dataesr/affiliations-benchmark huggingface dataset:
Title: Inferring weighted gene annotations from expression data
Authors: last_name: Cary
first_name: Michael
name: Michael Cary
affiliations: label: 1
institution: Program in Biomedical Informatics Biophysics University of California at San Francisco
country: USA
name: Program in Biomedical Informatics Biophysics University of California at San Francisco , San Francisco, California 94158, USA
label: 2
institution: Department of Biochemistry and Biophysics University of California at San Francisco
country: USA
name: Department of Biochemistry and Biophysics University of California at San Francisco , San Francisco, California 94158, USA
last_name: Kenyon
first_name: Cynthia
name: Cynthia Kenyon
affiliations: label: 1
institution: Program in Biomedical Informatics Biophysics University of California at San Francisco
country: USA
name: Program in Biomedical Informatics Biophysics University of California at San Francisco , San Francisco, California 94158, USA
label: 2
institution: Department of Biochemistry and Biophysics University of California at San Francisco
country: USA
name: Department of Biochemistry and Biophysics University of California at San Francisco , San Francisco, California 94158, USA
Affiliations: label: 1
institution: Program in Biomedical Informatics Biophysics University of California at San Francisco
country: USA
name: Program in Biomedical Informatics Biophysics University of California at San Francisco , San Francisco, California 94158, USA
label: 2
institution: Department of Biochemistry and Biophysics University of California at San Francisco
country: USA
name: Department of Biochemistry and Biophysics University of California at San Francisco , San Francisco, California 94158, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: Integrating long-range connectivity information into de Bruijn graphs
Authors: orcid: http://orcid.org/0000-0002-2378-4886
last_name: Turner
first_name: Isaac
name: Isaac Turner
corresponding: yes
affiliations: label: 1
institution: Wellcome Trust Centre for Human Genetics
country: UK
name: Wellcome Trust Centre for Human Genetics , Oxford, OX3 7BN, UK
notes: These authors contributed equally to the work
orcid: http://orcid.org/0000-0002-5054-3527
last_name: Garimella
first_name: Kiran V
name: Kiran V Garimella
corresponding: yes
affiliations: label: 1
institution: Wellcome Trust Centre for Human Genetics
country: UK
name: Wellcome Trust Centre for Human Genetics , Oxford, OX3 7BN, UK
label: 2
institution: Big Data Institute, Li Ka Shing Centre for Health Information and Discovery
country: UK
name: Big Data Institute, Li Ka Shing Centre for Health Information and Discovery , Oxford, OX3 7LF, UK
notes: These authors contributed equally to the work
orcid: http://orcid.org/0000-0001-8466-7547
last_name: Iqbal
first_name: Zamin
name: Zamin Iqbal
affiliations: label: 1
institution: Wellcome Trust Centre for Human Genetics
country: UK
name: Wellcome Trust Centre for Human Genetics , Oxford, OX3 7BN, UK
label: 3
institution: European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus
country: UK
name: European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus , Hinxton, CB101SD, UK
orcid: http://orcid.org/0000-0002-5012-4162
last_name: McVean
first_name: Gil
name: Gil McVean
affiliations: label: 1
institution: Wellcome Trust Centre for Human Genetics
country: UK
name: Wellcome Trust Centre for Human Genetics , Oxford, OX3 7BN, UK
label: 2
institution: Big Data Institute, Li Ka Shing Centre for Health Information and Discovery
country: UK
name: Big Data Institute, Li Ka Shing Centre for Health Information and Discovery , Oxford, OX3 7LF, UK
Affiliations: label: 1
institution: Wellcome Trust Centre for Human Genetics
country: UK
name: Wellcome Trust Centre for Human Genetics , Oxford, OX3 7BN, UK
label: 2
institution: Big Data Institute, Li Ka Shing Centre for Health Information and Discovery
country: UK
name: Big Data Institute, Li Ka Shing Centre for Health Information and Discovery , Oxford, OX3 7LF, UK
label: 3
institution: European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus
country: UK
name: European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus , Hinxton, CB101SD, UK
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Temperature preference biases parental genome retention during hybrid evolution
Authors: orcid: http://orcid.org/0000-0002-2864-1315
last_name: Heil
first_name: Caiti Smukowski
name: Caiti Smukowski Heil
affiliations: label: 1
institution: Genome Sciences Department
name: Genome Sciences Department , University of Washington, Seattle, WA
last_name: Large
first_name: Christopher R. L.
