Title: SVclone: inferring structural variant cancer cell fraction
Authors: orcid: http://orcid.org/0000-0001-7783-5530
last_name: Cmero
first_name: Marek
name: Marek Cmero
corresponding: yes
affiliations: label: 1
institution: Department of Surgery, Division of Urology, Royal Melbourne Hospital and University of Melbourne
country: Australia
name: Department of Surgery, Division of Urology, Royal Melbourne Hospital and University of Melbourne , Parkville 3050, Victoria, Australia
label: 2
institution: The Epworth Prostate Centre, Epworth Hospital
country: Australia
name: The Epworth Prostate Centre, Epworth Hospital , Richmond 3121, Victoria, Australia
label: 3
institution: Department of Computing and Information Systems, University of Melbourne
country: Australia
name: Department of Computing and Information Systems, University of Melbourne , Parkville 3010, Victoria, Australia
label: 4
institution: Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research
country: Australia
name: Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research , Parkville, Victoria, Australia
orcid: http://orcid.org/0000-0002-2302-9733
last_name: Ong
first_name: Cheng Soon
name: Cheng Soon Ong
affiliations: label: 6
institution: Electrical and Electronic Engineering, University of Melbourne
country: Australia
name: Electrical and Electronic Engineering, University of Melbourne , Parkville, Victoria 3010, Australia
label: 7
institution: Machine Learning Research Group
country: Australia
name: Machine Learning Research Group , Data61, Canberra 2601, Australia
label: 8
institution: Research School of Computer Science, Australian National University
country: Australia
name: Research School of Computer Science, Australian National University , Canberra 2601, Australia
last_name: Yuan
first_name: Ke
name: Ke Yuan
affiliations: label: 5
institution: Cancer Research UK Cambridge Institute, University of Cambridge
country: UK
name: Cancer Research UK Cambridge Institute, University of Cambridge , Cambridge CB2 0RE, UK
notes: Current address: School of Computing Science, University of Glasgow, Sir Alwyn Williams Building, Glasgow, G12 8RZ, UK
last_name: Schröder
first_name: Jan
name: Jan Schröder
affiliations: label: 4
institution: Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research
country: Australia
name: Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research , Parkville, Victoria, Australia
last_name: Mo
first_name: Kangbo
name: Kangbo Mo
affiliations: label: 3
institution: Department of Computing and Information Systems, University of Melbourne
country: Australia
name: Department of Computing and Information Systems, University of Melbourne , Parkville 3010, Victoria, Australia
notes: Members of the PCAWG Evolution and Heterogeneity Working Group: Pavana Anur, Rameen Beroukhim, Paul Boutros, David D. Bowtell, Peter Campbell, Elizabeth L. Christie, Marek Cmero, Yupeng Cun, Kevin Dawson, Jonas Demeulemeester, Stefan C. Dentro, Amit Deshwar, Nilgun Donmez, Roland Eils, Yu Fan, Matthew Fittall, Dale W. Garsed, Moritz Gerstung, Gad Getz, Santiago Gonzalez, Gavin Ha, Kerstin Haase, Marcin Imielinski, Yuan Ji, Clemency Jolly, Kortine A. Kleinheinz, Juhee Lee, Henry Lee-Six, Ignaty Leshchiner, Dimitri G. Livitz, Geoff Macintyre, Salem Malikic, Florian Markowetz, Inigo Martincorena, Thomas J. Mitchell, Quaid Morris, Ville Mustonen, Layla Oesper, Martin Peifer, Myron Peto, Benjamin J. Raphael, Daniel Rosebrock, Yulia Rubanova, S. Cenk Sahinalp, Adriana Salcedo, Matthias Schlesner, Steve Schumacher, Subhajit Sengupta, Paul T. Spellman, Lincoln Stein, Maxime Tarabichi, Peter Van Loo, Ignacio Vázquez-García, Shankar Vembu, Wenyi Wang, David C. Wedge, David A. Wheeler, Jeff Wintersinger, Tsun-Po Yang, Xiaotong Yao, Fouad Yousif, Kaixian Yu, Ke Yuan, Hongtu Zhu
last_name: Corcoran
first_name: Niall M.
