dataesr/affiliations-benchmark huggingface dataset:
Title: A variant by any name: quantifying annotation discordance across tools and clinical databases
Authors: last_name: Yen
first_name: Jennifer
name: Jennifer Yen
affiliations: label: 1
institution: Personalis
name: Personalis , 1330 O’Brien Drive, Menlo Park, CA 94025
last_name: Garcia
first_name: Sarah
name: Sarah Garcia
affiliations: label: 1
institution: Personalis
name: Personalis , 1330 O’Brien Drive, Menlo Park, CA 94025
label: 2
institution: 10X Genomics
name: 10X Genomics , 7068 Koll Center Pkwy #401, Pleasanton, CA 94566
last_name: Montana
first_name: Aldrin
name: Aldrin Montana
affiliations: label: 1
institution: Personalis
name: Personalis , 1330 O’Brien Drive, Menlo Park, CA 94025
last_name: Harris
first_name: Jason
name: Jason Harris
affiliations: label: 1
institution: Personalis
name: Personalis , 1330 O’Brien Drive, Menlo Park, CA 94025
last_name: Chervitz
first_name: Steven
name: Steven Chervitz
affiliations: label: 1
institution: Personalis
name: Personalis , 1330 O’Brien Drive, Menlo Park, CA 94025
last_name: West
first_name: John
name: John West
affiliations: label: 1
institution: Personalis
name: Personalis , 1330 O’Brien Drive, Menlo Park, CA 94025
last_name: Chen
first_name: Richard
name: Richard Chen
affiliations: label: 1
institution: Personalis
name: Personalis , 1330 O’Brien Drive, Menlo Park, CA 94025
last_name: Church
first_name: Deanna M.
name: Deanna M. Church
affiliations: label: 1
institution: Personalis
name: Personalis , 1330 O’Brien Drive, Menlo Park, CA 94025
label: 2
institution: 10X Genomics
name: 10X Genomics , 7068 Koll Center Pkwy #401, Pleasanton, CA 94566
Affiliations: label: 1
institution: Personalis
name: Personalis , 1330 O’Brien Drive, Menlo Park, CA 94025
label: 2
institution: 10X Genomics
name: 10X Genomics , 7068 Koll Center Pkwy #401, Pleasanton, CA 94566
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: Genotyping of Salmonella spp. on the basis of CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)
Authors: last_name: Jiksing
first_name: Calvin
name: Calvin Jiksing
affiliations: label: 1
institution: Biotechnology Research Institute, Universiti Malaysia Sabah
country: Malaysia
name: Biotechnology Research Institute, Universiti Malaysia Sabah , 88400, Kota Kinabalu, Sabah, Malaysia
last_name: Yusop
first_name: Normah
name: Normah Yusop
affiliations: label: 2
institution: Diagnostic Veterinary Laboratory
country: Malaysia
name: Diagnostic Veterinary Laboratory , 88999, Kota Kinabalu, Sabah, Malaysia
last_name: Nasib
first_name: Farhan Nazaie
name: Farhan Nazaie Nasib
affiliations: label: 1
institution: Biotechnology Research Institute, Universiti Malaysia Sabah
country: Malaysia
name: Biotechnology Research Institute, Universiti Malaysia Sabah , 88400, Kota Kinabalu, Sabah, Malaysia
last_name: Rodrigues
first_name: Kenneth Francis
name: Kenneth Francis Rodrigues
corresponding: yes
affiliations: label: 1
institution: Biotechnology Research Institute, Universiti Malaysia Sabah
country: Malaysia
name: Biotechnology Research Institute, Universiti Malaysia Sabah , 88400, Kota Kinabalu, Sabah, Malaysia
Affiliations: label: 1
institution: Biotechnology Research Institute, Universiti Malaysia Sabah
country: Malaysia
name: Biotechnology Research Institute, Universiti Malaysia Sabah , 88400, Kota Kinabalu, Sabah, Malaysia
label: 2
institution: Diagnostic Veterinary Laboratory
country: Malaysia
name: Diagnostic Veterinary Laboratory , 88999, Kota Kinabalu, Sabah, Malaysia
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: RUPEE: A fast and accurate purely geometric protein structure search
Authors: orcid: http://orcid.org/0000-0003-2453-9214
last_name: Ayoub
first_name: Ronald
name: Ronald Ayoub
affiliations: label: 1
institution: School of Computing and Engineering, University of Missouri at Kansas City
country: USA
name: School of Computing and Engineering, University of Missouri at Kansas City , USA
notes: ronaldayoub@mail.umkc.edu
last_name: Lee
first_name: Yugyung
name: Yugyung Lee
affiliations: label: 1
institution: School of Computing and Engineering, University of Missouri at Kansas City
country: USA
name: School of Computing and Engineering, University of Missouri at Kansas City , USA
Affiliations: label: 1
institution: School of Computing and Engineering, University of Missouri at Kansas City
country: USA
name: School of Computing and Engineering, University of Missouri at Kansas City , USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Beyond thermodynamic constraints: Evolutionary history shapes protein sequence variation
Authors: orcid: http://orcid.org/0000-0002-2877-1179
last_name: Jiang
first_name: Qian
name: Qian Jiang
affiliations: label: *
institution: Department of Integrative Biology, The University of Texas at Austin
country: USA
name: * Department of Integrative Biology, The University of Texas at Austin , Austin, TX, USA , 78712
label: †
institution: State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University
country: China
name: † State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University , Nanjing, China , 210095
orcid: http://orcid.org/0000-0002-1076-0439
last_name: Teufel
first_name: Ashley I.
