dataesr/affiliations-benchmark huggingface dataset:
Title: The adaptive acquisition of single DNA segments drives metabolic evolution across E. coli lineages
Authors: orcid: http://orcid.org/0000-0003-4738-4032
last_name: Pang
first_name: Tin Yau
name: Tin Yau Pang
affiliations: label: *
institution: Bioinformatics Institute, Heinrich Heine University
name: * Bioinformatics Institute, Heinrich Heine University , Düsseldorf
notes: pang@hhu.de
orcid: http://orcid.org/0000-0003-3940-1621
last_name: Lercher
first_name: Martin J.
name: Martin J. Lercher
affiliations: label: *
institution: Bioinformatics Institute, Heinrich Heine University
name: * Bioinformatics Institute, Heinrich Heine University , Düsseldorf
notes: lercher@cs.uni-duesseldorf.de
Affiliations: label: *
institution: Bioinformatics Institute, Heinrich Heine University
name: * Bioinformatics Institute, Heinrich Heine University , Düsseldorf
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Understanding trivial challenges of microbial genomics: An assembly example
Authors: last_name: Lariviere
first_name: Delphine
name: Delphine Lariviere
affiliations: label: 1
institution: Department of Biochemistry and Molecular Biology, The Pennsylvania State University
name: Department of Biochemistry and Molecular Biology, The Pennsylvania State University
last_name: Mei
first_name: Han
name: Han Mei
affiliations: label: 1
institution: Department of Biochemistry and Molecular Biology, The Pennsylvania State University
name: Department of Biochemistry and Molecular Biology, The Pennsylvania State University
last_name: Freeberg
first_name: Mallory
name: Mallory Freeberg
affiliations: label: 2
institution: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)
country: UK
name: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Wellcome Trust Genome Campus, Hinxton, UK
orcid: http://orcid.org/0000-0003-4285-6985
last_name: Taylor
first_name: James
name: James Taylor
affiliations: label: 3
institution: Department of Biology and Computer Science, Johns Hopkins University
name: Department of Biology and Computer Science, Johns Hopkins University
orcid: http://orcid.org/0000-0002-5987-8032
last_name: Nekrutenko
first_name: Anton
name: Anton Nekrutenko
corresponding: yes
affiliations: label: 1
institution: Department of Biochemistry and Molecular Biology, The Pennsylvania State University
name: Department of Biochemistry and Molecular Biology, The Pennsylvania State University
Affiliations: label: 1
institution: Department of Biochemistry and Molecular Biology, The Pennsylvania State University
name: Department of Biochemistry and Molecular Biology, The Pennsylvania State University
label: 2
institution: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI)
country: UK
name: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Wellcome Trust Genome Campus, Hinxton, UK
label: 3
institution: Department of Biology and Computer Science, Johns Hopkins University
name: Department of Biology and Computer Science, Johns Hopkins University
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Different temporal windows for contextual fear memory destabilisation in the amygdala and hippocampus
Authors: orcid: http://orcid.org/0000-0002-2284-2482
last_name: Lee
first_name: Jonathan L. C.
name: Jonathan L. C. Lee
corresponding: yes
affiliations: label: 1
institution: University of Birmingham, School of Psychology
country: United Kingdom
name: University of Birmingham, School of Psychology , Edgbaston, Birmingham B15 2TT, United Kingdom
last_name: Amorim
first_name: Felippe E.
name: Felippe E. Amorim
affiliations: label: 2
institution: Institute of Medical Biochemistry Leopoldo de Meis, Federal University of Rio de Janeiro
country: Brazil
name: Institute of Medical Biochemistry Leopoldo de Meis, Federal University of Rio de Janeiro , Rio de Janeiro, 21941-902, Brazil
last_name: Cassini
first_name: Lindsey F.
name: Lindsey F. Cassini
affiliations: label: 1
institution: University of Birmingham, School of Psychology
country: United Kingdom
name: University of Birmingham, School of Psychology , Edgbaston, Birmingham B15 2TT, United Kingdom
last_name: Amaral
first_name: Olavo B.
