dataesr/affiliations-benchmark huggingface dataset:
Title: Interactive analysis of Long-read RNA isoforms with Iso-Seq Browser
Authors: last_name: Hu
first_name: Jingyuan
name: Jingyuan Hu
affiliations: label: 1
institution: The Computational Biology Institute, George Washington University
name: The Computational Biology Institute, George Washington University , Innovation Hall, 45085 University Drive, Suite 305, Ashburn, VA, 20147
last_name: Uapinyoying
first_name: Prech
name: Prech Uapinyoying
affiliations: label: 2
institution: Department of Integrative Systems Biology, George Washington University
name: Department of Integrative Systems Biology, George Washington University , 111 Michigan Ave NW, Washington, D.C., 20010
label: 3
institution: Research for Genetic Medicine, Children’s National Medical Center
name: Research for Genetic Medicine, Children’s National Medical Center , 111 Michigan Ave NW, Washington, D.C., 20010
last_name: Goecks
first_name: Jeremy
name: Jeremy Goecks
corresponding: yes
affiliations: label: 1
institution: The Computational Biology Institute, George Washington University
name: The Computational Biology Institute, George Washington University , Innovation Hall, 45085 University Drive, Suite 305, Ashburn, VA, 20147
label: 2
institution: Department of Integrative Systems Biology, George Washington University
name: Department of Integrative Systems Biology, George Washington University , 111 Michigan Ave NW, Washington, D.C., 20010
Affiliations: label: 1
institution: The Computational Biology Institute, George Washington University
name: The Computational Biology Institute, George Washington University , Innovation Hall, 45085 University Drive, Suite 305, Ashburn, VA, 20147
label: 2
institution: Department of Integrative Systems Biology, George Washington University
name: Department of Integrative Systems Biology, George Washington University , 111 Michigan Ave NW, Washington, D.C., 20010
label: 3
institution: Research for Genetic Medicine, Children’s National Medical Center
name: Research for Genetic Medicine, Children’s National Medical Center , 111 Michigan Ave NW, Washington, D.C., 20010
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Global analysis of specificity determinants in eukaryotic protein kinases
Authors: last_name: Bradley
first_name: David
name: David Bradley
affiliations: label: 1
institution: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)
country: UK
name: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Wellcome Genome Campus, Cambridge CB10 1SD, UK
last_name: Viéitez
first_name: Cristina
name: Cristina Viéitez
affiliations: label: 2
institution: European Molecular Biology Laboratory (EMBL), Genome Biology Unit
country: Germany
name: European Molecular Biology Laboratory (EMBL), Genome Biology Unit , 69117 Heidelberg, Germany
last_name: Rajeeve
first_name: Vinothini
name: Vinothini Rajeeve
affiliations: label: 3
institution: Integrative Cell Signalling & Proteomics, Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London
name: Integrative Cell Signalling & Proteomics, Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London , Charterhouse Square, London, EC1M 6BQ
last_name: Cutillas
first_name: Pedro R.
name: Pedro R. Cutillas
affiliations: label: 3
institution: Integrative Cell Signalling & Proteomics, Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London
name: Integrative Cell Signalling & Proteomics, Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London , Charterhouse Square, London, EC1M 6BQ
orcid: http://orcid.org/0000-0002-2724-7703
last_name: Beltrao
first_name: Pedro
name: Pedro Beltrao
corresponding: yes
affiliations: label: 1
institution: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)
country: UK
name: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Wellcome Genome Campus, Cambridge CB10 1SD, UK
Affiliations: label: 1
institution: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)
country: UK
name: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Wellcome Genome Campus, Cambridge CB10 1SD, UK
label: 2
institution: European Molecular Biology Laboratory (EMBL), Genome Biology Unit
country: Germany
name: European Molecular Biology Laboratory (EMBL), Genome Biology Unit , 69117 Heidelberg, Germany
label: 3
institution: Integrative Cell Signalling & Proteomics, Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London
name: Integrative Cell Signalling & Proteomics, Centre for Haemato-Oncology, Barts Cancer Institute, Queen Mary University of London , Charterhouse Square, London, EC1M 6BQ
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Every which way? On predicting tumor evolution using cancer progression models
Authors: orcid: http://orcid.org/0000-0002-6637-9039
last_name: Diaz-Uriarte
first_name: Ramon
name: Ramon Diaz-Uriarte
corresponding: yes
last_name: Vega
first_name: Claudia Vasallo
name: Claudia Vasallo Vega
Affiliations: institution: Dept. Biochemistry, Universidad Autónoma de Madrid, Instituto de Investigaciones Biomédicas “Alberto Sols” (UAM-CSIC)
country: Spain
name: Dept. Biochemistry, Universidad Autónoma de Madrid, Instituto de Investigaciones Biomédicas “Alberto Sols” (UAM-CSIC) , Madrid, Spain
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Bridging the translational gap: Implementation of multimodal small animal imaging strategies for tumor burden assessment in a co-clinical trial
Authors: last_name: Blocker
first_name: S.J.
