dataesr/affiliations-benchmark huggingface dataset:
Title: Open-Source Food: Nutrition, Toxicology, and Availability of Wild Edible Greens in the East Bay
Authors: orcid: http://orcid.org/0000-0002-3771-9604
last_name: Stark
first_name: Philip B.
name: Philip B. Stark
affiliations: label: 1
institution: Department of Statistics University of California
name: Department of Statistics University of California , Berkeley
notes: conceptualization, formal analysis, funding acquisition, investigation, methodology, project administration, software, supervision, visualization, writing-original draft preparation, writing-editing
stark@stat.berkeley.edu
last_name: Miller
first_name: Daphne
name: Daphne Miller
affiliations: label: 2
institution: School of Public Health University of California
name: School of Public Health University of California , Berkeley
notes: writing-original draft preparation, writing-editing
last_name: Carlson
first_name: Thomas J.
name: Thomas J. Carlson
affiliations: label: 3
institution: Department of Integrative Biology University of California
name: Department of Integrative Biology University of California , Berkeley
notes: conceptualization, investigation, methodology, project administration
last_name: Vasquez
first_name: Kristen Rasmussen de
name: Kristen Rasmussen de Vasquez
affiliations: label: 4
institution: Department of Nutrition and Toxicology University of California
name: Department of Nutrition and Toxicology University of California , Berkeley
notes: investigation, methodology
Affiliations: label: 1
institution: Department of Statistics University of California
name: Department of Statistics University of California , Berkeley
label: 2
institution: School of Public Health University of California
name: School of Public Health University of California , Berkeley
label: 3
institution: Department of Integrative Biology University of California
name: Department of Integrative Biology University of California , Berkeley
label: 4
institution: Department of Nutrition and Toxicology University of California
name: Department of Nutrition and Toxicology University of California , Berkeley
Field: Agricultural and Biological Sciences
Document type: preprint
Year: 2018
Title: Using large-scale mutagenesis to guide single amino acid scanning experiments
Authors: last_name: Gray
first_name: Vanessa E.
name: Vanessa E. Gray
affiliations: label: 1
institution: Department of Genome Sciences, University of Washington
country: USA
name: Department of Genome Sciences, University of Washington , Seattle, WA, USA
last_name: Hause
first_name: Ronald J.
name: Ronald J. Hause
affiliations: label: 1
institution: Department of Genome Sciences, University of Washington
country: USA
name: Department of Genome Sciences, University of Washington , Seattle, WA, USA
last_name: Fowler
first_name: Douglas M.
name: Douglas M. Fowler
corresponding: yes
affiliations: label: 1
institution: Department of Genome Sciences, University of Washington
country: USA
name: Department of Genome Sciences, University of Washington , Seattle, WA, USA
label: 2
institution: Department of Bioengineering, University of Washington
country: USA
name: Department of Bioengineering, University of Washington , Seattle, WA, USA
Affiliations: label: 1
institution: Department of Genome Sciences, University of Washington
country: USA
name: Department of Genome Sciences, University of Washington , Seattle, WA, USA
label: 2
institution: Department of Bioengineering, University of Washington
country: USA
name: Department of Bioengineering, University of Washington , Seattle, WA, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Quantitative RNAseq meta analysis of alternative exon usage in C. elegans
Authors: last_name: Tourasse
first_name: Nicolas
name: Nicolas Tourasse
last_name: Millet
first_name: Jonathan R. M.
name: Jonathan R. M. Millet
last_name: Dupuy
first_name: Denis
name: Denis Dupuy
corresponding: yes
Affiliations: institution: Université de Bordeaux, Inserm U1212, CNRS UMR5320, Institut Européen de Chimie et Biologie (IECB)
country: France
name: Université de Bordeaux, Inserm U1212, CNRS UMR5320, Institut Européen de Chimie et Biologie (IECB) , 2, rue Robert Escarpit, 33607 Pessac, France
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Mycobacterial infection induces a specific human innate immune response
Authors: last_name: Blischak
first_name: John D.
