Материалы:NC 008781

LOCUS NC_008781 4410291 bp DNA circular BCT 11-JAN-2007 DEFINITION Polaromonas naphthalenivorans CJ2, complete genome. ACCESSION NC_008781 VERSION NC_008781.1 GI:121602919 KEYWORDS . SOURCE Polaromonas naphthalenivorans CJ2 ORGANISM Polaromonas naphthalenivorans CJ2 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas. REFERENCE 1 (bases 1 to 4410291) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D.R., Brettin,T., Bruce,D., Han,C., Tapia,R., Brainard,J., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Madsen,E.L. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromosome1 of Polaromonas naphthalenivorans CJ2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4410291) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (10-JAN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4410291) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D.R., Brettin,T., Bruce,D., Han,C., Tapia,R., Brainard,J., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Madsen,E.L. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000529. URL -- http://www.jgi.doe.gov JGI Project ID: 4000361 Source DNA and bacteria available from Eugene L. Madsen (elm3@cornell.edu) Contacts: Eugene L. Madsen (elm3@cornell.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

265115 | 265190 | + | 76 | 121602919 | Pnap_R0002 | - | 11 Arg tRNA
|

343179 | 343255 | + | 77 | 121602919 | Pnap_R0003 | - | 16 Met tRNA
|

425434 | 426956 | + | 1523 | 121602919 | Pnap_R0004 | - | 16S ribosomal RNA |

427076 | 427152 | + | 77 | 121602919 | Pnap_R0005 | - | 14 Ile tRNA
|

427181 | 427256 | + | 76 | 121602919 | Pnap_R0006 | - | 02 Ala tRNA
|

427603 | 430484 | + | 2882 | 121602919 | Pnap_R0007 | - | 23S ribosomal RNA |

430649 | 430761 | + | 113 | 121602919 | Pnap_R0008 | - | 5S ribosomal RNA |

759510 | 759585 | + | 76 | 121602919 | Pnap_R0009 | - | 12 Thr tRNA
|

796908 | 796984 | + | 77 | 121602919 | Pnap_R0010 | - | 03 Pro tRNA
|

836741 | 836817 | + | 77 | 121602919 | Pnap_R0011 | - | 11 Arg tRNA
|

907832 | 907906 | - | 75 | 121602919 | Pnap_R0012 | - | 11 Arg tRNA
|

950908 | 950984 | - | 77 | 121602919 | Pnap_R0013 | - | 05 Gln tRNA
|

963115 | 963191 | + | 77 | 121602919 | Pnap_R0014 | - | 16 Met tRNA
|

1021827 | 1021916 | - | 90 | 121602919 | Pnap_R0015 | - | 08 Ser tRNA
|

1131583 | 1131658 | - | 76 | 121602919 | Pnap_R0016 | - | 12 Thr tRNA
|

1162395 | 1162470 | + | 76 | 121602919 | Pnap_R0017 | - | 02 Ala tRNA
|

1162537 | 1162612 | + | 76 | 121602919 | Pnap_R0018 | - | 04 Glu tRNA
|

1162693 | 1162769 | + | 77 | 121602919 | Pnap_R0019 | - | 06 Asp tRNA
|

1162892 | 1162967 | + | 76 | 121602919 | Pnap_R0020 | - | 04 Glu tRNA
|

1163048 | 1163124 | + | 77 | 121602919 | Pnap_R0021 | - | 06 Asp tRNA