name: Ashley I. Teufel
affiliations: label: *
institution: Department of Integrative Biology, The University of Texas at Austin
country: USA
name: * Department of Integrative Biology, The University of Texas at Austin , Austin, TX, USA , 78712
last_name: Jackson
first_name: Eleisha L.
name: Eleisha L. Jackson
affiliations: label: *
institution: Department of Integrative Biology, The University of Texas at Austin
country: USA
name: * Department of Integrative Biology, The University of Texas at Austin , Austin, TX, USA , 78712
orcid: http://orcid.org/0000-0002-7470-9261
last_name: Wilke
first_name: Claus O.
name: Claus O. Wilke
affiliations: label: *
institution: Department of Integrative Biology, The University of Texas at Austin
country: USA
name: * Department of Integrative Biology, The University of Texas at Austin , Austin, TX, USA , 78712
notes: Department of Integrative Biology, The University of Texas at Austin, Austin, TX, USA, 78712. Email: wilke@austin.utexas.edu
Affiliations: label: *
institution: Department of Integrative Biology, The University of Texas at Austin
country: USA
name: * Department of Integrative Biology, The University of Texas at Austin , Austin, TX, USA , 78712
label: †
institution: State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University
country: China
name: † State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Horticulture, Nanjing Agricultural University , Nanjing, China , 210095
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Basset: Learning the regulatory code of the accessible genome with deep convolutional neural networks
Authors: last_name: Kelley
first_name: David R.
name: David R. Kelley
corresponding: yes
affiliations: label: 1
institution: Department of Stem Cell and Regenerative Biology, Harvard University
country: USA
name: Department of Stem Cell and Regenerative Biology, Harvard University , Cambridge, MA 02138, USA
notes: Contact information: David R. Kelley dkelley@fas.harvard.edu 732-849-4305 7 Divinity Ave. Cambridge, MA 02138 Jasper Snoek jsnoek@seas.harvard.edu School Of Engineering and Applied Science Harvard University Cambridge, MA 02138 John L. Rinn john_rinn@harvard.edu 7 Divinity Ave. Cambridge, MA 02138
last_name: Snoek
first_name: Jasper
name: Jasper Snoek
corresponding: yes
affiliations: label: 2
institution: School of Engineering and Applied Science, Harvard University
country: MA
name: School of Engineering and Applied Science, Harvard University , Cambridge, MA 02138, MA
notes: Contact information: David R. Kelley dkelley@fas.harvard.edu 732-849-4305 7 Divinity Ave. Cambridge, MA 02138 Jasper Snoek jsnoek@seas.harvard.edu School Of Engineering and Applied Science Harvard University Cambridge, MA 02138 John L. Rinn john_rinn@harvard.edu 7 Divinity Ave. Cambridge, MA 02138
last_name: Rinn
first_name: John L.
