Title: Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control
Authors: orcid: http://orcid.org/0000-0002-8697-699X
last_name: Matthews
first_name: Benjamin J.
name: Benjamin J. Matthews
corresponding: yes
affiliations: label: 1
institution: Laboratory of Neurogenetics and Behavior, The Rockefeller University
country: USA
name: Laboratory of Neurogenetics and Behavior, The Rockefeller University , New York, New York, USA .
label: 2
institution: Howard Hughes Medical Institute, New York
country: USA
name: Howard Hughes Medical Institute, New York , New York, USA .
label: 3
institution: Kavli Neural Systems Institute, New York
country: USA
name: Kavli Neural Systems Institute, New York , New York, USA .
notes: These authors contributed equally to this work.
orcid: http://orcid.org/0000-0001-9163-9544
last_name: Dudchenko
first_name: Olga
name: Olga Dudchenko
affiliations: label: 4
institution: The Center for Genome Architecture, Baylor College of Medicine
country: USA
name: The Center for Genome Architecture, Baylor College of Medicine , Houston, Texas, USA .
label: 5
institution: Department of Molecular and Human Genetics, Baylor College of Medicine
country: USA
name: Department of Molecular and Human Genetics, Baylor College of Medicine , Houston, Texas, USA .
label: 6
institution: Departments of Computer Science and Computational and Applied Mathematics, Rice University
country: USA
name: Departments of Computer Science and Computational and Applied Mathematics, Rice University , Houston, Texas, USA .
label: 7
institution: Center for Theoretical and Biological Physics, Rice University
country: USA
name: Center for Theoretical and Biological Physics, Rice University , Houston, Texas, USA .
notes: These authors contributed equally to this work.
orcid: http://orcid.org/0000-0002-4900-0189
last_name: Kingan
first_name: Sarah
name: Sarah Kingan
affiliations: label: 8
institution: Pacific Biosciences, Menlo Park
country: USA
name: Pacific Biosciences, Menlo Park , California, USA .
notes: These authors contributed equally to this work.
orcid: http://orcid.org/0000-0002-1472-8962
last_name: Koren
first_name: Sergey
name: Sergey Koren
affiliations: label: 9
institution: National Human Genome Research Institute, National Institutes of Health
country: USA
name: National Human Genome Research Institute, National Institutes of Health , Bethesda, Maryland, USA .
orcid: http://orcid.org/0000-0002-9934-3040
last_name: Antoshechkin
first_name: Igor
name: Igor Antoshechkin
affiliations: label: 10
institution: Division of Biology and Biological Engineering, California Institute of Technology
country: USA
name: 10 Division of Biology and Biological Engineering, California Institute of Technology , Pasadena, California, USA .
orcid: http://orcid.org/0000-0002-6745-9145
last_name: Crawford
first_name: Jacob E.
name: Jacob E. Crawford
affiliations: label: 11
institution: Verily Life Sciences, South San Francisco
country: USA
name: 11 Verily Life Sciences, South San Francisco , California, USA .
orcid: http://orcid.org/0000-0003-4007-6731
last_name: Glassford
first_name: William J.
name: William J. Glassford
affiliations: label: 12
institution: Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Biochemistry and Molecular Biophysics, Columbia University
country: USA
name: 12 Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Biochemistry and Molecular Biophysics, Columbia University , New York, New York, USA .
orcid: http://orcid.org/0000-0001-7868-3321
last_name: Herre
first_name: Margaret
name: Margaret Herre
affiliations: label: 1
institution: Laboratory of Neurogenetics and Behavior, The Rockefeller University
country: USA
name: Laboratory of Neurogenetics and Behavior, The Rockefeller University , New York, New York, USA .
label: 3
institution: Kavli Neural Systems Institute, New York
country: USA
name: Kavli Neural Systems Institute, New York , New York, USA .
orcid: http://orcid.org/0000-0003-2653-760X
last_name: Redmond
first_name: Seth N.
name: Seth N. Redmond
affiliations: label: 13
institution: Broad Institute of MIT and Harvard, Cambridge
country: USA
name: 13 Broad Institute of MIT and Harvard, Cambridge , Massachusetts, USA .
label: 14
institution: Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health
country: USA
name: 14 Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health , Boston, Massachusetts, USA .
orcid: http://orcid.org/0000-0001-7129-4753
last_name: Rose
first_name: Noah H.
name: Noah H. Rose
affiliations: label: 15
institution: Department of Ecology and Evolutionary Biology, Princeton University
country: USA
name: 15 Department of Ecology and Evolutionary Biology, Princeton University , Princeton, New Jersey, USA .
orcid: http://orcid.org/0000-0002-8927-1063
last_name: Weedall
first_name: Gareth D.
name: Gareth D. Weedall
affiliations: label: 16
institution: Vector Biology Department, Liverpool School of Tropical Medicine
country: United Kingdom
name: 16 Vector Biology Department, Liverpool School of Tropical Medicine , Liverpool, United Kingdom .
