Материалы:NC 008709

LOCUS NC_008709 4559598 bp DNA circular BCT 08-AUG-2007 DEFINITION Psychromonas ingrahamii 37, complete genome. ACCESSION NC_008709 VERSION NC_008709.1 GI:119943794 KEYWORDS . SOURCE Psychromonas ingrahamii 37 ORGANISM Psychromonas ingrahamii 37 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Psychromonadaceae; Psychromonas. REFERENCE 1 (bases 1 to 4559598) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Staley,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Psychromonas ingrahamii 37 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4559598) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-JAN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4559598) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Staley,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000510. URL -- http://www.jgi.doe.gov JGI Project ID: 4000833 Source DNA and bacteria available from James Staley (jstaley@u.washington.edu) Contacts: James Staley (jstaley@u.washington.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

137 | 1675 | + | 1539 | 119943794 | Ping_R0001 | - | 16S ribosomal RNA |

1822 | 1898 | + | 77 | 119943794 | Ping_R0002 | - | 14 Ile tRNA
|

1949 | 2024 | + | 76 | 119943794 | Ping_R0003 | - | 02 Ala tRNA
|

2504 | 5395 | + | 2892 | 119943794 | Ping_R0004 | - | 23S ribosomal RNA |

5697 | 5812 | + | 116 | 119943794 | Ping_R0005 | - | 5S ribosomal RNA |

91410 | 92948 | + | 1539 | 119943794 | Ping_R0006 | - | 16S ribosomal RNA |

93088 | 93163 | + | 76 | 119943794 | Ping_R0007 | - | 04 Glu tRNA
|

93714 | 96605 | + | 2892 | 119943794 | Ping_R0008 | - | 23S ribosomal RNA |

96807 | 96922 | + | 116 | 119943794 | Ping_R0009 | - | 5S ribosomal RNA |

275625 | 275700 | + | 76 | 119943794 | Ping_R0010 | - | 12 Thr tRNA
|

275711 | 275794 | + | 84 | 119943794 | Ping_R0011 | - | 18 Tyr tRNA
|

275906 | 275980 | + | 75 | 119943794 | Ping_R0012 | - | 01 Gly tRNA
|

296678 | 298216 | + | 1539 | 119943794 | Ping_R0013 | - | 16S ribosomal RNA |

298420 | 298496 | + | 77 | 119943794 | Ping_R0014 | - | 14 Ile tRNA
|

298547 | 298622 | + | 76 | 119943794 | Ping_R0015 | - | 02 Ala tRNA
|

299135 | 302026 | + | 2892 | 119943794 | Ping_R0016 | - | 23S ribosomal RNA |

302228 | 302343 | + | 116 | 119943794 | Ping_R0017 | - | 5S ribosomal RNA |

302424 | 302543 | + | 120 | 119943794 | Ping_R0017a | - | 5S ribosomal RNA |

302550 | 302625 | + | 76 | 119943794 | Ping_R0018 | - | 12 Thr tRNA
|

409144 | 409220 | - | 77 | 119943794 | Ping_R0019 | - | 16 Met tRNA
|

481020 | 481095 | - | 76 | 119943794 | Ping_R0020 | - | 17 Phe tRNA
|

481150 | 481225 | - | 76 | 119943794 | Ping_R0021 | - | 12 Thr tRNA
|

481307 | 481382 | - | 76 | 119943794 | Ping_R0022 | - | 17 Phe tRNA
|

507130 | 507214 | + | 85 | 119943794 | Ping_R0023 | - | 15 Leu tRNA
|

629300 | 629376 | - | 77 | 119943794 | Ping_R0024 | - | 06 Asp tRNA
