Материалы:NC 009381

LOCUS NC_009381 4517345 bp DNA circular BCT 08-AUG-2007 DEFINITION Yersinia pestis Pestoides F, complete genome. ACCESSION NC_009381 VERSION NC_009381.1 GI:145597324 KEYWORDS . SOURCE Yersinia pestis Pestoides F ORGANISM Yersinia pestis Pestoides F Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia. REFERENCE 1 (bases 1 to 4517345) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Di Bartolo,G., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Worsham,P., Chu,M., Bearden,S., Garcia,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Yersinia pestis Pestoides F JOURNAL Unpublished REFERENCE 2 (bases 1 to 4517345) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-APR-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4517345) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Worsham,P., Chu,M., Bearden,S., Garcia,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000668. URL -- http://www.jgi.doe.gov JGI Project ID: 2773191 Source DNA and bacteria available from Emilio Garcia (garcia12@llnl.gov) Contacts: Emilio Garcia (garcia12@llnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

172801 | 174355 | + | 1555 | 145597324 | YPDSF_R0001 | - | 16S ribosomal RNA |

174446 | 174522 | + | 77 | 145597324 | YPDSF_R0002 | - | 14 Ile tRNA
|

174574 | 174649 | + | 76 | 145597324 | YPDSF_R0003 | - | 02 Ala tRNA
|

174868 | 177776 | + | 2909 | 145597324 | YPDSF_R0004 | - | 23S ribosomal RNA |

177881 | 178006 | + | 126 | 145597324 | YPDSF_R0005 | - | 5S ribosomal RNA |

178015 | 178090 | + | 76 | 145597324 | YPDSF_R0006 | - | 12 Thr tRNA
|

178123 | 178254 | + | 132 | 145597324 | YPDSF_R0005b | - | 5S ribosomal RNA |

393066 | 393440 | + | 375 | 145597324 | YPDSF_R0007 | - | RNA component of RNaseP |

480907 | 480983 | - | 77 | 145597324 | YPDSF_R0008 | - | 16 Met tRNA
|

618483 | 618558 | - | 76 | 145597324 | YPDSF_R0010 | - | 17 Phe tRNA
|

679058 | 679239 | - | 182 | 145597324 | YPDSF_R0011 | - | 6S RNA |

709698 | 709771 | + | 74 | 145597324 | YPDSF_R0012 | - | 01 Gly tRNA
|

854553 | 854629 | - | 77 | 145597324 | YPDSF_R0013 | - | 13 Val tRNA
|

854689 | 854765 | - | 77 | 145597324 | YPDSF_R0014 | - | 13 Val tRNA
|

1094068 | 1094152 | + | 85 | 145597324 | YPDSF_R0015 | - | 18 Tyr tRNA
|

1226610 | 1226699 | + | 90 | 145597324 | YPDSF_R0016 | - | 08 Ser tRNA
|

1235020 | 1235109 | + | 90 | 145597324 | YPDSF_R0017 | - | 08 Ser tRNA
|

1364837 | 1364912 | + | 76 | 145597324 | YPDSF_R0018 | - | 07 Asn tRNA
|

1420857 | 1420942 | - | 86 | 145597324 | YPDSF_R0019 | - | 15 Leu tRNA
|

1420953 | 1421026 | - | 74 | 145597324 | YPDSF_R0020 | - | 19 Cys tRNA
|

1421079 | 1421154 | - | 76 | 145597324 | YPDSF_R0021 | - | 01 Gly tRNA
|

1427603 | 1427678 | - | 76 | 145597324 | YPDSF_R0022 | - | 10 Lys tRNA
|

1502736 | 1502985 | + | 250 | 145597324 | YPDSF_R0023 | - | SraC_RyeA RNA |

1502780 | 1502875 | - | 96 | 145597324 | YPDSF_R0024 | - | RyeB RNA |

1557478 | 1557553 | + | 76 | 145597324 | YPDSF_R0025 | - | 07 Asn tRNA
|

1568500 | 1568575 | + | 76 | 145597324 | YPDSF_R0026 | - | 07 Asn tRNA
|

1725215 | 1725302 | - | 88 | 145597324 | YPDSF_R0027 | - | 08 Ser tRNA
|

1826356 | 1826432 | - | 77 | 145597324 | YPDSF_R0028 | - | 06 Asp tRNA
|

1833752 | 1833828 | - | 77 | 145597324 | YPDSF_R0029 | - | 06 Asp tRNA
|

1833949 | 1834072 | - | 124 | 145597324 | YPDSF_R0030 | - | 5S ribosomal RNA |

1834177 | 1837085 | - | 2909 | 145597324 | YPDSF_R0031 | - | 23S ribosomal RNA |

1837338 | 1837413 | - | 76 | 145597324 | YPDSF_R0032 | - | 04 Glu tRNA
|

1837547 | 1839092 | - | 1546 | 145597324 | YPDSF_R0033 | - | 16S ribosomal RNA |

1879200 | 1879481 | - | 282 | 145597324 | YPDSF_R0034 | - | regulatory RNA csrB |