name: Olavo B. Amaral
affiliations: label: 2
institution: Institute of Medical Biochemistry Leopoldo de Meis, Federal University of Rio de Janeiro
country: Brazil
name: Institute of Medical Biochemistry Leopoldo de Meis, Federal University of Rio de Janeiro , Rio de Janeiro, 21941-902, Brazil
Affiliations: label: 1
institution: University of Birmingham, School of Psychology
country: United Kingdom
name: University of Birmingham, School of Psychology , Edgbaston, Birmingham B15 2TT, United Kingdom
label: 2
institution: Institute of Medical Biochemistry Leopoldo de Meis, Federal University of Rio de Janeiro
country: Brazil
name: Institute of Medical Biochemistry Leopoldo de Meis, Federal University of Rio de Janeiro , Rio de Janeiro, 21941-902, Brazil
Field: Neuroscience
Document type: preprint
Year: 2018
Title: Ancestry informative alleles captured with reduced representation library sequencing in Theobroma cacao
Authors: orcid: http://orcid.org/0000-0002-5486-2680
last_name: Osorio-Guarín
first_name: Jaime A.
name: Jaime A. Osorio-Guarín
affiliations: label: 1
institution: Centro de Investigación Tibaitatá, Corporación Colombiana de Investigación Agropecuaria – Agrosavia
country: Colombia
name: Centro de Investigación Tibaitatá, Corporación Colombiana de Investigación Agropecuaria – Agrosavia , Mosquera, Cundinamarca, Colombia
last_name: Quackenbush
first_name: Corey R.
name: Corey R. Quackenbush
affiliations: label: 2
institution: School of Biological Sciences, Washington State University
country: United States
name: School of Biological Sciences, Washington State University , Pullman, WA, United States
label: 3
institution: Division of Molecular and Translational Sciences, U. S. Army Medical Research Institute of Infectious Diseases (USAMRIID)
country: United States
name: Division of Molecular and Translational Sciences, U. S. Army Medical Research Institute of Infectious Diseases (USAMRIID) , Fort Detrick, Md, United States
orcid: http://orcid.org/0000-0003-4076-4227
last_name: Cornejo
first_name: Omar E.
name: Omar E. Cornejo
corresponding: yes
affiliations: label: 2
institution: School of Biological Sciences, Washington State University
country: United States
name: School of Biological Sciences, Washington State University , Pullman, WA, United States
Affiliations: label: 1
institution: Centro de Investigación Tibaitatá, Corporación Colombiana de Investigación Agropecuaria – Agrosavia
country: Colombia
name: Centro de Investigación Tibaitatá, Corporación Colombiana de Investigación Agropecuaria – Agrosavia , Mosquera, Cundinamarca, Colombia
label: 2
institution: School of Biological Sciences, Washington State University
country: United States
name: School of Biological Sciences, Washington State University , Pullman, WA, United States
label: 3
institution: Division of Molecular and Translational Sciences, U. S. Army Medical Research Institute of Infectious Diseases (USAMRIID)
country: United States
name: Division of Molecular and Translational Sciences, U. S. Army Medical Research Institute of Infectious Diseases (USAMRIID) , Fort Detrick, Md, United States
Field: Agricultural and Biological Sciences
Document type: preprint
Year: 2018
Title: Inferring Genetic Interactions from Comparative Fitness Data
Authors: last_name: Crona
first_name: Kristina
name: Kristina Crona
affiliations: label: 1
institution: Department of Mathematics and Statistics, American University
name: Department of Mathematics and Statistics, American University , Washington D.C.
notes: E-mail addresses: kcrona@american.edu, alex@gavruskin.com, deving@american.edu, niko.beerenwinkel@bsse.ethz.ch.
