850) at java. base/java. util. zip. ZipFile. (ZipFile. java:248) at java. base/java. util. zip. ZipFile. (ZipFile. java:177) at java. base/java. util. zip. ZipFile. (ZipFile. java:191) at fr. univ_nantes. codex_processor. core. measure. MeasureProcessor. run(MeasureProcessor. java:43) at fr. univ_nantes. codex_processor. gui. DatasetMeasureProcessor. run(DatasetMeasureProcessor. java:45) at fr. univ_nantes. codex_processor.
dispatchEvent(BasicEventDispatcher. java:56) at com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 com. sun. javafx. event. BasicEventDispatcher. dispatchEvent(BasicEventDispatcher. java:56) at com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. EventUtil. fireEventImpl(EventUtil. java:74) at com. sun. javafx. event. EventUtil. fireEvent(EventUtil. java:49) at javafx. event. Event. fireEvent(Event. java:198) at javafx. scene. Node. fireEvent(Node. java:8889) at javafx. scene. control. Button. fire(Button. java:203) at com. sun. javafx. scene. control. behavior. ButtonBehavior. mouseReleased(ButtonBehavior. java:208) at com.
GlassViewEventHandler$MouseEventNotification. run(GlassViewEventHandler. jav at com. sun. javafx. tk. quantum. GlassViewEventHandler$MouseEventNotification. run(GlassViewEventHandler. jav at java. base/java. security. AccessController. doPrivileged(Native Method) at com. sun. javafx. tk. quantum. GlassViewEventHandler. lambda$handleMouseEvent$2(GlassViewEventHandler. j F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 at com. sun. javafx. tk. quantum. QuantumToolkit. runWithoutRenderLock(QuantumToolkit. java:412) at com. sun. javafx. tk. quantum. GlassViewEventHandler. handleMouseEvent(GlassViewEventHandler. java:446) at com. sun. glass. ui. View. handleMouseEvent(View. java:556) at com. sun. glass. ui. View. notifyMouse(View. java:942) at com. sun. glass. ui. win. WinApplication. _runLoop(Native Method) at com.
file. Files. readAttributes(Files. java:1764) at java. base/java. util. zip. ZipFile$Source. get(ZipFile. java:1259) at java. base/java. util. zip. ZipFile$CleanableResource. (ZipFile. java:733) at java. base/java. util. zip. ZipFile$CleanableResource. get(ZipFile. java:850) at java. base/java. util. zip. ZipFile. (ZipFile. java:248) at java. base/java. util. zip. ZipFile. (ZipFile. java:177) at java. base/java. util. zip. ZipFile. (ZipFile. java:191) at fr. univ_nantes. codex_processor. core. measure. MeasureProcessor. run(MeasureProcessor. java:43) at fr. univ_nantes. codex_processor. gui. DatasetMeasureProcessor. run(DatasetMeasureProcessor. java:45) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:160) at fr. univ_nantes. codex_processor. gui. MainController$1.
handle(MainController. java:64) at com. sun. javafx. event. CompositeEventHandler. dispatchBubblingEvent(CompositeEventHandler. java:86) at F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 com. sun. javafx. event. EventHandlerManager. dispatchBubblingEvent(EventHandlerManager. java:234) at com. sun. javafx. event. EventHandlerManager. dispatchBubblingEvent(EventHandlerManager. java:191) at com. sun. javafx. event. CompositeEventDispatcher. dispatchBubblingEvent(CompositeEventDispatcher. java:59 at com. sun. javafx. event. BasicEventDispatcher. dispatchEvent(BasicEventDispatcher. java:58) at com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. BasicEventDispatcher. dispatchEvent(BasicEventDispatcher. java:56) at com.
event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. BasicEventDispatcher. dispatchEvent(BasicEventDispatcher. java:56) at F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. EventUtil. fireEventImpl(EventUtil. java:74) at com. sun. javafx. event. EventUtil. fireEvent(EventUtil. java:54) at javafx. event. Event. fireEvent(Event. java:198) at javafx. scene. Scene$MouseHandler. process(Scene. java:3856) at javafx. scene. Scene. processMouseEvent(Scene. java:1851) at javafx. scene. Scene$ScenePeerListener. mouseEvent(Scene. java:2584) at com. sun. javafx. tk. quantum. GlassViewEventHandler$MouseEventNotification. run(GlassViewEventHandler.
