Title: Population genomics of Cryptococcus neoformans var. grubii reveals new biogeographic relationships and finely maps hybridization
Authors: orcid: http://orcid.org/0000-0002-1338-7860
last_name: Rhodes
first_name: Johanna
name: Johanna Rhodes
affiliations: label: 1
institution: Department of Infectious Disease Epidemiology, Imperial College London
country: United Kingdom
name: Department of Infectious Disease Epidemiology, Imperial College London , London, W2 1PG United Kingdom
notes: These authors contributed equally to this work
orcid: http://orcid.org/0000-0002-3160-4734
last_name: Desjardins
first_name: Christopher A.
name: Christopher A. Desjardins
affiliations: label: 2
institution: The Broad Institute of MIT and Harvard, Cambridge
country: USA
name: The Broad Institute of MIT and Harvard, Cambridge , Massachusetts 02142, USA
notes: These authors contributed equally to this work
last_name: Sykes
first_name: Sean M.
name: Sean M. Sykes
affiliations: label: 2
institution: The Broad Institute of MIT and Harvard, Cambridge
country: USA
name: The Broad Institute of MIT and Harvard, Cambridge , Massachusetts 02142, USA
orcid: http://orcid.org/0000-0002-4740-3187
last_name: Beale
first_name: Mathew A.
name: Mathew A. Beale
affiliations: label: 1
institution: Department of Infectious Disease Epidemiology, Imperial College London
country: United Kingdom
name: Department of Infectious Disease Epidemiology, Imperial College London , London, W2 1PG United Kingdom
label: 3
institution: Institute of Infection and Immunity, St. George’s University London
country: United Kingdom
name: Institute of Infection and Immunity, St. George’s University London , London WC1E 6BT, United Kingdom
label: 4
institution: Wellcome Trust Sanger Institute
country: United Kingdom
name: Wellcome Trust Sanger Institute , Wellcome Genome Campus, Cambridge, United Kingdom
last_name: Vanhove
first_name: Mathieu
name: Mathieu Vanhove
affiliations: label: 1
institution: Department of Infectious Disease Epidemiology, Imperial College London
country: United Kingdom
name: Department of Infectious Disease Epidemiology, Imperial College London , London, W2 1PG United Kingdom
last_name: Sakthikumar
first_name: Sharadha
name: Sharadha Sakthikumar
affiliations: label: 2
institution: The Broad Institute of MIT and Harvard, Cambridge
country: USA
name: The Broad Institute of MIT and Harvard, Cambridge , Massachusetts 02142, USA
last_name: Chen
first_name: Yuan
name: Yuan Chen
affiliations: label: 5
institution: Division of Infectious Diseases, Department of Medicine, Duke University Medical Center
country: USA
name: Division of Infectious Diseases, Department of Medicine, Duke University Medical Center , Durham, North Carolina 27710, USA
last_name: Gujja
first_name: Sharvari
name: Sharvari Gujja
affiliations: label: 2
institution: The Broad Institute of MIT and Harvard, Cambridge
country: USA
name: The Broad Institute of MIT and Harvard, Cambridge , Massachusetts 02142, USA
last_name: Saif
first_name: Sakina
name: Sakina Saif
affiliations: label: 2
institution: The Broad Institute of MIT and Harvard, Cambridge
country: USA
name: The Broad Institute of MIT and Harvard, Cambridge , Massachusetts 02142, USA
orcid: http://orcid.org/0000-0002-2028-7462
last_name: Chowdhary
first_name: Anuradha
name: Anuradha Chowdhary
affiliations: label: 6
institution: Department of Medical Mycology, Vallabhbhai Patel Chest Institute, University of Delhi
country: India
name: Department of Medical Mycology, Vallabhbhai Patel Chest Institute, University of Delhi , Delhi 110007, India
orcid: http://orcid.org/0000-0002-5311-6213
last_name: Lawson
first_name: Daniel John
name: Daniel John Lawson
affiliations: label: 7
institution: Integrative Epidemiology Unit, School of Social and Community Medicine, University of Bristol
country: United Kingdom
name: Integrative Epidemiology Unit, School of Social and Community Medicine, University of Bristol , Bristol BS8 1TH, United Kingdom
last_name: Ponzio
first_name: Vinicius
name: Vinicius Ponzio
affiliations: label: 8
institution: Division of Infectious Diseases of the Federal University of São Paulo-UNIFESP
country: Brazil
name: Division of Infectious Diseases of the Federal University of São Paulo-UNIFESP , São Paulo 04039-032, Brazil
last_name: Colombo
first_name: Arnaldo L.
