Материалы:NC 007948

LOCUS NC_007948 5200264 bp DNA circular BCT 13-APR-2006 DEFINITION Polaromonas sp. JS666, complete genome. ACCESSION NC_007948 VERSION NC_007948.1 GI:91785913 KEYWORDS . SOURCE Polaromonas sp. JS666 ORGANISM Polaromonas sp. JS666 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas. REFERENCE 1 (bases 1 to 5200264) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Polaromonas sp. JS666 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5200264) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-APR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5200264) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (03-APR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000316. URL -- http://www.jgi.doe.gov JGI Project ID: 3634502 Source DNA and bacteria available from James Gossett (jmg18@cornell.edu) Contacts: James Gossett (jmg18@cornell.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

39480 | 39591 | + | 112 | 91785913 | Bpro_R0051 | - | |

303538 | 303613 | - | 76 | 91785913 | Bpro_R0001 | - | 02 Ala tRNA
|

389805 | 389880 | + | 76 | 91785913 | Bpro_R0002 | - | 11 Arg tRNA
|

512117 | 512193 | + | 77 | 91785913 | Bpro_R0003 | - | 16 Met tRNA
|

847808 | 847883 | + | 76 | 91785913 | Bpro_R0004 | - | 12 Thr tRNA
|

863111 | 863187 | + | 77 | 91785913 | Bpro_R0005 | - | 03 Pro tRNA
|

977497 | 977584 | + | 88 | 91785913 | Bpro_R0006 | - | 08 Ser tRNA
|

1076916 | 1077193 | + | 278 | 91785913 | Bpro_R0007 | - | RNA component of RNaseP |

1159489 | 1159565 | - | 77 | 91785913 | Bpro_R0008 | - | 16 Met tRNA
|

1261385 | 1261459 | - | 75 | 91785913 | Bpro_R0009 | - | 11 Arg tRNA
|

1336133 | 1336209 | - | 77 | 91785913 | Bpro_R0010 | - | 05 Gln tRNA
|

1348329 | 1348405 | + | 77 | 91785913 | Bpro_R0011 | - | 16 Met tRNA
|

1372288 | 1372364 | + | 77 | 91785913 | Bpro_R0012 | - | 11 Arg tRNA
|

1385022 | 1385111 | - | 90 | 91785913 | Bpro_R0013 | - | 08 Ser tRNA
|

1522987 | 1523056 | + | 70 | 91785913 | Bpro_R0014 | - | 14 Ile tRNA
|

1635757 | 1635832 | - | 76 | 91785913 | Bpro_R0015 | - | 12 Thr tRNA
|

1662458 | 1662533 | + | 76 | 91785913 | Bpro_R0016 | - | 02 Ala tRNA
|

1662620 | 1662695 | + | 76 | 91785913 | Bpro_R0017 | - | 04 Glu tRNA
|

1662795 | 1662871 | + | 77 | 91785913 | Bpro_R0018 | - | 06 Asp tRNA
|

1861517 | 1861900 | + | 384 | 91785913 | Bpro_R0019 | - | tmRNA |

1930584 | 1930680 | - | 97 | 91785913 | Bpro_R0055 | - | |

1930708 | 1930819 | - | 112 | 91785913 | Bpro_R0056 | - | |

2021019 | 2021092 | - | 74 | 91785913 | Bpro_R0020 | - | 01 Gly tRNA
|

2056369 | 2056444 | + | 76 | 91785913 | Bpro_R0021 | - | 10 Lys tRNA
|

2102385 | 2102471 | + | 87 | 91785913 | Bpro_R0022 | - | 15 Leu tRNA
|

2108684 | 2108759 | + | 76 | 91785913 | Bpro_R0023 | - | 01 Gly tRNA
|

2108864 | 2108937 | + | 74 | 91785913 | Bpro_R0024 | - | 19 Cys tRNA
|

2109011 | 2109103 | + | 93 | 91785913 | Bpro_R0025 | - | 15 Leu tRNA
|

2199178 | 2199254 | + | 77 | 91785913 | Bpro_R0026 | - | 03 Pro tRNA
|

2280069 | 2280143 | + | 75 | 91785913 | Bpro_R0027 | - | 13 Val tRNA
|

2360018 | 2360119 | - | 102 | 91785913 | Bpro_R0028 | - | SRP RNA; RNA component of signal recognition particle |

2422284 | 2422359 | + | 76 | 91785913 | Bpro_R0029 | - | 07 Asn tRNA
|

2510476 | 2510565 | - | 90 | 91785913 | Bpro_R0030 | - | 08 Ser tRNA
|

2844707 | 2844791 | + | 85 | 91785913 | Bpro_R0031 | - | 15 Leu tRNA
|

2847278 | 2847354 | - | 77 | 91785913 | Bpro_R0032 | - | 13 Val tRNA
|

2929075 | 2929365 | - | 291 | 91785913 | Bpro_R0052 | - | |

3015144 | 3015236 | - | 93 | 91785913 | Bpro_R0033 | - | 08 Ser tRNA
|

3136016 | 3136092 | - | 77 | 91785913 | Bpro_R0034 | - | 11 Arg tRNA
|

3136151 | 3136227 | - | 77 | 91785913 | Bpro_R0035 | - | 03 Pro tRNA
|

3229072 | 3229147 | - | 76 | 91785913 | Bpro_R0036 | - | 09 His tRNA
|

3231206 | 3231281 | - | 76 | 91785913 | Bpro_R0037 | - | 13 Val tRNA
|

3447218 | 3447302 | - | 85 | 91785913 | Bpro_R0038 | - | 15 Leu tRNA
|

3934264 | 3934348 | + | 85 | 91785913 | Bpro_R0039 | - | 15 Leu tRNA
|

4407321 | 4407421 | + | 101 | 91785913 | Bpro_R0054 | - | |

4407423 | 4407538 | + | 116 | 91785913 | Bpro_R0053 | - | |

4448265 | 4448377 | - | 113 | 91785913 | Bpro_R0040 | - | 5S ribosomal RNA |

4448521 | 4451403 | - | 2883 | 91785913 | Bpro_R0041 | - | 23S ribosomal RNA |

4451713 | 4451788 | - | 76 | 91785913 | Bpro_R0042 | - | 02 Ala tRNA
|

4451816 | 4451892 | - | 77 | 91785913 | Bpro_R0043 | - | 14 Ile tRNA
|

4452033 | 4453560 | - | 1528 | 91785913 | Bpro_R0044 | - | 16S ribosomal RNA |

4561988 | 4562063 | - | 76 | 91785913 | Bpro_R0045 | - | 01 Gly tRNA
|

4680697 | 4680772 | - | 76 | 91785913 | Bpro_R0046 | - | 17 Phe tRNA
|

4702455 | 4702530 | - | 76 | 91785913 | Bpro_R0047 | - | 20 Trp tRNA
|

4703820 | 4703894 | - | 75 | 91785913 | Bpro_R0048 | - | 12 Thr tRNA
|

4703962 | 4704035 | - | 74 | 91785913 | Bpro_R0049 | - | 01 Gly tRNA
|

4704149 | 4704234 | - | 86 | 91785913 | Bpro_R0050 | - | 18 Tyr tRNA
|

5188267 | 5188343 | - | 77 | 91785913 | Bpro_R0060 | - |