Материалы:NC 008497

LOCUS NC_008497 2291220 bp DNA circular BCT 31-OCT-2006 DEFINITION Lactobacillus brevis ATCC 367, complete genome. ACCESSION NC_008497 VERSION NC_008497.1 GI:116332681 KEYWORDS . SOURCE Lactobacillus brevis ATCC 367 ORGANISM Lactobacillus brevis ATCC 367 Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. REFERENCE 1 (bases 1 to 2291220) AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B., Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K., Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J., Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B., Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E., Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D., Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D., Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P., Kozyavkin,S., Weimer,B. and Mills,D. TITLE Comparative genomics of the lactic acid bacteria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006) PUBMED 17030793 REFERENCE 2 (bases 1 to 2291220) AUTHORS . CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (21-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2291220) AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S., Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S., Makarova,K., Koonin,E., Mills,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc. TITLE Direct Submission JOURNAL Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000416. URL -- http://www.jgi.doe.gov JGI Project ID: 2662178 Source DNA and bacteria available from Milton Saier (msaier@ucsd.edu) Bacteria also available from ATCC: ATCC 367 Contacts: Milton Saier (msaier@ucsd.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by Kira Makarova and Eugene Koonin Finishing done by Fidelity Systems Inc. (Gaithersburg)URL -- http://www.fidelitysystems.com Project Information available at: http://genome.jgi-psf.org/mic_home.html The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