|

1512447 | 1512531 | + | 85 | 121602919 | Pnap_R0022 | - | 15 Leu tRNA
|

1721370 | 1721445 | + | 76 | 121602919 | Pnap_R0023 | - | 13 Val tRNA
|

1723499 | 1723574 | + | 76 | 121602919 | Pnap_R0024 | - | 09 His tRNA
|

1762664 | 1762765 | - | 102 | 121602919 | Pnap_R0025 | - | SRP RNA |

1849669 | 1851191 | + | 1523 | 121602919 | Pnap_R0026 | - | 16S ribosomal RNA |

1851311 | 1851387 | + | 77 | 121602919 | Pnap_R0027 | - | 14 Ile tRNA
|

1851416 | 1851491 | + | 76 | 121602919 | Pnap_R0028 | - | 02 Ala tRNA
|

1851838 | 1854719 | + | 2882 | 121602919 | Pnap_R0029 | - | 23S ribosomal RNA |

1854884 | 1854996 | + | 113 | 121602919 | Pnap_R0030 | - | 5S ribosomal RNA |

1976097 | 1976172 | + | 76 | 121602919 | Pnap_R0031 | - | 07 Asn tRNA
|

2031833 | 2031909 | + | 77 | 121602919 | Pnap_R0032 | - | 03 Pro tRNA
|

2031951 | 2032027 | + | 77 | 121602919 | Pnap_R0033 | - | 11 Arg tRNA
|

2152465 | 2152554 | + | 90 | 121602919 | Pnap_R0034 | - | 08 Ser tRNA
|

2173508 | 2173583 | - | 76 | 121602919 | Pnap_R0035 | - | 10 Lys tRNA
|

2173594 | 2173669 | - | 76 | 121602919 | Pnap_R0036 | - | 10 Lys tRNA
|

2426393 | 2426467 | - | 75 | 121602919 | Pnap_R0037 | - | 13 Val tRNA
|

2577811 | 2577895 | + | 85 | 121602919 | Pnap_R0038 | - | 15 Leu tRNA
|

2673898 | 2673974 | - | 77 | 121602919 | Pnap_R0039 | - | 13 Val tRNA
|

2785718 | 2785791 | + | 74 | 121602919 | Pnap_R0040 | - | 01 Gly tRNA
|

2930517 | 2930900 | - | 384 | 121602919 | Pnap_R0041 | - | tmRNA |

2988726 | 2988802 | - | 77 | 121602919 | Pnap_R0042 | - | 03 Pro tRNA
|

3039526 | 3039618 | - | 93 | 121602919 | Pnap_R0043 | - | 08 Ser tRNA
|

3112867 | 3112953 | - | 87 | 121602919 | Pnap_R0044 | - | 15 Leu tRNA
|

3113043 | 3113116 | - | 74 | 121602919 | Pnap_R0045 | - | 19 Cys tRNA
|

3113177 | 3113252 | - | 76 | 121602919 | Pnap_R0046 | - | 01 Gly tRNA
|

3113334 | 3113407 | - | 74 | 121602919 | Pnap_R0047 | - | 19 Cys tRNA
|

3113467 | 3113542 | - | 76 | 121602919 | Pnap_R0048 | - | 01 Gly tRNA
|

3119726 | 3119812 | - | 87 | 121602919 | Pnap_R0049 | - | 15 Leu tRNA
|

3371931 | 3372015 | + | 85 | 121602919 | Pnap_R0050 | - | 15 Leu tRNA
|

3531928 | 3532015 | - | 88 | 121602919 | Pnap_R0051 | - | 08 Ser tRNA
|

3570807 | 3570883 | + | 77 | 121602919 | Pnap_R0052 | - | 16 Met tRNA
|

3654548 | 3654812 | - | 265 | 121602919 | Pnap_R0053 | - | RNA component of RNaseP |

3860274 | 3860349 | - | 76 | 121602919 | Pnap_R0054 | - | 17 Phe tRNA
|

3881888 | 3881963 | - | 76 | 121602919 | Pnap_R0055 | - | 20 Trp tRNA
|

3883254 | 3883328 | - | 75 | 121602919 | Pnap_R0056 | - | 12 Thr tRNA
|

3883400 | 3883473 | - | 74 | 121602919 | Pnap_R0057 | - | 01 Gly tRNA
|

3883556 | 3883641 | - | 86 | 121602919 | Pnap_R0058 | - | 18 Tyr tRNA
|