name: John D. Blischak
affiliations: label: 1
institution: University of Chicago
name: University of Chicago , Chicago, Illinois, 60637
last_name: Tailleux
first_name: Ludovic
name: Ludovic Tailleux
affiliations: label: 2
institution: Institut Pasteur, Mycobacterial Genetics Unit
country: France
name: Institut Pasteur, Mycobacterial Genetics Unit , rue du Dr Roux, F-75015 Paris, France
last_name: Mitrano
first_name: Amy
name: Amy Mitrano
affiliations: label: 1
institution: University of Chicago
name: University of Chicago , Chicago, Illinois, 60637
last_name: Barreiro
first_name: Luis B.
name: Luis B. Barreiro
corresponding: yes
affiliations: label: 3
institution: University of Montreal
country: Canada
name: University of Montreal , Montreal, Québec, Canada
last_name: Gilad
first_name: Yoav
name: Yoav Gilad
corresponding: yes
affiliations: label: 1
institution: University of Chicago
name: University of Chicago , Chicago, Illinois, 60637
Affiliations: label: 1
institution: University of Chicago
name: University of Chicago , Chicago, Illinois, 60637
label: 2
institution: Institut Pasteur, Mycobacterial Genetics Unit
country: France
name: Institut Pasteur, Mycobacterial Genetics Unit , rue du Dr Roux, F-75015 Paris, France
label: 3
institution: University of Montreal
country: Canada
name: University of Montreal , Montreal, Québec, Canada
Field: Medicine
Document type: preprint
Year: 2015
Title: A feature selection strategy for gene expression time series experiments with hidden Markov models
Authors: orcid: http://orcid.org/0000-0002-8261-1037
last_name: Cárdenas-Ovando
first_name: Roberto A.
name: Roberto A. Cárdenas-Ovando
affiliations: label: 1
institution: School of Engineering and Sciences, Tecnológico de Monterrey
country: Mexico
name: School of Engineering and Sciences, Tecnológico de Monterrey , Mexico City, Mexico
label: 2
institution: Computational Genomics Lab, Instituto Nacional de Medicina Genómica
country: Mexico
name: Computational Genomics Lab, Instituto Nacional de Medicina Genómica , Mexico City, Mexico
orcid: http://orcid.org/0000-0002-5159-8300
last_name: Fernández-Figueroa
first_name: Edith A.
name: Edith A. Fernández-Figueroa
affiliations: label: 2
institution: Computational Genomics Lab, Instituto Nacional de Medicina Genómica
country: Mexico
name: Computational Genomics Lab, Instituto Nacional de Medicina Genómica , Mexico City, Mexico
orcid: http://orcid.org/0000-0002-4909-3880
last_name: Rueda-Zárate
first_name: Héctor A.
name: Héctor A. Rueda-Zárate
affiliations: label: 1
institution: School of Engineering and Sciences, Tecnológico de Monterrey
country: Mexico
name: School of Engineering and Sciences, Tecnológico de Monterrey , Mexico City, Mexico
label: 2
institution: Computational Genomics Lab, Instituto Nacional de Medicina Genómica
country: Mexico
name: Computational Genomics Lab, Instituto Nacional de Medicina Genómica , Mexico City, Mexico
orcid: http://orcid.org/0000-0002-6000-3452
last_name: Noguez
first_name: Julieta
name: Julieta Noguez
affiliations: label: 1
institution: School of Engineering and Sciences, Tecnológico de Monterrey
country: Mexico
name: School of Engineering and Sciences, Tecnológico de Monterrey , Mexico City, Mexico
orcid: http://orcid.org/0000-0003-1303-0834
last_name: Rangel-Escareño
first_name: Claudia
name: Claudia Rangel-Escareño
corresponding: yes
affiliations: label: 2
institution: Computational Genomics Lab, Instituto Nacional de Medicina Genómica
country: Mexico
name: Computational Genomics Lab, Instituto Nacional de Medicina Genómica , Mexico City, Mexico
Affiliations: label: 1
institution: School of Engineering and Sciences, Tecnológico de Monterrey
country: Mexico
name: School of Engineering and Sciences, Tecnológico de Monterrey , Mexico City, Mexico
label: 2
institution: Computational Genomics Lab, Instituto Nacional de Medicina Genómica
country: Mexico
name: Computational Genomics Lab, Instituto Nacional de Medicina Genómica , Mexico City, Mexico
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Experimental evidence that thermal selection has shaped the latitudinal distribution of mitochondrial haplotypes in Australian fruit flies
Authors: last_name: Camus
first_name: M. Florencia
name: M. Florencia Camus
corresponding: yes
affiliations: label: 1
institution: School of Biological Sciences, Monash University
country: Australia
name: School of Biological Sciences, Monash University , Clayton, Victoria, 3800, Australia
label: 2
institution: Department of Genetics, Evolution & Environment, University College London
country: UK
name: Department of Genetics, Evolution & Environment, University College London , London WC1E 6BT, UK
last_name: Wolff
first_name: Jonci N.
