Материалы:NC 009438

LOCUS NC_009438 4659220 bp DNA circular BCT 14-AUG-2007 DEFINITION Shewanella putrefaciens CN-32, complete genome. ACCESSION NC_009438 VERSION NC_009438.1 GI:146291111 KEYWORDS . SOURCE Shewanella putrefaciens CN-32 ORGANISM Shewanella putrefaciens CN-32 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella. REFERENCE 1 (bases 1 to 4659220) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Romine,M.F., Fredrickson,J., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Shewanella putrefaciens CN-32 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4659220) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4659220) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Romine,M.F., Fredrickson,J., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (17-APR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000681. URL -- http://www.jgi.doe.gov JGI Project ID: 3634498 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org) James Tiedje (tiedjej@msu.edu) Jim Fredrickson (Jim.fredrickson@pnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: This genome contains a Tandem repeat. The repeat unit is 552 bps in length. Each copy of the repeat unit differs by 3 SNPs. We have resolved this tandem making the assumption that there are 14 copies. However, it is unresolved on the number of copies. The tandem is located from 4171003-4178703. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

38741 | 40295 | + | 1555 | 146291111 | Sputcn32_R0001 | - | 16S ribosomal RNA |

40660 | 43552 | + | 2893 | 146291111 | Sputcn32_R0002 | - | 23S ribosomal RNA |

43780 | 43900 | + | 121 | 146291111 | Sputcn32_R0003 | - | 5S ribosomal RNA |

43935 | 44011 | + | 77 | 146291111 | Sputcn32_R0004 | - | 06 Asp tRNA
|

373081 | 374635 | + | 1555 | 146291111 | Sputcn32_R0005 | - | 16S ribosomal RNA |

374951 | 377843 | + | 2893 | 146291111 | Sputcn32_R0006 | - | 23S ribosomal RNA |

378071 | 378191 | + | 121 | 146291111 | Sputcn32_R0007 | - | 5S ribosomal RNA |

378226 | 378302 | + | 77 | 146291111 | Sputcn32_R0008 | - | 06 Asp tRNA
|

536866 | 538420 | + | 1555 | 146291111 | Sputcn32_R0009 | - | 16S ribosomal RNA |

538651 | 538727 | + | 77 | 146291111 | Sputcn32_R0010 | - | 14 Ile tRNA
|

538866 | 538941 | + | 76 | 146291111 | Sputcn32_R0011 | - | 02 Ala tRNA
|

539233 | 542125 | + | 2893 | 146291111 | Sputcn32_R0012 | - | 23S ribosomal RNA |

542303 | 542423 | + | 121 | 146291111 | Sputcn32_R0013 | - | 5S ribosomal RNA |

542495 | 542570 | + | 76 | 146291111 | Sputcn32_R0014 | - | 12 Thr tRNA
|

542606 | 542725 | + | 120 | 146291111 | Sputcn32_R0015 | - | 5S ribosomal RNA |

863902 | 863988 | - | 87 | 146291111 | Sputcn32_R0016 | - | 15 Leu tRNA
|

1133871 | 1133957 | - | 87 | 146291111 | Sputcn32_R0018 | - | 15 Leu tRNA
|

1134026 | 1134112 | - | 87 | 146291111 | Sputcn32_R0019 | - | 15 Leu tRNA
|

1134167 | 1134242 | - | 76 | 146291111 | Sputcn32_R0020 | - | 17 Phe tRNA
|

1142071 | 1143625 | + | 1555 | 146291111 | Sputcn32_R0021 | - | 16S ribosomal RNA |

1143941 | 1146833 | + | 2893 | 146291111 | Sputcn32_R0022 | - | 23S ribosomal RNA |

1147017 | 1147136 | + | 120 | 146291111 | Sputcn32_R0023 | - | 5S ribosomal RNA |

1242577 | 1242653 | - | 77 | 146291111 | Sputcn32_R0024 | - | 16 Met tRNA
|

1371225 | 1371577 | - | 353 | 146291111 | Sputcn32_R0025 | - | tmRNA |

1698077 | 1698153 | + | 77 | 146291111 | Sputcn32_R0026 | - | 03 Pro tRNA
|

1698263 | 1698339 | + | 77 | 146291111 | Sputcn32_R0027 | - | 11 Arg tRNA
|

1698349 | 1698424 | + | 76 | 146291111 | Sputcn32_R0028 | - | 09 His tRNA
|

1722162 | 1722278 | + | 117 | 146291111 | Sputcn32_R0029 | - | SRP RNA; RNA component of signal recognition particle |

