Материалы:NC 009441

LOCUS NC_009441 6096872 bp DNA circular BCT 14-AUG-2007 DEFINITION Flavobacterium johnsoniae UW101, complete genome. ACCESSION NC_009441 VERSION NC_009441.1 GI:146297766 KEYWORDS . SOURCE Flavobacterium johnsoniae UW101 ORGANISM Flavobacterium johnsoniae UW101 Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales; Flavobacteriaceae; Flavobacterium. REFERENCE 1 (bases 1 to 6096872) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Xie,G., McBride,M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Flavobacterium johnsoniae UW101 JOURNAL Unpublished REFERENCE 2 (bases 1 to 6096872) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6096872) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Xie,G., McBride,M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (24-APR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000685. URL -- http://www.jgi.doe.gov JGI Project ID: 4000268 Source DNA available from Mark McBride (mcbride@uwm.edu) Bacteria available from ATCC: ATCC 17061 Contacts: Mark McBride (mcbride@uwm.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

24130 | 24249 | - | 120 | 146297766 | Fjoh_R0001 | - | 5S ribosomal RNA |

24406 | 27279 | - | 2874 | 146297766 | Fjoh_R0002 | - | 23S ribosomal RNA |

27468 | 27544 | - | 77 | 146297766 | Fjoh_R0003 | - | 02 Ala tRNA
|

27685 | 27758 | - | 74 | 146297766 | Fjoh_R0004 | - | 14 Ile tRNA
|

27883 | 29401 | - | 1519 | 146297766 | Fjoh_R0005 | - | 16S ribosomal RNA |

59185 | 59260 | + | 76 | 146297766 | Fjoh_R0006 | - | 10 Lys tRNA
|

59298 | 59373 | + | 76 | 146297766 | Fjoh_R0007 | - | 10 Lys tRNA
|

59415 | 59497 | + | 83 | 146297766 | Fjoh_R0008 | - | 15 Leu tRNA
|

60334 | 60409 | + | 76 | 146297766 | Fjoh_R0009 | - | 10 Lys tRNA
|

149554 | 149630 | + | 77 | 146297766 | Fjoh_R0010 | - | 16 Met tRNA
|

210753 | 210830 | + | 78 | 146297766 | Fjoh_R0011 | - | 03 Pro tRNA
|

285239 | 285315 | - | 77 | 146297766 | Fjoh_R0012 | - | 12 Thr tRNA
|

285421 | 285497 | - | 77 | 146297766 | Fjoh_R0013 | - | 12 Thr tRNA
|

479336 | 479413 | + | 78 | 146297766 | Fjoh_R0014 | - | 13 Val tRNA
|

500470 | 500589 | - | 120 | 146297766 | Fjoh_R0015 | - | 5S ribosomal RNA |

500746 | 503619 | - | 2874 | 146297766 | Fjoh_R0016 | - | 23S ribosomal RNA |

503808 | 503884 | - | 77 | 146297766 | Fjoh_R0017 | - | 02 Ala tRNA
|

504025 | 504098 | - | 74 | 146297766 | Fjoh_R0018 | - | 14 Ile tRNA
|

504223 | 505741 | - | 1519 | 146297766 | Fjoh_R0019 | - | 16S ribosomal RNA |

636553 | 636629 | + | 77 | 146297766 | Fjoh_R0020 | - | 02 Ala tRNA
|

717349 | 717422 | - | 74 | 146297766 | Fjoh_R0021 | - | 16 Met tRNA
|

1158187 | 1158260 | + | 74 | 146297766 | Fjoh_R0022 | - | Xaa tRNA |

1273954 | 1274033 | - | 80 | 146297766 | Fjoh_R0023 | - | 15 Leu tRNA
|

1309065 | 1309138 | - | 74 | 146297766 | Fjoh_R0024 | - | 07 Asn tRNA
|

1309174 | 1309250 | - | 77 | 146297766 | Fjoh_R0025 | - | 07 Asn tRNA
|

1466584 | 1466673 | + | 90 | 146297766 | Fjoh_R0026 | - | 08 Ser tRNA
|

1544677 | 1544753 | + | 77 | 146297766 | Fjoh_R0027 | - | 06 Asp tRNA
|

1545349 | 1545425 | + | 77 | 146297766 | Fjoh_R0028 | - | 06 Asp tRNA
|

1555298 | 1555382 | - | 85 | 146297766 | Fjoh_R0029 | - | 15 Leu tRNA
|

1617260 | 1617335 | - | 76 | 146297766 | Fjoh_R0030 | - | 17 Phe tRNA
|

1877676 | 1877746 | + | 71 | 146297766 | Fjoh_R0031 | - | 05 Gln tRNA
|

1877856 | 1877926 | + | 71 | 146297766 | Fjoh_R0032 | - | 05 Gln tRNA
|

1997996 | 1998071 | + | 76 | 146297766 | Fjoh_R0033 | - | 01 Gly tRNA
|

1998083 | 1998171 | + | 89 | 146297766 | Fjoh_R0034 | - | 15 Leu tRNA
|

2049396 | 2049471 | + | 76 | 146297766 | Fjoh_R0035 | - | 01 Gly tRNA