name: Niall M. Corcoran
affiliations: label: 1
institution: Department of Surgery, Division of Urology, Royal Melbourne Hospital and University of Melbourne
country: Australia
name: Department of Surgery, Division of Urology, Royal Melbourne Hospital and University of Melbourne , Parkville 3050, Victoria, Australia
label: 2
institution: The Epworth Prostate Centre, Epworth Hospital
country: Australia
name: The Epworth Prostate Centre, Epworth Hospital , Richmond 3121, Victoria, Australia
orcid: http://orcid.org/0000-0002-1102-8506
last_name: Papenfuss
first_name: Tony
name: Tony Papenfuss
affiliations: label: 4
institution: Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research
country: Australia
name: Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research , Parkville, Victoria, Australia
last_name: Hovens
first_name: Christopher M.
name: Christopher M. Hovens
affiliations: label: 1
institution: Department of Surgery, Division of Urology, Royal Melbourne Hospital and University of Melbourne
country: Australia
name: Department of Surgery, Division of Urology, Royal Melbourne Hospital and University of Melbourne , Parkville 3050, Victoria, Australia
label: 2
institution: The Epworth Prostate Centre, Epworth Hospital
country: Australia
name: The Epworth Prostate Centre, Epworth Hospital , Richmond 3121, Victoria, Australia
last_name: Markowetz
first_name: Florian
name: Florian Markowetz
affiliations: label: 5
institution: Cancer Research UK Cambridge Institute, University of Cambridge
country: UK
name: Cancer Research UK Cambridge Institute, University of Cambridge , Cambridge CB2 0RE, UK
last_name: Macintyre
first_name: Geoff
name: Geoff Macintyre
corresponding: yes
affiliations: label: 3
institution: Department of Computing and Information Systems, University of Melbourne
country: Australia
name: Department of Computing and Information Systems, University of Melbourne , Parkville 3010, Victoria, Australia
label: 5
institution: Cancer Research UK Cambridge Institute, University of Cambridge
country: UK
name: Cancer Research UK Cambridge Institute, University of Cambridge , Cambridge CB2 0RE, UK
Affiliations: label: 1
institution: Department of Surgery, Division of Urology, Royal Melbourne Hospital and University of Melbourne
country: Australia
name: Department of Surgery, Division of Urology, Royal Melbourne Hospital and University of Melbourne , Parkville 3050, Victoria, Australia
label: 2
institution: The Epworth Prostate Centre, Epworth Hospital
country: Australia
name: The Epworth Prostate Centre, Epworth Hospital , Richmond 3121, Victoria, Australia
label: 3
institution: Department of Computing and Information Systems, University of Melbourne
country: Australia
name: Department of Computing and Information Systems, University of Melbourne , Parkville 3010, Victoria, Australia
label: 4
institution: Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research
country: Australia
name: Bioinformatics Division, The Walter and Eliza Hall Institute of Medical Research , Parkville, Victoria, Australia
label: 5
institution: Cancer Research UK Cambridge Institute, University of Cambridge
country: UK
name: Cancer Research UK Cambridge Institute, University of Cambridge , Cambridge CB2 0RE, UK
label: 6
institution: Electrical and Electronic Engineering, University of Melbourne
country: Australia
name: Electrical and Electronic Engineering, University of Melbourne , Parkville, Victoria 3010, Australia
label: 7
institution: Machine Learning Research Group
country: Australia
name: Machine Learning Research Group , Data61, Canberra 2601, Australia
label: 8
institution: Research School of Computer Science, Australian National University
country: Australia
name: Research School of Computer Science, Australian National University , Canberra 2601, Australia
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017