Материалы:NC 009524

LOCUS NC_009524 2978976 bp DNA circular BCT 14-AUG-2007 DEFINITION Psychrobacter sp. PRwf-1, complete genome. ACCESSION NC_009524 VERSION NC_009524.1 GI:148651817 KEYWORDS . SOURCE Psychrobacter sp. PRwf-1 ORGANISM Psychrobacter sp. PRwf-1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter. REFERENCE 1 (bases 1 to 2978976) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Psychrobacter sp. PEwf-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2978976) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tiedjej,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (24-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA REFERENCE 3 (bases 1 to 2978976) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (03-DEC-2003) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000713. URL -- http://www.jgi.doe.gov JGI Project ID: 4001101 Source DNA and bacteria available from James Tiedje (tiedjej@pilot.msu.edu) Contacts: James Tiedje (tiedjej@pilot.msu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

72770 | 72845 | - | 76 | 148651817 | PsycPRwf_R0001 | - | 17 Phe tRNA
|

154137 | 154212 | - | 76 | 148651817 | PsycPRwf_R0002 | - | 04 Glu tRNA
|

154345 | 154420 | - | 76 | 148651817 | PsycPRwf_R0003 | - | 02 Ala tRNA
|

183117 | 183201 | + | 85 | 148651817 | PsycPRwf_R0004 | - | 15 Leu tRNA
|

183580 | 183656 | + | 77 | 148651817 | PsycPRwf_R0005 | - | 16 Met tRNA
|

250123 | 250198 | + | 76 | 148651817 | PsycPRwf_R0006 | - | 01 Gly tRNA
|

250335 | 250410 | + | 76 | 148651817 | PsycPRwf_R0007 | - | 01 Gly tRNA
|

409432 | 409521 | + | 90 | 148651817 | PsycPRwf_R0008 | - | 08 Ser tRNA
|

409661 | 409737 | + | 77 | 148651817 | PsycPRwf_R0009 | - | 11 Arg tRNA
|

444879 | 445195 | + | 317 | 148651817 | PsycPRwf_R0010 | - | RNA component of RNaseP |

445350 | 445426 | + | 77 | 148651817 | PsycPRwf_R0011 | - | 16 Met tRNA
|

512302 | 512378 | - | 77 | 148651817 | PsycPRwf_R0012 | - | 03 Pro tRNA
|

727348 | 727424 | - | 77 | 148651817 | PsycPRwf_R0013 | - | 11 Arg tRNA
|

776635 | 778181 | + | 1547 | 148651817 | PsycPRwf_R0014 | - | 16S ribosomal RNA |

778231 | 778307 | + | 77 | 148651817 | PsycPRwf_R0015 | - | 14 Ile tRNA
|

778318 | 778393 | + | 76 | 148651817 | PsycPRwf_R0016 | - | 02 Ala tRNA
|

778714 | 781576 | + | 2863 | 148651817 | PsycPRwf_R0017 | - | 23S ribosomal RNA |

