Материалы:NC 007481

LOCUS NC_007481 3214944 bp DNA circular BCT 20-JAN-2006 DEFINITION Pseudoalteromonas haloplanktis TAC125 chromosome I, complete sequence. ACCESSION NC_007481 VERSION NC_007481.1 GI:77358982 KEYWORDS . SOURCE Pseudoalteromonas haloplanktis TAC125 ORGANISM Pseudoalteromonas haloplanktis TAC125 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas. REFERENCE 1 (bases 1 to 3214944) AUTHORS Medigue,C., Krin,E., Pascal,G., Barbe,V., Bernsel,A., Bertin,P.N., Cheung,F., Cruveiller,S., D'Amico,S., Duilio,A., Fang,G., Feller,G., Ho,C., Mangenot,S., Marino,G., Nilsson,J., Parrilli,E., Rocha,E.P., Rouy,Z., Sekowska,A., Tutino,M.L., Vallenet,D., von Heijne,G. and Danchin,A. TITLE Coping with cold: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125 JOURNAL (er) Genome Res. 15 (10), 1325-1335 (2005) In press PUBMED 16169927 REMARK 1. Genoscope, CNRS-UMR 8030, Atelier de Genomique Comparative, 2, rue Gaston Cremieux, 91006 Evry Cedex, France 2. Genetics of Bacterial Genomes, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris Cedex 15, France 3. Dept of Biochemistry & Biophysics, Stockholm University, S-106 91 Stockholm, Sweden 4. Dynamique, Evolution et Expression de Genomes de Micro-organismes, Universite Louis Pasteur, 28, rue Goethe, 67000 Strasbourg, France 5. Laboratoire de Biochimie, Institut de Chimie B6, Universite de Liege, B-4000 Liege-Sart Tilman, Belgium 6. Dipartimento di Chimica Organica e Biochimica, edificio MB, via Cinthia, Complesso Universitario Monte S. Angelo, 80126 Napoli, Italy 7. CEA Saclay, Laboratoire Stress Oxydants et Cancer, DSV/DBJC/SBMS, Bat 142, 91191 Gif sur Yvette Cedex, France REFERENCE 2 (bases 1 to 3214944) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-OCT-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3214944) AUTHORS Genoscope. CONSRTM Institut Pasteur and Genoscope TITLE Direct Submission JOURNAL Submitted (26-APR-2005) Genoscope, Centre National de Sequencage, BP 191, Evry cedex 91006, France REMARK This sequence was made in collaboration between the laboratory Institut Pasteur (France) and Genoscope (France). COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CR954246. Annotation data relative to COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in Psychroscope database via MaGe annotation system http://www.genoscope.cns.fr/agc/mage/psychroscope. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS 7 : Gene remnant. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

