Материалы:NC 007958

LOCUS NC_007958 4892717 bp DNA circular BCT 14-APR-2006 DEFINITION Rhodopseudomonas palustris BisB5, complete genome. ACCESSION NC_007958 VERSION NC_007958.1 GI:91974482 KEYWORDS . SOURCE Rhodopseudomonas palustris BisB5 ORGANISM Rhodopseudomonas palustris BisB5 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas. REFERENCE 1 (bases 1 to 4892717) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A., Oda,Y., Harwood,C.S. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Rhodopseudomonas palustris BisB5 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4892717) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-APR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4892717) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A., Oda,Y., Harwood,C.S. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000283. URL -- http://www.jgi.doe.gov JGI Project ID: 4000372 Source DNA and bacteria available from Caroline S. Harwood (csh5@u.washington.edu) Contacts: Caroline S. Harwood (csh5@u.washington.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

81952 | 82028 | - | 77 | 91974482 | RPD_R0001 | - | 11 Arg tRNA
|

103759 | 103861 | - | 103 | 91974482 | RPD_R0002 | - | SRP RNA; RNA component of signal recognition particle |

198196 | 198282 | + | 87 | 91974482 | RPD_R0003 | - | 15 Leu tRNA
|

212220 | 212295 | - | 76 | 91974482 | RPD_R0004 | - | 02 Ala tRNA
|

307559 | 307635 | - | 77 | 91974482 | RPD_R0006 | - | 11 Arg tRNA
|

379446 | 379530 | - | 85 | 91974482 | RPD_R0007 | - | 15 Leu tRNA
|

403348 | 403467 | - | 120 | 91974482 | RPD_R0008 | - | 5S ribosomal RNA |

403572 | 406403 | - | 2832 | 91974482 | RPD_R0009 | - | 23S ribosomal RNA |

406806 | 406881 | - | 76 | 91974482 | RPD_R0010 | - | 02 Ala tRNA
|

406915 | 406991 | - | 77 | 91974482 | RPD_R0011 | - | 14 Ile tRNA
|

407217 | 408691 | - | 1475 | 91974482 | RPD_R0012 | - | 16S ribosomal RNA |

424369 | 424443 | - | 75 | 91974482 | RPD_R0013 | - | 04 Glu tRNA
|

524502 | 524576 | + | 75 | 91974482 | RPD_R0014 | - | 01 Gly tRNA
|

537564 | 537639 | - | 76 | 91974482 | RPD_R0015 | - | 12 Thr tRNA
|

663698 | 663787 | + | 90 | 91974482 | RPD_R0016 | - | 08 Ser tRNA
|

714109 | 714317 | + | 209 | 91974482 | RPD_R0017 | - | |

727425 | 727646 | - | 222 | 91974482 | RPD_R0018 | - | |

776811 | 776886 | - | 76 | 91974482 | RPD_R0019 | - | 02 Ala tRNA
|

785607 | 785805 | + | 199 | 91974482 | RPD_R0020 | - | |

852454 | 852530 | - | 77 | 91974482 | RPD_R0021 | - | 11 Arg tRNA
|

1026149 | 1026222 | + | 74 | 91974482 | RPD_R0022 | - | 01 Gly tRNA
|

1171800 | 1171889 | + | 90 | 91974482 | RPD_R0023 | - | 08 Ser tRNA
|

1410553 | 1410629 | + | 77 | 91974482 | RPD_R0024 | - | 03 Pro tRNA
|

1620308 | 1620384 | + | 77 | 91974482 | RPD_R0025 | - | 09 His tRNA
|

1629987 | 1630061 | - | 75 | 91974482 | RPD_R0026 | - | Xaa tRNA |

1676578 | 1676654 | + | 77 | 91974482 | RPD_R0027 | - | 16 Met tRNA
|

1946441 | 1946529 | - | 89 | 91974482 | RPD_R0028 | - | |

1946531 | 1946621 | - | 91 | 91974482 | RPD_R0029 | - | |

2369307 | 2369382 | + | 76 | 91974482 | RPD_R0030 | - | 10 Lys tRNA
|

