Материалы:NC 008527

LOCUS NC_008527 2438589 bp DNA circular BCT 14-FEB-2007 DEFINITION Lactococcus lactis subsp. cremoris SK11, complete genome. ACCESSION NC_008527 VERSION NC_008527.1 GI:116510843 KEYWORDS . SOURCE Lactococcus lactis subsp. cremoris SK11 ORGANISM Lactococcus lactis subsp. cremoris SK11 Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Lactococcus. REFERENCE 1 (bases 1 to 2438589) AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B., Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K., Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J., Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B., Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E., Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D., Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D., Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P., Kozyavkin,S., Weimer,B. and Mills,D. TITLE Comparative genomics of the lactic acid bacteria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006) PUBMED 17030793 REFERENCE 2 (bases 1 to 2438589) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2438589) AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S., Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S., Makarova,K., Koonin,E., Mills,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc. TITLE Direct Submission JOURNAL Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000425. URL -- http://www.jgi.doe.gov JGI Project ID: 2662180 Source DNA and bacteria available from Bart Weimer (milkbugs@cc.usu.edu) Contacts: Bart Weimer (milkbugs@cc.usu.edu) Larry McKay (lmckay@umn.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by Kira Makarova and Eugene Koonin Finishing done by Fidelity Systems Inc. (Gaithersburg)URL -- http://www.fidelitysystems.com Project Information available at: http://genome.jgi-psf.org/mic_home.html The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

