Материалы:NC 009092

LOCUS NC_009092 4602594 bp DNA circular BCT 14-AUG-2007 DEFINITION Shewanella loihica PV-4, complete genome. ACCESSION NC_009092 VERSION NC_009092.1 GI:127510935 KEYWORDS . SOURCE Shewanella loihica PV-4 ORGANISM Shewanella loihica PV-4 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella. REFERENCE 1 (bases 1 to 4602594) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Romine,M.F., Serres,G., Fredrickson,J., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Shewanella loihica PV-4 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4602594) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-MAR-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4602594) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Romine,M.F., Serres,G., Fredrickson,J., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000606. URL -- http://www.jgi.doe.gov JGI Project ID: 3634499 Source DNA and bacteria available from Jim Fredrickson (Jim.fredrickson@pnl.gov) Contacts: Shewanella Federation (shewanella.org) James Tiedje (tiedjej@msu.edu) Jim Fredrickson (Jim.fredrickson@pnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes:There is one region (190008-190149) of the genome that was covered only by reads from the 454 sequencing machine. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

151087 | 152641 | + | 1555 | 127510935 | Shew_R0001 | - | 16S ribosomal RNA |

152699 | 152775 | + | 77 | 127510935 | Shew_R0002 | - | 14 Ile tRNA
|

152828 | 152903 | + | 76 | 127510935 | Shew_R0003 | - | 02 Ala tRNA
|

153149 | 156041 | + | 2893 | 127510935 | Shew_R0004 | - | 23S ribosomal RNA |

156162 | 156282 | + | 121 | 127510935 | Shew_R0005 | - | 5S ribosomal RNA |

160440 | 160515 | + | 76 | 127510935 | Shew_R0006 | - | 12 Thr tRNA
|

160523 | 160607 | + | 85 | 127510935 | Shew_R0007 | - | 18 Tyr tRNA
|

160644 | 160717 | + | 74 | 127510935 | Shew_R0008 | - | 01 Gly tRNA
|

203400 | 204956 | + | 1557 | 127510935 | Shew_R0009 | - | 16S ribosomal RNA |

205195 | 208087 | + | 2893 | 127510935 | Shew_R0010 | - | 23S ribosomal RNA |

208189 | 208309 | + | 121 | 127510935 | Shew_R0011 | - | 5S ribosomal RNA |

208343 | 208419 | + | 77 | 127510935 | Shew_R0012 | - | 06 Asp tRNA
|

242495 | 242800 | + | 306 | 127510935 | Shew_R0013 | - | RNA component of RNaseP |

