diff --git "a/CrossNER_science/test.json" "b/CrossNER_science/test.json" new file mode 100644--- /dev/null +++ "b/CrossNER_science/test.json" @@ -0,0 +1 @@ +[{"sentence": "ESA 's Advanced Concepts Team also demonstrated theoretically that a deflection of 99942 Apophis could be achieved by sending a spacecraft weighing less than a tonne to impact against the asteroid .", "entities": [{"name": "ESA", "type": "organization", "pos": [0, 3]}, {"name": "Advanced Concepts Team", "type": "organization", "pos": [7, 29]}, {"name": "99942 Apophis", "type": "astronomical object", "pos": [83, 96]}]}, {"sentence": "Studies in human neutrophils first detected a plasma membrane -localized site which reversibly bound 5-oxo-ETE and had the attributes of a Gi alpha subunit -linked G protein-coupled receptor based on the ability of 5-oxo-ETE to activate this class of membrane G proteins by a pertussis toxin -sensitive mechanism .", "entities": [{"name": "neutrophils", "type": "else", "pos": [17, 28]}, 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190]}]}, {"sentence": "Under typical dark sky conditions Uranus ( magnitude + 5.8 ) can be seen as well with averted vision , as can the asteroid 4 Vesta at its brighter oppositions .", "entities": [{"name": "Uranus", "type": "astronomical object", "pos": [34, 40]}, {"name": "4 Vesta", "type": "astronomical object", "pos": [123, 130]}]}, {"sentence": "This methylation causes other factors like Histone deacetylase ( HDACs ) to bind to the chromosome and propagate heterochromatin formation , even into active gene regions .", "entities": [{"name": "methylation", "type": "else", "pos": [5, 16]}, {"name": "Histone deacetylase", "type": "enzyme", "pos": [43, 62]}, {"name": "HDACs", "type": "enzyme", "pos": [65, 70]}, {"name": "chromosome", "type": "else", "pos": [88, 98]}, {"name": "heterochromatin formation", "type": "else", "pos": [113, 138]}]}, {"sentence": "The 2nd group of anions consist of Chloride , Bromide , Iodide , Nitrate .", "entities": [{"name": "Chloride", "type": "chemical compound", "pos": [35, 43]}, {"name": "Bromide", "type": "chemical compound", "pos": [46, 53]}, {"name": "Iodide", "type": "chemical compound", "pos": [56, 62]}, {"name": "Nitrate", "type": "chemical compound", "pos": [65, 72]}]}, {"sentence": "In 1987 , he discovered the DNA sequence of CRISPR ,", "entities": [{"name": "DNA", "type": "else", "pos": [28, 31]}, {"name": "CRISPR", "type": "else", "pos": [44, 50]}]}, {"sentence": "It works as a transmitter from and to the tight junction , because of its association with signaling molecules ( Phosphoinositide 3-kinase , Protein kinase C , YES , Protein phosphatase 2 , 1 ) .", "entities": [{"name": "Phosphoinositide 3-kinase", "type": "enzyme", "pos": [113, 138]}, {"name": "Protein kinase C", "type": "enzyme", "pos": [141, 157]}, {"name": "YES", "type": "enzyme", "pos": [160, 163]}, {"name": "Protein phosphatase 2 , 1", "type": "enzyme", "pos": [166, 191]}]}, {"sentence": "Other enzymes such as ( Transglutaminase ) control chromatin remodeling through proteins such as sirtuin1 ( SIRT1 ) .", "entities": [{"name": "Transglutaminase", "type": "enzyme", "pos": [24, 40]}, {"name": "chromatin", "type": "else", "pos": [51, 60]}, {"name": "sirtuin1", "type": "protein", "pos": [97, 105]}, {"name": "SIRT1", "type": "protein", "pos": [108, 113]}]}, {"sentence": "However , various histone modifications are placed by epigenetic modifiers such as DNA methyltransferase in neurons and these marks regulate gene expression throughout the life span of the neuron .", "entities": [{"name": "epigenetic modifiers", "type": "else", "pos": [54, 74]}, {"name": "DNA methyltransferase", "type": "protein", "pos": [83, 104]}, {"name": "gene expression", "type": "else", "pos": [141, 156]}, {"name": "neuron", "type": "else", "pos": [189, 195]}]}, {"sentence": "Juno can reach + 7.5 at a favourable opposition , which is brighter than Neptune or Titan , and is the reason for it being discovered before the larger asteroids 10 Hygiea , 52 Europa , 511 Davida , and 704 Interamnia .", "entities": [{"name": "Juno", "type": "astronomical object", "pos": [0, 4]}, {"name": "Neptune", "type": "astronomical object", "pos": [73, 80]}, {"name": "Titan", "type": "astronomical object", "pos": [84, 89]}, {"name": "10 Hygiea", "type": "astronomical object", "pos": [162, 171]}, {"name": "52 Europa", "type": "astronomical object", "pos": [174, 183]}, {"name": "511 