dataesr/affiliations-benchmark huggingface dataset:
Title: A method to assess significance of differences in RNA expression levels among specific groups of genes
Authors: orcid: http://orcid.org/0000-0002-8164-2480
last_name: He
first_name: Mingze
name: Mingze He
affiliations: label: 1
institution: Bioinformatics and Computational Biology Program, Iowa State University
country: USA
name: Bioinformatics and Computational Biology Program, Iowa State University , Ames, Iowa, USA , 50011
label: 2
institution: Department of Genetics, Development and Cell Biology, Iowa State University
country: USA
name: Department of Genetics, Development and Cell Biology, Iowa State University , Ames, Iowa, USA 50011
orcid: http://orcid.org/0000-0002-2093-8018
last_name: Liu
first_name: Peng
name: Peng Liu
affiliations: label: 1
institution: Bioinformatics and Computational Biology Program, Iowa State University
country: USA
name: Bioinformatics and Computational Biology Program, Iowa State University , Ames, Iowa, USA , 50011
label: 3
institution: Department of Statistics, Iowa State University
country: USA
name: Department of Statistics, Iowa State University , Ames, Iowa, USA 50011
orcid: http://orcid.org/0000-0003-0069-1430
last_name: Lawrence-Dill
first_name: Carolyn J.
name: Carolyn J. Lawrence-Dill
affiliations: label: 1
institution: Bioinformatics and Computational Biology Program, Iowa State University
country: USA
name: Bioinformatics and Computational Biology Program, Iowa State University , Ames, Iowa, USA , 50011
label: 2
institution: Department of Genetics, Development and Cell Biology, Iowa State University
country: USA
name: Department of Genetics, Development and Cell Biology, Iowa State University , Ames, Iowa, USA 50011
label: 4
institution: Department of Agronomy, Iowa State University
country: USA
name: Department of Agronomy, Iowa State University , Ames, Iowa, USA 50011
notes: communications: triffid@iastate.edu
Affiliations: label: 1
institution: Bioinformatics and Computational Biology Program, Iowa State University
country: USA
name: Bioinformatics and Computational Biology Program, Iowa State University , Ames, Iowa, USA , 50011
label: 2
institution: Department of Genetics, Development and Cell Biology, Iowa State University
country: USA
name: Department of Genetics, Development and Cell Biology, Iowa State University , Ames, Iowa, USA 50011
label: 3
institution: Department of Statistics, Iowa State University
country: USA
name: Department of Statistics, Iowa State University , Ames, Iowa, USA 50011
label: 4
institution: Department of Agronomy, Iowa State University
country: USA
name: Department of Agronomy, Iowa State University , Ames, Iowa, USA 50011
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Epidemiology of the multidrug-resistant ST131- H30 subclone among extraintestinal Escherichia coli collected from US children
Authors: last_name: Miles-Jay
first_name: Arianna
name: Arianna Miles-Jay
corresponding: yes
affiliations: label: 1
institution: Department of Epidemiology, University of Washington
name: Department of Epidemiology, University of Washington , Seattle, WA
label: 3
institution: Seattle Children’s Research Institute
name: Seattle Children’s Research Institute , Seattle, WA
last_name: Weissman
first_name: Scott J.
name: Scott J. Weissman
affiliations: label: 2
institution: Department of Pediatrics, University of Washington
name: Department of Pediatrics, University of Washington , Seattle, WA
label: 3
institution: Seattle Children’s Research Institute
name: Seattle Children’s Research Institute , Seattle, WA
last_name: Adler
first_name: Amanda L.
name: Amanda L. Adler
affiliations: label: 3
institution: Seattle Children’s Research Institute
name: Seattle Children’s Research Institute , Seattle, WA
last_name: Tchesnokova
first_name: Veronika
name: Veronika Tchesnokova
affiliations: label: 4
institution: Department of Microbiology, University of Washington
name: Department of Microbiology, University of Washington , Seattle, WA
last_name: Sokurenko
first_name: Evgeni V.
name: Evgeni V. Sokurenko
affiliations: label: 4
institution: Department of Microbiology, University of Washington
name: Department of Microbiology, University of Washington , Seattle, WA
last_name: Baseman
first_name: Janet G.
name: Janet G. Baseman
affiliations: label: 1
institution: Department of Epidemiology, University of Washington
name: Department of Epidemiology, University of Washington , Seattle, WA
last_name: Zerr
first_name: Danielle M.