331983 | 332059 | + | 77 | 127510935 | Shew_R0014 | - | 11 Arg tRNA
|

332103 | 332178 | + | 76 | 127510935 | Shew_R0015 | - | 09 His tRNA
|

332263 | 332339 | + | 77 | 127510935 | Shew_R0016 | - | 03 Pro tRNA
|

332392 | 332468 | + | 77 | 127510935 | Shew_R0017 | - | 03 Pro tRNA
|

413069 | 413159 | + | 91 | 127510935 | Shew_R0018 | - | 08 Ser tRNA
|

633941 | 634016 | + | 76 | 127510935 | Shew_R0019 | - | 01 Gly tRNA
|

634062 | 634137 | + | 76 | 127510935 | Shew_R0020 | - | 01 Gly tRNA
|

634145 | 634220 | + | 76 | 127510935 | Shew_R0021 | - | 01 Gly tRNA
|

634229 | 634304 | + | 76 | 127510935 | Shew_R0022 | - | 01 Gly tRNA
|

1153125 | 1153201 | - | 77 | 127510935 | Shew_R0023 | - | 16 Met tRNA
|

1296009 | 1296084 | - | 76 | 127510935 | Shew_R0024 | - | 12 Thr tRNA
|

1296092 | 1296167 | - | 76 | 127510935 | Shew_R0025 | - | 17 Phe tRNA
|

1416121 | 1416212 | + | 92 | 127510935 | Shew_R0026 | - | 08 Ser tRNA
|

1416234 | 1416310 | + | 77 | 127510935 | Shew_R0027 | - | 11 Arg tRNA
|

1416348 | 1416424 | + | 77 | 127510935 | Shew_R0028 | - | 11 Arg tRNA
|

1416450 | 1416526 | + | 77 | 127510935 | Shew_R0029 | - | 11 Arg tRNA
|

1416580 | 1416656 | + | 77 | 127510935 | Shew_R0030 | - | 11 Arg tRNA
|

1416665 | 1416756 | + | 92 | 127510935 | Shew_R0031 | - | 08 Ser tRNA
|

1466990 | 1467345 | - | 356 | 127510935 | Shew_R0032 | - | tmRNA |

1547952 | 1548027 | - | 76 | 127510935 | Shew_R0033 | - | 11 Arg tRNA
|

1665747 | 1665822 | - | 76 | 127510935 | Shew_R0034 | - | 13 Val tRNA
|

1665861 | 1665936 | - | 76 | 127510935 | Shew_R0035 | - | 13 Val tRNA
|

1665974 | 1666049 | - | 76 | 127510935 | Shew_R0036 | - | 13 Val tRNA
|

1666088 | 1666163 | - | 76 | 127510935 | Shew_R0037 | - | 13 Val tRNA
|

1666223 | 1666298 | - | 76 | 127510935 | Shew_R0038 | - | 13 Val tRNA
|

1666333 | 1666408 | - | 76 | 127510935 | Shew_R0039 | - | 13 Val tRNA
|

1668903 | 1668978 | + | 76 | 127510935 | Shew_R0040 | - | 02 Ala tRNA
|

1669059 | 1669134 | + | 76 | 127510935 | Shew_R0041 | - | 04 Glu tRNA
|

1669242 | 1669317 | + | 76 | 127510935 | Shew_R0042 | - | 04 Glu tRNA
|

1669425 | 1669500 | + | 76 | 127510935 | Shew_R0043 | - | 04 Glu tRNA
|

1669608 | 1669683 | + | 76 | 127510935 | Shew_R0044 | - | 04 Glu tRNA
|

1669791 | 1669866 | + | 76 | 127510935 | Shew_R0045 | - | 04 Glu tRNA
|

1669974 | 1670049 | + | 76 | 127510935 | Shew_R0046 | - | 04 Glu tRNA
|

1670171 | 1670246 | + | 76 | 127510935 | Shew_R0047 | - | 04 Glu tRNA
|

1670321 | 1670396 | + | 76 | 127510935 | Shew_R0048 | - | 02 Ala tRNA
|

1695147 | 1695223 | - | 77 | 127510935 | Shew_R0049 | - | 03 Pro tRNA
|

1752885 | 1752960 | + | 76 | 127510935 | Shew_R0050 | - | 10 Lys tRNA
|