1832865 | 1832940 | + | 76 | 146291111 | Sputcn32_R0030 | - | 10 Lys tRNA
|

1833000 | 1833075 | + | 76 | 146291111 | Sputcn32_R0031 | - | 10 Lys tRNA
|

1833114 | 1833189 | + | 76 | 146291111 | Sputcn32_R0032 | - | 10 Lys tRNA
|

1833248 | 1833323 | + | 76 | 146291111 | Sputcn32_R0033 | - | 10 Lys tRNA
|

1833380 | 1833455 | + | 76 | 146291111 | Sputcn32_R0034 | - | 10 Lys tRNA
|

1833514 | 1833589 | + | 76 | 146291111 | Sputcn32_R0035 | - | 10 Lys tRNA
|

1858117 | 1858193 | - | 77 | 146291111 | Sputcn32_R0036 | - | 16 Met tRNA
|

1858334 | 1858410 | - | 77 | 146291111 | Sputcn32_R0037 | - | 16 Met tRNA
|

1858551 | 1858627 | - | 77 | 146291111 | Sputcn32_R0038 | - | 16 Met tRNA
|

1858669 | 1858745 | - | 77 | 146291111 | Sputcn32_R0039 | - | 16 Met tRNA
|

1868188 | 1868278 | + | 91 | 146291111 | Sputcn32_R0040 | - | 08 Ser tRNA
|

1868623 | 1868713 | + | 91 | 146291111 | Sputcn32_R0041 | - | 08 Ser tRNA
|

1872487 | 1872562 | + | 76 | 146291111 | Sputcn32_R0042 | - | 01 Gly tRNA
|

1872616 | 1872689 | + | 74 | 146291111 | Sputcn32_R0043 | - | 19 Cys tRNA
|

1872740 | 1872826 | + | 87 | 146291111 | Sputcn32_R0044 | - | 15 Leu tRNA
|

1872957 | 1873043 | + | 87 | 146291111 | Sputcn32_R0045 | - | 15 Leu tRNA
|

2028303 | 2028379 | + | 77 | 146291111 | Sputcn32_R0046 | - | 06 Asp tRNA
|

2028530 | 2028606 | + | 77 | 146291111 | Sputcn32_R0047 | - | 06 Asp tRNA
|

2064592 | 2064679 | + | 88 | 146291111 | Sputcn32_R0048 | - | 08 Ser tRNA
|

2117079 | 2117154 | - | 76 | 146291111 | Sputcn32_R0049 | - | 07 Asn tRNA
|

2117201 | 2117276 | - | 76 | 146291111 | Sputcn32_R0050 | - | 07 Asn tRNA
|

2117320 | 2117395 | - | 76 | 146291111 | Sputcn32_R0051 | - | 07 Asn tRNA
|

2117439 | 2117514 | - | 76 | 146291111 | Sputcn32_R0052 | - | 07 Asn tRNA
|

2117576 | 2117651 | - | 76 | 146291111 | Sputcn32_R0053 | - | 07 Asn tRNA
|

2122983 | 2123067 | - | 85 | 146291111 | Sputcn32_R0054 | - | 18 Tyr tRNA
|

2123170 | 2123254 | - | 85 | 146291111 | Sputcn32_R0055 | - | 18 Tyr tRNA
|

2123310 | 2123394 | - | 85 | 146291111 | Sputcn32_R0056 | - | 18 Tyr tRNA
|

2164552 | 2164627 | + | 76 | 146291111 | Sputcn32_R0057 | - | 01 Gly tRNA
|

2164681 | 2164754 | + | 74 | 146291111 | Sputcn32_R0058 | - | 19 Cys tRNA
|

2164805 | 2164891 | + | 87 | 146291111 | Sputcn32_R0059 | - | 15 Leu tRNA
|

2284957 | 2285047 | - | 91 | 146291111 | Sputcn32_R0060 | - | 08 Ser tRNA
|

2306135 | 2306211 | + | 77 | 146291111 | Sputcn32_R0061 | - | 13 Val tRNA
|

2306261 | 2306337 | + | 77 | 146291111 | Sputcn32_R0062 | - | 13 Val tRNA
|

2642147 | 2642223 | - | 77 | 146291111 | Sputcn32_R0063 | - | 03 Pro tRNA
|

2711347 | 2711467 | - | 121 | 146291111 | Sputcn32_R0064 | - | 5S ribosomal RNA |

