dataesr/affiliations-benchmark huggingface dataset:
Title: Recurrent alternative splicing isoform switches in tumor samples provide novel signatures of cancer
Authors: last_name: Sebestyén
first_name: Endre
name: Endre Sebestyén
affiliations: label: 1
institution: Computational Genomics, Universitat Pompeu Fabra
country: Spain
name: Computational Genomics, Universitat Pompeu Fabra , Dr. Aiguader 88, E08003 Barcelona, Spain
last_name: Zawisza
first_name: Michał
name: Michał Zawisza
affiliations: label: 2
institution: Universitat Politècnica de Catalunya
country: Spain
name: Universitat Politècnica de Catalunya , Jordi Girona 1-3, Barcelona E08034, Spain
last_name: Eyras
first_name: Eduardo
name: Eduardo Eyras
corresponding: yes
affiliations: label: 1
institution: Computational Genomics, Universitat Pompeu Fabra
country: Spain
name: Computational Genomics, Universitat Pompeu Fabra , Dr. Aiguader 88, E08003 Barcelona, Spain
label: 3
institution: Catalan Institution for Research and Advanced Studies
country: Spain
name: Catalan Institution for Research and Advanced Studies , Passeig Lluís Companys 23, E08010 Barcelona, Spain
Affiliations: label: 1
institution: Computational Genomics, Universitat Pompeu Fabra
country: Spain
name: Computational Genomics, Universitat Pompeu Fabra , Dr. Aiguader 88, E08003 Barcelona, Spain
label: 2
institution: Universitat Politècnica de Catalunya
country: Spain
name: Universitat Politècnica de Catalunya , Jordi Girona 1-3, Barcelona E08034, Spain
label: 3
institution: Catalan Institution for Research and Advanced Studies
country: Spain
name: Catalan Institution for Research and Advanced Studies , Passeig Lluís Companys 23, E08010 Barcelona, Spain
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2014
Title: Aspirin treatment does not increase microhemorrhage size in young or aged mice
Authors: last_name: Chan
first_name: Sandy
name: Sandy Chan
last_name: Brophy
first_name: Morgan
name: Morgan Brophy
last_name: Nishimura
first_name: Nozomi
name: Nozomi Nishimura
orcid: http://orcid.org/0000-0002-7800-9596
last_name: Schaffer
first_name: Chris B.
name: Chris B. Schaffer
corresponding: yes
Affiliations: institution: Meinig School of Biomedical Engineering, Cornell University
country: United States of America
name: Meinig School of Biomedical Engineering, Cornell University , Ithaca, New York, United States of America
Field: Medicine
Document type: preprint
Year: 2018
Title: Geometric constraints dominate the antigenic evolution of influenza H3N2 hemagglutinin
Authors: last_name: Meyer
first_name: Austin G.
name: Austin G. Meyer
affiliations: label: 1
institution: Department of Integrative Biology, Institute for Cellular and Molecular Biology, and
                        Center for Computational Biology and Bioinformatics. The University of Texas at
                        Austin
country: USA
name: Department of Integrative Biology, Institute for Cellular and Molecular Biology, and
            Center for Computational Biology and Bioinformatics. The University of Texas at
            Austin , Austin, TX 78712, USA .
label: 2
institution: School of Medicine, Texas Tech University Health Sciences Center
country: USA
name: School of Medicine, Texas Tech University Health Sciences Center ,
          Lubbock, TX 79430, USA .
last_name: Wilke
first_name: Claus O.
name: Claus O. Wilke
corresponding: yes
affiliations: label: 1
institution: Department of Integrative Biology, Institute for Cellular and Molecular Biology, and
                        Center for Computational Biology and Bioinformatics. The University of Texas at
                        Austin
country: USA
name: Department of Integrative Biology, Institute for Cellular and Molecular Biology, and
            Center for Computational Biology and Bioinformatics. The University of Texas at
            Austin , Austin, TX 78712, USA .
Affiliations: label: 1
institution: Department of Integrative Biology, Institute for Cellular and Molecular Biology, and
                        Center for Computational Biology and Bioinformatics. The University of Texas at
                        Austin
country: USA
name: Department of Integrative Biology, Institute for Cellular and Molecular Biology, and
            Center for Computational Biology and Bioinformatics. The University of Texas at
            Austin , Austin, TX 78712, USA .
label: 2
institution: School of Medicine, Texas Tech University Health Sciences Center
country: USA
name: School of Medicine, Texas Tech University Health Sciences Center ,
          Lubbock, TX 79430, USA .