|

629459 | 629535 | - | 77 | 119943794 | Ping_R0025 | - | 06 Asp tRNA
|

629795 | 629871 | - | 77 | 119943794 | Ping_R0026 | - | 06 Asp tRNA
|

629980 | 630056 | - | 77 | 119943794 | Ping_R0027 | - | 06 Asp tRNA
|

630198 | 630274 | - | 77 | 119943794 | Ping_R0028 | - | 06 Asp tRNA
|

646011 | 646086 | + | 76 | 119943794 | Ping_R0029 | - | 20 Trp tRNA
|

740891 | 742429 | + | 1539 | 119943794 | Ping_R0030 | - | 16S ribosomal RNA |

742633 | 742709 | + | 77 | 119943794 | Ping_R0031 | - | 14 Ile tRNA
|

742760 | 742835 | + | 76 | 119943794 | Ping_R0032 | - | 02 Ala tRNA
|

743315 | 746206 | + | 2892 | 119943794 | Ping_R0033 | - | 23S ribosomal RNA |

746513 | 746628 | + | 116 | 119943794 | Ping_R0034 | - | 5S ribosomal RNA |

922914 | 922989 | + | 76 | 119943794 | Ping_R0035 | - | 10 Lys tRNA
|

923154 | 923229 | + | 76 | 119943794 | Ping_R0036 | - | 10 Lys tRNA
|

923325 | 923400 | + | 76 | 119943794 | Ping_R0037 | - | 10 Lys tRNA
|

923510 | 923585 | + | 76 | 119943794 | Ping_R0038 | - | 10 Lys tRNA
|

923681 | 923756 | + | 76 | 119943794 | Ping_R0039 | - | 10 Lys tRNA
|

1017902 | 1017986 | + | 85 | 119943794 | Ping_R0040 | - | 15 Leu tRNA
|

1033433 | 1034971 | + | 1539 | 119943794 | Ping_R0042 | - | 16S ribosomal RNA |

1035169 | 1035244 | + | 76 | 119943794 | Ping_R0043 | - | 04 Glu tRNA
|

1035795 | 1038686 | + | 2892 | 119943794 | Ping_R0044 | - | 23S ribosomal RNA |

1038887 | 1039004 | + | 118 | 119943794 | Ping_R0045 | - | 5S ribosomal RNA |

1110422 | 1110497 | - | 76 | 119943794 | Ping_R0046 | - | 11 Arg tRNA
|

1180465 | 1180540 | + | 76 | 119943794 | Ping_R0047 | - | 07 Asn tRNA
|

1180819 | 1180894 | + | 76 | 119943794 | Ping_R0048 | - | 07 Asn tRNA
|

1181095 | 1181170 | + | 76 | 119943794 | Ping_R0049 | - | 07 Asn tRNA
|

1181425 | 1181500 | + | 76 | 119943794 | Ping_R0050 | - | 07 Asn tRNA
|

1182466 | 1182542 | + | 77 | 119943794 | Ping_R0051 | - | 16 Met tRNA
|

1182588 | 1182664 | + | 77 | 119943794 | Ping_R0052 | - | 16 Met tRNA
|

1182710 | 1182786 | + | 77 | 119943794 | Ping_R0053 | - | 16 Met tRNA
|

1182832 | 1182908 | + | 77 | 119943794 | Ping_R0054 | - | 16 Met tRNA
|

1182954 | 1183030 | + | 77 | 119943794 | Ping_R0055 | - | 16 Met tRNA
|

1183076 | 1183152 | + | 77 | 119943794 | Ping_R0056 | - | 16 Met tRNA
|

1183198 | 1183274 | + | 77 | 119943794 | Ping_R0057 | - | 16 Met tRNA
|

1192694 | 1194232 | + | 1539 | 119943794 | Ping_R0058 | - | 16S ribosomal RNA |

1194430 | 1194505 | + | 76 | 119943794 | Ping_R0059 | - | 04 Glu tRNA
|

1195044 | 1197935 | + | 2892 | 119943794 | Ping_R0060 | - | 23S ribosomal RNA |

1198129 | 1198244 | + | 116 | 119943794 | Ping_R0061 | - | 5S ribosomal RNA |

1375887 | 1375970 | - | 84 | 119943794 | Ping_R0062 | - | 18 Tyr tRNA
|

1469418 | 1469722 | + | 305 | 119943794 | Ping_R0063 | - | RNA component of RNaseP |