2436981 | 2437051 | + | 71 | 91974482 | RPD_R0031 | - | 08 Ser tRNA
|

2437685 | 2437791 | + | 107 | 91974482 | RPD_R0032 | - | |

2565609 | 2565817 | - | 209 | 91974482 | RPD_R0033 | - | |

2565965 | 2566040 | - | 76 | 91974482 | RPD_R0034 | - | 19 Cys tRNA
|

2591019 | 2591234 | - | 216 | 91974482 | RPD_R0035 | - | |

2593935 | 2594143 | + | 209 | 91974482 | RPD_R0036 | - | |

2681517 | 2681606 | - | 90 | 91974482 | RPD_R0037 | - | 08 Ser tRNA
|

2689809 | 2689902 | - | 94 | 91974482 | RPD_R0038 | - | 08 Ser tRNA
|

2829215 | 2829289 | - | 75 | 91974482 | RPD_R0039 | - | 04 Glu tRNA
|

2833690 | 2833766 | + | 77 | 91974482 | RPD_R0040 | - | 03 Pro tRNA
|

2850410 | 2850486 | - | 77 | 91974482 | RPD_R0041 | - | 11 Arg tRNA
|

2884542 | 2884615 | + | 74 | 91974482 | RPD_R0042 | - | 19 Cys tRNA
|

2886320 | 2886394 | - | 75 | 91974482 | RPD_R0043 | - | 07 Asn tRNA
|

2922258 | 2922333 | - | 76 | 91974482 | RPD_R0044 | - | 10 Lys tRNA
|

3003929 | 3004006 | + | 78 | 91974482 | RPD_R0045 | - | 03 Pro tRNA
|

3216567 | 3216643 | - | 77 | 91974482 | RPD_R0046 | - | 06 Asp tRNA
|

3219206 | 3219282 | + | 77 | 91974482 | RPD_R0047 | - | 13 Val tRNA
|

3226277 | 3226361 | - | 85 | 91974482 | RPD_R0048 | - | 15 Leu tRNA
|

3255793 | 3256000 | - | 208 | 91974482 | RPD_R0049 | - | |

3256310 | 3256518 | + | 209 | 91974482 | RPD_R0050 | - | |

3259915 | 3260113 | - | 199 | 91974482 | RPD_R0051 | - | |

3427966 | 3428050 | - | 85 | 91974482 | RPD_R0052 | - | 15 Leu tRNA
|

3446452 | 3446528 | + | 77 | 91974482 | RPD_R0053 | - | 11 Arg tRNA
|

3553731 | 3553806 | - | 76 | 91974482 | RPD_R0054 | - | 20 Trp tRNA
|

3563784 | 3563857 | - | 74 | 91974482 | RPD_R0055 | - | 01 Gly tRNA
|

3585880 | 3585965 | - | 86 | 91974482 | RPD_R0056 | - | 18 Tyr tRNA
|

3588448 | 3588522 | - | 75 | 91974482 | RPD_R0057 | - | 12 Thr tRNA
|

3647447 | 3647533 | - | 87 | 91974482 | RPD_R0058 | - | 15 Leu tRNA
|

3701577 | 3701650 | + | 74 | 91974482 | RPD_R0059 | - | 05 Gln tRNA
|

3723648 | 3724002 | + | 355 | 91974482 | RPD_R0060 | - | tmRNA |

3783877 | 3784294 | + | 418 | 91974482 | RPD_R0061 | - | RNA component of RNaseP |

3812110 | 3812251 | + | 142 | 91974482 | RPD_R0062 | - | |

4091273 | 4091348 | - | 76 | 91974482 | RPD_R0063 | - | 16 Met tRNA
|

4111391 | 4111465 | + | 75 | 91974482 | RPD_R0064 | - | 13 Val tRNA
|

4407931 | 4408007 | - | 77 | 91974482 | RPD_R0065 | - | 16 Met tRNA
|

4547019 | 4547138 | - | 120 | 91974482 | RPD_R0066 | - | 5S ribosomal RNA |

4547243 | 4550074 | - | 2832 | 91974482 | RPD_R0067 | - | 23S ribosomal RNA |

4550477 | 4550552 | - | 76 | 91974482 | RPD_R0068 | - | 02 Ala tRNA
|

4550586 | 4550662 | - | 77 | 91974482 | RPD_R0069 | - | 14 Ile tRNA
|

4550888 | 4552362 | - | 1475 | 91974482 | RPD_R0070 | - | 16S ribosomal RNA |

4739264 | 4739339 | - | 76 | 91974482 | RPD_R0071 | - | 17 Phe tRNA
|

4747188 | 4747262 | + | 75 | 91974482 | RPD_R0072 | - | 12 Thr tRNA
|

4760460 | 4760534 | - | 75 | 91974482 | RPD_R0073 | - | 05 Gln tRNA
|

4820132 | 4820206 | - | 75 | 91974482 | RPD_R0074 | - | 13 Val tRNA
|

4855579 | 4855783 | + | 205 | 91974482 | RPD_R0075 | - |