Материалы:NC 009718

LOCUS NC_009718 1948941 bp DNA circular BCT 05-SEP-2007 DEFINITION Fervidobacterium nodosum Rt17-B1, complete genome. ACCESSION NC_009718 VERSION NC_009718.1 GI:154248705 KEYWORDS . SOURCE Fervidobacterium nodosum Rt17-B1 ORGANISM Fervidobacterium nodosum Rt17-B1 Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Fervidobacterium. REFERENCE 1 (bases 1 to 1948941) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Fervidobacterium nodosum Rt17-B1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1948941) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (31-JUL-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1948941) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-JUL-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000771. URL -- http://www.jgi.doe.gov JGI Project ID: 4002340 Source DNA and bacteria available from Kenneth Noll (kenneth.noll@uconn.edu) Contacts: Kenneth Noll (kenneth.noll@uconn.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

36410 | 36485 | + | 76 | 154248705 | Fnod_R0001 | - | 07 Asn tRNA
|

38615 | 38690 | + | 76 | 154248705 | Fnod_R0002 | - | 07 Asn tRNA
|

118612 | 118687 | + | 76 | 154248705 | Fnod_R0003 | - | 01 Gly tRNA
|

360021 | 360097 | - | 77 | 154248705 | Fnod_R0004 | - | 11 Arg tRNA
|

400417 | 400492 | + | 76 | 154248705 | Fnod_R0005 | - | 16 Met tRNA
|

400531 | 400606 | + | 76 | 154248705 | Fnod_R0006 | - | 12 Thr tRNA
|

400645 | 400720 | + | 76 | 154248705 | Fnod_R0007 | - | 12 Thr tRNA
|

464706 | 464783 | - | 78 | 154248705 | Fnod_R0008 | - | 06 Asp tRNA
|

568302 | 568377 | + | 76 | 154248705 | Fnod_R0009 | - | 02 Ala tRNA
|

723775 | 723849 | + | 75 | 154248705 | Fnod_R0010 | - | 04 Glu tRNA
|

723873 | 723947 | + | 75 | 154248705 | Fnod_R0011 | - | 11 Arg tRNA
|

723953 | 724028 | + | 76 | 154248705 | Fnod_R0012 | - | 10 Lys tRNA
|

737090 | 737165 | - | 76 | 154248705 | Fnod_R0013 | - | 16 Met tRNA
|

737173 | 737249 | - | 77 | 154248705 | Fnod_R0014 | - | 19 Cys tRNA
|

799989 | 800079 | - | 91 | 154248705 | Fnod_R0015 | - | 08 Ser tRNA
|

808486 | 808601 | - | 116 | 154248705 | Fnod_R0016 | - | 5S ribosomal RNA |

808629 | 810537 | - | 1909 | 154248705 | Fnod_R0017 | - | |

811605 | 812621 | - | 1017 | 154248705 | Fnod_R0017 | - | |

812659 | 812734 | - | 76 | 154248705 | Fnod_R0018 | - | 02 Ala tRNA
|

812740 | 812816 | - | 77 | 154248705 | Fnod_R0019 | - | 14 Ile tRNA
|

812858 | 814365 | - | 1508 | 154248705 | Fnod_R0020 | - | 16S ribosomal RNA |

863991 | 864078 | + | 88 | 154248705 | Fnod_R0021 | - | 08 Ser tRNA
|

901024 | 901098 | + | 75 | 154248705 | Fnod_R0022 | - | 13 Val tRNA
|

926644 | 926719 | - | 76 | 154248705 | Fnod_R0023 | - | 20 Trp tRNA