name: John L. Rinn
corresponding: yes
affiliations: label: 1
institution: Department of Stem Cell and Regenerative Biology, Harvard University
country: USA
name: Department of Stem Cell and Regenerative Biology, Harvard University , Cambridge, MA 02138, USA
notes: Contact information: David R. Kelley dkelley@fas.harvard.edu 732-849-4305 7 Divinity Ave. Cambridge, MA 02138 Jasper Snoek jsnoek@seas.harvard.edu School Of Engineering and Applied Science Harvard University Cambridge, MA 02138 John L. Rinn john_rinn@harvard.edu 7 Divinity Ave. Cambridge, MA 02138
Affiliations: label: 1
institution: Department of Stem Cell and Regenerative Biology, Harvard University
country: USA
name: Department of Stem Cell and Regenerative Biology, Harvard University , Cambridge, MA 02138, USA
label: 2
institution: School of Engineering and Applied Science, Harvard University
country: MA
name: School of Engineering and Applied Science, Harvard University , Cambridge, MA 02138, MA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2015
Title: ascend : R package for analysis of single cell RNA-seq data
Authors: last_name: Senabouth
first_name: Anne
name: Anne Senabouth
affiliations: label: 1
institution: Institute for Molecular Bioscience, University of Queensland
country: Australia
name: Institute for Molecular Bioscience, University of Queensland , Brisbane, Australia
last_name: Lukowski
first_name: Samuel W
name: Samuel W Lukowski
affiliations: label: 1
institution: Institute for Molecular Bioscience, University of Queensland
country: Australia
name: Institute for Molecular Bioscience, University of Queensland , Brisbane, Australia
last_name: Alquicira Hernandez
first_name: Jose
name: Jose Alquicira Hernandez
affiliations: label: 1
institution: Institute for Molecular Bioscience, University of Queensland
country: Australia
name: Institute for Molecular Bioscience, University of Queensland , Brisbane, Australia
last_name: Andersen
first_name: Stacey
name: Stacey Andersen
affiliations: label: 1
institution: Institute for Molecular Bioscience, University of Queensland
country: Australia
name: Institute for Molecular Bioscience, University of Queensland , Brisbane, Australia
last_name: Mei
first_name: Xin
name: Xin Mei
affiliations: label: 2
institution: South China Botanical Garden, Chinese Academy of Sciences
country: China
name: South China Botanical Garden, Chinese Academy of Sciences , Guangzhou, China
last_name: Nguyen
first_name: Quan H
name: Quan H Nguyen
affiliations: label: 1
institution: Institute for Molecular Bioscience, University of Queensland
country: Australia
name: Institute for Molecular Bioscience, University of Queensland , Brisbane, Australia
notes: Joint senior author
last_name: Powell
first_name: Joseph E
name: Joseph E Powell
corresponding: yes
affiliations: label: 1
institution: Institute for Molecular Bioscience, University of Queensland
country: Australia
name: Institute for Molecular Bioscience, University of Queensland , Brisbane, Australia
label: 3
institution: Queensland Brain Institute, University of Queensland
country: Australia
name: Queensland Brain Institute, University of Queensland , Brisbane, Australia
notes: Joint senior author
Affiliations: label: 1
institution: Institute for Molecular Bioscience, University of Queensland
country: Australia
name: Institute for Molecular Bioscience, University of Queensland , Brisbane, Australia
label: 2
institution: South China Botanical Garden, Chinese Academy of Sciences
country: China
name: South China Botanical Garden, Chinese Academy of Sciences , Guangzhou, China
label: 3
institution: Queensland Brain Institute, University of Queensland
country: Australia
name: Queensland Brain Institute, University of Queensland , Brisbane, Australia
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Deficient skeletal muscle regeneration after injury induced by a Clostridium perfringens strain associated with gas gangrene
Authors: last_name: Zúñiga-Pereira
first_name: Ana Mariel
name: Ana Mariel Zúñiga-Pereira
affiliations: label: 1
institution: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica
country: Costa Rica
name: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica , San José, Costa Rica
last_name: Carlos Santamaría
first_name: Carlos
name: Carlos Carlos Santamaría
affiliations: label: 2
institution: Laboratorio de Biología Molecular, Hospital Nacional de Niños
country: Costa Rica
name: Laboratorio de Biología Molecular, Hospital Nacional de Niños , San José, Costa Rica
last_name: Gutiérrez
first_name: José María
name: José María Gutiérrez
affiliations: label: 1
institution: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica
country: Costa Rica
name: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica , San José, Costa Rica
orcid: http://orcid.org/0000-0003-3934-8496
last_name: Alape-Girón
first_name: Alberto
name: Alberto Alape-Girón
affiliations: label: 1
institution: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica
country: Costa Rica
name: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica , San José, Costa Rica
label: 3
institution: Departamento de Bioquímica, Escuela de Medicina, Universidad de Costa Rica
country: Costa Rica
name: Departamento de Bioquímica, Escuela de Medicina, Universidad de Costa Rica , San José, Costa Rica
notes: alberto.alape@ucr.ac.cr
last_name: Flores-Díaz
first_name: Marietta
name: Marietta Flores-Díaz
affiliations: label: 1
institution: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica
country: Costa Rica
name: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica , San José, Costa Rica
Affiliations: label: 1
institution: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica
country: Costa Rica
name: Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica , San José, Costa Rica
label: 2
institution: Laboratorio de Biología Molecular, Hospital Nacional de Niños
country: Costa Rica
name: Laboratorio de Biología Molecular, Hospital Nacional de Niños , San José, Costa Rica
label: 3
institution: Departamento de Bioquímica, Escuela de Medicina, Universidad de Costa Rica
country: Costa Rica
name: Departamento de Bioquímica, Escuela de Medicina, Universidad de Costa Rica , San José, Costa Rica
Field: Medicine
Document type: preprint
Year: 2018
Title: Burst activation of dopamine neurons produces prolonged post-burst availability of actively released dopamine
Authors: last_name: Lohani
first_name: Sweyta
name: Sweyta Lohani
affiliations: label: 1
institution: Department of Neuroscience
name: Department of Neuroscience
notes: Co-first authors
last_name: Martig
first_name: Adria K.
