Материалы:NC 007298

LOCUS NC_007298 4501104 bp DNA circular BCT 04-APR-2006 DEFINITION Dechloromonas aromatica RCB, complete genome. ACCESSION NC_007298 VERSION NC_007298.1 GI:71905642 KEYWORDS . SOURCE Dechloromonas aromatica RCB ORGANISM Dechloromonas aromatica RCB Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Dechloromonas. REFERENCE 1 (bases 1 to 4501104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Trong,S., Kellar,K., Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Dechloromonas aromatica RCB JOURNAL Unpublished REFERENCE 2 (bases 1 to 4501104) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4501104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Trong,S., Kellar,K., Schmutz,J., Larimer,F., Land,M., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (04-AUG-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000089. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from John Coates (jcoates@micro.siu.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

76243 | 76316 | + | 74 | 71905642 | Daro_R0001 | - | 01 Gly tRNA
|

76851 | 78380 | + | 1530 | 71905642 | Daro_R0002 | - | 16S ribosomal RNA |

78441 | 78517 | + | 77 | 71905642 | Daro_R0003 | - | 14 Ile tRNA
|

78529 | 78604 | + | 76 | 71905642 | Daro_R0004 | - | 02 Ala tRNA
|

78816 | 81698 | + | 2883 | 71905642 | Daro_R0005 | - | 23S ribosomal RNA |

81796 | 81909 | + | 114 | 71905642 | Daro_R0006 | - | 5S ribosomal RNA |

200986 | 201061 | - | 76 | 71905642 | Daro_R0007 | - | 16 Met tRNA
|

201154 | 201229 | - | 76 | 71905642 | Daro_R0008 | - | 10 Lys tRNA
|

201248 | 201323 | - | 76 | 71905642 | Daro_R0009 | - | 10 Lys tRNA
|

347382 | 347466 | + | 85 | 71905642 | Daro_R0010 | - | 18 Tyr tRNA
|

347506 | 347579 | + | 74 | 71905642 | Daro_R0011 | - | 01 Gly tRNA
|

347610 | 347684 | + | 75 | 71905642 | Daro_R0012 | - | 12 Thr tRNA
|

348992 | 349067 | + | 76 | 71905642 | Daro_R0013 | - | 20 Trp tRNA
|

475156 | 475231 | + | 76 | 71905642 | Daro_R0014 | - | 17 Phe tRNA
|

496667 | 496742 | + | 76 | 71905642 | Daro_R0015 | - | 02 Ala tRNA
|

575391 | 575719 | + | 329 | 71905642 | Daro_R0016 | - | RNA component of RNaseP |

586037 | 586113 | - | 77 | 71905642 | Daro_R0017 | - | 16 Met tRNA
|

715274 | 716803 | + | 1530 | 71905642 | Daro_R0018 | - | 16S ribosomal RNA |

716864 | 716940 | + | 77 | 71905642 | Daro_R0019 | - | 14 Ile tRNA
|

716952 | 717027 | + | 76 | 71905642 | Daro_R0020 | - | 02 Ala tRNA
|

717239 | 720121 | + | 2883 | 71905642 | Daro_R0021 | - | 23S ribosomal RNA |

720219 | 720332 | + | 114 | 71905642 | Daro_R0022 | - | 5S ribosomal RNA |

724805 | 724881 | + | 77 | 71905642 | Daro_R0023 | - | 03 Pro tRNA
|

778283 | 778358 | + | 76 | 71905642 | Daro_R0024 | - | 12 Thr tRNA
|

855858 | 855931 | + | 74 | 71905642 | Daro_R0025 | - | 12 Thr tRNA
|

870227 | 870302 | + | 76 | 71905642 | Daro_R0026 | - | 16 Met tRNA
|

870619 | 872148 | + | 1530 | 71905642 | Daro_R0027 | - | 16S ribosomal RNA |

872209 | 872285 | + | 77 | 71905642 | Daro_R0028 | - | 14 Ile tRNA
|

872297 | 872372 | + | 76 | 71905642 | Daro_R0029 | - | 02 Ala tRNA
|

872584 | 875466 | + | 2883 | 71905642 | Daro_R0030 | - | 23S ribosomal RNA |

875564 | 875677 | + | 114 | 71905642 | Daro_R0031 | - | 5S ribosomal RNA |

875842 | 875942 | + | 101 | 71905642 | Daro_R0032 | - | SRP RNA, RNA component of signal recognition particle |

