dataesr/affiliations-benchmark huggingface dataset:
Title: SUPPA: a super-fast pipeline for alternative splicing analysis from RNA-Seq
Authors: last_name: Alamancos
first_name: Gael P.
name: Gael P. Alamancos
affiliations: label: 1
institution: Computational Genomics, Universitat Pompeu Fabra
country: Spain
name: Computational Genomics, Universitat Pompeu Fabra , E08003, Barcelona, Spain
last_name: Pagès
first_name: Amadís
name: Amadís Pagès
affiliations: label: 1
institution: Computational Genomics, Universitat Pompeu Fabra
country: Spain
name: Computational Genomics, Universitat Pompeu Fabra , E08003, Barcelona, Spain
last_name: Trincado
first_name: Juan L.
name: Juan L. Trincado
affiliations: label: 1
institution: Computational Genomics, Universitat Pompeu Fabra
country: Spain
name: Computational Genomics, Universitat Pompeu Fabra , E08003, Barcelona, Spain
last_name: Bellora
first_name: Nicolás
name: Nicolás Bellora
affiliations: label: 2
institution: INIBIOMA, CONICET-UNComahue
country: Argentina
name: INIBIOMA, CONICET-UNComahue , Bariloche, Río Negro, Argentina
last_name: Eyras
first_name: Eduardo
name: Eduardo Eyras
corresponding: yes
affiliations: label: 1
institution: Computational Genomics, Universitat Pompeu Fabra
country: Spain
name: Computational Genomics, Universitat Pompeu Fabra , E08003, Barcelona, Spain
label: 3
institution: Catalan Institution for Research and Advanced Studies
country: Spain
name: Catalan Institution for Research and Advanced Studies , E08010 Barcelona, Spain
notes: eduardo.eyras@upf.edu
Affiliations: label: 1
institution: Computational Genomics, Universitat Pompeu Fabra
country: Spain
name: Computational Genomics, Universitat Pompeu Fabra , E08003, Barcelona, Spain
label: 2
institution: INIBIOMA, CONICET-UNComahue
country: Argentina
name: INIBIOMA, CONICET-UNComahue , Bariloche, Río Negro, Argentina
label: 3
institution: Catalan Institution for Research and Advanced Studies
country: Spain
name: Catalan Institution for Research and Advanced Studies , E08010 Barcelona, Spain
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2014
Title: Species sorting along a subsidy gradient alters community stability
Authors: last_name: Mucarella
first_name: Mario E.
name: Mario E. Mucarella
affiliations: label: 1
institution: Department of Biology, Indiana University
country: USA
name: Department of Biology, Indiana University , Bloomington, IN 47405 USA
last_name: Jones
first_name: Stuart E.
name: Stuart E. Jones
affiliations: label: 2
institution: Department of Biological Sciences, University of Notre Dame
country: USA
name: Department of Biological Sciences, University of Notre Dame , Notre Dame, IN 46556 USA
last_name: Lennon
first_name: Jay T.
name: Jay T. Lennon
corresponding: yes
affiliations: label: 1
institution: Department of Biology, Indiana University
country: USA
name: Department of Biology, Indiana University , Bloomington, IN 47405 USA
Affiliations: label: 1
institution: Department of Biology, Indiana University
country: USA
name: Department of Biology, Indiana University , Bloomington, IN 47405 USA
label: 2
institution: Department of Biological Sciences, University of Notre Dame
country: USA
name: Department of Biological Sciences, University of Notre Dame , Notre Dame, IN 46556 USA
Field: Environmental Science
Document type: preprint
Year: 2015
Title: Use-dependent plasticity in human primary motor hand area: Synergistic interplay between training and immobilisation
Authors: orcid: http://orcid.org/0000-0003-3262-5251
last_name: Raffin
first_name: Estelle
name: Estelle Raffin
corresponding: yes
affiliations: label: 1
institution: Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre
country: Denmark
name: Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre , Hvidovre, Denmark
label: 2
institution: Grenoble Institut des Neurosciences
country: France
name: Inserm, U1216, Grenoble Institut des Neurosciences , Grenoble, France
label: 3
institution: Brain Mind Institute and Centre of Neuroprosthetics (CNP), Swiss Federal Institute of Technology (EPFL)
country: Switzerland
name: Brain Mind Institute and Centre of Neuroprosthetics (CNP), Swiss Federal Institute of Technology (EPFL) , Geneva, Switzerland
last_name: Siebner
first_name: Hartwig Roman
