Материалы:NC 008576

LOCUS NC_008576 4719581 bp DNA circular BCT 22-NOV-2006 DEFINITION Magnetococcus sp. MC-1, complete genome. ACCESSION NC_008576 VERSION NC_008576.1 GI:117923318 KEYWORDS . SOURCE Magnetococcus sp. MC-1 ORGANISM Magnetococcus sp. MC-1 Bacteria; Proteobacteria; Magnetococcus. REFERENCE 1 (bases 1 to 4719581) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Goodwin,L.A., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Magnetococcus sp. MC-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4719581) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-NOV-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4719581) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Goodwin,L.A., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (20-SEP-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000471. URL -- http://www.jgi.doe.gov JGI Project ID: 2351493 Source DNA and bacteria available from Dennis Bazylinski (dbazylin@iastate.edu) Contacts: Dennis Bazylinski (dbazylin@iastate.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

92618 | 92691 | - | 74 | 117923318 | Mmc1_R0001 | - | 01 Gly tRNA
|

262431 | 262507 | - | 77 | 117923318 | Mmc1_R0002 | - | 11 Arg tRNA
|

275258 | 276753 | + | 1496 | 117923318 | Mmc1_R0003 | - | 16S ribosomal RNA |

276952 | 279725 | + | 2774 | 117923318 | Mmc1_R0004 | - | 23S ribosomal RNA |

279929 | 280043 | + | 115 | 117923318 | Mmc1_R0005 | - | 5S ribosomal RNA |

874188 | 874274 | + | 87 | 117923318 | Mmc1_R0006 | - | 15 Leu tRNA
|

942164 | 942471 | + | 308 | 117923318 | Mmc1_R0007 | - | RNA component of RNaseP |

1004834 | 1004909 | - | 76 | 117923318 | Mmc1_R0008 | - | 16 Met tRNA
|

1023627 | 1023701 | + | 75 | 117923318 | Mmc1_R0009 | - | 05 Gln tRNA
|

1036450 | 1036534 | + | 85 | 117923318 | Mmc1_R0010 | - | 18 Tyr tRNA
|

1036549 | 1036622 | + | 74 | 117923318 | Mmc1_R0011 | - | 01 Gly tRNA
|

1036709 | 1036783 | + | 75 | 117923318 | Mmc1_R0012 | - | 12 Thr tRNA
|

1038525 | 1038600 | + | 76 | 117923318 | Mmc1_R0013 | - | 20 Trp tRNA
|

1072599 | 1072674 | + | 76 | 117923318 | Mmc1_R0014 | - | 07 Asn tRNA
|

1314597 | 1314686 | + | 90 | 117923318 | Mmc1_R0015 | - | 08 Ser tRNA
|

1409916 | 1409991 | + | 76 | 117923318 | Mmc1_R0016 | - | 02 Ala tRNA
|

1522615 | 1522980 | + | 366 | 117923318 | Mmc1_R0017 | - | tmRNA |

1805619 | 1805695 | + | 77 | 117923318 | Mmc1_R0018 | - | 16 Met tRNA
|

2020096 | 2020171 | + | 76 | 117923318 | Mmc1_R0019 | - | 04 Glu tRNA
|

2148163 | 2148271 | - | 109 | 117923318 | Mmc1_R0020 | - | SRP RNA; RNA component of signal recognition particle |