name: Arnaldo L. Colombo
affiliations: label: 8
institution: Division of Infectious Diseases of the Federal University of São Paulo-UNIFESP
country: Brazil
name: Division of Infectious Diseases of the Federal University of São Paulo-UNIFESP , São Paulo 04039-032, Brazil
orcid: http://orcid.org/0000-0001-9933-8340
last_name: Meyer
first_name: Wieland
name: Wieland Meyer
affiliations: label: 9
institution: Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Sydney Medical School-Westmead Hospital, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead Institute for Medical Research
country: Australia
name: Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Sydney Medical School-Westmead Hospital, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead Institute for Medical Research , Sydney, Australia
label: 10
institution: Mycology Laboratory, Evandro Chagas National Institute of Infectious Diseases
country: Brazil
name: 10 Mycology Laboratory, Evandro Chagas National Institute of Infectious Diseases , Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
last_name: Engelthaler
first_name: David M.
name: David M. Engelthaler
affiliations: label: 11
institution: TGen North, Translational Genomics Research Institute
country: USA
name: 11 TGen North, Translational Genomics Research Institute , Flagstaff, Arizona, USA
orcid: http://orcid.org/0000-0002-5622-1916
last_name: Hagen
first_name: Ferry
name: Ferry Hagen
affiliations: label: 12
institution: Department of Medical Microbiology and Infectious Diseases
country: The Netherlands
name: 12 Department of Medical Microbiology and Infectious Diseases , Canisius-Wilhelmina Hospital, Nijmegen, The Netherlands
last_name: Illnait-Zaragozi
first_name: Maria Teresa
name: Maria Teresa Illnait-Zaragozi
affiliations: label: 13
institution: Departamento Bacteriología-Micologia, Centro de Investigación, Diagnóstico y Referencia
name: 13 Departamento Bacteriología-Micologia, Centro de Investigación, Diagnóstico y Referencia , Instituto de Medicina Tropical Pedro Kourí La Habana, Cuba
orcid: http://orcid.org/0000-0001-9726-3082
last_name: Alanio
first_name: Alexandre
name: Alexandre Alanio
affiliations: label: 14
institution: Laboratoire de Parasitologie-Mycologie, AP-HP, Groupe Hospitalier Saint-Louis-Lariboisière-Fernand-WidalParis, France; Université Paris Diderot, Sorbonne Paris CitéParis, France; Unité de Mycologie Moléculaire
country: France
name: 14 Laboratoire de Parasitologie-Mycologie, AP-HP, Groupe Hospitalier Saint-Louis-Lariboisière-Fernand-WidalParis, France; Université Paris Diderot, Sorbonne Paris CitéParis, France; Unité de Mycologie Moléculaire , Institut Pasteur, Centre National de la Recherche Scientifique, Centre National de Référence Mycoses Invasives et Antifongiques, URA3012 Paris, France
last_name: Vreulink
first_name: Jo-Marie
name: Jo-Marie Vreulink
affiliations: label: 15
institution: Department of Microbiology, Stellenbosch University
country: South Africa
name: 15 Department of Microbiology, Stellenbosch University , Stellenbosch, South Africa
orcid: http://orcid.org/0000-0001-6369-5995
last_name: Heitman
first_name: Joseph
name: Joseph Heitman
affiliations: label: 16
institution: Department of Molecular Genetics and Microbiology, Duke University Medical Center
country: USA
name: 16 Department of Molecular Genetics and Microbiology, Duke University Medical Center , Durham, North Carolina, USA
orcid: http://orcid.org/0000-0003-0019-8638
last_name: Perfect
first_name: John R.
name: John R. Perfect
affiliations: label: 5
institution: Division of Infectious Diseases, Department of Medicine, Duke University Medical Center
country: USA
name: Division of Infectious Diseases, Department of Medicine, Duke University Medical Center , Durham, North Carolina 27710, USA
last_name: Litvintseva
first_name: Anastasia
name: Anastasia Litvintseva
affiliations: label: 16
institution: Department of Molecular Genetics and Microbiology, Duke University Medical Center
country: USA
name: 16 Department of Molecular Genetics and Microbiology, Duke University Medical Center , Durham, North Carolina, USA
last_name: Bicanic
first_name: Tihana
name: Tihana Bicanic
affiliations: label: 3
institution: Institute of Infection and Immunity, St. George’s University London
country: United Kingdom
name: Institute of Infection and Immunity, St. George’s University London , London WC1E 6BT, United Kingdom
last_name: Harrison
first_name: Thomas S.
name: Thomas S. Harrison
affiliations: label: 3
institution: Institute of Infection and Immunity, St. George’s University London
country: United Kingdom
name: Institute of Infection and Immunity, St. George’s University London , London WC1E 6BT, United Kingdom
orcid: http://orcid.org/0000-0002-1862-6402
last_name: Fisher
first_name: Matthew C.