name: Hartwig Roman Siebner
affiliations: label: 1
institution: Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre
country: Denmark
name: Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre , Hvidovre, Denmark
label: 4
institution: Department of Neurology, Copenhagen University Hospital Bispebjerg
country: Denmark
name: Department of Neurology, Copenhagen University Hospital Bispebjerg , Copenhagen, Denmark
Affiliations: label: 1
institution: Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre
country: Denmark
name: Danish Research Centre for Magnetic Resonance, Centre for Functional and Diagnostic Imaging and Research, Copenhagen University Hospital Hvidovre , Hvidovre, Denmark
label: 2
institution: Grenoble Institut des Neurosciences
country: France
name: Inserm, U1216, Grenoble Institut des Neurosciences , Grenoble, France
label: 3
institution: Brain Mind Institute and Centre of Neuroprosthetics (CNP), Swiss Federal Institute of Technology (EPFL)
country: Switzerland
name: Brain Mind Institute and Centre of Neuroprosthetics (CNP), Swiss Federal Institute of Technology (EPFL) , Geneva, Switzerland
label: 4
institution: Department of Neurology, Copenhagen University Hospital Bispebjerg
country: Denmark
name: Department of Neurology, Copenhagen University Hospital Bispebjerg , Copenhagen, Denmark
Field: Neuroscience
Document type: preprint
Year: 2017
Title: Evolution of transmission mode in conditional mutualisms with spatial variation in symbiont quality
Authors: orcid: http://orcid.org/0000-0001-7022-5342
last_name: Brown
first_name: Alexandra
name: Alexandra Brown
orcid: http://orcid.org/0000-0001-8149-7124
last_name: Akçay
first_name: Erol
name: Erol Akçay
Affiliations: institution: Department of Biology, University of Pennsylvania
name: Department of Biology, University of Pennsylvania
Field: Agricultural and Biological Sciences
Document type: preprint
Year: 2018
Title: A Genome-wide Survey of Mutations in the Jurkat Cell Line
Authors: last_name: Gioia
first_name: Louis
name: Louis Gioia
corresponding: yes
affiliations: label: 1
institution: Department of Molecular Medicine, The Scripps Research Institute
country: USA
name: Department of Molecular Medicine, The Scripps Research Institute , La Jolla, California 92037, USA
last_name: Siddique
first_name: Azeem
name: Azeem Siddique
affiliations: label: 2
institution: Next Generation Sequencing Core, The Scripps Research Institute
country: USA
name: Next Generation Sequencing Core, The Scripps Research Institute , La Jolla, California 92037, USA
last_name: Head
first_name: Steven R.
name: Steven R. Head
affiliations: label: 2
institution: Next Generation Sequencing Core, The Scripps Research Institute
country: USA
name: Next Generation Sequencing Core, The Scripps Research Institute , La Jolla, California 92037, USA
last_name: Salomon
first_name: Daniel R.
name: Daniel R. Salomon
affiliations: label: 1
institution: Department of Molecular Medicine, The Scripps Research Institute
country: USA
name: Department of Molecular Medicine, The Scripps Research Institute , La Jolla, California 92037, USA
notes: Deceased November 10, 2016
last_name: Su
first_name: Andrew I.
name: Andrew I. Su
affiliations: label: 1
institution: Department of Molecular Medicine, The Scripps Research Institute
country: USA
name: Department of Molecular Medicine, The Scripps Research Institute , La Jolla, California 92037, USA
Affiliations: label: 1
institution: Department of Molecular Medicine, The Scripps Research Institute
country: USA
name: Department of Molecular Medicine, The Scripps Research Institute , La Jolla, California 92037, USA
label: 2
institution: Next Generation Sequencing Core, The Scripps Research Institute
country: USA
name: Next Generation Sequencing Core, The Scripps Research Institute , La Jolla, California 92037, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Adaptive feature detection from differential processing in parallel retinal pathways
Authors: last_name: Ozuysal
first_name: Yusuf
name: Yusuf Ozuysal
affiliations: label: 1
institution: Department of Electrical Engineering
name: Department of Electrical Engineering
notes: Present address: Google, Inc., Mountain View, CA
last_name: Kastner
first_name: David B.