name: Jonci N. Wolff
affiliations: label: 1
institution: School of Biological Sciences, Monash University
country: Australia
name: School of Biological Sciences, Monash University , Clayton, Victoria, 3800, Australia
last_name: Sgrò
first_name: Carla M.
name: Carla M. Sgrò
affiliations: label: 1
institution: School of Biological Sciences, Monash University
country: Australia
name: School of Biological Sciences, Monash University , Clayton, Victoria, 3800, Australia
last_name: Dowling
first_name: Damian K.
name: Damian K. Dowling
corresponding: yes
affiliations: label: 1
institution: School of Biological Sciences, Monash University
country: Australia
name: School of Biological Sciences, Monash University , Clayton, Victoria, 3800, Australia
Affiliations: label: 1
institution: School of Biological Sciences, Monash University
country: Australia
name: School of Biological Sciences, Monash University , Clayton, Victoria, 3800, Australia
label: 2
institution: Department of Genetics, Evolution & Environment, University College London
country: UK
name: Department of Genetics, Evolution & Environment, University College London , London WC1E 6BT, UK
Field: Environmental Science
Document type: preprint
Year: 2017
Title: On growth and form of the distal air exchange surfaces within the lung
Authors: last_name: Warburton
first_name: David
name: David Warburton
corresponding: yes
last_name: Wigfall
first_name: Clarence
name: Clarence Wigfall
last_name: Pollack
first_name: Harvey
name: Harvey Pollack
last_name: Koos
first_name: David
name: David Koos
last_name: AlAlam
first_name: Denise
name: Denise AlAlam
last_name: Turcatel
first_name: Gianluca
name: Gianluca Turcatel
last_name: Shi
first_name: Wei
name: Wei Shi
last_name: Fraser
first_name: Scott
name: Scott Fraser
last_name: Moats
first_name: Rex
name: Rex Moats
Affiliations: institution: The Saban Research Institute, Children’s Hospital Los Angeles and the Keck School of Medicine and the Dornsife School of Letters, Arts and Sciences of the University of Southern California
name: The Saban Research Institute, Children’s Hospital Los Angeles and the Keck School of Medicine and the Dornsife School of Letters, Arts and Sciences of the University of Southern California .
Field: Medicine
Document type: preprint
Year: 2017
Title: Analysis of contributory gut microbiota and lauric acid against necrotic enteritis in Clostridium perfringens and Eimeria side-by-side challenge model
Authors: last_name: Yang
first_name: Wen-Yuan
name: Wen-Yuan Yang
affiliations: label: 1
institution: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University
name: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University , P.O. Box 6100, Mississippi State, MS 39762
last_name: Lee
first_name: Yuejia
name: Yuejia Lee
affiliations: label: 1
institution: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University
name: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University , P.O. Box 6100, Mississippi State, MS 39762
last_name: Lu
first_name: Hsinyi
name: Hsinyi Lu
affiliations: label: 1
institution: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University
name: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University , P.O. Box 6100, Mississippi State, MS 39762
last_name: Chou
first_name: Chung-Hsi
name: Chung-Hsi Chou
affiliations: label: 2
institution: Zoonoses Research Center and School of Veterinary Medicine, National Taiwan University
country: Taiwan
name: Zoonoses Research Center and School of Veterinary Medicine, National Taiwan University , No. 1, Sec. 4, Roosevelt Road, Taipei City, 106, Taiwan
orcid: http://orcid.org/0000-0001-6015-7956
last_name: Wang
first_name: Chinling
name: Chinling Wang
corresponding: yes
affiliations: label: 1
institution: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University
name: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University , P.O. Box 6100, Mississippi State, MS 39762
Affiliations: label: 1
institution: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University
name: Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University , P.O. Box 6100, Mississippi State, MS 39762
label: 2
institution: Zoonoses Research Center and School of Veterinary Medicine, National Taiwan University
country: Taiwan
name: Zoonoses Research Center and School of Veterinary Medicine, National Taiwan University , No. 1, Sec. 4, Roosevelt Road, Taipei City, 106, Taiwan
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Genome-wide disruption of DNA methylation by 5-aza-2’-deoxycytidine in the parasitioid wasp Nasonia vitripennis
Authors: last_name: Cook
first_name: N
name: N Cook
affiliations: label: 1
institution: School of Biology, University of St Andrews
country: UK
name: School of Biology, University of St Andrews , UK
notes: These authors contributed equally
