Материалы:NC 005085

```
LOCUS NC_005085 4751080 bp DNA circular BCT 22-JUN-2007
DEFINITION Chromobacterium violaceum ATCC 12472, complete genome.
ACCESSION NC_005085
VERSION NC_005085.1 GI:34495455
KEYWORDS .
SOURCE Chromobacterium violaceum ATCC 12472
ORGANISM Chromobacterium violaceum ATCC 12472
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales;
Neisseriaceae; Chromobacterium.
REFERENCE 1 (bases 1 to 4751080)
AUTHORS Vasconcelos,A.T.R., de Almeida,D.F., Almeida,F.C., de
Almeida,L.G.P., de Almeida,R., Goncalves,J.A.A., Andrade,E.M.,
Antonio,R.V., Araripe,J., de Araujo,M.F.F., Filho,S.A., Azevedo,V.,
Batista,A.J., Bataus,L.A.M., Batista,J.S., Belo,A., vander Berg,C.,
Blamey,J., Bogo,M., Bonato,S., Bordignon,J., Brito,C.A.,
Brocchi,M., Burity,H.A., Camargo,A.A., Cardoso,D.D.P.,
Carneiro,N.P., Carraro,D.M., Carvalho,C.M.B., Cascardo,J.C.M.,
Cavada,B.S., Chueire,L.M.O., Pasa,T.B.C., Duran,N., Fagundes,N.,
Falcao,C.L., Fantinatti,F., Farias,I.P., Felipe,M.S.S.,
Ferrari,L.P., Ferro,J.A., Ferro,M.I.T., Franco,G.R.,
Freitas,N.S.A., Furlan,L.R., Gazzinelli,R.T., Gomes,E.A.,
Goncalves,P.R., Grangeiro,T.B., Grattapaglia,D., Grisard,E.C.,
Guimaraes,C.T., Hanna,E.S., Hungria,M., Jardim,S.N., Laurino,J.,
Leoi,L.C.T., Fassarella,L., Lima,A., Loureiro,M.F., Lyra,M.C.P.,
Macedo,M., Madeira,H.M.F., Manfio,G.P., Maranhao,A.Q.,
Martins,W.S., di Mauro,S.M.Z., de Medeiros,S.R.B., Meissner,R.D.V.,
Menck,C.F.M., Moreira,M.A.M., Nascimento,F.F., Nicolas,M.F.,
Oliveira,J.G., Oliveira,S.C., Paixao,R.F.C., Parente,J.A.,
Pedrosa,F.O., Pena,S.J.D., Perreira,J.O., Perreira,M.,
Pinto,L.S.R.C., Pinto,L.S., Porto,J.I.R., Potrich,D.P.,
Neto,C.E.R., Reis,A.M.M., Rigo,L.U., Rondinelli,E., dos
Santos,E.B.P., Santos,F.R., Schneider,M.P.C., Seuanez,H.N.,
Silva,A.M.R., da Silva,A.L.C., Silva,D.W., Silva,R., Simoes,I.C.,
Simon,D., Soares,C.M.A., Soares,R.B.A., Souza,E.M., Souza,K.R.L.,
Souza,R.C., Steffens,M.B.R., Steindel,M., Teixeira,S.R.,
Urmenyi,T., Vettore,A., Wassem,R., Zaha,A. and Simpson,A.J.G.
