Title: A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation
Authors: last_name: Järvenpää
first_name: Marko
name: Marko Järvenpää
affiliations: label: 1
institution: Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University
country: Finland
name: Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University , Espoo, Finland
label: 2
institution: Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health
country: USA
name: Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health , Boston, MA, USA
orcid: http://orcid.org/0000-0003-1912-0590
last_name: Abdul Sater
first_name: Mohamad R.
name: Mohamad R. Abdul Sater
affiliations: label: 2
institution: Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health
country: USA
name: Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health , Boston, MA, USA
orcid: http://orcid.org/0000-0002-3165-7801
last_name: Lagoudas
first_name: Georgia K.
name: Georgia K. Lagoudas
affiliations: label: 3
institution: Department of Biological Engineering, MIT
country: USA
name: Department of Biological Engineering, MIT , Cambridge, MA, USA
label: 4
institution: Broad Institute, MIT and Harvard
country: USA
name: Broad Institute, MIT and Harvard , Cambridge, MA, USA
orcid: http://orcid.org/0000-0002-4889-8783
last_name: Blainey
first_name: Paul C.
name: Paul C. Blainey
affiliations: label: 3
institution: Department of Biological Engineering, MIT
country: USA
name: Department of Biological Engineering, MIT , Cambridge, MA, USA
label: 4
institution: Broad Institute, MIT and Harvard
country: USA
name: Broad Institute, MIT and Harvard , Cambridge, MA, USA
last_name: Miller
first_name: Loren G.
name: Loren G. Miller
affiliations: label: 5
institution: Infectious Disease Clinical Outcomes Research Unit (ID-CORE), Division of Infectious Diseases, Los Angeles Biomedical Research Institute
name: Infectious Disease Clinical Outcomes Research Unit (ID-CORE), Division of Infectious Diseases, Los Angeles Biomedical Research Institute , Harbor-UCLA Medical Center, Torrance, CA
last_name: McKinnell
first_name: James A.
name: James A. McKinnell
affiliations: label: 5
institution: Infectious Disease Clinical Outcomes Research Unit (ID-CORE), Division of Infectious Diseases, Los Angeles Biomedical Research Institute
name: Infectious Disease Clinical Outcomes Research Unit (ID-CORE), Division of Infectious Diseases, Los Angeles Biomedical Research Institute , Harbor-UCLA Medical Center, Torrance, CA
label: 6
institution: Los Angeles County Department of Public Health
name: Los Angeles County Department of Public Health , Acute Communicable Disease Control Unit
last_name: Huang
first_name: Susan S.
name: Susan S. Huang
affiliations: label: 7
institution: Division of Infectious Diseases and Health Policy Research Institute, University of California
country: USA
name: Division of Infectious Diseases and Health Policy Research Institute, University of California , Irvine School of Medicine, Irvine, CA, USA
last_name: Grad
first_name: Yonatan H.
name: Yonatan H. Grad
corresponding: yes
affiliations: label: 2
institution: Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health
country: USA
name: Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health , Boston, MA, USA
notes: These authors contributed equally to this work.
ygrad@hsph.harvard.edu, pekka.marttinen@aalto.fi
last_name: Marttinen
first_name: Pekka
name: Pekka Marttinen
corresponding: yes
affiliations: label: 1
institution: Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University
country: Finland
name: Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University , Espoo, Finland
notes: These authors contributed equally to this work.
ygrad@hsph.harvard.edu, pekka.marttinen@aalto.fi
Affiliations: label: 1
institution: Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University
country: Finland
name: Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University , Espoo, Finland
label: 2
institution: Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health
country: USA
name: Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health , Boston, MA, USA
label: 3
institution: Department of Biological Engineering, MIT
country: USA
name: Department of Biological Engineering, MIT , Cambridge, MA, USA
label: 4
institution: Broad Institute, MIT and Harvard
country: USA
name: Broad Institute, MIT and Harvard , Cambridge, MA, USA
label: 5
institution: Infectious Disease Clinical Outcomes Research Unit (ID-CORE), Division of Infectious Diseases, Los Angeles Biomedical Research Institute
name: Infectious Disease Clinical Outcomes Research Unit (ID-CORE), Division of Infectious Diseases, Los Angeles Biomedical Research Institute , Harbor-UCLA Medical Center, Torrance, CA
label: 6
institution: Los Angeles County Department of Public Health
name: Los Angeles County Department of Public Health , Acute Communicable Disease Control Unit
label: 7
institution: Division of Infectious Diseases and Health Policy Research Institute, University of California
country: USA
name: Division of Infectious Diseases and Health Policy Research Institute, University of California , Irvine School of Medicine, Irvine, CA, USA
Field: Medicine
Document type: preprint
Year: 2018