name: David B. Kastner
affiliations: label: 2
institution: Neuroscience Program, Stanford University
name: Neuroscience Program, Stanford University , Stanford, CA
notes: Present address: Department of Psychiatry, University of California, San Francisco, CA
orcid: http://orcid.org/0000-0001-8692-5685
last_name: Baccus
first_name: Stephen A.
name: Stephen A. Baccus
corresponding: yes
affiliations: label: 3
institution: Department of Neurobiology, Stanford University
country: USA
name: Department of Neurobiology, Stanford University , Stanford, CA, USA
Affiliations: label: 1
institution: Department of Electrical Engineering
name: Department of Electrical Engineering
label: 2
institution: Neuroscience Program, Stanford University
name: Neuroscience Program, Stanford University , Stanford, CA
label: 3
institution: Department of Neurobiology, Stanford University
country: USA
name: Department of Neurobiology, Stanford University , Stanford, CA, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: How adaptive plasticity evolves when selected against
Authors: orcid: http://orcid.org/0000-0002-7925-4331
last_name: Rago
first_name: Alfredo
name: Alfredo Rago
affiliations: label: 1
institution: Lund University
country: Sweden
name: Lund University , Lund, Sweden
notes: These authors contributed equally to this work.
last_name: Kouvaris
first_name: Kostas
name: Kostas Kouvaris
affiliations: label: 2
institution: Southampton University
country: UK
name: Southampton University , Southampton, UK
notes: These authors contributed equally to this work.
last_name: Uller
first_name: Tobias
name: Tobias Uller
affiliations: label: 1
institution: Lund University
country: Sweden
name: Lund University , Lund, Sweden
last_name: Watson
first_name: Richard
name: Richard Watson
affiliations: label: 2
institution: Southampton University
country: UK
name: Southampton University , Southampton, UK
Affiliations: label: 1
institution: Lund University
country: Sweden
name: Lund University , Lund, Sweden
label: 2
institution: Southampton University
country: UK
name: Southampton University , Southampton, UK
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Reinterpretation of the localization of the ATP binding cassette transporter ABCG1 in insulin-secreting cells and insights regarding its trafficking and function
Authors: last_name: Harris
first_name: Megan T.
name: Megan T. Harris
last_name: Hussain
first_name: Syed Saad
name: Syed Saad Hussain
last_name: Inouye
first_name: Candice M.
name: Candice M. Inouye
orcid: http://orcid.org/0000-0002-5177-4749
last_name: Castle
first_name: Anna M.
name: Anna M. Castle
last_name: Castle
first_name: J. David
name: J. David Castle
corresponding: yes
Affiliations: institution: Department of Cell Biology, University of Virginia School of Medicine
name: Department of Cell Biology, University of Virginia School of Medicine , Charlottesville, VA 22908
Field: Medicine
Document type: preprint
Year: 2018
Title: Necessity and contingency in developmental genetic screens: LIN-3, Wnt and semaphorin pathways in vulval induction of the nematode Oscheius tipulae
Authors: last_name: Vargas-Velazquez
first_name: Amhed M.
name: Amhed M. Vargas-Velazquez
affiliations: label: 1
institution: Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University
country: France
name: Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University , 75005 Paris, France
last_name: Besnard
first_name: Fabrice
name: Fabrice Besnard
affiliations: label: 1
institution: Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University
country: France
name: Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University , 75005 Paris, France
notes: Current address: Laboratoire Reproduction et Devéloppement des Plantes, University of Lyon, ENS de Lyon, UCB Lyon 1, CNRS, INRA, F-69342 Lyon, France
last_name: Félix
first_name: Marie-Anne
name: Marie-Anne Félix
corresponding: yes
affiliations: label: 1
institution: Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University
country: France
name: Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University , 75005 Paris, France
Affiliations: label: 1
institution: Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University
country: France
name: Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Research University , 75005 Paris, France
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: A network theory of the origin of life
Authors: last_name: Hoffmann
first_name: Geoffrey W.