TITLE The complete genome sequence of Chromobacterium violaceum reveals
remarkable and exploitable bacterial adaptability
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 100 (20), 11660-11665 (2003)
PUBMED 14500782
REFERENCE 2 (bases 1 to 4751080)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4751080)
AUTHORS Vasconcelos,A.T.R., de Almeida,D.F., Almeida,F.C., de
Almeida,L.G.P., de Almeida,R., Goncalves,J.A.A., Andrade,E.M.,
Antonio,R.V., Araripe,J., de Araujo,M.F.F., Filho,S.A., Azevedo,V.,
Batista,A.J., Bataus,L.A.M., Batista,J.S., Belo,A., vander Berg,C.,
Blamey,J., Bogo,M., Bonato,S., Bordignon,J., Brito,C.A.,
Brocchi,M., Burity,H.A., Camargo,A.A., Cardoso,D.D.P.,
Carneiro,N.P., Carraro,D.M., Carvalho,C.M.B., Cascardo,J.C.M.,
Cavada,B.S., Chueire,L.M.O., Pasa,T.B.C., Duran,N., Fagundes,N.,
Falcao,C.L., Fantinatti,F., Farias,I.P., Felipe,M.S.S.,
Ferrari,L.P., Ferro,J.A., Ferro,M.I.T., Franco,G.R.,
Freitas,N.S.A., Furlan,L.R., Gazzinelli,R.T., Gomes,E.A.,
Goncalves,P.R., Grangeiro,T.B., Grattapaglia,D., Grisard,E.C.,
Guimaraes,C.T., Hanna,E.S., Hungria,M., Jardim,S.N., Laurino,J.,
Leoi,L.C.T., Fassarella,L., Lima,A., Loureiro,M.F., Lyra,M.C.P.,
Macedo,M., Madeira,H.M.F., Manfio,G.P., Maranhao,A.Q.,
Martins,W.S., di Mauro,S.M.Z., de Medeiros,S.R.B., Meissner,R.D.V.,
Menck,C.F.M., Moreira,M.A.M., Nascimento,F.F., Nicolas,M.F.,
Oliveira,J.G., Oliveira,S.C., Paixao,R.F.C., Parente,J.A.,
Pedrosa,F.O., Pena,S.J.D., Perreira,J.O., Perreira,M.,
Pinto,L.S.R.C., Pinto,L.S., Porto,J.I.R., Potrich,D.P.,
Neto,C.E.R., Reis,A.M.M., Rigo,L.U., Rondinelli,E., dos
Santos,E.B.P., Santos,F.R., Schneider,M.P.C., Seuanez,H.N.,
Silva,A.M.R., da Silva,A.L.C., Silva,D.W., Silva,R., Simoes,I.C.,
Simon,D., Soares,C.M.A., Soares,R.B.A., Souza,E.M., Souza,K.R.L.,
Souza,R.C., Steffens,M.B.R., Steindel,M., Teixeira,S.R.,
Urmenyi,T., Vettore,A., Wassem,R., Zaha,A. and Simpson,A.J.G.
TITLE Direct Submission
JOURNAL Submitted (22-JAN-2003) Labinfo, LNCC - Laboratorio Nacional de
Computacao Cientifica, Rua Getulio Vargas 333, Petropolis, RJ
25651070, Brazil
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE016825.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

421225 | 422698 | + | 1474 | 34495455 | CV_rRNA16s1 | - | 16S ribosomal RNA |

422942 | 423018 | + | 77 | 34495455 | CV_tRNAIleGAT1 | - | 14 Ile tRNA
|

423105 | 423180 | + | 76 | 34495455 | CV_tRNAAlaTGC1 | - | 02 Ala tRNA
|

423379 | 426318 | + | 2940 | 34495455 | CV_rRNA23s1 | - | 23S ribosomal RNA |

426319 | 426561 | + | 243 | 34495455 | CV_rRNA5s1 | - | 5S ribosomal RNA |

502190 | 503663 | + | 1474 | 34495455 | CV_rRNA16s2 | - | 16S ribosomal RNA |

503807 | 503883 | + | 77 | 34495455 | CV_tRNAIleGAT2 | - | 14 Ile tRNA
|

503896 | 503971 | + | 76 | 34495455 | CV_tRNAAlaTGC2 | - | 02 Ala tRNA
|

504171 | 507110 | + | 2940 | 34495455 | CV_rRNA23s2 | - | 23S ribosomal RNA |

