Материалы:NC 007973

LOCUS NC_007973 3928089 bp DNA circular BCT 19-DEC-2006 DEFINITION Ralstonia metallidurans CH34 chromosome 1, complete sequence. ACCESSION NC_007973 VERSION NC_007973.1 GI:94308945 KEYWORDS . SOURCE Ralstonia metallidurans CH34 ORGANISM Ralstonia metallidurans CH34 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus. REFERENCE 1 (bases 1 to 3928089) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M., Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A., Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S., Taghavi,S., van der Lelie,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome 1 of Ralstonia metallidurans CH34 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3928089) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-APR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3928089) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M., Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A., Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S., Taghavi,S., van der Lelie,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (18-APR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000352. URL -- http://www.jgi.doe.gov JGI Project ID: 2351356 Source DNA and bacteria available from John J. Dunn (jdunn@bnl.gov) Contacts: John J. Dunn (jdunn@bnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

169782 | 169883 | + | 102 | 94308945 | Rmet_R0001 | - | |

204307 | 204381 | + | 75 | 94308945 | Rmet_R0002 | - | 19 Cys tRNA
|

305620 | 305696 | - | 77 | 94308945 | Rmet_R0003 | - | 05 Gln tRNA
|

435726 | 436006 | + | 281 | 94308945 | Rmet_R0004 | - | RNA component of RNaseP |

490489 | 490565 | - | 77 | 94308945 | Rmet_R0005 | - | 16 Met tRNA
|

768497 | 768586 | + | 90 | 94308945 | Rmet_R0006 | - | 08 Ser tRNA
|

785497 | 785856 | - | 360 | 94308945 | Rmet_R0007 | - | tmRNA |

929831 | 929920 | - | 90 | 94308945 | Rmet_R0008 | - | 08 Ser tRNA
|

940981 | 941057 | + | 77 | 94308945 | Rmet_R0009 | - | 11 Arg tRNA
|

942032 | 942108 | + | 77 | 94308945 | Rmet_R0010 | - | 16 Met tRNA
|

955687 | 955762 | - | 76 | 94308945 | Rmet_R0011 | - | 12 Thr tRNA
|

971944 | 972115 | - | 172 | 94308945 | Rmet_R0012 | - | |

1012294 | 1012378 | + | 85 | 94308945 | Rmet_R0013 | - | 15 Leu tRNA
|

1183005 | 1183098 | + | 94 | 94308945 | Rmet_R0014 | - | 08 Ser tRNA
|

1269604 | 1269680 | + | 77 | 94308945 | Rmet_R0015 | - | 13 Val tRNA
|

1278235 | 1278311 | + | 77 | 94308945 | Rmet_R0016 | - | 03 Pro tRNA
|

1297980 | 1298055 | - | 76 | 94308945 | Rmet_R0017 | - | 10 Lys tRNA
|

1300792 | 1300867 | - | 76 | 94308945 | Rmet_R0018 | - | 10 Lys tRNA
|

1336450 | 1336525 | - | 76 | 94308945 | Rmet_R0019 | - | 16 Met tRNA
|

2046395 | 2046471 | - | 77 | 94308945 | Rmet_R0020 | - | 06 Asp tRNA
|

2046515 | 2046590 | - | 76 | 94308945 | Rmet_R0021 | - | 13 Val tRNA
|

2093378 | 2093464 | - | 87 | 94308945 | Rmet_R0022 | - | 15 Leu tRNA
|

2160684 | 2160759 | - | 76 | 94308945 | Rmet_R0023 | - | 09 His tRNA
|

2184912 | 2184987 | - | 76 | 94308945 | Rmet_R0024 | - | 16 Met tRNA
|

2273445 | 2273531 | + | 87 | 94308945 | Rmet_R0025 | - | 15 Leu tRNA
|

2315225 | 2315328 | + | 104 | 94308945 | Rmet_R0026 | - | SRP RNA; RNA component of signal recognition particle |