label: 17
institution: Liverpool John Moores University, Liverpool
country: United Kingdom
name: 17 Liverpool John Moores University, Liverpool , United Kingdom .
orcid: http://orcid.org/0000-0002-1207-5566
last_name: Wu
first_name: Yang
name: Yang Wu
affiliations: label: 18
institution: Department of Pathogen Biology, School of Public Health, Southern Medical University
country: China
name: 18 Department of Pathogen Biology, School of Public Health, Southern Medical University , Guangzhou, China .
label: 19
institution: Department of Biochemistry, Fralin Life Science Institute, Virginia Tech
country: USA
name: 19 Department of Biochemistry, Fralin Life Science Institute, Virginia Tech , Blacksburg, Virginia, USA .
orcid: http://orcid.org/0000-0001-9849-865X
last_name: Batra
first_name: Sanjit S.
name: Sanjit S. Batra
affiliations: label: 4
institution: The Center for Genome Architecture, Baylor College of Medicine
country: USA
name: The Center for Genome Architecture, Baylor College of Medicine , Houston, Texas, USA .
label: 5
institution: Department of Molecular and Human Genetics, Baylor College of Medicine
country: USA
name: Department of Molecular and Human Genetics, Baylor College of Medicine , Houston, Texas, USA .
label: 6
institution: Departments of Computer Science and Computational and Applied Mathematics, Rice University
country: USA
name: Departments of Computer Science and Computational and Applied Mathematics, Rice University , Houston, Texas, USA .
orcid: http://orcid.org/0000-0002-9616-6149
last_name: Brito-Sierra
first_name: Carlos A.
name: Carlos A. Brito-Sierra
affiliations: label: 20
institution: Department of Entomology, Purdue University
country: USA
name: 20 Department of Entomology, Purdue University , West Lafayette, Indiana, USA .
label: 21
institution: Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University
country: USA
name: 21 Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University , West Lafayette, Indiana, USA .
orcid: http://orcid.org/0000-0001-5852-8666
last_name: Buckingham
first_name: Steven D.
name: Steven D. Buckingham
affiliations: label: 22
institution: Centre for Respiratory Biology, UCL Respiratory, University College London
country: United Kingdom
name: 22 Centre for Respiratory Biology, UCL Respiratory, University College London , London, United Kingdom .
orcid: http://orcid.org/0000-0002-6384-1259
last_name: Campbell
first_name: Corey L
name: Corey L Campbell
affiliations: label: 23
institution: Department of Microbiology, Immunology and Pathology, Colorado State University
country: USA
name: 23 Department of Microbiology, Immunology and Pathology, Colorado State University , Fort Collins, Colorado, USA .
orcid: http://orcid.org/0000-0002-2772-8208
last_name: Chan
first_name: Saki
name: Saki Chan
affiliations: label: 24
institution: Bionano Genomics, San Diego
country: USA
name: 24 Bionano Genomics, San Diego , California, USA .
orcid: http://orcid.org/0000-0001-7691-4835
last_name: Cox
first_name: Eric
name: Eric Cox
affiliations: label: 25
institution: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health
country: USA
name: 25 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, Maryland, USA .
orcid: http://orcid.org/0000-0003-2069-4938
last_name: Evans
first_name: Benjamin R.
name: Benjamin R. Evans
affiliations: label: 26
institution: Department of Ecology and Evolutionary Biology, Yale University
country: USA
name: 26 Department of Ecology and Evolutionary Biology, Yale University , New Haven, Connecticut, USA .
orcid: http://orcid.org/0000-0002-9671-4037
last_name: Fansiri
first_name: Thanyalak
name: Thanyalak Fansiri
affiliations: label: 27
institution: Vector Biology and Control Section, Department of Entomology, Armed Forces Research Institute of Medical Sciences (AFRIMS)
country: Thailand
name: 27 Vector Biology and Control Section, Department of Entomology, Armed Forces Research Institute of Medical Sciences (AFRIMS) , Bangkok, Thailand .
orcid: http://orcid.org/0000-0001-9790-5639
last_name: Filipović
first_name: Igor
name: Igor Filipović
affiliations: label: 28
institution: Mosquito Control Laboratory, QIMR Berghofer Medical Research Institute
country: Australia
name: 28 Mosquito Control Laboratory, QIMR Berghofer Medical Research Institute , Brisbane, Australia .
orcid: http://orcid.org/0000-0001-6869-6516
last_name: Fontaine
first_name: Albin
name: Albin Fontaine
affiliations: label: 29
institution: Insect-Virus Interactions Group, Department of Genomes and Genetics, Institut Pasteur
country: France
name: 29 Insect-Virus Interactions Group, Department of Genomes and Genetics, Institut Pasteur , Paris, France .
label: 30
institution: Unité de Parasitologie et Entomologie, Département des Maladies Infectieuses, Institut de Recherche Biomédicale des Armées
country: France
name: 30 Unité de Parasitologie et Entomologie, Département des Maladies Infectieuses, Institut de Recherche Biomédicale des Armées , Marseille, France .