25190 | 25261 | + | 72 | 116510843 | LACR_t0019 | - | 04 Glu tRNA
|

25267 | 25356 | + | 90 | 116510843 | LACR_t0020 | - | 08 Ser tRNA
|

25367 | 25440 | + | 74 | 116510843 | LACR_t0021 | - | 16 Met tRNA
|

25446 | 25518 | + | 73 | 116510843 | LACR_t0022 | - | 17 Phe tRNA
|

25530 | 25600 | + | 71 | 116510843 | LACR_t0023 | - | 01 Gly tRNA
|

25615 | 25688 | + | 74 | 116510843 | LACR_t0024 | - | 14 Ile tRNA
|

25709 | 25791 | + | 83 | 116510843 | LACR_r0025 | - | 5S ribosomal RNA |

25813 | 25886 | + | 74 | 116510843 | LACR_t0026 | - | 07 Asn tRNA
|

40828 | 40900 | + | 73 | 116510843 | LACR_t0045 | - | 10 Lys tRNA
|

100707 | 100795 | - | 89 | 116510843 | LACR_t0108 | - | 15 Leu tRNA
|

113775 | 113861 | - | 87 | 116510843 | LACR_t0124 | - | 08 Ser tRNA
|

145002 | 145077 | - | 76 | 116510843 | LACR_t0158 | - | 12 Thr tRNA
|

242931 | 243019 | - | 89 | 116510843 | LACR_t0261 | - | 15 Leu tRNA
|

266943 | 267030 | - | 88 | 116510843 | LACR_t0287 | - | 08 Ser tRNA
|

275529 | 275602 | + | 74 | 116510843 | LACR_t0296 | - | 11 Arg tRNA
|

275665 | 275738 | + | 74 | 116510843 | LACR_t0297 | - | 03 Pro tRNA
|

442168 | 442238 | + | 71 | 116510843 | LACR_t0471 | - | 19 Cys tRNA
|

466065 | 466138 | + | 74 | 116510843 | LACR_t0490 | - | 11 Arg tRNA
|

518197 | 519744 | + | 1548 | 116510843 | LACR_r0552 | - | 16S ribosomal RNA |

519838 | 519910 | + | 73 | 116510843 | LACR_t0553 | - | 02 Ala tRNA
|

520049 | 522949 | + | 2901 | 116510843 | LACR_r0554 | - | 23S ribosomal RNA |

523033 | 523148 | + | 116 | 116510843 | LACR_r0555 | - | 5S ribosomal RNA |

523151 | 523223 | + | 73 | 116510843 | LACR_t0556 | - | 13 Val tRNA
|

523253 | 523325 | + | 73 | 116510843 | LACR_t0557 | - | 06 Asp tRNA
|

523343 | 523415 | + | 73 | 116510843 | LACR_t0558 | - | 10 Lys tRNA
|

523425 | 523506 | + | 82 | 116510843 | LACR_t0559 | - | 15 Leu tRNA
|

523520 | 523592 | + | 73 | 116510843 | LACR_t0560 | - | 12 Thr tRNA
|

523618 | 523689 | + | 72 | 116510843 | LACR_t0561 | - | 01 Gly tRNA
|

523728 | 523801 | + | 74 | 116510843 | LACR_t0562 | - | 11 Arg tRNA
|

523807 | 523880 | + | 74 | 116510843 | LACR_t0563 | - | 03 Pro tRNA
|

523918 | 523991 | + | 74 | 116510843 | LACR_t0564 | - | 16 Met tRNA
|

524004 | 524077 | + | 74 | 116510843 | LACR_t0565 | - | 16 Met tRNA
|

524085 | 524157 | + | 73 | 116510843 | LACR_t0566 | - | 17 Phe tRNA
|

524168 | 524238 | + | 71 | 116510843 | LACR_t0567 | - | 01 Gly tRNA
|

524264 | 524337 | + | 74 | 116510843 | LACR_t0568 | - | 14 Ile tRNA
|

524380 | 524467 | + | 88 | 116510843 | LACR_t0569 | - | 08 Ser tRNA
|

593652 | 593723 | + | 72 | 116510843 | LACR_t0650 | - | 11 Arg tRNA
|

595838 | 595913 | + | 76 | 116510843 | LACR_t0653 | - | 10 Lys tRNA
|

701024 | 701097 | + | 74 | 116510843 | LACR_t0753 | - | 16 Met tRNA
|

1050871 | 1050941 | + | 71 | 116510843 | LACR_t1131 | - | 10 Lys tRNA
|

1442402 | 1442760 | - | 359 | 116510843 | LACR_s1521 | - | tmRNA |

1662594 | 1662654 | - | 61 | 116510843 | LACR_t1753 | - | Xaa tRNA |

1701366 | 1701437 | - | 72 | 116510843 | LACR_t1806 | - | 05 Gln tRNA
|

1712611 | 1712953 | - | 343 | 116510843 | LACR_r1817 | - | RNA_RNaseP_classB |

1722108 | 1722180 | + | 73 | 116510843 | LACR_t1827 | - | 11 Arg tRNA
|

2037034 | 2037119 | - | 86 | 116510843 | LACR_t2169 | - | 15 Leu tRNA
|

2037154 | 2037225 | - | 72 | 116510843 | LACR_t2170 | - | 01 Gly tRNA
|

2037251 | 2037323 | - | 73 | 116510843 | LACR_t2171 | - | 12 Thr tRNA
|

2037337 | 2037418 | - | 82 | 116510843 | LACR_t2172 | - | 15 Leu tRNA
|

2037428 | 2037500 | - | 73 | 116510843 | LACR_t2173 | - | 10 Lys tRNA
|

2037518 | 2037590 | - | 73 | 116510843 | LACR_t2174 | - | 06 Asp tRNA
|

2037620 | 2037692 | - | 73 | 116510843 | LACR_t2175 | - | 13 Val tRNA
|

2037695 | 2037810 | - | 116 | 116510843 | LACR_r2176 | - | 5S ribosomal RNA |

2037894 | 2040794 | - | 2901 | 116510843 | LACR_r2177 | - | 23S ribosomal RNA |

2040933 | 2041005 | - | 73 | 116510843 | LACR_t2178 | - | 02 Ala tRNA
|

2041099 | 2042646 | - | 1548 | 116510843 | LACR_r2179 | - | 16S ribosomal RNA |

2215035 | 2215107 | - | 73 | 116510843 | LACR_t2373 | - | 12 Thr tRNA
|

2277714 | 2277829 | - | 116 | 116510843 | LACR_r2448 | - | 5S ribosomal RNA |

2277913 | 2280813 | - | 2901 | 116510843 | LACR_r2449 | - | 23S ribosomal RNA |

2280952 | 2281024 | - | 73 | 116510843 | LACR_t2450 | - | 02 Ala tRNA
|

2281118 | 2282665 | - | 1548 | 116510843 | LACR_r2451 | - | 16S ribosomal RNA |

2322623 | 2322738 | - | 116 | 116510843 | LACR_r2491 | - | 5S ribosomal RNA |

2322822 | 2325722 | - | 2901 | 116510843 | LACR_r2492 | - | 23S ribosomal RNA |

2325861 | 2325933 | - | 73 | 116510843 | LACR_t2493 | - | 02 Ala tRNA
|

2326027 | 2327574 | - | 1548 | 116510843 | LACR_r2494 | - | 16S ribosomal RNA |

2354653 | 2354735 | - | 83 | 116510843 | LACR_t2523 | - | 15 Leu tRNA
|

2396521 | 2396604 | - | 84 | 116510843 | LACR_t2563 | - | 15 Leu tRNA
|

2396617 | 2396688 | - | 72 | 116510843 | LACR_t2564 | - | 05 Gln tRNA
|

2396697 | 2396769 | - | 73 | 116510843 | LACR_t2565 | - | 09 His tRNA
|

2396781 | 2396851 | - | 71 | 116510843 | LACR_t2566 | - | 20 Trp tRNA
|

2396868 | 2396948 | - | 81 | 116510843 | LACR_t2567 | - | 18 Tyr tRNA
|

2396984 | 2397056 | - | 73 | 116510843 | LACR_t2568 | - | 13 Val tRNA
|

2397059 | 2397174 | - | 116 | 116510843 | LACR_r2569 | - | 5S ribosomal RNA |

2397258 | 2400158 | - | 2901 | 116510843 | LACR_r2570 | - | 23S ribosomal RNA |

2400297 | 2400369 | - | 73 | 116510843 | LACR_t2571 | - | 02 Ala tRNA
|

2400463 | 2402010 | - | 1548 | 116510843 | LACR_r2572 | - | 16S ribosomal RNA |

2432785 | 2432858 | - | 74 | 116510843 | LACR_t2604 | - | 07 Asn tRNA
|

2432895 | 2432966 | - | 72 | 116510843 | LACR_t2605 | - | 04 Glu tRNA
|

2432976 | 2433091 | - | 116 | 116510843 | LACR_r2606 | - | 5S ribosomal RNA |

2433175 | 2436075 | - | 2901 | 116510843 | LACR_r2607 | - | 23S ribosomal RNA |

2436214 | 2436286 | - | 73 | 116510843 | LACR_t2608 | - | 02 Ala tRNA
|

2436380 | 2437927 | - | 1548 | 116510843 | LACR_r2609 | - | 16S ribosomal RNA |