Материалы:NC 009783

LOCUS NC_009783 3765351 bp DNA circular BCT 07-SEP-2007 DEFINITION Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence. ACCESSION NC_009783 VERSION NC_009783.1 GI:156972381 KEYWORDS . SOURCE Vibrio harveyi ATCC BAA-1116 ORGANISM Vibrio harveyi ATCC BAA-1116 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 3765351) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-SEP-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 3765351) AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C., Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N., Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C., Tu,K.C., Irgon,J. and Wilson,R.K. CONSRTM The Vibrio harveyi Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000789. Vibrio harveyi belongs to the group of bioluminescent bacteria that 'glow in the dark,' just as the commonly known firefly. Based on their 16S ribosomal RNA (rRNA) classification, they belong to the group of bacteria known as Proteobacteria, which is further sub-divided into five groups, including the gamma proteobacteria. This group includes many families, one of which is the Vibrionaceae (bioluminescent bacteria). One of the Vibrios is a human pathogen and causes cholera. Vibrio harveyi can be found globally in marine environments, either in a free-living state or in symbiosis with marine life. The sequenced strain is BB120, ATCC BAA-1116 http://www.atcc.org/common/catalog/numSearch/numResults.cfm Sequence/Assembly The genome of Vibrio harveyi was sequenced to 8X coverage using a combination of plasmid and fosmid end sequences. Additional 454 sequence reads bring the present coverage to 10.8X. Assembly was performed using the PCAP software (Genome Res. 13(9):2164-70 2003). The genome has undergone automated sequence improvement (pre-finishing) followed by manual finishing, and automated annotation. The National Science Foundation (NSF) is providing funding for the complete sequence of the Vibrio harveyi genome. Annotation Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.For questions regarding this assembly or project, please visit the Vibrio harveyi genome page (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and choose the designated contact person. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

818 | 1359 | - | 542 | 156972381 | VIBHAR_00002 | - | small subunit ribosomal RNA |

105772 | 105845 | - | 74 | 156972381 | VIBHAR_00100 | - | 16 Met tRNA
|

106007 | 106079 | - | 73 | 156972381 | VIBHAR_00101 | - | 01 Gly tRNA
|

106118 | 106190 | - | 73 | 156972381 | VIBHAR_00102 | - | 01 Gly tRNA
|

106229 | 106301 | - | 73 | 156972381 | VIBHAR_00103 | - | 01 Gly tRNA
|

106323 | 106396 | - | 74 | 156972381 | VIBHAR_00104 | - | 16 Met tRNA
|

106439 | 106511 | - | 73 | 156972381 | VIBHAR_00105 | - | 01 Gly tRNA
|

106605 | 106678 | - | 74 | 156972381 | VIBHAR_00106 | - | 16 Met tRNA
|

106721 | 106793 | - | 73 | 156972381 | VIBHAR_00107 | - | 01 Gly tRNA
|

106815 | 106888 | - | 74 | 156972381 | VIBHAR_00108 | - | 16 Met tRNA
|

106931 | 107003 | - | 73 | 156972381 | VIBHAR_00109 | - | 01 Gly tRNA
|

107025 | 107098 | - | 74 | 156972381 | VIBHAR_00110 | - | 16 Met tRNA
|

107141 | 107213 | - | 73 | 156972381 | VIBHAR_00111 | - | 01 Gly tRNA
|

190817 | 190933 | - | 117 | 156972381 | VIBHAR_00193 | - | 5S ribosomal RNA |

194249 | 194321 | - | 73 | 156972381 | VIBHAR_00195 | - | 02 Ala tRNA
|

194368 | 194441 | - | 74 | 156972381 | VIBHAR_00196 | - | 14 Ile tRNA
|

195530 | 196071 | - | 542 | 156972381 | VIBHAR_00198 | - | small subunit ribosomal RNA |

196468 | 196584 | - | 117 | 156972381 | VIBHAR_00199 | - | 5S ribosomal RNA |

199870 | 199942 | - | 73 | 156972381 | VIBHAR_00201 | - | 02 Ala tRNA
|

199989 | 200062 | - | 74 | 156972381 | VIBHAR_00202 | - | 14 Ile tRNA
|

201151 | 201692 | - | 542 | 156972381 | VIBHAR_00204 | - | small subunit ribosomal RNA |