35140 | 36667 | + | 1528 | 77358982 | PSHAa_rRNA16s6 | - | 16S ribosomal RNA |

36745 | 36821 | + | 77 | 77358982 | PSHAatRNA1 | - | 14 Ile tRNA
|

36933 | 37008 | + | 76 | 77358982 | PSHAatRNA2 | - | 02 Ala tRNA
|

37315 | 40203 | + | 2889 | 77358982 | PSHAa_rRNA23s6 | - | 23s |

40347 | 40463 | + | 117 | 77358982 | PSHAa_rRNA5s7 | - | 5S ribosomal RNA |

59328 | 59420 | - | 93 | 77358982 | PSHAatRNA106 | - | 08 Ser tRNA
|

59478 | 59568 | - | 91 | 77358982 | PSHAatRNA105 | - | 08 Ser tRNA
|

124066 | 125593 | + | 1528 | 77358982 | PSHAa_rRNA16s7 | - | 16s ribsomal RNA |

125895 | 128784 | + | 2890 | 77358982 | PSHAa_rRNA23s7 | - | 23s |

128928 | 129044 | + | 117 | 77358982 | PSHAa_rRNA5s8 | - | 5S ribosomal RNA |

137523 | 137599 | + | 77 | 77358982 | PSHAatRNA3 | - | 16 Met tRNA
|

137795 | 137871 | + | 77 | 77358982 | PSHAatRNA4 | - | 16 Met tRNA
|

138045 | 138121 | + | 77 | 77358982 | PSHAatRNA5 | - | 16 Met tRNA
|

224316 | 224392 | + | 77 | 77358982 | PSHAatRNA6 | - | 20 Trp tRNA
|

265958 | 267485 | + | 1528 | 77358982 | PSHAa_rRNA16s8 | - | 16s ribsomal RNA |

267563 | 267639 | + | 77 | 77358982 | PSHAatRNA7 | - | 14 Ile tRNA
|

267751 | 267826 | + | 76 | 77358982 | PSHAatRNA8 | - | 02 Ala tRNA
|

268133 | 271021 | + | 2889 | 77358982 | PSHAa_rRNA23s8 | - | 23s |

271165 | 271281 | + | 117 | 77358982 | PSHAa_rRNA5s9 | - | 5S ribosomal RNA |

296689 | 296764 | - | 76 | 77358982 | PSHAatRNA104 | - | 02 Ala tRNA
|

342483 | 342559 | + | 77 | 77358982 | PSHAatRNA9 | - | 16 Met tRNA
|

414242 | 414317 | - | 76 | 77358982 | PSHAatRNA103 | - | 09 His tRNA
|

506639 | 506714 | + | 76 | 77358982 | PSHAatRNA10 | - | 01 Gly tRNA
|

506920 | 506995 | + | 76 | 77358982 | PSHAatRNA11 | - | 01 Gly tRNA
|

507112 | 507187 | + | 76 | 77358982 | PSHAatRNA12 | - | 01 Gly tRNA
|

509920 | 511447 | + | 1528 | 77358982 | PSHAa_rRNA16s9 | - | 16S ribosomal RNA |

511749 | 514637 | + | 2889 | 77358982 | PSHAa_rRNA23s9 | - | 23S ribosomal RNA |

514781 | 514897 | + | 117 | 77358982 | PSHAa_rRNA5s10 | - | 5S ribosomal RNA |

534723 | 534815 | + | 93 | 77358982 | PSHAatRNA13 | - | 08 Ser tRNA
|

534851 | 534927 | + | 77 | 77358982 | PSHAatRNA14 | - | 11 Arg tRNA
|

535030 | 535106 | + | 77 | 77358982 | PSHAatRNA15 | - | 11 Arg tRNA
|

535254 | 535330 | + | 77 | 77358982 | PSHAatRNA16 | - | 11 Arg tRNA
|

535445 | 535521 | + | 77 | 77358982 | PSHAatRNA17 | - | 11 Arg tRNA
|

574291 | 574366 | + | 76 | 77358982 | PSHAatRNA18 | - | 17 Phe tRNA
|

574439 | 574514 | + | 76 | 77358982 | PSHAatRNA19 | - | 12 Thr tRNA
|

574659 | 574734 | + | 76 | 77358982 | PSHAatRNA20 | - | 17 Phe tRNA
|

574794 | 574869 | + | 76 | 77358982 | PSHAatRNA21 | - | 12 Thr tRNA
|

575168 | 575243 | + | 76 | 77358982 | PSHAatRNA22 | - | 17 Phe tRNA
|

676584 | 676660 | + | 77 | 77358982 | PSHAatRNA23 | - | 20 Trp tRNA
|

790914 | 790988 | + | 75 | 77358982 | PSHAatRNA24 | - | 11 Arg tRNA
|

901280 | 901364 | + | 85 | 77358982 | PSHAatRNA25 | - | 15 Leu tRNA
|

1030586 | 1030662 | + | 77 | 77358982 | PSHAatRNA26 | - | 16 Met tRNA
|

1087155 | 1087229 | - | 75 | 77358982 | PSHAatRNA102 | - | 05 Gln tRNA
|

1087269 | 1087353 | - | 85 | 77358982 | PSHAatRNA101 | - | 15 Leu tRNA
|

1087424 | 1087498 | - | 75 | 77358982 | PSHAatRNA100 | - | 05 Gln tRNA
|

1087537 | 1087621 | - | 85 | 77358982 | PSHAatRNA99 | - | 15 Leu tRNA
