dataesr/affiliations-benchmark huggingface dataset:
Title: Working together: cross-priming in two Legionella pneumophila type I-F CRISPR-Cas systems
Authors: last_name: Deecker
first_name: Shayna R.
name: Shayna R. Deecker
affiliations: label: 1
institution: Department of Biochemistry, University of Toronto
country: Canada
name: Department of Biochemistry, University of Toronto , Toronto, Ontario, Canada
orcid: http://orcid.org/0000-0003-0824-3704
last_name: Ensminger
first_name: Alexander W.
name: Alexander W. Ensminger
affiliations: label: 1
institution: Department of Biochemistry, University of Toronto
country: Canada
name: Department of Biochemistry, University of Toronto , Toronto, Ontario, Canada
label: 2
institution: Department of Molecular Genetics, University of Toronto
country: Canada
name: Department of Molecular Genetics, University of Toronto , Toronto, Ontario, Canada
Affiliations: label: 1
institution: Department of Biochemistry, University of Toronto
country: Canada
name: Department of Biochemistry, University of Toronto , Toronto, Ontario, Canada
label: 2
institution: Department of Molecular Genetics, University of Toronto
country: Canada
name: Department of Molecular Genetics, University of Toronto , Toronto, Ontario, Canada
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Interrogating Mutant Allele Expression via Customized Reference Genomes to Define Influential Cancer Mutations
Authors: orcid: http://orcid.org/0000-0001-8459-0068
last_name: Grant
first_name: Adam
name: Adam Grant
affiliations: label: 1
institution: University of Arizona Cancer Center
name: University of Arizona Cancer Center , Tucson AZ 85724
last_name: Vail
first_name: Paris
name: Paris Vail
affiliations: label: 1
institution: University of Arizona Cancer Center
name: University of Arizona Cancer Center , Tucson AZ 85724
orcid: http://orcid.org/0000-0002-3446-4562
last_name: Padi
first_name: Megha
name: Megha Padi
affiliations: label: 1
institution: University of Arizona Cancer Center
name: University of Arizona Cancer Center , Tucson AZ 85724
last_name: Witkiewicz
first_name: Agnieszka K.
name: Agnieszka K. Witkiewicz
corresponding: yes
affiliations: label: 2
institution: Center for Precision Medicine
name: Center for Precision Medicine , Roswell Park Cancer Center, Buffalo NY 14263
last_name: Knudsen
first_name: Erik S.
name: Erik S. Knudsen
corresponding: yes
affiliations: label: 3
institution: Department of Molecular and Cellular Biology
name: Department of Molecular and Cellular Biology , Roswell Park Cancer Center, Buffalo NY 14263
Affiliations: label: 1
institution: University of Arizona Cancer Center
name: University of Arizona Cancer Center , Tucson AZ 85724
label: 2
institution: Center for Precision Medicine
name: Center for Precision Medicine , Roswell Park Cancer Center, Buffalo NY 14263
label: 3
institution: Department of Molecular and Cellular Biology
name: Department of Molecular and Cellular Biology , Roswell Park Cancer Center, Buffalo NY 14263
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: The Immune Deficiency Pathway Attenuates Insulin Signaling to Protect Against Infection
Authors: last_name: Davoodi
first_name: Saeideh
name: Saeideh Davoodi
affiliations: label: 1
institution: Department of Medical Microbiology and Immunology, Faculty of Medicine and Dentistry, University of Alberta
country: Canada
name: Department of Medical Microbiology and Immunology, Faculty of Medicine and Dentistry, University of Alberta , Edmonton Alberta, T6G 2S2, Canada .
last_name: Ferguson
first_name: Meghan
name: Meghan Ferguson
affiliations: label: 1
institution: Department of Medical Microbiology and Immunology, Faculty of Medicine and Dentistry, University of Alberta
country: Canada
name: Department of Medical Microbiology and Immunology, Faculty of Medicine and Dentistry, University of Alberta , Edmonton Alberta, T6G 2S2, Canada .
