Материалы:NC 008786

LOCUS NC_008786 5566749 bp DNA circular BCT 11-JAN-2007 DEFINITION Verminephrobacter eiseniae EF01-2, complete genome. ACCESSION NC_008786 VERSION NC_008786.1 GI:121607004 KEYWORDS . SOURCE Verminephrobacter eiseniae EF01-2 ORGANISM Verminephrobacter eiseniae EF01-2 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter. REFERENCE 1 (bases 1 to 5566749) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromosome1 of Verminephrobacter eiseniae EF01-2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5566749) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (10-JAN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5566749) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000542. URL -- http://www.jgi.doe.gov JGI Project ID: 4001428 Source DNA and bacteria available from David Stahl (dastahl@u.washington.edu) Contacts: David Stahl (dastahl@u.washington.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

528385 | 528461 | - | 77 | 121607004 | Veis_R0001 | - | 16 Met tRNA
|

578922 | 579022 | + | 101 | 121607004 | Veis_R0002 | - | SRP RNA |

738694 | 738785 | + | 92 | 121607004 | Veis_R0003 | - | 15 Leu tRNA
|

1025203 | 1025315 | - | 113 | 121607004 | Veis_R0004 | - | 5S ribosomal RNA |

1025434 | 1028318 | - | 2885 | 121607004 | Veis_R0005 | - | 23S ribosomal RNA |

1028601 | 1028676 | - | 76 | 121607004 | Veis_R0006 | - | 02 Ala tRNA
|

1028713 | 1028789 | - | 77 | 121607004 | Veis_R0007 | - | 14 Ile tRNA
|

1028876 | 1030402 | - | 1527 | 121607004 | Veis_R0008 | - | 16S ribosomal RNA |

1065733 | 1065809 | - | 77 | 121607004 | Veis_R0009 | - | 05 Gln tRNA
|

1127458 | 1127533 | + | 76 | 121607004 | Veis_R0010 | - | 10 Lys tRNA
|

1139359 | 1139443 | - | 85 | 121607004 | Veis_R0011 | - | 15 Leu tRNA
|

1169986 | 1170062 | - | 77 | 121607004 | Veis_R0012 | - | 16 Met tRNA
|

1580034 | 1580118 | - | 85 | 121607004 | Veis_R0013 | - | 15 Leu tRNA
|

1760583 | 1760658 | - | 76 | 121607004 | Veis_R0014 | - | 10 Lys tRNA
|

1920799 | 1920888 | - | 90 | 121607004 | Veis_R0015 | - | 08 Ser tRNA
|

1980681 | 1982207 | + | 1527 | 121607004 | Veis_R0016 | - | 16S ribosomal RNA |

1982294 | 1982370 | + | 77 | 121607004 | Veis_R0017 | - | 14 Ile tRNA
|

1982407 | 1982482 | + | 76 | 121607004 | Veis_R0018 | - | 02 Ala tRNA
|

1982765 | 1985649 | + | 2885 | 121607004 | Veis_R0019 | - | 23S ribosomal RNA |

1985768 | 1985880 | + | 113 | 121607004 | Veis_R0020 | - | 5S ribosomal RNA |

2015009 | 2015085 | - | 77 | 121607004 | Veis_R0021 | - | 03 Pro tRNA
|

2076006 | 2076082 | - | 77 | 121607004 | Veis_R0022 | - | 11 Arg tRNA
|

2120629 | 2120895 | - | 267 | 121607004 | Veis_R0023 | - | RNase P |

2557341 | 2557416 | + | 76 | 121607004 | Veis_R0024 | - | 11 Arg tRNA
|

2557498 | 2557583 | + | 86 | 121607004 | Veis_R0025 | - | 18 Tyr tRNA
|

2557626 | 2557699 | + | 74 | 121607004 | Veis_R0026 | - | 01 Gly tRNA
|

2557778 | 2557852 | + | 75 | 121607004 | Veis_R0027 | - | 12 Thr tRNA
|

2559134 | 2559209 | + | 76 | 121607004 | Veis_R0028 | - | 20 Trp tRNA
|

2609490 | 2609566 | - | 77 | 121607004 | Veis_R0029 | - | 16 Met tRNA
|

2691773 | 2691847 | + | 75 | 121607004 | Veis_R0030 | - | 13 Val tRNA
|

3038919 | 3038994 | - | 76 | 121607004 | Veis_R0031 | - | 09 His tRNA
|

3041148 | 3041223 | - | 76 | 121607004 | Veis_R0032 | - | 13 Val tRNA
|

3162439 | 3162523 | - | 85 | 121607004 | Veis_R0033 | - | 15 Leu tRNA
|

3232613 | 3232689 | + | 77 | 121607004 | Veis_R0034 | - | 11 Arg tRNA
|

3398621 | 3398694 | - | 74 | 121607004 | Veis_R0035 | - | 01 Gly tRNA
|

3447533 | 3447609 | + | 77 | 121607004 | Veis_R0036 | - | 03 Pro tRNA
|

3461616 | 3461999 | - | 384 | 121607004 | Veis_R0037 | - | tmRNA |

3516298 | 3516410 | - | 113 | 121607004 | Veis_R0038 | - | 5S ribosomal RNA |

3516529 | 3519413 | - | 2885 | 121607004 | Veis_R0039 | - | 23S ribosomal RNA |

3519696 | 3519771 | - | 76 | 121607004 | Veis_R0040 | - | 02 Ala tRNA
|

3519808 | 3519884 | - | 77 | 121607004 | Veis_R0041 | - | 14 Ile tRNA
|

3519971 | 3521497 | - | 1527 | 121607004 | Veis_R0042 | - | 16S ribosomal RNA |

3550399 | 3550474 | + | 76 | 121607004 | Veis_R0043 | - | 12 Thr tRNA
|

3741704 | 3741780 | - | 77 | 121607004 | Veis_R0044 | - | 06 Asp tRNA
|

3741833 | 3741908 | - | 76 | 121607004 | Veis_R0045 | - | 04 Glu tRNA
|

3741960 | 3742035 | - | 76 | 121607004 | Veis_R0046 | - | 02 Ala tRNA
|

3873822 | 3873911 | + | 90 | 121607004 | Veis_R0047 | - | 08 Ser tRNA
|

3997033 | 3997108 | + | 76 | 121607004 | Veis_R0048 | - | 07 Asn tRNA
|

4006953 | 4007028 | + | 76 | 121607004 | Veis_R0049 | - | 07 Asn tRNA
|

4038941 | 4039030 | + | 90 | 121607004 | Veis_R0050 | - | 08 Ser tRNA
|

4306301 | 4306377 | + | 77 | 121607004 | Veis_R0052 | - | 03 Pro tRNA
|

4319281 | 4319356 | - | 76 | 121607004 | Veis_R0053 | - | 12 Thr tRNA
|

4815696 | 4815772 | + | 77 | 121607004 | Veis_R0054 | - | 13 Val tRNA
|

4818443 | 4818529 | + | 87 | 121607004 | Veis_R0055 | - | 15 Leu tRNA
|

4824630 | 4824705 | + | 76 | 121607004 | Veis_R0056 | - | 01 Gly tRNA
|

4824765 | 4824835 | + | 71 | 121607004 | Veis_R0057 | - | 19 Cys tRNA
|

5037284 | 5037358 | + | 75 | 121607004 | Veis_R0058 | - | 11 Arg tRNA
|

5205301 | 5205376 | - | 76 | 121607004 | Veis_R0059 | - | 17 Phe tRNA
|

5461155 | 5461247 | + | 93 | 121607004 | Veis_R0060 | - | 08 Ser tRNA
|