orcid: http://orcid.org/0000-0003-4027-7779
last_name: Parker
first_name: DJ
name: DJ Parker
affiliations: label: 2
institution: Department of Ecology and Evolution, University of Lausanne
country: Switzerland
name: Department of Ecology and Evolution, University of Lausanne , Switzerland
label: 3
institution: Swiss Institute of Bioinformatics
country: Switzerland
name: Swiss Institute of Bioinformatics , Lausanne, Switzerland
notes: These authors contributed equally
last_name: Turner
first_name: F
name: F Turner
affiliations: label: 4
institution: Edinburgh Genomics, School of Biological Sciences, University of Edinburgh
country: UK
name: Edinburgh Genomics, School of Biological Sciences, University of Edinburgh , UK
last_name: Tauber
first_name: E
name: E Tauber
affiliations: label: 5
institution: Faculty of Natural Sciences, University of Haifa
country: Israel
name: Faculty of Natural Sciences, University of Haifa , Israel
last_name: Pannebakker
first_name: BA
name: BA Pannebakker
affiliations: label: 6
institution: Laboratory of Genetics, Wageningen University
country: The Netherlands
name: Laboratory of Genetics, Wageningen University , The Netherlands
last_name: Shuker
first_name: DM
name: DM Shuker
affiliations: label: 1
institution: School of Biology, University of St Andrews
country: UK
name: School of Biology, University of St Andrews , UK
Affiliations: label: 1
institution: School of Biology, University of St Andrews
country: UK
name: School of Biology, University of St Andrews , UK
label: 2
institution: Department of Ecology and Evolution, University of Lausanne
country: Switzerland
name: Department of Ecology and Evolution, University of Lausanne , Switzerland
label: 3
institution: Swiss Institute of Bioinformatics
country: Switzerland
name: Swiss Institute of Bioinformatics , Lausanne, Switzerland
label: 4
institution: Edinburgh Genomics, School of Biological Sciences, University of Edinburgh
country: UK
name: Edinburgh Genomics, School of Biological Sciences, University of Edinburgh , UK
label: 5
institution: Faculty of Natural Sciences, University of Haifa
country: Israel
name: Faculty of Natural Sciences, University of Haifa , Israel
label: 6
institution: Laboratory of Genetics, Wageningen University
country: The Netherlands
name: Laboratory of Genetics, Wageningen University , The Netherlands
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Funmap2: an R package for QTL mapping using longitudinal phenotypes
Authors: last_name: Wang
first_name: Nating
name: Nating Wang
affiliations: label: 1
institution: College of Biological Sciences and Technology, Beijing Forestry University
country: PR China
name: College of Biological Sciences and Technology, Beijing Forestry University , Beijing 100083, PR China
last_name: Chu
first_name: Tinyi
name: Tinyi Chu
affiliations: label: 2
institution: Graduate field of Computational Biology, Cornell University
country: USA
name: Graduate field of Computational Biology, Cornell University , Ithaca, NY 14850, USA
last_name: Luo
first_name: Jiangtao
name: Jiangtao Luo
affiliations: label: 3
institution: Department of Biostatistics, College of Public Health, University of Nebraska Medical Center
country: USA
name: Department of Biostatistics, College of Public Health, University of Nebraska Medical Center , Omaha, NE 68198, USA
last_name: Wu
first_name: Rongling
name: Rongling Wu
affiliations: label: 1
institution: College of Biological Sciences and Technology, Beijing Forestry University
country: PR China
name: College of Biological Sciences and Technology, Beijing Forestry University , Beijing 100083, PR China
last_name: Wang
first_name: Zhong
name: Zhong Wang
affiliations: label: 1
institution: College of Biological Sciences and Technology, Beijing Forestry University
country: PR China
name: College of Biological Sciences and Technology, Beijing Forestry University , Beijing 100083, PR China
Affiliations: label: 1
institution: College of Biological Sciences and Technology, Beijing Forestry University
country: PR China
name: College of Biological Sciences and Technology, Beijing Forestry University , Beijing 100083, PR China
label: 2
institution: Graduate field of Computational Biology, Cornell University
country: USA
name: Graduate field of Computational Biology, Cornell University , Ithaca, NY 14850, USA
label: 3
institution: Department of Biostatistics, College of Public Health, University of Nebraska Medical Center
country: USA
name: Department of Biostatistics, College of Public Health, University of Nebraska Medical Center , Omaha, NE 68198, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Caspase-mediated cleavage of Murine Norovirus NS1/2 potentiates apoptosis and is required for persistent infection
Authors: last_name: Robinson
first_name: Bridget A.