Davida", "type": "astronomical object", "pos": [186, 196]}, {"name": "704 Interamnia", "type": "astronomical object", "pos": [203, 217]}]}, {"sentence": "She also played at 1986 , 1989 , 1993 , 1995 AFC Championship , 1990 , Football at the 1994 Asian Games .", "entities": [{"name": "AFC Championship", "type": "event", "pos": [45, 61]}, {"name": "Football", "type": "else", "pos": [71, 79]}, {"name": "Asian Games", "type": "event", "pos": [92, 103]}]}, {"sentence": "The biological effects of estrogens ( and xenoestrogens ) are mediated through the Estrogen receptor .", "entities": [{"name": "estrogens", "type": "chemical compound", "pos": [26, 35]}, {"name": "xenoestrogens", "type": "chemical compound", "pos": [42, 55]}, {"name": "Estrogen receptor", "type": "protein", "pos": [83, 100]}]}, {"sentence": "Pauli spent a year at the University of Göttingen as the assistant to Max Born , and the following year at the Institute for Theoretical Physics in University of Copenhagen , which later became the Niels Bohr Institute in 1965 .", "entities": [{"name": "Pauli", "type": "scientist", "pos": [0, 5]}, {"name": "University of Göttingen", "type": "university", "pos": [26, 49]}, {"name": "Max Born", "type": "scientist", "pos": [70, 78]}, {"name": "Institute for Theoretical Physics", "type": "organization", "pos": [111, 144]}, {"name": "University of Copenhagen", "type": "university", "pos": [148, 172]}, {"name": "Niels Bohr Institute", "type": "organization", "pos": [198, 218]}]}, {"sentence": "Ellen DeGeneres also became the first actress to win an award for voice acting , and the third person to do so after Robin Williams and Scott Weinger in 1992 , both for Aladdin .", "entities": [{"name": "Ellen DeGeneres", "type": "person", "pos": [0, 15]}, {"name": "Robin Williams", "type": "person", "pos": [117, 131]}, {"name": "Scott Weinger", "type": "person", "pos": [136, 149]}, {"name": "Aladdin", "type": "else", "pos": [169, 176]}]}, {"sentence": "Assisted by activists from Southern Christian Leadership Conference , Congress of Racial Equality , SNCC , and the NAACP , African Americans and supporters took a stand to fight segregation through nonviolence .", "entities": [{"name": "Southern Christian Leadership Conference", "type": "organization", "pos": [27, 67]}, {"name": "Congress of Racial Equality", "type": "organization", "pos": [70, 97]}, {"name": "SNCC", "type": "organization", "pos": [100, 104]}, {"name": "NAACP", "type": "organization", "pos": [115, 120]}]}, {"sentence": "DSBs can be artificially induced using genome editing technologies such as CRISPR or TALEN .", "entities": [{"name": "DSBs", "type": "else", "pos": [0, 4]}, {"name": "CRISPR", "type": "else", "pos": [75, 81]}, {"name": "TALEN", "type": "else", "pos": [85, 90]}]}, {"sentence": "Beginning in 1882 , data for Mercury , Uranus , and Neptune was added to the first part , with eclipses , occultations , and other phenomena forming a separate third part .", "entities": [{"name": "Mercury", "type": "astronomical object", "pos": [29, 36]}, {"name": "Uranus", "type": "astronomical object", "pos": [39, 45]}, {"name": "Neptune", "type": "astronomical object", "pos": [52, 59]}]}, {"sentence": "In 1966 Maiman received the American Physical Society ' s Oliver E. Buckley Condensed Matter Prize and the Hertz Foundation Award for distinguished contribution in the field of science ,", "entities": [{"name": "Maiman", "type": "scientist", "pos": [8, 14]}, {"name": "American Physical Society", "type": "organization", "pos": [28, 53]}, {"name": "Oliver E. Buckley Condensed Matter Prize", "type": "award", "pos": [58, 98]}, {"name": "Hertz Foundation Award", "type": "award", "pos": [107, 129]}]}, {"sentence": "In 1968 and 1970 , Roger Penrose , Stephen Hawking , and George F. R. Ellis published papers where they showed that mathematical singularities were an inevitable initial condition of relativistic models of the Big Bang .", "entities": [{"name": "Roger Penrose", "type": "scientist", "pos": [19, 32]}, {"name": "Stephen Hawking", "type": "scientist", "pos": [35, 50]}, {"name": "George F. R. 