Материалы:NC 009617

LOCUS NC_009617 6000632 bp DNA circular BCT 29-JUN-2007 DEFINITION Clostridium beijerinckii NCIMB 8052, complete genome. ACCESSION NC_009617 VERSION NC_009617.1 GI:150014892 KEYWORDS . SOURCE Clostridium beijerinckii NCIMB 8052 ORGANISM Clostridium beijerinckii NCIMB 8052 Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. REFERENCE 1 (bases 1 to 6000632) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Tapia,R., Brainard,J., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bennet,G., Cann,I., Chen,J.-S., Contreras,A.L., Jones,D., Kashket,E., Mitchell,W., Stoddard,S., Schwarz,W., Qureshi,N., Young,M., Shi,Z., Ezeji,T., White,B., Blaschek,H. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Clostridium beijerinckii NCIMB 8052 JOURNAL Unpublished REFERENCE 2 (bases 1 to 6000632) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-JUN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6000632) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Tapia,R., Brainard,J., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bennet,G., Cann,I., Chen,J.-S., Contreras,A.L., Jones,D., Kashket,E., Mitchell,W., Stoddard,S., Schwarz,W., Qureshi,N., Young,M., Shi,Z., Ezeji,T., White,B., Blaschek,H. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (06-JUN-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000721. URL -- http://www.jgi.doe.gov JGI Project ID: 3634512 Source DNA and bacteria available from Hans Blaschek (blaschek@uiuc.edu) Bacteria available from NCIMB: NCIMB 8052 Contacts: Hans Blaschek (blaschek@uiuc.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