1891469 | 1891545 | + | 77 | 145597324 | YPDSF_R0035 | - | 16 Met tRNA
|

1891669 | 1891745 | + | 77 | 145597324 | YPDSF_R0036 | - | 16 Met tRNA
|

1891869 | 1891945 | + | 77 | 145597324 | YPDSF_R0037 | - | 16 Met tRNA
|

2287099 | 2287173 | - | 75 | 145597324 | YPDSF_R0039 | - | 11 Arg tRNA
|

2358409 | 2358484 | - | 76 | 145597324 | YPDSF_R0040 | - | 10 Lys tRNA
|

2358684 | 2358759 | - | 76 | 145597324 | YPDSF_R0041 | - | 13 Val tRNA
|

2358804 | 2358879 | - | 76 | 145597324 | YPDSF_R0042 | - | 13 Val tRNA
|

2358916 | 2358991 | - | 76 | 145597324 | YPDSF_R0043 | - | 13 Val tRNA
|

2360913 | 2360988 | + | 76 | 145597324 | YPDSF_R0044 | - | 02 Ala tRNA
|

2562259 | 2562423 | + | 165 | 145597324 | YPDSF_R0045 | - | tke1 RNA |

2776103 | 2776179 | + | 77 | 145597324 | YPDSF_R0046 | - | 03 Pro tRNA
|

2808298 | 2808373 | - | 76 | 145597324 | YPDSF_R0047 | - | 12 Thr tRNA
|

2808379 | 2808466 | - | 88 | 145597324 | YPDSF_R0048 | - | 08 Ser tRNA
|

2810228 | 2810362 | + | 135 | 145597324 | YPDSF_R0049 | - | antisense RNA affecting ompF expression |

