Материалы:NC 009049

LOCUS NC_009049 3147721 bp DNA circular BCT 14-AUG-2007 DEFINITION Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence. ACCESSION NC_009049 VERSION NC_009049.1 GI:126460778 KEYWORDS . SOURCE Rhodobacter sphaeroides ATCC 17029 ORGANISM Rhodobacter sphaeroides ATCC 17029 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter. REFERENCE 1 (bases 1 to 3147721) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromosome1 of Rhodobacter sphaeroides ATCC 17029 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3147721) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-MAR-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3147721) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000577. URL -- http://www.jgi.doe.gov http://www.rhodobacter.org JGI Project ID: 4000715 Source DNA and bacteria available from Chris Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu) and Samuel Kaplan (Samuel.Kaplan@uth.tmc.edu) Contacts: Samuel Kaplan (samuel.kaplan@uth.tmc.edu) Ronald C. Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

75917 | 75991 | - | 75 | 126460778 | Rsph17029_R0001 | - | 13 Val tRNA
|

87772 | 89231 | + | 1460 | 126460778 | Rsph17029_R0002 | - | 16S ribosomal RNA |

89452 | 89528 | + | 77 | 126460778 | Rsph17029_R0003 | - | 14 Ile tRNA
|

89576 | 89651 | + | 76 | 126460778 | Rsph17029_R0004 | - | 02 Ala tRNA
|

89899 | 92816 | + | 2918 | 126460778 | Rsph17029_R0005 | - | 23S ribosomal RNA |

92914 | 93031 | + | 118 | 126460778 | Rsph17029_R0006 | - | 5S ribosomal RNA |

93075 | 93151 | + | 77 | 126460778 | Rsph17029_R0007 | - | 16 Met tRNA
|

172949 | 173024 | - | 76 | 126460778 | Rsph17029_R0008 | - | 12 Thr tRNA
|

295859 | 295948 | - | 90 | 126460778 | Rsph17029_R0009 | - | 08 Ser tRNA
|

314101 | 314176 | - | 76 | 126460778 | Rsph17029_R0010 | - | 11 Arg tRNA
|

348793 | 348868 | + | 76 | 126460778 | Rsph17029_R0011 | - | 20 Trp tRNA
|

367470 | 367545 | + | 76 | 126460778 | Rsph17029_R0012 | - | 20 Trp tRNA
|

557446 | 557532 | + | 87 | 126460778 | Rsph17029_R0013 | - | 15 Leu tRNA
|

590248 | 590331 | + | 84 | 126460778 | Rsph17029_R0014 | - | 15 Leu tRNA
|

681946 | 682021 | - | 76 | 126460778 | Rsph17029_R0015 | - | 16 Met tRNA
|

758917 | 758993 | - | 77 | 126460778 | Rsph17029_R0016 | - | 11 Arg tRNA
|

767347 | 767421 | - | 75 | 126460778 | Rsph17029_R0017 | - | 01 Gly tRNA
|

850653 | 850727 | + | 75 | 126460778 | Rsph17029_R0018 | - | 04 Glu tRNA
|

974403 | 974750 | + | 348 | 126460778 | Rsph17029_R0019 | - | |

1055811 | 1055887 | + | 77 | 126460778 | Rsph17029_R0020 | - | 03 Pro tRNA
|

1313806 | 1313883 | - | 78 | 126460778 | Rsph17029_R0021 | - | 03 Pro tRNA
|

1461693 | 1461766 | - | 74 | 126460778 | Rsph17029_R0022 | - | 01 Gly tRNA
|

1526103 | 1526177 | + | 75 | 126460778 | Rsph17029_R0023 | - | 05 Gln tRNA
|

1555152 | 1555226 | - | 75 | 126460778 | Rsph17029_R0024 | - | 13 Val tRNA
|

1655806 | 1655889 | - | 84 | 126460778 | Rsph17029_R0025 | - | 15 Leu tRNA
|

1725419 | 1725495 | - | 77 | 126460778 | Rsph17029_R0026 | - | 06 Asp tRNA
|

1725531 | 1725607 | - | 77 | 126460778 | Rsph17029_R0027 | - | 06 Asp tRNA
|

1827841 | 1827912 | + | 72 | 126460778 | Rsph17029_R0028 | - | 12 Thr tRNA
|

1863644 | 1863718 | + | 75 | 126460778 | Rsph17029_R0029 | - | 01 Gly tRNA
|

1869177 | 1869250 | - | 74 | 126460778 | Rsph17029_R0030 | - | 19 Cys tRNA
|

1873018 | 1873102 | - | 85 | 126460778 | Rsph17029_R0031 | - | 15 Leu tRNA
|

1936729 | 1936803 | + | 75 | 126460778 | Rsph17029_R0032 | - | 07 Asn tRNA
|

1972534 | 1972635 | + | 102 | 126460778 | Rsph17029_R0033 | - | |

1974753 | 1974842 | - | 90 | 126460778 | Rsph17029_R0034 | - | 08 Ser tRNA
|

2184212 | 2184286 | + | 75 | 126460778 | Rsph17029_R0035 | - | 04 Glu tRNA
|

2389524 | 2389600 | + | 77 | 126460778 | Rsph17029_R0036 | - | 11 Arg tRNA
|

2408791 | 2408866 | - | 76 | 126460778 | Rsph17029_R0037 | - | 17 Phe tRNA
|

2417575 | 2417649 | + | 75 | 126460778 | Rsph17029_R0038 | - | 12 Thr tRNA
|

2502811 | 2502911 | + | 101 | 126460778 | Rsph17029_R0039 | - | SRP RNA; RNA component of signal recognition particle |

2542432 | 2542508 | + | 77 | 126460778 | Rsph17029_R0040 | - | 09 His tRNA
|

2655036 | 2655112 | - | 77 | 126460778 | Rsph17029_R0041 | - | 03 Pro tRNA
|

2734589 | 2734663 | + | 75 | 126460778 | Rsph17029_R0042 | - | 10 Lys tRNA
|

2788869 | 2788944 | + | 76 | 126460778 | Rsph17029_R0043 | - | 02 Ala tRNA
|

2860832 | 2860908 | - | 77 | 126460778 | Rsph17029_R0044 | - | 11 Arg tRNA
|

2963234 | 2963318 | + | 85 | 126460778 | Rsph17029_R0045 | - | 15 Leu tRNA
|