Материалы:NC 008525

LOCUS NC_008525 1832387 bp DNA circular BCT 31-OCT-2006 DEFINITION Pediococcus pentosaceus ATCC 25745, complete genome. ACCESSION NC_008525 VERSION NC_008525.1 GI:116491818 KEYWORDS . SOURCE Pediococcus pentosaceus ATCC 25745 ORGANISM Pediococcus pentosaceus ATCC 25745 Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Pediococcus. REFERENCE 1 (bases 1 to 1832387) AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B., Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K., Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J., Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B., Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E., Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D., Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D., Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P., Kozyavkin,S., Weimer,B. and Mills,D. TITLE Comparative genomics of the lactic acid bacteria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006) PUBMED 17030793 REFERENCE 2 (bases 1 to 1832387) AUTHORS . CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1832387) AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S., Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S., Makarova,K., Koonin,E., Mills,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc. TITLE Direct Submission JOURNAL Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000422. URL -- http://www.jgi.doe.gov JGI Project ID: 2662186 Source DNA and bacteria available from Jeffery R. Broadbent (broadbnt@cc.usu.edu) Bacteria also available from ATCC: ATCC 25745 Contacts: Jeffery R. Broadbent (broadbnt@cc.usu.edu) James L. Steele (jlsteele@facstaff.wisc.edu) David Mills (damills@ucdavis.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by Kira Makarova and Eugene Koonin Finishing done by Fidelity Systems Inc. (Gaithersburg) URL -- http://www.fidelitysystems.com Project Information available at: http://genome.jgi-psf.org/mic_home.html The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

