dataesr/affiliations-benchmark huggingface dataset:
Title: Fine-scale resolution and analysis of runs of homozygosity in domestic dogs
Authors: last_name: Sams
first_name: Aaron J.
name: Aaron J. Sams
affiliations: label: 1
institution: Embark Veterinary, Inc.
country: USA
name: Embark Veterinary, Inc. , Boston, Massachusetts 02110, USA
last_name: Boyko
first_name: Adam R.
name: Adam R. Boyko
affiliations: label: 1
institution: Embark Veterinary, Inc.
country: USA
name: Embark Veterinary, Inc. , Boston, Massachusetts 02110, USA
label: 2
institution: Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University
country: USA
name: Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University , Ithaca, New York 14853, USA
Affiliations: label: 1
institution: Embark Veterinary, Inc.
country: USA
name: Embark Veterinary, Inc. , Boston, Massachusetts 02110, USA
label: 2
institution: Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University
country: USA
name: Department of Biomedical Sciences, College of Veterinary Medicine, Cornell University , Ithaca, New York 14853, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Meta-population structure and the evolutionary transition to multicellularity
Authors: last_name: Rose
first_name: Caroline J.
name: Caroline J. Rose
affiliations: label: 1
institution: New Zealand Institute for Advanced Study, Massey University
country: New Zealand
name: New Zealand Institute for Advanced Study, Massey University , Auckland, New Zealand
label: 2
institution: Centre d’Écologie Fonctionnelle et Évolutive (CEFE), CNRS
country: France
name: Centre d’Écologie Fonctionnelle et Évolutive (CEFE), CNRS , Montpellier, France
notes: These authors contributed equally to this work.
last_name: Hammerschmidt
first_name: Katrin
name: Katrin Hammerschmidt
affiliations: label: 1
institution: New Zealand Institute for Advanced Study, Massey University
country: New Zealand
name: New Zealand Institute for Advanced Study, Massey University , Auckland, New Zealand
label: 3
institution: Institute of General Microbiology, Kiel University
country: Germany
name: Institute of General Microbiology, Kiel University , Kiel, Germany
notes: These authors contributed equally to this work.
last_name: Rainey
first_name: Paul B.
name: Paul B. Rainey
corresponding: yes
affiliations: label: 1
institution: New Zealand Institute for Advanced Study, Massey University
country: New Zealand
name: New Zealand Institute for Advanced Study, Massey University , Auckland, New Zealand
label: 4
institution: Max Planck Institute for Evolutionary Biology, Department of Microbial Population Biology
country: Germany
name: Max Planck Institute for Evolutionary Biology, Department of Microbial Population Biology , Plön 24306, Germany
label: 5
institution: École Supérieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris-Tech), CNRS UMR 8231, PSL Research University
country: France
name: École Supérieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris-Tech), CNRS UMR 8231, PSL Research University , Paris, France
Affiliations: label: 1
institution: New Zealand Institute for Advanced Study, Massey University
country: New Zealand
name: New Zealand Institute for Advanced Study, Massey University , Auckland, New Zealand
label: 2
institution: Centre d’Écologie Fonctionnelle et Évolutive (CEFE), CNRS
country: France
name: Centre d’Écologie Fonctionnelle et Évolutive (CEFE), CNRS , Montpellier, France
label: 3
institution: Institute of General Microbiology, Kiel University
country: Germany
name: Institute of General Microbiology, Kiel University , Kiel, Germany
label: 4
institution: Max Planck Institute for Evolutionary Biology, Department of Microbial Population Biology
country: Germany
name: Max Planck Institute for Evolutionary Biology, Department of Microbial Population Biology , Plön 24306, Germany
label: 5
institution: École Supérieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris-Tech), CNRS UMR 8231, PSL Research University
country: France
name: École Supérieure de Physique et de Chimie Industrielles de la Ville de Paris (ESPCI Paris-Tech), CNRS UMR 8231, PSL Research University , Paris, France
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Improved Accuracy of Diffusion MRI Tractography Using Topology-Informed Pruning (TIP)
Authors: last_name: Yeh
first_name: Fang-Cheng
name: Fang-Cheng Yeh
corresponding: yes
affiliations: label: 1