2711688 | 2714580 | - | 2893 | 146291111 | Sputcn32_R0065 | - | 23S ribosomal RNA |

2715020 | 2715095 | - | 76 | 146291111 | Sputcn32_R0066 | - | 02 Ala tRNA
|

2715233 | 2715309 | - | 77 | 146291111 | Sputcn32_R0067 | - | 14 Ile tRNA
|

2715541 | 2717095 | - | 1555 | 146291111 | Sputcn32_R0068 | - | 16S ribosomal RNA |

2899667 | 2899742 | - | 76 | 146291111 | Sputcn32_R0069 | - | 04 Glu tRNA
|

2899843 | 2899918 | - | 76 | 146291111 | Sputcn32_R0070 | - | 04 Glu tRNA
|

2900154 | 2900229 | - | 76 | 146291111 | Sputcn32_R0071 | - | 04 Glu tRNA
|

2900361 | 2900436 | - | 76 | 146291111 | Sputcn32_R0072 | - | 04 Glu tRNA
|

2900568 | 2900643 | - | 76 | 146291111 | Sputcn32_R0073 | - | 04 Glu tRNA
|

2900776 | 2900851 | - | 76 | 146291111 | Sputcn32_R0074 | - | 04 Glu tRNA
|

2901018 | 2901093 | - | 76 | 146291111 | Sputcn32_R0075 | - | 02 Ala tRNA
|

2901208 | 2901283 | - | 76 | 146291111 | Sputcn32_R0076 | - | 04 Glu tRNA
|

2901359 | 2901434 | - | 76 | 146291111 | Sputcn32_R0077 | - | 02 Ala tRNA
|

2903363 | 2903438 | + | 76 | 146291111 | Sputcn32_R0078 | - | 13 Val tRNA
|

2903483 | 2903558 | + | 76 | 146291111 | Sputcn32_R0079 | - | 13 Val tRNA
|

2903596 | 2903671 | + | 76 | 146291111 | Sputcn32_R0080 | - | 13 Val tRNA
|

2903716 | 2903791 | + | 76 | 146291111 | Sputcn32_R0081 | - | 13 Val tRNA
|

2903820 | 2903895 | + | 76 | 146291111 | Sputcn32_R0082 | - | 13 Val tRNA
|

2903924 | 2903999 | + | 76 | 146291111 | Sputcn32_R0083 | - | 13 Val tRNA
|

3025150 | 3025225 | + | 76 | 146291111 | Sputcn32_R0084 | - | 11 Arg tRNA
|

3130097 | 3130172 | + | 76 | 146291111 | Sputcn32_R0085 | - | 17 Phe tRNA
|

3130217 | 3130292 | + | 76 | 146291111 | Sputcn32_R0086 | - | 12 Thr tRNA
|

3130779 | 3130854 | + | 76 | 146291111 | Sputcn32_R0087 | - | 17 Phe tRNA
|

3130899 | 3130974 | + | 76 | 146291111 | Sputcn32_R0088 | - | 12 Thr tRNA
|

3175886 | 3175962 | - | 77 | 146291111 | Sputcn32_R0089 | - | 11 Arg tRNA
|

3176060 | 3176151 | - | 92 | 146291111 | Sputcn32_R0090 | - | 08 Ser tRNA
|

3176187 | 3176263 | - | 77 | 146291111 | Sputcn32_R0091 | - | 11 Arg tRNA
|

3176308 | 3176384 | - | 77 | 146291111 | Sputcn32_R0092 | - | 11 Arg tRNA
|

3176427 | 3176503 | - | 77 | 146291111 | Sputcn32_R0093 | - | 11 Arg tRNA
|

3176591 | 3176667 | - | 77 | 146291111 | Sputcn32_R0094 | - | 11 Arg tRNA
|

3176692 | 3176768 | - | 77 | 146291111 | Sputcn32_R0095 | - | 11 Arg tRNA
|

3176791 | 3176882 | - | 92 | 146291111 | Sputcn32_R0096 | - | 08 Ser tRNA
|

3297328 | 3297404 | - | 77 | 146291111 | Sputcn32_R0097 | - | 16 Met tRNA
|

