Материалы:NC 008150

LOCUS NC_008150 4702289 bp DNA circular BCT 08-AUG-2007 DEFINITION Yersinia pestis Antiqua, complete genome. ACCESSION NC_008150 VERSION NC_008150.1 GI:108805998 KEYWORDS . SOURCE Yersinia pestis Antiqua ORGANISM Yersinia pestis Antiqua Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia. REFERENCE 1 (bases 1 to 4702289) AUTHORS Chain,P.S., Hu,P., Malfatti,S.A., Radnedge,L., Larimer,F., Vergez,L.M., Worsham,P., Chu,M.C. and Andersen,G.L. TITLE Complete Genome Sequence of Yersinia pestis Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen JOURNAL J. Bacteriol. 188 (12), 4453-4463 (2006) PUBMED 16740952 REFERENCE 2 (bases 1 to 4702289) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P., Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F., Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G.L. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Yersinia pestis Antiqua JOURNAL Unpublished REFERENCE 3 (bases 1 to 4702289) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-JUN-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 4702289) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P., Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F., Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G.L. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (06-APR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000308. URL -- http://www.jgi.doe.gov JGI Project ID: 2773254 Source DNA and bacteria available from Gary Andersen (glandersen@lbl.gov) Contacts: Gary Andersen (glandersen@lbl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by JGI-ORNL Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

