Материалы:NC 008228

LOCUS NC_008228 5187005 bp DNA circular BCT 30-JUN-2006 DEFINITION Pseudoalteromonas atlantica T6c, complete genome. ACCESSION NC_008228 VERSION NC_008228.1 GI:109896332 KEYWORDS . SOURCE Pseudoalteromonas atlantica T6c ORGANISM Pseudoalteromonas atlantica T6c Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas. REFERENCE 1 (bases 1 to 5187005) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Karls,A.C., Bartlett,D., Higgins,B.P. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Pseudoalteromonas atlantica T6c JOURNAL Unpublished REFERENCE 2 (bases 1 to 5187005) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-JUN-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5187005) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Karls,A.C., Bartlett,D., Higgins,B.P. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (15-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000388. URL -- http://www.jgi.doe.gov JGI Project ID: 4000130 Source DNA and bacteria available from Anna C. Karls (akarls@uga.edu) Contacts: Anna C. Karls (akarls@uga.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

36085 | 37615 | + | 1531 | 109896332 | Patl_R0001 | - | 16S ribosomal RNA |

37720 | 37795 | + | 76 | 109896332 | Patl_R0002 | - | 02 Ala tRNA
|

37814 | 37890 | + | 77 | 109896332 | Patl_R0003 | - | 14 Ile tRNA
|

38270 | 41154 | + | 2885 | 109896332 | Patl_R0004 | - | 23S ribosomal RNA |

41317 | 41432 | + | 116 | 109896332 | Patl_R0005 | - | 5S ribosomal RNA |

88587 | 88662 | - | 76 | 109896332 | Patl_R0006 | - | 17 Phe tRNA
|

384670 | 384746 | - | 77 | 109896332 | Patl_R0007 | - | 11 Arg tRNA
|

458952 | 460482 | + | 1531 | 109896332 | Patl_R0008 | - | 16S ribosomal RNA |

460587 | 460662 | + | 76 | 109896332 | Patl_R0009 | - | 02 Ala tRNA
|

460681 | 460757 | + | 77 | 109896332 | Patl_R0010 | - | 14 Ile tRNA
|

461137 | 464021 | + | 2885 | 109896332 | Patl_R0011 | - | 23S ribosomal RNA |

464285 | 464400 | + | 116 | 109896332 | Patl_R0012 | - | 5S ribosomal RNA |

677910 | 677986 | + | 77 | 109896332 | Patl_R0013 | - | 20 Trp tRNA
|

820728 | 821023 | + | 296 | 109896332 | Patl_R0014 | - | RNaseP RNA |

915633 | 915722 | + | 90 | 109896332 | Patl_R0015 | - | 08 Ser tRNA
|

1202293 | 1203823 | + | 1531 | 109896332 | Patl_R0016 | - | 16S ribosomal RNA |

1203928 | 1204003 | + | 76 | 109896332 | Patl_R0017 | - | 02 Ala tRNA
|

1204022 | 1204098 | + | 77 | 109896332 | Patl_R0018 | - | 14 Ile tRNA
|

1204478 | 1207362 | + | 2885 | 109896332 | Patl_R0019 | - | 23S ribosomal RNA |

1207525 | 1207640 | + | 116 | 109896332 | Patl_R0020 | - | 5S ribosomal RNA |

1380226 | 1380383 | - | 158 | 109896332 | Patl_R0021 | - | |

1385058 | 1385134 | - | 77 | 109896332 | Patl_R0022 | - | 16 Met tRNA
|

1609448 | 1610978 | + | 1531 | 109896332 | Patl_R0023 | - | 16S ribosomal RNA |

1611083 | 1611158 | + | 76 | 109896332 | Patl_R0024 | - | 02 Ala tRNA
|

1611177 | 1611253 | + | 77 | 109896332 | Patl_R0025 | - | 14 Ile tRNA
|

1611633 | 1614517 | + | 2885 | 109896332 | Patl_R0026 | - | 23S ribosomal RNA |

1614680 | 1614795 | + | 116 | 109896332 | Patl_R0027 | - | 5S ribosomal RNA |

1619302 | 1619406 | + | 105 | 109896332 | Patl_R0028 | - | |

1623355 | 1623431 | + | 77 | 109896332 | Patl_R0029 | - | 20 Trp tRNA
|

1882865 | 1882949 | + | 85 | 109896332 | Patl_R0030 | - | 15 Leu tRNA
|

2026333 | 2026409 | + | 77 | 109896332 | Patl_R0031 | - | 16 Met tRNA
|

2032735 | 2032850 | + | 116 | 109896332 | Patl_R0032 | - | |

2078340 | 2078693 | - | 354 | 109896332 | Patl_R0033 | - | tmRNA |

2299796 | 2299872 | + | 77 | 109896332 | Patl_R0034 | - | 03 Pro tRNA
|