2329479 | 2329555 | - | 77 | 94308945 | Rmet_R0027 | - | 06 Asp tRNA
|

2329622 | 2329697 | - | 76 | 94308945 | Rmet_R0028 | - | 04 Glu tRNA
|

2329807 | 2329882 | - | 76 | 94308945 | Rmet_R0029 | - | 02 Ala tRNA
|

2330033 | 2330109 | - | 77 | 94308945 | Rmet_R0030 | - | 06 Asp tRNA
|

2330176 | 2330251 | - | 76 | 94308945 | Rmet_R0031 | - | 04 Glu tRNA
|

2330259 | 2330334 | - | 76 | 94308945 | Rmet_R0032 | - | 02 Ala tRNA
|

2377926 | 2377999 | - | 74 | 94308945 | Rmet_R0033 | - | 11 Arg tRNA
|

2379877 | 2379953 | + | 77 | 94308945 | Rmet_R0034 | - | 03 Pro tRNA
|

2422155 | 2422229 | + | 75 | 94308945 | Rmet_R0035 | - | 13 Val tRNA
|

2483060 | 2483150 | + | 91 | 94308945 | Rmet_R0036 | - | 08 Ser tRNA
|

2504604 | 2504689 | + | 86 | 94308945 | Rmet_R0037 | - | 15 Leu tRNA
|

2508446 | 2508519 | - | 74 | 94308945 | Rmet_R0038 | - | 19 Cys tRNA
|

2618213 | 2618288 | - | 76 | 94308945 | Rmet_R0039 | - | 01 Gly tRNA
|

2618372 | 2618447 | - | 76 | 94308945 | Rmet_R0040 | - | 01 Gly tRNA
|

2664646 | 2664721 | + | 76 | 94308945 | Rmet_R0041 | - | 07 Asn tRNA
|

2786048 | 2786122 | - | 75 | 94308945 | Rmet_R0042 | - | 11 Arg tRNA
|

2792588 | 2792725 | + | 138 | 94308945 | Rmet_R0043 | - | |

2833665 | 2833743 | - | 79 | 94308945 | Rmet_R0044 | - | 16 Met tRNA
|

2904993 | 2905068 | - | 76 | 94308945 | Rmet_R0045 | - | 10 Lys tRNA
|

2937778 | 2937852 | + | 75 | 94308945 | Rmet_R0046 | - | 01 Gly tRNA
|

3037311 | 3037573 | - | 263 | 94308945 | Rmet_R0047 | - | |

3071451 | 3071535 | + | 85 | 94308945 | Rmet_R0048 | - | 15 Leu tRNA
|

3366865 | 3366941 | + | 77 | 94308945 | Rmet_R0049 | - | 03 Pro tRNA
|

3427573 | 3427686 | - | 114 | 94308945 | Rmet_R0050 | - | 5S ribosomal RNA |

3427866 | 3430683 | - | 2818 | 94308945 | Rmet_R0051 | - | 23S ribosomal RNA |

3430966 | 3431041 | - | 76 | 94308945 | Rmet_R0052 | - | 02 Ala tRNA
|

3431053 | 3431129 | - | 77 | 94308945 | Rmet_R0053 | - | 14 Ile tRNA
|

3431194 | 3432720 | - | 1527 | 94308945 | Rmet_R0054 | - | 16S ribosomal RNA |

3502848 | 3502923 | - | 76 | 94308945 | Rmet_R0055 | - | 12 Thr tRNA
|

3610792 | 3610867 | - | 76 | 94308945 | Rmet_R0056 | - | 20 Trp tRNA
|

3612186 | 3612260 | - | 75 | 94308945 | Rmet_R0057 | - | 12 Thr tRNA
|

3612298 | 3612371 | - | 74 | 94308945 | Rmet_R0058 | - | 01 Gly tRNA
|

3612422 | 3612507 | - | 86 | 94308945 | Rmet_R0059 | - | 18 Tyr tRNA
|

3612806 | 3612919 | - | 114 | 94308945 | Rmet_R0060 | - | 5S ribosomal RNA |

3613099 | 3615916 | - | 2818 | 94308945 | Rmet_R0061 | - | 23S ribosomal RNA |

3616199 | 3616274 | - | 76 | 94308945 | Rmet_R0062 | - | 02 Ala tRNA
|

3616286 | 3616362 | - | 77 | 94308945 | Rmet_R0063 | - | 14 Ile tRNA
|

3616427 | 3617953 | - | 1527 | 94308945 | Rmet_R0064 | - | 16S ribosomal RNA |

3697701 | 3697776 | - | 76 | 94308945 | Rmet_R0065 | - | 02 Ala tRNA
|

3751721 | 3751796 | - | 76 | 94308945 | Rmet_R0066 | - | 11 Arg tRNA
|

3761298 | 3761385 | + | 88 | 94308945 | Rmet_R0067 | - | |

3761407 | 3761526 | + | 120 | 94308945 | Rmet_R0068 | - | |

3859161 | 3859236 | - | 76 | 94308945 | Rmet_R0069 | - | 17 Phe tRNA
|