Материалы:NC 008554

LOCUS NC_008554 4990251 bp DNA circular BCT 01-NOV-2006 DEFINITION Syntrophobacter fumaroxidans MPOB, complete genome. ACCESSION NC_008554 VERSION NC_008554.1 GI:116747452 KEYWORDS . SOURCE Syntrophobacter fumaroxidans MPOB ORGANISM Syntrophobacter fumaroxidans MPOB Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter. REFERENCE 1 (bases 1 to 4990251) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Syntrophobacter fumaroxidans MPOB JOURNAL Unpublished REFERENCE 2 (bases 1 to 4990251) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4990251) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E.G., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J., Sieber,J., Stams,A.J.M., Worm,P., Henstra,A.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (23-OCT-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000478. URL -- http://www.jgi.doe.gov JGI Project ID: 3634477 Source DNA and bacteria available from Michael J. McInerney (mcinerney@ou.edu) Contacts: Michael J. McInerney (mcinerney@ou.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

2632 | 2708 | - | 77 | 116747452 | Sfum_R0001 | - | 16 Met tRNA
|

97015 | 97089 | + | 75 | 116747452 | Sfum_R0002 | - | 19 Cys tRNA
|

117774 | 117850 | - | 77 | 116747452 | Sfum_R0003 | - | 06 Asp tRNA
|

117864 | 117939 | - | 76 | 116747452 | Sfum_R0004 | - | 13 Val tRNA
|

124502 | 124588 | - | 87 | 116747452 | Sfum_R0005 | - | 15 Leu tRNA
|

253670 | 253745 | + | 76 | 116747452 | Sfum_R0006 | - | 17 Phe tRNA
|

391640 | 391715 | + | 76 | 116747452 | Sfum_R0007 | - | 02 Ala tRNA
|

513785 | 513859 | + | 75 | 116747452 | Sfum_R0008 | - | 13 Val tRNA
|

643671 | 643745 | - | 75 | 116747452 | Sfum_R0009 | - | 12 Thr tRNA
|

727351 | 727444 | - | 94 | 116747452 | Sfum_R0010 | - | SRP RNA; RNA component of signal recognition particle |