1752999 | 1753074 | + | 76 | 127510935 | Shew_R0051 | - | 10 Lys tRNA
|

1753113 | 1753188 | + | 76 | 127510935 | Shew_R0052 | - | 10 Lys tRNA
|

1753363 | 1753438 | + | 76 | 127510935 | Shew_R0053 | - | 10 Lys tRNA
|

1753613 | 1753688 | + | 76 | 127510935 | Shew_R0054 | - | 10 Lys tRNA
|

1753864 | 1753939 | + | 76 | 127510935 | Shew_R0055 | - | 10 Lys tRNA
|

1753979 | 1754054 | + | 76 | 127510935 | Shew_R0056 | - | 10 Lys tRNA
|

2082317 | 2082393 | - | 77 | 127510935 | Shew_R0057 | - | 16 Met tRNA
|

2082440 | 2082516 | - | 77 | 127510935 | Shew_R0058 | - | 16 Met tRNA
|

2082564 | 2082640 | - | 77 | 127510935 | Shew_R0059 | - | 16 Met tRNA
|

2082688 | 2082764 | - | 77 | 127510935 | Shew_R0060 | - | 16 Met tRNA
|

2102518 | 2102593 | + | 76 | 127510935 | Shew_R0061 | - | 01 Gly tRNA
|

2102606 | 2102679 | + | 74 | 127510935 | Shew_R0062 | - | 19 Cys tRNA
|

2102719 | 2102805 | + | 87 | 127510935 | Shew_R0063 | - | 15 Leu tRNA
|

2229890 | 2229977 | + | 88 | 127510935 | Shew_R0064 | - | 08 Ser tRNA
|

2311927 | 2312013 | - | 87 | 127510935 | Shew_R0065 | - | 15 Leu tRNA
|

2312052 | 2312125 | - | 74 | 127510935 | Shew_R0066 | - | 19 Cys tRNA
|

2312161 | 2312236 | - | 76 | 127510935 | Shew_R0067 | - | 01 Gly tRNA
|

2327622 | 2327712 | - | 91 | 127510935 | Shew_R0068 | - | 08 Ser tRNA
|

2350595 | 2350671 | + | 77 | 127510935 | Shew_R0069 | - | 13 Val tRNA
|

2350692 | 2350768 | + | 77 | 127510935 | Shew_R0070 | - | 13 Val tRNA
|

2378777 | 2378861 | + | 85 | 127510935 | Shew_R0071 | - | 18 Tyr tRNA
|

2378893 | 2378977 | + | 85 | 127510935 | Shew_R0072 | - | 18 Tyr tRNA
|

2379018 | 2379102 | + | 85 | 127510935 | Shew_R0073 | - | 18 Tyr tRNA
|

2385603 | 2385678 | + | 76 | 127510935 | Shew_R0074 | - | 07 Asn tRNA
|

2385721 | 2385796 | + | 76 | 127510935 | Shew_R0075 | - | 07 Asn tRNA
|

2385823 | 2385898 | + | 76 | 127510935 | Shew_R0076 | - | 07 Asn tRNA
|

2385923 | 2385998 | + | 76 | 127510935 | Shew_R0077 | - | 07 Asn tRNA
|

2445114 | 2445202 | - | 89 | 127510935 | Shew_R0078 | - | Xaa tRNA |

2445296 | 2445372 | - | 77 | 127510935 | Shew_R0079 | - | 06 Asp tRNA
|

2445422 | 2445498 | - | 77 | 127510935 | Shew_R0080 | - | 06 Asp tRNA
|

2751361 | 2751492 | - | 132 | 127510935 | Shew_R0081 | - | 5S ribosomal RNA |

2751726 | 2754618 | - | 2893 | 127510935 | Shew_R0082 | - | 23S ribosomal RNA |

2754864 | 2754939 | - | 76 | 127510935 | Shew_R0083 | - | 02 Ala tRNA
|

2755054 | 2755130 | - | 77 | 127510935 | Shew_R0084 | - | 14 Ile tRNA
|

2755324 | 2756880 | - | 1557 | 127510935 | Shew_R0085 | - | 16S ribosomal RNA |

2928131 | 2928247 | - | 117 | 127510935 | Shew_R0086 | - | SRP RNA; RNA component of signal recognition particle |