label: 31
institution: Centre National de la Recherche Scientifique, Unité de Recherche Associée 3012
country: France
name: 31 Centre National de la Recherche Scientifique, Unité de Recherche Associée 3012 , Paris, France .
label: 32
institution: Aix Marseille Université, IRD (Dakar, Marseille, Papeete), AP-HM, IHU - Méditerranée Infection, UMR Vecteurs - Infections Tropicales et Méditerranéennes (VITROME)
country: France
name: 32 Aix Marseille Université, IRD (Dakar, Marseille, Papeete), AP-HM, IHU - Méditerranée Infection, UMR Vecteurs - Infections Tropicales et Méditerranéennes (VITROME) , Marseille, France .
orcid: http://orcid.org/0000-0002-5401-3988
last_name: Gloria-Soria
first_name: Andrea
name: Andrea Gloria-Soria
affiliations: label: 26
institution: Department of Ecology and Evolutionary Biology, Yale University
country: USA
name: 26 Department of Ecology and Evolutionary Biology, Yale University , New Haven, Connecticut, USA .
orcid: http://orcid.org/0000-0001-6490-8227
last_name: Hall
first_name: Richard
name: Richard Hall
affiliations: label: 8
institution: Pacific Biosciences, Menlo Park
country: USA
name: Pacific Biosciences, Menlo Park , California, USA .
orcid: http://orcid.org/0000-0001-9018-3151
last_name: Joardar
first_name: Vinita S.
name: Vinita S. Joardar
affiliations: label: 25
institution: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health
country: USA
name: 25 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, Maryland, USA .
orcid: http://orcid.org/0000-0002-7835-0890
last_name: Jones
first_name: Andrew K.
name: Andrew K. Jones
affiliations: label: 33
institution: Faculty of Health and Life Sciences, Department of Biological and Medical Sciences, Oxford Brookes University
country: United Kingdom
name: 33 Faculty of Health and Life Sciences, Department of Biological and Medical Sciences, Oxford Brookes University , Oxford, United Kingdom .
orcid: http://orcid.org/0000-0002-6842-8316
last_name: Kay
first_name: Raissa G.G.
name: Raissa G.G. Kay
affiliations: label: 34
institution: Department of Entomology, University of California Riverside
country: USA
name: 34 Department of Entomology, University of California Riverside , Riverside, California, USA .
orcid: http://orcid.org/0000-0001-8941-9761
last_name: Kodali
first_name: Vamsi K.
name: Vamsi K. Kodali
affiliations: label: 25
institution: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health
country: USA
name: 25 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, Maryland, USA .
orcid: http://orcid.org/0000-0002-3492-1102
last_name: Lee
first_name: Joyce
name: Joyce Lee
affiliations: label: 24
institution: Bionano Genomics, San Diego
country: USA
name: 24 Bionano Genomics, San Diego , California, USA .
orcid: http://orcid.org/0000-0002-2422-053X
last_name: Lycett
first_name: Gareth J.
name: Gareth J. Lycett
affiliations: label: 16
institution: Vector Biology Department, Liverpool School of Tropical Medicine
country: United Kingdom
name: 16 Vector Biology Department, Liverpool School of Tropical Medicine , Liverpool, United Kingdom .
orcid: http://orcid.org/0000-0002-7926-1881
last_name: Mitchell
first_name: Sara N.
name: Sara N. Mitchell
affiliations: label: 11
institution: Verily Life Sciences, South San Francisco
country: USA
name: 11 Verily Life Sciences, South San Francisco , California, USA .
orcid: http://orcid.org/0000-0003-0607-7183
last_name: Muehling
first_name: Jill
name: Jill Muehling
affiliations: label: 8
institution: Pacific Biosciences, Menlo Park
country: USA
name: Pacific Biosciences, Menlo Park , California, USA .
orcid: http://orcid.org/0000-0001-9311-9745
last_name: Murphy
first_name: Michael R.
name: Michael R. Murphy
affiliations: label: 25
institution: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health
country: USA
name: 25 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, Maryland, USA .
orcid: http://orcid.org/0000-0003-1336-2505
last_name: Omer
first_name: Arina D.
name: Arina D. Omer
affiliations: label: 4
institution: The Center for Genome Architecture, Baylor College of Medicine
country: USA
name: The Center for Genome Architecture, Baylor College of Medicine , Houston, Texas, USA .
label: 5
institution: Department of Molecular and Human Genetics, Baylor College of Medicine
country: USA
name: Department of Molecular and Human Genetics, Baylor College of Medicine , Houston, Texas, USA .
label: 6
institution: Departments of Computer Science and Computational and Applied Mathematics, Rice University
country: USA
name: Departments of Computer Science and Computational and Applied Mathematics, Rice University , Houston, Texas, USA .
orcid: http://orcid.org/0000-0001-6236-4297
last_name: Partridge
first_name: Frederick A.
