Материалы:NC 008700

LOCUS NC_008700 4306142 bp DNA circular BCT 21-DEC-2006 DEFINITION Shewanella amazonensis SB2B, complete genome. ACCESSION NC_008700 VERSION NC_008700.1 GI:119773142 KEYWORDS . SOURCE Shewanella amazonensis SB2B ORGANISM Shewanella amazonensis SB2B Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella. REFERENCE 1 (bases 1 to 4306142) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Fredrickson,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Shewanella amazonensis SB2B JOURNAL Unpublished REFERENCE 2 (bases 1 to 4306142) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (21-DEC-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4306142) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Fredrickson,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000507. URL -- http://www.jgi.doe.gov JGI Project ID: 3634604 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Jim Fredrickson (Jim.fredrickson@pnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

56157 | 57693 | + | 1537 | 119773142 | Sama_R0001 | - | 16S ribosomal RNA |

57960 | 60873 | + | 2914 | 119773142 | Sama_R0002 | - | 23S ribosomal RNA |

61045 | 61160 | + | 116 | 119773142 | Sama_R0003 | - | 5S ribosomal RNA |

224354 | 225890 | + | 1537 | 119773142 | Sama_R0004 | - | 16S ribosomal RNA |

225961 | 226037 | + | 77 | 119773142 | Sama_R0005 | - | 14 Ile tRNA
|

226157 | 226232 | + | 76 | 119773142 | Sama_R0006 | - | 02 Ala tRNA
|

226509 | 229422 | + | 2914 | 119773142 | Sama_R0007 | - | 23S ribosomal RNA |

229488 | 229563 | + | 76 | 119773142 | Sama_R0008 | - | 13 Val tRNA
|

229630 | 229745 | + | 116 | 119773142 | Sama_R0009 | - | 5S ribosomal RNA |

233136 | 233211 | + | 76 | 119773142 | Sama_R0010 | - | 12 Thr tRNA
|

233219 | 233303 | + | 85 | 119773142 | Sama_R0011 | - | 18 Tyr tRNA
|

233339 | 233412 | + | 74 | 119773142 | Sama_R0012 | - | 01 Gly tRNA
|

233426 | 233501 | + | 76 | 119773142 | Sama_R0013 | - | 12 Thr tRNA
|

275883 | 277419 | + | 1537 | 119773142 | Sama_R0014 | - | 16S ribosomal RNA |

277686 | 280599 | + | 2914 | 119773142 | Sama_R0015 | - | 23S ribosomal RNA |

280666 | 280741 | + | 76 | 119773142 | Sama_R0016 | - | 13 Val tRNA
|

280810 | 280925 | + | 116 | 119773142 | Sama_R0017 | - | 5S ribosomal RNA |

280949 | 281025 | + | 77 | 119773142 | Sama_R0018 | - | 06 Asp tRNA
