Материалы:NC 008610

LOCUS NC_008610 1160782 bp DNA circular BCT 26-FEB-2007 DEFINITION Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), complete genome. ACCESSION NC_008610 VERSION NC_008610.1 GI:118602060 KEYWORDS . SOURCE Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) ORGANISM Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts. REFERENCE 1 (bases 1 to 1160782) AUTHORS Newton,I.L., Woyke,T., Auchtung,T.A., Dilly,G.F., Dutton,R.J., Fisher,M.C., Fontanez,K.M., Lau,E., Stewart,F.J., Richardson,P.M., Barry,K.W., Saunders,E., Detter,J.C., Wu,D., Eisen,J.A. and Cavanaugh,C.M. CONSRTM US DOE Joint Genome Institute TITLE The Calyptogena magnifica chemoautotrophic symbiont genome JOURNAL Science 315 (5814), 998-1000 (2007) PUBMED 17303757 REFERENCE 2 (bases 1 to 1160782) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-DEC-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1160782) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (29-NOV-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000488. URL -- http://www.jgi.doe.gov JGI Project ID: 4000245 Source DNA and bacteria available from Colleen M. Cavanaugh (cavanaug@fas.harvard.edu) Contacts: Colleen M. Cavanaugh (cavanaug@fas.harvard.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

47921 | 47996 | + | 76 | 118602060 | Rmag_R0001 | - | 12 Thr tRNA
|

53269 | 53344 | + | 76 | 118602060 | Rmag_R0002 | - | 17 Phe tRNA
|

60338 | 60414 | + | 77 | 118602060 | Rmag_R0003 | - | 16 Met tRNA
|

71406 | 71482 | + | 77 | 118602060 | Rmag_R0004 | - | 16 Met tRNA
|

127740 | 127816 | - | 77 | 118602060 | Rmag_R0005 | - | 16 Met tRNA
|

130754 | 130828 | - | 75 | 118602060 | Rmag_R0006 | - | 05 Gln tRNA
|

177719 | 177792 | - | 74 | 118602060 | Rmag_R0007 | - | 19 Cys tRNA
|

177865 | 177940 | - | 76 | 118602060 | Rmag_R0008 | - | 01 Gly tRNA
|

178612 | 178688 | - | 77 | 118602060 | Rmag_R0009 | - | 11 Arg tRNA
|

295585 | 295671 | + | 87 | 118602060 | Rmag_R0010 | - | 15 Leu tRNA
|

355140 | 355215 | + | 76 | 118602060 | Rmag_R0011 | - | 02 Ala tRNA
|

355237 | 355311 | + | 75 | 118602060 | Rmag_R0012 | - | 04 Glu tRNA
|

355375 | 355449 | + | 75 | 118602060 | Rmag_R0013 | - | 04 Glu tRNA
|

440344 | 440419 | - | 76 | 118602060 | Rmag_R0014 | - | 09 His tRNA
|

442219 | 442295 | - | 77 | 118602060 | Rmag_R0015 | - | 11 Arg tRNA
|

442344 | 442420 | - | 77 | 118602060 | Rmag_R0016 | - | 03 Pro tRNA
|

463030 | 463105 | + | 76 | 118602060 | Rmag_R0017 | - | 07 Asn tRNA
|

470448 | 470524 | - | 77 | 118602060 | Rmag_R0018 | - | 11 Arg tRNA
|

471419 | 471495 | + | 77 | 118602060 | Rmag_R0019 | - | 13 Val tRNA
|

514527 | 514641 | - | 115 | 118602060 | Rmag_R0020 | - | SRP RNA; RNA component of signal recognition particle |

621148 | 621235 | - | 88 | 118602060 | Rmag_R0021 | - | 08 Ser tRNA
|

645473 | 645548 | - | 76 | 118602060 | Rmag_R0022 | - | 10 Lys tRNA
|

672337 | 672413 | - | 77 | 118602060 | Rmag_R0023 | - | 11 Arg tRNA
|

688967 | 689043 | - | 77 | 118602060 | Rmag_R0024 | - | 03 Pro tRNA
|

708434 | 708510 | - | 77 | 118602060 | Rmag_R0025 | - | 06 Asp tRNA
|

708521 | 708596 | - | 76 | 118602060 | Rmag_R0026 | - | 13 Val tRNA
|

840670 | 840959 | - | 290 | 118602060 | Rmag_R0027 | - | RNA component of RNaseP |

873976 | 874051 | - | 76 | 118602060 | Rmag_R0028 | - | 20 Trp tRNA
|

875358 | 875433 | - | 76 | 118602060 | Rmag_R0029 | - | 12 Thr tRNA
|

875449 | 875522 | - | 74 | 118602060 | Rmag_R0030 | - | 01 Gly tRNA
|

875540 | 875624 | - | 85 | 118602060 | Rmag_R0031 | - | 18 Tyr tRNA
|

893674 | 893765 | + | 92 | 118602060 | Rmag_R0032 | - | 08 Ser tRNA
|

909057 | 909141 | - | 85 | 118602060 | Rmag_R0033 | - | 15 Leu tRNA
|

989716 | 989802 | + | 87 | 118602060 | Rmag_R0034 | - | 15 Leu tRNA
|

1058349 | 1058438 | + | 90 | 118602060 | Rmag_R0035 | - | 08 Ser tRNA
|

1077264 | 1077379 | - | 116 | 118602060 | Rmag_R0036 | - | 5S ribosomal RNA |

1077544 | 1080173 | - | 2630 | 118602060 | Rmag_R0037 | - | 23S ribosomal RNA |

1080775 | 1080850 | - | 76 | 118602060 | Rmag_R0038 | - | 02 Ala tRNA
|

1080975 | 1081051 | - | 77 | 118602060 | Rmag_R0039 | - | 14 Ile tRNA
|

1081270 | 1082807 | - | 1538 | 118602060 | Rmag_R0040 | - | 16S ribosomal RNA |

1159047 | 1159132 | - | 86 | 118602060 | Rmag_R0041 | - | 15 Leu tRNA
|