235591 | 235663 | - | 73 | 156972381 | VIBHAR_00234 | - | 12 Thr tRNA
|

235680 | 235751 | - | 72 | 156972381 | VIBHAR_00235 | - | 01 Gly tRNA
|

235790 | 235871 | - | 82 | 156972381 | VIBHAR_00236 | - | 18 Tyr tRNA
|

235927 | 235999 | - | 73 | 156972381 | VIBHAR_00237 | - | 12 Thr tRNA
|

243017 | 243090 | - | 74 | 156972381 | VIBHAR_00245 | - | 20 Trp tRNA
|

243162 | 243235 | - | 74 | 156972381 | VIBHAR_00246 | - | 06 Asp tRNA
|

243268 | 243384 | - | 117 | 156972381 | VIBHAR_00247 | - | 5S ribosomal RNA |

246718 | 246790 | - | 73 | 156972381 | VIBHAR_00250 | - | 13 Val tRNA
|

246824 | 246896 | - | 73 | 156972381 | VIBHAR_00251 | - | 10 Lys tRNA
|

246902 | 246974 | - | 73 | 156972381 | VIBHAR_00252 | - | 04 Glu tRNA
|

248088 | 248629 | - | 542 | 156972381 | VIBHAR_00254 | - | small subunit ribosomal RNA |

311421 | 311508 | - | 88 | 156972381 | VIBHAR_00325 | - | 08 Ser tRNA
|

311600 | 311716 | - | 117 | 156972381 | VIBHAR_00326 | - | 5S ribosomal RNA |

315032 | 315104 | - | 73 | 156972381 | VIBHAR_00328 | - | 02 Ala tRNA
|

315151 | 315224 | - | 74 | 156972381 | VIBHAR_00329 | - | 14 Ile tRNA
|

316276 | 316817 | - | 542 | 156972381 | VIBHAR_00331 | - | small subunit ribosomal RNA |

336058 | 336477 | + | 420 | 156972381 | VIBHAR_00349 | - | CsrB/RsmB RNA family |

359456 | 359529 | - | 74 | 156972381 | VIBHAR_00373 | - | 06 Asp tRNA
|

359561 | 359677 | - | 117 | 156972381 | VIBHAR_00374 | - | 5S ribosomal RNA |

359804 | 362688 | + | 2885 | 156972381 | VIBHAR_03723 | - | 23S ribosomal RNA |

363014 | 363086 | - | 73 | 156972381 | VIBHAR_00375 | - | 13 Val tRNA
|

363120 | 363192 | - | 73 | 156972381 | VIBHAR_00376 | - | 10 Lys tRNA
|

363198 | 363270 | - | 73 | 156972381 | VIBHAR_00377 | - | 04 Glu tRNA
|

364348 | 364889 | - | 542 | 156972381 | VIBHAR_00379 | - | small subunit ribosomal RNA |

449630 | 450171 | + | 542 | 156972381 | VIBHAR_00464 | - | small subunit ribosomal RNA |

451285 | 451357 | + | 73 | 156972381 | VIBHAR_00466 | - | 04 Glu tRNA
|

451363 | 451435 | + | 73 | 156972381 | VIBHAR_00467 | - | 10 Lys tRNA
|

451448 | 451520 | + | 73 | 156972381 | VIBHAR_00468 | - | 02 Ala tRNA
|

451561 | 451633 | + | 73 | 156972381 | VIBHAR_00469 | - | 13 Val tRNA
|

454882 | 454998 | + | 117 | 156972381 | VIBHAR_00472 | - | 5S ribosomal RNA |

455031 | 455104 | + | 74 | 156972381 | VIBHAR_00473 | - | 06 Asp tRNA
|

468027 | 468100 | + | 74 | 156972381 | VIBHAR_00485 | - | 11 Arg tRNA
|

468139 | 468211 | + | 73 | 156972381 | VIBHAR_00486 | - | 09 His tRNA
|

468291 | 468364 | + | 74 | 156972381 | VIBHAR_00487 | - | 03 Pro tRNA
|

468414 | 468486 | + | 73 | 156972381 | VIBHAR_00488 | - | 09 His tRNA
|

468554 | 468627 | + | 74 | 156972381 | VIBHAR_00489 | - | 03 Pro tRNA
|

557336 | 557451 | + | 116 | 156972381 | VIBHAR_00573 | - | Spot 42 RNA |

835692 | 835764 | - | 73 | 156972381 | VIBHAR_00847 | - | 16 Met tRNA
|

884627 | 884934 | + | 308 | 156972381 | VIBHAR_00893 | - | RNA component of RNase P |

1020273 | 1020814 | + | 542 | 156972381 | VIBHAR_01008 | - | small subunit ribosomal RNA |