name: Bridget A. Robinson
affiliations: label: 1
institution: Department of Molecular Microbiology and Immunology, Oregon Health and Science University
country: USA
name: Department of Molecular Microbiology and Immunology, Oregon Health and Science University , Portland, Oregon, USA
last_name: McCune
first_name: Broc T
name: Broc T McCune
affiliations: label: 2
institution: Department of Microbiology, University of Texas Southwestern Medical Center
country: USA
name: Department of Microbiology, University of Texas Southwestern Medical Center , Dallas, TX, USA
last_name: Peters
first_name: A. Mack
name: A. Mack Peters
affiliations: label: 1
institution: Department of Molecular Microbiology and Immunology, Oregon Health and Science University
country: USA
name: Department of Molecular Microbiology and Immunology, Oregon Health and Science University , Portland, Oregon, USA
orcid: http://orcid.org/0000-0002-4471-7666
last_name: Nice
first_name: Timothy J.
name: Timothy J. Nice
corresponding: yes
affiliations: label: 1
institution: Department of Molecular Microbiology and Immunology, Oregon Health and Science University
country: USA
name: Department of Molecular Microbiology and Immunology, Oregon Health and Science University , Portland, Oregon, USA
Affiliations: label: 1
institution: Department of Molecular Microbiology and Immunology, Oregon Health and Science University
country: USA
name: Department of Molecular Microbiology and Immunology, Oregon Health and Science University , Portland, Oregon, USA
label: 2
institution: Department of Microbiology, University of Texas Southwestern Medical Center
country: USA
name: Department of Microbiology, University of Texas Southwestern Medical Center , Dallas, TX, USA
Field: Medicine
Document type: preprint
Year: 2018
Title: DNA Topology in Chromatin is Defined by Nucleosome Spacing
Authors: last_name: Nikitina
first_name: Tatiana
name: Tatiana Nikitina
affiliations: label: 1
institution: Laboratory of Cell Biology, CCR, National Cancer Institute
country: USA
name: Laboratory of Cell Biology, CCR, National Cancer Institute NIH, Bethesda, MD, USA
last_name: Norouzi
first_name: Davood
name: Davood Norouzi
affiliations: label: 1
institution: Laboratory of Cell Biology, CCR, National Cancer Institute
country: USA
name: Laboratory of Cell Biology, CCR, National Cancer Institute NIH, Bethesda, MD, USA
last_name: Grigoryev
first_name: Sergei A.
name: Sergei A. Grigoryev
corresponding: yes
affiliations: label: 2
institution: Department of Biochemistry and Molecular Biology, Pennsylvania State University College of Medicine
country: USA
name: Department of Biochemistry and Molecular Biology, Pennsylvania State University College of Medicine Hershey, PA, USA
last_name: Zhurkin
first_name: Victor B.
name: Victor B. Zhurkin
corresponding: yes
affiliations: label: 1
institution: Laboratory of Cell Biology, CCR, National Cancer Institute
country: USA
name: Laboratory of Cell Biology, CCR, National Cancer Institute NIH, Bethesda, MD, USA
Affiliations: label: 1
institution: Laboratory of Cell Biology, CCR, National Cancer Institute
country: USA
name: Laboratory of Cell Biology, CCR, National Cancer Institute NIH, Bethesda, MD, USA
label: 2
institution: Department of Biochemistry and Molecular Biology, Pennsylvania State University College of Medicine
country: USA
name: Department of Biochemistry and Molecular Biology, Pennsylvania State University College of Medicine Hershey, PA, USA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017