name: Geoffrey W. Hoffmann
Affiliations: institution: Physics Department, University of British Columbia
country: Canada
name: Physics Department, University of British Columbia , Vancouver, BC, Canada V6T 1Z1 hoffmannvancouver@gmail.com 604-734-7521
Field: Physics and Astronomy
Document type: preprint
Year: 2016
Title: Single Cardiac Ventricular Myosins Change Step-Size with Loading
Authors: last_name: Wang
first_name: Yihua
name: Yihua Wang
affiliations: label: 1
institution: Department of Biochemistry and Molecular Biology, Mayo Clinic Rochester
name: Department of Biochemistry and Molecular Biology, Mayo Clinic Rochester , Rochester, MN 55905
last_name: Yuan
first_name: Chen-Ching
name: Chen-Ching Yuan
affiliations: label: 2
institution: Molecular and Cellular Pharmacology University of Miami Miller School of Medicine
name: Molecular and Cellular Pharmacology University of Miami Miller School of Medicine , Miami, FL 33136;
last_name: Kazmierczak
first_name: Katarzyna
name: Katarzyna Kazmierczak
affiliations: label: 2
institution: Molecular and Cellular Pharmacology University of Miami Miller School of Medicine
name: Molecular and Cellular Pharmacology University of Miami Miller School of Medicine , Miami, FL 33136;
last_name: Szczesna-Cordary
first_name: Danuta
name: Danuta Szczesna-Cordary
affiliations: label: 2
institution: Molecular and Cellular Pharmacology University of Miami Miller School of Medicine
name: Molecular and Cellular Pharmacology University of Miami Miller School of Medicine , Miami, FL 33136;
orcid: http://orcid.org/0000-0003-3119-4074
last_name: Burghardt
first_name: Thomas P.
name: Thomas P. Burghardt
corresponding: yes
affiliations: label: 1
institution: Department of Biochemistry and Molecular Biology, Mayo Clinic Rochester
name: Department of Biochemistry and Molecular Biology, Mayo Clinic Rochester , Rochester, MN 55905
label: 3
institution: Department of Physiology and Biomedical Engineering, Mayo Clinic Rochester
name: Department of Physiology and Biomedical Engineering, Mayo Clinic Rochester , Rochester, MN 55905
Affiliations: label: 1
institution: Department of Biochemistry and Molecular Biology, Mayo Clinic Rochester
name: Department of Biochemistry and Molecular Biology, Mayo Clinic Rochester , Rochester, MN 55905
label: 2
institution: Molecular and Cellular Pharmacology University of Miami Miller School of Medicine
name: Molecular and Cellular Pharmacology University of Miami Miller School of Medicine , Miami, FL 33136;
label: 3
institution: Department of Physiology and Biomedical Engineering, Mayo Clinic Rochester
name: Department of Physiology and Biomedical Engineering, Mayo Clinic Rochester , Rochester, MN 55905
Field: Medicine
Document type: preprint
Year: 2017
Title: Activation mechanism of ATP-sensitive K + channels explored with real-time nucleotide binding
Authors: orcid: http://orcid.org/0000-0002-9335-0936
last_name: Puljung
first_name: Michael C.
name: Michael C. Puljung
last_name: Vedovato
first_name: Natascia
name: Natascia Vedovato
last_name: Usher
first_name: Samuel
name: Samuel Usher
last_name: Ashcroft
first_name: Frances M.
name: Frances M. Ashcroft
corresponding: yes
Affiliations: label: 1
institution: Department of Physiology, Anatomy & Genetics
country: UK
name: Department of Physiology, Anatomy & Genetics , University of Oxford, Oxford UK OX1 3PT
Field: Medicine
Document type: preprint
Year: 2018
Title: Signal Variability Reduction and Prior Expectation Generation through Wiring Plasticity
Authors: last_name: Hiratani
first_name: Naoki
name: Naoki Hiratani
affiliations: label: 1
institution: Department of Complexity Science and Engineering
country: Japan
name: Department of Complexity Science and Engineering , The University of Tokyo, Kashiwa, Chiba, Japan
label: 2
institution: Laboratory for Neural Circuit Theory
country: Japan
name: Laboratory for Neural Circuit Theory , RIKEN Brain Science Institute, Wako, Saitama, Japan
notes: E-mail: N.Hiratani@gmail.com
last_name: Fukai
first_name: Tomoki
name: Tomoki Fukai
affiliations: label: 2
institution: Laboratory for Neural Circuit Theory
country: Japan
name: Laboratory for Neural Circuit Theory , RIKEN Brain Science Institute, Wako, Saitama, Japan
Affiliations: label: 1
institution: Department of Complexity Science and Engineering
country: Japan
name: Department of Complexity Science and Engineering , The University of Tokyo, Kashiwa, Chiba, Japan
label: 2
institution: Laboratory for Neural Circuit Theory
country: Japan
name: Laboratory for Neural Circuit Theory , RIKEN Brain Science Institute, Wako, Saitama, Japan
Field: Engineering
Document type: preprint
Year: 2015
Title: Sociality and DNA methylation are not evolutionary dependent
Authors: last_name: Bewick
first_name: Adam J.