base/java. nio. file. Files. readAttributes(Files. java:1764) at java. base/java. util. zip. ZipFile$Source. get(ZipFile. java:1259) at java. base/java. util. zip. ZipFile$CleanableResource. (ZipFile. java:733) at java. base/java. util. zip. ZipFile$CleanableResource. get(ZipFile. java:850) at java. base/java. util. zip. ZipFile. (ZipFile. java:248) at java. base/java. util. zip. ZipFile. (ZipFile. java:177) at java. base/java. util. zip. ZipFile. (ZipFile. java:191) at fr. univ_nantes. codex_processor. core. measure. MeasureProcessor. run(MeasureProcessor. java:43) F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 at fr. univ_nantes. codex_processor. gui. DatasetMeasureProcessor. run(DatasetMeasureProcessor. java:45) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController.
readAttributes(Files. java:1764) at java. base/java. util. zip. ZipFile$Source. get(ZipFile. java:1259) F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 at java. base/java. util. zip. ZipFile$CleanableResource. (ZipFile. java:733) at java. base/java. util. zip. ZipFile$CleanableResource. get(ZipFile. java:850) at java. base/java. util. zip. ZipFile. (ZipFile. java:248) at java. base/java. util. zip. ZipFile. (ZipFile. java:177) at java. base/java. util. zip. ZipFile. (ZipFile. java:191) at fr. univ_nantes. codex_processor. core. measure. MeasureProcessor. run(MeasureProcessor. java:43) at fr. univ_nantes. codex_processor. gui. DatasetMeasureProcessor. run(DatasetMeasureProcessor. java:45) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:160) at fr.
lang. Thread. run(Thread. java:829) java. nio. file. NoSuchFileException: C:\Users\IT-WL-annkl878\Documents\notes\Codex_Analysis\test_multiplxProcessor\out\rois_cy002_ch1. zip at java. base/sun. nio. fs. WindowsException. translateToIOException(WindowsException. java:85) at java. base/sun. nio. fs. WindowsException. rethrowAsIOException(WindowsException. java:103) at java. base/sun. nio. fs. WindowsException. rethrowAsIOException(WindowsException. java:108) at Page 232 of 258 F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 java. base/sun. nio. fs. WindowsFileAttributeViews$Basic. readAttributes(WindowsFileAttributeViews. java:53) at java. base/sun. nio. fs. WindowsFileAttributeViews$Basic. readAttributes(WindowsFileAttributeViews. java:38) at java. base/sun. nio. fs. WindowsFileSystemProvider.
readAttributes(WindowsFileSystemProvider. java:198) at java. base/java. nio. file. Files. readAttributes(Files. java:1764) at java. base/java. util. zip. ZipFile$Source. get(ZipFile. java:1259) at java. base/java. util. zip. ZipFile$CleanableResource. (ZipFile. java:733) at java. base/java. util. zip. ZipFile$CleanableResource. get(ZipFile. java:850) at java. base/java. util. zip. ZipFile. (ZipFile. java:248) at java. base/java. util. zip. ZipFile. (ZipFile. java:177) at java. base/java. util. zip. ZipFile. (ZipFile. java:191) at fr. univ_nantes. codex_processor. core. measure. MeasureProcessor. run(MeasureProcessor. java:43) at fr. univ_nantes. codex_processor. gui. DatasetMeasureProcessor. run(DatasetMeasureProcessor. java:45) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController.
java:829) java. nio. file. NoSuchFileException: C:\Users\IT-WL-annkl878\Documents\notes\Codex_Analysis\test_multiplxProcessor\out\rois_cy002_ch1. zip F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 at java. base/sun. nio. fs. WindowsException. translateToIOException(WindowsException. java:85) at java. base/sun. nio. fs. WindowsException. rethrowAsIOException(WindowsException. java:103) at java. base/sun. nio. fs. WindowsException. rethrowAsIOException(WindowsException. java:108) at java. base/sun. nio. fs. WindowsFileAttributeViews$Basic. readAttributes(WindowsFileAttributeViews. java:53) at java. base/sun. nio. fs. WindowsFileAttributeViews$Basic. readAttributes(WindowsFileAttributeViews. java:38) at java. base/sun. nio. fs. WindowsFileSystemProvider. readAttributes(WindowsFileSystemProvider.