|

282826 | 284362 | + | 1537 | 119773142 | Sama_R0019 | - | 16S ribosomal RNA |

284629 | 287542 | + | 2914 | 119773142 | Sama_R0020 | - | 23S ribosomal RNA |

287714 | 287829 | + | 116 | 119773142 | Sama_R0021 | - | 5S ribosomal RNA |

436076 | 437612 | + | 1537 | 119773142 | Sama_R0022 | - | 16S ribosomal RNA |

437683 | 437759 | + | 77 | 119773142 | Sama_R0023 | - | 14 Ile tRNA
|

437879 | 437954 | + | 76 | 119773142 | Sama_R0024 | - | 02 Ala tRNA
|

438231 | 441144 | + | 2914 | 119773142 | Sama_R0025 | - | 23S ribosomal RNA |

441211 | 441286 | + | 76 | 119773142 | Sama_R0026 | - | 13 Val tRNA
|

441353 | 441468 | + | 116 | 119773142 | Sama_R0027 | - | 5S ribosomal RNA |

441514 | 441589 | + | 76 | 119773142 | Sama_R0028 | - | 12 Thr tRNA
|

441632 | 441746 | + | 115 | 119773142 | Sama_R0029 | - | 5S ribosomal RNA |

680733 | 680819 | + | 87 | 119773142 | Sama_R0031 | - | 15 Leu tRNA
|

1006573 | 1006649 | - | 77 | 119773142 | Sama_R0032 | - | 16 Met tRNA
|

1149697 | 1149772 | - | 76 | 119773142 | Sama_R0033 | - | 12 Thr tRNA
|

1149781 | 1149856 | - | 76 | 119773142 | Sama_R0034 | - | 17 Phe tRNA
|

1158691 | 1158777 | + | 87 | 119773142 | Sama_R0035 | - | 15 Leu tRNA
|

1158857 | 1158933 | + | 77 | 119773142 | Sama_R0036 | - | 16 Met tRNA
|

1165215 | 1165328 | + | 114 | 119773142 | Sama_R0037 | - | ribosomal S15 leader |

1271639 | 1271730 | + | 92 | 119773142 | Sama_R0038 | - | 08 Ser tRNA
|

1271754 | 1271830 | + | 77 | 119773142 | Sama_R0039 | - | 11 Arg tRNA
|

1271866 | 1271942 | + | 77 | 119773142 | Sama_R0040 | - | 11 Arg tRNA
|

1271975 | 1272051 | + | 77 | 119773142 | Sama_R0041 | - | 11 Arg tRNA
|

1272091 | 1272167 | + | 77 | 119773142 | Sama_R0042 | - | 11 Arg tRNA
|

1272197 | 1272273 | + | 77 | 119773142 | Sama_R0043 | - | 11 Arg tRNA
|

1272281 | 1272372 | + | 92 | 119773142 | Sama_R0044 | - | 08 Ser tRNA
|

1272419 | 1272495 | + | 77 | 119773142 | Sama_R0045 | - | 11 Arg tRNA
|

1504419 | 1504495 | + | 77 | 119773142 | Sama_R0046 | - | 03 Pro tRNA
|

1504560 | 1504636 | + | 77 | 119773142 | Sama_R0047 | - | 11 Arg tRNA
|

1504649 | 1504724 | + | 76 | 119773142 | Sama_R0048 | - | 09 His tRNA
|

1528004 | 1528118 | + | 115 | 119773142 | Sama_R0049 | - | SRP RNA; RNA component of signal recognition particle |