|

1087706 | 1087780 | - | 75 | 77358982 | PSHAatRNA98 | - | 05 Gln tRNA
|

1087819 | 1087903 | - | 85 | 77358982 | PSHAatRNA97 | - | 15 Leu tRNA
|

1087996 | 1088072 | - | 77 | 77358982 | PSHAatRNA96 | - | 16 Met tRNA
|

1088078 | 1088152 | - | 75 | 77358982 | PSHAatRNA95 | - | 05 Gln tRNA
|

1088189 | 1088273 | - | 85 | 77358982 | PSHAatRNA94 | - | 15 Leu tRNA
|

1088339 | 1088415 | - | 77 | 77358982 | PSHAatRNA93 | - | 16 Met tRNA
|

1127656 | 1127731 | - | 76 | 77358982 | PSHAatRNA92 | - | 13 Val tRNA
|

1127788 | 1127863 | - | 76 | 77358982 | PSHAatRNA91 | - | 13 Val tRNA
|

1128013 | 1128088 | - | 76 | 77358982 | PSHAatRNA90 | - | 13 Val tRNA
|

1128247 | 1128322 | - | 76 | 77358982 | PSHAatRNA89 | - | 13 Val tRNA
|

1128474 | 1128549 | - | 76 | 77358982 | PSHAatRNA88 | - | 13 Val tRNA
|

1128706 | 1128781 | - | 76 | 77358982 | PSHAatRNA87 | - | 13 Val tRNA
|

1128932 | 1129007 | - | 76 | 77358982 | PSHAatRNA86 | - | 13 Val tRNA
|

1129743 | 1129818 | + | 76 | 77358982 | PSHAatRNA27 | - | 02 Ala tRNA
|

1129856 | 1129931 | + | 76 | 77358982 | PSHAatRNA28 | - | 04 Glu tRNA
|

1130076 | 1130151 | + | 76 | 77358982 | PSHAatRNA29 | - | 04 Glu tRNA
|

1130326 | 1130401 | + | 76 | 77358982 | PSHAatRNA30 | - | 04 Glu tRNA
|

1130491 | 1130566 | + | 76 | 77358982 | PSHAatRNA31 | - | 04 Glu tRNA
|

1130656 | 1130731 | + | 76 | 77358982 | PSHAatRNA32 | - | 04 Glu tRNA
|

1130821 | 1130896 | + | 76 | 77358982 | PSHAatRNA33 | - | 04 Glu tRNA
|

1131075 | 1131150 | + | 76 | 77358982 | PSHAatRNA34 | - | 04 Glu tRNA
|

1153663 | 1153739 | - | 77 | 77358982 | PSHAatRNA85 | - | 07 Asn tRNA
|

1153765 | 1153841 | - | 77 | 77358982 | PSHAatRNA84 | - | 07 Asn tRNA
|

1153864 | 1153940 | - | 77 | 77358982 | PSHAatRNA83 | - | 07 Asn tRNA
|

1153962 | 1154038 | - | 77 | 77358982 | PSHAatRNA82 | - | 07 Asn tRNA
|

1199960 | 1200044 | - | 85 | 77358982 | PSHAatRNA81 | - | 18 Tyr tRNA
|

1200094 | 1200178 | - | 85 | 77358982 | PSHAatRNA80 | - | 18 Tyr tRNA
|

1484222 | 1484312 | + | 91 | 77358982 | PSHAatRNA35 | - | 08 Ser tRNA
|

1761799 | 1761889 | - | 91 | 77358982 | PSHAatRNA79 | - | 08 Ser tRNA
|

1761991 | 1762081 | - | 91 | 77358982 | PSHAatRNA78 | - | 08 Ser tRNA
|

1817986 | 1818062 | + | 77 | 77358982 | PSHAatRNA36 | - | 13 Val tRNA
|

1818114 | 1818190 | + | 77 | 77358982 | PSHAatRNA37 | - | 13 Val tRNA
|

1968865 | 1968954 | - | 90 | 77358982 | PSHAatRNA77 | - | 08 Ser tRNA
|

1970344 | 1970419 | - | 76 | 77358982 | PSHAatRNA76 | - | 10 Lys tRNA
|

1970504 | 1970579 | - | 76 | 77358982 | PSHAatRNA75 | - | 10 Lys tRNA
|

1970651 | 1970726 | - | 76 | 77358982 | PSHAatRNA74 | - | 10 Lys tRNA
|

1970812 | 1970887 | - | 76 | 77358982 | PSHAatRNA73 | - | 10 Lys tRNA
|

1970957 | 1971032 | - | 76 | 77358982 | PSHAatRNA72 | - | 10 Lys tRNA
|

1971118 | 1971193 | - | 76 | 77358982 | PSHAatRNA71 | - | 10 Lys tRNA
|

1971263 | 1971338 | - | 76 | 77358982 | PSHAatRNA70 | - | 10 Lys tRNA
|

1971417 | 1971492 | - | 76 | 77358982 | PSHAatRNA69 | - | 10 Lys tRNA
|

1983712 | 1983788 | + | 77 | 77358982 | PSHAatRNA38 | - | 03 Pro tRNA
|

2014134 | 2014250 | - | 117 | 77358982 | PSHAa_rRNA5s6 | - | 5S ribosomal RNA |

2014394 | 2017282 | - | 2889 | 77358982 | PSHAa_rRNA23s5 | - | 23S ribosomal RNA |

2017583 | 2019110 | - | 1528 | 77358982 | PSHAa_rRNA16s5 | - | 16S ribosomal RNA |