14226 | 15769 | + | 1544 | 108805998 | YPA_r001 | - | 16S RNA |

15905 | 15980 | + | 76 | 108805998 | YPA_r002 | - | 04 Glu tRNA
|

16233 | 19139 | + | 2907 | 108805998 | YPA_r003 | - | 23S RNA |

19247 | 19366 | + | 120 | 108805998 | YPA_r004 | - | 5S ribosomal RNA |

19380 | 19455 | + | 76 | 108805998 | YPA_r005 | - | 12 Thr tRNA
|

19493 | 19613 | + | 121 | 108805998 | YPA_r005a | - | 5S ribosomal RNA |

64926 | 65002 | - | 77 | 108805998 | YPA_r006 | - | 16 Met tRNA
|

65063 | 65149 | - | 87 | 108805998 | YPA_r007 | - | 15 Leu tRNA
|

132736 | 132996 | + | 261 | 108805998 | YPA_r008 | - | cobalamin riboswitch |

136226 | 137769 | + | 1544 | 108805998 | YPA_r009 | - | 16S ribosomal RNA |

137905 | 137980 | + | 76 | 108805998 | YPA_r010 | - | 04 Glu tRNA
|

138233 | 141139 | + | 2907 | 108805998 | YPA_r011 | - | 23S RNA |

141247 | 141366 | + | 120 | 108805998 | YPA_r012 | - | 5S ribosomal RNA |

141490 | 141566 | + | 77 | 108805998 | YPA_r013 | - | 06 Asp tRNA
|

141575 | 141650 | + | 76 | 108805998 | YPA_r014 | - | 20 Trp tRNA
|

199710 | 199786 | + | 77 | 108805998 | YPA_r015 | - | 11 Arg tRNA
|

199870 | 199945 | + | 76 | 108805998 | YPA_r016 | - | 09 His tRNA
|

199962 | 200048 | + | 87 | 108805998 | YPA_r017 | - | 15 Leu tRNA
|

200124 | 200200 | + | 77 | 108805998 | YPA_r018 | - | 03 Pro tRNA
|

354159 | 354234 | - | 76 | 108805998 | YPA_r019 | - | 17 Phe tRNA
|

416678 | 416859 | - | 182 | 108805998 | YPA_r020 | - | 6S RNA |

447302 | 447375 | + | 74 | 108805998 | YPA_r021 | - | 01 Gly tRNA
|

578891 | 578967 | - | 77 | 108805998 | YPA_r022 | - | 16 Met tRNA
|

579091 | 579167 | - | 77 | 108805998 | YPA_r023 | - | 16 Met tRNA
|

593115 | 593396 | + | 282 | 108805998 | YPA_r024 | - | regulatory RNA csrB |

634214 | 635757 | + | 1544 | 108805998 | YPA_r025 | - | 16S ribosomal RNA |

635893 | 635968 | + | 76 | 108805998 | YPA_r026 | - | 04 Glu tRNA
|

636221 | 639126 | + | 2906 | 108805998 | YPA_r027 | - | 23S ribosomal RNA |

639234 | 639353 | + | 120 | 108805998 | YPA_r028 | - | 5S ribosomal RNA |

639477 | 639553 | + | 77 | 108805998 | YPA_r029 | - | 06 Asp tRNA
|

646844 | 646920 | + | 77 | 108805998 | YPA_r030 | - | 06 Asp tRNA
|

662324 | 662687 | - | 364 | 108805998 | YPA_r031 | - | tmRNA |

689784 | 689859 | + | 76 | 108805998 | YPA_r032 | - | 10 Lys tRNA
|

689887 | 689962 | + | 76 | 108805998 | YPA_r033 | - | 10 Lys tRNA
|

689991 | 690060 | + | 70 | 108805998 | YPA_r034 | - | Xaa tRNA |

851568 | 851655 | + | 88 | 108805998 | YPA_r035 | - | 08 Ser tRNA
|

1009502 | 1009577 | - | 76 | 108805998 | YPA_r036 | - | 07 Asn tRNA
|

1084489 | 1084623 | - | 135 | 108805998 | YPA_r037 | - | antisense RNA affecting ompF expression |