818767 | 818843 | - | 77 | 116747452 | Sfum_R0011 | - | 20 Trp tRNA
|

832021 | 832096 | + | 76 | 116747452 | Sfum_R0012 | - | 13 Val tRNA
|

847128 | 848682 | + | 1555 | 116747452 | Sfum_R0013 | - | 16S ribosomal RNA |

848741 | 848819 | + | 79 | 116747452 | Sfum_R0014 | - | 14 Ile tRNA
|

848853 | 848928 | + | 76 | 116747452 | Sfum_R0015 | - | 02 Ala tRNA
|

849287 | 852097 | + | 2811 | 116747452 | Sfum_R0016 | - | 23S ribosomal RNA |

852169 | 852285 | + | 117 | 116747452 | Sfum_R0017 | - | 5S ribosomal RNA |

995891 | 996019 | - | 129 | 116747452 | Sfum_R0018 | - | |

999525 | 999600 | - | 76 | 116747452 | Sfum_R0019 | - | 09 His tRNA
|

1053856 | 1053930 | + | 75 | 116747452 | Sfum_R0020 | - | 01 Gly tRNA
|

1085869 | 1085963 | + | 95 | 116747452 | Sfum_R0021 | - | Sec tRNA |

1206296 | 1206371 | - | 76 | 116747452 | Sfum_R0022 | - | 04 Glu tRNA
|

1206381 | 1206454 | - | 74 | 116747452 | Sfum_R0023 | - | 05 Gln tRNA
|

1274887 | 1274963 | - | 77 | 116747452 | Sfum_R0024 | - | 11 Arg tRNA
|

1313294 | 1313370 | + | 77 | 116747452 | Sfum_R0025 | - | 01 Gly tRNA
|

1375527 | 1375602 | - | 76 | 116747452 | Sfum_R0026 | - | 02 Ala tRNA
|

1382201 | 1382273 | - | 73 | 116747452 | Sfum_R0027 | - | 02 Ala tRNA
|

1382637 | 1382724 | + | 88 | 116747452 | Sfum_R0028 | - | 15 Leu tRNA
|

1497358 | 1497430 | - | 73 | 116747452 | Sfum_R0029 | - | 16 Met tRNA
|

1518030 | 1518105 | + | 76 | 116747452 | Sfum_R0030 | - | 01 Gly tRNA
|

1551485 | 1551561 | - | 77 | 116747452 | Sfum_R0031 | - | 03 Pro tRNA
|

1782059 | 1782130 | + | 72 | 116747452 | Sfum_R0032 | - | 12 Thr tRNA
|

1900534 | 1900618 | + | 85 | 116747452 | Sfum_R0033 | - | 18 Tyr tRNA
|

1900784 | 1900860 | + | 77 | 116747452 | Sfum_R0034 | - | 12 Thr tRNA
|

1971357 | 1971433 | + | 77 | 116747452 | Sfum_R0035 | - | 11 Arg tRNA
|

1971453 | 1971527 | + | 75 | 116747452 | Sfum_R0036 | - | 10 Lys tRNA
|

2009580 | 2009902 | - | 323 | 116747452 | Sfum_R0037 | - | RNA component of RNaseP |

2034257 | 2034436 | - | 180 | 116747452 | Sfum_R0038 | - | |

2207674 | 2207806 | - | 133 | 116747452 | Sfum_R0039 | - | |

2361379 | 2361456 | + | 78 | 116747452 | Sfum_R0040 | - | 03 Pro tRNA
|

2516710 | 2516795 | - | 86 | 116747452 | Sfum_R0041 | - | 15 Leu tRNA
|

2956592 | 2956762 | + | 171 | 116747452 | Sfum_R0042 | - | |

2990428 | 2990515 | + | 88 | 116747452 | Sfum_R0043 | - | 15 Leu tRNA
|

3000428 | 3000511 | + | 84 | 116747452 | Sfum_R0044 | - | Xaa tRNA |

3121848 | 3121940 | + | 93 | 116747452 | Sfum_R0045 | - | 08 Ser tRNA
|

3121958 | 3122051 | + | 94 | 116747452 | Sfum_R0046 | - | 08 Ser tRNA
|

3183599 | 3183715 | - | 117 | 116747452 | Sfum_R0047 | - | 5S ribosomal RNA |

3183787 | 3186597 | - | 2811 | 116747452 | Sfum_R0048 | - | 23S ribosomal RNA |

3186956 | 3187031 | - | 76 | 116747452 | Sfum_R0049 | - | 02 Ala tRNA
|

3187065 | 3187143 | - | 79 | 116747452 | Sfum_R0050 | - | 14 Ile tRNA
|

3187202 | 3188756 | - | 1555 | 116747452 | Sfum_R0051 | - | 16S ribosomal RNA |

3438094 | 3438189 | + | 96 | 116747452 | Sfum_R0052 | - | 08 Ser tRNA
|

3438305 | 3438397 | + | 93 | 116747452 | Sfum_R0053 | - | 08 Ser tRNA
|

3445275 | 3445350 | + | 76 | 116747452 | Sfum_R0054 | - | 07 Asn tRNA
|

3516657 | 3516732 | + | 76 | 116747452 | Sfum_R0055 | - | 11 Arg tRNA
|

3638674 | 3638748 | - | 75 | 116747452 | Sfum_R0056 | - | 03 Pro tRNA
|

3903641 | 3903727 | - | 87 | 116747452 | Sfum_R0057 | - | 15 Leu tRNA
|

4205868 | 4205945 | - | 78 | 116747452 | Sfum_R0058 | - | 04 Glu tRNA
|

4205999 | 4206074 | - | 76 | 116747452 | Sfum_R0059 | - | 10 Lys tRNA
|

4437177 | 4437253 | - | 77 | 116747452 | Sfum_R0060 | - | 11 Arg tRNA
|

4459662 | 4459736 | + | 75 | 116747452 | Sfum_R0061 | - | 05 Gln tRNA
|

4570821 | 4570897 | - | 77 | 116747452 | Sfum_R0062 | - | 11 Arg tRNA
|

4622994 | 4623344 | + | 351 | 116747452 | Sfum_R0063 | - | tmRNA |

4857774 | 4857850 | - | 77 | 116747452 | Sfum_R0064 | - | 16 Met tRNA
|