name: Frederick A. Partridge
affiliations: label: 22
institution: Centre for Respiratory Biology, UCL Respiratory, University College London
country: United Kingdom
name: 22 Centre for Respiratory Biology, UCL Respiratory, University College London , London, United Kingdom .
orcid: http://orcid.org/0000-0002-9723-5185
last_name: Peluso
first_name: Paul
name: Paul Peluso
affiliations: label: 8
institution: Pacific Biosciences, Menlo Park
country: USA
name: Pacific Biosciences, Menlo Park , California, USA .
orcid: http://orcid.org/0000-0003-0634-6486
last_name: Aiden
first_name: Aviva Presser
name: Aviva Presser Aiden
affiliations: label: 4
institution: The Center for Genome Architecture, Baylor College of Medicine
country: USA
name: The Center for Genome Architecture, Baylor College of Medicine , Houston, Texas, USA .
label: 5
institution: Department of Molecular and Human Genetics, Baylor College of Medicine
country: USA
name: Department of Molecular and Human Genetics, Baylor College of Medicine , Houston, Texas, USA .
label: 35
institution: Department of Bioengineering, Rice University
country: USA
name: 35 Department of Bioengineering, Rice University , Houston, Texas, USA .
label: 36
institution: Department of Pediatrics, Texas Children’s Hospital
country: USA
name: 36 Department of Pediatrics, Texas Children’s Hospital , Houston, Texas, USA .
orcid: http://orcid.org/0000-0002-2916-1540
last_name: Ramasamy
first_name: Vidya
name: Vidya Ramasamy
affiliations: label: 33
institution: Faculty of Health and Life Sciences, Department of Biological and Medical Sciences, Oxford Brookes University
country: United Kingdom
name: 33 Faculty of Health and Life Sciences, Department of Biological and Medical Sciences, Oxford Brookes University , Oxford, United Kingdom .
orcid: http://orcid.org/0000-0002-3057-0093
last_name: Rašić
first_name: Gordana
name: Gordana Rašić
affiliations: label: 28
institution: Mosquito Control Laboratory, QIMR Berghofer Medical Research Institute
country: Australia
name: 28 Mosquito Control Laboratory, QIMR Berghofer Medical Research Institute , Brisbane, Australia .
orcid: http://orcid.org/0000-0002-0359-994X
last_name: Roy
first_name: Sourav
name: Sourav Roy
affiliations: label: 37
institution: Department of Entomology, Center for Disease Vector Research and Institute for Integrative Genome Biology, University of California
country: USA
name: 37 Department of Entomology, Center for Disease Vector Research and Institute for Integrative Genome Biology, University of California , Riverside, California, USA .
orcid: http://orcid.org/0000-0001-8511-3327
last_name: Saavedra-Rodriguez
first_name: Karla
name: Karla Saavedra-Rodriguez
affiliations: label: 23
institution: Department of Microbiology, Immunology and Pathology, Colorado State University
country: USA
name: 23 Department of Microbiology, Immunology and Pathology, Colorado State University , Fort Collins, Colorado, USA .
orcid: http://orcid.org/0000-0003-0405-8560
last_name: Sharan
first_name: Shruti
name: Shruti Sharan
affiliations: label: 20
institution: Department of Entomology, Purdue University
country: USA
name: 20 Department of Entomology, Purdue University , West Lafayette, Indiana, USA .
label: 21
institution: Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University
country: USA
name: 21 Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University , West Lafayette, Indiana, USA .
orcid: http://orcid.org/0000-0001-6299-7553
last_name: Sharma
first_name: Atashi
name: Atashi Sharma
affiliations: label: 38
institution: Department of Entomology, Fralin Life Science Institute, Virginia Tech
country: USA
name: 38 Department of Entomology, Fralin Life Science Institute, Virginia Tech , Blacksburg, Virginia, USA .
orcid: http://orcid.org/0000-0001-7151-3207
last_name: Smith
first_name: Melissa Laird
name: Melissa Laird Smith
affiliations: label: 8
institution: Pacific Biosciences, Menlo Park
country: USA
name: Pacific Biosciences, Menlo Park , California, USA .
orcid: http://orcid.org/0000-0003-3138-1427
last_name: Turner
first_name: Joe
name: Joe Turner
affiliations: label: 39
institution: Institute of Integrative Biology, University of Liverpool
country: United Kingdom
name: 39 Institute of Integrative Biology, University of Liverpool , Liverpool, United Kingdom .
orcid: http://orcid.org/0000-0001-6694-6964
last_name: Weakley
first_name: Allison M.
name: Allison M. Weakley
affiliations: label: 11
institution: Verily Life Sciences, South San Francisco
country: USA
name: 11 Verily Life Sciences, South San Francisco , California, USA .
orcid: http://orcid.org/0000-0001-6776-1996
last_name: Zhao
first_name: Zhilei
name: Zhilei Zhao
affiliations: label: 15
institution: Department of Ecology and Evolutionary Biology, Princeton University
country: USA
name: 15 Department of Ecology and Evolutionary Biology, Princeton University , Princeton, New Jersey, USA .