Alphabetic order. These authors contributed equally.
last_name: Gavryushkin
first_name: Alex
name: Alex Gavryushkin
affiliations: label: 2
institution: Department of Biosystems Science and Engineering, ETH Zurich, Basel
country: Switzerland
name: Department of Biosystems Science and Engineering, ETH Zurich, Basel , Switzerland; SIB Swiss Institute of Bioinformatics, Basel, Switzerland
notes: E-mail addresses: kcrona@american.edu, alex@gavruskin.com, deving@american.edu, niko.beerenwinkel@bsse.ethz.ch.
Alphabetic order. These authors contributed equally.
last_name: Greene
first_name: Devin
name: Devin Greene
affiliations: label: 1
institution: Department of Mathematics and Statistics, American University
name: Department of Mathematics and Statistics, American University , Washington D.C.
notes: E-mail addresses: kcrona@american.edu, alex@gavruskin.com, deving@american.edu, niko.beerenwinkel@bsse.ethz.ch.
Alphabetic order. These authors contributed equally.
orcid: http://orcid.org/0000-0002-0573-6119
last_name: Beerenwinkel
first_name: Niko
name: Niko Beerenwinkel
affiliations: label: 2
institution: Department of Biosystems Science and Engineering, ETH Zurich, Basel
country: Switzerland
name: Department of Biosystems Science and Engineering, ETH Zurich, Basel , Switzerland; SIB Swiss Institute of Bioinformatics, Basel, Switzerland
notes: E-mail addresses: kcrona@american.edu, alex@gavruskin.com, deving@american.edu, niko.beerenwinkel@bsse.ethz.ch.
Affiliations: label: 1
institution: Department of Mathematics and Statistics, American University
name: Department of Mathematics and Statistics, American University , Washington D.C.
label: 2
institution: Department of Biosystems Science and Engineering, ETH Zurich, Basel
country: Switzerland
name: Department of Biosystems Science and Engineering, ETH Zurich, Basel , Switzerland; SIB Swiss Institute of Bioinformatics, Basel, Switzerland
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Finding reliable phenotypes and detecting artefacts among in vivo and in vitro assays to characterize the refractory transcriptional activator Sxy (TfoX) in Escherichia coli
Authors: orcid: http://orcid.org/0000-0001-6860-7931
last_name: Alshabib
first_name: Ebtihal Y.
name: Ebtihal Y. Alshabib
affiliations: label: 1
institution: Department of Biology, University of Regina
country: Canada
name: Department of Biology, University of Regina , Regina, Saskatchewan, Canada
last_name: Fitzgerald
first_name: Stephen F.
name: Stephen F. Fitzgerald
affiliations: label: 1
institution: Department of Biology, University of Regina
country: Canada
name: Department of Biology, University of Regina , Regina, Saskatchewan, Canada
notes: Division of Infection and Immunity, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, UK
orcid: http://orcid.org/0000-0001-8781-6958
last_name: Chao
first_name: Tzu-Chiao
name: Tzu-Chiao Chao
affiliations: label: 1
institution: Department of Biology, University of Regina
country: Canada
name: Department of Biology, University of Regina , Regina, Saskatchewan, Canada
last_name: Cameron
first_name: Rhiannon C.
name: Rhiannon C. Cameron
affiliations: label: 1
institution: Department of Biology, University of Regina
country: Canada
name: Department of Biology, University of Regina , Regina, Saskatchewan, Canada
last_name: Redfield
first_name: Rosemary J.
name: Rosemary J. Redfield
affiliations: label: 2
institution: Department of Zoology, University of British Columbia
country: Canada
name: Department of Zoology, University of British Columbia , Vancouver, British Columbia, Canada
orcid: http://orcid.org/0000-0002-6576-2407
last_name: Sinha
first_name: Sunita
name: Sunita Sinha
affiliations: label: 2
institution: Department of Zoology, University of British Columbia
country: Canada
name: Department of Zoology, University of British Columbia , Vancouver, British Columbia, Canada
orcid: http://orcid.org/0000-0003-1560-8572
last_name: Cameron
first_name: Andrew D.S.