507111 | 507350 | + | 240 | 34495455 | CV_rRNA5s2 | - | 5S ribosomal RNA |

682034 | 682118 | - | 85 | 34495455 | CV_tRNALeuCAA | - | 15 Leu tRNA
|

759824 | 759908 | + | 85 | 34495455 | CV_tRNATyrGTA1 | - | 18 Tyr tRNA
|

878775 | 878849 | - | 75 | 34495455 | CV_tRNAArgCCT | - | 11 Arg tRNA
|

955155 | 955230 | + | 76 | 34495455 | CV_tRNAAlaCGC | - | 02 Ala tRNA
|

975612 | 975696 | + | 85 | 34495455 | CV_tRNALeuGAG | - | 15 Leu tRNA
|

1006822 | 1006897 | + | 76 | 34495455 | CV_tRNAPheGAA1 | - | 17 Phe tRNA
|

1006904 | 1006979 | + | 76 | 34495455 | CV_tRNAPheGAA2 | - | 17 Phe tRNA
|

1058518 | 1058611 | + | 94 | 34495455 | CV_tRNASerGCT | - | 08 Ser tRNA
|

1058618 | 1058694 | + | 77 | 34495455 | CV_tRNAArgACG1 | - | 11 Arg tRNA
|

1058698 | 1058772 | + | 75 | 34495455 | CV_tRNAGluTTC1 | - | 04 Glu tRNA
|

1061741 | 1061815 | - | 75 | 34495455 | CV_tRNAGluTTC2 | - | 04 Glu tRNA
|

1061819 | 1061895 | - | 77 | 34495455 | CV_tRNAArgACG2 | - | 11 Arg tRNA
|

1061903 | 1061977 | - | 75 | 34495455 | CV_tRNAGluTTC3 | - | 04 Glu tRNA
|

1061983 | 1062059 | - | 77 | 34495455 | CV_tRNAArgACG3 | - | 11 Arg tRNA
|

1154028 | 1155501 | + | 1474 | 34495455 | CV_rRNA16s3 | - | 16S ribosomal RNA |

1155745 | 1155821 | + | 77 | 34495455 | CV_tRNAIleGAT3 | - | 14 Ile tRNA
|

1155908 | 1155983 | + | 76 | 34495455 | CV_tRNAAlaTGC3 | - | 02 Ala tRNA
|

1156183 | 1159122 | + | 2940 | 34495455 | CV_rRNA23s3 | - | 23S ribosomal RNA |

1159123 | 1159362 | + | 240 | 34495455 | CV_rRNA5s3 | - | 5S ribosomal RNA |

1263556 | 1263645 | - | 90 | 34495455 | CV_tRNASerCGA | - | 08 Ser tRNA
|

1273710 | 1273786 | + | 77 | 34495455 | CV_tRNAMetCAT1 | - | 16 Met tRNA
|

1377435 | 1377510 | + | 76 | 34495455 | CV_tRNAGlyGCC1 | - | 01 Gly tRNA
|

1377534 | 1377609 | + | 76 | 34495455 | CV_tRNAGlyGCC2 | - | 01 Gly tRNA
|

1377632 | 1377707 | + | 76 | 34495455 | CV_tRNAGlyGCC3 | - | 01 Gly tRNA
|

1377732 | 1377807 | + | 76 | 34495455 | CV_tRNAGlyGCC4 | - | 01 Gly tRNA
|

1377837 | 1377912 | + | 76 | 34495455 | CV_tRNAGlyGCC5 | - | 01 Gly tRNA
|

1377958 | 1378031 | + | 74 | 34495455 | CV_tRNACysGCA | - | 19 Cys tRNA
|

1387010 | 1387094 | + | 85 | 34495455 | CV_tRNALeuTAA | - | 15 Leu tRNA
|

1420085 | 1420161 | + | 77 | 34495455 | CV_tRNAValGAC | - | 13 Val tRNA
|

1427771 | 1427847 | + | 77 | 34495455 | CV_tRNAProGGG | - | 03 Pro tRNA
|

1433244 | 1433319 | - | 76 | 34495455 | CV_tRNAAsnGTT1 | - | 07 Asn tRNA
|

1433352 | 1433427 | - | 76 | 34495455 | CV_tRNAAsnGTT2 | - | 07 Asn tRNA
|

1433459 | 1433534 | - | 76 | 34495455 | CV_tRNAAsnGTT3 | - | 07 Asn tRNA
|

1646829 | 1648302 | + | 1474 | 34495455 | CV_rRNA16s4 | - | 16S ribosomal RNA |

1648546 | 1648622 | + | 77 | 34495455 | CV_tRNAIleGAT4 | - | 14 Ile tRNA
|

1648709 | 1648784 | + | 76 | 34495455 | CV_tRNAAlaTGC4 | - | 02 Ala tRNA
|

1648983 | 1651922 | + | 2940 | 34495455 | CV_rRNA23s4 | - | 23S ribosomal RNA |