java:198) at java. base/java. nio. file. Files. readAttributes(Files. java:1764) at java. base/java. util. zip. ZipFile$Source. get(ZipFile. java:1259) at java. base/java. util. zip. ZipFile$CleanableResource. (ZipFile. java:733) at java. base/java. util. zip. ZipFile$CleanableResource. get(ZipFile. java:850) at java. base/java. util. zip. ZipFile. (ZipFile. java:248) at java. base/java. util. zip. ZipFile. (ZipFile. java:177) at java. base/java. util. zip. ZipFile. (ZipFile. java:191) at fr. univ_nantes. codex_processor. core. measure. MeasureProcessor. run(MeasureProcessor. java:43) at fr. univ_nantes. codex_processor. gui. DatasetMeasureProcessor. run(DatasetMeasureProcessor. java:45) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:160) at fr. univ_nantes.
event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. BasicEventDispatcher. dispatchEvent(BasicEventDispatcher. java:56) at com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. EventUtil. fireEventImpl(EventUtil. java:74) F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 at com. sun. javafx. event. EventUtil. fireEvent(EventUtil. java:49) at javafx. event. Event. fireEvent(Event. java:198) at javafx. scene. Node. fireEvent(Node. java:8889) at javafx. scene. control. Button. fire(Button. java:203) at com. sun. javafx. scene. control. behavior. ButtonBehavior. mouseReleased(ButtonBehavior. java:208) at com. sun. javafx. scene. control. inputmap. InputMap. handle(InputMap.
jav F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 at java. base/java. security. AccessController. doPrivileged(Native Method) at com. sun. javafx. tk. quantum. GlassViewEventHandler. lambda$handleMouseEvent$2(GlassViewEventHandler. j at com. sun. javafx. tk. quantum. QuantumToolkit. runWithoutRenderLock(QuantumToolkit. java:412) at com. sun. javafx. tk. quantum. GlassViewEventHandler. handleMouseEvent(GlassViewEventHandler. java:446) at com. sun. glass. ui. View. handleMouseEvent(View. java:556) at com. sun. glass. ui. View. notifyMouse(View. java:942) at com. sun. glass. ui. win. WinApplication. _runLoop(Native Method) at com. sun. glass. ui. win. WinApplication. lambda$runLoop$3(WinApplication. java:174) at java. base/java. lang. Thread. run(Thread. java:829) java. nio. file. NoSuchFileException: C:\Users\IT-WL-annkl878\Documents\notes\Codex_Analysis\test_multiplxProcessor\out\rois_cy002_ch1.
(ZipFile. java:733) at java. base/java. util. zip. ZipFile$CleanableResource. get(ZipFile. java:850) at java. base/java. util. zip. ZipFile. (ZipFile. java:248) at java. base/java. util. zip. ZipFile. (ZipFile. java:177) at java. base/java. util. zip. ZipFile. (ZipFile. java:191) at fr. univ_nantes. codex_processor. core. measure. MeasureProcessor. run(MeasureProcessor. java:43) at fr. univ_nantes. codex_processor. gui. DatasetMeasureProcessor. run(DatasetMeasureProcessor. java:45) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:160) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:64) at com. sun. javafx. event. CompositeEventHandler. dispatchBubblingEvent(CompositeEventHandler. java:86) at com. sun. javafx. event.
tablesaw. api. Table. columnIndex(Table. java:437) at tech. tablesaw. table. Relation. doubleColumn(Relation. java:379) at fr. univ_nantes. codex_processor. gui. DatasetMeasureProcessor. run(DatasetMeasureProcessor. java:62) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:160) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:64) at com. sun. javafx. event. CompositeEventHandler. dispatchBubblingEvent(CompositeEventHandler. java:86) at com. sun. javafx. event. EventHandlerManager. dispatchBubblingEvent(EventHandlerManager. java:234) at com. sun. javafx. event. EventHandlerManager. dispatchBubblingEvent(EventHandlerManager. java:191) at com. sun. javafx. event. CompositeEventDispatcher. dispatchBubblingEvent(CompositeEventDispatcher.
java:59 at com. sun. javafx. event. BasicEventDispatcher. dispatchEvent(BasicEventDispatcher. java:58) at com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. BasicEventDispatcher. dispatchEvent(BasicEventDispatcher. java:56) at com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. BasicEventDispatcher. dispatchEvent(BasicEventDispatcher. java:56) at F1000Research 2022, 11:1121 Last updated: 06 JUL 2023 com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. EventUtil. fireEventImpl(EventUtil. java:74) at com. sun. javafx. event. EventUtil. fireEvent(EventUtil. java:49) at javafx. event.