name: Danielle M. Zerr
corresponding: yes
affiliations: label: 2
institution: Department of Pediatrics, University of Washington
name: Department of Pediatrics, University of Washington , Seattle, WA
label: 3
institution: Seattle Children’s Research Institute
name: Seattle Children’s Research Institute , Seattle, WA
Affiliations: label: 1
institution: Department of Epidemiology, University of Washington
name: Department of Epidemiology, University of Washington , Seattle, WA
label: 2
institution: Department of Pediatrics, University of Washington
name: Department of Pediatrics, University of Washington , Seattle, WA
label: 3
institution: Seattle Children’s Research Institute
name: Seattle Children’s Research Institute , Seattle, WA
label: 4
institution: Department of Microbiology, University of Washington
name: Department of Microbiology, University of Washington , Seattle, WA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Proportionality: a valid alternative to correlation for relative data
Authors: last_name: Lovell
first_name: David
name: David Lovell
corresponding: yes
affiliations: label: 1
institution: CSIRO Computational Informatics
country: Australia
name: CSIRO Computational Informatics , Canberra, Australia
last_name: Pawlowsky-Glahn
first_name: Vera
name: Vera Pawlowsky-Glahn
affiliations: label: 2
institution: Dept. d’Informàtica, Matemàtica Aplicada i Estadística.
country: España
name: Dept. d’Informàtica, Matemàtica Aplicada i Estadística. U. de Girona, España
last_name: Egozcue
first_name: Juan José
name: Juan José Egozcue
affiliations: label: 3
institution: Dept. Applied Mathematics III, U. Politécnica de Catalunya
country: Spain
name: Dept. Applied Mathematics III, U. Politécnica de Catalunya , Barcelona, Spain
last_name: Marguerat
first_name: Samuel
name: Samuel Marguerat
affiliations: label: 4
institution: MRC Clinical Sciences Centre
country: UK
name: MRC Clinical Sciences Centre , Imperial College London, UK
last_name: Bähler
first_name: Jürg
name: Jürg Bähler
affiliations: label: 5
institution: Research Department of Genetics, Evolution and Environment, University College London
country: UK
name: Research Department of Genetics, Evolution and Environment, University College London , UK
Affiliations: label: 1
institution: CSIRO Computational Informatics
country: Australia
name: CSIRO Computational Informatics , Canberra, Australia
label: 2
institution: Dept. d’Informàtica, Matemàtica Aplicada i Estadística.
country: España
name: Dept. d’Informàtica, Matemàtica Aplicada i Estadística. U. de Girona, España
label: 3
institution: Dept. Applied Mathematics III, U. Politécnica de Catalunya
country: Spain
name: Dept. Applied Mathematics III, U. Politécnica de Catalunya , Barcelona, Spain
label: 4
institution: MRC Clinical Sciences Centre
country: UK
name: MRC Clinical Sciences Centre , Imperial College London, UK
label: 5
institution: Research Department of Genetics, Evolution and Environment, University College London
country: UK
name: Research Department of Genetics, Evolution and Environment, University College London , UK
Field: Mathematics
Document type: preprint
Year: 2014
Title: A clustering neural network model of insect olfaction
Authors: last_name: Pehlevan
first_name: Cengiz
name: Cengiz Pehlevan
corresponding: yes
affiliations: label: 1
institution: Center for Computational Biology, Flatiron Institute
name: Center for Computational Biology, Flatiron Institute , New York, NY
last_name: Genkin
first_name: Alexander
name: Alexander Genkin
corresponding: yes
affiliations: label: 2
institution: NYU Langone Medical Center
name: NYU Langone Medical Center , New York, NY
last_name: Chklovskii
first_name: Dmitri B.
name: Dmitri B. Chklovskii
affiliations: label: 1
institution: Center for Computational Biology, Flatiron Institute
name: Center for Computational Biology, Flatiron Institute , New York, NY
label: 2
institution: NYU Langone Medical Center
name: NYU Langone Medical Center , New York, NY
Affiliations: label: 1
institution: Center for Computational Biology, Flatiron Institute
name: Center for Computational Biology, Flatiron Institute , New York, NY
label: 2
institution: NYU Langone Medical Center
name: NYU Langone Medical Center , New York, NY
Field: Neuroscience
Document type: preprint
Year: 2017
Title: The neurocognitive architecture of fluid ability in children and adolescents
Authors: last_name: Fuhrmann
first_name: D.
name: D. Fuhrmann
corresponding: yes
affiliations: label: 1
institution: MRC Cognition and Brain Sciences Unit, University of Cambridge
country: UK
name: MRC Cognition and Brain Sciences Unit, University of Cambridge , Cambridge, UK
last_name: Simpson-Kent
first_name: I. L.
