Материалы:NC 007492

LOCUS NC_007492 6438405 bp DNA circular BCT 04-APR-2006 DEFINITION Pseudomonas fluorescens PfO-1, complete genome. ACCESSION NC_007492 VERSION NC_007492.1 GI:77456228 KEYWORDS . SOURCE Pseudomonas fluorescens PfO-1 ORGANISM Pseudomonas fluorescens PfO-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 6438405) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Kyripides,N., Anderson,I. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Pseudomonas fluorescens PfO-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 6438405) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-OCT-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6438405) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (08-AUG-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000094. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Mark Silby (mark.silby@tufts.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

121476 | 123002 | + | 1527 | 77456228 | Pfl_R1 | - | 16S ribosomal RNA |

123085 | 123161 | + | 77 | 77456228 | Pfl_R2 | - | 14 Ile tRNA
|

123192 | 123267 | + | 76 | 77456228 | Pfl_R3 | - | 02 Ala tRNA
|

123512 | 126403 | + | 2892 | 77456228 | Pfl_R4 | - | 23S ribosomal RNA |

126568 | 126682 | + | 115 | 77456228 | Pfl_R5 | - | 5S ribosomal RNA |

126790 | 126904 | + | 115 | 77456228 | Pfl_R6 | - | 5S ribosomal RNA |

224796 | 224872 | - | 77 | 77456228 | Pfl_R7 | - | 11 Arg tRNA
|

353031 | 353106 | - | 76 | 77456228 | Pfl_R8 | - | 12 Thr tRNA
|

363599 | 363674 | - | 76 | 77456228 | Pfl_R9 | - | 17 Phe tRNA
|

617488 | 617574 | - | 87 | 77456228 | Pfl_R10 | - | 15 Leu tRNA
|

617756 | 617842 | - | 87 | 77456228 | Pfl_R11 | - | 15 Leu tRNA
|

803037 | 804563 | + | 1527 | 77456228 | Pfl_R12 | - | 16S ribosomal RNA |

804646 | 804722 | + | 77 | 77456228 | Pfl_R13 | - | 14 Ile tRNA
|

804753 | 804828 | + | 76 | 77456228 | Pfl_R14 | - | 02 Ala tRNA
|

805073 | 807964 | + | 2892 | 77456228 | Pfl_R15 | - | 23S ribosomal RNA |

808130 | 808244 | + | 115 | 77456228 | Pfl_R16 | - | 5S ribosomal RNA |

878831 | 879220 | - | 390 | 77456228 | Pfl_R17 | - | tmRNA |

911327 | 911412 | + | 86 | 77456228 | Pfl_R18 | - | 15 Leu tRNA
|

911510 | 911586 | + | 77 | 77456228 | Pfl_R19 | - | 16 Met tRNA
|

920579 | 920654 | + | 76 | 77456228 | Pfl_R20 | - | 12 Thr tRNA
|

1365707 | 1365783 | - | 77 | 77456228 | Pfl_R21 | - | 16 Met tRNA
|

1365987 | 1366063 | - | 77 | 77456228 | Pfl_R22 | - | 16 Met tRNA
|

1506385 | 1506458 | - | 74 | 77456228 | Pfl_R23 | - | 01 Gly tRNA
|

1547918 | 1548007 | + | 90 | 77456228 | Pfl_R24 | - | 08 Ser tRNA
|

1860616 | 1860691 | + | 76 | 77456228 | Pfl_R25 | - | 13 Val tRNA
|

1860711 | 1860787 | + | 77 | 77456228 | Pfl_R26 | - | 06 Asp tRNA
|

1860978 | 1861053 | + | 76 | 77456228 | Pfl_R27 | - | 13 Val tRNA
|

1861073 | 1861149 | + | 77 | 77456228 | Pfl_R28 | - | 06 Asp tRNA
|

1938174 | 1938263 | + | 90 | 77456228 | Pfl_R29 | - | 08 Ser tRNA
|

2014278 | 2014394 | + | 117 | 77456228 | Pfl_R30 | - | SRP RNA; RNA component of signal recognition particle |