Note that the path under the experiment json has no importance, but the raw data should be at the same level. • channelNames. txt contains the list of fluorescent reporters used. Blank means no reporters. Licence: Creative Commons Attribution 4. 0 International. Software availability • Software v 1. 0 compiled for Windows available from: https://doi. org/10. 5281/zenodo. 6773173 • Source code available from: https://gitlab. in2p3. fr/micropi-cell/multiplexprocessor • Archived source code at time of publication: https:// gitlab. in2p3. fr/micropicell/multiplexprocessor/-/tree/ 7eaa31f285f255f5f1f371bad58003e8eaa94d33 • License: GNU GENERAL PUBLIC LICENSE Version 3. Fig 1A: z-stacks should be indicated by either drawing an axis or visualizing bigger steps Minor comments to the text: between slices.
○ Stitching: How big is the typical translation needed and how much is a typical overlap? ○ Fig. 6: Show B, C, J, and L with comparable adjusted brightness/contrast in order to better inspect the contrast. ○ Registration/corrections: Eventually, it could help to include a table with all cycles and recordings for displaying which images were used for registration, etc. ○ Post-processing/Fig 3C: I suggest including a short description of how cell classification was done. ○ Tool: I run the binary version from https://zenodo. org/record/6773173#. Y1KHQWdBxD8 on the example data, starting with the deconvolved data. com. sun. javafx. event. BasicEventDispatcher. dispatchEvent(BasicEventDispatcher. java:56) at com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com.
DelegatingConstructorAccessorImpl. newInstance(DelegatingConstructorAccess at java. base/java. lang. reflect. Constructor. newInstance(Constructor. java:490) at java. base/java. util. concurrent. ForkJoinTask. getThrowableException(ForkJoinTask. java:603). 49 more Caused by: java. lang. OutOfMemoryError: Java heap space java. util. concurrent. ExecutionException: java. lang. OutOfMemoryError at java. base/java. util. concurrent. ForkJoinTask. get(ForkJoinTask. java:1006) at fr. univ_nantes. codex_processor. gui. DatasetExtendedDepthOfFieldProcessor. run(DatasetExtendedDepthOfFi at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:96) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:64) at com. sun. javafx. event. CompositeEventHandler.
util. concurrent. ForkJoinTask. get(ForkJoinTask. java:1006) at fr. univ_nantes. codex_processor. gui. DatasetExtendedDepthOfFieldProcessor. run(DatasetExtendedDepthOfFi at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:96) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:64) at com. sun. javafx. event. CompositeEventHandler. dispatchBubblingEvent(CompositeEventHandler. java:86) at com. sun. javafx. event. EventHandlerManager. dispatchBubblingEvent(EventHandlerManager. java:234) at com. sun. javafx. event. EventHandlerManager. dispatchBubblingEvent(EventHandlerManager. java:191) at com. sun. javafx. event. CompositeEventDispatcher. dispatchBubblingEvent(CompositeEventDispatcher. java:59 at com. sun. javafx. event.
base/java. lang. reflect. Constructor. newInstance(Constructor. java:490) at java. base/java. util. concurrent. ForkJoinTask. getThrowableException(ForkJoinTask. java:603). 49 more Caused by: java. lang. OutOfMemoryError: Java heap space at wavelets. ImageAccess. (ImageAccess. java:165) at wavelets. ImageAccess. duplicate(ImageAccess. java:294) at wavelets. ComplexWavelet. analysis(ComplexWavelet. java:54) at edf. EdfComplexWavelets. process(EdfComplexWavelets. java:91) at fr. univ_nantes. codex_processor. core. extended_depth_of_field. ExtendedDepthOfField. process(ExtendedDept at fr. univ_nantes. codex_processor. core. extended_depth_of_field. ExtendedDepthOfFieldProcessor. run(Extended at fr. univ_nantes. codex_processor. gui. DatasetExtendedDepthOfFieldProcessor. lambda$run$0(DatasetExtende at fr.
univ_nantes. codex_processor. gui. DatasetExtendedDepthOfFieldProcessor$$Lambda$408/0x00000008003 Source) at java. base/java. util. concurrent. ForkJoinTask$AdaptedRunnableAction. exec(ForkJoinTask. java:1407) at java. base/java. util. concurrent. ForkJoinTask. doExec(ForkJoinTask. java:290) at java. base/java. util. concurrent. ForkJoinPool$WorkQueue. topLevelExec(ForkJoinPool. java:1020) at java. base/java. util. concurrent. ForkJoinPool. scan(ForkJoinPool. java:1656) at java. base/java. util. concurrent. ForkJoinPool. runWorker(ForkJoinPool. java:1594) at java. base/java. util. concurrent. ForkJoinWorkerThread. run(ForkJoinWorkerThread. java:183) java. util. concurrent. ExecutionException: java. lang. OutOfMemoryError at java. base/java. util. concurrent. ForkJoinTask. get(ForkJoinTask.