name: Adria K. Martig
affiliations: label: 1
institution: Department of Neuroscience
name: Department of Neuroscience
label: 3
institution: The Michael J. Fox Foundation
name: The Michael J. Fox Foundation , New York, NY;
notes: Co-first authors
last_name: Underhill
first_name: Suzanne M.
name: Suzanne M. Underhill
affiliations: label: 2
institution: Department of Neurobiology, University of Pittsburgh
country: United States
name: Department of Neurobiology, University of Pittsburgh , Pittsburgh, PA, 15260, United States
label: 4
institution: National Institute of Mental Health
name: National Institute of Mental Health , Bethesda, MD;
last_name: DeFrancesco
first_name: Alicia
name: Alicia DeFrancesco
affiliations: label: 1
institution: Department of Neuroscience
name: Department of Neuroscience
label: 5
institution: Case Western Reserve University
name: Case Western Reserve University , Cleveland, OH;
last_name: Roberts
first_name: Melanie J.
name: Melanie J. Roberts
affiliations: label: 1
institution: Department of Neuroscience
name: Department of Neuroscience
last_name: Rinaman
first_name: Linda
name: Linda Rinaman
affiliations: label: 1
institution: Department of Neuroscience
name: Department of Neuroscience
last_name: Amara
first_name: Susan
name: Susan Amara
affiliations: label: 2
institution: Department of Neurobiology, University of Pittsburgh
country: United States
name: Department of Neurobiology, University of Pittsburgh , Pittsburgh, PA, 15260, United States
label: 4
institution: National Institute of Mental Health
name: National Institute of Mental Health , Bethesda, MD;
last_name: Moghaddam
first_name: Bita
name: Bita Moghaddam
corresponding: yes
affiliations: label: 1
institution: Department of Neuroscience
name: Department of Neuroscience
label: 6
institution: Behavioral Neuroscience Department, Oregon Health and Science University
name: Behavioral Neuroscience Department, Oregon Health and Science University , Portland, OR
Affiliations: label: 1
institution: Department of Neuroscience
name: Department of Neuroscience
label: 2
institution: Department of Neurobiology, University of Pittsburgh
country: United States
name: Department of Neurobiology, University of Pittsburgh , Pittsburgh, PA, 15260, United States
label: 3
institution: The Michael J. Fox Foundation
name: The Michael J. Fox Foundation , New York, NY;
label: 4
institution: National Institute of Mental Health
name: National Institute of Mental Health , Bethesda, MD;
label: 5
institution: Case Western Reserve University
name: Case Western Reserve University , Cleveland, OH;
label: 6
institution: Behavioral Neuroscience Department, Oregon Health and Science University
name: Behavioral Neuroscience Department, Oregon Health and Science University , Portland, OR
Field: Neuroscience
Document type: preprint
Year: 2017
Title: Software Application Profile: mrrobust - a tool for performing two-sample summary Mendelian randomization analyses
Authors: last_name: Spiller
first_name: Wesley
name: Wesley Spiller
affiliations: label: 1
institution: School of Social and Community Medicine, University of Bristol
country: U.K
name: School of Social and Community Medicine, University of Bristol , Barley House, Oakfield Grove, Bristol, BS8 2BN, U.K
last_name: Davies
first_name: Neil M.