name: S.J. Blocker
affiliations: label: 1
institution: Center for In Vivo Microscopy, Duke University Medical Center
name: Center for In Vivo Microscopy, Duke University Medical Center , Durham, NC 27710
last_name: Mowery
first_name: Y.M.
name: Y.M. Mowery
affiliations: label: 2
institution: Department of Radiation Oncology, Duke University Medical Center
name: Department of Radiation Oncology, Duke University Medical Center , Durham, NC, 27710
last_name: Holbrook
first_name: M. D.
name: M. D. Holbrook
affiliations: label: 1
institution: Center for In Vivo Microscopy, Duke University Medical Center
name: Center for In Vivo Microscopy, Duke University Medical Center , Durham, NC 27710
last_name: Qi
first_name: Y.
name: Y. Qi
affiliations: label: 1
institution: Center for In Vivo Microscopy, Duke University Medical Center
name: Center for In Vivo Microscopy, Duke University Medical Center , Durham, NC 27710
last_name: Kirsch
first_name: D.G.
name: D.G. Kirsch
affiliations: label: 2
institution: Department of Radiation Oncology, Duke University Medical Center
name: Department of Radiation Oncology, Duke University Medical Center , Durham, NC, 27710
label: 3
institution: Department of Pharmacology & Cancer Biology, Duke University Medical Center
name: Department of Pharmacology & Cancer Biology, Duke University Medical Center , Durham, NC, 27710
last_name: Johnson
first_name: G.A.
name: G.A. Johnson
affiliations: label: 1
institution: Center for In Vivo Microscopy, Duke University Medical Center
name: Center for In Vivo Microscopy, Duke University Medical Center , Durham, NC 27710
orcid: http://orcid.org/0000-0002-1850-2522
last_name: Badea
first_name: C.T.
name: C.T. Badea
corresponding: yes
affiliations: label: 1
institution: Center for In Vivo Microscopy, Duke University Medical Center
name: Center for In Vivo Microscopy, Duke University Medical Center , Durham, NC 27710
Affiliations: label: 1
institution: Center for In Vivo Microscopy, Duke University Medical Center
name: Center for In Vivo Microscopy, Duke University Medical Center , Durham, NC 27710
label: 2
institution: Department of Radiation Oncology, Duke University Medical Center
name: Department of Radiation Oncology, Duke University Medical Center , Durham, NC, 27710
label: 3
institution: Department of Pharmacology & Cancer Biology, Duke University Medical Center
name: Department of Pharmacology & Cancer Biology, Duke University Medical Center , Durham, NC, 27710
Field: Medicine
Document type: preprint
Year: 2018
Title: Chemerin Induced by Treponema pallidum Predicted Membrane Protein Tp0965 Mediates Endothelial Dysfunction via Activating MAPK Signaling Pathway
Authors: orcid: http://orcid.org/0000-0001-7364-4649
last_name: Zhang
first_name: Rui-Li
name: Rui-Li Zhang
affiliations: label: 1
institution: Department of Dermatology
country: China
name: Department of Dermatology , Affiliated Wuxi NO.2 People’s Hospital of Nanjing Medical University, 214002 Wuxi, China
last_name: Yang
first_name: Li-Jia
name: Li-Jia Yang
affiliations: label: 1
institution: Department of Dermatology
country: China
name: Department of Dermatology , Affiliated Wuxi NO.2 People’s Hospital of Nanjing Medical University, 214002 Wuxi, China
last_name: Wang
first_name: Qian-Qiu
name: Qian-Qiu Wang
corresponding: yes
affiliations: label: 2
institution: National Center for STD Control and Prevention
country: China
name: National Center for STD Control and Prevention , China Centers for Diseases Control and Prevention, Institute of Dermatology, Chinese Academy of Medical Sciences, 210042 Nanjing, China
Affiliations: label: 1
institution: Department of Dermatology
country: China
name: Department of Dermatology , Affiliated Wuxi NO.2 People’s Hospital of Nanjing Medical University, 214002 Wuxi, China
label: 2
institution: National Center for STD Control and Prevention
country: China
name: National Center for STD Control and Prevention , China Centers for Diseases Control and Prevention, Institute of Dermatology, Chinese Academy of Medical Sciences, 210042 Nanjing, China
Field: Medicine
Document type: preprint
Year: 2018
Title: Transgenic Mice and Pluripotent Stem Cells Express EGFP under the Control of miR-302 Promoter
Authors: orcid: http://orcid.org/0000-0003-2566-3751
last_name: Rahimi
first_name: Karim
name: Karim Rahimi