java:1006) at fr. univ_nantes. codex_processor. gui. DatasetExtendedDepthOfFieldProcessor. run(DatasetExtendedDepthOfFi at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:96) at fr. univ_nantes. codex_processor. gui. MainController$1. handle(MainController. java:64) at com. sun. javafx. event. CompositeEventHandler. dispatchBubblingEvent(CompositeEventHandler. java:86) at com. sun. javafx. event. EventHandlerManager. dispatchBubblingEvent(EventHandlerManager. java:234) at com. sun. javafx. event. EventHandlerManager. dispatchBubblingEvent(EventHandlerManager. java:191) at com. sun. javafx. event. at com. sun. javafx. event. EventDispatchChainImpl. dispatchEvent(EventDispatchChainImpl. java:114) at com. sun. javafx. event. EventUtil. fireEventImpl(EventUtil.
scene. Scene. processMouseEvent(Scene. java:1851) at javafx. scene. Scene$ScenePeerListener. mouseEvent(Scene. java:2584) OutOfMemoryError: Java heap space at wavelets. ImageAccess. (ImageAccess. java:165) at wavelets. ImageAccess. duplicate(ImageAccess. java:294) at wavelets. ComplexWavelet. analysis(ComplexWavelet. java:54) at edf. EdfComplexWavelets. process(EdfComplexWavelets. java:91) at fr. univ_nantes. codex_processor. core. extended_depth_of_field. ExtendedDepthOfField. process(ExtendedDept at fr. univ_nantes. codex_processor. core. extended_depth_of_field. ExtendedDepthOfFieldProcessor. run(Extended at fr. univ_nantes. codex_processor. gui. DatasetExtendedDepthOfFieldProcessor. lambda$run$0(DatasetExtende at fr. univ_nantes. codex_processor. gui. DatasetExtendedDepthOfFieldProcessor$$Lambda$408/0x00000008003 Source) at java.
Methods: We collected data from the Isere cancer registry in France of all invasive breast cancers from January 1990 to December 2018. The standardized incidence rate was calculated for four age groups (< 40 years, 40-49 years, 50-74 years, ≥ 75 years) for this period. The 10-year relative survival was evaluated for each age group age for two periods (1990-1999 and 2000-2008). From 2011 to 2013, we analyzed the incidence and 5-year relative survival by tumor subtype (triple negative, luminal, HER2 amplified) for each age group. Results: A total of 23,703 cases were selected, including 1343 young women (< 40 years). The incidence of invasive breast cancer increased annually by 0,8% (95% CI 0,7; 1) in all age groups combined from 1990 to 2018. The highest incidence increase is found among young women, by 2,1% annually (95% CI 1,3; 2,8).
Data collection Data were collected by the Isère Cancer Registry, which collects incident cancer cases from different sources including histopathology laboratories, oncology departments, social security offices, and medical databases. The following variables were used: dates of birth and diagnosis as well as cancer site and tumor morphology according to the International Classification of Disease for Oncology, ICD-O. From 2011, supplementary clinical data were collected for each case: the hormone receptor (estrogen receptor (ER), progesterone receptor (PR)) and the human epidermal growth factor receptor type 2 (HER2) status of the tumor. Therefore, we defined four groups according to the tumor subtype: luminal (RH +), triple negative (RHand Her2-), Her 2 amplified (Her2 + , RH-), and patients with no information on tumor subtype.
Separate Poisson regressions were used to model incidence rates for luminal, Her2, and triple-negative BC during the 2011-2018 diagnostic period. We computed 10-year relative survival rates for each age group for cases diagnosed during the 1990-1999 and during the 2000-2008 periods. Relative survival estimated survival rates associated with mortality from breast cancer by considering time from diagnostic to allcause death during a 10-year follow-up and by incorporating background mortality, which was obtained from national life tables. Indeed, in population-based studies, the estimation of survival rates using cause of death data can be problematic because the cause of death can be unreliable and treatment-related deaths are not always attributed to the initial disease. Relative survival avoids these problems by considering the total mortality rate as a sum of the expected mortality rate (obtained from national life tables matched on age, sex, and year) and the excess mortality rate associated with BC.