Материалы:NC 007406

LOCUS NC_007406 3402093 bp DNA circular BCT 19-OCT-2006 DEFINITION Nitrobacter winogradskyi Nb-255, complete genome. ACCESSION NC_007406 VERSION NC_007406.1 GI:75674199 KEYWORDS . SOURCE Nitrobacter winogradskyi Nb-255 ORGANISM Nitrobacter winogradskyi Nb-255 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter. REFERENCE 1 (bases 1 to 3402093) AUTHORS Starkenburg,S.R., Chain,P.S., Sayavedra-Soto,L.A., Hauser,L., Land,M.L., Larimer,F.W., Malfatti,S.A., Klotz,M.G., Bottomley,P.J., Arp,D.J. and Hickey,W.J. TITLE Genome sequence of the chemolithoautotrophic nitrite-oxidizing bacterium Nitrobacter winogradskyi Nb-255 JOURNAL Appl. Environ. Microbiol. 72 (3), 2050-2063 (2006) PUBMED 16517654 REFERENCE 2 (bases 1 to 3402093) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyripides,N., Lykidis,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Nitrobacter winogradskyi Nb-255 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3402093) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 3402093) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyripides,N., Lykidis,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (01-SEP-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000115. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

87473 | 87547 | - | 75 | 75674199 | Nwi_R0001 | - | 01 Gly tRNA
|

167120 | 167193 | + | 74 | 75674199 | Nwi_R0002 | - | 01 Gly tRNA
|

194684 | 194770 | + | 87 | 75674199 | Nwi_R0003 | - | 15 Leu tRNA
|

241612 | 241687 | + | 76 | 75674199 | Nwi_R0004 | - | 02 Ala tRNA
|

274519 | 274593 | - | 75 | 75674199 | Nwi_R0005 | - | 12 Thr tRNA
|

310616 | 310691 | - | 76 | 75674199 | Nwi_R0006 | - | 17 Phe tRNA
|

416069 | 416171 | + | 103 | 75674199 | Nwi_R0007 | - | SRP RNA; RNA component of signal recognitionparticle |