908466 | 908540 | - | 75 | 71905642 | Daro_R0033 | - | 11 Arg tRNA
|

925627 | 925714 | + | 88 | 71905642 | Daro_R0034 | - | 08 Ser tRNA
|

1029310 | 1029394 | + | 85 | 71905642 | Daro_R0035 | - | 15 Leu tRNA
|

1137633 | 1137708 | + | 76 | 71905642 | Daro_R0036 | - | 07 Asn tRNA
|

1137715 | 1137790 | + | 76 | 71905642 | Daro_R0037 | - | 01 Gly tRNA
|

1142712 | 1142787 | + | 76 | 71905642 | Daro_R0038 | - | 01 Gly tRNA
|

1227775 | 1229304 | + | 1530 | 71905642 | Daro_R0039 | - | 16S ribosomal RNA |

1229365 | 1229441 | + | 77 | 71905642 | Daro_R0040 | - | 14 Ile tRNA
|

1229453 | 1229528 | + | 76 | 71905642 | Daro_R0041 | - | 02 Ala tRNA
|

1229740 | 1232622 | + | 2883 | 71905642 | Daro_R0042 | - | 23S ribosomal RNA |

1232720 | 1232833 | + | 114 | 71905642 | Daro_R0043 | - | 5S ribosomal RNA |

1413291 | 1413378 | + | 88 | 71905642 | Daro_R0044 | - | 08 Ser tRNA
|

1437879 | 1437955 | - | 77 | 71905642 | Daro_R0045 | - | 06 Asp tRNA
|

1437983 | 1438058 | - | 76 | 71905642 | Daro_R0046 | - | 04 Glu tRNA
|

1438097 | 1438172 | - | 76 | 71905642 | Daro_R0047 | - | 02 Ala tRNA
|

1438258 | 1438334 | - | 77 | 71905642 | Daro_R0048 | - | 06 Asp tRNA
|

1438362 | 1438437 | - | 76 | 71905642 | Daro_R0049 | - | 04 Glu tRNA
|

1438461 | 1438536 | - | 76 | 71905642 | Daro_R0050 | - | 02 Ala tRNA
|

1440091 | 1440165 | + | 75 | 71905642 | Daro_R0051 | - | 13 Val tRNA
|

1763155 | 1763245 | + | 91 | 71905642 | Daro_R0052 | - | 08 Ser tRNA
|

1842121 | 1842196 | - | 76 | 71905642 | Daro_R0053 | - | 13 Val tRNA
|

1848603 | 1848678 | + | 76 | 71905642 | Daro_R0054 | - | 09 His tRNA
|

1943197 | 1943273 | + | 77 | 71905642 | Daro_R0055 | - | 11 Arg tRNA
|

1943321 | 1943397 | + | 77 | 71905642 | Daro_R0056 | - | 11 Arg tRNA
|

1944928 | 1945019 | - | 92 | 71905642 | Daro_R0057 | - | Sec tRNA |

2154287 | 2154362 | - | 76 | 71905642 | Daro_R0058 | - | 07 Asn tRNA
|

2190666 | 2190741 | + | 76 | 71905642 | Daro_R0059 | - | 01 Gly tRNA
|

2190806 | 2190879 | + | 74 | 71905642 | Daro_R0060 | - | 19 Cys tRNA
|

2190886 | 2190961 | + | 76 | 71905642 | Daro_R0061 | - | 01 Gly tRNA
|

2191033 | 2191118 | + | 86 | 71905642 | Daro_R0062 | - | 15 Leu tRNA
|

2524961 | 2525037 | - | 77 | 71905642 | Daro_R0063 | - | 06 Asp tRNA
|

2646978 | 2647054 | - | 77 | 71905642 | Daro_R0064 | - | 11 Arg tRNA
|

2647078 | 2647154 | - | 77 | 71905642 | Daro_R0065 | - | 03 Pro tRNA
|

2711657 | 2711749 | - | 93 | 71905642 | Daro_R0066 | - | 08 Ser tRNA
|

2867191 | 2867267 | - | 77 | 71905642 | Daro_R0067 | - | 03 Pro tRNA
|

2874781 | 2874857 | - | 77 | 71905642 | Daro_R0068 | - | 13 Val tRNA
|

2897901 | 2897985 | - | 85 | 71905642 | Daro_R0069 | - | 15 Leu tRNA
|

2954257 | 2954332 | + | 76 | 71905642 | Daro_R0070 | - | 13 Val tRNA
|

2986099 | 2986173 | + | 75 | 71905642 | Daro_R0071 | - | 12 Thr tRNA
|

3211321 | 3211405 | + | 85 | 71905642 | Daro_R0072 | - | 15 Leu tRNA
|

3211576 | 3211660 | + | 85 | 71905642 | Daro_R0073 | - | 15 Leu tRNA
|

3503826 | 3503909 | - | 84 | 71905642 | Daro_R0074 | - | 15 Leu tRNA
|

3527925 | 3528009 | + | 85 | 71905642 | Daro_R0075 | - | 15 Leu tRNA
|

3778248 | 3778324 | - | 77 | 71905642 | Daro_R0076 | - | 16 Met tRNA
|

4008786 | 4008862 | + | 77 | 71905642 | Daro_R0077 | - | 05 Gln tRNA
|

4026866 | 4026942 | - | 77 | 71905642 | Daro_R0078 | - | 11 Arg tRNA
|

4389925 | 4390206 | - | 282 | 71905642 | Daro_R0079 | - | tmRNA |