2333735 | 2333809 | - | 75 | 117923318 | Mmc1_R0021 | - | 01 Gly tRNA
|

2333837 | 2333913 | - | 77 | 117923318 | Mmc1_R0022 | - | 19 Cys tRNA
|

2333922 | 2333996 | - | 75 | 117923318 | Mmc1_R0023 | - | 01 Gly tRNA
|

2378938 | 2379013 | - | 76 | 117923318 | Mmc1_R0024 | - | 12 Thr tRNA
|

2379343 | 2379417 | + | 75 | 117923318 | Mmc1_R0025 | - | 13 Val tRNA
|

2414541 | 2414627 | - | 87 | 117923318 | Mmc1_R0026 | - | 15 Leu tRNA
|

2416637 | 2416723 | + | 87 | 117923318 | Mmc1_R0027 | - | 15 Leu tRNA
|

2416959 | 2417034 | - | 76 | 117923318 | Mmc1_R0028 | - | 17 Phe tRNA
|

2562382 | 2562457 | - | 76 | 117923318 | Mmc1_R0029 | - | 02 Ala tRNA
|

2736415 | 2736490 | - | 76 | 117923318 | Mmc1_R0030 | - | 04 Glu tRNA
|

2825553 | 2825643 | - | 91 | 117923318 | Mmc1_R0031 | - | 08 Ser tRNA
|

2830086 | 2830175 | - | 90 | 117923318 | Mmc1_R0032 | - | 08 Ser tRNA
|

2830428 | 2830504 | + | 77 | 117923318 | Mmc1_R0033 | - | 14 Ile tRNA
|

2830527 | 2830602 | + | 76 | 117923318 | Mmc1_R0034 | - | 02 Ala tRNA
|

3369531 | 3369607 | - | 77 | 117923318 | Mmc1_R0035 | - | 16 Met tRNA
|

3369626 | 3369740 | - | 115 | 117923318 | Mmc1_R0036 | - | 5S ribosomal RNA |

3369944 | 3372717 | - | 2774 | 117923318 | Mmc1_R0037 | - | 23S ribosomal RNA |

3372916 | 3374412 | - | 1497 | 117923318 | Mmc1_R0038 | - | 16S ribosomal RNA |

3618969 | 3619045 | - | 77 | 117923318 | Mmc1_R0039 | - | 16 Met tRNA
|

3619064 | 3619178 | - | 115 | 117923318 | Mmc1_R0040 | - | 5S ribosomal RNA |

3619382 | 3622155 | - | 2774 | 117923318 | Mmc1_R0041 | - | 23S ribosomal RNA |

3622354 | 3623850 | - | 1497 | 117923318 | Mmc1_R0042 | - | 16S ribosomal RNA |

3823561 | 3823636 | - | 76 | 117923318 | Mmc1_R0043 | - | 10 Lys tRNA
|

3888762 | 3888838 | + | 77 | 117923318 | Mmc1_R0044 | - | 03 Pro tRNA
|

3933758 | 3933834 | + | 77 | 117923318 | Mmc1_R0045 | - | 11 Arg tRNA
|

4023953 | 4024037 | - | 85 | 117923318 | Mmc1_R0046 | - | 15 Leu tRNA
|

4089776 | 4089851 | - | 76 | 117923318 | Mmc1_R0047 | - | 12 Thr tRNA
|

4176937 | 4177013 | + | 77 | 117923318 | Mmc1_R0048 | - | 03 Pro tRNA
|

4249602 | 4249676 | + | 75 | 117923318 | Mmc1_R0049 | - | 13 Val tRNA
|

4389040 | 4389129 | + | 90 | 117923318 | Mmc1_R0050 | - | 08 Ser tRNA
|

4573620 | 4573696 | - | 77 | 117923318 | Mmc1_R0051 | - | 06 Asp tRNA
|

4573867 | 4573942 | - | 76 | 117923318 | Mmc1_R0052 | - | 13 Val tRNA
|

4580547 | 4580631 | - | 85 | 117923318 | Mmc1_R0053 | - | 15 Leu tRNA
|

4580717 | 4580791 | - | 75 | 117923318 | Mmc1_R0054 | - | 09 His tRNA
|

4580977 | 4581053 | - | 77 | 117923318 | Mmc1_R0055 | - | 11 Arg tRNA
|

4581097 | 4581173 | - | 77 | 117923318 | Mmc1_R0056 | - | 03 Pro tRNA
|

4595064 | 4595140 | + | 77 | 117923318 | Mmc1_R0057 | - | 11 Arg tRNA
|