Материалы:NC 008609

LOCUS NC_008609 4008000 bp DNA circular BCT 12-DEC-2006 DEFINITION Pelobacter propionicus DSM 2379, complete genome. ACCESSION NC_008609 VERSION NC_008609.1 GI:118578449 KEYWORDS . SOURCE Pelobacter propionicus DSM 2379 ORGANISM Pelobacter propionicus DSM 2379 Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter. REFERENCE 1 (bases 1 to 4008000) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Lovley,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Pelobacter propionicus DSM 2379 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4008000) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-DEC-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4008000) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Lovley,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (31-OCT-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000482. URL -- http://www.jgi.doe.gov JGI Project ID: 3436113 Source DNA available from Derek Lovley (dlovley@bio.umass.edu) Bacteria available from DSMZ: DSM 2379 Contacts: Derek Lovley (dlovley@bio.umass.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

300980 | 301085 | - | 106 | 118578449 | Ppro_R0001 | - | SRP RNA; RNA component of signal recognition particle |

301119 | 301209 | - | 91 | 118578449 | Ppro_R0002 | - | 08 Ser tRNA
|

354755 | 354841 | + | 87 | 118578449 | Ppro_R0003 | - | 15 Leu tRNA
|

440109 | 440184 | - | 76 | 118578449 | Ppro_R0004 | - | 02 Ala tRNA
|

654762 | 654849 | + | 88 | 118578449 | Ppro_R0006 | - | 08 Ser tRNA
|

703558 | 703633 | + | 76 | 118578449 | Ppro_R0007 | - | 12 Thr tRNA
|

703659 | 703743 | + | 85 | 118578449 | Ppro_R0008 | - | 18 Tyr tRNA
|

703849 | 703925 | + | 77 | 118578449 | Ppro_R0009 | - | 01 Gly tRNA
|

703934 | 704009 | + | 76 | 118578449 | Ppro_R0010 | - | 12 Thr tRNA
|

705513 | 705589 | + | 77 | 118578449 | Ppro_R0011 | - | 20 Trp tRNA
|

778119 | 778193 | + | 75 | 118578449 | Ppro_R0012 | - | 05 Gln tRNA
|

1067193 | 1067269 | - | 77 | 118578449 | Ppro_R0014 | - | 16 Met tRNA
|

1175857 | 1175933 | - | 77 | 118578449 | Ppro_R0015 | - | 11 Arg tRNA
|

1233155 | 1233231 | - | 77 | 118578449 | Ppro_R0017 | - | 06 Asp tRNA
|

1233253 | 1233328 | - | 76 | 118578449 | Ppro_R0018 | - | 13 Val tRNA
|

1233339 | 1233415 | - | 77 | 118578449 | Ppro_R0019 | - | 06 Asp tRNA
|

1237262 | 1237346 | - | 85 | 118578449 | Ppro_R0020 | - | 15 Leu tRNA
|

1352684 | 1354234 | + | 1551 | 118578449 | Ppro_R0021 | - | 16S ribosomal RNA |

1354380 | 1354456 | + | 77 | 118578449 | Ppro_R0022 | - | 14 Ile tRNA
|

1354479 | 1354554 | + | 76 | 118578449 | Ppro_R0023 | - | 02 Ala tRNA
|

1355114 | 1357669 | + | 2556 | 118578449 | Ppro_R0024 | - | 23S ribosomal RNA |

1357807 | 1357923 | + | 117 | 118578449 | Ppro_R0025 | - | 5S ribosomal RNA |

1386949 | 1387299 | + | 351 | 118578449 | Ppro_R0026 | - | |

1399089 | 1399164 | - | 76 | 118578449 | Ppro_R0027 | - | 12 Thr tRNA
|

1409531 | 1409606 | - | 76 | 118578449 | Ppro_R0028 | - | 12 Thr tRNA
|

1433913 | 1433999 | + | 87 | 118578449 | Ppro_R0029 | - | 15 Leu tRNA