name: Andrew D.S. Cameron
corresponding: yes
affiliations: label: 1
institution: Department of Biology, University of Regina
country: Canada
name: Department of Biology, University of Regina , Regina, Saskatchewan, Canada
Affiliations: label: 1
institution: Department of Biology, University of Regina
country: Canada
name: Department of Biology, University of Regina , Regina, Saskatchewan, Canada
label: 2
institution: Department of Zoology, University of British Columbia
country: Canada
name: Department of Zoology, University of British Columbia , Vancouver, British Columbia, Canada
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Faster than the brain’s speed of light: Retinocortical interactions differ in high frequency activity when processing darks and lights
Authors: last_name: Westner
first_name: Britta U.
name: Britta U. Westner
corresponding: yes
affiliations: label: 1
institution: Department of Psychology, University of Konstanz
country: Germany
name: Department of Psychology, University of Konstanz , Konstanz, Germany
label: 2
institution: Center of Functionally Integrative Neuroscience, Department of Clinical Medicine, Aarhus University
country: Denmark
name: Center of Functionally Integrative Neuroscience, Department of Clinical Medicine, Aarhus University , Aarhus, Denmark
orcid: http://orcid.org/0000-0002-1699-7218
last_name: Dalal
first_name: Sarang S.
name: Sarang S. Dalal
affiliations: label: 2
institution: Center of Functionally Integrative Neuroscience, Department of Clinical Medicine, Aarhus University
country: Denmark
name: Center of Functionally Integrative Neuroscience, Department of Clinical Medicine, Aarhus University , Aarhus, Denmark
Affiliations: label: 1
institution: Department of Psychology, University of Konstanz
country: Germany
name: Department of Psychology, University of Konstanz , Konstanz, Germany
label: 2
institution: Center of Functionally Integrative Neuroscience, Department of Clinical Medicine, Aarhus University
country: Denmark
name: Center of Functionally Integrative Neuroscience, Department of Clinical Medicine, Aarhus University , Aarhus, Denmark
Field: Neuroscience
Document type: preprint
Year: 2017
Title: A comparative study of endoderm differentiation in humans and chimpanzees
Authors: last_name: Blake
first_name: Lauren E.
name: Lauren E. Blake
affiliations: label: 1
institution: University of Chicago, Department of Human Genetics
name: University of Chicago, Department of Human Genetics , Chicago, IL
notes: Authors contributed equally to this work.
last_name: Thomas
first_name: Samantha M.
name: Samantha M. Thomas
affiliations: label: 1
institution: University of Chicago, Department of Human Genetics
name: University of Chicago, Department of Human Genetics , Chicago, IL
notes: Authors contributed equally to this work.
last_name: Blischak
first_name: John D.
name: John D. Blischak
affiliations: label: 1
institution: University of Chicago, Department of Human Genetics
name: University of Chicago, Department of Human Genetics , Chicago, IL
last_name: Hsiao
first_name: Chiaowen Joyce
name: Chiaowen Joyce Hsiao
affiliations: label: 1
institution: University of Chicago, Department of Human Genetics
name: University of Chicago, Department of Human Genetics , Chicago, IL
last_name: Chavarria
first_name: Claudia
name: Claudia Chavarria
affiliations: label: 1
institution: University of Chicago, Department of Human Genetics
name: University of Chicago, Department of Human Genetics , Chicago, IL
last_name: Myrthil
first_name: Marsha
name: Marsha Myrthil
affiliations: label: 1
institution: University of Chicago, Department of Human Genetics
name: University of Chicago, Department of Human Genetics , Chicago, IL
last_name: Gilad
first_name: Yoav
name: Yoav Gilad
corresponding: yes
affiliations: label: 1
institution: University of Chicago, Department of Human Genetics
name: University of Chicago, Department of Human Genetics , Chicago, IL
label: 2
institution: University of Chicago, Department of Medicine
name: University of Chicago, Department of Medicine , Chicago, IL
last_name: Pavlovic
first_name: Bryan J.