|

926951 | 927037 | - | 87 | 154248705 | Fnod_R0024 | - | 18 Tyr tRNA
|

927069 | 927144 | - | 76 | 154248705 | Fnod_R0025 | - | 12 Thr tRNA
|

935367 | 935442 | + | 76 | 154248705 | Fnod_R0026 | - | 10 Lys tRNA
|

935452 | 935541 | + | 90 | 154248705 | Fnod_R0027 | - | 15 Leu tRNA
|

935568 | 935642 | + | 75 | 154248705 | Fnod_R0028 | - | 01 Gly tRNA
|

935683 | 935770 | + | 88 | 154248705 | Fnod_R0029 | - | 15 Leu tRNA
|

935845 | 936205 | + | 361 | 154248705 | Fnod_R0030 | - | tmRNA |

946700 | 946776 | + | 77 | 154248705 | Fnod_R0031 | - | 12 Thr tRNA
|

981235 | 981338 | + | 104 | 154248705 | Fnod_R0032 | - | SRP RNA; RNA component of signal recognition particle |

981444 | 981715 | - | 272 | 154248705 | Fnod_R0033 | - | RNA component of RNaseP |

1049789 | 1049878 | + | 90 | 154248705 | Fnod_R0034 | - | 15 Leu tRNA
|

1049920 | 1049996 | + | 77 | 154248705 | Fnod_R0035 | - | 16 Met tRNA
|

1132987 | 1133063 | - | 77 | 154248705 | Fnod_R0036 | - | 11 Arg tRNA
|

1133095 | 1133170 | - | 76 | 154248705 | Fnod_R0037 | - | 09 His tRNA
|

1133206 | 1133282 | - | 77 | 154248705 | Fnod_R0038 | - | 11 Arg tRNA
|

1133310 | 1133385 | - | 76 | 154248705 | Fnod_R0039 | - | 01 Gly tRNA
|

1133389 | 1133465 | - | 77 | 154248705 | Fnod_R0040 | - | 03 Pro tRNA
|

1136879 | 1136954 | - | 76 | 154248705 | Fnod_R0041 | - | 17 Phe tRNA
|

1137015 | 1137089 | - | 75 | 154248705 | Fnod_R0042 | - | 13 Val tRNA
|

1137124 | 1137199 | - | 76 | 154248705 | Fnod_R0043 | - | 04 Glu tRNA
|

1201212 | 1201288 | - | 77 | 154248705 | Fnod_R0044 | - | 03 Pro tRNA
|

1228972 | 1229046 | - | 75 | 154248705 | Fnod_R0045 | - | 05 Gln tRNA
|

1229097 | 1229171 | - | 75 | 154248705 | Fnod_R0046 | - | 13 Val tRNA
|

1231370 | 1231459 | + | 90 | 154248705 | Fnod_R0047 | - | 08 Ser tRNA
|

1280569 | 1280684 | - | 116 | 154248705 | Fnod_R0048 | - | 5S ribosomal RNA |

1280727 | 1283637 | - | 2911 | 154248705 | Fnod_R0049 | - | 23S ribosomal RNA |

1283675 | 1283750 | - | 76 | 154248705 | Fnod_R0050 | - | 02 Ala tRNA
|

1283756 | 1283832 | - | 77 | 154248705 | Fnod_R0051 | - | 14 Ile tRNA
|

1283874 | 1285381 | - | 1508 | 154248705 | Fnod_R0052 | - | 16S ribosomal RNA |

1577787 | 1577860 | - | 74 | 154248705 | Fnod_R0053 | - | 05 Gln tRNA
|

1677953 | 1678028 | - | 76 | 154248705 | Fnod_R0054 | - | 02 Ala tRNA
|

1685728 | 1685815 | + | 88 | 154248705 | Fnod_R0055 | - | 15 Leu tRNA
|

1730518 | 1730607 | + | 90 | 154248705 | Fnod_R0056 | - | 08 Ser tRNA
|

1730682 | 1730758 | + | 77 | 154248705 | Fnod_R0057 | - | 11 Arg tRNA
|

1887004 | 1887080 | - | 77 | 154248705 | Fnod_R0058 | - | 03 Pro tRNA
|

1929272 | 1929356 | + | 85 | 154248705 | Fnod_R0059 | - | 15 Leu tRNA
|