Материалы:NC 008526

LOCUS NC_008526 2895264 bp DNA circular BCT 14-AUG-2007 DEFINITION Lactobacillus casei ATCC 334, complete genome. ACCESSION NC_008526 VERSION NC_008526.1 GI:116493574 KEYWORDS . SOURCE Lactobacillus casei ATCC 334 ORGANISM Lactobacillus casei ATCC 334 Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. REFERENCE 1 (bases 1 to 2895264) AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B., Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K., Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J., Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B., Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E., Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D., Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D., Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P., Kozyavkin,S., Weimer,B. and Mills,D. TITLE Comparative genomics of the lactic acid bacteria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006) PUBMED 17030793 REFERENCE 2 (bases 1 to 2895264) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2895264) AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S., Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S., Makarova,K., Koonin,E., Mills,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc. TITLE Direct Submission JOURNAL Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000423. URL -- http://www.jgi.doe.gov JGI Project ID: 2662185 Source DNA and bacteria available from Jeffery R. Broadbent (broadbnt@cc.usu.edu) Bacteria also available from ATCC: ATCC 334 Contacts: Jeffery R. Broadbent (broadbnt@cc.usu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by Kira Makarova and Eugene Koonin Finishing done by Fidelity Systems Inc. (Gaithersburg) URL -- http://www.fidelitysystems.com Project Information available at: http://genome.jgi-psf.org/mic_home.html The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