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Mulliken and others noted that the consequence of Heisenberg 's relation was that the electron , as a wave packet , could not be considered to have an exact location in its orbital .", "entities": [{"name": "chemistry", "type": "discipline", "pos": [3, 12]}, {"name": "Erwin Schrödinger", "type": "scientist", "pos": [15, 32]}, {"name": "Linus Pauling", "type": "scientist", "pos": [35, 48]}, {"name": "Robert S. Mulliken", "type": "scientist", "pos": [51, 69]}, {"name": "Heisenberg 's relation", "type": "theory", "pos": [111, 133]}]}, {"sentence": "After 3 years at King 's College London ( contemporary with Rosalind Franklin ) she moved to the University of Sheffield in 1955 as a demonstrator in the Biochemistry department ( now Molecular Biology and Biotechnology ) , obtaining an MRC grant to study the iron storage protein Ferritin , publishing preliminary X-ray diffraction data in the 1st volume of the Journal of Molecular Biology in 1959 .", "entities": [{"name": "King 's College London", "type": "university", "pos": [17, 39]}, {"name": "Rosalind Franklin", "type": "scientist", "pos": [60, 77]}, {"name": "University of Sheffield", "type": "university", "pos": [97, 120]}, {"name": "Biochemistry", "type": "discipline", "pos": [154, 166]}, {"name": "Molecular Biology", "type": "discipline", "pos": [184, 201]}, {"name": "Biotechnology", "type": "discipline", "pos": [206, 219]}, {"name": "MRC", "type": "organization", "pos": [237, 240]}, {"name": "Ferritin", "type": "protein", "pos": [281, 289]}, {"name": "X-ray", "type": "else", "pos": [315, 320]}, {"name": "Journal of Molecular Biology", "type": "academic journal", "pos": [363, 391]}]}, {"sentence": "Several academic bodies exist to support behavior genetic research , including the Behavior Genetics Association , the International Society for Twin Studies , and the International Behavioural and Neural Genetics Society .", "entities": [{"name": "behavior genetic", "type": "discipline", "pos": [41, 57]}, {"name": "Behavior Genetics Association", "type": "organization", "pos": [83, 112]}, {"name": "International Society for Twin Studies", "type": "organization", "pos": [119, 157]}, {"name": "International Behavioural and Neural Genetics Society", "type": "organization", "pos": [168, 221]}]}, {"sentence": "García studied law , first at the Pontifical Catholic University of Peru -although the official records of his tenure in this university were never found- and later earning a law degree from the National University of San Marcos in 1971 .", "entities": [{"name": "García", "type": "person", "pos": [0, 6]}, {"name": "Pontifical Catholic University of Peru", "type": "university", "pos": [34, 72]}, {"name": "National University of San Marcos", "type": "university", "pos": [195, 228]}]}, {"sentence": "The claims were initially submitted to the International Journal of Astrobiology , which rejected the paper , but were eventually published by the fringe Journal of Cosmology .", "entities": [{"name": "International Journal of Astrobiology", "type": "academic journal", "pos": [43, 80]}, {"name": "Journal of Cosmology", "type": "academic journal", "pos": [154, 174]}]}, {"sentence": "Another absolute instrumental approach was also possible with the development of light scattering theory by Einstein , Raman , Peter Debye , Bruno H. Zimm , and others .", "entities": [{"name": "light scattering theory", "type": "theory", "pos": [81, 104]}, {"name": "Einstein", "type": "scientist", "pos": [108, 116]}, {"name": "Raman", "type": "scientist", "pos": [119, 124]}, {"name": "Peter Debye", "type": "scientist", "pos": [127, 138]}, {"name": "Bruno H. Zimm", "type": "scientist", "pos": [141, 154]}]}, {"sentence": "The invitees included Walther Bothe , Siegfried Flügge , Hans Geiger , Otto Hahn , Paul Harteck , Gerhard Hoffmann , Josef Mattauch , and Georg Stetter .", "entities": [{"name": "Walther Bothe", "type": "scientist", "pos": [22, 35]}, {"name": "Siegfried Flügge", "type": "scientist", "pos": [38, 54]}, {"name": "Hans Geiger", "type": "scientist", "pos": [57, 68]}, {"name": "Otto Hahn", "type": "scientist", "pos": [71, 80]}, {"name": "Paul Harteck", "type": "scientist", "pos": [83, 95]}, {"name": "Gerhard Hoffmann", "type": "scientist", "pos": [98, 114]}, {"name": "Josef Mattauch", "type": "scientist", "pos": [117, 131]}, {"name": "Georg Stetter", "type": "scientist", "pos": [138, 151]}]}, {"sentence": "She discovered mutations in the genes encoding the Retinoic acid receptor , the active derivative of vitamin A , in liver cancer and some types of leukemia and dissected the molecular mechanisms underlying their role in oncogenesis and treatment sensitivity .", "entities": [{"name": "Retinoic acid