2918258 | 2918327 | - | 70 | 145597324 | YPDSF_R0050 | - | 10 Lys tRNA
|

2918425 | 2918494 | - | 70 | 145597324 | YPDSF_R0051 | - | Xaa tRNA |

2918523 | 2918598 | - | 76 | 145597324 | YPDSF_R0052 | - | 10 Lys tRNA
|

2918626 | 2918701 | - | 76 | 145597324 | YPDSF_R0053 | - | 10 Lys tRNA
|

2946509 | 2946872 | + | 364 | 145597324 | YPDSF_R0054 | - | tmRNA |

2981842 | 2981918 | + | 77 | 145597324 | YPDSF_R0055 | - | 16 Met tRNA
|

2981926 | 2982010 | + | 85 | 145597324 | YPDSF_R0056 | - | 15 Leu tRNA
|

2982040 | 2982114 | + | 75 | 145597324 | YPDSF_R0057 | - | 05 Gln tRNA
|

2982198 | 2982272 | + | 75 | 145597324 | YPDSF_R0058 | - | 05 Gln tRNA
|

2982305 | 2982381 | + | 77 | 145597324 | YPDSF_R0059 | - | 16 Met tRNA
|

2982387 | 2982461 | + | 75 | 145597324 | YPDSF_R0060 | - | 05 Gln tRNA
|

3074560 | 3074636 | - | 77 | 145597324 | YPDSF_R0061 | - | 11 Arg tRNA
|

3144671 | 3144790 | - | 120 | 145597324 | YPDSF_R0062 | - | SRP RNA |

3300770 | 3300904 | - | 135 | 145597324 | YPDSF_R0063 | - | 5S ribosomal RNA |

3301001 | 3303909 | - | 2909 | 145597324 | YPDSF_R0064 | - | 23S ribosomal RNA |

3304162 | 3304237 | - | 76 | 145597324 | YPDSF_R0065 | - | 04 Glu tRNA
|

3304371 | 3305916 | - | 1546 | 145597324 | YPDSF_R0066 | - | 16S ribosomal RNA |

3471164 | 3471256 | + | 93 | 145597324 | YPDSF_R0067 | - | 08 Ser tRNA
|

3471265 | 3471341 | + | 77 | 145597324 | YPDSF_R0068 | - | 11 Arg tRNA
|

3471399 | 3471475 | + | 77 | 145597324 | YPDSF_R0069 | - | 11 Arg tRNA
|

3651513 | 3651599 | + | 87 | 145597324 | YPDSF_R0070 | - | 15 Leu tRNA
|

3702564 | 3702648 | - | 85 | 145597324 | YPDSF_R0071 | - | 15 Leu tRNA
|

3759736 | 3759909 | + | 174 | 145597324 | YPDSF_R0072 | - | SraG RNA |

3865087 | 3865163 | - | 77 | 145597324 | YPDSF_R0073 | - | 03 Pro tRNA
|

3876787 | 3876921 | - | 135 | 145597324 | YPDSF_R0074 | - | 5S ribosomal RNA |

3877018 | 3879926 | - | 2909 | 145597324 | YPDSF_R0075 | - | 23S ribosomal RNA |

3880145 | 3880220 | - | 76 | 145597324 | YPDSF_R0076 | - | 02 Ala tRNA
|

3880272 | 3880348 | - | 77 | 145597324 | YPDSF_R0077 | - | 14 Ile tRNA
|

3880448 | 3881993 | - | 1546 | 145597324 | YPDSF_R0078 | - | 16S ribosomal RNA |

3981278 | 3981354 | - | 77 | 145597324 | YPDSF_R0079 | - | 03 Pro tRNA
|

3981430 | 3981516 | - | 87 | 145597324 | YPDSF_R0080 | - | 15 Leu tRNA
|

3981533 | 3981608 | - | 76 | 145597324 | YPDSF_R0081 | - | 09 His tRNA
|

3981692 | 3981768 | - | 77 | 145597324 | YPDSF_R0082 | - | 11 Arg tRNA
|

4039087 | 4039162 | - | 76 | 145597324 | YPDSF_R0083 | - | 20 Trp tRNA
|

4039171 | 4039247 | - | 77 | 145597324 | YPDSF_R0084 | - | 06 Asp tRNA
|

4039366 | 4039493 | - | 128 | 145597324 | YPDSF_R0085 | - | 5S ribosomal RNA |

4039596 | 4042504 | - | 2909 | 145597324 | YPDSF_R0086 | - | 23S ribosomal RNA |

4042757 | 4042832 | - | 76 | 145597324 | YPDSF_R0087 | - | 04 Glu tRNA
|

4042966 | 4044511 | - | 1546 | 145597324 | YPDSF_R0088 | - | 16S ribosomal RNA |

4080462 | 4080538 | - | 77 | 145597324 | YPDSF_R0090 | - | 16 Met tRNA
|

4080599 | 4080685 | - | 87 | 145597324 | YPDSF_R0091 | - | 15 Leu tRNA
|

4145290 | 4145365 | - | 76 | 145597324 | YPDSF_R0092 | - | 01 Gly tRNA
|

4175258 | 4175333 | + | 76 | 145597324 | YPDSF_R0093 | - | 17 Phe tRNA
|

4279835 | 4279969 | - | 135 | 145597324 | YPDSF_R0094 | - | 5S ribosomal RNA |

4280066 | 4282974 | - | 2909 | 145597324 | YPDSF_R0095 | - | 23S ribosomal RNA |

4283227 | 4283302 | - | 76 | 145597324 | YPDSF_R0096 | - | 04 Glu tRNA
|

4283436 | 4284981 | - | 1546 | 145597324 | YPDSF_R0097 | - | 16S ribosomal RNA |

4314900 | 4314975 | - | 76 | 145597324 | YPDSF_R0098 | - | 12 Thr tRNA
|

4314982 | 4315056 | - | 75 | 145597324 | YPDSF_R0099 | - | 01 Gly tRNA
|

4315206 | 4315290 | - | 85 | 145597324 | YPDSF_R0100 | - | 18 Tyr tRNA
|

4315309 | 4315384 | - | 76 | 145597324 | YPDSF_R0101 | - | 12 Thr tRNA
|

4340523 | 4340613 | - | 91 | 145597324 | YPDSF_R0102 | - | Sec tRNA |

4456008 | 4456262 | - | 255 | 145597324 | YPDSF_R0103 | - | regulatory RNA CsrC |

4457400 | 4457507 | - | 108 | 145597324 | YPDSF_R0104 | - | Spot 42 RNA |

4465985 | 4466119 | - | 135 | 145597324 | YPDSF_R0105 | - | 5S ribosomal RNA |

4466216 | 4469124 | - | 2909 | 145597324 | YPDSF_R0106 | - | 23S ribosomal RNA |

4469377 | 4469452 | - | 76 | 145597324 | YPDSF_R0107 | - | 04 Glu tRNA
|

4469586 | 4471131 | - | 1546 | 145597324 | YPDSF_R0108 | - | 16S ribosomal RNA |