1867547 | 1869083 | + | 1537 | 119773142 | Sama_R0050 | - | 16S ribosomal RNA |

1869154 | 1869230 | + | 77 | 119773142 | Sama_R0051 | - | 14 Ile tRNA
|

1869351 | 1869426 | + | 76 | 119773142 | Sama_R0052 | - | 02 Ala tRNA
|

1869703 | 1872616 | + | 2914 | 119773142 | Sama_R0053 | - | 23S ribosomal RNA |

1872787 | 1872902 | + | 116 | 119773142 | Sama_R0054 | - | 5S ribosomal RNA |

1894753 | 1894829 | - | 77 | 119773142 | Sama_R0055 | - | 03 Pro tRNA
|

1954117 | 1954193 | - | 77 | 119773142 | Sama_R0056 | - | 16 Met tRNA
|

1954236 | 1954312 | - | 77 | 119773142 | Sama_R0057 | - | 16 Met tRNA
|

1954355 | 1954431 | - | 77 | 119773142 | Sama_R0058 | - | 16 Met tRNA
|

1963948 | 1964038 | + | 91 | 119773142 | Sama_R0059 | - | 08 Ser tRNA
|

1964400 | 1964490 | + | 91 | 119773142 | Sama_R0060 | - | 08 Ser tRNA
|

1968083 | 1968158 | + | 76 | 119773142 | Sama_R0061 | - | 01 Gly tRNA
|

1968189 | 1968262 | + | 74 | 119773142 | Sama_R0062 | - | 19 Cys tRNA
|

1968301 | 1968387 | + | 87 | 119773142 | Sama_R0063 | - | 15 Leu tRNA
|

2096231 | 2096318 | + | 88 | 119773142 | Sama_R0064 | - | 08 Ser tRNA
|

2138789 | 2138865 | - | 77 | 119773142 | Sama_R0065 | - | 03 Pro tRNA
|

2156072 | 2156148 | - | 77 | 119773142 | Sama_R0066 | - | 13 Val tRNA
|

2156188 | 2156264 | - | 77 | 119773142 | Sama_R0067 | - | 13 Val tRNA
|

2197974 | 2198047 | - | 74 | 119773142 | Sama_R0068 | - | 19 Cys tRNA
|

2198068 | 2198143 | - | 76 | 119773142 | Sama_R0069 | - | 01 Gly tRNA
|

2220380 | 2220464 | + | 85 | 119773142 | Sama_R0070 | - | 18 Tyr tRNA
|

2220502 | 2220586 | + | 85 | 119773142 | Sama_R0071 | - | 18 Tyr tRNA
|

2220614 | 2220698 | + | 85 | 119773142 | Sama_R0072 | - | 18 Tyr tRNA
|

2227039 | 2227114 | + | 76 | 119773142 | Sama_R0073 | - | 07 Asn tRNA
|

2227163 | 2227238 | + | 76 | 119773142 | Sama_R0074 | - | 07 Asn tRNA
|

2227262 | 2227337 | + | 76 | 119773142 | Sama_R0075 | - | 07 Asn tRNA
|

2227361 | 2227436 | + | 76 | 119773142 | Sama_R0076 | - | 07 Asn tRNA
|

2227460 | 2227535 | + | 76 | 119773142 | Sama_R0077 | - | 07 Asn tRNA
|

2294530 | 2294606 | - | 77 | 119773142 | Sama_R0078 | - | 06 Asp tRNA
|

2527293 | 2527368 | - | 76 | 119773142 | Sama_R0079 | - | 10 Lys tRNA
|

2527410 | 2527485 | - | 76 | 119773142 | Sama_R0080 | - | 10 Lys tRNA
|

2527525 | 2527600 | - | 76 | 119773142 | Sama_R0081 | - | 10 Lys tRNA
|

2527635 | 2527710 | - | 76 | 119773142 | Sama_R0082 | - | 10 Lys tRNA
|

2527750 | 2527825 | - | 76 | 119773142 | Sama_R0083 | - | 10 Lys tRNA
|

2527853 | 2527928 | - | 76 | 119773142 | Sama_R0084 | - | 10 Lys tRNA
|

2527965 | 2528040 | - | 76 | 119773142 | Sama_R0085 | - | 10 Lys tRNA
|

2528064 | 2528139 | - | 76 | 119773142 | Sama_R0086 | - | 10 Lys tRNA
|

2666313 | 2666388 | - | 76 | 119773142 | Sama_R0087 | - | 02 Ala tRNA
|

2666426 | 2666501 | - | 76 | 119773142 | Sama_R0088 | - | 04 Glu tRNA
|

2666536 | 2666611 | - | 76 | 119773142 | Sama_R0089 | - | 02 Ala tRNA
|

2666649 | 2666724 | - | 76 | 119773142 | Sama_R0090 | - | 04 Glu tRNA
|