receptor", "type": "protein", "pos": [51, 73]}, {"name": "vitamin A", "type": "chemical compound", "pos": [101, 110]}, {"name": "liver cancer", "type": "else", "pos": [116, 128]}, {"name": "leukemia", "type": "else", "pos": [147, 155]}, {"name": "oncogenesis", "type": "else", "pos": [220, 231]}]}, {"sentence": "This was shown by Artur Avila and Svetlana Jitomirskaya solving the by-then famous ten martini problem with respect to the parameters ) .", "entities": [{"name": "Artur Avila", "type": "scientist", "pos": [18, 29]}, {"name": "Svetlana Jitomirskaya", "type": "scientist", "pos": [34, 55]}, {"name": "ten martini problem", "type": "else", "pos": [83, 102]}]}, {"sentence": "Uranus and 4 Vesta had most probably been seen but could not be recognized as planets because they appear so faint even at maximum brightness ; Uranus ' magnitude varies from + 5.3supm / sup to + 5.9supm / sup , and Vesta 's from + 5.2supm / sup to + 8.5supm / sup ( so that it is only visible near its opposition dates ) .", "entities": [{"name": "Uranus", "type": "astronomical object", "pos": [0, 6]}, {"name": "4 Vesta", "type": "astronomical object", "pos": [11, 18]}, {"name": "Uranus", "type": "astronomical object", "pos": [144, 150]}, {"name": "Vesta", "type": "astronomical object", "pos": [216, 221]}]}, {"sentence": "While he was there , he was among a group of physicists including Bruno Zumino , Harry Lehmann , Wolfhart Zimmermann , Kurt Symanzik , Gerhard Lüders , Reinhard Oehme , Vladimir Glaser , and Carl Friedrich von Weizsäcker .", "entities": [{"name": "Bruno Zumino", "type": "scientist", "pos": [66, 78]}, {"name": "Harry Lehmann", "type": "scientist", "pos": [81, 94]}, {"name": "Wolfhart Zimmermann", "type": "scientist", "pos": [97, 116]}, {"name": "Kurt Symanzik", "type": "scientist", "pos": [119, 132]}, {"name": "Gerhard Lüders", "type": "scientist", "pos": [135, 149]}, {"name": "Reinhard Oehme", "type": "scientist", "pos": [152, 166]}, {"name": "Vladimir Glaser", "type": "scientist", "pos": [169, 184]}, {"name": "Carl Friedrich von Weizsäcker", "type": "scientist", "pos": [191, 220]}]}, {"sentence": "He served on the editorial boards of several scientific journals , including NeuroImage , European Journal of Neuroscience , European Journal of Physiology , NeuroReport , Physiological Reviews , Journal of Motor Behavior , Perception , Cognition , Behavioural Brain Research , and Experimental Brain Research .", "entities": [{"name": "NeuroImage", "type": "academic journal", "pos": [77, 87]}, {"name": "European Journal of Neuroscience", "type": "academic journal", "pos": [90, 122]}, {"name": "European Journal of Physiology", "type": "academic journal", "pos": [125, 155]}, {"name": "NeuroReport", "type": "academic journal", "pos": [158, 169]}, {"name": "Physiological Reviews", "type": "academic journal", "pos": [172, 193]}, {"name": "Journal of Motor Behavior", "type": "academic journal", "pos": [196, 221]}, {"name": "Perception", "type": "academic journal", "pos": [224, 234]}, {"name": "Cognition", "type": "academic journal", "pos": [237, 246]}, {"name": "Behavioural Brain Research", "type": "academic journal", "pos": [249, 275]}, {"name": "Experimental Brain Research", "type": "academic journal", "pos": [282, 309]}]}, {"sentence": "Amdahl was named an IBM Fellow in 1965 , became a member of the National Academy of Engineering in 1967 and was recognized as the Centennial Alumnus of South Dakota State University in 1986 .", "entities": [{"name": "Amdahl", "type": "person", "pos": [0, 6]}, {"name": "IBM Fellow", "type": "else", "pos": [20, 30]}, {"name": "National Academy of Engineering", "type": "organization", "pos": [64, 95]}, {"name": "South Dakota State University", "type": "university", "pos": [152, 181]}]}, {"sentence": "Additionally , Histone Deacetylase A6 and A19 activity contributes to silencing of Cytochrome P450 707A and activation of NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4 , 9 .", "entities": [{"name": "Histone Deacetylase A6", "type": "enzyme", "pos": [15, 37]}, {"name": "A19", "type": "enzyme", "pos": [42, 45]}, {"name": "Cytochrome P450 707A", "type": "protein", "pos": [83, 103]}, {"name": "NINE-CIS-EPOXYCAROTENOID DIOXYGENASE", "type": "enzyme", "pos": [122, 158]}]}, {"sentence": "Mikhail Lomonosov ( 1711-1765 ) had previously expressed similar ideas in 1748 and proved them in experiments ; 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