2337564 | 2337664 | + | 101 | 109896332 | Patl_R0035 | - | |

2725601 | 2725677 | - | 77 | 109896332 | Patl_R0036 | - | 16 Met tRNA
|

2726512 | 2726588 | - | 77 | 109896332 | Patl_R0037 | - | 16 Met tRNA
|

2877458 | 2877534 | - | 77 | 109896332 | Patl_R0038 | - | 06 Asp tRNA
|

2877561 | 2877637 | - | 77 | 109896332 | Patl_R0039 | - | 06 Asp tRNA
|

2877670 | 2877746 | - | 77 | 109896332 | Patl_R0040 | - | 06 Asp tRNA
|

2932694 | 2932825 | + | 132 | 109896332 | Patl_R0041 | - | |

2976579 | 2976665 | - | 87 | 109896332 | Patl_R0042 | - | 15 Leu tRNA
|

2976717 | 2976790 | - | 74 | 109896332 | Patl_R0043 | - | 19 Cys tRNA
|

2976865 | 2976939 | - | 75 | 109896332 | Patl_R0044 | - | 01 Gly tRNA
|

2981810 | 2981901 | - | 92 | 109896332 | Patl_R0045 | - | 08 Ser tRNA
|

2981961 | 2982052 | - | 92 | 109896332 | Patl_R0046 | - | 08 Ser tRNA
|

3042519 | 3042595 | - | 77 | 109896332 | Patl_R0047 | - | 13 Val tRNA
|

3111841 | 3111915 | + | 75 | 109896332 | Patl_R0048 | - | 05 Gln tRNA
|

3120067 | 3120143 | + | 77 | 109896332 | Patl_R0049 | - | 16 Met tRNA
|

3120190 | 3120274 | + | 85 | 109896332 | Patl_R0050 | - | 15 Leu tRNA
|

3120279 | 3120353 | + | 75 | 109896332 | Patl_R0051 | - | 05 Gln tRNA
|

3120390 | 3120464 | + | 75 | 109896332 | Patl_R0052 | - | 05 Gln tRNA
|

3535582 | 3535657 | - | 76 | 109896332 | Patl_R0053 | - | 04 Glu tRNA
|

3535988 | 3536063 | - | 76 | 109896332 | Patl_R0054 | - | 04 Glu tRNA
|

3536243 | 3536318 | - | 76 | 109896332 | Patl_R0055 | - | 04 Glu tRNA
|

3536466 | 3536541 | - | 76 | 109896332 | Patl_R0056 | - | 02 Ala tRNA
|

3538709 | 3538784 | + | 76 | 109896332 | Patl_R0057 | - | 13 Val tRNA
|

3538942 | 3539017 | + | 76 | 109896332 | Patl_R0058 | - | 13 Val tRNA
|

3539083 | 3539158 | + | 76 | 109896332 | Patl_R0059 | - | 13 Val tRNA
|

3560104 | 3560179 | - | 76 | 109896332 | Patl_R0060 | - | 10 Lys tRNA
|

3560215 | 3560290 | - | 76 | 109896332 | Patl_R0061 | - | 10 Lys tRNA
|

3590980 | 3591056 | + | 77 | 109896332 | Patl_R0062 | - | 07 Asn tRNA
|

3591151 | 3591227 | + | 77 | 109896332 | Patl_R0063 | - | 07 Asn tRNA
|

3642021 | 3642097 | - | 77 | 109896332 | Patl_R0064 | - | 11 Arg tRNA
|

3642145 | 3642221 | - | 77 | 109896332 | Patl_R0065 | - | 11 Arg tRNA
|

3642328 | 3642418 | - | 91 | 109896332 | Patl_R0066 | - | 08 Ser tRNA
|

3740303 | 3740377 | + | 75 | 109896332 | Patl_R0067 | - | 11 Arg tRNA
|

3782051 | 3782135 | - | 85 | 109896332 | Patl_R0068 | - | 15 Leu tRNA
|

3782139 | 3782214 | - | 76 | 109896332 | Patl_R0069 | - | 09 His tRNA
|

3782243 | 3782319 | - | 77 | 109896332 | Patl_R0070 | - | 11 Arg tRNA
|

3782350 | 3782426 | - | 77 | 109896332 | Patl_R0071 | - | 03 Pro tRNA
|

4180208 | 4180282 | - | 75 | 109896332 | Patl_R0072 | - | 01 Gly tRNA
|

4180333 | 4180407 | - | 75 | 109896332 | Patl_R0073 | - | 01 Gly tRNA
|

4278490 | 4278575 | - | 86 | 109896332 | Patl_R0074 | - | 15 Leu tRNA
|

4810989 | 4811064 | - | 76 | 109896332 | Patl_R0075 | - | 12 Thr tRNA
|

4811071 | 4811145 | - | 75 | 109896332 | Patl_R0076 | - | 01 Gly tRNA
|

4811184 | 4811268 | - | 85 | 109896332 | Patl_R0077 | - | 18 Tyr tRNA
|

4811276 | 4811351 | - | 76 | 109896332 | Patl_R0078 | - | 12 Thr tRNA
|

4833103 | 4833218 | - | 116 | 109896332 | Patl_R0079 | - | 5S ribosomal RNA |

4833482 | 4836366 | - | 2885 | 109896332 | Patl_R0080 | - | 23S ribosomal RNA |

4836746 | 4836822 | - | 77 | 109896332 | Patl_R0081 | - | 14 Ile tRNA
|

4836841 | 4836916 | - | 76 | 109896332 | Patl_R0082 | - | 02 Ala tRNA
|

4837021 | 4838551 | - | 1531 | 109896332 | Patl_R0083 | - | 16S ribosomal RNA |

5087974 | 5088049 | + | 76 | 109896332 | Patl_R0084 | - | 12 Thr tRNA
|