name: Christopher R. L. Large
affiliations: label: 1
institution: Genome Sciences Department
name: Genome Sciences Department , University of Washington, Seattle, WA
last_name: Patterson
first_name: Kira
name: Kira Patterson
affiliations: label: 1
institution: Genome Sciences Department
name: Genome Sciences Department , University of Washington, Seattle, WA
notes: Current address: National Heart, Lung, and Blood Institute, Bethesda, MD
orcid: http://orcid.org/0000-0001-9944-2666
last_name: Dunham
first_name: Maitreya J.
name: Maitreya J. Dunham
corresponding: yes
affiliations: label: 1
institution: Genome Sciences Department
name: Genome Sciences Department , University of Washington, Seattle, WA
Affiliations: label: 1
institution: Genome Sciences Department
name: Genome Sciences Department , University of Washington, Seattle, WA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: A pan-cancer analysis of prognostic genes
Authors: last_name: Anaya
first_name: Jordan
name: Jordan Anaya
corresponding: yes
affiliations: label: 1
institution: omnesres.com
name: omnesres.com , email: omnesresnetwork@gmail.com , twitter: @omnesresnetwork
Affiliations: label: 1
institution: omnesres.com
name: omnesres.com , email: omnesresnetwork@gmail.com , twitter: @omnesresnetwork
Field: Medicine
Document type: preprint
Year: 2015
Title: Study on physicochemical properties and microbial diversity of flammulina velutipes residue during rapid fermentation
Authors: last_name: Shi
first_name: Guangying
name: Guangying Shi
affiliations: label: a
institution: College of Water Resources & Civil Engineering, China Agricultural University
country: China
name: College of Water Resources & Civil Engineering, China Agricultural University , Tsinghua East Road, Haidian District, Beijing, 100083, China
last_name: Wang
first_name: Yuxin
name: Yuxin Wang
corresponding: yes
affiliations: label: a
institution: College of Water Resources & Civil Engineering, China Agricultural University
country: China
name: College of Water Resources & Civil Engineering, China Agricultural University , Tsinghua East Road, Haidian District, Beijing, 100083, China
last_name: Wang
first_name: Pingzhi
name: Pingzhi Wang
affiliations: label: a
institution: College of Water Resources & Civil Engineering, China Agricultural University
country: China
name: College of Water Resources & Civil Engineering, China Agricultural University , Tsinghua East Road, Haidian District, Beijing, 100083, China
last_name: Gu
first_name: Yizhu
name: Yizhu Gu
affiliations: label: a
institution: College of Water Resources & Civil Engineering, China Agricultural University
country: China
name: College of Water Resources & Civil Engineering, China Agricultural University , Tsinghua East Road, Haidian District, Beijing, 100083, China
Affiliations: label: a
institution: College of Water Resources & Civil Engineering, China Agricultural University
country: China
name: College of Water Resources & Civil Engineering, China Agricultural University , Tsinghua East Road, Haidian District, Beijing, 100083, China
Field: Engineering
Document type: preprint
Year: 2018
Title: Synergy of SMC and Topoisomerase Creates a Universal Pathway to Simplify Genome Topology
Authors: orcid: http://orcid.org/0000-0003-3680-9488
last_name: Orlandini
first_name: Enzo
name: Enzo Orlandini
affiliations: label: 1
institution: Dipartimento di Fisica e Astronomia “Galileo Galilei”, sezione INFN, Università degli Studi di Padova
country: Italy
name: Dipartimento di Fisica e Astronomia “Galileo Galilei”, sezione INFN, Università degli Studi di Padova , via Marzolo 8, I-35131 Padova Italy
last_name: Marenduzzo
first_name: Davide
name: Davide Marenduzzo
affiliations: label: 2
institution: School of Physics and Astronomy, University of Edinburgh
country: UK
name: School of Physics and Astronomy, University of Edinburgh , Peter Guthrie Tait Road, Edinburgh, EH9 3FD, UK
orcid: http://orcid.org/0000-0003-2186-6869
last_name: Michieletto
first_name: Davide
name: Davide Michieletto
affiliations: label: 2
institution: School of Physics and Astronomy, University of Edinburgh
country: UK
name: School of Physics and Astronomy, University of Edinburgh , Peter Guthrie Tait Road, Edinburgh, EH9 3FD, UK
Affiliations: label: 1
institution: Dipartimento di Fisica e Astronomia “Galileo Galilei”, sezione INFN, Università degli Studi di Padova
country: Italy
name: Dipartimento di Fisica e Astronomia “Galileo Galilei”, sezione INFN, Università degli Studi di Padova , via Marzolo 8, I-35131 Padova Italy
label: 2
institution: School of Physics and Astronomy, University of Edinburgh
country: UK
name: School of Physics and Astronomy, University of Edinburgh , Peter Guthrie Tait Road, Edinburgh, EH9 3FD, UK
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Lysis, Lysogeny, and Virus-Microbe Ratios
Authors: last_name: Weitz
first_name: Joshua S.