2135240 | 2135315 | - | 76 | 77456228 | Pfl_R31 | - | 07 Asn tRNA
|

2144196 | 2144271 | + | 76 | 77456228 | Pfl_R32 | - | 02 Ala tRNA
|

2144351 | 2144426 | + | 76 | 77456228 | Pfl_R33 | - | 04 Glu tRNA
|

2144480 | 2144555 | + | 76 | 77456228 | Pfl_R34 | - | 02 Ala tRNA
|

2144634 | 2144709 | + | 76 | 77456228 | Pfl_R35 | - | 04 Glu tRNA
|

2176406 | 2176481 | + | 76 | 77456228 | Pfl_R36 | - | 13 Val tRNA
|

2176537 | 2176613 | + | 77 | 77456228 | Pfl_R37 | - | 06 Asp tRNA
|

2176707 | 2176783 | + | 77 | 77456228 | Pfl_R38 | - | 06 Asp tRNA
|

2184300 | 2184376 | + | 77 | 77456228 | Pfl_R39 | - | 13 Val tRNA
|

2207840 | 2207916 | + | 77 | 77456228 | Pfl_R40 | - | 03 Pro tRNA
|

2549539 | 2551065 | + | 1527 | 77456228 | Pfl_R41 | - | 16S ribosomal RNA |

2551148 | 2551224 | + | 77 | 77456228 | Pfl_R42 | - | 14 Ile tRNA
|

2551255 | 2551330 | + | 76 | 77456228 | Pfl_R43 | - | 02 Ala tRNA
|

2551575 | 2554466 | + | 2892 | 77456228 | Pfl_R44 | - | 23S ribosomal RNA |

2554632 | 2554746 | + | 115 | 77456228 | Pfl_R45 | - | 5S ribosomal RNA |

2710914 | 2710988 | - | 75 | 77456228 | Pfl_R46 | - | 05 Gln tRNA
|

2845505 | 2845592 | - | 88 | 77456228 | Pfl_R47 | - | 08 Ser tRNA
|

3506452 | 3506538 | - | 87 | 77456228 | Pfl_R48 | - | 15 Leu tRNA
|

3506734 | 3506807 | - | 74 | 77456228 | Pfl_R49 | - | 19 Cys tRNA
|

3506854 | 3506929 | - | 76 | 77456228 | Pfl_R50 | - | 01 Gly tRNA
|

4181262 | 4181337 | - | 76 | 77456228 | Pfl_R51 | - | Xaa tRNA |

4188207 | 4188282 | - | 76 | 77456228 | Pfl_R52 | - | 09 His tRNA
|

4188359 | 4188443 | - | 85 | 77456228 | Pfl_R53 | - | 15 Leu tRNA
|

4188502 | 4188577 | - | 76 | 77456228 | Pfl_R54 | - | 09 His tRNA
|

4188610 | 4188686 | - | 77 | 77456228 | Pfl_R55 | - | 11 Arg tRNA
|

4416516 | 4416630 | - | 115 | 77456228 | Pfl_R56 | - | 5S ribosomal RNA |

4416795 | 4419686 | - | 2892 | 77456228 | Pfl_R57 | - | 23S ribosomal RNA |

4419931 | 4420006 | - | 76 | 77456228 | Pfl_R58 | - | 02 Ala tRNA
|

4420037 | 4420113 | - | 77 | 77456228 | Pfl_R59 | - | 14 Ile tRNA
|

4420196 | 4421722 | - | 1527 | 77456228 | Pfl_R60 | - | 16S ribosomal RNA |

4728952 | 4729027 | - | 76 | 77456228 | Pfl_R61 | - | 01 Gly tRNA
|

4729030 | 4729105 | - | 76 | 77456228 | Pfl_R62 | - | 04 Glu tRNA
|

4729163 | 4729238 | - | 76 | 77456228 | Pfl_R63 | - | 01 Gly tRNA