name: I. L. Simpson-Kent
affiliations: label: 1
institution: MRC Cognition and Brain Sciences Unit, University of Cambridge
country: UK
name: MRC Cognition and Brain Sciences Unit, University of Cambridge , Cambridge, UK
last_name: Bathelt
first_name: J.
name: J. Bathelt
affiliations: label: 1
institution: MRC Cognition and Brain Sciences Unit, University of Cambridge
country: UK
name: MRC Cognition and Brain Sciences Unit, University of Cambridge , Cambridge, UK
affiliations: label: 1
institution: MRC Cognition and Brain Sciences Unit, University of Cambridge
country: UK
name: MRC Cognition and Brain Sciences Unit, University of Cambridge , Cambridge, UK
last_name: Kievit
first_name: R. A.
name: R. A. Kievit
affiliations: label: 1
institution: MRC Cognition and Brain Sciences Unit, University of Cambridge
country: UK
name: MRC Cognition and Brain Sciences Unit, University of Cambridge , Cambridge, UK
Affiliations: label: 1
institution: MRC Cognition and Brain Sciences Unit, University of Cambridge
country: UK
name: MRC Cognition and Brain Sciences Unit, University of Cambridge , Cambridge, UK
Field: Psychology
Document type: preprint
Year: 2018
Title: Cellular acidosis triggers MondoA transcriptional activity by driving mitochondrial ATP production
Authors: last_name: Wilde
first_name: Blake R.
name: Blake R. Wilde
affiliations: label: 1
institution: Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah
country: USA
name: Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah , Salt Lake City, UT 84112, USA
notes: These authors contributed equally
orcid: http://orcid.org/0000-0002-5595-3269
last_name: Ye
first_name: Zhizhou
name: Zhizhou Ye
affiliations: label: 1
institution: Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah
country: USA
name: Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah , Salt Lake City, UT 84112, USA
notes: These authors contributed equally
last_name: Ayer
first_name: Donald E.
name: Donald E. Ayer
corresponding: yes
affiliations: label: 1
institution: Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah
country: USA
name: Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah , Salt Lake City, UT 84112, USA
notes: Lead Contact
Affiliations: label: 1
institution: Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah
country: USA
name: Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah , Salt Lake City, UT 84112, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Multi-scale Imaging Reveals Aberrant Connectome Organization and Elevated Dorsal Striatal Arc Expression in Advanced Age
Authors: orcid: http://orcid.org/0000-0001-8918-2418
last_name: Colon-Perez
first_name: Luis M.
name: Luis M. Colon-Perez
affiliations: label: 1
institution: Department of Psychiatry College of Medicine, University of Florida
country: USA
name: Department of Psychiatry College of Medicine, University of Florida , Gainesville, FL, 32610 USA
last_name: Turner
first_name: Sean M.
name: Sean M. Turner
affiliations: label: 2
institution: Department of Neuroscience College of Medicine, University of Florida
country: USA
name: Department of Neuroscience College of Medicine, University of Florida , Gainesville, FL, 32610 USA
last_name: Lubke
first_name: Katelyn N.
name: Katelyn N. Lubke
affiliations: label: 3
institution: Department of Biomedical Engineering College of Medicine, University of Florida
country: USA
name: Department of Biomedical Engineering College of Medicine, University of Florida , Gainesville, FL, 32610 USA
last_name: Febo
first_name: Marcelo
name: Marcelo Febo
corresponding: yes
affiliations: label: 1
institution: Department of Psychiatry College of Medicine, University of Florida
country: USA
name: Department of Psychiatry College of Medicine, University of Florida , Gainesville, FL, 32610 USA
label: 2
institution: Department of Neuroscience College of Medicine, University of Florida
country: USA
name: Department of Neuroscience College of Medicine, University of Florida , Gainesville, FL, 32610 USA
label: 3
institution: Department of Biomedical Engineering College of Medicine, University of Florida
country: USA
name: Department of Biomedical Engineering College of Medicine, University of Florida , Gainesville, FL, 32610 USA
orcid: http://orcid.org/0000-0002-1773-1294
last_name: Burke
first_name: Sara N.