name: Joshua S. Weitz
affiliations: label: 1
institution: School of Biology, Georgia Institute of Technology
country: USA
name: School of Biology, Georgia Institute of Technology , Atlanta, GA, USA
label: 2
institution: School of Physics, Georgia Institute of Technology
country: USA
name: School of Physics, Georgia Institute of Technology , Atlanta, GA, USA
notes: Electronic address: jsweitz@gatech.edu
last_name: Beckett
first_name: Stephen J.
name: Stephen J. Beckett
affiliations: label: 1
institution: School of Biology, Georgia Institute of Technology
country: USA
name: School of Biology, Georgia Institute of Technology , Atlanta, GA, USA
last_name: Brum
first_name: Jennifer R.
name: Jennifer R. Brum
affiliations: label: 3
institution: Department of Microbiology, The Ohio State University
country: USA
name: Department of Microbiology, The Ohio State University , Columbus, OH, USA
last_name: Cael
first_name: B. B.
name: B. B. Cael
affiliations: label: 4
institution: Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology Cambridge
country: USA
name: Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology Cambridge , MA, USA
label: 5
institution: Woods Hole Oceanographic Institution
country: USA
name: Woods Hole Oceanographic Institution , Woods Hole, MA, USA
last_name: Dushoff
first_name: Jonathan
name: Jonathan Dushoff
affiliations: label: 6
institution: Department of Biology, McMaster University
country: Canada
name: Department of Biology, McMaster University , Hamilton, ON, Canada
Affiliations: label: 1
institution: School of Biology, Georgia Institute of Technology
country: USA
name: School of Biology, Georgia Institute of Technology , Atlanta, GA, USA
label: 2
institution: School of Physics, Georgia Institute of Technology
country: USA
name: School of Physics, Georgia Institute of Technology , Atlanta, GA, USA
label: 3
institution: Department of Microbiology, The Ohio State University
country: USA
name: Department of Microbiology, The Ohio State University , Columbus, OH, USA
label: 4
institution: Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology Cambridge
country: USA
name: Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology Cambridge , MA, USA
label: 5
institution: Woods Hole Oceanographic Institution
country: USA
name: Woods Hole Oceanographic Institution , Woods Hole, MA, USA
label: 6
institution: Department of Biology, McMaster University
country: Canada
name: Department of Biology, McMaster University , Hamilton, ON, Canada
Field: Environmental Science
Document type: preprint
Year: 2016
Title: Comparative analysis of variation and selection in the HCV genome
Authors: last_name: Patiño-Galindo
first_name: Juan Ángel
name: Juan Ángel Patiño-Galindo
corresponding: yes
orcid: http://orcid.org/0000-0002-0879-5798
last_name: González-Candelas
first_name: Fernando
name: Fernando González-Candelas
Affiliations: institution: Unidad Mixta Infección y Salud Pública FISABIO-CSISP / Universitat de València
country: SPAIN
name: Unidad Mixta Infección y Salud Pública FISABIO-CSISP / Universitat de València . CIBERESP, Valéncia. SPAIN .
Field: Medicine
Document type: preprint
Year: 2016
Title: Estimating the current burden of Chagas disease in Mexico: a systematic review of epidemiological surveys from 2006 to 2017
Authors: last_name: Arnal
first_name: Audrey
name: Audrey Arnal
corresponding: yes
affiliations: label: 1
institution: Centro de Investigaciones Regionales Dr Hideyo Noguchi
country: México
name: Centro de Investigaciones Regionales Dr Hideyo Noguchi , Universidad Autónoma de Yucatán, calle 96 s/n x av. Jacinto Canek y calle 47, Col. Paseo de las Fuentes, CP 97225, Mérida, Yucatán, México
last_name: Waleckx
first_name: Etienne
name: Etienne Waleckx
affiliations: label: 1
institution: Centro de Investigaciones Regionales Dr Hideyo Noguchi
country: México
name: Centro de Investigaciones Regionales Dr Hideyo Noguchi , Universidad Autónoma de Yucatán, calle 96 s/n x av. Jacinto Canek y calle 47, Col. Paseo de las Fuentes, CP 97225, Mérida, Yucatán, México
last_name: Herrera
first_name: Claudia
name: Claudia Herrera
affiliations: label: 2
institution: Department of Tropical Medicine
country: USA
name: Department of Tropical Medicine , School of Public Health and Tropical Medicine, and Vector-Borne and Infectious Disease Research Center, Tulane University, 1440 Canal St., New Orleans, La 70112, USA
orcid: http://orcid.org/0000-0001-9376-0209
last_name: Dumonteil
first_name: Eric
name: Eric Dumonteil