2953121 | 2953196 | - | 76 | 127510935 | Shew_R0087 | - | 09 His tRNA
|

2953205 | 2953281 | - | 77 | 127510935 | Shew_R0088 | - | 11 Arg tRNA
|

2953345 | 2953421 | - | 77 | 127510935 | Shew_R0089 | - | 03 Pro tRNA
|

3110419 | 3110571 | - | 153 | 127510935 | Shew_R0090 | - | |

3354950 | 3355026 | - | 77 | 127510935 | Shew_R0091 | - | 16 Met tRNA
|

3355130 | 3355215 | - | 86 | 127510935 | Shew_R0092 | - | 15 Leu tRNA
|

3456504 | 3456588 | - | 85 | 127510935 | Shew_R0093 | - | 15 Leu tRNA
|

3456643 | 3456717 | - | 75 | 127510935 | Shew_R0094 | - | 05 Gln tRNA
|

3456763 | 3456847 | - | 85 | 127510935 | Shew_R0095 | - | 15 Leu tRNA
|

3456980 | 3457056 | - | 77 | 127510935 | Shew_R0096 | - | 16 Met tRNA
|

3457077 | 3457151 | - | 75 | 127510935 | Shew_R0097 | - | 05 Gln tRNA
|

3457177 | 3457251 | - | 75 | 127510935 | Shew_R0098 | - | 05 Gln tRNA
|

3457300 | 3457384 | - | 85 | 127510935 | Shew_R0099 | - | 15 Leu tRNA
|

3457454 | 3457530 | - | 77 | 127510935 | Shew_R0100 | - | 16 Met tRNA
|

3483012 | 3483088 | - | 77 | 127510935 | Shew_R0101 | - | 20 Trp tRNA
|

3484324 | 3484444 | - | 121 | 127510935 | Shew_R0102 | - | 5S ribosomal RNA |

3484613 | 3487505 | - | 2893 | 127510935 | Shew_R0103 | - | 23S ribosomal RNA |

3487746 | 3489302 | - | 1557 | 127510935 | Shew_R0104 | - | 16S ribosomal RNA |

3497824 | 3497899 | + | 76 | 127510935 | Shew_R0105 | - | 17 Phe tRNA
|

3884270 | 3884356 | - | 87 | 127510935 | Shew_R0107 | - | 15 Leu tRNA
|

3884408 | 3884492 | - | 85 | 127510935 | Shew_R0108 | - | 15 Leu tRNA
|

4112264 | 4112384 | - | 121 | 127510935 | Shew_R0109 | - | 5S ribosomal RNA |

4112494 | 4115386 | - | 2893 | 127510935 | Shew_R0110 | - | 23S ribosomal RNA |

4115627 | 4117183 | - | 1557 | 127510935 | Shew_R0111 | - | 16S ribosomal RNA |

4118817 | 4118937 | - | 121 | 127510935 | Shew_R0112 | - | 5S ribosomal RNA |

4118943 | 4119018 | - | 76 | 127510935 | Shew_R0113 | - | 12 Thr tRNA
|

4119098 | 4119229 | - | 132 | 127510935 | Shew_R0114 | - | 5S ribosomal RNA |

4119331 | 4122223 | - | 2893 | 127510935 | Shew_R0115 | - | 23S ribosomal RNA |

4122468 | 4122543 | - | 76 | 127510935 | Shew_R0116 | - | 02 Ala tRNA
|

4122658 | 4122734 | - | 77 | 127510935 | Shew_R0117 | - | 14 Ile tRNA
|

4122843 | 4124399 | - | 1557 | 127510935 | Shew_R0118 | - | 16S ribosomal RNA |

4434579 | 4434655 | - | 77 | 127510935 | Shew_R0119 | - | 06 Asp tRNA
|

4434691 | 4434811 | - | 121 | 127510935 | Shew_R0120 | - | 5S ribosomal RNA |

4434911 | 4437803 | - | 2893 | 127510935 | Shew_R0121 | - | 23S ribosomal RNA |

4438044 | 4439600 | - | 1557 | 127510935 | Shew_R0122 | - | 16S ribosomal RNA |

4535054 | 4535174 | - | 121 | 127510935 | Shew_R0123 | - | 5S ribosomal RNA |

4535274 | 4538166 | - | 2893 | 127510935 | Shew_R0124 | - | 23S ribosomal RNA |

4538407 | 4539962 | - | 1556 | 127510935 | Shew_R0125 | - | 16S ribosomal RNA |