Field: Medicine
Document type: preprint
Year: 2015
Title: Hydraulic conductance and the maintenance of water balance in flowers
Authors: orcid: http://orcid.org/0000-0002-4423-8729
last_name: Roddy
first_name: Adam B.
name: Adam B. Roddy
corresponding: yes
affiliations: label: 1
institution: Department of Integrative Biology, University of California
country: USA
name: Department of Integrative Biology, University of California , Berkeley, CA, USA
label: 2
institution: Present address: School of Forestry & Environmental Studies, Yale University
country: USA
name: Present address: School of Forestry & Environmental Studies, Yale University , New Haven, CT, USA
orcid: http://orcid.org/0000-0002-4423-8729
last_name: Dawson
first_name: Todd E.
name: Todd E. Dawson
affiliations: label: 1
institution: Department of Integrative Biology, University of California
country: USA
name: Department of Integrative Biology, University of California , Berkeley, CA, USA
Affiliations: label: 1
institution: Department of Integrative Biology, University of California
country: USA
name: Department of Integrative Biology, University of California , Berkeley, CA, USA
label: 2
institution: Present address: School of Forestry & Environmental Studies, Yale University
country: USA
name: Present address: School of Forestry & Environmental Studies, Yale University , New Haven, CT, USA
Field: Agricultural and Biological Sciences
Document type: preprint
Year: 2015
Title: The Mechanical of Organic Acids Secreted by Roots of Tartary Buckwheat under the Effects of Low Nitrogen Stress
Authors: last_name: Chen
first_name: Wei
name: Wei Chen
corresponding: yes
affiliations: label: 1
institution: School of Geographical Science, Shanxi Normal University
country: China
name: School of Geographical Science, Shanxi Normal University , Linfen, Shanxi, China .
last_name: Cui
first_name: Yaru
name: Yaru Cui
affiliations: label: 1
institution: School of Geographical Science, Shanxi Normal University
country: China
name: School of Geographical Science, Shanxi Normal University , Linfen, Shanxi, China .
last_name: Yang
first_name: Yang
name: Yang Yang
affiliations: label: 1
institution: School of Geographical Science, Shanxi Normal University
country: China
name: School of Geographical Science, Shanxi Normal University , Linfen, Shanxi, China .
last_name: Huangfu
first_name: Qianhua
name: Qianhua Huangfu
affiliations: label: 1
institution: School of Geographical Science, Shanxi Normal University
country: China
name: School of Geographical Science, Shanxi Normal University , Linfen, Shanxi, China .
last_name: Sun
first_name: Congjian
name: Congjian Sun
affiliations: label: 1
institution: School of Geographical Science, Shanxi Normal University
country: China
name: School of Geographical Science, Shanxi Normal University , Linfen, Shanxi, China .
Affiliations: label: 1
institution: School of Geographical Science, Shanxi Normal University
country: China
name: School of Geographical Science, Shanxi Normal University , Linfen, Shanxi, China .
Field: Agricultural and Biological Sciences
Document type: preprint
Year: 2018
Title: The finite state projection based Fisher information matrix approach to estimate and maximize the information in single-cell experiments
Authors: orcid: http://orcid.org/0000-0003-0138-2867
last_name: Fox
first_name: Zachary
name: Zachary Fox
affiliations: label: 1
institution: Keck Scholars, School of Biomedical Engineering, Colorado State University
name: Keck Scholars, School of Biomedical Engineering, Colorado State University , Fort Collins, CO
orcid: http://orcid.org/0000-0001-6147-7329
last_name: Munsky
first_name: Brian
name: Brian Munsky
corresponding: yes
affiliations: label: 1
institution: Keck Scholars, School of Biomedical Engineering, Colorado State University
name: Keck Scholars, School of Biomedical Engineering, Colorado State University , Fort Collins, CO
label: 2
institution: Department of Chemical and Biological Engineering, Colorado State University
name: Department of Chemical and Biological Engineering, Colorado State University , Fort Collins, CO
Affiliations: label: 1
institution: Keck Scholars, School of Biomedical Engineering, Colorado State University
name: Keck Scholars, School of Biomedical Engineering, Colorado State University , Fort Collins, CO
label: 2
institution: Department of Chemical and Biological Engineering, Colorado State University
name: Department of Chemical and Biological Engineering, Colorado State University , Fort Collins, CO
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Decline in pneumococcal disease in unimmunized adults is associated with vaccine-associated protection against colonization in toddlers and preschool-aged children
Authors: orcid: http://orcid.org/0000-0003-1178-8086
last_name: Weinberger
first_name: Daniel M.
