Материалы:NC 008752

LOCUS NC_008752 5352772 bp DNA circular BCT 05-JAN-2007 DEFINITION Acidovorax avenae subsp. citrulli AAC00-1, complete genome. ACCESSION NC_008752 VERSION NC_008752.1 GI:120608714 KEYWORDS . SOURCE Acidovorax avenae subsp. citrulli AAC00-1 ORGANISM Acidovorax avenae subsp. citrulli AAC00-1 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax. REFERENCE 1 (bases 1 to 5352772) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Acidovorax avenae subsp. citrulli AAC00-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5352772) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-JAN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5352772) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000512. URL -- http://www.jgi.doe.gov JGI Project ID: 4001427 Source DNA and bacteria available from David Stahl (dastahl@u.washington.edu) Contacts: David Stahl (dastahl@u.washington.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

421004 | 421079 | + | 76 | 120608714 | Aave_R0001 | - | 11 Arg tRNA
|

678492 | 678568 | + | 77 | 120608714 | Aave_R0002 | - | 16 Met tRNA
|

850157 | 850431 | + | 275 | 120608714 | Aave_R0003 | - | RNase P |

953378 | 953454 | + | 77 | 120608714 | Aave_R0004 | - | 16 Met tRNA
|

1387775 | 1387859 | + | 85 | 120608714 | Aave_R0005 | - | 15 Leu tRNA
|

1577962 | 1579483 | + | 1522 | 120608714 | Aave_R0006 | - | 16S ribosomal RNA |

1579555 | 1579631 | + | 77 | 120608714 | Aave_R0007 | - | 14 Ile tRNA
|

1579663 | 1579738 | + | 76 | 120608714 | Aave_R0008 | - | 02 Ala tRNA
|

1580100 | 1582980 | + | 2881 | 120608714 | Aave_R0009 | - | 23S ribosomal RNA |

1583093 | 1583205 | + | 113 | 120608714 | Aave_R0010 | - | 5S ribosomal RNA |

1604244 | 1604319 | - | 76 | 120608714 | Aave_R0011 | - | 01 Gly tRNA
|

1604432 | 1604505 | - | 74 | 120608714 | Aave_R0012 | - | 19 Cys tRNA
|

1604561 | 1604636 | - | 76 | 120608714 | Aave_R0013 | - | 01 Gly tRNA
|

1610765 | 1610851 | - | 87 | 120608714 | Aave_R0014 | - | 15 Leu tRNA
|

1643270 | 1643361 | + | 92 | 120608714 | Aave_R0015 | - | 15 Leu tRNA
|

1756051 | 1756127 | + | 77 | 120608714 | Aave_R0016 | - | 13 Val tRNA
|

1828502 | 1828577 | + | 76 | 120608714 | Aave_R0017 | - | 13 Val tRNA
|

1897374 | 1897449 | + | 76 | 120608714 | Aave_R0018 | - | 09 His tRNA
|

1920321 | 1920397 | + | 77 | 120608714 | Aave_R0019 | - | 16 Met tRNA
|

1945301 | 1945377 | - | 77 | 120608714 | Aave_R0020 | - | 11 Arg tRNA
|

1997788 | 1997863 | - | 76 | 120608714 | Aave_R0021 | - | 12 Thr tRNA
|

2021784 | 2021859 | + | 76 | 120608714 | Aave_R0022 | - | 02 Ala tRNA
|

2021892 | 2021967 | + | 76 | 120608714 | Aave_R0023 | - | 04 Glu tRNA
|

2022020 | 2022096 | + | 77 | 120608714 | Aave_R0024 | - | 06 Asp tRNA
|

2022170 | 2022245 | + | 76 | 120608714 | Aave_R0025 | - | 02 Ala tRNA
|

2022279 | 2022354 | + | 76 | 120608714 | Aave_R0026 | - | 04 Glu tRNA
|

2022406 | 2022482 | + | 77 | 120608714 | Aave_R0027 | - | 06 Asp tRNA
|

2068771 | 2068846 | - | 76 | 120608714 | Aave_R0028 | - | 10 Lys tRNA
|

2156283 | 2156367 | - | 85 | 120608714 | Aave_R0029 | - | 15 Leu tRNA
|

2554319 | 2554411 | + | 93 | 120608714 | Aave_R0030 | - | 08 Ser tRNA
|

2673714 | 2673788 | + | 75 | 120608714 | Aave_R0031 | - | 13 Val tRNA
|

2673833 | 2673907 | + | 75 | 120608714 | Aave_R0032 | - | 13 Val tRNA
|

2770121 | 2770194 | - | 74 | 120608714 | Aave_R0033 | - | 01 Gly tRNA
|

2904776 | 2904876 | - | 101 | 120608714 | Aave_R0034 | - | SRP RNA; RNA component of signal recognition particle |