institution: Department of Neurological Surgery, University of Pittsburgh Medical Center
country: USA
name: Department of Neurological Surgery, University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA
label: 2
institution: Department of Bioengineering, University of Pittsburgh Medical Center
country: USA
name: Department of Bioengineering, University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA
last_name: Panesar
first_name: Sandip
name: Sandip Panesar
affiliations: label: 1
institution: Department of Neurological Surgery, University of Pittsburgh Medical Center
country: USA
name: Department of Neurological Surgery, University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA
last_name: Barrios
first_name: Jessica
name: Jessica Barrios
affiliations: label: 1
institution: Department of Neurological Surgery, University of Pittsburgh Medical Center
country: USA
name: Department of Neurological Surgery, University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA
last_name: Fernandes
first_name: David
name: David Fernandes
affiliations: label: 1
institution: Department of Neurological Surgery, University of Pittsburgh Medical Center
country: USA
name: Department of Neurological Surgery, University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA
last_name: Abhinav
first_name: Kumar
name: Kumar Abhinav
affiliations: label: 3
institution: Department of Neurosurgery, Stanford University School of Medicine
country: USA
name: Department of Neurosurgery, Stanford University School of Medicine , San Jose, California, USA
last_name: Meola
first_name: Antonio
name: Antonio Meola
affiliations: label: 3
institution: Department of Neurosurgery, Stanford University School of Medicine
country: USA
name: Department of Neurosurgery, Stanford University School of Medicine , San Jose, California, USA
last_name: Fernandez-Miranda
first_name: Juan C.
name: Juan C. Fernandez-Miranda
affiliations: label: 3
institution: Department of Neurosurgery, Stanford University School of Medicine
country: USA
name: Department of Neurosurgery, Stanford University School of Medicine , San Jose, California, USA
Affiliations: label: 1
institution: Department of Neurological Surgery, University of Pittsburgh Medical Center
country: USA
name: Department of Neurological Surgery, University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA
label: 2
institution: Department of Bioengineering, University of Pittsburgh Medical Center
country: USA
name: Department of Bioengineering, University of Pittsburgh Medical Center , Pittsburgh, Pennsylvania, USA
label: 3
institution: Department of Neurosurgery, Stanford University School of Medicine
country: USA
name: Department of Neurosurgery, Stanford University School of Medicine , San Jose, California, USA
Field: Medicine
Document type: preprint
Year: 2018
Title: A Novel Algorithm for the Maximal Fit Problem in Boolean Networks
Authors: last_name: Karlebach
first_name: Guy
name: Guy Karlebach
corresponding: yes
affiliations: label: 1
institution: MIT-Broad Foundry, Broa d Institute of MIT and Harvard
country: USA
name: MIT-Broad Foundry, Broa d Institute of MIT and Harvard , Cambridge, Massachusetts, USA
Affiliations: label: 1
institution: MIT-Broad Foundry, Broa d Institute of MIT and Harvard
country: USA
name: MIT-Broad Foundry, Broa d Institute of MIT and Harvard , Cambridge, Massachusetts, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: Comparative analysis of PknB inhibitors for reactivity and toxicity
Authors: orcid: http://orcid.org/0000-0001-8549-4369
last_name: Wlodarchak
first_name: Nathan
name: Nathan Wlodarchak
affiliations: label: 1
institution: Department of Medicine, University of Wisconsin-Madison
name: Department of Medicine, University of Wisconsin-Madison , 3341 Microbial Sciences Building, 1550 Linden Dr., Madison, WI 53706
last_name: Beczkiewicz
first_name: Jeff
name: Jeff Beczkiewicz
affiliations: label: 1
institution: Department of Medicine, University of Wisconsin-Madison
name: Department of Medicine, University of Wisconsin-Madison , 3341 Microbial Sciences Building, 1550 Linden Dr., Madison, WI 53706
last_name: Seitz
first_name: Steven
name: Steven Seitz
affiliations: label: 1
institution: Department of Medicine, University of Wisconsin-Madison
name: Department of Medicine, University of Wisconsin-Madison , 3341 Microbial Sciences Building, 1550 Linden Dr., Madison, WI 53706
orcid: http://orcid.org/0000-0002-7242-1504
last_name: Ye
first_name: Zhengqing
