Материалы:NC 004741

```
LOCUS NC_004741 4599354 bp DNA circular BCT 14-SEP-2007
DEFINITION Shigella flexneri 2a str. 2457T, complete genome.
ACCESSION NC_004741
VERSION NC_004741.1 GI:30061571
KEYWORDS .
SOURCE Shigella flexneri 2a str. 2457T
ORGANISM Shigella flexneri 2a str. 2457T
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Shigella.
REFERENCE 1 (bases 1 to 4599354)
AUTHORS Wei,J., Goldberg,M.B., Burland,V., Venkatesan,M.M., Deng,W.,
Fournier,G., Mayhew,G.F., Plunkett,G.III, Rose,D.J., Darling,A.,
Mau,B., Perna,N.T., Payne,S.M., Runyen-Janecky,L.J., Zhou,S.,
Schwartz,D.C. and Blattner,F.R.
TITLE Complete Genome Sequence and Comparative Genomics of Shigella
flexneri Serotype 2a Strain 2457T
JOURNAL Infect. Immun. 71 (5), 2775-2786 (2003)
PUBMED 12704152
REFERENCE 2 (bases 1 to 4599354)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-APR-2003) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4599354)
AUTHORS Wei,J., Goldberg,M.B., Burland,V., Venkatesan,M.M., Deng,W.,
Fournier,G., Mayhew,G.F., Plunkett,G.III, Rose,D.J., Darling,A.,
Mau,B., Perna,N.T., Payne,S.M., Runyen-Janecky,L.J., Zhou,S.,
Schwartz,D.C. and Blattner,F.R.
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2002) Genetics Laboratory, University of
Wisconsin - Madison, 445 Henry Mall, Madison, WI 53706, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE014073.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

15602 | 15656 | + | 55 | 30061571 | S0016 | - | antisense RNA |

214156 | 215696 | + | 1541 | 30061571 | S0194 | - | 16S ribosomal RNA |

215765 | 215841 | + | 77 | 30061571 | S0195 | - | 14 Ile tRNA
|

215884 | 215959 | + | 76 | 30061571 | S0196 | - | 02 Ala tRNA
|

216143 | 219046 | + | 2904 | 30061571 | S0197 | - | 23S ribosomal RNA |

219141 | 219259 | + | 119 | 30061571 | S0198 | - | 5S ribosomal RNA |

219312 | 219388 | + | 77 | 30061571 | S0199 | - | 06 Asp tRNA
|

228962 | 229038 | + | 77 | 30061571 | S0210 | - | 06 Asp tRNA
|

313753 | 313828 | + | 76 | 30061571 | S0315 | - | 12 Thr tRNA
|

412780 | 412893 | + | 114 | 30061571 | S0407 | - | 4.5S RNA |

479736 | 479812 | + | 77 | 30061571 | S0474 | - | 11 Arg tRNA
|

572230 | 572305 | - | 76 | 30061571 | S0563 | - | 10 Lys tRNA
|

572309 | 572384 | - | 76 | 30061571 | S0564 | - | 13 Val tRNA
|

572436 | 572511 | - | 76 | 30061571 | S0565 | - | 10 Lys tRNA
|

572514 | 572589 | - | 76 | 30061571 | S0566 | - | 13 Val tRNA
|

572725 | 572800 | - | 76 | 30061571 | S0567 | - | 10 Lys tRNA
|

650819 | 650895 | + | 77 | 30061571 | S0631 | - | 16 Met tRNA
|

650904 | 650988 | + | 85 | 30061571 | S0632 | - | 15 Leu tRNA