last_name: Despahnde
first_name: Rujuta
name: Rujuta Despahnde
affiliations: label: 2
institution: Clark H Smith Brain Tumour Centre, Arnie Charbonneau Cancer Institute, Alberta Children’s Hospital Research Institute, and Department of Biochemistry and Molecular Biology Calgary, University of Calgary
country: Canada
name: Clark H Smith Brain Tumour Centre, Arnie Charbonneau Cancer Institute, Alberta Children’s Hospital Research Institute, and Department of Biochemistry and Molecular Biology Calgary, University of Calgary , Alberta T2N 4N1, Canada .
last_name: Grewal
first_name: Savraj
name: Savraj Grewal
affiliations: label: 2
institution: Clark H Smith Brain Tumour Centre, Arnie Charbonneau Cancer Institute, Alberta Children’s Hospital Research Institute, and Department of Biochemistry and Molecular Biology Calgary, University of Calgary
country: Canada
name: Clark H Smith Brain Tumour Centre, Arnie Charbonneau Cancer Institute, Alberta Children’s Hospital Research Institute, and Department of Biochemistry and Molecular Biology Calgary, University of Calgary , Alberta T2N 4N1, Canada .
last_name: Foley
first_name: Edan
name: Edan Foley
corresponding: yes
affiliations: label: 1
institution: Department of Medical Microbiology and Immunology, Faculty of Medicine and Dentistry, University of Alberta
country: Canada
name: Department of Medical Microbiology and Immunology, Faculty of Medicine and Dentistry, University of Alberta , Edmonton Alberta, T6G 2S2, Canada .
Affiliations: label: 1
institution: Department of Medical Microbiology and Immunology, Faculty of Medicine and Dentistry, University of Alberta
country: Canada
name: Department of Medical Microbiology and Immunology, Faculty of Medicine and Dentistry, University of Alberta , Edmonton Alberta, T6G 2S2, Canada .
label: 2
institution: Clark H Smith Brain Tumour Centre, Arnie Charbonneau Cancer Institute, Alberta Children’s Hospital Research Institute, and Department of Biochemistry and Molecular Biology Calgary, University of Calgary
country: Canada
name: Clark H Smith Brain Tumour Centre, Arnie Charbonneau Cancer Institute, Alberta Children’s Hospital Research Institute, and Department of Biochemistry and Molecular Biology Calgary, University of Calgary , Alberta T2N 4N1, Canada .
Field: Immunology and Microbiology
Document type: preprint
Year: 2018
Title: Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing mouse spinal cord
Authors: last_name: Delile
first_name: Julien
name: Julien Delile
notes: These authors contributed equally
orcid: http://orcid.org/0000-0001-5173-1442
last_name: Rayon
first_name: Teresa
name: Teresa Rayon
orcid: http://orcid.org/0000-0001-8929-1104
last_name: Melchionda
first_name: Manuela
name: Manuela Melchionda
last_name: Edwards
first_name: Amelia
name: Amelia Edwards
last_name: Briscoe
first_name: James
name: James Briscoe
corresponding: yes
orcid: http://orcid.org/0000-0001-5698-8191
last_name: Sagner
first_name: Andreas
name: Andreas Sagner
corresponding: yes
notes: These authors contributed equally
Affiliations: institution: The Francis Crick Institute
country: UK
name: The Francis Crick Institute , 1 Midland Road, London NW1 1AT, UK
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Development of an Intrinsic Skin Sensor for Blood Glucose Level with CRISPR-mediated Genome Editing in Epidermal Stem Cells
Authors: last_name: Yue
first_name: Jiping
name: Jiping Yue
last_name: Li
first_name: Yuanyuan
name: Yuanyuan Li
last_name: Gou
first_name: Xuewen
name: Xuewen Gou
orcid: http://orcid.org/0000-0001-6378-3207
last_name: Wu
first_name: Xiaoyang