name: Daniel M. Weinberger
affiliations: label: 1
institution: Department of Epidemiology of Microbial Diseases, Yale School of Public Health
country: USA
name: Department of Epidemiology of Microbial Diseases, Yale School of Public Health , New Haven, CT, USA
last_name: Pitzer
first_name: Virginia E.
name: Virginia E. Pitzer
affiliations: label: 1
institution: Department of Epidemiology of Microbial Diseases, Yale School of Public Health
country: USA
name: Department of Epidemiology of Microbial Diseases, Yale School of Public Health , New Haven, CT, USA
last_name: Regev-Yochay
first_name: Gili
name: Gili Regev-Yochay
affiliations: label: 2
institution: Infection Prevention & Control Unit, Sheba Medical Center
country: Israel
name: Infection Prevention & Control Unit, Sheba Medical Center , Ramat Gan, Israel
label: 3
institution: Sackler School of Medicine, Tel Aviv University
country: Israel
name: Sackler School of Medicine, Tel Aviv University , Tel Aviv, Israel
last_name: Givon-Lavi
first_name: Noga
name: Noga Givon-Lavi
affiliations: label: 4
institution: Pediatric Infectious Diseases Unit, Soroka University Medical Center
country: Israel
name: Pediatric Infectious Diseases Unit, Soroka University Medical Center , Be’er Sheva, Israel
label: 5
institution: Faculty of Health Sciences, Ben-Gurion University of the Negev
country: Israel
name: Faculty of Health Sciences, Ben-Gurion University of the Negev , Be’er Sheva, Israel
last_name: Dagan
first_name: Ron
name: Ron Dagan
affiliations: label: 5
institution: Faculty of Health Sciences, Ben-Gurion University of the Negev
country: Israel
name: Faculty of Health Sciences, Ben-Gurion University of the Negev , Be’er Sheva, Israel
Affiliations: label: 1
institution: Department of Epidemiology of Microbial Diseases, Yale School of Public Health
country: USA
name: Department of Epidemiology of Microbial Diseases, Yale School of Public Health , New Haven, CT, USA
label: 2
institution: Infection Prevention & Control Unit, Sheba Medical Center
country: Israel
name: Infection Prevention & Control Unit, Sheba Medical Center , Ramat Gan, Israel
label: 3
institution: Sackler School of Medicine, Tel Aviv University
country: Israel
name: Sackler School of Medicine, Tel Aviv University , Tel Aviv, Israel
label: 4
institution: Pediatric Infectious Diseases Unit, Soroka University Medical Center
country: Israel
name: Pediatric Infectious Diseases Unit, Soroka University Medical Center , Be’er Sheva, Israel
label: 5
institution: Faculty of Health Sciences, Ben-Gurion University of the Negev
country: Israel
name: Faculty of Health Sciences, Ben-Gurion University of the Negev , Be’er Sheva, Israel
Field: Medicine
Document type: preprint
Year: 2018
Title: The mechanism of Ccr4-Not recruitment to specific mRNAs involves sequence-selective tethering by RNA-binding proteins
Authors: last_name: Webster
first_name: Michael W
name: Michael W Webster
last_name: Stowell
first_name: James A W
name: James A W Stowell
orcid: http://orcid.org/0000-0003-1815-3710
last_name: Passmore
first_name: Lori A
name: Lori A Passmore
corresponding: yes
Affiliations: institution: MRC Laboratory of Molecular Biology
name: MRC Laboratory of Molecular Biology , Cambridge CB2 0QH
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Citizen Science for Mining the Biomedical Literature
Authors: last_name: Tsueng
first_name: Ginger
name: Ginger Tsueng
affiliations: label: 1
institution: Department of Molecular and Experimental Medicine
country: USA
name: Department of Molecular and Experimental Medicine , The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
notes: Equal contribution
orcid: http://orcid.org/0000-0001-7587-232X
last_name: Nanis
first_name: Steven M.