9623 | 11127 | + | 1505 | 150014892 | Cbei_R0001 | - | 16S ribosomal RNA |

11348 | 14256 | + | 2909 | 150014892 | Cbei_R0002 | - | 23S ribosomal RNA |

14369 | 14484 | + | 116 | 150014892 | Cbei_R0003 | - | 5S ribosomal RNA |

14528 | 14604 | + | 77 | 150014892 | Cbei_R0004 | - | 16 Met tRNA
|

14606 | 14681 | + | 76 | 150014892 | Cbei_R0005 | - | 02 Ala tRNA
|

17570 | 17660 | + | 91 | 150014892 | Cbei_R0006 | - | 08 Ser tRNA
|

17691 | 17781 | + | 91 | 150014892 | Cbei_R0007 | - | 08 Ser tRNA
|

18025 | 18115 | + | 91 | 150014892 | Cbei_R0008 | - | 08 Ser tRNA
|

18134 | 18224 | + | 91 | 150014892 | Cbei_R0009 | - | 08 Ser tRNA
|

29427 | 29501 | + | 75 | 150014892 | Cbei_R0010 | - | 11 Arg tRNA
|

121863 | 121951 | + | 89 | 150014892 | Cbei_R0011 | - | 15 Leu tRNA
|

121973 | 122048 | + | 76 | 150014892 | Cbei_R0012 | - | 16 Met tRNA
|

122056 | 122132 | + | 77 | 150014892 | Cbei_R0013 | - | 16 Met tRNA
|

122139 | 122227 | + | 89 | 150014892 | Cbei_R0014 | - | 15 Leu tRNA
|

122249 | 122324 | + | 76 | 150014892 | Cbei_R0015 | - | 16 Met tRNA
|

122332 | 122408 | + | 77 | 150014892 | Cbei_R0016 | - | 16 Met tRNA
|

122415 | 122503 | + | 89 | 150014892 | Cbei_R0017 | - | 15 Leu tRNA
|

122525 | 122600 | + | 76 | 150014892 | Cbei_R0018 | - | 16 Met tRNA
|

122671 | 122759 | + | 89 | 150014892 | Cbei_R0019 | - | 15 Leu tRNA
|

122781 | 122856 | + | 76 | 150014892 | Cbei_R0020 | - | 16 Met tRNA
|

136705 | 136779 | + | 75 | 150014892 | Cbei_R0021 | - | 07 Asn tRNA
|

137017 | 137091 | + | 75 | 150014892 | Cbei_R0022 | - | 07 Asn tRNA
|

137531 | 137605 | + | 75 | 150014892 | Cbei_R0023 | - | 07 Asn tRNA
|

142453 | 143957 | + | 1505 | 150014892 | Cbei_R0024 | - | 16S ribosomal RNA |

144098 | 144173 | + | 76 | 150014892 | Cbei_R0025 | - | 02 Ala tRNA
|

144177 | 144253 | + | 77 | 150014892 | Cbei_R0026 | - | 14 Ile tRNA
|

144366 | 147274 | + | 2909 | 150014892 | Cbei_R0027 | - | 23S ribosomal RNA |

147348 | 147463 | + | 116 | 150014892 | Cbei_R0028 | - | 5S ribosomal RNA |

147468 | 147543 | + | 76 | 150014892 | Cbei_R0029 | - | 17 Phe tRNA
|

147548 | 147622 | + | 75 | 150014892 | Cbei_R0030 | - | 19 Cys tRNA
|

174419 | 174494 | + | 76 | 150014892 | Cbei_R0031 | - | 12 Thr tRNA
|

354960 | 355044 | + | 85 | 150014892 | Cbei_R0032 | - | 15 Leu tRNA
|

355049 | 355123 | + | 75 | 150014892 | Cbei_R0033 | - | 01 Gly tRNA
|

431481 | 431556 | + | 76 | 150014892 | Cbei_R0034 | - | 03 Pro tRNA
|

431574 | 431647 | + | 74 | 150014892 | Cbei_R0035 | - | 01 Gly tRNA
|

431798 | 431874 | + | 77 | 150014892 | Cbei_R0036 | - | 11 Arg tRNA
|

431881 | 431956 | + | 76 | 150014892 | Cbei_R0037 | - | 03 Pro tRNA
|

431973 | 432046 | + | 74 | 150014892 | Cbei_R0038 | - | 01 Gly tRNA
|

432082 | 432158 | + | 77 | 150014892 | Cbei_R0039 | - | 11 Arg tRNA
|

432164 | 432239 | + | 76 | 150014892 | Cbei_R0040 | - | 09 His tRNA
|

432243 | 432317 | + | 75 | 150014892 | Cbei_R0041 | - | 05 Gln tRNA