affiliations: label: 2
institution: Department of Tropical Medicine
country: USA
name: Department of Tropical Medicine , School of Public Health and Tropical Medicine, and Vector-Borne and Infectious Disease Research Center, Tulane University, 1440 Canal St., New Orleans, La 70112, USA
Affiliations: label: 1
institution: Centro de Investigaciones Regionales Dr Hideyo Noguchi
country: México
name: Centro de Investigaciones Regionales Dr Hideyo Noguchi , Universidad Autónoma de Yucatán, calle 96 s/n x av. Jacinto Canek y calle 47, Col. Paseo de las Fuentes, CP 97225, Mérida, Yucatán, México
label: 2
institution: Department of Tropical Medicine
country: USA
name: Department of Tropical Medicine , School of Public Health and Tropical Medicine, and Vector-Borne and Infectious Disease Research Center, Tulane University, 1440 Canal St., New Orleans, La 70112, USA
Field: Medicine
Document type: preprint
Year: 2018
Title: Rice protein models from the Nutritious Rice for the World Project
Authors: orcid: http://orcid.org/0000-0002-5209-2248
last_name: Hung
first_name: Ling-Hong
name: Ling-Hong Hung
affiliations: label: 1
institution: Institute of Technology, University of Washington
name: Institute of Technology, University of Washington Tacoma 1900 Commerce Street Tacoma WA 98402-3100
orcid: http://orcid.org/0000-0001-9069-8497
last_name: Samudrala
first_name: Ram
name: Ram Samudrala
corresponding: yes
affiliations: label: 2
institution: Department of Biomedical Informatics School of Medicine and Biomedical Sciences State University of New York
name: Department of Biomedical Informatics School of Medicine and Biomedical Sciences State University of New York (SUNY) Buffalo, NY 14620
Affiliations: label: 1
institution: Institute of Technology, University of Washington
name: Institute of Technology, University of Washington Tacoma 1900 Commerce Street Tacoma WA 98402-3100
label: 2
institution: Department of Biomedical Informatics School of Medicine and Biomedical Sciences State University of New York
name: Department of Biomedical Informatics School of Medicine and Biomedical Sciences State University of New York (SUNY) Buffalo, NY 14620
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions
Authors: orcid: http://orcid.org/0000-0002-9035-2143
last_name: Waters
first_name: Nicholas R
name: Nicholas R Waters
corresponding: yes
affiliations: label: 1
institution: National University of Ireland
name: National University of Ireland ,Galway
label: 2
institution: The James Hutton Institute
name: The James Hutton Institute , Dundee, Scotland
orcid: http://orcid.org/0000-0001-7522-9158
last_name: Abram
first_name: Florence
name: Florence Abram
affiliations: label: 1
institution: National University of Ireland
name: National University of Ireland ,Galway
orcid: http://orcid.org/0000-0002-2949-6180
last_name: Brennan
first_name: Fiona
name: Fiona Brennan
affiliations: label: 1
institution: National University of Ireland
name: National University of Ireland ,Galway
label: 3
name: Teagasc, Johnstown Castle, Wexford
last_name: Holmes
first_name: Ashleigh
name: Ashleigh Holmes
affiliations: label: 2
institution: The James Hutton Institute
name: The James Hutton Institute , Dundee, Scotland
orcid: http://orcid.org/0000-0002-8392-2822
last_name: Pritchard
first_name: Leighton
name: Leighton Pritchard
affiliations: label: 2
institution: The James Hutton Institute
name: The James Hutton Institute , Dundee, Scotland
Affiliations: label: 1
institution: National University of Ireland
name: National University of Ireland ,Galway
label: 2
institution: The James Hutton Institute
name: The James Hutton Institute , Dundee, Scotland
label: 3
name: Teagasc, Johnstown Castle, Wexford
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition
Authors: last_name: Rubin
first_name: Timothy N.
name: Timothy N. Rubin
affiliations: label: 1
institution: Department of Psychological and Brain Sciences, Indiana University Bloomington
name: Department of Psychological and Brain Sciences, Indiana University Bloomington
notes: Contributed equally to this work
last_name: Koyejo
first_name: Oluwasanmi
name: Oluwasanmi Koyejo
affiliations: label: 2
institution: Department of Psychology, Stanford University
name: Department of Psychology, Stanford University
label: 3
institution: Department of Computer Science, University of Illinois at UrbanaChampaign
name: Department of Computer Science, University of Illinois at UrbanaChampaign
last_name: Gorgolewski
first_name: Krzysztof J.