name: Bryan J. Pavlovic
affiliations: label: 1
institution: University of Chicago, Department of Human Genetics
name: University of Chicago, Department of Human Genetics , Chicago, IL
Affiliations: label: 1
institution: University of Chicago, Department of Human Genetics
name: University of Chicago, Department of Human Genetics , Chicago, IL
label: 2
institution: University of Chicago, Department of Medicine
name: University of Chicago, Department of Medicine , Chicago, IL
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2017
Title: Zelda potentiates transcription factor binding to zygotic enhancers by increasing local chromatin accessibility during early Drosophila melanogaster embryogenesis
Authors: last_name: Li
first_name: Xiao-Yong
name: Xiao-Yong Li
affiliations: label: 1
institution: Howard Hughes Medical Institute, University of California
name: Howard Hughes Medical Institute, University of California , Berkeley, CA
orcid: http://orcid.org/0000-0002-7528-738X
last_name: Eisen
first_name: Michael B.
name: Michael B. Eisen
corresponding: yes
affiliations: label: 1
institution: Howard Hughes Medical Institute, University of California
name: Howard Hughes Medical Institute, University of California , Berkeley, CA
label: 2
institution: Department of Molecular and Cell Biology, University of California
name: Department of Molecular and Cell Biology, University of California , Berkeley, CA
label: 3
institution: Department of Integrative Biology, University of California
name: Department of Integrative Biology, University of California , Berkeley, CA
Affiliations: label: 1
institution: Howard Hughes Medical Institute, University of California
name: Howard Hughes Medical Institute, University of California , Berkeley, CA
label: 2
institution: Department of Molecular and Cell Biology, University of California
name: Department of Molecular and Cell Biology, University of California , Berkeley, CA
label: 3
institution: Department of Integrative Biology, University of California
name: Department of Integrative Biology, University of California , Berkeley, CA
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2018
Title: Changes in brain morphology and working memory capacity over childhood
Authors: last_name: Bathelt
first_name: Joe
name: Joe Bathelt
affiliations: label: a
institution: MRC Cognition and Brain Sciences Unit
name: MRC Cognition and Brain Sciences Unit 15 Chaucer Road Cambridge CB2 7EF
last_name: Gathercole
first_name: Susan
name: Susan Gathercole
affiliations: label: a
institution: MRC Cognition and Brain Sciences Unit
name: MRC Cognition and Brain Sciences Unit 15 Chaucer Road Cambridge CB2 7EF
last_name: Johnson
first_name: Amy
name: Amy Johnson
affiliations: label: a
institution: MRC Cognition and Brain Sciences Unit
name: MRC Cognition and Brain Sciences Unit 15 Chaucer Road Cambridge CB2 7EF
last_name: Astle
first_name: Duncan
name: Duncan Astle
affiliations: label: a
institution: MRC Cognition and Brain Sciences Unit
name: MRC Cognition and Brain Sciences Unit 15 Chaucer Road Cambridge CB2 7EF
Affiliations: label: a
institution: MRC Cognition and Brain Sciences Unit
name: MRC Cognition and Brain Sciences Unit 15 Chaucer Road Cambridge CB2 7EF
Field: Medicine
Document type: preprint
Year: 2016
Title: Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation, and homozygous truncating mutations
Authors: last_name: Doran
first_name: Anthony G.
name: Anthony G. Doran
corresponding: yes
affiliations: label: 1
institution: Wellcome Trust Sanger Institute
country: UK
name: Wellcome Trust Sanger Institute , Hinxton, Cambridge, CB10 1HH, UK
last_name: Wong
first_name: Kim
name: Kim Wong
affiliations: label: 1
institution: Wellcome Trust Sanger Institute
country: UK
name: Wellcome Trust Sanger Institute , Hinxton, Cambridge, CB10 1HH, UK
last_name: Flint
first_name: Jonathan
name: Jonathan Flint
affiliations: label: 2
institution: The Wellcome Trust Centre for Human Genetics
country: UK
name: The Wellcome Trust Centre for Human Genetics , Roosevelt Drive, Oxford OX3 7BN, UK
last_name: Adams
first_name: David J.