name: Xiaoyang Wu
corresponding: yes
Affiliations: institution: Ben May Department for Cancer Research, the University of Chicago
name: Ben May Department for Cancer Research, the University of Chicago , Chicago, IL 60637
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Phase-tuned neuronal firing encodes human contextual representations for navigational goals
Authors: orcid: http://orcid.org/0000-0002-3107-3726
last_name: Watrous
first_name: Andrew J
name: Andrew J Watrous
affiliations: label: 1
institution: Department of Biomedical Engineering, Columbia University
name: Department of Biomedical Engineering, Columbia University , New York, NY 10027
last_name: Miller
first_name: Jonathan
name: Jonathan Miller
affiliations: label: 1
institution: Department of Biomedical Engineering, Columbia University
name: Department of Biomedical Engineering, Columbia University , New York, NY 10027
last_name: Qasim
first_name: Salman E
name: Salman E Qasim
affiliations: label: 1
institution: Department of Biomedical Engineering, Columbia University
name: Department of Biomedical Engineering, Columbia University , New York, NY 10027
orcid: http://orcid.org/0000-0002-5962-2678
last_name: Fried
first_name: Itzhak
name: Itzhak Fried
affiliations: label: 2
institution: Department of Neurosurgery, David Geffen School of Medicine and Semel Institute for Neuroscience and Human Behavior, University of California
country: USA
name: Department of Neurosurgery, David Geffen School of Medicine and Semel Institute for Neuroscience and Human Behavior, University of California , Los Angeles, Los Angeles, CA 90095, USA
last_name: Jacobs
first_name: Joshua
name: Joshua Jacobs
affiliations: label: 1
institution: Department of Biomedical Engineering, Columbia University
name: Department of Biomedical Engineering, Columbia University , New York, NY 10027
Affiliations: label: 1
institution: Department of Biomedical Engineering, Columbia University
name: Department of Biomedical Engineering, Columbia University , New York, NY 10027
label: 2
institution: Department of Neurosurgery, David Geffen School of Medicine and Semel Institute for Neuroscience and Human Behavior, University of California
country: USA
name: Department of Neurosurgery, David Geffen School of Medicine and Semel Institute for Neuroscience and Human Behavior, University of California , Los Angeles, Los Angeles, CA 90095, USA
Field: Neuroscience
Document type: preprint
Year: 2017
Title: Developmental loci harbor clusters of accelerated regions that evolved independently in ape lineages
Authors: last_name: Kostka
first_name: Dennis
name: Dennis Kostka
affiliations: label: 1
institution: Departments of Developmental Biology and Computational & Systems Biology, University of Pittsburgh School of Medicine
name: Departments of Developmental Biology and Computational & Systems Biology, University of Pittsburgh School of Medicine , 530 45th Street, Pittsburgh, PA 15201
last_name: Holloway
first_name: Alisha K.
name: Alisha K. Holloway
affiliations: label: 2
institution: Gladstone Institutes
name: Gladstone Institutes , 1650 Owens Street, San Francisco, CA 94158
label: 3
institution: Phylos Bioscience
name: Phylos Bioscience , Portland, OR 97201
label: 4
institution: Division of Bioinformatics, Institute for Human Genetics and Institute for Computational Health Sciences, University of California
name: Division of Bioinformatics, Institute for Human Genetics and Institute for Computational Health Sciences, University of California , San Francisco, CA 94158
last_name: Pollard
first_name: Katherine S.