1087076 | 1087163 | + | 88 | 108805998 | YPA_r038 | - | 08 Ser tRNA
|

1087169 | 1087244 | + | 76 | 108805998 | YPA_r039 | - | 12 Thr tRNA
|

1121252 | 1121328 | - | 77 | 108805998 | YPA_r040 | - | 03 Pro tRNA
|

1258121 | 1258196 | - | 76 | 108805998 | YPA_r041 | - | 07 Asn tRNA
|

1313737 | 1313986 | - | 250 | 108805998 | YPA_r042 | - | SraC_RyeA RNA |

1313847 | 1313942 | + | 96 | 108805998 | YPA_r043 | - | RyeB RNA |

1391586 | 1391661 | + | 76 | 108805998 | YPA_r044 | - | 10 Lys tRNA
|

1398110 | 1398185 | + | 76 | 108805998 | YPA_r045 | - | 01 Gly tRNA
|

1398238 | 1398311 | + | 74 | 108805998 | YPA_r046 | - | 19 Cys tRNA
|

1398322 | 1398407 | + | 86 | 108805998 | YPA_r047 | - | 15 Leu tRNA
|

1454366 | 1454441 | - | 76 | 108805998 | YPA_r048 | - | 07 Asn tRNA
|

1583212 | 1583301 | - | 90 | 108805998 | YPA_r049 | - | 08 Ser tRNA
|

1591622 | 1591711 | - | 90 | 108805998 | YPA_r050 | - | 08 Ser tRNA
|

1712729 | 1712813 | - | 85 | 108805998 | YPA_r051 | - | 18 Tyr tRNA
|

1950178 | 1950254 | + | 77 | 108805998 | YPA_r052 | - | 13 Val tRNA
|

1950314 | 1950390 | + | 77 | 108805998 | YPA_r053 | - | 13 Val tRNA
|

2366033 | 2366107 | - | 75 | 108805998 | YPA_r055 | - | 11 Arg tRNA
|

2437931 | 2438006 | - | 76 | 108805998 | YPA_r056 | - | 10 Lys tRNA
|

2438206 | 2438281 | - | 76 | 108805998 | YPA_r057 | - | 13 Val tRNA
|

2438318 | 2438393 | - | 76 | 108805998 | YPA_r058 | - | 13 Val tRNA
|

2441025 | 2441100 | + | 76 | 108805998 | YPA_r059 | - | 02 Ala tRNA
|

2643555 | 2643719 | + | 165 | 108805998 | YPA_r060 | - | tke1 RNA |

2762307 | 2762383 | + | 77 | 108805998 | YPA_r061 | - | 16 Met tRNA
|

2762391 | 2762475 | + | 85 | 108805998 | YPA_r062 | - | 15 Leu tRNA
|

2762505 | 2762579 | + | 75 | 108805998 | YPA_r063 | - | 05 Gln tRNA
|

2762663 | 2762737 | + | 75 | 108805998 | YPA_r064 | - | 05 Gln tRNA
|

2762770 | 2762846 | + | 77 | 108805998 | YPA_r065 | - | 16 Met tRNA
|

2762852 | 2762926 | + | 75 | 108805998 | YPA_r066 | - | 05 Gln tRNA
|

2857948 | 2858024 | - | 77 | 108805998 | YPA_r067 | - | 11 Arg tRNA
|

2930127 | 2930246 | - | 120 | 108805998 | YPA_r068 | - | SRP RNA |

3080429 | 3080548 | - | 120 | 108805998 | YPA_r069 | - | 5S ribosomal RNA |

3080656 | 3083562 | - | 2907 | 108805998 | YPA_r070 | - | 23S RNA |

3083781 | 3083856 | - | 76 | 108805998 | YPA_r071 | - | 02 Ala tRNA
|

3083908 | 3083984 | - | 77 | 108805998 | YPA_r072 | - | 14 Ile tRNA
|

3084086 | 3085629 | - | 1544 | 108805998 | YPA_r073 | - | 16S RNA |

3275924 | 3276008 | - | 85 | 108805998 | YPA_r074 | - | 15 Leu tRNA
|

3333110 | 3333283 | + | 174 | 108805998 | YPA_r075 | - | SraG RNA |

3475580 | 3475769 | - | 190 | 108805998 | YPA_r076 | - | FMN riboswitch |

3494424 | 3494500 | + | 77 | 108805998 | YPA_r077 | - | 16 Met tRNA
|

3829001 | 3829120 | - | 120 | 108805998 | YPA_r078 | - | 5S ribosomal RNA |

3829228 | 3832134 | - | 2907 | 108805998 | YPA_r079 | - | 23S RNA |

3832353 | 3832428 | - | 76 | 108805998 | YPA_r080 | - | 02 Ala tRNA
|

3832480 | 3832556 | - | 77 | 108805998 | YPA_r081 | - | 14 Ile tRNA
|

3832667 | 3834210 | - | 1544 | 108805998 | YPA_r082 | - | 16S RNA |

3931783 | 3932037 | - | 255 | 108805998 | YPA_r083 | - | regulatory RNA CsrC |

3933887 | 3933993 | - | 107 | 108805998 | YPA_r084 | - | Spot 42 RNA |

3942466 | 3942584 | - | 119 | 108805998 | YPA_r085 | - | 5S ribosomal RNA |

3942693 | 3945599 | - | 2907 | 108805998 | YPA_r086 | - | 23S RNA |

3945852 | 3945927 | - | 76 | 108805998 | YPA_r087 | - | 04 Glu tRNA
|

3946064 | 3947607 | - | 1544 | 108805998 | YPA_r088 | - | 16S RNA |

4032348 | 4032467 | - | 120 | 108805998 | YPA_r089 | - | 5S ribosomal RNA |

4032575 | 4035482 | - | 2908 | 108805998 | YPA_r090 | - | 23S RNA |

4035701 | 4035776 | - | 76 | 108805998 | YPA_r091 | - | 02 Ala tRNA
|

4035828 | 4035904 | - | 77 | 108805998 | YPA_r092 | - | 14 Ile tRNA
|

4036006 | 4037551 | - | 1546 | 108805998 | YPA_r093 | - | 16S RNA |

4068174 | 4068249 | - | 76 | 108805998 | YPA_r094 | - | 12 Thr tRNA
|

4068256 | 4068330 | - | 75 | 108805998 | YPA_r095 | - | 01 Gly tRNA
|

4068480 | 4068564 | - | 85 | 108805998 | YPA_r096 | - | 18 Tyr tRNA
|

4068583 | 4068658 | - | 76 | 108805998 | YPA_r097 | - | 12 Thr tRNA
|

4212438 | 4212812 | + | 375 | 108805998 | YPA_r098 | - | RNA component of RNaseP |

4318870 | 4318946 | - | 77 | 108805998 | YPA_r099 | - | 03 Pro tRNA
|

4344635 | 4344721 | + | 87 | 108805998 | YPA_r100 | - | 15 Leu tRNA
|

4412556 | 4412631 | - | 76 | 108805998 | YPA_r101 | - | 01 Gly tRNA
|

4412723 | 4412798 | - | 76 | 108805998 | YPA_r102 | - | 01 Gly tRNA
|

4442682 | 4442757 | + | 76 | 108805998 | YPA_r103 | - | 17 Phe tRNA
|

4643204 | 4643294 | - | 91 | 108805998 | YPA_r104 | - | Sec tRNA |