orcid: http://orcid.org/0000-0002-6853-9884
last_name: Akbari
first_name: Omar S.
name: Omar S. Akbari
affiliations: label: 40
institution: Division of Biological Sciences, University of California
country: USA
name: 40 Division of Biological Sciences, University of California , San Diego, La Jolla, California, USA .
orcid: http://orcid.org/0000-0002-0516-0586
last_name: Black
first_name: William C.
name: William C. Black
affiliations: label: 23
institution: Department of Microbiology, Immunology and Pathology, Colorado State University
country: USA
name: 23 Department of Microbiology, Immunology and Pathology, Colorado State University , Fort Collins, Colorado, USA .
orcid: http://orcid.org/0000-0003-3612-6169
last_name: Cao
first_name: Han
name: Han Cao
affiliations: label: 24
institution: Bionano Genomics, San Diego
country: USA
name: 24 Bionano Genomics, San Diego , California, USA .
orcid: http://orcid.org/0000-0002-3786-6209
last_name: Darby
first_name: Alistair C.
name: Alistair C. Darby
affiliations: label: 39
institution: Institute of Integrative Biology, University of Liverpool
country: United Kingdom
name: 39 Institute of Integrative Biology, University of Liverpool , Liverpool, United Kingdom .
orcid: http://orcid.org/0000-0003-2983-8934
last_name: Hill
first_name: Catherine
name: Catherine Hill
affiliations: label: 20
institution: Department of Entomology, Purdue University
country: USA
name: 20 Department of Entomology, Purdue University , West Lafayette, Indiana, USA .
label: 21
institution: Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University
country: USA
name: 21 Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University , West Lafayette, Indiana, USA .
orcid: http://orcid.org/0000-0003-4792-2945
last_name: Johnston
first_name: J. Spencer
name: J. Spencer Johnston
affiliations: label: 41
institution: Department of Entomology, Texas A&M University
country: USA
name: 41 Department of Entomology, Texas A&M University , College Station, Texas, USA .
orcid: http://orcid.org/0000-0001-9311-9745
last_name: Murphy
first_name: Terence D.
name: Terence D. Murphy
affiliations: label: 25
institution: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health
country: USA
name: 25 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, Maryland, USA .
orcid: http://orcid.org/0000-0001-6361-813X
last_name: Raikhel
first_name: Alexander S.
name: Alexander S. Raikhel
affiliations: label: 37
institution: Department of Entomology, Center for Disease Vector Research and Institute for Integrative Genome Biology, University of California
country: USA
name: 37 Department of Entomology, Center for Disease Vector Research and Institute for Integrative Genome Biology, University of California , Riverside, California, USA .
orcid: http://orcid.org/0000-0003-0705-5242
last_name: Sattelle
first_name: David B.
name: David B. Sattelle
affiliations: label: 22
institution: Centre for Respiratory Biology, UCL Respiratory, University College London
country: United Kingdom
name: 22 Centre for Respiratory Biology, UCL Respiratory, University College London , London, United Kingdom .
orcid: http://orcid.org/0000-0002-5790-3548
last_name: Sharakhov
first_name: Igor V.
name: Igor V. Sharakhov
affiliations: label: 38
institution: Department of Entomology, Fralin Life Science Institute, Virginia Tech
country: USA
name: 38 Department of Entomology, Fralin Life Science Institute, Virginia Tech , Blacksburg, Virginia, USA .
label: 42
institution: Laboratory of Ecology, Genetics, and Environmental Protection, Tomsk State University
country: Russia
name: 42 Laboratory of Ecology, Genetics, and Environmental Protection, Tomsk State University , Tomsk, Russia .
orcid: http://orcid.org/0000-0002-6444-4159
last_name: White
first_name: Bradley J.
name: Bradley J. White
affiliations: label: 11
institution: Verily Life Sciences, South San Francisco
country: USA
name: 11 Verily Life Sciences, South San Francisco , California, USA .
orcid: http://orcid.org/0000-0001-6776-1996
last_name: Zhao
first_name: Li
name: Li Zhao
affiliations: label: 43
institution: Laboratory of Evolutionary Genetics and Genomics, The Rockefeller University
country: USA
name: 43 Laboratory of Evolutionary Genetics and Genomics, The Rockefeller University , New York, New York, USA .
orcid: http://orcid.org/0000-0003-0634-6486
last_name: Aiden
first_name: Erez Lieberman
name: Erez Lieberman Aiden
affiliations: label: 4
institution: The Center for Genome Architecture, Baylor College of Medicine
country: USA
name: The Center for Genome Architecture, Baylor College of Medicine , Houston, Texas, USA .
label: 5
institution: Department of Molecular and Human Genetics, Baylor College of Medicine
country: USA
name: Department of Molecular and Human Genetics, Baylor College of Medicine , Houston, Texas, USA .