|

4729241 | 4729316 | - | 76 | 77456228 | Pfl_R64 | - | 04 Glu tRNA
|

4729421 | 4729496 | - | 76 | 77456228 | Pfl_R65 | - | 01 Gly tRNA
|

4729499 | 4729574 | - | 76 | 77456228 | Pfl_R66 | - | 04 Glu tRNA
|

4816076 | 4816152 | - | 77 | 77456228 | Pfl_R67 | - | 11 Arg tRNA
|

4820541 | 4820617 | - | 77 | 77456228 | Pfl_R68 | - | 11 Arg tRNA
|

4820690 | 4820766 | - | 77 | 77456228 | Pfl_R69 | - | 11 Arg tRNA
|

4820839 | 4820915 | - | 77 | 77456228 | Pfl_R70 | - | 11 Arg tRNA
|

4821023 | 4821113 | - | 91 | 77456228 | Pfl_R71 | - | 08 Ser tRNA
|

4959539 | 4959614 | - | 76 | 77456228 | Pfl_R72 | - | 10 Lys tRNA
|

5221822 | 5221906 | + | 85 | 77456228 | Pfl_R73 | - | 15 Leu tRNA
|

5286536 | 5286826 | - | 291 | 77456228 | Pfl_R74 | - | RNA component of RNaseP |

5356918 | 5356992 | + | 75 | 77456228 | Pfl_R75 | - | 05 Gln tRNA
|

5364391 | 5364467 | + | 77 | 77456228 | Pfl_R76 | - | 16 Met tRNA
|

5393082 | 5393196 | - | 115 | 77456228 | Pfl_R77 | - | 5S ribosomal RNA |

5393352 | 5396243 | - | 2892 | 77456228 | Pfl_R78 | - | 23S ribosomal RNA |

5396488 | 5396563 | - | 76 | 77456228 | Pfl_R79 | - | 02 Ala tRNA
|

5396594 | 5396670 | - | 77 | 77456228 | Pfl_R80 | - | 14 Ile tRNA
|

5396753 | 5398279 | - | 1527 | 77456228 | Pfl_R81 | - | 16S ribosomal RNA |

5451112 | 5451188 | - | 77 | 77456228 | Pfl_R82 | - | 03 Pro tRNA
|

5451286 | 5451361 | - | 76 | 77456228 | Pfl_R83 | - | 10 Lys tRNA
|

5451367 | 5451443 | - | 77 | 77456228 | Pfl_R84 | - | 03 Pro tRNA
|

5451453 | 5451528 | - | 76 | 77456228 | Pfl_R85 | - | 07 Asn tRNA
|

5722233 | 5722308 | - | 76 | 77456228 | Pfl_R86 | - | 20 Trp tRNA
|

5723641 | 5723716 | - | 76 | 77456228 | Pfl_R87 | - | 12 Thr tRNA
|

5723743 | 5723816 | - | 74 | 77456228 | Pfl_R88 | - | 01 Gly tRNA
|

5723842 | 5723926 | - | 85 | 77456228 | Pfl_R89 | - | 18 Tyr tRNA
|

5726344 | 5726458 | - | 115 | 77456228 | Pfl_R90 | - | 5S ribosomal RNA |

5726624 | 5729515 | - | 2892 | 77456228 | Pfl_R91 | - | 23S ribosomal RNA |

5729760 | 5729835 | - | 76 | 77456228 | Pfl_R92 | - | 02 Ala tRNA
|

5729866 | 5729942 | - | 77 | 77456228 | Pfl_R93 | - | 14 Ile tRNA
|

5730025 | 5731551 | - | 1527 | 77456228 | Pfl_R94 | - | 16S ribosomal RNA |

5791565 | 5791641 | + | 77 | 77456228 | Pfl_R95 | - | 16 Met tRNA
|