259505 | 261078 | + | 1574 | 116493574 | LSEI_r0258 | - | 16S ribosomal RNA |

261295 | 264214 | + | 2920 | 116493574 | LSEI_r0259 | - | 23S ribosomal RNA |

264412 | 264531 | + | 120 | 116493574 | LSEI_r0260 | - | 5S ribosomal RNA |

501060 | 501131 | + | 72 | 116493574 | LSEI_t0485 | - | 11 Arg tRNA
|

722753 | 722825 | - | 73 | 116493574 | LSEI_t0719 | - | 02 Ala tRNA
|

722847 | 722919 | - | 73 | 116493574 | LSEI_t0720 | - | 02 Ala tRNA
|

823774 | 825347 | + | 1574 | 116493574 | LSEI_r0829 | - | 16S ribosomal RNA |

825564 | 828483 | + | 2920 | 116493574 | LSEI_r0830 | - | 23S ribosomal RNA |

828679 | 828798 | + | 120 | 116493574 | LSEI_r0831 | - | 5S ribosomal RNA |

828803 | 828875 | + | 73 | 116493574 | LSEI_t0832 | - | 13 Val tRNA
|

828878 | 828950 | + | 73 | 116493574 | LSEI_t0833 | - | 10 Lys tRNA
|

828992 | 829064 | + | 73 | 116493574 | LSEI_t0834 | - | 12 Thr tRNA
|

829098 | 829169 | + | 72 | 116493574 | LSEI_t0835 | - | 01 Gly tRNA
|

829230 | 829303 | + | 74 | 116493574 | LSEI_t0836 | - | 11 Arg tRNA
|

829308 | 829381 | + | 74 | 116493574 | LSEI_t0837 | - | 03 Pro tRNA
|

829408 | 829481 | + | 74 | 116493574 | LSEI_t0838 | - | 16 Met tRNA
|

829490 | 829563 | + | 74 | 116493574 | LSEI_t0839 | - | 16 Met tRNA
|

829612 | 829685 | + | 74 | 116493574 | LSEI_t0840 | - | 16 Met tRNA
|

829693 | 829766 | + | 74 | 116493574 | LSEI_t0841 | - | 06 Asp tRNA
|

829772 | 829844 | + | 73 | 116493574 | LSEI_t0842 | - | 17 Phe tRNA
|

829864 | 829934 | + | 71 | 116493574 | LSEI_t0843 | - | 01 Gly tRNA
|

829949 | 830022 | + | 74 | 116493574 | LSEI_t0844 | - | 14 Ile tRNA
|

830052 | 830139 | + | 88 | 116493574 | LSEI_t0845 | - | 08 Ser tRNA
|

830144 | 830215 | + | 72 | 116493574 | LSEI_t0846 | - | 04 Glu tRNA
|

830225 | 830316 | + | 92 | 116493574 | LSEI_t0847 | - | 08 Ser tRNA
|

830327 | 830400 | + | 74 | 116493574 | LSEI_t0848 | - | 16 Met tRNA
|

830408 | 830481 | + | 74 | 116493574 | LSEI_t0849 | - | 06 Asp tRNA
|

830525 | 830597 | + | 73 | 116493574 | LSEI_t0850 | - | 17 Phe tRNA
|

830602 | 830682 | + | 81 | 116493574 | LSEI_t0851 | - | 18 Tyr tRNA
|

830689 | 830759 | + | 71 | 116493574 | LSEI_t0852 | - | 20 Trp tRNA
|

830771 | 830843 | + | 73 | 116493574 | LSEI_t0853 | - | 09 His tRNA
|

830852 | 830923 | + | 72 | 116493574 | LSEI_t0854 | - | 05 Gln tRNA
|

830966 | 831036 | + | 71 | 116493574 | LSEI_t0855 | - | 19 Cys tRNA
|

831083 | 831169 | + | 87 | 116493574 | LSEI_t0856 | - | 15 Leu tRNA
|

845524 | 847097 | + | 1574 | 116493574 | LSEI_r0870 | - | 16S ribosomal RNA |

847314 | 850233 | + | 2920 | 116493574 | LSEI_r0871 | - | 23S ribosomal RNA |

850429 | 850548 | + | 120 | 116493574 | LSEI_r0872 | - | 5S ribosomal RNA |

850554 | 850626 | + | 73 | 116493574 | LSEI_t0873 | - | 07 Asn tRNA
|

850635 | 850724 | + | 90 | 116493574 | LSEI_t0874 | - | 08 Ser tRNA
|

850979 | 851051 | + | 73 | 116493574 | LSEI_t0875 | - | 13 Val tRNA
|

866026 | 866109 | + | 84 | 116493574 | LSEI_t0890 | - | 15 Leu tRNA
|

946267 | 946338 | + | 72 | 116493574 | LSEI_t0964 | - | 11 Arg tRNA
|

1024479 | 1024842 | - | 364 | 116493574 | LSEI_s1039 | - | tmRNA |

1064149 | 1064222 | + | 74 | 116493574 | LSEI_t1079 | - | 11 Arg tRNA
|

1122160 | 1122231 | + | 72 | 116493574 | LSEI_t1137 | - | 04 Glu tRNA
|

1127856 | 1127926 | + | 71 | 116493574 | LSEI_t1143 | - | 05 Gln tRNA
|

1471442 | 1471768 | - | 327 | 116493574 | LSEI_r1477 | - | RNA_RNaseP_classB |

1545912 | 1545999 | + | 88 | 116493574 | LSEI_t1551 | - | 08 Ser tRNA
|

1644325 | 1644398 | - | 74 | 116493574 | LSEI_t1650 | - | 11 Arg tRNA
|

1724380 | 1724450 | - | 71 | 116493574 | LSEI_t1729 | - | 01 Gly tRNA
|

1787305 | 1787393 | + | 89 | 116493574 | LSEI_t1794 | - | 15 Leu tRNA
|

1806618 | 1806698 | - | 81 | 116493574 | LSEI_t1811 | - | 18 Tyr tRNA
|

1823054 | 1823126 | - | 73 | 116493574 | LSEI_t1825 | - | 12 Thr tRNA
|

1823131 | 1823202 | - | 72 | 116493574 | LSEI_t1826 | - | 04 Glu tRNA
|

1825412 | 1825484 | - | 73 | 116493574 | LSEI_t1830 | - | 07 Asn tRNA
|

1825492 | 1825611 | - | 120 | 116493574 | LSEI_r1831 | - | 5S ribosomal RNA |

1825733 | 1828652 | - | 2920 | 116493574 | LSEI_r1832 | - | 23S ribosomal RNA |

1828811 | 1828883 | - | 73 | 116493574 | LSEI_t1833 | - | 02 Ala tRNA
|

1828915 | 1828991 | - | 77 | 116493574 | LSEI_t1834 | - | 14 Ile tRNA
|

1829077 | 1830650 | - | 1574 | 116493574 | LSEI_r1835 | - | 16S ribosomal RNA |

2217604 | 2217675 | - | 72 | 116493574 | LSEI_t2224 | - | 07 Asn tRNA
|

2499939 | 2500012 | - | 74 | 116493574 | LSEI_t2519 | - | 03 Pro tRNA
|

2500017 | 2500088 | - | 72 | 116493574 | LSEI_t2520 | - | 01 Gly tRNA
|

2500135 | 2500211 | - | 77 | 116493574 | LSEI_t2521 | - | 11 Arg tRNA
|

2500223 | 2500308 | - | 86 | 116493574 | LSEI_t2522 | - | 15 Leu tRNA
|

2500320 | 2500391 | - | 72 | 116493574 | LSEI_t2523 | - | 01 Gly tRNA
|

2500467 | 2500549 | - | 83 | 116493574 | LSEI_t2524 | - | 15 Leu tRNA
|

2500567 | 2500639 | - | 73 | 116493574 | LSEI_t2525 | - | 10 Lys tRNA
|

2500642 | 2500714 | - | 73 | 116493574 | LSEI_t2526 | - | 13 Val tRNA
|

2500721 | 2500840 | - | 120 | 116493574 | LSEI_r2527 | - | 5S ribosomal RNA |

2501036 | 2503955 | - | 2920 | 116493574 | LSEI_r2528 | - | 23S ribosomal RNA |

2504114 | 2504186 | - | 73 | 116493574 | LSEI_t2529 | - | 02 Ala tRNA
|

2504218 | 2504294 | - | 77 | 116493574 | LSEI_t2530 | - | 14 Ile tRNA
|

2504380 | 2505953 | - | 1574 | 116493574 | LSEI_r2531 | - | 16S ribosomal RNA |

2620404 | 2620476 | - | 73 | 116493574 | LSEI_t2634 | - | 12 Thr tRNA
|

2861966 | 2862038 | - | 73 | 116493574 | LSEI_t2881 | - | 10 Lys tRNA
|