31448 | 31523 | - | 76 | 116332681 | LVIS_t0028 | - | 10 Lys tRNA
|

76914 | 76986 | + | 73 | 116332681 | LVIS_t0073 | - | 04 Glu tRNA
|

76996 | 77067 | + | 72 | 116332681 | LVIS_t0074 | - | 05 Gln tRNA
|

86149 | 87711 | + | 1563 | 116332681 | LVIS_r0082 | - | 16S ribosomal RNA |

87928 | 90845 | + | 2918 | 116332681 | LVIS_r0083 | - | 23S ribosomal RNA |

90914 | 91032 | + | 119 | 116332681 | LVIS_r0084 | - | 5S ribosomal RNA |

453214 | 454776 | + | 1563 | 116332681 | LVIS_r0425 | - | 16S ribosomal RNA |

454993 | 457910 | + | 2918 | 116332681 | LVIS_r0426 | - | 23S ribosomal RNA |

457979 | 458097 | + | 119 | 116332681 | LVIS_r0427 | - | 5S ribosomal RNA |

458170 | 458242 | + | 73 | 116332681 | LVIS_t0428 | - | 12 Thr tRNA
|

562993 | 564555 | + | 1563 | 116332681 | LVIS_r0526 | - | 16S ribosomal RNA |

564635 | 564709 | + | 75 | 116332681 | LVIS_t0527 | - | 14 Ile tRNA
|

564732 | 564804 | + | 73 | 116332681 | LVIS_t0528 | - | 02 Ala tRNA
|

564974 | 567891 | + | 2918 | 116332681 | LVIS_r0529 | - | 23S ribosomal RNA |

567960 | 568078 | + | 119 | 116332681 | LVIS_r0530 | - | 5S ribosomal RNA |

568083 | 568155 | + | 73 | 116332681 | LVIS_t0531 | - | 07 Asn tRNA
|

568187 | 568262 | + | 76 | 116332681 | LVIS_t0532 | - | 12 Thr tRNA
|

571607 | 571689 | + | 83 | 116332681 | LVIS_t0536 | - | 18 Tyr tRNA
|

571699 | 571773 | + | 75 | 116332681 | LVIS_t0537 | - | 05 Gln tRNA
|

582938 | 583022 | + | 85 | 116332681 | LVIS_t0549 | - | 15 Leu tRNA
|

686104 | 686178 | + | 75 | 116332681 | LVIS_t0657 | - | 11 Arg tRNA
|

686979 | 687050 | + | 72 | 116332681 | LVIS_t0659 | - | 11 Arg tRNA
|

874659 | 874999 | - | 341 | 116332681 | LVIS_r0847 | - | RNA_RNaseP_classB |

1118040 | 1118112 | - | 73 | 116332681 | LVIS_t1109 | - | Xaa tRNA |

1118275 | 1118332 | - | 58 | 116332681 | LVIS_t1110 | - | Xaa tRNA |

1118379 | 1118461 | - | 83 | 116332681 | LVIS_t1111 | - | 18 Tyr tRNA
|

1141829 | 1141903 | - | 75 | 116332681 | LVIS_t1152 | - | 06 Asp tRNA
|

1141909 | 1141982 | - | 74 | 116332681 | LVIS_t1153 | - | 16 Met tRNA
|

1142003 | 1142075 | - | 73 | 116332681 | LVIS_t1154 | - | 04 Glu tRNA
|

1142083 | 1142170 | - | 88 | 116332681 | LVIS_t1155 | - | 08 Ser tRNA
|

1142175 | 1142249 | - | 75 | 116332681 | LVIS_t1156 | - | 14 Ile tRNA
|

1142256 | 1142326 | - | 71 | 116332681 | LVIS_t1157 | - | 01 Gly tRNA
|

1142342 | 1142414 | - | 73 | 116332681 | LVIS_t1158 | - | 17 Phe tRNA
|

1142467 | 1142541 | - | 75 | 116332681 | LVIS_t1159 | - | 06 Asp tRNA
|

1142547 | 1142620 | - | 74 | 116332681 | LVIS_t1160 | - | 16 Met tRNA
|

1142631 | 1142720 | - | 90 | 116332681 | LVIS_t1161 | - | 08 Ser tRNA
|

1142754 | 1142827 | - | 74 | 116332681 | LVIS_t1162 | - | 16 Met tRNA
|

1142842 | 1142915 | - | 74 | 116332681 | LVIS_t1163 | - | 16 Met tRNA
|

1142942 | 1143015 | - | 74 | 116332681 | LVIS_t1164 | - | 03 Pro tRNA
|

1143022 | 1143095 | - | 74 | 116332681 | LVIS_t1165 | - | 11 Arg tRNA
|

1143128 | 1143199 | - | 72 | 116332681 | LVIS_t1166 | - | 01 Gly tRNA
|

1143205 | 1143277 | - | 73 | 116332681 | LVIS_t1167 | - | 12 Thr tRNA
|

1143327 | 1143399 | - | 73 | 116332681 | LVIS_t1168 | - | 10 Lys tRNA
|

1143403 | 1143475 | - | 73 | 116332681 | LVIS_t1169 | - | 13 Val tRNA
|

1143481 | 1143599 | - | 119 | 116332681 | LVIS_r1170 | - | 5S ribosomal RNA |

1143668 | 1146585 | - | 2918 | 116332681 | LVIS_r1171 | - | 23S ribosomal RNA |

1146802 | 1148364 | - | 1563 | 116332681 | LVIS_r1172 | - | 16S ribosomal RNA |

1277086 | 1277161 | - | 76 | 116332681 | LVIS_t1305 | - | 05 Gln tRNA
|

1277341 | 1277414 | + | 74 | 116332681 | LVIS_t1306 | - | 04 Glu tRNA
|

1289472 | 1289843 | + | 372 | 116332681 | LVIS_s1317 | - | tmRNA |

1341522 | 1341609 | - | 88 | 116332681 | LVIS_t1370 | - | 08 Ser tRNA
|

1464858 | 1464928 | - | 71 | 116332681 | LVIS_t1492 | - | 01 Gly tRNA
|

1482583 | 1482666 | - | 84 | 116332681 | LVIS_t1510 | - | 15 Leu tRNA
|

1500095 | 1500179 | - | 85 | 116332681 | LVIS_t1530 | - | 15 Leu tRNA
|

1500214 | 1500284 | - | 71 | 116332681 | LVIS_t1531 | - | 19 Cys tRNA
|

1500339 | 1500414 | - | 76 | 116332681 | LVIS_t1532 | - | 09 His tRNA
|

1500428 | 1500498 | - | 71 | 116332681 | LVIS_t1533 | - | 20 Trp tRNA
|

1500500 | 1500585 | - | 86 | 116332681 | LVIS_t1534 | - | 18 Tyr tRNA
|

1500590 | 1500662 | - | 73 | 116332681 | LVIS_t1535 | - | 17 Phe tRNA
|

1500710 | 1500784 | - | 75 | 116332681 | LVIS_t1536 | - | 06 Asp tRNA
|

1500804 | 1500876 | - | 73 | 116332681 | LVIS_t1537 | - | 13 Val tRNA
|

1500881 | 1500953 | - | 73 | 116332681 | LVIS_t1538 | - | 04 Glu tRNA
|

1500967 | 1501057 | - | 91 | 116332681 | LVIS_t1539 | - | 08 Ser tRNA
|

1501067 | 1501139 | - | 73 | 116332681 | LVIS_t1540 | - | 07 Asn tRNA
|

1501144 | 1501262 | - | 119 | 116332681 | LVIS_r1541 | - | 5S ribosomal RNA |

1501331 | 1504248 | - | 2918 | 116332681 | LVIS_r1542 | - | 23S ribosomal RNA |

1504418 | 1504490 | - | 73 | 116332681 | LVIS_t1543 | - | 02 Ala tRNA
|

1504513 | 1504587 | - | 75 | 116332681 | LVIS_t1544 | - | 14 Ile tRNA
|

1504667 | 1506229 | - | 1563 | 116332681 | LVIS_r1545 | - | 16S ribosomal RNA |

1544596 | 1544668 | - | 73 | 116332681 | LVIS_t1579 | - | 11 Arg tRNA
|

1664631 | 1664704 | - | 74 | 116332681 | LVIS_t1702 | - | 03 Pro tRNA
|

1664733 | 1664806 | - | 74 | 116332681 | LVIS_t1703 | - | 03 Pro tRNA
|

1664841 | 1664914 | - | 74 | 116332681 | LVIS_t1704 | - | 11 Arg tRNA
|

1664935 | 1665020 | - | 86 | 116332681 | LVIS_t1705 | - | 15 Leu tRNA
|

1665031 | 1665102 | - | 72 | 116332681 | LVIS_t1706 | - | 01 Gly tRNA
|

1665129 | 1665201 | - | 73 | 116332681 | LVIS_t1707 | - | 12 Thr tRNA
|

1665239 | 1665320 | - | 82 | 116332681 | LVIS_t1708 | - | 15 Leu tRNA
|

1665358 | 1665430 | - | 73 | 116332681 | LVIS_t1709 | - | 13 Val tRNA
|

1801928 | 1802000 | + | 73 | 116332681 | LVIS_t1841 | - | 02 Ala tRNA
|

1895453 | 1895526 | - | 74 | 116332681 | LVIS_t1937 | - | 11 Arg tRNA
|

2091276 | 2091347 | - | 72 | 116332681 | LVIS_t2126 | - | 11 Arg tRNA
|

2113225 | 2113296 | - | 72 | 116332681 | LVIS_t2146 | - | 05 Gln tRNA
|