494086 | 494175 | - | 90 | 75674199 | Nwi_R0008 | - | 08 Ser tRNA
|

512678 | 512754 | + | 77 | 75674199 | Nwi_R0009 | - | 11 Arg tRNA
|

533217 | 533292 | + | 76 | 75674199 | Nwi_R0010 | - | 12 Thr tRNA
|

535345 | 535420 | - | 76 | 75674199 | Nwi_R0011 | - | 02 Ala tRNA
|

589505 | 589580 | + | 76 | 75674199 | Nwi_R0012 | - | 16 Met tRNA
|

638302 | 639791 | + | 1490 | 75674199 | Nwi_R0013 | - | 16S ribosomal RNA |

639999 | 640075 | + | 77 | 75674199 | Nwi_R0014 | - | 14 Ile tRNA
|

640108 | 640183 | + | 76 | 75674199 | Nwi_R0015 | - | 02 Ala tRNA
|

640614 | 643442 | + | 2829 | 75674199 | Nwi_R0016 | - | 23S ribosomal RNA |

643504 | 643618 | + | 115 | 75674199 | Nwi_R0017 | - | 5S ribosomal RNA |

684778 | 684854 | + | 77 | 75674199 | Nwi_R0018 | - | 16 Met tRNA
|

718800 | 718874 | + | 75 | 75674199 | Nwi_R0019 | - | 05 Gln tRNA
|

826066 | 826150 | - | 85 | 75674199 | Nwi_R0020 | - | 15 Leu tRNA
|

915544 | 915620 | + | 77 | 75674199 | Nwi_R0021 | - | 16 Met tRNA
|

1113523 | 1113599 | + | 77 | 75674199 | Nwi_R0022 | - | 09 His tRNA
|

1377955 | 1378028 | + | 74 | 75674199 | Nwi_R0023 | - | 05 Gln tRNA
|

1475662 | 1475737 | - | 76 | 75674199 | Nwi_R0024 | - | 20 Trp tRNA
|

1533855 | 1533932 | + | 78 | 75674199 | Nwi_R0025 | - | 03 Pro tRNA
|

1619556 | 1619645 | + | 90 | 75674199 | Nwi_R0026 | - | 08 Ser tRNA
|

1652754 | 1652827 | - | 74 | 75674199 | Nwi_R0027 | - | 19 Cys tRNA
|

1682382 | 1682458 | + | 77 | 75674199 | Nwi_R0028 | - | 11 Arg tRNA
|

1709371 | 1709448 | + | 78 | 75674199 | Nwi_R0029 | - | 11 Arg tRNA
|

1755655 | 1755731 | - | 77 | 75674199 | Nwi_R0030 | - | 03 Pro tRNA
|

1759786 | 1759860 | + | 75 | 75674199 | Nwi_R0031 | - | 04 Glu tRNA
|

1890319 | 1890403 | - | 85 | 75674199 | Nwi_R0032 | - | 15 Leu tRNA
|

1906243 | 1906319 | + | 77 | 75674199 | Nwi_R0033 | - | 11 Arg tRNA
|

1951048 | 1951122 | + | 75 | 75674199 | Nwi_R0034 | - | 07 Asn tRNA
|

1962421 | 1962496 | + | 76 | 75674199 | Nwi_R0035 | - | 10 Lys tRNA
|

2073336 | 2073412 | - | 77 | 75674199 | Nwi_R0036 | - | 06 Asp tRNA
|

2078266 | 2078342 | + | 77 | 75674199 | Nwi_R0037 | - | 13 Val tRNA
|

2085537 | 2085621 | - | 85 | 75674199 | Nwi_R0038 | - | 15 Leu tRNA
|

2121035 | 2121128 | + | 94 | 75674199 | Nwi_R0039 | - | 08 Ser tRNA
|

2244358 | 2244431 | - | 74 | 75674199 | Nwi_R0040 | - | 01 Gly tRNA
|

2246251 | 2246336 | + | 86 | 75674199 | Nwi_R0041 | - | 18 Tyr tRNA
|

2253607 | 2253681 | + | 75 | 75674199 | Nwi_R0042 | - | 12 Thr tRNA
|

2381182 | 2381270 | - | 89 | 75674199 | Nwi_R0043 | - | 15 Leu tRNA
|

2555231 | 2555306 | - | 76 | 75674199 | Nwi_R0044 | - | 10 Lys tRNA
|

2573201 | 2573521 | + | 321 | 75674199 | Nwi_R0045 | - | tmRNA |

2654247 | 2654321 | + | 75 | 75674199 | Nwi_R0046 | - | 04 Glu tRNA
|

2671615 | 2671689 | + | 75 | 75674199 | Nwi_R0047 | - | Xaa tRNA |

2672041 | 2672113 | - | 73 | 75674199 | Nwi_R0048 | - | Xaa tRNA |

2681975 | 2682360 | + | 386 | 75674199 | Nwi_R0049 | - | RNA component of RNaseP |

2928541 | 2928617 | - | 77 | 75674199 | Nwi_R0050 | - | 03 Pro tRNA
|

3069030 | 3069119 | - | 90 | 75674199 | Nwi_R0051 | - | 08 Ser tRNA
|

3180981 | 3181055 | - | 75 | 75674199 | Nwi_R0052 | - | 13 Val tRNA
|

3259630 | 3259704 | + | 75 | 75674199 | Nwi_R0053 | - | 13 Val tRNA
|

3342499 | 3342575 | + | 77 | 75674199 | Nwi_R0054 | - | 11 Arg tRNA
|

3397654 | 3397730 | - | 77 | 75674199 | Nwi_R0055 | - | 11 Arg tRNA
|