name: Krzysztof J. Gorgolewski
affiliations: label: 2
institution: Department of Psychology, Stanford University
name: Department of Psychology, Stanford University
last_name: Jones
first_name: Michael N.
name: Michael N. Jones
affiliations: label: 1
institution: Department of Psychological and Brain Sciences, Indiana University Bloomington
name: Department of Psychological and Brain Sciences, Indiana University Bloomington
last_name: Poldrack
first_name: Russell A.
name: Russell A. Poldrack
affiliations: label: 2
institution: Department of Psychology, Stanford University
name: Department of Psychology, Stanford University
last_name: Yarkoni
first_name: Tal
name: Tal Yarkoni
corresponding: yes
affiliations: label: 4
institution: Department of Psychology, University of Texas at Austin
name: Department of Psychology, University of Texas at Austin
notes: Contributed equally to this work
Affiliations: label: 1
institution: Department of Psychological and Brain Sciences, Indiana University Bloomington
name: Department of Psychological and Brain Sciences, Indiana University Bloomington
label: 2
institution: Department of Psychology, Stanford University
name: Department of Psychology, Stanford University
label: 3
institution: Department of Computer Science, University of Illinois at UrbanaChampaign
name: Department of Computer Science, University of Illinois at UrbanaChampaign
label: 4
institution: Department of Psychology, University of Texas at Austin
name: Department of Psychology, University of Texas at Austin
Field: Neuroscience
Document type: preprint
Year: 2016
Title: The mutation rate in human evolution and demographic inference
Authors: orcid: http://orcid.org/0000-0002-0807-1167
last_name: Scally
first_name: Aylwyn
name: Aylwyn Scally
corresponding: yes
notes: email: aos21@cam.ac.uk
Affiliations: institution: University of Cambridge
country: United Kingdom
name: Department of Genetics, University of Cambridge Downing Street, Cambridge, CB2 3EH, United Kingdom
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: Conditional interactions in literature-curated protein interaction databases
Authors: orcid: http://orcid.org/0000-0002-4496-8131
last_name: Stacey
first_name: R. Greg
name: R. Greg Stacey
corresponding: yes
affiliations: label: 1
institution: Michael Smith Laboratories, University of British Columbia
country: Canada
name: Michael Smith Laboratories, University of British Columbia , Vancouver V6T 1Z4, Canada
last_name: Skinnider
first_name: Michael A.
name: Michael A. Skinnider
affiliations: label: 1
institution: Michael Smith Laboratories, University of British Columbia
country: Canada
name: Michael Smith Laboratories, University of British Columbia , Vancouver V6T 1Z4, Canada
last_name: Chik
first_name: Jenny H. L.
name: Jenny H. L. Chik
affiliations: label: 1
institution: Michael Smith Laboratories, University of British Columbia
country: Canada
name: Michael Smith Laboratories, University of British Columbia , Vancouver V6T 1Z4, Canada
last_name: Foster
first_name: Leonard J.
name: Leonard J. Foster
corresponding: yes
affiliations: label: 1
institution: Michael Smith Laboratories, University of British Columbia
country: Canada
name: Michael Smith Laboratories, University of British Columbia , Vancouver V6T 1Z4, Canada
label: 2
institution: Department of Biochemistry, University of British Columbia
country: Canada
name: Department of Biochemistry, University of British Columbia , Vancouver V6T 1Z3, Canada
Affiliations: label: 1
institution: Michael Smith Laboratories, University of British Columbia
country: Canada
name: Michael Smith Laboratories, University of British Columbia , Vancouver V6T 1Z4, Canada
label: 2
institution: Department of Biochemistry, University of British Columbia
country: Canada
name: Department of Biochemistry, University of British Columbia , Vancouver V6T 1Z3, Canada
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Distinct ‘safe zones’ at the nuclear envelope ensure robust replication of heterochromatic chromosome regions
Authors: last_name: Ebrahimi
first_name: Hani
name: Hani Ebrahimi
last_name: Masuda
first_name: Hirohisa
name: Hirohisa Masuda
last_name: Jain
first_name: Devanshi
name: Devanshi Jain
notes: Current address: Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, NY 10065
orcid: http://orcid.org/0000-0003-2171-2587
last_name: Cooper
first_name: Julia Promisel
name: Julia Promisel Cooper
corresponding: yes
Affiliations: institution: Telomere Biology Section, LBMB, Center for Cancer Research, National Cancer Institute
country: USA
name: Telomere Biology Section, LBMB, Center for Cancer Research, National Cancer Institute , Bethesda, MD 20892 USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017