|

432325 | 432400 | + | 76 | 150014892 | Cbei_R0042 | - | 10 Lys tRNA
|

432418 | 432502 | + | 85 | 150014892 | Cbei_R0043 | - | 15 Leu tRNA
|

432508 | 432582 | + | 75 | 150014892 | Cbei_R0044 | - | 01 Gly tRNA
|

432606 | 432679 | + | 74 | 150014892 | Cbei_R0045 | - | 01 Gly tRNA
|

432685 | 432760 | + | 76 | 150014892 | Cbei_R0046 | - | 10 Lys tRNA
|

432818 | 432892 | + | 75 | 150014892 | Cbei_R0047 | - | 05 Gln tRNA
|

432900 | 432975 | + | 76 | 150014892 | Cbei_R0048 | - | 10 Lys tRNA
|

432995 | 433079 | + | 85 | 150014892 | Cbei_R0049 | - | 15 Leu tRNA
|

433085 | 433159 | + | 75 | 150014892 | Cbei_R0050 | - | 01 Gly tRNA
|

433183 | 433256 | + | 74 | 150014892 | Cbei_R0051 | - | 01 Gly tRNA
|

433303 | 433379 | + | 77 | 150014892 | Cbei_R0052 | - | 11 Arg tRNA
|

446133 | 447637 | + | 1505 | 150014892 | Cbei_R0053 | - | 16S ribosomal RNA |

447774 | 447850 | + | 77 | 150014892 | Cbei_R0054 | - | 14 Ile tRNA
|

447938 | 450846 | + | 2909 | 150014892 | Cbei_R0055 | - | 23S ribosomal RNA |

450919 | 450993 | + | 75 | 150014892 | Cbei_R0056 | - | 07 Asn tRNA
|

515496 | 515580 | + | 85 | 150014892 | Cbei_R0057 | - | 18 Tyr tRNA
|

515590 | 515665 | + | 76 | 150014892 | Cbei_R0058 | - | 13 Val tRNA
|

515693 | 515767 | + | 75 | 150014892 | Cbei_R0059 | - | 12 Thr tRNA
|

515780 | 515864 | + | 85 | 150014892 | Cbei_R0060 | - | 18 Tyr tRNA
|

515874 | 515949 | + | 76 | 150014892 | Cbei_R0061 | - | 13 Val tRNA
|

515980 | 516054 | + | 75 | 150014892 | Cbei_R0062 | - | 12 Thr tRNA
|

516067 | 516151 | + | 85 | 150014892 | Cbei_R0063 | - | 18 Tyr tRNA
|

568733 | 568807 | + | 75 | 150014892 | Cbei_R0064 | - | 20 Trp tRNA
|

570814 | 570888 | + | 75 | 150014892 | Cbei_R0065 | - | 20 Trp tRNA
|

805096 | 805452 | + | 357 | 150014892 | Cbei_R0066 | - | tmRNA |

924919 | 926423 | + | 1505 | 150014892 | Cbei_R0067 | - | 16S ribosomal RNA |

926564 | 926639 | + | 76 | 150014892 | Cbei_R0068 | - | 02 Ala tRNA
|

926762 | 929670 | + | 2909 | 150014892 | Cbei_R0069 | - | 23S ribosomal RNA |

929807 | 929922 | + | 116 | 150014892 | Cbei_R0070 | - | 5S ribosomal RNA |

973865 | 973950 | + | 86 | 150014892 | Cbei_R0071 | - | 15 Leu tRNA
|

1039601 | 1039892 | + | 292 | 150014892 | Cbei_R0072 | - | RNAseP RNA |

1735288 | 1735363 | + | 76 | 150014892 | Cbei_R0073 | - | 09 His tRNA
|

1735367 | 1735441 | + | 75 | 150014892 | Cbei_R0074 | - | 05 Gln tRNA
|

1735448 | 1735523 | + | 76 | 150014892 | Cbei_R0075 | - | 10 Lys tRNA
|

1765271 | 1765357 | - | 87 | 150014892 | Cbei_R0076 | - | 15 Leu tRNA
|

2031255 | 2032759 | + | 1505 | 150014892 | Cbei_R0077 | - | 16S ribosomal RNA |

2033276 | 2036186 | + | 2911 | 150014892 | Cbei_R0078 | - | 23S ribosomal RNA |

2036440 | 2036555 | + | 116 | 150014892 | Cbei_R0079 | - | 5S ribosomal RNA |

2220562 | 2220662 | - | 101 | 150014892 | Cbei_R0080 | - | SRP RNA; RNA component of signal recognition particle |