name: Zhengqing Ye
affiliations: label: 2
institution: School of Pharmacy, Medicinal Chemistry Center, University of Wisconsin
name: School of Pharmacy, Medicinal Chemistry Center, University of Wisconsin , Madison, Wisconsin 53705
last_name: Feltenberger
first_name: John
name: John Feltenberger
affiliations: label: 2
institution: School of Pharmacy, Medicinal Chemistry Center, University of Wisconsin
name: School of Pharmacy, Medicinal Chemistry Center, University of Wisconsin , Madison, Wisconsin 53705
last_name: Davis
first_name: J Muse
name: J Muse Davis
affiliations: label: 1
institution: Department of Medicine, University of Wisconsin-Madison
name: Department of Medicine, University of Wisconsin-Madison , 3341 Microbial Sciences Building, 1550 Linden Dr., Madison, WI 53706
orcid: http://orcid.org/0000-0002-0454-895X
last_name: Striker
first_name: Rob
name: Rob Striker
corresponding: yes
affiliations: label: 1
institution: Department of Medicine, University of Wisconsin-Madison
name: Department of Medicine, University of Wisconsin-Madison , 3341 Microbial Sciences Building, 1550 Linden Dr., Madison, WI 53706
label: 3
institution: William S. Middleton Memorial Veterans Hospital
name: William S. Middleton Memorial Veterans Hospital , 2500 Overlook Terr., Madison, WI 53705
Affiliations: label: 1
institution: Department of Medicine, University of Wisconsin-Madison
name: Department of Medicine, University of Wisconsin-Madison , 3341 Microbial Sciences Building, 1550 Linden Dr., Madison, WI 53706
label: 2
institution: School of Pharmacy, Medicinal Chemistry Center, University of Wisconsin
name: School of Pharmacy, Medicinal Chemistry Center, University of Wisconsin , Madison, Wisconsin 53705
label: 3
institution: William S. Middleton Memorial Veterans Hospital
name: William S. Middleton Memorial Veterans Hospital , 2500 Overlook Terr., Madison, WI 53705
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Easily phylotyping E. coli via the EzClermont web app and command-line tool
Authors: last_name: Waters
first_name: Nicholas R.
name: Nicholas R. Waters
affiliations: label: 1
institution: Department of Microbiology, School of Natural Sciences, National University of Ireland
country: Ireland
name: Department of Microbiology, School of Natural Sciences, National University of Ireland , Galway, Ireland
label: 2
institution: Information and Computational Sciences, James Hutton Institute
country: Scotland
name: Information and Computational Sciences, James Hutton Institute , Invergowrie, Dundee DD2 5DA, Scotland
orcid: http://orcid.org/0000-0001-7522-9158
last_name: Abram
first_name: Florence
name: Florence Abram
affiliations: label: 1
institution: Department of Microbiology, School of Natural Sciences, National University of Ireland
country: Ireland
name: Department of Microbiology, School of Natural Sciences, National University of Ireland , Galway, Ireland
orcid: http://orcid.org/0000-0002-2949-6180
last_name: Brennan
first_name: Fiona
name: Fiona Brennan
affiliations: label: 1
institution: Department of Microbiology, School of Natural Sciences, National University of Ireland
country: Ireland
name: Department of Microbiology, School of Natural Sciences, National University of Ireland , Galway, Ireland
label: 3
institution: Soil and Environmental Microbiology, Environmental Research Centre
country: Ireland
name: Soil and Environmental Microbiology, Environmental Research Centre , Teagasc, Johnstown Castle, Wexford, Ireland
last_name: Holmes
first_name: Ashleigh
name: Ashleigh Holmes
affiliations: label: 4
institution: Cell and Molecular Sciences, James Hutton Institute
country: Scotland
name: Cell and Molecular Sciences, James Hutton Institute , Invergowrie, Dundee DD2 5DA, Scotland
orcid: http://orcid.org/0000-0002-8392-2822
last_name: Pritchard
first_name: Leighton
name: Leighton Pritchard
corresponding: yes
affiliations: label: 2
institution: Information and Computational Sciences, James Hutton Institute
country: Scotland
name: Information and Computational Sciences, James Hutton Institute , Invergowrie, Dundee DD2 5DA, Scotland
Affiliations: label: 1
institution: Department of Microbiology, School of Natural Sciences, National University of Ireland
country: Ireland
name: Department of Microbiology, School of Natural Sciences, National University of Ireland , Galway, Ireland
label: 2
institution: Information and Computational Sciences, James Hutton Institute
country: Scotland