|

651012 | 651086 | + | 75 | 30061571 | S0634 | - | 05 Gln tRNA
|

651121 | 651195 | + | 75 | 30061571 | S0636 | - | 05 Gln tRNA
|

651211 | 651287 | + | 77 | 30061571 | S0637 | - | 16 Met tRNA
|

651336 | 651410 | + | 75 | 30061571 | S0639 | - | 05 Gln tRNA
|

651448 | 651522 | + | 75 | 30061571 | S0640 | - | 05 Gln tRNA
|

709308 | 709384 | + | 77 | 30061571 | S0710 | - | 14 Ile tRNA
|

709386 | 709462 | + | 77 | 30061571 | S0711 | - | 11 Arg tRNA
|

709465 | 709539 | + | 75 | 30061571 | S0712 | - | 12 Thr tRNA
|

709543 | 709617 | + | 75 | 30061571 | S0713 | - | 01 Gly tRNA
|

718318 | 718394 | + | 77 | 30061571 | S0727 | - | 14 Ile tRNA
|

718396 | 718472 | + | 77 | 30061571 | S0728 | - | 11 Arg tRNA
|

718475 | 718550 | + | 76 | 30061571 | S0729 | - | 12 Thr tRNA
|

718554 | 718628 | + | 75 | 30061571 | S0730 | - | 01 Gly tRNA
|

872069 | 872156 | - | 88 | 30061571 | S0883 | - | 08 Ser tRNA
|

1023509 | 1023596 | - | 88 | 30061571 | S1039 | - | 08 Ser tRNA
|

1076674 | 1076761 | - | 88 | 30061571 | S1099 | - | 08 Ser tRNA
|

1282470 | 1282554 | - | 85 | 30061571 | S1317 | - | 18 Tyr tRNA
|

1445087 | 1446581 | + | 1495 | 30061571 | S1481 | - | |

1616401 | 1616477 | - | 77 | 30061571 | S1662 | - | 11 Arg tRNA
|

1616579 | 1616654 | - | 76 | 30061571 | S1663 | - | 14 Ile tRNA
|

1765714 | 1765790 | + | 77 | 30061571 | S1825 | - | 13 Val tRNA
|

1765795 | 1765871 | + | 77 | 30061571 | S1826 | - | 13 Val tRNA
|

1914353 | 1914427 | - | 75 | 30061571 | S1982 | - | 01 Gly tRNA
|

1914431 | 1914506 | - | 76 | 30061571 | S1983 | - | 12 Thr tRNA
|

1914509 | 1914585 | - | 77 | 30061571 | S1984 | - | 11 Arg tRNA
|

1914587 | 1914662 | - | 76 | 30061571 | S1985 | - | 14 Ile tRNA
|

1964753 | 1964839 | - | 87 | 30061571 | S2048 | - | 15 Leu tRNA
|

1964852 | 1964925 | - | 74 | 30061571 | S2049 | - | 19 Cys tRNA
|

1964980 | 1965055 | - | 76 | 30061571 | S2050 | - | 01 Gly tRNA
|

2001774 | 2001860 | - | 87 | 30061571 | S2093 | - | antsense RNA silencer of rcsA gene |

2036312 | 2036387 | - | 76 | 30061571 | S2137 | - | 12 Thr tRNA
|

2036468 | 2036543 | - | 76 | 30061571 | S2138 | - | 14 Ile tRNA
|

2041762 | 2041851 | - | 90 | 30061571 | S2147 | - | 08 Ser tRNA
|

2042843 | 2042918 | + | 76 | 30061571 | S2149 | - | 07 Asn tRNA
|

2050720 | 2050795 | - | 76 | 30061571 | S2162 | - | 07 Asn tRNA
|

2052528 | 2052603 | + | 76 | 30061571 | S2164 | - | 07 Asn tRNA
|

2054938 | 2055013 | + | 76 | 30061571 | S2167 | - | 07 Asn tRNA
|

2288868 | 2288944 | + | 77 | 30061571 | S2405 | - | 03 Pro tRNA
|