2021825 | 2021911 | - | 87 | 77358982 | PSHAatRNA68 | - | 15 Leu tRNA
|

2021950 | 2022023 | - | 74 | 77358982 | PSHAatRNA67 | - | 19 Cys tRNA
|

2022043 | 2022118 | - | 76 | 77358982 | PSHAatRNA66 | - | 01 Gly tRNA
|

2022194 | 2022280 | - | 87 | 77358982 | PSHAatRNA65 | - | 15 Leu tRNA
|

2022320 | 2022395 | - | 76 | 77358982 | PSHAatRNA64 | - | 01 Gly tRNA
|

2022460 | 2022546 | - | 87 | 77358982 | PSHAatRNA63 | - | 15 Leu tRNA
|

2022584 | 2022657 | - | 74 | 77358982 | PSHAatRNA62 | - | 19 Cys tRNA
|

2022675 | 2022750 | - | 76 | 77358982 | PSHAatRNA61 | - | 01 Gly tRNA
|

2064272 | 2064348 | - | 77 | 77358982 | PSHAatRNA60 | - | 06 Asp tRNA
|

2064403 | 2064479 | - | 77 | 77358982 | PSHAatRNA59 | - | 06 Asp tRNA
|

2064527 | 2064603 | - | 77 | 77358982 | PSHAatRNA58 | - | 06 Asp tRNA
|

2064642 | 2064718 | - | 77 | 77358982 | PSHAatRNA57 | - | 06 Asp tRNA
|

2064752 | 2064828 | - | 77 | 77358982 | PSHAatRNA56 | - | 06 Asp tRNA
|

2064870 | 2064946 | - | 77 | 77358982 | PSHAatRNA55 | - | 06 Asp tRNA
|

2064973 | 2065049 | - | 77 | 77358982 | PSHAatRNA54 | - | 06 Asp tRNA
|

2065845 | 2065921 | - | 77 | 77358982 | PSHAatRNA53 | - | 06 Asp tRNA
|

2065955 | 2066031 | - | 77 | 77358982 | PSHAatRNA52 | - | 06 Asp tRNA
|

2066073 | 2066149 | - | 77 | 77358982 | PSHAatRNA51 | - | 06 Asp tRNA
|

2066176 | 2066252 | - | 77 | 77358982 | PSHAatRNA50 | - | 06 Asp tRNA
|

2183379 | 2183455 | - | 77 | 77358982 | PSHAatRNA49 | - | 03 Pro tRNA
|

2183520 | 2183596 | - | 77 | 77358982 | PSHAatRNA48 | - | 03 Pro tRNA
|

2183612 | 2183687 | - | 76 | 77358982 | PSHAatRNA47 | - | 09 His tRNA
|

2183711 | 2183787 | - | 77 | 77358982 | PSHAatRNA46 | - | 11 Arg tRNA
|

2183904 | 2183980 | - | 77 | 77358982 | PSHAatRNA45 | - | 03 Pro tRNA
|

2480362 | 2480477 | - | 116 | 77358982 | PSHAa_rRNA5s5 | - | 5S ribosomal RNA |

2480542 | 2480658 | - | 117 | 77358982 | PSHAa_rRNA5s4 | - | 5S ribosomal RNA |

2480802 | 2483690 | - | 2889 | 77358982 | PSHAa_rRNA23s4 | - | 23s |

2483991 | 2485518 | - | 1528 | 77358982 | PSHAa_rRNA16s4 | - | 16S ribosomal RNA |

2569720 | 2569804 | - | 85 | 77358982 | PSHAatRNA44 | - | 15 Leu tRNA
|

2581718 | 2581792 | - | 75 | 77358982 | PSHAatRNA43 | - | 11 Arg tRNA
|

2959882 | 2959998 | - | 117 | 77358982 | PSHAa_rRNA5s3 | - | 5S ribosomal RNA |

2960142 | 2963030 | - | 2889 | 77358982 | PSHAa_rRNA23s3 | - | 23s |

2963333 | 2964860 | - | 1528 | 77358982 | PSHAa_rRNA16s3 | - | 16S ribosomal RNA |

2978832 | 2978948 | - | 117 | 77358982 | PSHAa_rRNA5s2 | - | 5S ribosomal RNA |

2979092 | 2981980 | - | 2889 | 77358982 | PSHAa_rRNA23s2 | - | 23S ribosomal RNA |

2982280 | 2983807 | - | 1528 | 77358982 | PSHAa_rRNA16s2 | - | 16S ribosomal RNA |

3080703 | 3080778 | - | 76 | 77358982 | PSHAatRNA42 | - | 12 Thr tRNA
|

3080791 | 3080865 | - | 75 | 77358982 | PSHAatRNA41 | - | 01 Gly tRNA
|

3080911 | 3080995 | - | 85 | 77358982 | PSHAatRNA40 | - | 18 Tyr tRNA
|

3081037 | 3081112 | - | 76 | 77358982 | PSHAatRNA39 | - | 12 Thr tRNA
|

3189804 | 3189920 | - | 117 | 77358982 | PSHAa_rRNA5s1 | - | 5S ribosomal RNA |

3190064 | 3192952 | - | 2889 | 77358982 | PSHAa_rRNA23s1 | - | 23S ribosomal RNA |

3193253 | 3194780 | - | 1528 | 77358982 | PSHAa_rRNA16s1 | - | 16S ribosomal RNA |