Материалы:NC 007963

LOCUS NC_007963 3696649 bp DNA circular BCT 17-APR-2006 DEFINITION Chromohalobacter salexigens DSM 3043, complete genome. ACCESSION NC_007963 VERSION NC_007963.1 GI:92112136 KEYWORDS . SOURCE Chromohalobacter salexigens DSM 3043 ORGANISM Chromohalobacter salexigens DSM 3043 Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Chromohalobacter. REFERENCE 1 (bases 1 to 3696649) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Saunders,E., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromohalobacter salexigens DSM 3043 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3696649) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (17-APR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3696649) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Saunders,E., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (15-MAR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000285. URL -- http://www.jgi.doe.gov JGI Project ID: 3634505 Source DNA available from Laszlo Csonka (lcsonka@bilbo.bio.purdue.edu) Bacteria available from DSMZ: DSM 3043 Contacts: Laszlo Csonka (lcsonka@bilbo.bio.purdue.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

454940 | 456413 | + | 1474 | 92112136 | Csal_R0001 | - | 16S ribosomal RNA |

456548 | 456624 | + | 77 | 92112136 | Csal_R0002 | - | 14 Ile tRNA
|

456732 | 456807 | + | 76 | 92112136 | Csal_R0003 | - | 02 Ala tRNA
|

456987 | 459883 | + | 2897 | 92112136 | Csal_R0004 | - | 23S ribosomal RNA |

459986 | 460101 | + | 116 | 92112136 | Csal_R0005 | - | 5S ribosomal RNA |

462206 | 462289 | + | 84 | 92112136 | Csal_R0006 | - | 18 Tyr tRNA
|

462339 | 462412 | + | 74 | 92112136 | Csal_R0007 | - | 01 Gly tRNA
|

462421 | 462495 | + | 75 | 92112136 | Csal_R0008 | - | 12 Thr tRNA
|

462617 | 462692 | + | 76 | 92112136 | Csal_R0009 | - | 20 Trp tRNA
|

522085 | 522161 | - | 77 | 92112136 | Csal_R0010 | - | 03 Pro tRNA
|

557343 | 558816 | + | 1474 | 92112136 | Csal_R0011 | - | 16S ribosomal RNA |

558957 | 559033 | + | 77 | 92112136 | Csal_R0012 | - | 14 Ile tRNA
|

559251 | 559326 | + | 76 | 92112136 | Csal_R0013 | - | 02 Ala tRNA
|

559506 | 562402 | + | 2897 | 92112136 | Csal_R0014 | - | 23S ribosomal RNA |

562505 | 562620 | + | 116 | 92112136 | Csal_R0015 | - | 5S ribosomal RNA |

580057 | 580132 | + | 76 | 92112136 | Csal_R0016 | - | 17 Phe tRNA
|

580139 | 580213 | + | 75 | 92112136 | Csal_R0017 | - | 05 Gln tRNA
|

580235 | 580310 | + | 76 | 92112136 | Csal_R0018 | - | 12 Thr tRNA
|

584792 | 584867 | + | 76 | 92112136 | Csal_R0019 | - | 12 Thr tRNA
|

705419 | 705511 | + | 93 | 92112136 | Csal_R0020 | - | 08 Ser tRNA
|

705541 | 705617 | + | 77 | 92112136 | Csal_R0021 | - | 11 Arg tRNA
|

705704 | 705780 | + | 77 | 92112136 | Csal_R0022 | - | 11 Arg tRNA
|

951832 | 951906 | + | 75 | 92112136 | Csal_R0023 | - | 10 Lys tRNA
|

951949 | 952023 | + | 75 | 92112136 | Csal_R0024 | - | 10 Lys tRNA
|

952058 | 952132 | + | 75 | 92112136 | Csal_R0025 | - | 10 Lys tRNA
|

985955 | 986030 | + | 76 | 92112136 | Csal_R0026 | - | 13 Val tRNA
|

986081 | 986157 | + | 77 | 92112136 | Csal_R0027 | - | 06 Asp tRNA
|

986206 | 986282 | + | 77 | 92112136 | Csal_R0028 | - | 06 Asp tRNA
|

986339 | 986415 | + | 77 | 92112136 | Csal_R0029 | - | 13 Val tRNA
|

986438 | 986514 | + | 77 | 92112136 | Csal_R0030 | - | 06 Asp tRNA
|

997605 | 997691 | - | 87 | 92112136 | Csal_R0031 | - | 15 Leu tRNA
|

997716 | 997802 | - | 87 | 92112136 | Csal_R0032 | - | 15 Leu tRNA
|

997838 | 997924 | - | 87 | 92112136 | Csal_R0033 | - | 15 Leu tRNA
|

1078902 | 1079036 | - | 135 | 92112136 | Csal_R0034 | - | |

1196492 | 1196568 | + | 77 | 92112136 | Csal_R0035 | - | 16 Met tRNA
|

1252992 | 1253128 | + | 137 | 92112136 | Csal_R0036 | - | |

1386433 | 1386508 | + | 76 | 92112136 | Csal_R0037 | - | 02 Ala tRNA
|

1386525 | 1386600 | + | 76 | 92112136 | Csal_R0038 | - | 04 Glu tRNA
|

1431797 | 1431872 | - | 76 | 92112136 | Csal_R0039 | - | 01 Gly tRNA
|

1548665 | 1548740 | + | 76 | 92112136 | Csal_R0040 | - | 04 Glu tRNA
|

1548764 | 1548838 | + | 75 | 92112136 | Csal_R0041 | - | 01 Gly tRNA
|

1549001 | 1549076 | + | 76 | 92112136 | Csal_R0042 | - | 04 Glu tRNA
|

1549118 | 1549192 | + | 75 | 92112136 | Csal_R0043 | - | 01 Gly tRNA
|

1549215 | 1549290 | + | 76 | 92112136 | Csal_R0044 | - | 04 Glu tRNA
|

1553348 | 1553435 | + | 88 | 92112136 | Csal_R0045 | - | 08 Ser tRNA
|

1651738 | 1651855 | + | 118 | 92112136 | Csal_R0046 | - | SRP RNA; RNA component of signal recognition particle |

