Материалы:NC 009784

LOCUS NC_009784 2204018 bp DNA circular BCT 07-SEP-2007 DEFINITION Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. ACCESSION NC_009784 VERSION NC_009784.1 GI:156975952 KEYWORDS . SOURCE Vibrio harveyi ATCC BAA-1116 ORGANISM Vibrio harveyi ATCC BAA-1116 Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. REFERENCE 1 (bases 1 to 2204018) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-SEP-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 2 (bases 1 to 2204018) AUTHORS Bassler,B., Clifton,S.W., Fulton,L., Delehaunty,K., Fronick,C., Harrison,M., Markivic,C., Fulton,R., Tin-Wollam,A.-M., Shah,N., Pepin,K., Nash,W., Thiruvilangam,P., Bhonagiri,V., Waters,C., Tu,K.C., Irgon,J. and Wilson,R.K. CONSRTM The Vibrio harveyi Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (16-AUG-2007) Genetics, Genome Sequencing Center, 4444 Forest Park Parkway, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000790. Vibrio harveyi belongs to the group of bioluminescent bacteria that 'glow in the dark,' just as the commonly known firefly. Based on their 16S ribosomal RNA (rRNA) classification, they belong to the group of bacteria known as Proteobacteria, which is further sub-divided into five groups, including the gamma proteobacteria. This group includes many families, one of which is the Vibrionaceae (bioluminescent bacteria). One of the Vibrios is a human pathogen and causes cholera. Vibrio harveyi can be found globally in marine environments, either in a free-living state or in symbiosis with marine life. The sequenced strain is BB120, ATCC BAA-1116 http://www.atcc.org/common/catalog/numSearch/numResults.cfm Sequence/Assembly The genome of Vibrio harveyi was sequenced to 8X coverage using a combination of plasmid and fosmid end sequences. Additional 454 sequence reads bring the present coverage to 10.8X. Assembly was performed using the PCAP software (Genome Res. 13(9):2164-70 2003). The genome has undergone automated sequence improvement (pre-finishing) followed by manual finishing, and automated annotation. The National Science Foundation (NSF) is providing funding for the complete sequence of the Vibrio harveyi genome. Annotation Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. RNA genes were determined using tRNAscan-SE 1.23 or Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs.For questions regarding this assembly or project, please visit the Vibrio harveyi genome page (http://genome.wustl.edu/genome.cgi?GENOME=Vibrio%20harveyi) and choose the designated contact person. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

111193 | 111301 | + | 109 | 156975952 | VIBHAR_04846 | - | Qrr RNA |

555291 | 555399 | - | 109 | 156975952 | VIBHAR_05322 | - | Qrr RNA |

674548 | 674635 | - | 88 | 156975952 | VIBHAR_05459 | - | 08 Ser tRNA
|

882885 | 882955 | + | 71 | 156975952 | VIBHAR_05672 | - | 19 Cys tRNA
|

886895 | 886978 | + | 84 | 156975952 | VIBHAR_05676 | - | 15 Leu tRNA
|

887079 | 887151 | + | 73 | 156975952 | VIBHAR_05677 | - | 01 Gly tRNA
|

887160 | 887230 | + | 71 | 156975952 | VIBHAR_05678 | - | 19 Cys tRNA
|

890715 | 890798 | + | 84 | 156975952 | VIBHAR_05682 | - | 15 Leu tRNA
|

890855 | 890925 | + | 71 | 156975952 | VIBHAR_05683 | - | 19 Cys tRNA
|

891110 | 891180 | + | 71 | 156975952 | VIBHAR_05684 | - | 19 Cys tRNA
|

1080963 | 1081069 | - | 107 | 156975952 | VIBHAR_05886 | - | Qrr RNA |

1336060 | 1336131 | + | 72 | 156975952 | VIBHAR_06159 | - | 01 Gly tRNA
|

1833376 | 1833484 | - | 109 | 156975952 | VIBHAR_06697 | - | Qrr RNA |

1842706 | 1842786 | + | 81 | 156975952 | VIBHAR_06707 | - | 15 Leu tRNA
|

1864333 | 1864645 | + | 313 | 156975952 | VIBHAR_06731 | - | CsrB/RsmB RNA family |

1921624 | 1921695 | + | 72 | 156975952 | VIBHAR_06802 | - | 01 Gly tRNA
|

1939217 | 1939304 | - | 88 | 156975952 | VIBHAR_06826 | - | 08 Ser tRNA
|

1939395 | 1939511 | - | 117 | 156975952 | VIBHAR_06827 | - | 5S ribosomal RNA |

1939607 | 1942491 | + | 2885 | 156975952 | VIBHAR_07134 | - | 23S ribosomal RNA |

1942813 | 1942885 | - | 73 | 156975952 | VIBHAR_06828 | - | 13 Val tRNA
|

1942924 | 1942996 | - | 73 | 156975952 | VIBHAR_06829 | - | 02 Ala tRNA
|

1943024 | 1943096 | - | 73 | 156975952 | VIBHAR_06830 | - | 10 Lys tRNA
|

1943102 | 1943174 | - | 73 | 156975952 | VIBHAR_06831 | - | 04 Glu tRNA
|

1944284 | 1944825 | - | 542 | 156975952 | VIBHAR_06832 | - | small subunit ribosomal RNA |