name: Steven M. Nanis
affiliations: label: 1
institution: Department of Molecular and Experimental Medicine
country: USA
name: Department of Molecular and Experimental Medicine , The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
notes: Equal contribution
last_name: Fouquier
first_name: Jennifer
name: Jennifer Fouquier
affiliations: label: 1
institution: Department of Molecular and Experimental Medicine
country: USA
name: Department of Molecular and Experimental Medicine , The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
orcid: http://orcid.org/0000-0002-7334-7852
last_name: Good
first_name: Benjamin M
name: Benjamin M Good
affiliations: label: 1
institution: Department of Molecular and Experimental Medicine
country: USA
name: Department of Molecular and Experimental Medicine , The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
orcid: http://orcid.org/0000-0002-9859-4104
last_name: Su
first_name: Andrew I
name: Andrew I Su
affiliations: label: 1
institution: Department of Molecular and Experimental Medicine
country: USA
name: Department of Molecular and Experimental Medicine , The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
Affiliations: label: 1
institution: Department of Molecular and Experimental Medicine
country: USA
name: Department of Molecular and Experimental Medicine , The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: Improvement of arthroscopic surgical performance using a new wide-angle arthroscope
Authors: last_name: Kwak
first_name: Jae-Man
name: Jae-Man Kwak
affiliations: label: 1
institution: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University
country: South Korea
name: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University , Seoul, South Korea
last_name: Kholinne
first_name: Erica
name: Erica Kholinne
affiliations: label: 1
institution: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University
country: South Korea
name: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University , Seoul, South Korea
label: 2
institution: Department of Orthopedic Surgery, St. Carolus Hospital
country: Indonesia
name: Department of Orthopedic Surgery, St. Carolus Hospital , Jakarta, Indonesia
last_name: Koh
first_name: Kyoung Hwan
name: Kyoung Hwan Koh
affiliations: label: 1
institution: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University
country: South Korea
name: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University , Seoul, South Korea
orcid: http://orcid.org/0000-0002-9289-9193
last_name: Jeon
first_name: In-Ho
name: In-Ho Jeon
corresponding: yes
affiliations: label: 1
institution: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University
country: South Korea
name: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University , Seoul, South Korea
Affiliations: label: 1
institution: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University
country: South Korea
name: Department of Orthopedic Surgery, Asan Medical Center, College of Medicine, Ulsan University , Seoul, South Korea
label: 2
institution: Department of Orthopedic Surgery, St. Carolus Hospital
country: Indonesia
name: Department of Orthopedic Surgery, St. Carolus Hospital , Jakarta, Indonesia
Field: Medicine
Document type: preprint
Year: 2018
Title: Robust high content assessment of heterogeneous drug effects in 3D microenvironments
Authors: last_name: Murali
first_name: Vasanth S.
name: Vasanth S. Murali
affiliations: label: 1
institution: Department of Cell Biology
name: Department of Cell Biology , UT Southwestern Medical Center, Dallas, TX
label: 2
institution: Lyda Hill Department of Bioinformatics
name: Lyda Hill Department of Bioinformatics , UT Southwestern Medical Center, Dallas, TX
last_name: Chang
first_name: Bo-Jui
name: Bo-Jui Chang
affiliations: label: 1
institution: Department of Cell Biology
name: Department of Cell Biology , UT Southwestern Medical Center, Dallas, TX
last_name: Fiolka
first_name: Reto
name: Reto Fiolka
affiliations: label: 1
institution: Department of Cell Biology
name: Department of Cell Biology , UT Southwestern Medical Center, Dallas, TX
last_name: Danuser
first_name: Gaudenz
name: Gaudenz Danuser
affiliations: label: 1
institution: Department of Cell Biology
name: Department of Cell Biology , UT Southwestern Medical Center, Dallas, TX
label: 2
institution: Lyda Hill Department of Bioinformatics
name: Lyda Hill Department of Bioinformatics , UT Southwestern Medical Center, Dallas, TX
last_name: Cobanoglu
first_name: Murat Can
name: Murat Can Cobanoglu
affiliations: label: 2
institution: Lyda Hill Department of Bioinformatics
name: Lyda Hill Department of Bioinformatics , UT Southwestern Medical Center, Dallas, TX
last_name: Welf
first_name: Erik S.