name: Katherine S. Pollard
corresponding: yes
affiliations: label: 2
institution: Gladstone Institutes
name: Gladstone Institutes , 1650 Owens Street, San Francisco, CA 94158
label: 4
institution: Division of Bioinformatics, Institute for Human Genetics and Institute for Computational Health Sciences, University of California
name: Division of Bioinformatics, Institute for Human Genetics and Institute for Computational Health Sciences, University of California , San Francisco, CA 94158
Affiliations: label: 1
institution: Departments of Developmental Biology and Computational & Systems Biology, University of Pittsburgh School of Medicine
name: Departments of Developmental Biology and Computational & Systems Biology, University of Pittsburgh School of Medicine , 530 45th Street, Pittsburgh, PA 15201
label: 2
institution: Gladstone Institutes
name: Gladstone Institutes , 1650 Owens Street, San Francisco, CA 94158
label: 3
institution: Phylos Bioscience
name: Phylos Bioscience , Portland, OR 97201
label: 4
institution: Division of Bioinformatics, Institute for Human Genetics and Institute for Computational Health Sciences, University of California
name: Division of Bioinformatics, Institute for Human Genetics and Institute for Computational Health Sciences, University of California , San Francisco, CA 94158
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Back-translating a rodent measure of negative bias into humans: the impact of induced anxiety and unmedicated mood and anxiety disorders
Authors: last_name: Aylward
first_name: Jessica
name: Jessica Aylward
affiliations: label: 1
institution: Institute of Cognitive Neuroscience, 17 – 19 Queen Square, University College London
name: Institute of Cognitive Neuroscience, 17 – 19 Queen Square, University College London , WC1N 3AZ.
last_name: Hales
first_name: Claire
name: Claire Hales
affiliations: label: 2
institution: School of Physiology and Pharmacology, Biomedical Sciences Building, University Walk, University of Bristol
name: School of Physiology and Pharmacology, Biomedical Sciences Building, University Walk, University of Bristol , BS8 1TD.
last_name: Robinson
first_name: Emma
name: Emma Robinson
affiliations: label: 2
institution: School of Physiology and Pharmacology, Biomedical Sciences Building, University Walk, University of Bristol
name: School of Physiology and Pharmacology, Biomedical Sciences Building, University Walk, University of Bristol , BS8 1TD.
last_name: Robinson
first_name: Oliver J
name: Oliver J Robinson
affiliations: label: 1
institution: Institute of Cognitive Neuroscience, 17 – 19 Queen Square, University College London
name: Institute of Cognitive Neuroscience, 17 – 19 Queen Square, University College London , WC1N 3AZ.
Affiliations: label: 1
institution: Institute of Cognitive Neuroscience, 17 – 19 Queen Square, University College London
name: Institute of Cognitive Neuroscience, 17 – 19 Queen Square, University College London , WC1N 3AZ.
label: 2
institution: School of Physiology and Pharmacology, Biomedical Sciences Building, University Walk, University of Bristol
name: School of Physiology and Pharmacology, Biomedical Sciences Building, University Walk, University of Bristol , BS8 1TD.
Field: Psychology
Document type: preprint
Year: 2017
Title: MiR-505-3p is a Repressor of the Puberty Onset in Female Mice miR-505-3p and the puberty onset
Authors: orcid: http://orcid.org/0000-0001-5531-8612
last_name: Zhou
first_name: Yuxun
name: Yuxun Zhou
last_name: Tong
first_name: Li
name: Li Tong
orcid: http://orcid.org/0000-0002-6056-1606
last_name: Wang
first_name: Maochun
name: Maochun Wang
last_name: Chang
first_name: Xueying
name: Xueying Chang
last_name: Wang
first_name: Sijia
name: Sijia Wang
last_name: Li
first_name: Kai
name: Kai Li
last_name: Xiao
first_name: Junhua
name: Junhua Xiao
corresponding: yes
Affiliations: institution: The College of Chemistry, Chemical Engineering & Biotechnology, Donghua University
country: China
name: The College of Chemistry, Chemical Engineering & Biotechnology, Donghua University , 2999 North Renmin Road, Songjiang, 200237 Shanghai, China
Field: Medicine
Document type: preprint
Year: 2018
Title: Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation
Authors: orcid: http://orcid.org/0000-0001-8401-0545
last_name: Love
first_name: Michael I.
name: Michael I. Love
orcid: http://orcid.org/0000-0001-8401-0545
last_name: Hogenesch
first_name: John B.
name: John B. Hogenesch
orcid: http://orcid.org/0000-0001-8401-0545
last_name: Irizarry
first_name: Rafael A.