1484301 | 1484391 | + | 91 | 119943794 | Ping_R0064 | - | 08 Ser tRNA
|

1484810 | 1484900 | + | 91 | 119943794 | Ping_R0065 | - | 08 Ser tRNA
|

1488721 | 1488796 | + | 76 | 119943794 | Ping_R0066 | - | 01 Gly tRNA
|

1488812 | 1488885 | + | 74 | 119943794 | Ping_R0067 | - | 19 Cys tRNA
|

1488900 | 1488985 | + | 86 | 119943794 | Ping_R0068 | - | 15 Leu tRNA
|

1611957 | 1612033 | - | 77 | 119943794 | Ping_R0069 | - | 16 Met tRNA
|

1612152 | 1612236 | - | 85 | 119943794 | Ping_R0070 | - | 15 Leu tRNA
|

1612244 | 1612318 | - | 75 | 119943794 | Ping_R0071 | - | 05 Gln tRNA
|

1612455 | 1612529 | - | 75 | 119943794 | Ping_R0072 | - | 05 Gln tRNA
|

1612584 | 1612668 | - | 85 | 119943794 | Ping_R0073 | - | 15 Leu tRNA
|

1612774 | 1612850 | - | 77 | 119943794 | Ping_R0074 | - | 16 Met tRNA
|

1957924 | 1958274 | - | 351 | 119943794 | Ping_R0075 | - | tmRNA |

1981065 | 1981140 | - | 76 | 119943794 | Ping_R0076 | - | 02 Ala tRNA
|

1982968 | 1983043 | + | 76 | 119943794 | Ping_R0077 | - | 13 Val tRNA
|

1983149 | 1983224 | + | 76 | 119943794 | Ping_R0078 | - | 13 Val tRNA
|

1983330 | 1983405 | + | 76 | 119943794 | Ping_R0079 | - | 13 Val tRNA
|

1983568 | 1983643 | + | 76 | 119943794 | Ping_R0080 | - | 13 Val tRNA
|

1983804 | 1983879 | + | 76 | 119943794 | Ping_R0081 | - | 13 Val tRNA
|

1984042 | 1984117 | + | 76 | 119943794 | Ping_R0082 | - | 13 Val tRNA
|

1984280 | 1984355 | + | 76 | 119943794 | Ping_R0083 | - | 13 Val tRNA
|

2402491 | 2402606 | - | 116 | 119943794 | Ping_R0084 | - | SRP RNA |

2727441 | 2727526 | - | 86 | 119943794 | Ping_R0085 | - | 15 Leu tRNA
|

2727851 | 2727936 | - | 86 | 119943794 | Ping_R0086 | - | 15 Leu tRNA
|

2756289 | 2756379 | - | 91 | 119943794 | Ping_R0087 | - | 08 Ser tRNA
|

2870119 | 2870206 | - | 88 | 119943794 | Ping_R0088 | - | 08 Ser tRNA
|

2928250 | 2928365 | - | 116 | 119943794 | Ping_R0089 | - | 5S ribosomal RNA |

2928672 | 2931563 | - | 2892 | 119943794 | Ping_R0090 | - | 23S ribosomal RNA |

2932194 | 2933732 | - | 1539 | 119943794 | Ping_R0091 | - | 16S ribosomal RNA |

3013781 | 3013856 | + | 76 | 119943794 | Ping_R0092 | - | 13 Val tRNA
|

3122070 | 3122146 | - | 77 | 119943794 | Ping_R0093 | - | 03 Pro tRNA
|

3122307 | 3122391 | - | 85 | 119943794 | Ping_R0094 | - | 15 Leu tRNA
|

3122422 | 3122497 | - | 76 | 119943794 | Ping_R0095 | - | 09 His tRNA
|

3170682 | 3170758 | - | 77 | 119943794 | Ping_R0096 | - | 11 Arg tRNA
|

3171323 | 3171399 | - | 77 | 119943794 | Ping_R0097 | - | 03 Pro tRNA
|

3174236 | 3174312 | - | 77 | 119943794 | Ping_R0098 | - | 03 Pro tRNA
|

3227380 | 3227466 | + | 87 | 119943794 | Ping_R0099 | - | 15 Leu tRNA
|

3255405 | 3255480 | + | 76 | 119943794 | Ping_R0100 | - | Xaa tRNA |

3395902 | 3396017 | - | 116 | 119943794 | Ping_R0101 | - | 5S ribosomal RNA |

3396320 | 3399211 | - | 2892 | 119943794 | Ping_R0102 | - | 23S ribosomal RNA |

3399843 | 3401379 | - | 1537 | 119943794 | Ping_R0103 | - | 16S ribosomal RNA |

3944298 | 3944413 | - | 116 | 119943794 | Ping_R0104 | - | 5S ribosomal RNA |

3944718 | 3947609 | - | 2892 | 119943794 | Ping_R0105 | - | 23S ribosomal RNA |

3948158 | 3948233 | - | 76 | 119943794 | Ping_R0106 | - | 04 Glu tRNA
|

3948373 | 3949911 | - | 1539 | 119943794 | Ping_R0107 | - | 16S ribosomal RNA |

4051006 | 4051121 | - | 116 | 119943794 | Ping_R0108 | - | 5S ribosomal RNA |

4051421 | 4054312 | - | 2892 | 119943794 | Ping_R0109 | - | 23S ribosomal RNA |

4054943 | 4056481 | - | 1539 | 119943794 | Ping_R0110 | - | 16S ribosomal RNA |

4122509 | 4122584 | - | 76 | 119943794 | Ping_R0111 | - | 01 Gly tRNA
|

4122618 | 4122693 | - | 76 | 119943794 | Ping_R0112 | - | 01 Gly tRNA
|

4122737 | 4122812 | - | 76 | 119943794 | Ping_R0113 | - | 01 Gly tRNA
|

4171471 | 4171547 | - | 77 | 119943794 | Ping_R0114 | - | 11 Arg tRNA
|

4171627 | 4171703 | - | 77 | 119943794 | Ping_R0115 | - | 11 Arg tRNA
|

4171766 | 4171842 | - | 77 | 119943794 | Ping_R0116 | - | 11 Arg tRNA
|

4171861 | 4171953 | - | 93 | 119943794 | Ping_R0117 | - | 08 Ser tRNA
|

4222013 | 4222089 | - | 77 | 119943794 | Ping_R0118 | - | 03 Pro tRNA
|

4222129 | 4222204 | - | 76 | 119943794 | Ping_R0119 | - | 09 His tRNA
|

4222246 | 4222322 | - | 77 | 119943794 | Ping_R0120 | - | 11 Arg tRNA
|