name: Matthew C. Fisher
corresponding: yes
affiliations: label: 1
institution: Department of Infectious Disease Epidemiology, Imperial College London
country: United Kingdom
name: Department of Infectious Disease Epidemiology, Imperial College London , London, W2 1PG United Kingdom
orcid: http://orcid.org/0000-0002-5778-960X
last_name: Cuomo
first_name: Christina A.
name: Christina A. Cuomo
corresponding: yes
affiliations: label: 2
institution: The Broad Institute of MIT and Harvard, Cambridge
country: USA
name: The Broad Institute of MIT and Harvard, Cambridge , Massachusetts 02142, USA
Affiliations: label: 1
institution: Department of Infectious Disease Epidemiology, Imperial College London
country: United Kingdom
name: Department of Infectious Disease Epidemiology, Imperial College London , London, W2 1PG United Kingdom
label: 2
institution: The Broad Institute of MIT and Harvard, Cambridge
country: USA
name: The Broad Institute of MIT and Harvard, Cambridge , Massachusetts 02142, USA
label: 3
institution: Institute of Infection and Immunity, St. George’s University London
country: United Kingdom
name: Institute of Infection and Immunity, St. George’s University London , London WC1E 6BT, United Kingdom
label: 4
institution: Wellcome Trust Sanger Institute
country: United Kingdom
name: Wellcome Trust Sanger Institute , Wellcome Genome Campus, Cambridge, United Kingdom
label: 5
institution: Division of Infectious Diseases, Department of Medicine, Duke University Medical Center
country: USA
name: Division of Infectious Diseases, Department of Medicine, Duke University Medical Center , Durham, North Carolina 27710, USA
label: 6
institution: Department of Medical Mycology, Vallabhbhai Patel Chest Institute, University of Delhi
country: India
name: Department of Medical Mycology, Vallabhbhai Patel Chest Institute, University of Delhi , Delhi 110007, India
label: 7
institution: Integrative Epidemiology Unit, School of Social and Community Medicine, University of Bristol
country: United Kingdom
name: Integrative Epidemiology Unit, School of Social and Community Medicine, University of Bristol , Bristol BS8 1TH, United Kingdom
label: 8
institution: Division of Infectious Diseases of the Federal University of São Paulo-UNIFESP
country: Brazil
name: Division of Infectious Diseases of the Federal University of São Paulo-UNIFESP , São Paulo 04039-032, Brazil
label: 9
institution: Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Sydney Medical School-Westmead Hospital, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead Institute for Medical Research
country: Australia
name: Molecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Sydney Medical School-Westmead Hospital, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead Institute for Medical Research , Sydney, Australia
label: 10
institution: Mycology Laboratory, Evandro Chagas National Institute of Infectious Diseases
country: Brazil
name: 10 Mycology Laboratory, Evandro Chagas National Institute of Infectious Diseases , Oswaldo Cruz Foundation, Rio de Janeiro, Brazil
label: 11
institution: TGen North, Translational Genomics Research Institute
country: USA
name: 11 TGen North, Translational Genomics Research Institute , Flagstaff, Arizona, USA
label: 12
institution: Department of Medical Microbiology and Infectious Diseases
country: The Netherlands
name: 12 Department of Medical Microbiology and Infectious Diseases , Canisius-Wilhelmina Hospital, Nijmegen, The Netherlands
label: 13
institution: Departamento Bacteriología-Micologia, Centro de Investigación, Diagnóstico y Referencia
name: 13 Departamento Bacteriología-Micologia, Centro de Investigación, Diagnóstico y Referencia , Instituto de Medicina Tropical Pedro Kourí La Habana, Cuba
label: 14
institution: Laboratoire de Parasitologie-Mycologie, AP-HP, Groupe Hospitalier Saint-Louis-Lariboisière-Fernand-WidalParis, France; Université Paris Diderot, Sorbonne Paris CitéParis, France; Unité de Mycologie Moléculaire
country: France
name: 14 Laboratoire de Parasitologie-Mycologie, AP-HP, Groupe Hospitalier Saint-Louis-Lariboisière-Fernand-WidalParis, France; Université Paris Diderot, Sorbonne Paris CitéParis, France; Unité de Mycologie Moléculaire , Institut Pasteur, Centre National de la Recherche Scientifique, Centre National de Référence Mycoses Invasives et Antifongiques, URA3012 Paris, France
label: 15
institution: Department of Microbiology, Stellenbosch University
country: South Africa
name: 15 Department of Microbiology, Stellenbosch University , Stellenbosch, South Africa
label: 16
institution: Department of Molecular Genetics and Microbiology, Duke University Medical Center
country: USA
name: 16 Department of Molecular Genetics and Microbiology, Duke University Medical Center , Durham, North Carolina, USA
Field: Medicine
Document type: preprint
Year: 2017