3297487 | 3297573 | - | 87 | 146291111 | Sputcn32_R0098 | - | 15 Leu tRNA
|

3312375 | 3312449 | - | 75 | 146291111 | Sputcn32_R0099 | - | 05 Gln tRNA
|

3312492 | 3312576 | - | 85 | 146291111 | Sputcn32_R0100 | - | 15 Leu tRNA
|

3312659 | 3312735 | - | 77 | 146291111 | Sputcn32_R0101 | - | 16 Met tRNA
|

3312738 | 3312812 | - | 75 | 146291111 | Sputcn32_R0102 | - | 05 Gln tRNA
|

3312835 | 3312909 | - | 75 | 146291111 | Sputcn32_R0103 | - | 05 Gln tRNA
|

3312958 | 3313042 | - | 85 | 146291111 | Sputcn32_R0104 | - | 15 Leu tRNA
|

3313113 | 3313189 | - | 77 | 146291111 | Sputcn32_R0105 | - | 16 Met tRNA
|

3394306 | 3394382 | - | 77 | 146291111 | Sputcn32_R0106 | - | 20 Trp tRNA
|

3827923 | 3827998 | - | 76 | 146291111 | Sputcn32_R0107 | - | 01 Gly tRNA
|

3828005 | 3828080 | - | 76 | 146291111 | Sputcn32_R0108 | - | 01 Gly tRNA
|

3828123 | 3828198 | - | 76 | 146291111 | Sputcn32_R0109 | - | 01 Gly tRNA
|

3828320 | 3828395 | - | 76 | 146291111 | Sputcn32_R0110 | - | 01 Gly tRNA
|

4074802 | 4074922 | - | 121 | 146291111 | Sputcn32_R0111 | - | 5S ribosomal RNA |

4075153 | 4078045 | - | 2893 | 146291111 | Sputcn32_R0112 | - | 23S ribosomal RNA |

4078336 | 4078411 | - | 76 | 146291111 | Sputcn32_R0113 | - | 02 Ala tRNA
|

4078550 | 4078626 | - | 77 | 146291111 | Sputcn32_R0114 | - | 14 Ile tRNA
|

4078858 | 4080412 | - | 1555 | 146291111 | Sputcn32_R0115 | - | 16S ribosomal RNA |

4190881 | 4190957 | - | 77 | 146291111 | Sputcn32_R0116 | - | 03 Pro tRNA
|

4191110 | 4191186 | - | 77 | 146291111 | Sputcn32_R0117 | - | 03 Pro tRNA
|

4191306 | 4191381 | - | 76 | 146291111 | Sputcn32_R0118 | - | 09 His tRNA
|

4191434 | 4191510 | - | 77 | 146291111 | Sputcn32_R0119 | - | 11 Arg tRNA
|

4300525 | 4300822 | - | 298 | 146291111 | Sputcn32_R0120 | - | RNA component of RNaseP |

4333162 | 4333281 | - | 120 | 146291111 | Sputcn32_R0121 | - | 5S ribosomal RNA |

4333462 | 4336354 | - | 2893 | 146291111 | Sputcn32_R0122 | - | 23S ribosomal RNA |

4336818 | 4338372 | - | 1555 | 146291111 | Sputcn32_R0123 | - | 16S ribosomal RNA |

4380303 | 4380378 | - | 76 | 146291111 | Sputcn32_R0124 | - | 12 Thr tRNA
|

4380388 | 4380461 | - | 74 | 146291111 | Sputcn32_R0125 | - | 01 Gly tRNA
|

4380498 | 4380582 | - | 85 | 146291111 | Sputcn32_R0126 | - | 18 Tyr tRNA
|

4380590 | 4380665 | - | 76 | 146291111 | Sputcn32_R0127 | - | 12 Thr tRNA
|

4547401 | 4547521 | - | 121 | 146291111 | Sputcn32_R0128 | - | 5S ribosomal RNA |

4547749 | 4550641 | - | 2893 | 146291111 | Sputcn32_R0129 | - | 23S ribosomal RNA |

4550957 | 4552511 | - | 1555 | 146291111 | Sputcn32_R0130 | - | 16S ribosomal RNA |