name: Information and Computational Sciences, James Hutton Institute , Invergowrie, Dundee DD2 5DA, Scotland
label: 3
institution: Soil and Environmental Microbiology, Environmental Research Centre
country: Ireland
name: Soil and Environmental Microbiology, Environmental Research Centre , Teagasc, Johnstown Castle, Wexford, Ireland
label: 4
institution: Cell and Molecular Sciences, James Hutton Institute
country: Scotland
name: Cell and Molecular Sciences, James Hutton Institute , Invergowrie, Dundee DD2 5DA, Scotland
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Neural circuit robustness to acute, global physiological perturbations
Authors: orcid: http://orcid.org/0000-0003-1896-680X
last_name: Ratliff
first_name: Jacob
name: Jacob Ratliff
affiliations: label: 1
institution: Biology Department and Volen Center, Brandeis University
country: USA
name: Biology Department and Volen Center, Brandeis University , Waltham, MA 02454, USA
label: 2
institution: Dominick P Purpura Department of Neuroscience, Albert Einstein College of Medicine, Rose F. Kennedy Center
country: USA
name: Dominick P Purpura Department of Neuroscience, Albert Einstein College of Medicine, Rose F. Kennedy Center , 1410 Pelham Parkway South Room 203, Bronx, NY 10461, USA
orcid: http://orcid.org/0000-0001-9632-5448
last_name: Marder
first_name: Eve
name: Eve Marder
affiliations: label: 1
institution: Biology Department and Volen Center, Brandeis University
country: USA
name: Biology Department and Volen Center, Brandeis University , Waltham, MA 02454, USA
orcid: http://orcid.org/0000-0002-1029-0158
last_name: O’Leary
first_name: Timothy
name: Timothy O’Leary
affiliations: label: 3
institution: Department of Engineering, University of Cambridge
country: UK
name: Department of Engineering, University of Cambridge , UK
Affiliations: label: 1
institution: Biology Department and Volen Center, Brandeis University
country: USA
name: Biology Department and Volen Center, Brandeis University , Waltham, MA 02454, USA
label: 2
institution: Dominick P Purpura Department of Neuroscience, Albert Einstein College of Medicine, Rose F. Kennedy Center
country: USA
name: Dominick P Purpura Department of Neuroscience, Albert Einstein College of Medicine, Rose F. Kennedy Center , 1410 Pelham Parkway South Room 203, Bronx, NY 10461, USA
label: 3
institution: Department of Engineering, University of Cambridge
country: UK
name: Department of Engineering, University of Cambridge , UK
Field: Neuroscience
Document type: preprint
Year: 2018
Title: UMI-tools: Modelling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
Authors: last_name: Smith
first_name: Tom
name: Tom Smith
affiliations: label: 1
institution: Computational Genomics Analysis and Training Programme, MRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford
name: Computational Genomics Analysis and Training Programme, MRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford , South Parks Road, Oxford OX1 3PT
last_name: Heger
first_name: Andreas
name: Andreas Heger
affiliations: label: 1
institution: Computational Genomics Analysis and Training Programme, MRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford
name: Computational Genomics Analysis and Training Programme, MRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford , South Parks Road, Oxford OX1 3PT
last_name: Sudbery
first_name: Ian
name: Ian Sudbery
corresponding: yes
affiliations: label: 2
institution: Department of Molecular Biology and Biotechnology, University of Sheffield
country: UK
name: Department of Molecular Biology and Biotechnology, University of Sheffield , Firth Court, Western Bank, Sheffield, UK , S10 2TN
Affiliations: label: 1
institution: Computational Genomics Analysis and Training Programme, MRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford
name: Computational Genomics Analysis and Training Programme, MRC Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford , South Parks Road, Oxford OX1 3PT
label: 2
institution: Department of Molecular Biology and Biotechnology, University of Sheffield
country: UK
name: Department of Molecular Biology and Biotechnology, University of Sheffield , Firth Court, Western Bank, Sheffield, UK , S10 2TN
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: c-Myc Represses Transcription of the Epstein-Barr Virus Latent Membrane Protein 1 Early After Primary B Cell Infection
Authors: last_name: Price
first_name: Alexander M.
