Материалы:NC 008825

LOCUS NC_008825 4044195 bp DNA circular BCT 27-FEB-2007 DEFINITION Methylibium petroleiphilum PM1, complete genome. ACCESSION NC_008825 VERSION NC_008825.1 GI:124265193 KEYWORDS . SOURCE Methylibium petroleiphilum PM1 ORGANISM Methylibium petroleiphilum PM1 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium. REFERENCE 1 (bases 1 to 4044195) AUTHORS Kane,S.R., Chakicherla,A.Y., Chain,P.S., Schmidt,R., Shin,M.W., Legler,T.C., Scow,K.M., Larimer,F.W., Lucas,S.M., Richardson,P.M. and Hristova,K.R. CONSRTM US DOE Joint Genome Institute TITLE Whole-Genome Analysis of Methyl tert-Butyl Ether (MTBE)-Degrading Beta-Proteobacterium Methylibium petroleiphilum PM1 JOURNAL J. Bacteriol. 189 (5), 1931-1945 (2007) PUBMED 17158667 REFERENCE 2 (bases 1 to 4044195) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L. and Richardson,P. TITLE Direct Submission JOURNAL Submitted (19-JAN-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA REFERENCE 3 (bases 1 to 4044195) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (18-DEC-2002) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000555. URL -- http://www.jgi.doe.gov JGI Project ID: 3436553 Source DNA and bacteria available from Staci Kane (kane11@llnl.gov) Contacts: Staci Kane (kane11@llnl.gov) Krassimira R. Hristova (krhristova@ucdavis.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL,JGI-PGF and JGI-LLNL Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

148607 | 148683 | + | 77 | 124265193 | Mpe_AR0028 | - | 03 Pro tRNA
|

209062 | 209152 | - | 91 | 124265193 | Mpe_AR0029 | - | 08 Ser tRNA
|

225810 | 225885 | - | 76 | 124265193 | Mpe_AR0030 | - | 09 His tRNA
|

227996 | 228071 | - | 76 | 124265193 | Mpe_AR0031 | - | 13 Val tRNA
|

259322 | 259406 | + | 85 | 124265193 | Mpe_AR0032 | - | 15 Leu tRNA
|

352302 | 353832 | + | 1531 | 124265193 | Mpe_A0326a | - | 16S ribosomal RNA |

354393 | 357269 | + | 2877 | 124265193 | Mpe_A0326b | - | 23S ribosomal RNA |

357384 | 357499 | + | 116 | 124265193 | Mpe_A0326c | - | 5S ribosomal RNA |

436925 | 437001 | - | 77 | 124265193 | Mpe_AR0033 | - | 06 Asp tRNA
|

437048 | 437123 | - | 76 | 124265193 | Mpe_AR0034 | - | 04 Glu tRNA
|

437182 | 437257 | - | 76 | 124265193 | Mpe_AR0035 | - | 02 Ala tRNA
|

549475 | 549549 | - | 75 | 124265193 | Mpe_AR0036 | - | 13 Val tRNA
|

707118 | 707191 | - | 74 | 124265193 | Mpe_AR0037 | - | 01 Gly tRNA
|

747881 | 747974 | - | 94 | 124265193 | Mpe_AR0038 | - | 08 Ser tRNA
|

999370 | 999460 | - | 91 | 124265193 | Mpe_AR0039 | - | 08 Ser tRNA
|

1091801 | 1091876 | + | 76 | 124265193 | Mpe_AR0040 | - | 12 Thr tRNA
|

1171543 | 1171632 | + | 90 | 124265193 | Mpe_AR0041 | - | 08 Ser tRNA
|

1295213 | 1295288 | + | 76 | 124265193 | Mpe_AR0042 | - | 02 Ala tRNA
|

1321553 | 1321629 | - | 77 | 124265193 | Mpe_AR0043 | - | 11 Arg tRNA
|

1566338 | 1566414 | - | 77 | 124265193 | Mpe_AR0044 | - | 05 Gln tRNA
|

1670868 | 1670944 | - | 77 | 124265193 | Mpe_AR0045 | - | 16 Met tRNA
|

1764822 | 1764898 | - | 77 | 124265193 | Mpe_AR0046 | - | 16 Met tRNA
|

1800382 | 1800457 | - | 76 | 124265193 | Mpe_AR0047 | - | 20 Trp tRNA
|

1801719 | 1801793 | - | 75 | 124265193 | Mpe_AR0048 | - | 12 Thr tRNA
|

1801895 | 1801968 | - | 74 | 124265193 | Mpe_AR0049 | - | 01 Gly tRNA
|

1802065 | 1802150 | - | 86 | 124265193 | Mpe_AR0050 | - | 18 Tyr tRNA
|

1887386 | 1887461 | - | 76 | 124265193 | Mpe_AR0051 | - | 11 Arg tRNA
|

2477041 | 2477116 | + | 76 | 124265193 | Mpe_AR0052 | - | 17 Phe tRNA
|

2531273 | 2531349 | + | 77 | 124265193 | Mpe_AR0053 | - | 14 Ile tRNA
|

2531361 | 2531436 | + | 76 | 124265193 | Mpe_AR0054 | - | 02 Ala tRNA
|

2726461 | 2726537 | - | 77 | 124265193 | Mpe_AR0055 | - | 03 Pro tRNA
|

2760626 | 2760702 | - | 77 | 124265193 | Mpe_AR0056 | - | 16 Met tRNA
|

3067431 | 3067506 | + | 76 | 124265193 | Mpe_AR0057 | - | 12 Thr tRNA
|

3341502 | 3341576 | - | 75 | 124265193 | Mpe_AR0058 | - | 11 Arg tRNA
|

3385845 | 3385929 | - | 85 | 124265193 | Mpe_AR0059 | - | 15 Leu tRNA
|

3573437 | 3573523 | + | 87 | 124265193 | Mpe_AR0060 | - | 15 Leu tRNA
|

3579618 | 3579693 | + | 76 | 124265193 | Mpe_AR0061 | - | 01 Gly tRNA
|

3579779 | 3579852 | + | 74 | 124265193 | Mpe_AR0062 | - | 19 Cys tRNA
|

3631806 | 3631881 | + | 76 | 124265193 | Mpe_AR0063 | - | 10 Lys tRNA
|

3631920 | 3631995 | + | 76 | 124265193 | Mpe_AR0064 | - | 10 Lys tRNA
|

3659536 | 3659612 | + | 77 | 124265193 | Mpe_AR0065 | - | 03 Pro tRNA
|

3664884 | 3664960 | + | 77 | 124265193 | Mpe_AR0066 | - | 11 Arg tRNA
|

3690121 | 3690205 | + | 85 | 124265193 | Mpe_AR0067 | - | 15 Leu tRNA
|

3787121 | 3787196 | - | 76 | 124265193 | Mpe_AR0068 | - | 07 Asn tRNA
|

3882870 | 3882946 | + | 77 | 124265193 | Mpe_AR0069 | - | 13 Val tRNA
|