2313945 | 2314036 | + | 92 | 30061571 | S2430 | - | regulatory antisense RNA |

2454726 | 2454800 | + | 75 | 30061571 | S2561 | - | 11 Arg tRNA
|

2497591 | 2497666 | - | 76 | 30061571 | S2601 | - | 02 Ala tRNA
|

2497706 | 2497781 | - | 76 | 30061571 | S2602 | - | 02 Ala tRNA
|

2500481 | 2500556 | + | 76 | 30061571 | S2606 | - | 13 Val tRNA
|

2500601 | 2500676 | + | 76 | 30061571 | S2607 | - | 13 Val tRNA
|

2500681 | 2500756 | + | 76 | 30061571 | S2608 | - | 10 Lys tRNA
|

2716555 | 2716673 | - | 119 | 30061571 | S2823 | - | 5S ribosomal RNA |

2716768 | 2719671 | - | 2904 | 30061571 | S2824 | - | 23S ribosomal RNA |

2719865 | 2719940 | - | 76 | 30061571 | S2825 | - | 04 Glu tRNA
|

2720026 | 2721566 | - | 1541 | 30061571 | S2826 | - | 16S ribosomal RNA |

2748766 | 2749128 | + | 363 | 30061571 | S2858 | - | 10Sa RNA (tmRNA) |

2753003 | 2753078 | - | 76 | 30061571 | S2864 | - | 14 Ile tRNA
|

2786184 | 2786260 | - | 77 | 30061571 | S2905 | - | 11 Arg tRNA
|

2786325 | 2786401 | - | 77 | 30061571 | S2906 | - | 11 Arg tRNA
|

2786466 | 2786542 | - | 77 | 30061571 | S2907 | - | 11 Arg tRNA
|

2786607 | 2786683 | - | 77 | 30061571 | S2908 | - | 11 Arg tRNA
|

2786687 | 2786779 | - | 93 | 30061571 | S2909 | - | 08 Ser tRNA
|

2877845 | 2878213 | - | 369 | 30061571 | S3000 | - | CsrA-binding RNA |

2902512 | 2902588 | + | 77 | 30061571 | S3023 | - | 16 Met tRNA
|

2902622 | 2902698 | + | 77 | 30061571 | S3024 | - | 16 Met tRNA
|

2951077 | 2951150 | - | 74 | 30061571 | S3066 | - | 01 Gly tRNA
|

2981986 | 2982169 | + | 184 | 30061571 | S3096 | - | 6S RNA |

3044640 | 3044715 | + | 76 | 30061571 | S3167 | - | 17 Phe tRNA
|

3194737 | 3194812 | + | 76 | 30061571 | S3316 | - | 14 Ile tRNA
|

3252828 | 3253204 | - | 377 | 30061571 | S3375 | - | RNA component of RNase P |

3301512 | 3301588 | - | 77 | 30061571 | S3429 | - | 16 Met tRNA
|

3305372 | 3305458 | - | 87 | 30061571 | S3432 | - | 15 Leu tRNA
|

3396385 | 3396497 | - | 113 | 30061571 | S3528 | - | 5S ribosomal RNA |

3396538 | 3396613 | - | 76 | 30061571 | S3529 | - | 12 Thr tRNA
|

3396626 | 3396744 | - | 119 | 30061571 | S3530 | - | 5S ribosomal RNA |

3396839 | 3399742 | - | 2904 | 30061571 | S3531 | - | 23S ribosomal RNA |

3399926 | 3400001 | - | 76 | 30061571 | S3532 | - | 02 Ala tRNA
|

3400044 | 3400120 | - | 77 | 30061571 | S3533 | - | 14 Ile tRNA
|

3400189 | 3401730 | - | 1542 | 30061571 | S3534 | - | 16S ribosomal RNA |

3541100 | 3541218 | - | 119 | 30061571 | S3653 | - | 5S ribosomal RNA |

3541313 | 3544216 | - | 2904 | 30061571 | S3654 | - | 23S ribosomal RNA |

3544410 | 3544485 | - | 76 | 30061571 | S3655 | - | 04 Glu tRNA