2254715 | 2256219 | + | 1505 | 150014892 | Cbei_R0081 | - | 16S ribosomal RNA |

2256566 | 2259476 | + | 2911 | 150014892 | Cbei_R0082 | - | 23S ribosomal RNA |

2259548 | 2259622 | + | 75 | 150014892 | Cbei_R0083 | - | 07 Asn tRNA
|

2259628 | 2259743 | + | 116 | 150014892 | Cbei_R0084 | - | 5S ribosomal RNA |

2266370 | 2267874 | + | 1505 | 150014892 | Cbei_R0085 | - | 16S ribosomal RNA |

2268095 | 2271006 | + | 2912 | 150014892 | Cbei_R0086 | - | 23S ribosomal RNA |

2271078 | 2271152 | + | 75 | 150014892 | Cbei_R0087 | - | 07 Asn tRNA
|

2271158 | 2271273 | + | 116 | 150014892 | Cbei_R0088 | - | 5S ribosomal RNA |

2672602 | 2672676 | - | 75 | 150014892 | Cbei_R0089 | - | 04 Glu tRNA
|

3398860 | 3398934 | - | 75 | 150014892 | Cbei_R0090 | - | 04 Glu tRNA
|

3398954 | 3399028 | - | 75 | 150014892 | Cbei_R0091 | - | 12 Thr tRNA
|

3399044 | 3399120 | - | 77 | 150014892 | Cbei_R0092 | - | 06 Asp tRNA
|

3399127 | 3399202 | - | 76 | 150014892 | Cbei_R0093 | - | 17 Phe tRNA
|

3399207 | 3399322 | - | 116 | 150014892 | Cbei_R0094 | - | 5S ribosomal RNA |

3399464 | 3402373 | - | 2910 | 150014892 | Cbei_R0095 | - | 23S ribosomal RNA |

3402720 | 3404224 | - | 1505 | 150014892 | Cbei_R0096 | - | 16S ribosomal RNA |

3549338 | 3549425 | - | 88 | 150014892 | Cbei_R0097 | - | 14 Ile tRNA
|

3958886 | 3958961 | - | 76 | 150014892 | Cbei_R0098 | - | 10 Lys tRNA
|

3959040 | 3959115 | - | 76 | 150014892 | Cbei_R0099 | - | 09 His tRNA
|

3959122 | 3959198 | - | 77 | 150014892 | Cbei_R0100 | - | 11 Arg tRNA
|

3959234 | 3959307 | - | 74 | 150014892 | Cbei_R0101 | - | 01 Gly tRNA
|

4542982 | 4543097 | - | 116 | 150014892 | Cbei_R0102 | - | 5S ribosomal RNA |

4543173 | 4546085 | - | 2913 | 150014892 | Cbei_R0103 | - | 23S ribosomal RNA |

4546432 | 4547936 | - | 1505 | 150014892 | Cbei_R0104 | - | 16S ribosomal RNA |

5724399 | 5724474 | + | 76 | 150014892 | Cbei_R0105 | - | 03 Pro tRNA
|

5728021 | 5728096 | - | 76 | 150014892 | Cbei_R0106 | - | 17 Phe tRNA
|

5728101 | 5728216 | - | 116 | 150014892 | Cbei_R0107 | - | 5S ribosomal RNA |

5737922 | 5737997 | - | 76 | 150014892 | Cbei_R0108 | - | 02 Ala tRNA
|

5737999 | 5738075 | - | 77 | 150014892 | Cbei_R0109 | - | 16 Met tRNA
|

5738119 | 5738234 | - | 116 | 150014892 | Cbei_R0110 | - | 5S ribosomal RNA |

5738310 | 5741220 | - | 2911 | 150014892 | Cbei_R0111 | - | 23S ribosomal RNA |

5741441 | 5742945 | - | 1505 | 150014892 | Cbei_R0112 | - | 16S ribosomal RNA |

5745497 | 5745572 | - | 76 | 150014892 | Cbei_R0113 | - | 10 Lys tRNA
|

5745577 | 5745692 | - | 116 | 150014892 | Cbei_R0114 | - | 5S ribosomal RNA |

5747092 | 5747167 | - | 76 | 150014892 | Cbei_R0115 | - | 10 Lys tRNA
|

5747174 | 5747289 | - | 116 | 150014892 | Cbei_R0116 | - | 5S ribosomal RNA |

5747365 | 5750273 | - | 2909 | 150014892 | Cbei_R0117 | - | 23S ribosomal RNA |

5750494 | 5751998 | - | 1505 | 150014892 | Cbei_R0118 | - | 16S ribosomal RNA |

5764406 | 5764521 | - | 116 | 150014892 | Cbei_R0119 | - | 5S ribosomal RNA |

5764658 | 5767566 | - | 2909 | 150014892 | Cbei_R0120 | - | 23S ribosomal RNA |

5767787 | 5769291 | - | 1505 | 150014892 | Cbei_R0121 | - | 16S ribosomal RNA |

5770404 | 5770519 | - | 116 | 150014892 | Cbei_R0122 | - | 5S ribosomal RNA |

5770595 | 5773503 | - | 2909 | 150014892 | Cbei_R0123 | - | 23S ribosomal RNA |

5773724 | 5775228 | - | 1505 | 150014892 | Cbei_R0124 | - | 16S ribosomal RNA |

5829413 | 5829513 | - | 101 | 150014892 | Cbei_R0125 | - | SRP RNA; RNA component of signal recognition particle |

5886417 | 5886506 | - | 90 | 150014892 | Cbei_R0126 | - | 08 Ser tRNA
|

5911068 | 5911142 | - | 75 | 150014892 | Cbei_R0127 | - | 11 Arg tRNA
|

5928131 | 5928246 | - | 116 | 150014892 | Cbei_R0128 | - | 5S ribosomal RNA |

5928322 | 5931233 | - | 2912 | 150014892 | Cbei_R0129 | - | 23S ribosomal RNA |

5931454 | 5932958 | - | 1505 | 150014892 | Cbei_R0130 | - | 16S ribosomal RNA |

5967624 | 5967700 | - | 77 | 150014892 | Cbei_R0131 | - | 06 Asp tRNA
|

5967707 | 5967782 | - | 76 | 150014892 | Cbei_R0132 | - | 13 Val tRNA
|

5967799 | 5967873 | - | 75 | 150014892 | Cbei_R0133 | - | 04 Glu tRNA
|

5967903 | 5967977 | - | 75 | 150014892 | Cbei_R0134 | - | 12 Thr tRNA
|

5967988 | 5968064 | - | 77 | 150014892 | Cbei_R0135 | - | 06 Asp tRNA
|

5968071 | 5968146 | - | 76 | 150014892 | Cbei_R0136 | - | 13 Val tRNA
|

5968162 | 5968236 | - | 75 | 150014892 | Cbei_R0137 | - | 04 Glu tRNA
|

5968266 | 5968340 | - | 75 | 150014892 | Cbei_R0138 | - | 12 Thr tRNA
|

5968351 | 5968427 | - | 77 | 150014892 | Cbei_R0139 | - | 06 Asp tRNA
|

5968434 | 5968509 | - | 76 | 150014892 | Cbei_R0140 | - | 13 Val tRNA
|

5968526 | 5968600 | - | 75 | 150014892 | Cbei_R0141 | - | 04 Glu tRNA
|