name: Neil M. Davies
affiliations: label: 1
institution: School of Social and Community Medicine, University of Bristol
country: U.K
name: School of Social and Community Medicine, University of Bristol , Barley House, Oakfield Grove, Bristol, BS8 2BN, U.K
last_name: Palmer
first_name: Tom M.
name: Tom M. Palmer
affiliations: label: 2
institution: Department of Mathematics and Statistics, Lancaster University
country: United Kingdom
name: Department of Mathematics and Statistics, Lancaster University , Lancaster, United Kingdom
Affiliations: label: 1
institution: School of Social and Community Medicine, University of Bristol
country: U.K
name: School of Social and Community Medicine, University of Bristol , Barley House, Oakfield Grove, Bristol, BS8 2BN, U.K
label: 2
institution: Department of Mathematics and Statistics, Lancaster University
country: United Kingdom
name: Department of Mathematics and Statistics, Lancaster University , Lancaster, United Kingdom
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: The effect of facial expression on contrast sensitivity: a behavioural investigation and extension of Hedger, Garner, & Adams (2015)
Authors: orcid: http://orcid.org/0000-0001-9522-8355
last_name: Webb
first_name: Abigail L. M.
name: Abigail L. M. Webb
corresponding: yes
affiliations: label: 1
institution: Department of Psychology, University of Essex
country: UK
name: Department of Psychology, University of Essex , Essex, UK
orcid: http://orcid.org/0000-0001-6133-6729
last_name: Hibbard
first_name: Paul B.
name: Paul B. Hibbard
affiliations: label: 1
institution: Department of Psychology, University of Essex
country: UK
name: Department of Psychology, University of Essex , Essex, UK
Affiliations: label: 1
institution: Department of Psychology, University of Essex
country: UK
name: Department of Psychology, University of Essex , Essex, UK
Field: Neuroscience
Document type: preprint
Year: 2018
Title: Preferential sampling for presence/absence data and for fusion of presence/absence data with presence-only data
Authors: last_name: Gelfand
first_name: Alan. E.
name: Alan. E. Gelfand
affiliations: label: *
institution: Department of Statistical Science, Duke University
country: US
name: * Department of Statistical Science, Duke University , US . E-mail: alan@stat.duke.edu
last_name: Shirota
first_name: Shinichiro
name: Shinichiro Shirota
affiliations: label: †
institution: Department of Biostatistics, University of California
country: US
name: † Department of Biostatistics, University of California , Los Angeles, US . E-mail: shinichiro.shirota@gmai.com
Affiliations: label: *
institution: Department of Statistical Science, Duke University
country: US
name: * Department of Statistical Science, Duke University , US . E-mail: alan@stat.duke.edu
label: †
institution: Department of Biostatistics, University of California
country: US
name: † Department of Biostatistics, University of California , Los Angeles, US . E-mail: shinichiro.shirota@gmai.com
Field: Environmental Science
Document type: preprint
Year: 2018
Title: Starting from the end: what to do when restricted data is released
Authors: orcid: http://orcid.org/0000-0001-8520-5598
last_name: Teperek
first_name: Marta
name: Marta Teperek
affiliations: label: 1
institution: Office of Scholarly Communication, Cambridge University Library, University of Cambridge
name: Office of Scholarly Communication, Cambridge University Library, University of Cambridge
last_name: Morgan
first_name: Rhys
name: Rhys Morgan
affiliations: label: 2
institution: Research Strategy Office, The Old Schools, University of Cambridge
name: Research Strategy Office, The Old Schools, University of Cambridge
orcid: http://orcid.org/0000-0003-0407-9767
last_name: Ellefson
first_name: Michelle
name: Michelle Ellefson
affiliations: label: 3
institution: Faculty of Education, University of Cambridge
name: Faculty of Education, University of Cambridge
orcid: http://orcid.org/0000-0002-3636-5939
last_name: Kingsley
first_name: Danny
name: Danny Kingsley
affiliations: label: 1
institution: Office of Scholarly Communication, Cambridge University Library, University of Cambridge
name: Office of Scholarly Communication, Cambridge University Library, University of Cambridge
Affiliations: label: 1
institution: Office of Scholarly Communication, Cambridge University Library, University of Cambridge
name: Office of Scholarly Communication, Cambridge University Library, University of Cambridge
label: 2
institution: Research Strategy Office, The Old Schools, University of Cambridge
name: Research Strategy Office, The Old Schools, University of Cambridge
label: 3
institution: Faculty of Education, University of Cambridge
name: Faculty of Education, University of Cambridge
Field: Computer Science
Document type: preprint
Year: 2016