Материалы:NC 007794

LOCUS NC_007794 3561584 bp DNA circular BCT 30-MAR-2006 DEFINITION Novosphingobium aromaticivorans DSM 12444, complete genome. ACCESSION NC_007794 VERSION NC_007794.1 GI:87198026 KEYWORDS . SOURCE Novosphingobium aromaticivorans DSM 12444 ORGANISM Novosphingobium aromaticivorans DSM 12444 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium. REFERENCE 1 (bases 1 to 3561584) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., Fredrickson,J., Balkwill,D., Romine,M.F. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Novosphingobium aromaticivorans DSM 12444 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3561584) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-FEB-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3561584) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., Fredrickson,J., Balkwill,D., Romine,M.F. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (19-JAN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000248. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Margie Romine(margie.romine@pnl.gov) Contact: Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

163991 | 164075 | + | 85 | 87198026 | Saro_R0001 | - | 15 Leu tRNA
|

249576 | 249864 | + | 289 | 87198026 | Saro_R0002 | - | |

251494 | 251570 | + | 77 | 87198026 | Saro_R0003 | - | 11 Arg tRNA
|

268084 | 268150 | - | 67 | 87198026 | Saro_R0004 | - | Xaa tRNA |

284600 | 284674 | - | 75 | 87198026 | Saro_R0005 | - | 01 Gly tRNA
|

516668 | 516741 | + | 74 | 87198026 | Saro_R0006 | - | 05 Gln tRNA
|

546809 | 546882 | + | 74 | 87198026 | Saro_R0007 | - | 19 Cys tRNA
|

665380 | 665453 | - | 74 | 87198026 | Saro_R0008 | - | 01 Gly tRNA
|

742029 | 742115 | + | 87 | 87198026 | Saro_R0009 | - | 15 Leu tRNA
|

839802 | 839894 | - | 93 | 87198026 | Saro_R0010 | - | 08 Ser tRNA
|

879910 | 879985 | + | 76 | 87198026 | Saro_R0011 | - | 20 Trp tRNA
|

904385 | 904459 | - | 75 | 87198026 | Saro_R0012 | - | 13 Val tRNA
|

935070 | 935399 | + | 330 | 87198026 | Saro_R0013 | - | tmRNA |

1097478 | 1097553 | - | 76 | 87198026 | Saro_R0014 | - | 17 Phe tRNA
|

1193066 | 1193141 | + | 76 | 87198026 | Saro_R0015 | - | 02 Ala tRNA
|

1251847 | 1251923 | - | 77 | 87198026 | Saro_R0016 | - | 03 Pro tRNA
|

1329830 | 1329904 | - | 75 | 87198026 | Saro_R0017 | - | 13 Val tRNA
|

1371021 | 1371096 | + | 76 | 87198026 | Saro_R0018 | - | 02 Ala tRNA
|

1385864 | 1385939 | + | 76 | 87198026 | Saro_R0019 | - | 12 Thr tRNA
|

1394303 | 1394378 | - | 76 | 87198026 | Saro_R0020 | - | 16 Met tRNA
|

1403602 | 1403693 | + | 92 | 87198026 | Saro_R0021 | - | SRP RNA; RNA component of signal recognition particle |