label: 6
institution: Departments of Computer Science and Computational and Applied Mathematics, Rice University
country: USA
name: Departments of Computer Science and Computational and Applied Mathematics, Rice University , Houston, Texas, USA .
label: 7
institution: Center for Theoretical and Biological Physics, Rice University
country: USA
name: Center for Theoretical and Biological Physics, Rice University , Houston, Texas, USA .
label: 13
institution: Broad Institute of MIT and Harvard, Cambridge
country: USA
name: 13 Broad Institute of MIT and Harvard, Cambridge , Massachusetts, USA .
orcid: http://orcid.org/0000-0002-4749-2765
last_name: Mann
first_name: Richard S.
name: Richard S. Mann
affiliations: label: 12
institution: Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Biochemistry and Molecular Biophysics, Columbia University
country: USA
name: 12 Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Biochemistry and Molecular Biophysics, Columbia University , New York, New York, USA .
orcid: http://orcid.org/0000-0001-5958-2138
last_name: Lambrechts
first_name: Louis
name: Louis Lambrechts
affiliations: label: 29
institution: Insect-Virus Interactions Group, Department of Genomes and Genetics, Institut Pasteur
country: France
name: 29 Insect-Virus Interactions Group, Department of Genomes and Genetics, Institut Pasteur , Paris, France .
label: 31
institution: Centre National de la Recherche Scientifique, Unité de Recherche Associée 3012
country: France
name: 31 Centre National de la Recherche Scientifique, Unité de Recherche Associée 3012 , Paris, France .
orcid: http://orcid.org/0000-0002-7651-5153
last_name: Powell
first_name: Jeffrey R.
name: Jeffrey R. Powell
affiliations: label: 26
institution: Department of Ecology and Evolutionary Biology, Yale University
country: USA
name: 26 Department of Ecology and Evolutionary Biology, Yale University , New Haven, Connecticut, USA .
orcid: http://orcid.org/0000-0002-5790-3548
last_name: Sharakhova
first_name: Maria V.
name: Maria V. Sharakhova
affiliations: label: 38
institution: Department of Entomology, Fralin Life Science Institute, Virginia Tech
country: USA
name: 38 Department of Entomology, Fralin Life Science Institute, Virginia Tech , Blacksburg, Virginia, USA .
label: 42
institution: Laboratory of Ecology, Genetics, and Environmental Protection, Tomsk State University
country: Russia
name: 42 Laboratory of Ecology, Genetics, and Environmental Protection, Tomsk State University , Tomsk, Russia .
orcid: http://orcid.org/0000-0003-4227-3819
last_name: Tu
first_name: Zhijian
name: Zhijian Tu
affiliations: label: 19
institution: Department of Biochemistry, Fralin Life Science Institute, Virginia Tech
country: USA
name: 19 Department of Biochemistry, Fralin Life Science Institute, Virginia Tech , Blacksburg, Virginia, USA .
orcid: http://orcid.org/0000-0001-8093-0950
last_name: Robertson
first_name: Hugh M.
name: Hugh M. Robertson
affiliations: label: 44
institution: Department of Entomology, University of Illinois at Urbana-Champaign
country: USA
name: 44 Department of Entomology, University of Illinois at Urbana-Champaign , Urbana, Illinois, USA .
orcid: http://orcid.org/0000-0002-8898-1768
last_name: McBride
first_name: Carolyn S.
name: Carolyn S. McBride
affiliations: label: 15
institution: Department of Ecology and Evolutionary Biology, Princeton University
country: USA
name: 15 Department of Ecology and Evolutionary Biology, Princeton University , Princeton, New Jersey, USA .
label: 45
institution: Princeton Neuroscience Institute, Princeton University
country: USA
name: 45 Princeton Neuroscience Institute, Princeton University , Princeton, New Jersey, USA .
orcid: http://orcid.org/0000-0002-6401-5864
last_name: Hastie
first_name: Alex R.
name: Alex R. Hastie
affiliations: label: 24
institution: Bionano Genomics, San Diego
country: USA
name: 24 Bionano Genomics, San Diego , California, USA .
orcid: http://orcid.org/0000-0003-3047-4250
last_name: Korlach
first_name: Jonas
name: Jonas Korlach
affiliations: label: 8
institution: Pacific Biosciences, Menlo Park
country: USA
name: Pacific Biosciences, Menlo Park , California, USA .
orcid: http://orcid.org/0000-0002-1665-9323
last_name: Neafsey
first_name: Daniel E.
name: Daniel E. Neafsey
affiliations: label: 13
institution: Broad Institute of MIT and Harvard, Cambridge
country: USA
name: 13 Broad Institute of MIT and Harvard, Cambridge , Massachusetts, USA .
label: 14
institution: Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health
country: USA
name: 14 Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health , Boston, Massachusetts, USA .
orcid: http://orcid.org/0000-0003-2983-8934
last_name: Phllippy
first_name: Adam M.
name: Adam M. Phllippy
affiliations: label: 9
institution: National Human Genome Research Institute, National Institutes of Health
country: USA
name: National Human Genome Research Institute, National Institutes of Health , Bethesda, Maryland, USA .
orcid: http://orcid.org/0000-0002-6060-8099
last_name: Vosshall
first_name: Leslie B.
name: Leslie B. Vosshall
affiliations: label: 1
institution: Laboratory of Neurogenetics and Behavior, The Rockefeller University
country: USA
name: Laboratory of Neurogenetics and Behavior, The Rockefeller University , New York, New York, USA .
label: 2
institution: Howard Hughes Medical Institute, New York
country: USA
name: Howard Hughes Medical Institute, New York , New York, USA .
label: 3
institution: Kavli Neural Systems Institute, New York
country: USA
name: Kavli Neural Systems Institute, New York , New York, USA .