name: Alexander M. Price
notes: Present address: Pathology and Laboratory Medicine, The Children’s Hospital of Philadelphia
These authors contributed equally to this work
last_name: Messinger
first_name: Joshua E.
name: Joshua E. Messinger
notes: These authors contributed equally to this work
orcid: http://orcid.org/0000-0002-2964-1907
last_name: Luftig
first_name: Micah A.
name: Micah A. Luftig
corresponding: yes
Affiliations: institution: Department of Molecular Genetics and Microbiology, Duke Center for Virology, Duke University School of Medicine
name: Department of Molecular Genetics and Microbiology, Duke Center for Virology, Duke University School of Medicine
Field: Medicine
Document type: preprint
Year: 2017
Title: Bayesian inference of metabolic kinetics from genome-scale multiomics data
Authors: orcid: http://orcid.org/0000-0002-7928-3722
last_name: St. John
first_name: Peter C.
name: Peter C. St. John
affiliations: label: 1
institution: Biosciences Center
country: USA
name: Biosciences Center , National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden CO 80401, USA
last_name: Strutz
first_name: Jonathan
name: Jonathan Strutz
affiliations: label: 2
institution: Department of Chemical and Biological Engineering
country: USA
name: Department of Chemical and Biological Engineering , Northwestern University, 2145 Sheridan Road, Evanston IL 60208, USA
orcid: http://orcid.org/0000-0003-4253-592X
last_name: Broadbelt
first_name: Linda J.
name: Linda J. Broadbelt
affiliations: label: 2
institution: Department of Chemical and Biological Engineering
country: USA
name: Department of Chemical and Biological Engineering , Northwestern University, 2145 Sheridan Road, Evanston IL 60208, USA
orcid: http://orcid.org/0000-0002-2342-0687
last_name: Tyo
first_name: Keith E.J.
name: Keith E.J. Tyo
affiliations: label: 2
institution: Department of Chemical and Biological Engineering
country: USA
name: Department of Chemical and Biological Engineering , Northwestern University, 2145 Sheridan Road, Evanston IL 60208, USA
orcid: http://orcid.org/0000-0001-7624-8000
last_name: Bomble
first_name: Yannick J.
name: Yannick J. Bomble
corresponding: yes
affiliations: label: 1
institution: Biosciences Center
country: USA
name: Biosciences Center , National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden CO 80401, USA
Affiliations: label: 1
institution: Biosciences Center
country: USA
name: Biosciences Center , National Renewable Energy Laboratory, 15013 Denver West Parkway, Golden CO 80401, USA
label: 2
institution: Department of Chemical and Biological Engineering
country: USA
name: Department of Chemical and Biological Engineering , Northwestern University, 2145 Sheridan Road, Evanston IL 60208, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: An inexpensive air stream temperature controller and its use to facilitate temperature controlled behavior in living Drosophila
Authors: last_name: Sangston
first_name: Ryan
name: Ryan Sangston
corresponding: yes
affiliations: label: 1
institution: Biology Department, University of Virginia
country: USA
name: Biology Department, University of Virginia , Virginia, USA
last_name: Hirsh
first_name: Jay
name: Jay Hirsh
affiliations: label: 1
institution: Biology Department, University of Virginia
country: USA
name: Biology Department, University of Virginia , Virginia, USA
Affiliations: label: 1
institution: Biology Department, University of Virginia
country: USA
name: Biology Department, University of Virginia , Virginia, USA
Field: Neuroscience
Document type: preprint
Year: 2018
Title: Application of database-independent approach to assess the quality of OTU picking methods
Authors: orcid: http://orcid.org/0000-0002-6935-4275
last_name: Schloss
first_name: Patrick D.
name: Patrick D. Schloss
corresponding: yes
Affiliations: institution: Department of Microbiology and Immunology, University of Michigan
name: Department of Microbiology and Immunology, University of Michigan , Ann Arbor, MI
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016