2666759 | 2666834 | - | 76 | 119773142 | Sama_R0091 | - | 02 Ala tRNA
|

2666949 | 2667024 | - | 76 | 119773142 | Sama_R0092 | - | 04 Glu tRNA
|

2667059 | 2667134 | - | 76 | 119773142 | Sama_R0093 | - | 02 Ala tRNA
|

2667172 | 2667247 | - | 76 | 119773142 | Sama_R0094 | - | 04 Glu tRNA
|

2667284 | 2667359 | - | 76 | 119773142 | Sama_R0095 | - | 04 Glu tRNA
|

2667523 | 2667598 | - | 76 | 119773142 | Sama_R0096 | - | 04 Glu tRNA
|

2667635 | 2667710 | - | 76 | 119773142 | Sama_R0097 | - | 04 Glu tRNA
|

2667727 | 2667802 | - | 76 | 119773142 | Sama_R0098 | - | 02 Ala tRNA
|

2790511 | 2790586 | + | 76 | 119773142 | Sama_R0099 | - | 11 Arg tRNA
|

2868249 | 2868601 | + | 353 | 119773142 | Sama_R0100 | - | tmRNA |

3077424 | 3077498 | - | 75 | 119773142 | Sama_R0101 | - | 05 Gln tRNA
|

3077543 | 3077619 | - | 77 | 119773142 | Sama_R0102 | - | 16 Met tRNA
|

3077621 | 3077695 | - | 75 | 119773142 | Sama_R0103 | - | 05 Gln tRNA
|

3077718 | 3077792 | - | 75 | 119773142 | Sama_R0104 | - | 05 Gln tRNA
|

3077832 | 3077916 | - | 85 | 119773142 | Sama_R0105 | - | 15 Leu tRNA
|

3077946 | 3078022 | - | 77 | 119773142 | Sama_R0106 | - | 16 Met tRNA
|

3104987 | 3105063 | - | 77 | 119773142 | Sama_R0107 | - | 20 Trp tRNA
|

3107019 | 3107095 | - | 77 | 119773142 | Sama_R0108 | - | 06 Asp tRNA
|

3107119 | 3107234 | - | 116 | 119773142 | Sama_R0109 | - | 5S ribosomal RNA |

3107352 | 3107427 | - | 76 | 119773142 | Sama_R0110 | - | 13 Val tRNA
|

3107493 | 3110406 | - | 2914 | 119773142 | Sama_R0111 | - | 23S ribosomal RNA |

3110673 | 3112209 | - | 1537 | 119773142 | Sama_R0112 | - | 16S ribosomal RNA |

3120564 | 3120639 | + | 76 | 119773142 | Sama_R0113 | - | 17 Phe tRNA
|

3120692 | 3120778 | + | 87 | 119773142 | Sama_R0114 | - | 15 Leu tRNA
|

3120816 | 3120902 | + | 87 | 119773142 | Sama_R0115 | - | 15 Leu tRNA
|

3120933 | 3121019 | + | 87 | 119773142 | Sama_R0116 | - | 15 Leu tRNA
|

3607448 | 3607523 | - | 76 | 119773142 | Sama_R0118 | - | 01 Gly tRNA
|

3607557 | 3607632 | - | 76 | 119773142 | Sama_R0119 | - | 01 Gly tRNA
|

3607666 | 3607741 | - | 76 | 119773142 | Sama_R0120 | - | 01 Gly tRNA
|

3607775 | 3607850 | - | 76 | 119773142 | Sama_R0121 | - | 01 Gly tRNA
|

3607884 | 3607959 | - | 76 | 119773142 | Sama_R0122 | - | 01 Gly tRNA
|

3874396 | 3874472 | - | 77 | 119773142 | Sama_R0123 | - | 03 Pro tRNA
|

3874550 | 3874626 | - | 77 | 119773142 | Sama_R0124 | - | 03 Pro tRNA
|

3874650 | 3874725 | - | 76 | 119773142 | Sama_R0125 | - | 09 His tRNA
|

3874761 | 3874837 | - | 77 | 119773142 | Sama_R0126 | - | 11 Arg tRNA
|

3980859 | 3981162 | - | 304 | 119773142 | Sama_R0127 | - | RNA component of RNaseP |

4109629 | 4109702 | - | 74 | 119773142 | Sama_R0128 | - | 01 Gly tRNA
|

4277026 | 4277102 | - | 77 | 119773142 | Sama_R0129 | - | 06 Asp tRNA
|

4277126 | 4277241 | - | 116 | 119773142 | Sama_R0130 | - | 5S ribosomal RNA |

4277413 | 4280326 | - | 2914 | 119773142 | Sama_R0131 | - | 23S ribosomal RNA |

4280593 | 4282129 | - | 1537 | 119773142 | Sama_R0132 | - | 16S ribosomal RNA |