name: Sara N. Burke
corresponding: yes
affiliations: label: 2
institution: Department of Neuroscience College of Medicine, University of Florida
country: USA
name: Department of Neuroscience College of Medicine, University of Florida , Gainesville, FL, 32610 USA
Affiliations: label: 1
institution: Department of Psychiatry College of Medicine, University of Florida
country: USA
name: Department of Psychiatry College of Medicine, University of Florida , Gainesville, FL, 32610 USA
label: 2
institution: Department of Neuroscience College of Medicine, University of Florida
country: USA
name: Department of Neuroscience College of Medicine, University of Florida , Gainesville, FL, 32610 USA
label: 3
institution: Department of Biomedical Engineering College of Medicine, University of Florida
country: USA
name: Department of Biomedical Engineering College of Medicine, University of Florida , Gainesville, FL, 32610 USA
Field: Neuroscience
Document type: preprint
Year: 2018
Title: Developmental Dynamics of Green Fluorescent Chromatophores in the Daggerblade Grass Shrimp, Palaemonetes Pugio Holthuis, 1949 (Decapoda, Caridea, Palaemonidae)
Authors: last_name: Phelps
first_name: M. P.
name: M. P. Phelps
corresponding: yes
Affiliations: institution: Department of Pathology, University of Washington
country: USA
name: Department of Pathology, University of Washington , 1959 NE Pacific St. Seattle, WA 98195, USA
Field: Neuroscience
Document type: preprint
Year: 2018
Title: Universal correction of enzymatic sequence bias
Authors: last_name: Martins
first_name: André L.
name: André L. Martins
corresponding: yes
affiliations: label: 1
institution: Biochemistry and Molecular Genetics Department, University of Virginia
name: Biochemistry and Molecular Genetics Department, University of Virginia
last_name: Walavalkar
first_name: Ninad M.
name: Ninad M. Walavalkar
corresponding: yes
affiliations: label: 1
institution: Biochemistry and Molecular Genetics Department, University of Virginia
name: Biochemistry and Molecular Genetics Department, University of Virginia
last_name: Anderson
first_name: Warren D.
name: Warren D. Anderson
corresponding: yes
affiliations: label: 1
institution: Biochemistry and Molecular Genetics Department, University of Virginia
name: Biochemistry and Molecular Genetics Department, University of Virginia
label: 2
institution: Center for Public Health Genomics, University of Virginia
name: Center for Public Health Genomics, University of Virginia
last_name: Zang
first_name: Chongzhi
name: Chongzhi Zang
corresponding: yes
affiliations: label: 1
institution: Biochemistry and Molecular Genetics Department, University of Virginia
name: Biochemistry and Molecular Genetics Department, University of Virginia
label: 2
institution: Center for Public Health Genomics, University of Virginia
name: Center for Public Health Genomics, University of Virginia
last_name: Guertin
first_name: Michael J
name: Michael J Guertin
corresponding: yes
affiliations: label: 1
institution: Biochemistry and Molecular Genetics Department, University of Virginia
name: Biochemistry and Molecular Genetics Department, University of Virginia
label: 2
institution: Center for Public Health Genomics, University of Virginia
name: Center for Public Health Genomics, University of Virginia
Affiliations: label: 1
institution: Biochemistry and Molecular Genetics Department, University of Virginia
name: Biochemistry and Molecular Genetics Department, University of Virginia
label: 2
institution: Center for Public Health Genomics, University of Virginia
name: Center for Public Health Genomics, University of Virginia
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Heart Rate n-Variability (HRnV): A Novel Representation of Beat-to-Beat Variation in Electrocardiography
Authors: last_name: Liu
first_name: Nan
name: Nan Liu
corresponding: yes
last_name: Guo
first_name: Dagang
name: Dagang Guo
last_name: Koh
first_name: Zhi Xiong
name: Zhi Xiong Koh
last_name: Ho
first_name: Andrew Fu Wah
name: Andrew Fu Wah Ho
last_name: Ong
first_name: Marcus Eng Hock
name: Marcus Eng Hock Ong
Affiliations: institution: N. Liu is with Health Services Research Centre
country: Singapore
name: N. Liu is with Health Services Research Centre , Singapore Health Services, and Duke-NUS Medical School, National University of Singapore, Singapore .
institution: D. Guo is with TIIM Healthcare Pte Ltd
country: Singapore
name: D. Guo is with TIIM Healthcare Pte Ltd , Singapore .
institution: Z.X. Koh is with Department of Emergency Medicine
country: Singapore
name: Z.X. Koh is with Department of Emergency Medicine , Singapore General Hospital, Singapore .
institution: A.F.W. Ho is with SingHealth Emergency Medicine Residency Programme
country: Singapore
name: A.F.W. Ho is with SingHealth Emergency Medicine Residency Programme , Singapore Health Services, Singapore .
institution: M.E.H. Ong is with Department of Emergency Medicine
country: Singapore
name: M.E.H. Ong is with Department of Emergency Medicine , Singapore General Hospital, and Duke-NUS Medical School, National University of Singapore, Singapore .