name: Rafael A. Irizarry
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2015
Title: Bacillus thuringiensis targets the host intestinal epithelial junctions for successful infection of Caenorhabditis elegans
Authors: last_name: Wan
first_name: Liting
name: Liting Wan
affiliations: label: 1
institution: State Key Laboratory of Agricultural Microbiology
name: State Key Laboratory of Agricultural Microbiology , Huazhong Agricultural University, Wuhan 430070, Hubei, People’s Republic of China
notes: Their contributions are equally to this work.
last_name: Lin
first_name: Jian
name: Jian Lin
affiliations: label: 1
institution: State Key Laboratory of Agricultural Microbiology
name: State Key Laboratory of Agricultural Microbiology , Huazhong Agricultural University, Wuhan 430070, Hubei, People’s Republic of China
notes: Their contributions are equally to this work.
last_name: Du
first_name: Hongwen
name: Hongwen Du
affiliations: label: 1
institution: State Key Laboratory of Agricultural Microbiology
name: State Key Laboratory of Agricultural Microbiology , Huazhong Agricultural University, Wuhan 430070, Hubei, People’s Republic of China
last_name: Bravo
first_name: Alejandra
name: Alejandra Bravo
affiliations: label: 2
institution: Instituto de Biotecnología, Universidad Nacional Autónoma de México
country: Mexico
name: Instituto de Biotecnología, Universidad Nacional Autónoma de México , Apdo. postal 510-3, Cuernavaca 62250 Morelos, Mexico
last_name: Soberón
first_name: Mario
name: Mario Soberón
affiliations: label: 2
institution: Instituto de Biotecnología, Universidad Nacional Autónoma de México
country: Mexico
name: Instituto de Biotecnología, Universidad Nacional Autónoma de México , Apdo. postal 510-3, Cuernavaca 62250 Morelos, Mexico
last_name: Peng
first_name: Donghai
name: Donghai Peng
corresponding: yes
affiliations: label: 1
institution: State Key Laboratory of Agricultural Microbiology
name: State Key Laboratory of Agricultural Microbiology , Huazhong Agricultural University, Wuhan 430070, Hubei, People’s Republic of China
orcid: http://orcid.org/0000-0001-5465-5983
last_name: Sun
first_name: Ming
name: Ming Sun
corresponding: yes
affiliations: label: 1
institution: State Key Laboratory of Agricultural Microbiology
name: State Key Laboratory of Agricultural Microbiology , Huazhong Agricultural University, Wuhan 430070, Hubei, People’s Republic of China
Affiliations: label: 1
institution: State Key Laboratory of Agricultural Microbiology
name: State Key Laboratory of Agricultural Microbiology , Huazhong Agricultural University, Wuhan 430070, Hubei, People’s Republic of China
label: 2
institution: Instituto de Biotecnología, Universidad Nacional Autónoma de México
country: Mexico
name: Instituto de Biotecnología, Universidad Nacional Autónoma de México , Apdo. postal 510-3, Cuernavaca 62250 Morelos, Mexico
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Dot6 is a major regulator of cell size and a transcriptional activator of ribosome biogenesis in the opportunistic yeast Candida albicans
Authors: last_name: Chaillot
first_name: Julien
name: Julien Chaillot
affiliations: label: *
institution: CHU de Québec Research Center (CHUQ), Université Laval
country: Canada
name: * CHU de Québec Research Center (CHUQ), Université Laval , Quebec City, QC, Canada
last_name: Malick
first_name: Jaideep
name: Jaideep Malick
affiliations: label: †
institution: Department of Biology, Concordia University
country: Canada
name: † Department of Biology, Concordia University , Montréal, Quebec, Canada
notes: Present address: Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada
orcid: http://orcid.org/0000-0002-0506-7752
last_name: Sellam
first_name: Adnane
name: Adnane Sellam
corresponding: yes
affiliations: label: *
institution: CHU de Québec Research Center (CHUQ), Université Laval
country: Canada