1704632 | 1704863 | - | 232 | 92112136 | Csal_R0047 | - | |

1726909 | 1726985 | + | 77 | 92112136 | Csal_R0048 | - | 16 Met tRNA
|

1727230 | 1727305 | + | 76 | 92112136 | Csal_R0049 | - | 07 Asn tRNA
|

1727328 | 1727403 | + | 76 | 92112136 | Csal_R0050 | - | 07 Asn tRNA
|

1727432 | 1727507 | + | 76 | 92112136 | Csal_R0051 | - | 07 Asn tRNA
|

1733361 | 1733437 | - | 77 | 92112136 | Csal_R0052 | - | 16 Met tRNA
|

1737126 | 1737201 | - | 76 | 92112136 | Csal_R0053 | - | 05 Gln tRNA
|

2039871 | 2039947 | - | 77 | 92112136 | Csal_R0054 | - | 03 Pro tRNA
|

2078081 | 2079554 | + | 1474 | 92112136 | Csal_R0055 | - | 16S ribosomal RNA |

2079689 | 2079765 | + | 77 | 92112136 | Csal_R0056 | - | 14 Ile tRNA
|

2079887 | 2079962 | + | 76 | 92112136 | Csal_R0057 | - | 02 Ala tRNA
|

2080142 | 2083038 | + | 2897 | 92112136 | Csal_R0058 | - | 23S ribosomal RNA |

2083141 | 2083256 | + | 116 | 92112136 | Csal_R0059 | - | 5S ribosomal RNA |

2185514 | 2185603 | + | 90 | 92112136 | Csal_R0060 | - | 08 Ser tRNA
|

2185723 | 2185813 | + | 91 | 92112136 | Csal_R0061 | - | 08 Ser tRNA
|

2189682 | 2189788 | + | 107 | 92112136 | Csal_R0062 | - | |

2311526 | 2311600 | - | 75 | 92112136 | Csal_R0063 | - | 09 His tRNA
|

2311634 | 2311708 | - | 75 | 92112136 | Csal_R0064 | - | 09 His tRNA
|

2311759 | 2311835 | - | 77 | 92112136 | Csal_R0065 | - | 11 Arg tRNA
|

2311895 | 2311971 | - | 77 | 92112136 | Csal_R0066 | - | 03 Pro tRNA
|

2371927 | 2372003 | - | 77 | 92112136 | Csal_R0067 | - | 13 Val tRNA
|

2372065 | 2372141 | - | 77 | 92112136 | Csal_R0068 | - | 13 Val tRNA
|

2399776 | 2399851 | - | 76 | 92112136 | Csal_R0069 | - | 02 Ala tRNA
|

2403437 | 2403511 | + | 75 | 92112136 | Csal_R0070 | - | 01 Gly tRNA
|

2403586 | 2403659 | + | 74 | 92112136 | Csal_R0071 | - | 19 Cys tRNA
|

2403695 | 2403781 | + | 87 | 92112136 | Csal_R0072 | - | 15 Leu tRNA
|

2475702 | 2476000 | - | 299 | 92112136 | Csal_R0073 | - | RNA component of RNaseP |

2584594 | 2584678 | - | 85 | 92112136 | Csal_R0074 | - | 15 Leu tRNA
|

2715800 | 2715915 | - | 116 | 92112136 | Csal_R0075 | - | 5S ribosomal RNA |

2716018 | 2718915 | - | 2898 | 92112136 | Csal_R0076 | - | 23S ribosomal RNA |

2719183 | 2719258 | - | 76 | 92112136 | Csal_R0077 | - | 02 Ala tRNA
|

2719380 | 2719456 | - | 77 | 92112136 | Csal_R0078 | - | 14 Ile tRNA
|

2719591 | 2721064 | - | 1474 | 92112136 | Csal_R0079 | - | 16S ribosomal RNA |

2875011 | 2875087 | + | 77 | 92112136 | Csal_R0080 | - | 11 Arg tRNA
|

3160950 | 3161036 | - | 87 | 92112136 | Csal_R0081 | - | 15 Leu tRNA
|

3375098 | 3375174 | + | 77 | 92112136 | Csal_R0082 | - | 16 Met tRNA
|

3392848 | 3392963 | - | 116 | 92112136 | Csal_R0083 | - | 5S ribosomal RNA |

3393066 | 3395962 | - | 2897 | 92112136 | Csal_R0084 | - | 23S ribosomal RNA |

3396214 | 3396289 | - | 76 | 92112136 | Csal_R0085 | - | 02 Ala tRNA
|

3396453 | 3396529 | - | 77 | 92112136 | Csal_R0086 | - | 14 Ile tRNA
|

3396670 | 3398143 | - | 1474 | 92112136 | Csal_R0087 | - | 16S ribosomal RNA |

3427948 | 3428024 | - | 77 | 92112136 | Csal_R0088 | - | 16 Met tRNA
|

3428132 | 3428218 | - | 87 | 92112136 | Csal_R0089 | - | 15 Leu tRNA
|

3553307 | 3553383 | - | 77 | 92112136 | Csal_R0090 | - | 11 Arg tRNA
|