Материалы:NC 009337

LOCUS NC_009337 1966858 bp DNA circular BCT 14-AUG-2007 DEFINITION Prosthecochloris vibrioformis DSM 265, complete genome. ACCESSION NC_009337 VERSION NC_009337.1 GI:145218822 KEYWORDS . SOURCE Prosthecochloris vibrioformis DSM 265 ORGANISM Prosthecochloris vibrioformis DSM 265 Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium. REFERENCE 1 (bases 1 to 1966858) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J., Schuster,S.C., Bryant,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Prosthecochloris vibrioformis DSM 265 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1966858) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-APR-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1966858) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J., Larimer,F., Land,M., Hauser,L., Mikhailova,N., Li,T., Overmann,J., Schuster,S.C., Bryant,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (05-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000607. URL -- http://www.jgi.doe.gov JGI Project ID: 3634473 Source DNA and bacteria available from Donald A. Bryant (dab14@psu.edu) Contacts: Donald A. Bryant (dab14@psu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by Donald A. Bryant Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: By phylogeny it does not cluster with the type species of Prosthecochloris (P. aestuarii DSM 271) and it's closest relative is Chlorobium phaeovibrioides DSM 269. Also see the Comments and References of the NCBI Taxomy Browser for Prosthecochloris vibrioformis DSM 265. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

30724 | 30799 | - | 76 | 145218822 | Cvib_R0001 | - | 12 Thr tRNA
|

155961 | 156037 | + | 77 | 145218822 | Cvib_R0002 | - | 13 Val tRNA
|

191773 | 193279 | + | 1507 | 145218822 | Cvib_R0003 | - | 16S ribosomal RNA |

193441 | 193517 | + | 77 | 145218822 | Cvib_R0004 | - | 14 Ile tRNA
|

193562 | 193637 | + | 76 | 145218822 | Cvib_R0005 | - | 02 Ala tRNA
|

193777 | 196682 | + | 2906 | 145218822 | Cvib_R0006 | - | 23S ribosomal RNA |

196798 | 196917 | + | 120 | 145218822 | Cvib_R0007 | - | 5S ribosomal RNA |

221833 | 221907 | - | 75 | 145218822 | Cvib_R0008 | - | 07 Asn tRNA
|

265126 | 265198 | + | 73 | 145218822 | Cvib_R0009 | - | 01 Gly tRNA
|

411414 | 411488 | - | 75 | 145218822 | Cvib_R0010 | - | 06 Asp tRNA
|

558852 | 558924 | - | 73 | 145218822 | Cvib_R0011 | - | 02 Ala tRNA
|

653522 | 653595 | + | 74 | 145218822 | Cvib_R0012 | - | 13 Val tRNA
|

671222 | 671308 | - | 87 | 145218822 | Cvib_R0013 | - | 08 Ser tRNA
|

672620 | 672695 | - | 76 | 145218822 | Cvib_R0014 | - | 01 Gly tRNA
|

801554 | 801901 | - | 348 | 145218822 | Cvib_R0015 | - | RNaseP RNA |

802967 | 803048 | - | 82 | 145218822 | Cvib_R0016 | - | 15 Leu tRNA
|

840408 | 840484 | - | 77 | 145218822 | Cvib_R0017 | - | 13 Val tRNA
|

869339 | 869414 | + | 76 | 145218822 | Cvib_R0018 | - | 16 Met tRNA
|

1045309 | 1045382 | + | 74 | 145218822 | Cvib_R0019 | - | 19 Cys tRNA
|

1162288 | 1162363 | - | 76 | 145218822 | Cvib_R0020 | - | 03 Pro tRNA
|

1162376 | 1162448 | - | 73 | 145218822 | Cvib_R0021 | - | 11 Arg tRNA
|

1182416 | 1182492 | + | 77 | 145218822 | Cvib_R0022 | - | 16 Met tRNA
|

1182496 | 1182571 | + | 76 | 145218822 | Cvib_R0023 | - | 01 Gly tRNA
|

1189890 | 1189979 | - | 90 | 145218822 | Cvib_R0024 | - | 08 Ser tRNA
|

1189991 | 1190073 | - | 83 | 145218822 | Cvib_R0025 | - | 08 Ser tRNA
|

1190335 | 1190424 | - | 90 | 145218822 | Cvib_R0026 | - | 08 Ser tRNA
|

1238940 | 1239021 | + | 82 | 145218822 | Cvib_R0027 | - | 15 Leu tRNA
|

1239038 | 1239124 | + | 87 | 145218822 | Cvib_R0028 | - | 15 Leu tRNA
|

1250474 | 1250549 | - | 76 | 145218822 | Cvib_R0029 | - | 10 Lys tRNA
|

1256678 | 1256749 | - | 72 | 145218822 | Cvib_R0030 | - | 04 Glu tRNA
|

1256758 | 1256833 | - | 76 | 145218822 | Cvib_R0031 | - | 09 His tRNA
|

1256864 | 1256939 | - | 76 | 145218822 | Cvib_R0032 | - | 11 Arg tRNA
|

1256964 | 1257036 | - | 73 | 145218822 | Cvib_R0033 | - | 03 Pro tRNA
|

1267599 | 1267673 | + | 75 | 145218822 | Cvib_R0034 | - | 05 Gln tRNA
|

1286491 | 1286889 | - | 399 | 145218822 | Cvib_R0035 | - | tmRNA |

1365260 | 1365333 | + | 74 | 145218822 | Cvib_R0036 | - | 16 Met tRNA
|

1365370 | 1365443 | + | 74 | 145218822 | Cvib_R0037 | - | 04 Glu tRNA
|

1365491 | 1365567 | + | 77 | 145218822 | Cvib_R0038 | - | 11 Arg tRNA
|

1365578 | 1365649 | + | 72 | 145218822 | Cvib_R0039 | - | 05 Gln tRNA
|

1674295 | 1674367 | - | 73 | 145218822 | Cvib_R0040 | - | 17 Phe tRNA
|

1709556 | 1709637 | - | 82 | 145218822 | Cvib_R0041 | - | 15 Leu tRNA
|

1709674 | 1709746 | - | 73 | 145218822 | Cvib_R0042 | - | 10 Lys tRNA
|

1753991 | 1754079 | + | 89 | 145218822 | Cvib_R0043 | - | 15 Leu tRNA
|

1762444 | 1762517 | - | 74 | 145218822 | Cvib_R0044 | - | 03 Pro tRNA
|

1795284 | 1795356 | - | 73 | 145218822 | Cvib_R0045 | - | 20 Trp tRNA
|

1795385 | 1795457 | - | 73 | 145218822 | Cvib_R0046 | - | 12 Thr tRNA
|

1795482 | 1795564 | - | 83 | 145218822 | Cvib_R0047 | - | 18 Tyr tRNA
|

1795578 | 1795650 | - | 73 | 145218822 | Cvib_R0048 | - | 12 Thr tRNA
|

1809396 | 1809471 | - | 76 | 145218822 | Cvib_R0049 | - | 11 Arg tRNA
|

1923540 | 1923643 | - | 104 | 145218822 | Cvib_R0050 | - | SRP RNA; RNA component of signal recognition particle |

1933562 | 1933637 | - | 76 | 145218822 | Cvib_R0051 | - | 02 Ala tRNA
|