name: * CHU de Québec Research Center (CHUQ), Université Laval , Quebec City, QC, Canada
label: ‡
institution: Department of Microbiology, Infectious Disease and Immunology, Faculty of Medicine, Université Laval
country: Canada
name: ‡ Department of Microbiology, Infectious Disease and Immunology, Faculty of Medicine, Université Laval , Quebec City, QC, Canada
Affiliations: label: *
institution: CHU de Québec Research Center (CHUQ), Université Laval
country: Canada
name: * CHU de Québec Research Center (CHUQ), Université Laval , Quebec City, QC, Canada
label: †
institution: Department of Biology, Concordia University
country: Canada
name: † Department of Biology, Concordia University , Montréal, Quebec, Canada
label: ‡
institution: Department of Microbiology, Infectious Disease and Immunology, Faculty of Medicine, Université Laval
country: Canada
name: ‡ Department of Microbiology, Infectious Disease and Immunology, Faculty of Medicine, Université Laval , Quebec City, QC, Canada
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: The Sheep and the Goats: Distinguishing transcriptional enhancers in a complex chromatin landscape
Authors: last_name: Sonnenschein
first_name: Anne
name: Anne Sonnenschein
affiliations: label: *
institution: Schmid College of Science and Technology, Chapman University
name: * Schmid College of Science and Technology, Chapman University
last_name: Dworkin
first_name: Ian
name: Ian Dworkin
affiliations: label: †
institution: Department of Biology, McMaster University
name: † Department of Biology, McMaster University
last_name: Arnosti
first_name: David N.
name: David N. Arnosti
affiliations: label: ‡
institution: Michigan State University Dept. Biochemistry and Molecular Biology
name: ‡ Michigan State University Dept. Biochemistry and Molecular Biology
Affiliations: label: *
institution: Schmid College of Science and Technology, Chapman University
name: * Schmid College of Science and Technology, Chapman University
label: †
institution: Department of Biology, McMaster University
name: † Department of Biology, McMaster University
label: ‡
institution: Michigan State University Dept. Biochemistry and Molecular Biology
name: ‡ Michigan State University Dept. Biochemistry and Molecular Biology
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Epigenetic signatures associated with imprinted paternally-expressed genes in the Arabidopsis endosperm
Authors: orcid: http://orcid.org/0000-0002-7352-1507
last_name: Moreno-Romero
first_name: Jordi
name: Jordi Moreno-Romero
notes: Present address: Centre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra, Barcelona, Spain
orcid: http://orcid.org/0000-0003-2079-1746
last_name: León
first_name: Gerardo Del Toro-De
name: Gerardo Del Toro-De León
orcid: http://orcid.org/0000-0002-9581-5127
last_name: Yadav
first_name: Vikash Kumar
name: Vikash Kumar Yadav
last_name: Santos-González
first_name: Juan
name: Juan Santos-González
orcid: http://orcid.org/0000-0002-2619-4857
last_name: Köhler
first_name: Claudia
name: Claudia Köhler
corresponding: yes
Affiliations: institution: Department of Plant Biology
country: Sweden
name: Department of Plant Biology , Uppsala BioCenter, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Uppsala, Sweden
Field: Agricultural and Biological Sciences
Document type: preprint
Year: 2018
Title: Tendon slack length is the primary determinant of plantarflexor muscle-tendon function in computational simulations of gait
Authors: orcid: http://orcid.org/0000-0003-0269-2170
last_name: Baxter
first_name: Josh R.
name: Josh R. Baxter
corresponding: yes
orcid: http://orcid.org/0000-0002-0351-9196
last_name: Hast
first_name: Michael W.
name: Michael W. Hast
Affiliations: institution: Department of Orthopaedic Surgery, University of Pennsylvania
country: USA
name: Department of Orthopaedic Surgery, University of Pennsylvania , Philadelphia, PA USA
Field: Engineering
Document type: preprint
Year: 2018