Affiliations: label: 1
institution: Laboratory of Neurogenetics and Behavior, The Rockefeller University
country: USA
name: Laboratory of Neurogenetics and Behavior, The Rockefeller University , New York, New York, USA .
label: 2
institution: Howard Hughes Medical Institute, New York
country: USA
name: Howard Hughes Medical Institute, New York , New York, USA .
label: 3
institution: Kavli Neural Systems Institute, New York
country: USA
name: Kavli Neural Systems Institute, New York , New York, USA .
label: 4
institution: The Center for Genome Architecture, Baylor College of Medicine
country: USA
name: The Center for Genome Architecture, Baylor College of Medicine , Houston, Texas, USA .
label: 5
institution: Department of Molecular and Human Genetics, Baylor College of Medicine
country: USA
name: Department of Molecular and Human Genetics, Baylor College of Medicine , Houston, Texas, USA .
label: 6
institution: Departments of Computer Science and Computational and Applied Mathematics, Rice University
country: USA
name: Departments of Computer Science and Computational and Applied Mathematics, Rice University , Houston, Texas, USA .
label: 7
institution: Center for Theoretical and Biological Physics, Rice University
country: USA
name: Center for Theoretical and Biological Physics, Rice University , Houston, Texas, USA .
label: 8
institution: Pacific Biosciences, Menlo Park
country: USA
name: Pacific Biosciences, Menlo Park , California, USA .
label: 9
institution: National Human Genome Research Institute, National Institutes of Health
country: USA
name: National Human Genome Research Institute, National Institutes of Health , Bethesda, Maryland, USA .
label: 10
institution: Division of Biology and Biological Engineering, California Institute of Technology
country: USA
name: 10 Division of Biology and Biological Engineering, California Institute of Technology , Pasadena, California, USA .
label: 11
institution: Verily Life Sciences, South San Francisco
country: USA
name: 11 Verily Life Sciences, South San Francisco , California, USA .
label: 12
institution: Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Biochemistry and Molecular Biophysics, Columbia University
country: USA
name: 12 Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Biochemistry and Molecular Biophysics, Columbia University , New York, New York, USA .
label: 13
institution: Broad Institute of MIT and Harvard, Cambridge
country: USA
name: 13 Broad Institute of MIT and Harvard, Cambridge , Massachusetts, USA .
label: 14
institution: Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health
country: USA
name: 14 Department of Immunology and Infectious Disease, Harvard T.H. Chan School of Public Health , Boston, Massachusetts, USA .
label: 15
institution: Department of Ecology and Evolutionary Biology, Princeton University
country: USA
name: 15 Department of Ecology and Evolutionary Biology, Princeton University , Princeton, New Jersey, USA .
label: 16
institution: Vector Biology Department, Liverpool School of Tropical Medicine
country: United Kingdom
name: 16 Vector Biology Department, Liverpool School of Tropical Medicine , Liverpool, United Kingdom .
label: 17
institution: Liverpool John Moores University, Liverpool
country: United Kingdom
name: 17 Liverpool John Moores University, Liverpool , United Kingdom .
label: 18
institution: Department of Pathogen Biology, School of Public Health, Southern Medical University
country: China
name: 18 Department of Pathogen Biology, School of Public Health, Southern Medical University , Guangzhou, China .
label: 19
institution: Department of Biochemistry, Fralin Life Science Institute, Virginia Tech
country: USA
name: 19 Department of Biochemistry, Fralin Life Science Institute, Virginia Tech , Blacksburg, Virginia, USA .
label: 20
institution: Department of Entomology, Purdue University
country: USA
name: 20 Department of Entomology, Purdue University , West Lafayette, Indiana, USA .
label: 21
institution: Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University
country: USA
name: 21 Purdue Institute for Inflammation, Immunology and Infectious Disease, Purdue University , West Lafayette, Indiana, USA .
label: 22
institution: Centre for Respiratory Biology, UCL Respiratory, University College London
country: United Kingdom
name: 22 Centre for Respiratory Biology, UCL Respiratory, University College London , London, United Kingdom .
label: 23
institution: Department of Microbiology, Immunology and Pathology, Colorado State University
country: USA
name: 23 Department of Microbiology, Immunology and Pathology, Colorado State University , Fort Collins, Colorado, USA .
