Title: Fast and flexible bacterial genomic epidemiology with PopPUNK
Authors: orcid: http://orcid.org/0000-0001-5360-1254
last_name: Lees
first_name: John A.
name: John A. Lees
corresponding: yes
affiliations: label: 1
institution: Department of Microbiology, New York University School of Medicine
country: USA
name: Department of Microbiology, New York University School of Medicine , 10016, USA
orcid: http://orcid.org/0000-0003-1512-6194
last_name: Harris
first_name: Simon R.
name: Simon R. Harris
affiliations: label: 2
institution: Parasites and Microbes, Wellcome Sanger Institute
country: UK
name: Parasites and Microbes, Wellcome Sanger Institute , Hinxton, CB10 1SA, UK
orcid: http://orcid.org/0000-0003-4397-2224
last_name: Tonkin-Hill
first_name: Gerry
name: Gerry Tonkin-Hill
affiliations: label: 2
institution: Parasites and Microbes, Wellcome Sanger Institute
country: UK
name: Parasites and Microbes, Wellcome Sanger Institute , Hinxton, CB10 1SA, UK
orcid: http://orcid.org/0000-0002-7993-3051
last_name: Gladstone
first_name: Rebecca A.
name: Rebecca A. Gladstone
affiliations: label: 2
institution: Parasites and Microbes, Wellcome Sanger Institute
country: UK
name: Parasites and Microbes, Wellcome Sanger Institute , Hinxton, CB10 1SA, UK
last_name: Lo
first_name: Stephanie
name: Stephanie Lo
affiliations: label: 2
institution: Parasites and Microbes, Wellcome Sanger Institute
country: UK
name: Parasites and Microbes, Wellcome Sanger Institute , Hinxton, CB10 1SA, UK
orcid: http://orcid.org/0000-0001-7168-8090
last_name: Weiser
first_name: Jeffrey N.
name: Jeffrey N. Weiser
affiliations: label: 1
institution: Department of Microbiology, New York University School of Medicine
country: USA
name: Department of Microbiology, New York University School of Medicine , 10016, USA
orcid: http://orcid.org/0000-0002-7752-1942
last_name: Corander
first_name: Jukka
name: Jukka Corander
affiliations: label: 2
institution: Parasites and Microbes, Wellcome Sanger Institute
country: UK
name: Parasites and Microbes, Wellcome Sanger Institute , Hinxton, CB10 1SA, UK
label: 3
institution: Department of Biostatistics, University of Oslo
country: Norway
name: Department of Biostatistics, University of Oslo , 0372 Oslo, Norway
label: 4
institution: Helsinki Institute of Information Technology, Department of Mathematics and Statistics, University of Helsinki
country: Finland
name: Helsinki Institute of Information Technology, Department of Mathematics and Statistics, University of Helsinki , 00014 Helsinki, Finland
last_name: Bentley
first_name: Stephen D.
name: Stephen D. Bentley
affiliations: label: 2
institution: Parasites and Microbes, Wellcome Sanger Institute
country: UK
name: Parasites and Microbes, Wellcome Sanger Institute , Hinxton, CB10 1SA, UK
orcid: http://orcid.org/0000-0001-6303-8768
last_name: Croucher
first_name: Nicholas J.
name: Nicholas J. Croucher
corresponding: yes
affiliations: label: 5
institution: MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London
country: UK
name: MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London , London, W2 1PG, UK
Affiliations: label: 1
institution: Department of Microbiology, New York University School of Medicine
country: USA
name: Department of Microbiology, New York University School of Medicine , 10016, USA
label: 2
institution: Parasites and Microbes, Wellcome Sanger Institute
country: UK
name: Parasites and Microbes, Wellcome Sanger Institute , Hinxton, CB10 1SA, UK
label: 3
institution: Department of Biostatistics, University of Oslo
country: Norway
name: Department of Biostatistics, University of Oslo , 0372 Oslo, Norway
label: 4
institution: Helsinki Institute of Information Technology, Department of Mathematics and Statistics, University of Helsinki
country: Finland
name: Helsinki Institute of Information Technology, Department of Mathematics and Statistics, University of Helsinki , 00014 Helsinki, Finland
label: 5
institution: MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London
country: UK
name: MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, Imperial College London , London, W2 1PG, UK
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018