1413246 | 1413331 | + | 86 | 87198026 | Saro_R0022 | - | 18 Tyr tRNA
|

1431862 | 1431938 | + | 77 | 87198026 | Saro_R0023 | - | 09 His tRNA
|

1493941 | 1494031 | + | 91 | 87198026 | Saro_R0024 | - | 08 Ser tRNA
|

1702491 | 1702567 | - | 77 | 87198026 | Saro_R0025 | - | 16 Met tRNA
|

1926155 | 1926262 | + | 108 | 87198026 | Saro_R0026 | - | |

1949626 | 1949721 | + | 96 | 87198026 | Saro_R0027 | - | |

1949722 | 1949846 | + | 125 | 87198026 | Saro_R0028 | - | |

2019859 | 2019935 | + | 77 | 87198026 | Saro_R0029 | - | 11 Arg tRNA
|

2019998 | 2020074 | + | 77 | 87198026 | Saro_R0030 | - | 11 Arg tRNA
|

2060462 | 2060551 | + | 90 | 87198026 | Saro_R0031 | - | 08 Ser tRNA
|

2075543 | 2075626 | - | 84 | 87198026 | Saro_R0032 | - | 15 Leu tRNA
|

2089583 | 2089659 | - | 77 | 87198026 | Saro_R0033 | - | 06 Asp tRNA
|

2089968 | 2090044 | - | 77 | 87198026 | Saro_R0034 | - | 06 Asp tRNA
|

2095661 | 2095737 | + | 77 | 87198026 | Saro_R0035 | - | 03 Pro tRNA
|

2105462 | 2105536 | + | 75 | 87198026 | Saro_R0036 | - | 07 Asn tRNA
|

2144419 | 2144495 | - | 77 | 87198026 | Saro_R0037 | - | 11 Arg tRNA
|

2214965 | 2215041 | + | 77 | 87198026 | Saro_R0038 | - | 03 Pro tRNA
|

2272437 | 2272512 | + | 76 | 87198026 | Saro_R0039 | - | 10 Lys tRNA
|

2272556 | 2272631 | + | 76 | 87198026 | Saro_R0040 | - | 10 Lys tRNA
|

2334344 | 2334429 | - | 86 | 87198026 | Saro_R0041 | - | |

2415278 | 2415352 | + | 75 | 87198026 | Saro_R0042 | - | 04 Glu tRNA
|

2415412 | 2415486 | + | 75 | 87198026 | Saro_R0043 | - | 04 Glu tRNA
|

2679696 | 2679785 | - | 90 | 87198026 | Saro_R0044 | - | 08 Ser tRNA
|

2697099 | 2697175 | + | 77 | 87198026 | Saro_R0045 | - | 11 Arg tRNA
|

2752877 | 2752952 | + | 76 | 87198026 | Saro_R0046 | - | 12 Thr tRNA
|

2804473 | 2804547 | + | 75 | 87198026 | Saro_R0047 | - | 05 Gln tRNA
|

2847088 | 2847164 | - | 77 | 87198026 | Saro_R0048 | - | 16 Met tRNA
|

2847288 | 2847402 | - | 115 | 87198026 | Saro_R0049 | - | 5S ribosomal RNA |

2847556 | 2850338 | - | 2783 | 87198026 | Saro_R0050 | - | 23S ribosomal RNA |

2850668 | 2850743 | - | 76 | 87198026 | Saro_R0051 | - | 02 Ala tRNA
|

2850762 | 2850838 | - | 77 | 87198026 | Saro_R0052 | - | 14 Ile tRNA
|

2851010 | 2852488 | - | 1479 | 87198026 | Saro_R0053 | - | 16S ribosomal RNA |

2852821 | 2852897 | - | 77 | 87198026 | Saro_R0054 | - | 16 Met tRNA
|

2853021 | 2853135 | - | 115 | 87198026 | Saro_R0055 | - | 5S ribosomal RNA |

2853289 | 2856071 | - | 2783 | 87198026 | Saro_R0056 | - | 23S ribosomal RNA |

2856401 | 2856476 | - | 76 | 87198026 | Saro_R0057 | - | 02 Ala tRNA
|

2856495 | 2856571 | - | 77 | 87198026 | Saro_R0058 | - | 14 Ile tRNA
|

2856743 | 2858221 | - | 1479 | 87198026 | Saro_R0059 | - | 16S ribosomal RNA |

2858554 | 2858630 | - | 77 | 87198026 | Saro_R0060 | - | 16 Met tRNA
|

2858754 | 2858868 | - | 115 | 87198026 | Saro_R0061 | - | 5S ribosomal RNA |

2859022 | 2861804 | - | 2783 | 87198026 | Saro_R0062 | - | 23S ribosomal RNA |

2862134 | 2862209 | - | 76 | 87198026 | Saro_R0063 | - | 02 Ala tRNA
|

2862228 | 2862304 | - | 77 | 87198026 | Saro_R0064 | - | 14 Ile tRNA
|

2862476 | 2863954 | - | 1479 | 87198026 | Saro_R0065 | - | 16S ribosomal RNA |

2932877 | 2932952 | + | 76 | 87198026 | Saro_R0066 | - | 13 Val tRNA
|

2980738 | 2980807 | + | 70 | 87198026 | Saro_R0067 | - | 13 Val tRNA
|

3200632 | 3200717 | + | 86 | 87198026 | Saro_R0068 | - | Xaa tRNA |

3237082 | 3237155 | - | 74 | 87198026 | Saro_R0069 | - | 01 Gly tRNA
|

3267285 | 3267641 | + | 357 | 87198026 | Saro_R0070 | - | RNA component of RNaseP |

3277055 | 3277139 | - | 85 | 87198026 | Saro_R0071 | - | 15 Leu tRNA
|

3300661 | 3300747 | + | 87 | 87198026 | Saro_R0072 | - | 15 Leu tRNA
|

3312660 | 3312735 | - | 76 | 87198026 | Saro_R0073 | - | 10 Lys tRNA
|

3486528 | 3486602 | + | 75 | 87198026 | Saro_R0074 | - | 12 Thr tRNA
|