3143442 | 3143518 | - | 77 | 120608714 | Aave_R0035 | - | 03 Pro tRNA
|

3243131 | 3243207 | - | 77 | 120608714 | Aave_R0036 | - | 03 Pro tRNA
|

3289237 | 3289321 | + | 85 | 120608714 | Aave_R0037 | - | 15 Leu tRNA
|

3289523 | 3289607 | + | 85 | 120608714 | Aave_R0038 | - | 15 Leu tRNA
|

3427982 | 3428057 | + | 76 | 120608714 | Aave_R0039 | - | 07 Asn tRNA
|

3428117 | 3428192 | + | 76 | 120608714 | Aave_R0040 | - | 07 Asn tRNA
|

3604592 | 3604681 | + | 90 | 120608714 | Aave_R0041 | - | 08 Ser tRNA
|

3621588 | 3621963 | - | 376 | 120608714 | Aave_R0042 | - | |

3759486 | 3759561 | - | 76 | 120608714 | Aave_R0043 | - | 10 Lys tRNA
|

3907100 | 3907187 | + | 88 | 120608714 | Aave_R0044 | - | 08 Ser tRNA
|

3958339 | 3958415 | - | 77 | 120608714 | Aave_R0045 | - | 11 Arg tRNA
|

3983496 | 3983572 | + | 77 | 120608714 | Aave_R0046 | - | 05 Gln tRNA
|

4053448 | 4053524 | + | 77 | 120608714 | Aave_R0047 | - | 03 Pro tRNA
|

4069768 | 4069843 | - | 76 | 120608714 | Aave_R0048 | - | 12 Thr tRNA
|

4186414 | 4186503 | - | 90 | 120608714 | Aave_R0049 | - | 08 Ser tRNA
|

4387507 | 4387581 | + | 75 | 120608714 | Aave_R0050 | - | 11 Arg tRNA
|

4859361 | 4859473 | - | 113 | 120608714 | Aave_R0051 | - | 5S ribosomal RNA |

4859586 | 4862466 | - | 2881 | 120608714 | Aave_R0052 | - | 23S ribosomal RNA |

4862828 | 4862903 | - | 76 | 120608714 | Aave_R0053 | - | 02 Ala tRNA
|

4862935 | 4863011 | - | 77 | 120608714 | Aave_R0054 | - | 14 Ile tRNA
|

4863083 | 4864604 | - | 1522 | 120608714 | Aave_R0055 | - | 16S ribosomal RNA |

5027995 | 5028070 | - | 76 | 120608714 | Aave_R0056 | - | 17 Phe tRNA
|

5046274 | 5046349 | - | 76 | 120608714 | Aave_R0057 | - | 20 Trp tRNA
|

5047623 | 5047697 | - | 75 | 120608714 | Aave_R0058 | - | 12 Thr tRNA
|

5047733 | 5047806 | - | 74 | 120608714 | Aave_R0059 | - | 01 Gly tRNA
|

5047849 | 5047934 | - | 86 | 120608714 | Aave_R0060 | - | 18 Tyr tRNA
|

5048074 | 5048186 | - | 113 | 120608714 | Aave_R0061 | - | 5S ribosomal RNA |

5048299 | 5051179 | - | 2881 | 120608714 | Aave_R0062 | - | 23S ribosomal RNA |

5051541 | 5051616 | - | 76 | 120608714 | Aave_R0063 | - | 02 Ala tRNA
|

5051648 | 5051724 | - | 77 | 120608714 | Aave_R0064 | - | 14 Ile tRNA
|

5051796 | 5053317 | - | 1522 | 120608714 | Aave_R0065 | - | 16S ribosomal RNA |