107547 | 107619 | - | 73 | 116491818 | PEPE_t0098 | - | 02 Ala tRNA
|

116896 | 118475 | + | 1580 | 116491818 | PEPE_r0108 | - | 16S ribosomal RNA |

118704 | 121626 | + | 2923 | 116491818 | PEPE_r0109 | - | 23S ribosomal RNA |

121720 | 121836 | + | 117 | 116491818 | PEPE_r0110 | - | 5S ribosomal RNA |

277878 | 279458 | + | 1581 | 116491818 | PEPE_r0236 | - | 16S ribosomal RNA |

279687 | 282609 | + | 2923 | 116491818 | PEPE_r0237 | - | 23S ribosomal RNA |

282703 | 282819 | + | 117 | 116491818 | PEPE_r0238 | - | 5S ribosomal RNA |

282936 | 283009 | + | 74 | 116491818 | PEPE_t0239 | - | 12 Thr tRNA
|

509466 | 509537 | - | 72 | 116491818 | PEPE_t0456 | - | 11 Arg tRNA
|

600255 | 600623 | - | 369 | 116491818 | PEPE_s0541 | - | tmRNA |

649284 | 649357 | - | 74 | 116491818 | PEPE_t0594 | - | 11 Arg tRNA
|

671638 | 673217 | + | 1580 | 116491818 | PEPE_r0615 | - | 16S ribosomal RNA |

673294 | 673368 | + | 75 | 116491818 | PEPE_t0616 | - | 14 Ile tRNA
|

673374 | 673446 | + | 73 | 116491818 | PEPE_t0617 | - | 02 Ala tRNA
|

673635 | 676557 | + | 2923 | 116491818 | PEPE_r0618 | - | 23S ribosomal RNA |

676652 | 676768 | + | 117 | 116491818 | PEPE_r0619 | - | 5S ribosomal RNA |

676774 | 676846 | + | 73 | 116491818 | PEPE_t0620 | - | 13 Val tRNA
|

676856 | 676928 | + | 73 | 116491818 | PEPE_t0621 | - | 10 Lys tRNA
|

676988 | 677060 | + | 73 | 116491818 | PEPE_t0622 | - | 12 Thr tRNA
|

677071 | 677142 | + | 72 | 116491818 | PEPE_t0623 | - | 01 Gly tRNA
|

677175 | 677260 | + | 86 | 116491818 | PEPE_t0624 | - | 15 Leu tRNA
|

677269 | 677342 | + | 74 | 116491818 | PEPE_t0625 | - | 11 Arg tRNA
|

677352 | 677425 | + | 74 | 116491818 | PEPE_t0626 | - | 03 Pro tRNA
|

677465 | 677538 | + | 74 | 116491818 | PEPE_t0627 | - | 16 Met tRNA
|

677559 | 677632 | + | 74 | 116491818 | PEPE_t0628 | - | 16 Met tRNA
|

677679 | 677768 | + | 90 | 116491818 | PEPE_t0629 | - | 08 Ser tRNA
|

677778 | 677851 | + | 74 | 116491818 | PEPE_t0630 | - | 16 Met tRNA
|

677856 | 677929 | + | 74 | 116491818 | PEPE_t0631 | - | 06 Asp tRNA
|

677935 | 678007 | + | 73 | 116491818 | PEPE_t0632 | - | 17 Phe tRNA
|

678032 | 678102 | + | 71 | 116491818 | PEPE_t0633 | - | 01 Gly tRNA
|

678121 | 678195 | + | 75 | 116491818 | PEPE_t0634 | - | 14 Ile tRNA
|

678199 | 678286 | + | 88 | 116491818 | PEPE_t0635 | - | 08 Ser tRNA
|

678310 | 678384 | + | 75 | 116491818 | PEPE_t0636 | - | 04 Glu tRNA
|

678415 | 678488 | + | 74 | 116491818 | PEPE_t0637 | - | 16 Met tRNA
|

678493 | 678566 | + | 74 | 116491818 | PEPE_t0638 | - | 06 Asp tRNA
|

695336 | 695419 | + | 84 | 116491818 | PEPE_t0656 | - | 15 Leu tRNA
|

705141 | 705214 | + | 74 | 116491818 | PEPE_t0665 | - | 01 Gly tRNA
|

818739 | 818812 | - | 74 | 116491818 | PEPE_t0808 | - | 11 Arg tRNA
|

936650 | 936983 | + | 334 | 116491818 | PEPE_r0935 | - | RNA_RNaseP_classB |

1127365 | 1127452 | + | 88 | 116491818 | PEPE_t1128 | - | 08 Ser tRNA
|

1209541 | 1209611 | - | 71 | 116491818 | PEPE_t1211 | - | 19 Cys tRNA
|

1209696 | 1209779 | - | 84 | 116491818 | PEPE_t1212 | - | 15 Leu tRNA
|

1209827 | 1209899 | - | 73 | 116491818 | PEPE_t1213 | - | 09 His tRNA
|

1209905 | 1209978 | - | 74 | 116491818 | PEPE_t1214 | - | 20 Trp tRNA
|

1210023 | 1210095 | - | 73 | 116491818 | PEPE_t1215 | - | 17 Phe tRNA
|

1210118 | 1210191 | - | 74 | 116491818 | PEPE_t1216 | - | 06 Asp tRNA
|

1210210 | 1210282 | - | 73 | 116491818 | PEPE_t1217 | - | 13 Val tRNA
|

1210290 | 1210361 | - | 72 | 116491818 | PEPE_t1218 | - | 04 Glu tRNA
|

1210380 | 1210471 | - | 92 | 116491818 | PEPE_t1219 | - | 08 Ser tRNA
|

1210484 | 1210556 | - | 73 | 116491818 | PEPE_t1220 | - | 07 Asn tRNA
|

1210562 | 1210679 | - | 118 | 116491818 | PEPE_r1221 | - | 5S ribosomal RNA |

1210773 | 1213695 | - | 2923 | 116491818 | PEPE_r1222 | - | 23S ribosomal RNA |

1213924 | 1215503 | - | 1580 | 116491818 | PEPE_r1223 | - | 16S ribosomal RNA |

1330717 | 1330789 | + | 73 | 116491818 | PEPE_t1341 | - | 04 Glu tRNA
|

1330798 | 1330873 | + | 76 | 116491818 | PEPE_t1342 | - | 05 Gln tRNA
|

1409267 | 1409340 | - | 74 | 116491818 | PEPE_t1429 | - | 03 Pro tRNA
|

1409431 | 1409504 | - | 74 | 116491818 | PEPE_t1430 | - | 11 Arg tRNA
|

1409526 | 1409597 | - | 72 | 116491818 | PEPE_t1431 | - | 01 Gly tRNA
|

1409602 | 1409674 | - | 73 | 116491818 | PEPE_t1432 | - | 12 Thr tRNA
|

1409687 | 1409768 | - | 82 | 116491818 | PEPE_t1433 | - | 15 Leu tRNA
|

1409811 | 1409883 | - | 73 | 116491818 | PEPE_t1434 | - | 13 Val tRNA
|

1487116 | 1487204 | - | 89 | 116491818 | PEPE_t1519 | - | 15 Leu tRNA
|

1499426 | 1499497 | - | 72 | 116491818 | PEPE_t1530 | - | 05 Gln tRNA
|

1499501 | 1499586 | - | 86 | 116491818 | PEPE_t1531 | - | 18 Tyr tRNA
|

1502655 | 1502727 | - | 73 | 116491818 | PEPE_t1535 | - | 12 Thr tRNA
|

1502776 | 1502848 | - | 73 | 116491818 | PEPE_t1536 | - | 07 Asn tRNA
|

1502854 | 1502971 | - | 118 | 116491818 | PEPE_r1537 | - | 5S ribosomal RNA |

1503065 | 1505987 | - | 2923 | 116491818 | PEPE_r1538 | - | 23S ribosomal RNA |

1506176 | 1506248 | - | 73 | 116491818 | PEPE_t1539 | - | 02 Ala tRNA
|

1506254 | 1506328 | - | 75 | 116491818 | PEPE_t1540 | - | 14 Ile tRNA
|

1506405 | 1507984 | - | 1580 | 116491818 | PEPE_r1541 | - | 16S ribosomal RNA |

1777594 | 1777669 | + | 76 | 116491818 | PEPE_t1798 | - | 10 Lys tRNA
|