name: David J. Adams
affiliations: label: 1
institution: Wellcome Trust Sanger Institute
country: UK
name: Wellcome Trust Sanger Institute , Hinxton, Cambridge, CB10 1HH, UK
last_name: Hunter
first_name: Kent W.
name: Kent W. Hunter
corresponding: yes
affiliations: label: 3
institution: Laboratory of Cancer Biology and Genetics
name: Laboratory of Cancer Biology and Genetics , NCI, NIH
last_name: Keane
first_name: Thomas M.
name: Thomas M. Keane
corresponding: yes
affiliations: label: 1
institution: Wellcome Trust Sanger Institute
country: UK
name: Wellcome Trust Sanger Institute , Hinxton, Cambridge, CB10 1HH, UK
Affiliations: label: 1
institution: Wellcome Trust Sanger Institute
country: UK
name: Wellcome Trust Sanger Institute , Hinxton, Cambridge, CB10 1HH, UK
label: 2
institution: The Wellcome Trust Centre for Human Genetics
country: UK
name: The Wellcome Trust Centre for Human Genetics , Roosevelt Drive, Oxford OX3 7BN, UK
label: 3
institution: Laboratory of Cancer Biology and Genetics
name: Laboratory of Cancer Biology and Genetics , NCI, NIH
Field: Biochemistry, Genetics and Molecular Biology
Document type: preprint
Year: 2016
Title: Origin and recent expansion of an endogenous gammaretroviral lineage in canids
Authors: last_name: Halo
first_name: Julia V.
name: Julia V. Halo
corresponding: yes
affiliations: label: 1
institution: Bowling Green State University, Department of Biological Sciences
name: Bowling Green State University, Department of Biological Sciences , Bowling Green, OH 43403
last_name: Pendleton
first_name: Amanda L.
name: Amanda L. Pendleton
affiliations: label: 2
institution: University of Michigan Medical School, Department of Human Genetics
name: University of Michigan Medical School, Department of Human Genetics , Ann Arbor, MI, 48109
last_name: Jarosz
first_name: Abigail S.
name: Abigail S. Jarosz
affiliations: label: 1
institution: Bowling Green State University, Department of Biological Sciences
name: Bowling Green State University, Department of Biological Sciences , Bowling Green, OH 43403
last_name: Gifford
first_name: Robert J.
name: Robert J. Gifford
affiliations: label: 3
institution: Centre for Virus Research, University of Glasgow
name: Centre for Virus Research, University of Glasgow , Glasgow, G12 8QQ Scotland
last_name: Day
first_name: Malika L.
name: Malika L. Day
affiliations: label: 1
institution: Bowling Green State University, Department of Biological Sciences
name: Bowling Green State University, Department of Biological Sciences , Bowling Green, OH 43403
last_name: Kidd
first_name: Jeffrey M.
name: Jeffrey M. Kidd
affiliations: label: 2
institution: University of Michigan Medical School, Department of Human Genetics
name: University of Michigan Medical School, Department of Human Genetics , Ann Arbor, MI, 48109
label: 4
institution: University of Michigan Medical School, Department of Computational Medicine and Bioinformatics
name: University of Michigan Medical School, Department of Computational Medicine and Bioinformatics , 100 Washtenaw Ave., Ann Arbor, MI, 48109
Affiliations: label: 1
institution: Bowling Green State University, Department of Biological Sciences
name: Bowling Green State University, Department of Biological Sciences , Bowling Green, OH 43403
label: 2
institution: University of Michigan Medical School, Department of Human Genetics
name: University of Michigan Medical School, Department of Human Genetics , Ann Arbor, MI, 48109
label: 3
institution: Centre for Virus Research, University of Glasgow
name: Centre for Virus Research, University of Glasgow , Glasgow, G12 8QQ Scotland
label: 4
institution: University of Michigan Medical School, Department of Computational Medicine and Bioinformatics
name: University of Michigan Medical School, Department of Computational Medicine and Bioinformatics , 100 Washtenaw Ave., Ann Arbor, MI, 48109
Field: Medicine
Document type: preprint
Year: 2018