|

3544571 | 3546112 | - | 1542 | 30061571 | S3656 | - | 16S ribosomal RNA |

3577637 | 3577712 | - | 76 | 30061571 | S3683 | - | 12 Thr tRNA
|

3577719 | 3577793 | - | 75 | 30061571 | S3684 | - | 01 Gly tRNA
|

3577910 | 3577994 | - | 85 | 30061571 | S3685 | - | 18 Tyr tRNA
|

3578003 | 3578078 | - | 76 | 30061571 | S3686 | - | 12 Thr tRNA
|

3581536 | 3581654 | - | 119 | 30061571 | S3691 | - | 5S ribosomal RNA |

3581749 | 3584652 | - | 2904 | 30061571 | S3692 | - | 23S ribosomal RNA |

3584846 | 3584921 | - | 76 | 30061571 | S3693 | - | 04 Glu tRNA
|

3585007 | 3586548 | - | 1542 | 30061571 | S3694 | - | 16S ribosomal RNA |

3594803 | 3594911 | + | 109 | 30061571 | S3702 | - | regulatory RNA |

3710524 | 3710632 | - | 109 | 30061571 | S3812 | - | spot 42 RNA |

3719726 | 3719844 | - | 119 | 30061571 | S3821 | - | 5S ribosomal RNA |

3719939 | 3722842 | - | 2904 | 30061571 | S3822 | - | 23S ribosomal RNA |

3723026 | 3723101 | - | 76 | 30061571 | S3823 | - | 02 Ala tRNA
|

3723144 | 3723220 | - | 77 | 30061571 | S3824 | - | 14 Ile tRNA
|

3723289 | 3724830 | - | 1542 | 30061571 | S3825 | - | 16S ribosomal RNA |

3781918 | 3781994 | - | 77 | 30061571 | S3886 | - | 03 Pro tRNA
|

3782037 | 3782123 | - | 87 | 30061571 | S3887 | - | 15 Leu tRNA
|

3782144 | 3782219 | - | 76 | 30061571 | S3888 | - | 09 His tRNA
|

3782278 | 3782354 | - | 77 | 30061571 | S3889 | - | 11 Arg tRNA
|

3816778 | 3816853 | - | 76 | 30061571 | S3923 | - | 20 Trp tRNA
|

3816862 | 3816938 | - | 77 | 30061571 | S3924 | - | 06 Asp tRNA
|

3816991 | 3817109 | - | 119 | 30061571 | S3925 | - | 5S ribosomal RNA |

3817204 | 3820107 | - | 2904 | 30061571 | S3926 | - | 23S ribosomal RNA |

3820301 | 3820376 | - | 76 | 30061571 | S3927 | - | 04 Glu tRNA
|

3820462 | 3822003 | - | 1542 | 30061571 | S3928 | - | 16S ribosomal RNA |

3968763 | 3968853 | - | 91 | 30061571 | S4071 | - | Sec tRNA |

4095462 | 4095538 | + | 77 | 30061571 | S4190 | - | 03 Pro tRNA
|

4388344 | 4388428 | - | 85 | 30061571 | S4485 | - | 15 Leu tRNA
|

4458364 | 4458439 | - | 76 | 30061571 | S4555 | - | 17 Phe tRNA
|

4489107 | 4489182 | + | 76 | 30061571 | S4585 | - | 01 Gly tRNA
|

4489340 | 4489415 | + | 76 | 30061571 | S4586 | - | 01 Gly tRNA
|

4489451 | 4489526 | + | 76 | 30061571 | S4587 | - | 01 Gly tRNA
|

4489562 | 4489637 | + | 76 | 30061571 | S4588 | - | 01 Gly tRNA
|

4565093 | 4565179 | - | 87 | 30061571 | S4671 | - | 15 Leu tRNA
|

4565214 | 4565300 | - | 87 | 30061571 | S4672 | - | 15 Leu tRNA
|

4565329 | 4565415 | - | 87 | 30061571 | S4673 | - | 15 Leu tRNA
|