name: Adam J. Bewick
corresponding: yes
affiliations: label: 1
institution: Department of Genetics, University of Georgia
country: USA
name: Department of Genetics, University of Georgia , Athens, GA 30602, USA
last_name: Vogel
first_name: Kevin J.
name: Kevin J. Vogel
affiliations: label: 2
institution: Department of Entomology, University of Georgia
country: USA
name: Department of Entomology, University of Georgia , Athens, GA 30602, USA
last_name: Moore
first_name: Allen J.
name: Allen J. Moore
affiliations: label: 1
institution: Department of Genetics, University of Georgia
country: USA
name: Department of Genetics, University of Georgia , Athens, GA 30602, USA
last_name: Schmitz
first_name: Robert J.
name: Robert J. Schmitz
corresponding: yes
affiliations: label: 1
institution: Department of Genetics, University of Georgia
country: USA
name: Department of Genetics, University of Georgia , Athens, GA 30602, USA
Affiliations: label: 1
institution: Department of Genetics, University of Georgia
country: USA
name: Department of Genetics, University of Georgia , Athens, GA 30602, USA
label: 2
institution: Department of Entomology, University of Georgia
country: USA
name: Department of Entomology, University of Georgia , Athens, GA 30602, USA
Field: Agricultural and Biological Sciences
Document type: preprint
Year: 2016
Title: The selective autophagy receptors Optineurin and p62 are both required for innate host defense against mycobacterial infection
Authors: last_name: Zhang
first_name: Rui
name: Rui Zhang
affiliations: label: 1
institution: Institute of Biology Leiden, Leiden University
country: The Netherlands
name: Institute of Biology Leiden, Leiden University , Einsteinweg 55, 2333 CC, Leiden, The Netherlands
orcid: http://orcid.org/0000-0003-0215-9173
last_name: Varela
first_name: Monica
name: Monica Varela
affiliations: label: 1
institution: Institute of Biology Leiden, Leiden University
country: The Netherlands
name: Institute of Biology Leiden, Leiden University , Einsteinweg 55, 2333 CC, Leiden, The Netherlands
orcid: http://orcid.org/0000-0001-6373-7710
last_name: Vallentgoed
first_name: Wies
name: Wies Vallentgoed
affiliations: label: 1
institution: Institute of Biology Leiden, Leiden University
country: The Netherlands
name: Institute of Biology Leiden, Leiden University , Einsteinweg 55, 2333 CC, Leiden, The Netherlands
last_name: van der Vaart
first_name: Michiel
name: Michiel van der Vaart
affiliations: label: 1
institution: Institute of Biology Leiden, Leiden University
country: The Netherlands
name: Institute of Biology Leiden, Leiden University , Einsteinweg 55, 2333 CC, Leiden, The Netherlands
orcid: http://orcid.org/0000-0002-1325-0725
last_name: Meijer
first_name: Annemarie H.
name: Annemarie H. Meijer
corresponding: yes
affiliations: label: 1
institution: Institute of Biology Leiden, Leiden University
country: The Netherlands
name: Institute of Biology Leiden, Leiden University , Einsteinweg 55, 2333 CC, Leiden, The Netherlands
Affiliations: label: 1
institution: Institute of Biology Leiden, Leiden University
country: The Netherlands
name: Institute of Biology Leiden, Leiden University , Einsteinweg 55, 2333 CC, Leiden, The Netherlands
Field: Medicine
Document type: preprint
Year: 2018