Field: Medicine
Document type: preprint
Year: 2018
Title: Predicting Drug Synergy and Antagonism from Genetic Interaction Neighborhoods
Authors: last_name: Young
first_name: Jonathan H.
name: Jonathan H. Young
last_name: Marcotte
first_name: Edward M.
name: Edward M. Marcotte
corresponding: yes
Affiliations: institution: Institute for Computational Engineering and Sciences
country: USA
name: Institute for Computational Engineering and Sciences , Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, USA
institution: Center for Systems and Synthetic Biology
country: USA
name: Center for Systems and Synthetic Biology , Institute for Cellular and Molecular Biology, Department of Molecular Biosciences, The University of Texas at Austin, Austin, Texas, USA
Field: Computer Science
Document type: preprint
Year: 2016
Title: Comparative evaluation of the genomes of common bacterial members of the Drosophila intestinal community
Authors: last_name: Petkau
first_name: Kristina
name: Kristina Petkau
last_name: Fast
first_name: David
name: David Fast
last_name: Duggal
first_name: Aashna
name: Aashna Duggal
last_name: Foley
first_name: Edan
name: Edan Foley
corresponding: yes
Affiliations: institution: University of Alberta, Department of Medical Microbiology and Immunology, Institute of Virology
name: University of Alberta, Department of Medical Microbiology and Immunology, Institute of Virology .
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: Development of a Self-Report Measure of Reward Sensitivity: A Test in Current and Former Smokers
Authors: last_name: Hughes
first_name: John R
name: John R Hughes
corresponding: yes
affiliations: label: a
institution: Vermont Center for Behavior and Health, Departments of Psychiatry and Psychological Science, University of Vermont
name: Vermont Center for Behavior and Health, Departments of Psychiatry and Psychological Science, University of Vermont , Burlington, VT 05401,
last_name: Callas
first_name: Peter W
name: Peter W Callas
affiliations: label: b
institution: Department of Mathematics and Statistics, University of Vermont
name: Department of Mathematics and Statistics, University of Vermont , Burlington, VT 05401,
last_name: Priest
first_name: Jeff S
name: Jeff S Priest
affiliations: label: b
institution: Department of Mathematics and Statistics, University of Vermont
name: Department of Mathematics and Statistics, University of Vermont , Burlington, VT 05401,
last_name: Etter
first_name: Jean-Francois
name: Jean-Francois Etter
affiliations: label: c
institution: Institute of Global Health, University of Geneva
country: Switzerland
name: Institute of Global Health, University of Geneva , Geneva, Switzerland
last_name: Budney
first_name: Alan J
name: Alan J Budney
affiliations: label: d
institution: Department of Psychiatry, Geisel School of Medicine
name: Department of Psychiatry, Geisel School of Medicine , Hanover, NH
last_name: Sigmon
first_name: Stacey C
name: Stacey C Sigmon
affiliations: label: a
institution: Vermont Center for Behavior and Health, Departments of Psychiatry and Psychological Science, University of Vermont
name: Vermont Center for Behavior and Health, Departments of Psychiatry and Psychological Science, University of Vermont , Burlington, VT 05401,
Affiliations: label: a
institution: Vermont Center for Behavior and Health, Departments of Psychiatry and Psychological Science, University of Vermont
name: Vermont Center for Behavior and Health, Departments of Psychiatry and Psychological Science, University of Vermont , Burlington, VT 05401,
label: b
institution: Department of Mathematics and Statistics, University of Vermont
name: Department of Mathematics and Statistics, University of Vermont , Burlington, VT 05401,
label: c
institution: Institute of Global Health, University of Geneva
country: Switzerland
name: Institute of Global Health, University of Geneva , Geneva, Switzerland
label: d
institution: Department of Psychiatry, Geisel School of Medicine
name: Department of Psychiatry, Geisel School of Medicine , Hanover, NH
Field: Psychology
Document type: preprint
Year: 2017
Title: The Emergent Connectome in Caenorhabditis elegans Embryogenesis
Authors: notes: For past and current list of contributors, please see the group website: http://devoworm.weebly.com
last_name: Alicea
first_name: Bradly
name: Bradly Alicea
affiliations: label: 2
institution: Orthogonal Research, Champaign
name: Orthogonal Research, Champaign , IL bradly.alicea@outlook.com
label: 3
institution: OpenWorm Foundation, Boston
name: OpenWorm Foundation, Boston , MA
Affiliations: label: 2
institution: Orthogonal Research, Champaign
name: Orthogonal Research, Champaign , IL bradly.alicea@outlook.com
label: 3
institution: OpenWorm Foundation, Boston
name: OpenWorm Foundation, Boston , MA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017