affiliations: label: 1
institution: Department of Molecular Biology and Genetics, Aarhus University
country: Denmark
name: Department of Molecular Biology and Genetics, Aarhus University , Aarhus, Denmark
last_name: Parsa
first_name: Sara
name: Sara Parsa
affiliations: label: 2
institution: Molecular Genetics Department, Faculty of Biological Sciences, Tarbiat Modares University
country: Iran
name: Molecular Genetics Department, Faculty of Biological Sciences, Tarbiat Modares University , Tehran, Iran
last_name: Nikzaban
first_name: Mehrnoush
name: Mehrnoush Nikzaban
affiliations: label: 3
institution: Department of Biological Sciences and Biotechnology, Faculty of Science, University of Kurdistan
country: Iran
name: Department of Biological Sciences and Biotechnology, Faculty of Science, University of Kurdistan , Sanandaj, Iran
last_name: Mowla
first_name: Seyed Javad
name: Seyed Javad Mowla
affiliations: label: 2
institution: Molecular Genetics Department, Faculty of Biological Sciences, Tarbiat Modares University
country: Iran
name: Molecular Genetics Department, Faculty of Biological Sciences, Tarbiat Modares University , Tehran, Iran
last_name: Fathi
first_name: Fardin
name: Fardin Fathi
corresponding: yes
affiliations: label: 4
institution: Cellular and Molecular Research Center, Research Institute for Health Development, Kurdistan University of Medical Sciences
country: Iran
name: Cellular and Molecular Research Center, Research Institute for Health Development, Kurdistan University of Medical Sciences , Sanandaj, Iran
Affiliations: label: 1
institution: Department of Molecular Biology and Genetics, Aarhus University
country: Denmark
name: Department of Molecular Biology and Genetics, Aarhus University , Aarhus, Denmark
label: 2
institution: Molecular Genetics Department, Faculty of Biological Sciences, Tarbiat Modares University
country: Iran
name: Molecular Genetics Department, Faculty of Biological Sciences, Tarbiat Modares University , Tehran, Iran
label: 3
institution: Department of Biological Sciences and Biotechnology, Faculty of Science, University of Kurdistan
country: Iran
name: Department of Biological Sciences and Biotechnology, Faculty of Science, University of Kurdistan , Sanandaj, Iran
label: 4
institution: Cellular and Molecular Research Center, Research Institute for Health Development, Kurdistan University of Medical Sciences
country: Iran
name: Cellular and Molecular Research Center, Research Institute for Health Development, Kurdistan University of Medical Sciences , Sanandaj, Iran
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Ranking quantitative resistance to Septoria tritici blotch in elite wheat cultivars using automated image analysis
Authors: last_name: Karisto
first_name: Petteri
name: Petteri Karisto
corresponding: yes
affiliations: label: 1
institution: Plant Pathology Group
country: Switzerland
name: Plant Pathology Group , Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
last_name: Hund
first_name: Andreas
name: Andreas Hund
affiliations: label: 2
institution: Crop Science Group, Institute of Integrative Biology
country: Switzerland
name: Crop Science Group, Institute of Integrative Biology , ETH Zurich, Zurich, Switzerland
last_name: Yu
first_name: Kang
name: Kang Yu
affiliations: label: 2
institution: Crop Science Group, Institute of Integrative Biology
country: Switzerland
name: Crop Science Group, Institute of Integrative Biology , ETH Zurich, Zurich, Switzerland
last_name: Anderegg
first_name: Jonas
name: Jonas Anderegg
affiliations: label: 2
institution: Crop Science Group, Institute of Integrative Biology
country: Switzerland
name: Crop Science Group, Institute of Integrative Biology , ETH Zurich, Zurich, Switzerland
last_name: Walter
first_name: Achim
name: Achim Walter
affiliations: label: 2
institution: Crop Science Group, Institute of Integrative Biology
country: Switzerland
name: Crop Science Group, Institute of Integrative Biology , ETH Zurich, Zurich, Switzerland
last_name: Mascher
first_name: Fabio
name: Fabio Mascher
affiliations: label: 3
institution: Plant Breeding and Genetic Resources, Institute for Plant Production Sciences
country: Switzerland
name: Plant Breeding and Genetic Resources, Institute for Plant Production Sciences , Agroscope, Nyon, Switzerland
last_name: McDonald
first_name: Bruce A.