|

2049565 | 2049637 | + | 73 | 146297766 | Fjoh_R0036 | - | 01 Gly tRNA
|

2099953 | 2100026 | + | 74 | 146297766 | Fjoh_R0037 | - | 11 Arg tRNA
|

2152539 | 2152614 | - | 76 | 146297766 | Fjoh_R0038 | - | 16 Met tRNA
|

2161302 | 2161376 | - | 75 | 146297766 | Fjoh_R0039 | - | 04 Glu tRNA
|

2163372 | 2163447 | - | 76 | 146297766 | Fjoh_R0040 | - | 16 Met tRNA
|

2238456 | 2238532 | + | 77 | 146297766 | Fjoh_R0041 | - | 12 Thr tRNA
|

2238589 | 2238672 | + | 84 | 146297766 | Fjoh_R0042 | - | 18 Tyr tRNA
|

2238761 | 2238835 | + | 75 | 146297766 | Fjoh_R0043 | - | 12 Thr tRNA
|

2240138 | 2240211 | + | 74 | 146297766 | Fjoh_R0044 | - | 20 Trp tRNA
|

2304220 | 2305738 | + | 1519 | 146297766 | Fjoh_R0045 | - | 16S ribosomal RNA |

2305862 | 2305935 | + | 74 | 146297766 | Fjoh_R0046 | - | 14 Ile tRNA
|

2306076 | 2306152 | + | 77 | 146297766 | Fjoh_R0047 | - | 02 Ala tRNA
|

2306342 | 2309215 | + | 2874 | 146297766 | Fjoh_R0048 | - | 23S ribosomal RNA |

2309372 | 2309491 | + | 120 | 146297766 | Fjoh_R0049 | - | 5S ribosomal RNA |

2543534 | 2543621 | - | 88 | 146297766 | Fjoh_R0050 | - | 08 Ser tRNA
|

2544889 | 2546407 | + | 1519 | 146297766 | Fjoh_R0051 | - | 16S ribosomal RNA |

2546531 | 2546604 | + | 74 | 146297766 | Fjoh_R0052 | - | 14 Ile tRNA
|

2546745 | 2546821 | + | 77 | 146297766 | Fjoh_R0053 | - | 02 Ala tRNA
|

2547011 | 2549884 | + | 2874 | 146297766 | Fjoh_R0054 | - | 23S ribosomal RNA |

2550041 | 2550160 | + | 120 | 146297766 | Fjoh_R0055 | - | 5S ribosomal RNA |

2551831 | 2551918 | - | 88 | 146297766 | Fjoh_R0056 | - | 08 Ser tRNA
|

3263822 | 3265340 | + | 1519 | 146297766 | Fjoh_R0057 | - | 16S ribosomal RNA |

3265464 | 3265537 | + | 74 | 146297766 | Fjoh_R0058 | - | 14 Ile tRNA
|

3265678 | 3265754 | + | 77 | 146297766 | Fjoh_R0059 | - | 02 Ala tRNA
|

3265944 | 3268817 | + | 2874 | 146297766 | Fjoh_R0060 | - | 23S ribosomal RNA |

3268974 | 3269093 | + | 120 | 146297766 | Fjoh_R0061 | - | 5S ribosomal RNA |

3269156 | 3269228 | + | 73 | 146297766 | Fjoh_R0062 | - | 17 Phe tRNA
|

3269235 | 3269323 | + | 89 | 146297766 | Fjoh_R0063 | - | 15 Leu tRNA
|

3353648 | 3353725 | + | 78 | 146297766 | Fjoh_R0064 | - | 13 Val tRNA
|

3354107 | 3354184 | + | 78 | 146297766 | Fjoh_R0065 | - | 13 Val tRNA
|

3525190 | 3525266 | + | 77 | 146297766 | Fjoh_R0066 | - | 11 Arg tRNA
|

5118548 | 5118667 | - | 120 | 146297766 | Fjoh_R0067 | - | 5S ribosomal RNA |

5118824 | 5121697 | - | 2874 | 146297766 | Fjoh_R0068 | - | 23S ribosomal RNA |

5121886 | 5121962 | - | 77 | 146297766 | Fjoh_R0069 | - | 02 Ala tRNA
|

5122103 | 5122176 | - | 74 | 146297766 | Fjoh_R0070 | - | 14 Ile tRNA
|

5122301 | 5123819 | - | 1519 | 146297766 | Fjoh_R0071 | - | 16S ribosomal RNA |

5248419 | 5248499 | + | 81 | 146297766 | Fjoh_R0072 | - | 18 Tyr tRNA
|

5465948 | 5466213 | - | 266 | 146297766 | Fjoh_R0073 | - | RNA component of RNase P |

5525783 | 5525882 | - | 100 | 146297766 | Fjoh_R0074 | - | SRP RNA; RNA component of signal recognition particle |

5575980 | 5576056 | - | 77 | 146297766 | Fjoh_R0075 | - | 11 Arg tRNA
|

5576071 | 5576145 | - | 75 | 146297766 | Fjoh_R0076 | - | 03 Pro tRNA
|

5576160 | 5576243 | - | 84 | 146297766 | Fjoh_R0077 | - | 08 Ser tRNA
|

5696434 | 5696509 | - | 76 | 146297766 | Fjoh_R0078 | - | 09 His tRNA
|

5739228 | 5739348 | - | 121 | 146297766 | Fjoh_R0079 | - | Xaa tRNA |

5787394 | 5787790 | + | 397 | 146297766 | Fjoh_R0080 | - | tmRNA |

5965190 | 5965261 | - | 72 | 146297766 | Fjoh_R0081 | - | 04 Glu tRNA
|

5965304 | 5965378 | - | 75 | 146297766 | Fjoh_R0082 | - | 04 Glu tRNA
|

6091459 | 6091532 | - | 74 | 146297766 | Fjoh_R0083 | - | 20 Trp tRNA
|