1651923 | 1652162 | + | 240 | 34495455 | CV_rRNA5s4 | - | 5S ribosomal RNA |

1652253 | 1652371 | + | 119 | 34495455 | CV_r01 | - | 5S ribosomal RNA |

1746117 | 1746207 | + | 91 | 34495455 | CV_tRNASerGGA1 | - | 08 Ser tRNA
|

1746261 | 1746351 | + | 91 | 34495455 | CV_tRNASerGGA2 | - | 08 Ser tRNA
|

1978844 | 1978919 | + | 76 | 34495455 | CV_tRNAAsnGTT4 | - | 07 Asn tRNA
|

2094372 | 2094447 | - | 76 | 34495455 | CV_tRNAHisGTG1 | - | 09 His tRNA
|

2094474 | 2094549 | - | 76 | 34495455 | CV_tRNAHisGTG2 | - | 09 His tRNA
|

2094595 | 2094670 | - | 76 | 34495455 | CV_tRNAHisGTG3 | - | 09 His tRNA
|

2094698 | 2094774 | - | 77 | 34495455 | CV_tRNAArgTCT | - | 11 Arg tRNA
|

2094793 | 2094869 | - | 77 | 34495455 | CV_tRNAProTGG | - | 03 Pro tRNA
|

2511625 | 2511712 | - | 88 | 34495455 | CV_tRNASerTGA | - | 08 Ser tRNA
|

2747299 | 2747375 | - | 77 | 34495455 | CV_tRNAAspGTC1 | - | 06 Asp tRNA
|

2747383 | 2747458 | - | 76 | 34495455 | CV_tRNAValTAC1 | - | 13 Val tRNA
|

2853221 | 2853305 | + | 85 | 34495455 | CV_tRNALeuTAG | - | 15 Leu tRNA
|

3187082 | 3187157 | + | 76 | 34495455 | CV_tRNAThrTGT | - | 12 Thr tRNA
|

3257362 | 3257437 | + | 76 | 34495455 | CV_tRNAAlaGGC1 | - | 02 Ala tRNA
|

3262246 | 3262321 | + | 76 | 34495455 | CV_tRNAAlaGGC2 | - | 02 Ala tRNA
|

3262330 | 3262405 | + | 76 | 34495455 | CV_tRNAGluTTC4 | - | 04 Glu tRNA
|

3262417 | 3262492 | + | 76 | 34495455 | CV_tRNAAlaGGC3 | - | 02 Ala tRNA
|

3371481 | 3371720 | - | 240 | 34495455 | CV_rRNA5s5 | - | 5S ribosomal RNA |

3371721 | 3374660 | - | 2940 | 34495455 | CV_rRNA23s5 | - | 23S ribosomal RNA |

3374860 | 3374935 | - | 76 | 34495455 | CV_tRNAAlaTGC5 | - | 02 Ala tRNA
|

3374948 | 3375024 | - | 77 | 34495455 | CV_tRNAIleGAT5 | - | 14 Ile tRNA
|

3375168 | 3376641 | - | 1474 | 34495455 | CV_rRNA16s5 | - | 16S ribosomal RNA |

3472822 | 3472897 | + | 76 | 34495455 | CV_tRNAValTAC2 | - | 13 Val tRNA
|

3472910 | 3472986 | + | 77 | 34495455 | CV_tRNAAspGTC2 | - | 06 Asp tRNA
|

3473013 | 3473088 | + | 76 | 34495455 | CV_tRNAValTAC3 | - | 13 Val tRNA
|

3473101 | 3473177 | + | 77 | 34495455 | CV_tRNAAspGTC3 | - | 06 Asp tRNA
|

3473204 | 3473279 | + | 76 | 34495455 | CV_tRNAValTAC4 | - | 13 Val tRNA
|

3473292 | 3473368 | + | 77 | 34495455 | CV_tRNAAspGTC4 | - | 06 Asp tRNA
|

3473395 | 3473470 | + | 76 | 34495455 | CV_tRNAValTAC5 | - | 13 Val tRNA
|

3473483 | 3473559 | + | 77 | 34495455 | CV_tRNAAspGTC5 | - | 06 Asp tRNA
|

3473587 | 3473663 | + | 77 | 34495455 | CV_tRNAValCAC1 | - | 13 Val tRNA
|

3473670 | 3473746 | + | 77 | 34495455 | CV_tRNAAspGTC6 | - | 06 Asp tRNA
|

3473774 | 3473850 | + | 77 | 34495455 | CV_tRNAValCAC2 | - | 13 Val tRNA
|

3473857 | 3473933 | + | 77 | 34495455 | CV_tRNAAspGTC7 | - | 06 Asp tRNA
|

3622292 | 3622365 | + | 74 | 34495455 | CV_tRNAGlyCCC | - | 01 Gly tRNA
|

3820123 | 3820362 | - | 240 | 34495455 | CV_rRNA5s6 | - | 5S ribosomal RNA |