name: Bruce A. McDonald
affiliations: label: 1
institution: Plant Pathology Group
country: Switzerland
name: Plant Pathology Group , Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
last_name: Mikaberidze
first_name: Alexey
name: Alexey Mikaberidze
affiliations: label: 1
institution: Plant Pathology Group
country: Switzerland
name: Plant Pathology Group , Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
Affiliations: label: 1
institution: Plant Pathology Group
country: Switzerland
name: Plant Pathology Group , Institute of Integrative Biology, ETH Zurich, Zurich, Switzerland
label: 2
institution: Crop Science Group, Institute of Integrative Biology
country: Switzerland
name: Crop Science Group, Institute of Integrative Biology , ETH Zurich, Zurich, Switzerland
label: 3
institution: Plant Breeding and Genetic Resources, Institute for Plant Production Sciences
country: Switzerland
name: Plant Breeding and Genetic Resources, Institute for Plant Production Sciences , Agroscope, Nyon, Switzerland
Field: Agricultural and Biological Sciences
Document type: preprint
Year: 2017
Title: Viruses are a dominant driver of protein adaptation in mammals
Authors: last_name: Enard
first_name: David
name: David Enard
affiliations: label: 1
institution: Department of Biology, Stanford University
country: USA
name: Department of Biology, Stanford University , Stanford, CA 94305, USA
notes: Contact information: denard@stanford.edu
last_name: Cai
first_name: Le
name: Le Cai
affiliations: label: 1
institution: Department of Biology, Stanford University
country: USA
name: Department of Biology, Stanford University , Stanford, CA 94305, USA
last_name: Gwenapp
first_name: Carina
name: Carina Gwenapp
affiliations: label: 1
institution: Department of Biology, Stanford University
country: USA
name: Department of Biology, Stanford University , Stanford, CA 94305, USA
last_name: Petrov
first_name: Dmitri A.
name: Dmitri A. Petrov
affiliations: label: 1
institution: Department of Biology, Stanford University
country: USA
name: Department of Biology, Stanford University , Stanford, CA 94305, USA
Affiliations: label: 1
institution: Department of Biology, Stanford University
country: USA
name: Department of Biology, Stanford University , Stanford, CA 94305, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2015
Title: Limited One-time Sampling Irregularity Age Map (LOTS-IAM): Automatic Unsupervised Detection of Brain White Matter Abnormalities in Structural Magnetic Resonance Images
Authors: orcid: http://orcid.org/0000-0003-1672-9149
last_name: Rachmadi
first_name: Muhammad Febrian
name: Muhammad Febrian Rachmadi
affiliations: label: a
institution: School of Informatics, University of Edinburgh
country: UK
name: School of Informatics, University of Edinburgh , Edinburgh, UK
label: b
institution: Centre for Clinical Brain Sciences, University of Edinburgh
country: UK
name: Centre for Clinical Brain Sciences, University of Edinburgh , Edinburgh, UK
orcid: http://orcid.org/0000-0003-2771-6546
last_name: Valdés-Hernández
first_name: Maria del C.