label: 24
institution: Bionano Genomics, San Diego
country: USA
name: 24 Bionano Genomics, San Diego , California, USA .
label: 25
institution: National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health
country: USA
name: 25 National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health , Bethesda, Maryland, USA .
label: 26
institution: Department of Ecology and Evolutionary Biology, Yale University
country: USA
name: 26 Department of Ecology and Evolutionary Biology, Yale University , New Haven, Connecticut, USA .
label: 27
institution: Vector Biology and Control Section, Department of Entomology, Armed Forces Research Institute of Medical Sciences (AFRIMS)
country: Thailand
name: 27 Vector Biology and Control Section, Department of Entomology, Armed Forces Research Institute of Medical Sciences (AFRIMS) , Bangkok, Thailand .
label: 28
institution: Mosquito Control Laboratory, QIMR Berghofer Medical Research Institute
country: Australia
name: 28 Mosquito Control Laboratory, QIMR Berghofer Medical Research Institute , Brisbane, Australia .
label: 29
institution: Insect-Virus Interactions Group, Department of Genomes and Genetics, Institut Pasteur
country: France
name: 29 Insect-Virus Interactions Group, Department of Genomes and Genetics, Institut Pasteur , Paris, France .
label: 30
institution: Unité de Parasitologie et Entomologie, Département des Maladies Infectieuses, Institut de Recherche Biomédicale des Armées
country: France
name: 30 Unité de Parasitologie et Entomologie, Département des Maladies Infectieuses, Institut de Recherche Biomédicale des Armées , Marseille, France .
label: 31
institution: Centre National de la Recherche Scientifique, Unité de Recherche Associée 3012
country: France
name: 31 Centre National de la Recherche Scientifique, Unité de Recherche Associée 3012 , Paris, France .
label: 32
institution: Aix Marseille Université, IRD (Dakar, Marseille, Papeete), AP-HM, IHU - Méditerranée Infection, UMR Vecteurs - Infections Tropicales et Méditerranéennes (VITROME)
country: France
name: 32 Aix Marseille Université, IRD (Dakar, Marseille, Papeete), AP-HM, IHU - Méditerranée Infection, UMR Vecteurs - Infections Tropicales et Méditerranéennes (VITROME) , Marseille, France .
label: 33
institution: Faculty of Health and Life Sciences, Department of Biological and Medical Sciences, Oxford Brookes University
country: United Kingdom
name: 33 Faculty of Health and Life Sciences, Department of Biological and Medical Sciences, Oxford Brookes University , Oxford, United Kingdom .
label: 34
institution: Department of Entomology, University of California Riverside
country: USA
name: 34 Department of Entomology, University of California Riverside , Riverside, California, USA .
label: 35
institution: Department of Bioengineering, Rice University
country: USA
name: 35 Department of Bioengineering, Rice University , Houston, Texas, USA .
label: 36
institution: Department of Pediatrics, Texas Children’s Hospital
country: USA
name: 36 Department of Pediatrics, Texas Children’s Hospital , Houston, Texas, USA .
label: 37
institution: Department of Entomology, Center for Disease Vector Research and Institute for Integrative Genome Biology, University of California
country: USA
name: 37 Department of Entomology, Center for Disease Vector Research and Institute for Integrative Genome Biology, University of California , Riverside, California, USA .
label: 38
institution: Department of Entomology, Fralin Life Science Institute, Virginia Tech
country: USA
name: 38 Department of Entomology, Fralin Life Science Institute, Virginia Tech , Blacksburg, Virginia, USA .
label: 39
institution: Institute of Integrative Biology, University of Liverpool
country: United Kingdom
name: 39 Institute of Integrative Biology, University of Liverpool , Liverpool, United Kingdom .
label: 40
institution: Division of Biological Sciences, University of California
country: USA
name: 40 Division of Biological Sciences, University of California , San Diego, La Jolla, California, USA .
label: 41
institution: Department of Entomology, Texas A&M University
country: USA
name: 41 Department of Entomology, Texas A&M University , College Station, Texas, USA .
label: 42
institution: Laboratory of Ecology, Genetics, and Environmental Protection, Tomsk State University
country: Russia
name: 42 Laboratory of Ecology, Genetics, and Environmental Protection, Tomsk State University , Tomsk, Russia .
label: 43
institution: Laboratory of Evolutionary Genetics and Genomics, The Rockefeller University
country: USA
name: 43 Laboratory of Evolutionary Genetics and Genomics, The Rockefeller University , New York, New York, USA .
label: 44
institution: Department of Entomology, University of Illinois at Urbana-Champaign
country: USA
name: 44 Department of Entomology, University of Illinois at Urbana-Champaign , Urbana, Illinois, USA .
label: 45
institution: Princeton Neuroscience Institute, Princeton University
country: USA
name: 45 Princeton Neuroscience Institute, Princeton University , Princeton, New Jersey, USA .
Field: Agricultural and Biological Sciences
Document type: preprint
Year: 2017