1021935 | 1022007 | + | 73 | 156972381 | VIBHAR_01010 | - | 02 Ala tRNA
|

1022052 | 1022124 | + | 73 | 156972381 | VIBHAR_01011 | - | 04 Glu tRNA
|

1025411 | 1025527 | + | 117 | 156972381 | VIBHAR_01013 | - | 5S ribosomal RNA |

1025559 | 1025632 | + | 74 | 156972381 | VIBHAR_01014 | - | 06 Asp tRNA
|

1025671 | 1025744 | + | 74 | 156972381 | VIBHAR_01015 | - | 20 Trp tRNA
|

1139978 | 1140344 | - | 367 | 156972381 | VIBHAR_01123 | - | tmRNA |

1200401 | 1200523 | - | 123 | 156972381 | VIBHAR_01182 | - | GcvB RNA |

1252736 | 1252817 | - | 82 | 156972381 | VIBHAR_01233 | - | 15 Leu tRNA
|

1252875 | 1252946 | - | 72 | 156972381 | VIBHAR_01235 | - | 05 Gln tRNA
|

1252996 | 1253077 | - | 82 | 156972381 | VIBHAR_01236 | - | 15 Leu tRNA
|

1253102 | 1253183 | - | 82 | 156972381 | VIBHAR_01237 | - | 15 Leu tRNA
|

1253205 | 1253278 | - | 74 | 156972381 | VIBHAR_01238 | - | 16 Met tRNA
|

1253305 | 1253386 | - | 82 | 156972381 | VIBHAR_01239 | - | 15 Leu tRNA
|

1253460 | 1253533 | - | 74 | 156972381 | VIBHAR_01240 | - | 16 Met tRNA
|

1253616 | 1253687 | - | 72 | 156972381 | VIBHAR_01241 | - | 05 Gln tRNA
|

1253722 | 1253803 | - | 82 | 156972381 | VIBHAR_01242 | - | 15 Leu tRNA
|

1253846 | 1253919 | - | 74 | 156972381 | VIBHAR_01243 | - | 16 Met tRNA
|

1269123 | 1269196 | + | 74 | 156972381 | VIBHAR_01261 | - | 03 Pro tRNA
|

1286663 | 1286736 | - | 74 | 156972381 | VIBHAR_01275 | - | 11 Arg tRNA
|

1405757 | 1405830 | + | 74 | 156972381 | VIBHAR_01392 | - | 11 Arg tRNA
|

1458919 | 1459000 | - | 82 | 156972381 | VIBHAR_01440 | - | 18 Tyr tRNA
|

1459104 | 1459185 | - | 82 | 156972381 | VIBHAR_01441 | - | 18 Tyr tRNA
|

1459289 | 1459370 | - | 82 | 156972381 | VIBHAR_01442 | - | 18 Tyr tRNA
|

1459474 | 1459555 | - | 82 | 156972381 | VIBHAR_01443 | - | 18 Tyr tRNA
|

1472470 | 1472569 | + | 100 | 156972381 | VIBHAR_01455 | - | bacterial signal recognition particle RNA |

1631898 | 1631982 | + | 85 | 156972381 | VIBHAR_01622 | - | 08 Ser tRNA
|

2183616 | 2183689 | + | 74 | 156972381 | VIBHAR_02186 | - | 13 Val tRNA
|

2183739 | 2183812 | + | 74 | 156972381 | VIBHAR_02187 | - | 13 Val tRNA
|

2767549 | 2767621 | - | 73 | 156972381 | VIBHAR_02742 | - | 01 Gly tRNA
|

2767636 | 2767719 | - | 84 | 156972381 | VIBHAR_02743 | - | 15 Leu tRNA
|

2767801 | 2767873 | - | 73 | 156972381 | VIBHAR_02744 | - | 01 Gly tRNA
|

2767914 | 2767984 | - | 71 | 156972381 | VIBHAR_02745 | - | 19 Cys tRNA
|

2851918 | 2851989 | + | 72 | 156972381 | VIBHAR_02828 | - | 01 Gly tRNA
|

2983624 | 2983718 | + | 95 | 156972381 | VIBHAR_02960 | - | Qrr RNA |

2986404 | 2986476 | + | 73 | 156972381 | VIBHAR_02962 | - | 07 Asn tRNA
|

3051971 | 3052058 | + | 88 | 156972381 | VIBHAR_03029 | - | 08 Ser tRNA
|

3272091 | 3272457 | - | 367 | 156972381 | VIBHAR_03245 | - | CsrB/RsmB RNA family |

