, 2010 Poux and Douzery, 2004 Adkins et al. , 2001 Lecompte et al. , 2008 Lecompte et al. , 2008 this study this study this study this study this study this study this study Page 40 of 46 Pogonomys_sylvestris Rattus_tanezumi Acomys_ignitus NA DQ191488 AJ233951 GQ405365 DQ191515 EU349846 GQ405389 GQ405393 DQ019049 AY295008 NA NA Mus division Uromys division Xeromys division Lorentzimys division Micromys division cytochrome b apoenzyme -MUSEUM SPECIMENS, fragment I Mus(Coelomys)_crociduroides Mus_booduga Melomys_rufescens Melomys_cervinipes Paramelomys_levipes Solomys_salebrosus Uromys_caudimaculatus Leptomys_elegans Pseudohydromys_ellermani Xeromys_myoides Lorentzimys_nouhuysi Micromys_minutus Rattus_tiomanicus Rattus_everetti Limnomys_bryophilus Limnomys_sibuanus Tarsomys_apoensis Diplothrix_legata Rattus_colletti Rattus_fuscipes Acomys_russatus Lophiomys_imhausi cytochrome b apoenzyme -MUSEUM SPECIMENS, fragment II Rattus_giluwensis Rattus_leucopus Unavailable in GenBank Rattini Lophiomyinae cytbI L14723 cytbI-rev cytbII cytbII-fw incertae sedis Mus_cervicolor Mus_cookii Mus_terricolor Micromys_minutus_72_(MK0509_BZ0 2) Rattus_lutreolus Echiothrix division Echiothrix Rattus_morotaiensis_33228 Hadromys division Hadromys Micromys_minutus_73_(MK0509_BZ0 7) Rattus_morotaiensis_33231 Micromys division Haeromys Malpaisomys_insularis Maxomys division Maxomys_bartelsii Rattus_novaeguineae Vernaya Mus_pahari Maxomys_surifer Rattus_niobe Pithecheir division Eropeplus Mus(Nannomys)_minutoides Mus(Pyromys)_platythrix Mus_musculus Hydromyini Micromys division Chiropodomys_gliroides_M32332 Chiropodomys_gliroides_AMCC10151 ACCAATGACATGAAAAATCATCGTT AJ698878 AJ698894 AM910964 AB125761 AB125796 NA C o p y EU349764 EU349860 EU349816 EU349690 NA NA KC953399 EU349772 EU349867 EU349821 EU349689 EU349785 EU349872 EU349827 EU349691 EU349789 EU349875 DQ019079 NA EU349753 EU349852 EU349807 EU349697 EU349763 EU349858 EU349814 EU349695 EU349790 EU349877 EU349830 EU349696 EU349755 GQ405363 GQ405383 EU349680 EU349765 EU349862 EU349818 EU349664 C o p y NA KC953449 KC953320 NA DQ191485 DQ191513 GQ405390 NA DQ191479 DQ191508 GQ405380 NA DQ191480 DQ191509 GQ405381 NA DQ191491 DQ191516 GQ405395 NA AB033696 AB033706 EU349799 EU349670 NA HQ334598 NA NA EF186436 HQ334623 NA C o p NA FM162053 FM162071 NA NA KC953389 NA NA C 60°C TCAGAARGATATTTGTCCTCATGG o ATAGCAACYGCATTCATAGG 50°C p NA NA HQ334606 NA HQ334419 EU349781 HQ334615 y y EU349825 EU349672 NA AB125766 AB125799 NA NA AB125769 KC953404 KC953279 NA AB125810 NA HM217360 GU570661 HQ334613 NA NA NA NA NA NA HM217598 This_study This_study KF164232 KF164254 KF164272 NA NA NA NA NA HM217361 HM217599 This_study This_study KF164233 KF164257 KF164273 NA NA NA NA NA NA JN418214 JN418213 NA EU349762 EU349857 DQ019066 EU349666 NA KC953447 NA NA NA NA KC953319 KC953210 NA EU349767 EU349864 NA HM217406 HM217644 DQ019065 KC953190 NA HQ334580 NA NA NA NA NA NA NA AY057816 AJ875086 NA NA AJ698880 AJ698895 NA NA NM015745 M33324 EU349657 This_study This_study Dacnomys_millardi JQ755896 JQ755960 DQ019058 KC953169 Rattus_verecundus NA HQ334589 NA Thamnomys NA NA NA NA KC953211 This_study This_study Crunomys_suncoides DQ191478 DQ191507 NA Dacnomys division Chiromyscus_chiropus EU349739 EU349840 EU349796 EU349665 Rattus_tunneyi EF186517 HQ334579 NA Thallomys * NA NA NA NA DQ381929** NA Rattus_steini NA HQ334588 NA NA Arvicanthini Dasymys division Dephomys NA NA NA NA NA Maxomys_whiteheadi EU292150 AY326094 NA NA Crunomys division Crunomys_melanius DQ191477 DQ191506 GQ405379 NA Rattus_praetor DQ191487 DQ191514 GQ405392 NA Rattus_sordidus NC014871 HQ334881 NA HQ334411 Lenomys NA NA NA NA Pithecheirops NA NA NA NA ZSC submitted manuscript 472 bp 454 bp this study this study 1 Leopoldamys_edwardsi Rattus_villosissimus Lamottemys NA AJ698881 EU349783 NA EU349841 AJ698897 HQ334576 NA EU349797 EU349674 NA NA EU349826 EU349673 NA NA Otomyini Chiropodomys_major_A48 Leopoldamys_herberti Bandicota_bengalensis Subfamily Otomyinae Myotomys NA JQ755848 AM408340 JN574903*** This_study JQ755958 AM408331 AM910945 This_study This_study NA NA NA NA NA NA Millardini Millardia division Chiropodomys_sp_R4959 Leopoldamys_neilli Bandicota_indica Diomys This_study HM217462 HM217408 NA This_study HM217699 HM217646 NA This_study This_study NA NA NA NA NA NA Chiropodomys_sp_R5238 Leopoldamys_revertens Bandicota_savilei Madromys This_study JQ173160 HM217387 NA This_study JX173169 HM217625 NA This_study This_study NA NA NA NA NA NA Praomyini Chrotomys division Colomys division Apomys_datae Leopoldamys_sabanus Nesokia_indica Nilopegamys AY324464 HM217439 AF160605 NA EU349836 HM217676 DQ019063 KC953186 KC878169 KC953158 NA NA NA NA NA NA Phloeomyini Apomys_hylocoetes Niviventer_cremoriventer Batomys_granti_USNM_458914 EU349735 EF053030 AY324459 KF928333** KC953357 DQ019067 DQ191496 KF928334** AY294915 AY295000 DQ019067 KC953198 AY294917 AY295002 Murini Mus division Apomys_insignis Niviventer_culteratus Batomys_salomonseni Muriculus AY324470 NA DQ191471 * DQ191492 KC953418 DQ191497 * NA DQ019068 KC953199 NA NA NA NA NA ZSC submitted manuscript ZSC submitted manuscript ZSC submitted manuscript ZSC submitted manuscript *** During the reviewing process of this article, sequences of Muriculus as well as those of Thallomys and Myotomys were deposited in the public databank.