name: Maria del C. Valdés-Hernández
affiliations: label: b
institution: Centre for Clinical Brain Sciences, University of Edinburgh
country: UK
name: Centre for Clinical Brain Sciences, University of Edinburgh , Edinburgh, UK
last_name: Li
first_name: Hongwei
name: Hongwei Li
affiliations: label: c
institution: Computing, School of Science and Engineering, University of Dundee
country: UK
name: Computing, School of Science and Engineering, University of Dundee , Dundee, UK
last_name: Moreno
first_name: Ricardo Enrique Guerrero
name: Ricardo Enrique Guerrero Moreno
affiliations: label: d
institution: Department of Computing, Imperial College London
country: UK
name: Department of Computing, Imperial College London , London, UK
last_name: Zhang
first_name: Jianguo
name: Jianguo Zhang
affiliations: label: c
institution: Computing, School of Science and Engineering, University of Dundee
country: UK
name: Computing, School of Science and Engineering, University of Dundee , Dundee, UK
last_name: Rueckert
first_name: Daniel
name: Daniel Rueckert
affiliations: label: d
institution: Department of Computing, Imperial College London
country: UK
name: Department of Computing, Imperial College London , London, UK
last_name: Komura
first_name: Taku
name: Taku Komura
affiliations: label: a
institution: School of Informatics, University of Edinburgh
country: UK
name: School of Informatics, University of Edinburgh , Edinburgh, UK
Affiliations: label: a
institution: School of Informatics, University of Edinburgh
country: UK
name: School of Informatics, University of Edinburgh , Edinburgh, UK
label: b
institution: Centre for Clinical Brain Sciences, University of Edinburgh
country: UK
name: Centre for Clinical Brain Sciences, University of Edinburgh , Edinburgh, UK
label: c
institution: Computing, School of Science and Engineering, University of Dundee
country: UK
name: Computing, School of Science and Engineering, University of Dundee , Dundee, UK
label: d
institution: Department of Computing, Imperial College London
country: UK
name: Department of Computing, Imperial College London , London, UK
Field: Medicine
Document type: preprint
Year: 2018
Title: Predicting functional networks from region connectivity profiles in task-based versus resting-state fMRI data
Authors: orcid: http://orcid.org/0000-0003-1661-2856
last_name: Rasero
first_name: Javier
name: Javier Rasero
affiliations: label: 1
institution: Biocruces Health Research Institute. Hospital Universitario de Cruces
country: Spain
name: Biocruces Health Research Institute. Hospital Universitario de Cruces . E-48903, Barakaldo, Spain .
orcid: http://orcid.org/0000-0002-8806-7482
last_name: Aerts
first_name: Hannelore
name: Hannelore Aerts
affiliations: label: 2
institution: Faculty of Psychology and Educational Sciences, Department of Data Analysis, Ghent University
country: Belgium
name: Faculty of Psychology and Educational Sciences, Department of Data Analysis, Ghent University , Henri Dunantlaan 1, B-9000 Ghent, Belgium
last_name: Cortes
first_name: Jesus M.
name: Jesus M. Cortes
affiliations: label: 1
institution: Biocruces Health Research Institute. Hospital Universitario de Cruces
country: Spain
name: Biocruces Health Research Institute. Hospital Universitario de Cruces . E-48903, Barakaldo, Spain .
label: 3
institution: Ikerbasque, The Basque Foundation for Science
country: Spain
name: Ikerbasque, The Basque Foundation for Science , E-48011, Bilbao, Spain .
orcid: http://orcid.org/0000-0002-5873-8564
last_name: Stramaglia
first_name: Sebastiano
name: Sebastiano Stramaglia
affiliations: label: 4
institution: Dipartimento di Fisica, Universitá degli Studi
country: Italy
name: Dipartimento di Fisica, Universitá degli Studi “Aldo Moro” Bari, Italy
label: 5
institution: Istituto Nazionale di Fisica Nucleare
country: Italy
name: Istituto Nazionale di Fisica Nucleare , Sezione di Bari, Italy
orcid: http://orcid.org/0000-0002-9803-0122
last_name: Marinazzo
first_name: Daniele
name: Daniele Marinazzo
affiliations: label: 2
institution: Faculty of Psychology and Educational Sciences, Department of Data Analysis, Ghent University
country: Belgium
name: Faculty of Psychology and Educational Sciences, Department of Data Analysis, Ghent University , Henri Dunantlaan 1, B-9000 Ghent, Belgium
Affiliations: label: 1
institution: Biocruces Health Research Institute. Hospital Universitario de Cruces
country: Spain
name: Biocruces Health Research Institute. Hospital Universitario de Cruces . E-48903, Barakaldo, Spain .
label: 2
institution: Faculty of Psychology and Educational Sciences, Department of Data Analysis, Ghent University
country: Belgium
name: Faculty of Psychology and Educational Sciences, Department of Data Analysis, Ghent University , Henri Dunantlaan 1, B-9000 Ghent, Belgium
label: 3
institution: Ikerbasque, The Basque Foundation for Science
country: Spain
name: Ikerbasque, The Basque Foundation for Science , E-48011, Bilbao, Spain .
label: 4
institution: Dipartimento di Fisica, Universitá degli Studi
country: Italy
name: Dipartimento di Fisica, Universitá degli Studi “Aldo Moro” Bari, Italy
label: 5
institution: Istituto Nazionale di Fisica Nucleare
country: Italy
name: Istituto Nazionale di Fisica Nucleare , Sezione di Bari, Italy
Field: Neuroscience
Document type: preprint
Year: 2018