3438629 | 3438702 | - | 74 | 156972381 | VIBHAR_03399 | - | 16 Met tRNA
|

3438762 | 3438842 | - | 81 | 156972381 | VIBHAR_03400 | - | 15 Leu tRNA
|

3554360 | 3554433 | - | 74 | 156972381 | VIBHAR_03499 | - | 11 Arg tRNA
|

3554496 | 3554569 | - | 74 | 156972381 | VIBHAR_03500 | - | 11 Arg tRNA
|

3554630 | 3554703 | - | 74 | 156972381 | VIBHAR_03501 | - | 11 Arg tRNA
|

3554764 | 3554837 | - | 74 | 156972381 | VIBHAR_03502 | - | 11 Arg tRNA
|

3554898 | 3554971 | - | 74 | 156972381 | VIBHAR_03503 | - | 11 Arg tRNA
|

3555032 | 3555105 | - | 74 | 156972381 | VIBHAR_03504 | - | 11 Arg tRNA
|

3555194 | 3555282 | - | 89 | 156972381 | VIBHAR_03505 | - | 08 Ser tRNA
|

3555315 | 3555388 | - | 74 | 156972381 | VIBHAR_03506 | - | 11 Arg tRNA
|

3555423 | 3555511 | - | 89 | 156972381 | VIBHAR_03508 | - | 08 Ser tRNA
|

3603756 | 3603940 | + | 185 | 156972381 | VIBHAR_03553 | - | 6S / SsrS RNA |

3640404 | 3640476 | + | 73 | 156972381 | VIBHAR_03594 | - | 17 Phe tRNA
|

3640531 | 3640603 | + | 73 | 156972381 | VIBHAR_03595 | - | 12 Thr tRNA
|

3640614 | 3640686 | + | 73 | 156972381 | VIBHAR_03596 | - | 17 Phe tRNA
|

3640733 | 3640805 | + | 73 | 156972381 | VIBHAR_03597 | - | 07 Asn tRNA
|

3640878 | 3640950 | + | 73 | 156972381 | VIBHAR_03598 | - | 12 Thr tRNA
|

3640964 | 3641036 | + | 73 | 156972381 | VIBHAR_03599 | - | 17 Phe tRNA
|

3641082 | 3641155 | + | 74 | 156972381 | VIBHAR_03600 | - | 07 Asn tRNA
|

3643310 | 3643382 | + | 73 | 156972381 | VIBHAR_03603 | - | 17 Phe tRNA
|

3643437 | 3643509 | + | 73 | 156972381 | VIBHAR_03604 | - | 12 Thr tRNA
|

3643534 | 3643606 | + | 73 | 156972381 | VIBHAR_03605 | - | 07 Asn tRNA
|

3643649 | 3643721 | + | 73 | 156972381 | VIBHAR_03606 | - | 12 Thr tRNA
|

3643740 | 3643812 | + | 73 | 156972381 | VIBHAR_03607 | - | 07 Asn tRNA
|

3645970 | 3646043 | - | 74 | 156972381 | VIBHAR_03609 | - | 06 Asp tRNA
|

3646075 | 3646191 | - | 117 | 156972381 | VIBHAR_03610 | - | 5S ribosomal RNA |

3646252 | 3646324 | - | 73 | 156972381 | VIBHAR_03611 | - | 12 Thr tRNA
|

3646425 | 3646541 | - | 117 | 156972381 | VIBHAR_03612 | - | 5S ribosomal RNA |

3649836 | 3649908 | - | 73 | 156972381 | VIBHAR_03615 | - | 02 Ala tRNA
|

3649955 | 3650028 | - | 74 | 156972381 | VIBHAR_03616 | - | 14 Ile tRNA
|

3651117 | 3651658 | - | 542 | 156972381 | VIBHAR_03618 | - | small subunit ribosomal RNA |

3663783 | 3663864 | - | 82 | 156972381 | VIBHAR_03630 | - | 15 Leu tRNA
|

3759840 | 3759913 | - | 74 | 156972381 | VIBHAR_03716 | - | 06 Asp tRNA
|

3759982 | 3760098 | - | 117 | 156972381 | VIBHAR_03717 | - | 5S ribosomal RNA |

3763418 | 3763490 | - | 73 | 156972381 | VIBHAR_03719 | - | 02 Ala tRNA
|

3763537 | 3763610 | - | 74 | 156972381 | VIBHAR_03720 | - | 14 Ile tRNA
|

3764699 | 3765240 | - | 542 | 156972381 | VIBHAR_03722 | - | small subunit ribosomal RNA |