3820363 | 3823302 | - | 2940 | 34495455 | CV_rRNA23s6 | - | 23S ribosomal RNA |

3823501 | 3823576 | - | 76 | 34495455 | CV_tRNAAlaTGC6 | - | 02 Ala tRNA
|

3823663 | 3823739 | - | 77 | 34495455 | CV_tRNAIleGAT6 | - | 14 Ile tRNA
|

3823983 | 3825456 | - | 1474 | 34495455 | CV_rRNA16s6 | - | 16S ribosomal RNA |

3828836 | 3828922 | + | 87 | 34495455 | CV_tRNALeuCAG1 | - | 15 Leu tRNA
|

3828974 | 3829060 | + | 87 | 34495455 | CV_tRNALeuCAG2 | - | 15 Leu tRNA
|

3829094 | 3829180 | + | 87 | 34495455 | CV_tRNALeuCAG3 | - | 15 Leu tRNA
|

3829238 | 3829324 | + | 87 | 34495455 | CV_tRNALeuCAG4 | - | 15 Leu tRNA
|

3854547 | 3854622 | - | 76 | 34495455 | CV_tRNAGlnTTG1 | - | 05 Gln tRNA
|

3855180 | 3855255 | - | 76 | 34495455 | CV_tRNAThrCGT | - | 12 Thr tRNA
|

3855317 | 3855393 | - | 77 | 34495455 | CV_tRNAProCGG1 | - | 03 Pro tRNA
|

3855472 | 3855548 | - | 77 | 34495455 | CV_tRNAProCGG2 | - | 03 Pro tRNA
|

4059834 | 4059912 | - | 79 | 34495455 | CV_tRNAMetCAT2 | - | 16 Met tRNA
|

4244594 | 4244833 | - | 240 | 34495455 | CV_rRNA5s7 | - | 5S ribosomal RNA |

4244834 | 4247773 | - | 2940 | 34495455 | CV_rRNA23s7 | - | 23S ribosomal RNA |

4247972 | 4248047 | - | 76 | 34495455 | CV_tRNAAlaTGC7 | - | 02 Ala tRNA
|

4248134 | 4248210 | - | 77 | 34495455 | CV_tRNAIleGAT7 | - | 14 Ile tRNA
|

4248454 | 4249927 | - | 1474 | 34495455 | CV_rRNA16s7 | - | 16S ribosomal RNA |

4325718 | 4325794 | - | 77 | 34495455 | CV_tRNAMetCAT3 | - | 16 Met tRNA
|

4389268 | 4389342 | - | 75 | 34495455 | CV_tRNAGlnTTG2 | - | 05 Gln tRNA
|

4402077 | 4402153 | + | 77 | 34495455 | CV_tRNAArgCCG | - | 11 Arg tRNA
|

4434133 | 4434372 | - | 240 | 34495455 | CV_rRNA5s8 | - | 5S ribosomal RNA |

4434373 | 4437312 | - | 2940 | 34495455 | CV_rRNA23s8 | - | 23S ribosomal RNA |

4437511 | 4437586 | - | 76 | 34495455 | CV_tRNAAlaTGC8 | - | 02 Ala tRNA
|

4437673 | 4437749 | - | 77 | 34495455 | CV_tRNAIleGAT8 | - | 14 Ile tRNA
|

4437993 | 4439466 | - | 1474 | 34495455 | CV_rRNA16s8 | - | 16S ribosomal RNA |

4474196 | 4474272 | + | 77 | 34495455 | CV_tRNAMetCAT4 | - | 16 Met tRNA
|

4474308 | 4474384 | + | 77 | 34495455 | CV_tRNAMetCAT5 | - | 16 Met tRNA
|

4529616 | 4529690 | - | 75 | 34495455 | CV_tRNAThrGGT1 | - | 12 Thr tRNA
|

4532053 | 4532128 | - | 76 | 34495455 | CV_tRNATrpCCA | - | 20 Trp tRNA
|

4533370 | 4533444 | - | 75 | 34495455 | CV_tRNAThrGGT2 | - | 12 Thr tRNA
|

4533469 | 4533542 | - | 74 | 34495455 | CV_tRNAGlyTCC | - | 01 Gly tRNA
|

4533595 | 4533679 | - | 85 | 34495455 | CV_tRNATyrGTA2 | - | 18 Tyr tRNA
|

4586712 | 4586787 | - | 76 | 34495455 | CV_tRNALysTTT1 | - | 10 Lys tRNA
|

4586826 | 4586901 | - | 76 | 34495455 | CV_tRNALysCTT1 | - | 10 Lys tRNA
|

4586937 | 4587012 | - | 76 | 34495455 | CV_tRNALysTTT2 | - | 10 Lys tRNA
|

4587041 | 4587116 | - | 76 | 34495455 | CV_tRNALysCTT2 | - | 10 Lys tRNA
|

4587154 | 4587229 | - | 76 | 34495455 | CV_tRNALysTTT3 | - | 10 Lys tRNA
|