|

1444993 | 1445069 | + | 77 | 118578449 | Ppro_R0030 | - | 03 Pro tRNA
|

1526541 | 1526615 | + | 75 | 118578449 | Ppro_R0031 | - | 13 Val tRNA
|

1803507 | 1805057 | + | 1551 | 118578449 | Ppro_R0032 | - | 16S ribosomal RNA |

1805203 | 1805279 | + | 77 | 118578449 | Ppro_R0033 | - | 14 Ile tRNA
|

1805302 | 1805377 | + | 76 | 118578449 | Ppro_R0034 | - | 02 Ala tRNA
|

1805937 | 1808492 | + | 2556 | 118578449 | Ppro_R0035 | - | 23S ribosomal RNA |

1808630 | 1808746 | + | 117 | 118578449 | Ppro_R0036 | - | 5S ribosomal RNA |

1823398 | 1823484 | + | 87 | 118578449 | Ppro_R0037 | - | 15 Leu tRNA
|

1830984 | 1831059 | - | 76 | 118578449 | Ppro_R0038 | - | 09 His tRNA
|

1930956 | 1931029 | - | 74 | 118578449 | Ppro_R0039 | - | 05 Gln tRNA
|

2071223 | 2071310 | - | 88 | 118578449 | Ppro_R0040 | - | 08 Ser tRNA
|

2304326 | 2304411 | - | 86 | 118578449 | Ppro_R0041 | - | 15 Leu tRNA
|

2304533 | 2304608 | + | 76 | 118578449 | Ppro_R0042 | - | 02 Ala tRNA
|

2365165 | 2365241 | + | 77 | 118578449 | Ppro_R0043 | - | 11 Arg tRNA
|

2483721 | 2483797 | - | 77 | 118578449 | Ppro_R0044 | - | 03 Pro tRNA
|

2491448 | 2491522 | - | 75 | 118578449 | Ppro_R0045 | - | 13 Val tRNA
|

2548510 | 2548586 | + | 77 | 118578449 | Ppro_R0046 | - | 11 Arg tRNA
|

2593266 | 2593340 | - | 75 | 118578449 | Ppro_R0047 | - | 01 Gly tRNA
|

2801748 | 2801822 | - | 75 | 118578449 | Ppro_R0048 | - | 01 Gly tRNA
|

2882101 | 2882177 | + | 77 | 118578449 | Ppro_R0049 | - | 16 Met tRNA
|

2882748 | 2882864 | - | 117 | 118578449 | Ppro_R0050 | - | 5S ribosomal RNA |

2883002 | 2885557 | - | 2556 | 118578449 | Ppro_R0051 | - | 23S ribosomal RNA |

2886117 | 2886192 | - | 76 | 118578449 | Ppro_R0052 | - | 02 Ala tRNA
|

2886215 | 2886291 | - | 77 | 118578449 | Ppro_R0053 | - | 14 Ile tRNA
|

2886437 | 2887987 | - | 1551 | 118578449 | Ppro_R0054 | - | 16S ribosomal RNA |

2898043 | 2898119 | - | 77 | 118578449 | Ppro_R0055 | - | 11 Arg tRNA
|

2907772 | 2907846 | + | 75 | 118578449 | Ppro_R0056 | - | 19 Cys tRNA
|

2999897 | 2999973 | + | 77 | 118578449 | Ppro_R0057 | - | 11 Arg tRNA
|

3213600 | 3213692 | - | 93 | 118578449 | Ppro_R0058 | - | 08 Ser tRNA
|

3216305 | 3216380 | + | 76 | 118578449 | Ppro_R0059 | - | 17 Phe tRNA
|

3331023 | 3331139 | - | 117 | 118578449 | Ppro_R0060 | - | 5S ribosomal RNA |

3331277 | 3333832 | - | 2556 | 118578449 | Ppro_R0061 | - | 23S ribosomal RNA |

3334392 | 3334467 | - | 76 | 118578449 | Ppro_R0062 | - | 02 Ala tRNA
|

3334490 | 3334566 | - | 77 | 118578449 | Ppro_R0063 | - | 14 Ile tRNA
|

3334711 | 3336261 | - | 1551 | 118578449 | Ppro_R0064 | - | 16S ribosomal RNA |

3386631 | 3386706 | + | 76 | 118578449 | Ppro_R0065 | - | 10 Lys tRNA
|

3386761 | 3386836 | + | 76 | 118578449 | Ppro_R0066 | - | 10 Lys tRNA
|

3386959 | 3387036 | + | 78 | 118578449 | Ppro_R0067 | - | 04 Glu tRNA
|

3435422 | 3435497 | - | 76 | 118578449 | Ppro_R0068 | - | 07 Asn tRNA
|

3639885 | 3639961 | - | 77 | 118578449 | Ppro_R0070 | - | 16 Met tRNA
|

3929479 | 3929555 | - | 77 | 118578449 | Ppro_R0071 | - | 03 Pro tRNA
|