name: Erik S. Welf
corresponding: yes
affiliations: label: 1
institution: Department of Cell Biology
name: Department of Cell Biology , UT Southwestern Medical Center, Dallas, TX
label: 2
institution: Lyda Hill Department of Bioinformatics
name: Lyda Hill Department of Bioinformatics , UT Southwestern Medical Center, Dallas, TX
Affiliations: label: 1
institution: Department of Cell Biology
name: Department of Cell Biology , UT Southwestern Medical Center, Dallas, TX
label: 2
institution: Lyda Hill Department of Bioinformatics
name: Lyda Hill Department of Bioinformatics , UT Southwestern Medical Center, Dallas, TX
Field: Engineering
Document type: preprint
Year: 2018
Title: Detailed temporal structure of communication networks in groups of songbirds
Authors: last_name: Stowell
first_name: Dan
name: Dan Stowell
affiliations: label: 1
institution: Centre for Digital Music, Queen Mary University of London
country: UK
name: Centre for Digital Music, Queen Mary University of London , UK
notes: dan.stowell@qmul.ac.uk
last_name: Gill
first_name: Lisa
name: Lisa Gill
affiliations: label: 2
institution: Max Planck Institute for Ornithology, Seewiesen
country: Germany
name: Max Planck Institute for Ornithology, Seewiesen , Germany
last_name: Clayton
first_name: David
name: David Clayton
affiliations: label: 3
institution: School of Biological and Chemical Sciences, Queen Mary University of London
country: UK
name: School of Biological and Chemical Sciences, Queen Mary University of London , UK
Affiliations: label: 1
institution: Centre for Digital Music, Queen Mary University of London
country: UK
name: Centre for Digital Music, Queen Mary University of London , UK
label: 2
institution: Max Planck Institute for Ornithology, Seewiesen
country: Germany
name: Max Planck Institute for Ornithology, Seewiesen , Germany
label: 3
institution: School of Biological and Chemical Sciences, Queen Mary University of London
country: UK
name: School of Biological and Chemical Sciences, Queen Mary University of London , UK
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: Fast and memory-efficient noisy read overlapping with KD-trees
Authors: last_name: Parkhomchuk
first_name: Dmitri
name: Dmitri Parkhomchuk
corresponding: yes
affiliations: label: 1
institution: Helmholtz Centre for Infection Research
country: Germany
name: Helmholtz Centre for Infection Research , 38124 Braunschweig, Germany
label: 2
institution: German Center for Infection Research (DZIF)
country: Germany
name: German Center for Infection Research (DZIF) , 38124 Braunschweig, Germany
notes: These authors contributed equally to this work.
last_name: Bremges
first_name: Andreas
name: Andreas Bremges
affiliations: label: 1
institution: Helmholtz Centre for Infection Research
country: Germany
name: Helmholtz Centre for Infection Research , 38124 Braunschweig, Germany
label: 2
institution: German Center for Infection Research (DZIF)
country: Germany
name: German Center for Infection Research (DZIF) , 38124 Braunschweig, Germany
notes: These authors contributed equally to this work.
last_name: McHardy
first_name: Alice C.
name: Alice C. McHardy
corresponding: yes
affiliations: label: 1
institution: Helmholtz Centre for Infection Research
country: Germany
name: Helmholtz Centre for Infection Research , 38124 Braunschweig, Germany
Affiliations: label: 1
institution: Helmholtz Centre for Infection Research
country: Germany
name: Helmholtz Centre for Infection Research , 38124 Braunschweig, Germany
label: 2
institution: German Center for Infection Research (DZIF)
country: Germany
name: German Center for Infection Research (DZIF) , 38124 Braunschweig, Germany
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Specter: linear deconvolution as a new paradigm for targeted analysis of data-independent acquisition mass spectrometry proteomics
Authors: last_name: Peckner
first_name: Ryan
name: Ryan Peckner
affiliations: label: 1
institution: Broad Institute of MIT and Harvard, 415 Main St
name: Broad Institute of MIT and Harvard, 415 Main St , Cambridge, MA 02142
last_name: Myers
first_name: Samuel A
name: Samuel A Myers
affiliations: label: 1
institution: Broad Institute of MIT and Harvard, 415 Main St
name: Broad Institute of MIT and Harvard, 415 Main St , Cambridge, MA 02142
last_name: Egertson
first_name: Jarrett D
name: Jarrett D Egertson
affiliations: label: 2
institution: University of Washington, Seattle
name: University of Washington, Seattle , Seattle, WA 98105
last_name: Johnson
first_name: Richard S
name: Richard S Johnson
affiliations: label: 2
institution: University of Washington, Seattle
name: University of Washington, Seattle , Seattle, WA 98105
last_name: Carr
first_name: Steven A
name: Steven A Carr
affiliations: label: 1
institution: Broad Institute of MIT and Harvard, 415 Main St
name: Broad Institute of MIT and Harvard, 415 Main St , Cambridge, MA 02142
last_name: MacCoss
first_name: Michael J
name: Michael J MacCoss
affiliations: label: 2
institution: University of Washington, Seattle
name: University of Washington, Seattle , Seattle, WA 98105
last_name: Jaffe
first_name: Jacob D
name: Jacob D Jaffe
corresponding: yes
affiliations: label: 1
institution: Broad Institute of MIT and Harvard, 415 Main St
name: Broad Institute of MIT and Harvard, 415 Main St , Cambridge, MA 02142
Affiliations: label: 1
institution: Broad Institute of MIT and Harvard, 415 Main St
name: Broad Institute of MIT and Harvard, 415 Main St , Cambridge, MA 02142
label: 2
institution: University of Washington, Seattle
name: University of Washington, Seattle , Seattle, WA 98105
Field: Chemistry
Document type: preprint
Year: 2017