781742 | 781859 | + | 118 | 148651817 | PsycPRwf_R0018 | - | 5S ribosomal RNA |

828410 | 828486 | + | 77 | 148651817 | PsycPRwf_R0019 | - | 13 Val tRNA
|

910864 | 910939 | + | 76 | 148651817 | PsycPRwf_R0020 | - | 13 Val tRNA
|

910978 | 911054 | + | 77 | 148651817 | PsycPRwf_R0021 | - | 06 Asp tRNA
|

1190821 | 1190897 | - | 77 | 148651817 | PsycPRwf_R0022 | - | 06 Asp tRNA
|

1190938 | 1191013 | - | 76 | 148651817 | PsycPRwf_R0023 | - | 13 Val tRNA
|

1494916 | 1494991 | + | 76 | 148651817 | PsycPRwf_R0024 | - | 11 Arg tRNA
|

1566834 | 1566910 | + | 77 | 148651817 | PsycPRwf_R0025 | - | 16 Met tRNA
|

1796175 | 1796250 | + | 76 | 148651817 | PsycPRwf_R0026 | - | 13 Val tRNA
|

1796289 | 1796365 | + | 77 | 148651817 | PsycPRwf_R0027 | - | 06 Asp tRNA
|

1821365 | 1821440 | + | 76 | 148651817 | PsycPRwf_R0028 | - | 13 Val tRNA
|

1821497 | 1821573 | + | 77 | 148651817 | PsycPRwf_R0029 | - | 06 Asp tRNA
|

1910150 | 1910225 | + | 76 | 148651817 | PsycPRwf_R0030 | - | 07 Asn tRNA
|

1910585 | 1910660 | + | 76 | 148651817 | PsycPRwf_R0031 | - | 07 Asn tRNA
|

1911466 | 1911556 | + | 91 | 148651817 | PsycPRwf_R0032 | - | 08 Ser tRNA
|

1911745 | 1911835 | + | 91 | 148651817 | PsycPRwf_R0033 | - | 08 Ser tRNA
|

2029442 | 2029796 | + | 355 | 148651817 | PsycPRwf_R0034 | - | tmRNA |

2031814 | 2031927 | - | 114 | 148651817 | PsycPRwf_R0035 | - | SRP RNA; RNA component of signal recognition particle |

2055921 | 2055996 | + | 76 | 148651817 | PsycPRwf_R0036 | - | 04 Glu tRNA
|

2056241 | 2056316 | + | 76 | 148651817 | PsycPRwf_R0037 | - | 04 Glu tRNA
|

2241199 | 2241283 | + | 85 | 148651817 | PsycPRwf_R0038 | - | 15 Leu tRNA
|

2241558 | 2241642 | + | 85 | 148651817 | PsycPRwf_R0039 | - | 15 Leu tRNA
|

2253108 | 2253181 | + | 74 | 148651817 | PsycPRwf_R0040 | - | 19 Cys tRNA
|

2253300 | 2253386 | + | 87 | 148651817 | PsycPRwf_R0041 | - | 15 Leu tRNA
|

2280867 | 2280942 | + | 76 | 148651817 | PsycPRwf_R0042 | - | 10 Lys tRNA
|

2281196 | 2281271 | + | 76 | 148651817 | PsycPRwf_R0043 | - | 10 Lys tRNA
|

2380096 | 2380182 | + | 87 | 148651817 | PsycPRwf_R0044 | - | 15 Leu tRNA
|

2526720 | 2526795 | - | 76 | 148651817 | PsycPRwf_R0045 | - | 09 His tRNA
|

2526852 | 2526928 | - | 77 | 148651817 | PsycPRwf_R0046 | - | 11 Arg tRNA
|

2527007 | 2527083 | - | 77 | 148651817 | PsycPRwf_R0047 | - | 03 Pro tRNA
|

2546100 | 2546175 | - | 76 | 148651817 | PsycPRwf_R0048 | - | 20 Trp tRNA
|

2548007 | 2548081 | - | 75 | 148651817 | PsycPRwf_R0049 | - | 12 Thr tRNA
|

2548107 | 2548180 | - | 74 | 148651817 | PsycPRwf_R0050 | - | 01 Gly tRNA
|

2548282 | 2548365 | - | 84 | 148651817 | PsycPRwf_R0051 | - | 18 Tyr tRNA
|

2548435 | 2548510 | - | 76 | 148651817 | PsycPRwf_R0052 | - | 12 Thr tRNA
|

2627330 | 2627405 | + | 76 | 148651817 | PsycPRwf_R0053 | - | 05 Gln tRNA
|

2627627 | 2627702 | + | 76 | 148651817 | PsycPRwf_R0054 | - | 05 Gln tRNA
|

2660779 | 2660896 | - | 118 | 148651817 | PsycPRwf_R0055 | - | 5S ribosomal RNA |

2661047 | 2663909 | - | 2863 | 148651817 | PsycPRwf_R0056 | - | 23S ribosomal RNA |

2664229 | 2664304 | - | 76 | 148651817 | PsycPRwf_R0057 | - | 02 Ala tRNA
|

2664315 | 2664391 | - | 77 | 148651817 | PsycPRwf_R0058 | - | 14 Ile tRNA
|

2664442 | 2665988 | - | 1547 | 148651817 | PsycPRwf_R0059 | - | 16S ribosomal RNA |

2803620 | 2803737 | - | 118 | 148651817 | PsycPRwf_R0060 | - | 5S ribosomal RNA |

2803889 | 2806751 | - | 2863 | 148651817 | PsycPRwf_R0061 | - | 23S ribosomal RNA |

2807071 | 2807146 | - | 76 | 148651817 | PsycPRwf_R0062 | - | 02 Ala tRNA
|

2807157 | 2807233 | - | 77 | 148651817 | PsycPRwf_R0063 | - | 14 Ile tRNA
|

2807284 | 2808830 | - | 1547 | 148651817 | PsycPRwf_R0064 | - | 16S ribosomal RNA |

2809513 | 2809630 | - | 118 | 148651817 | PsycPRwf_R0065 | - | 5S ribosomal RNA |

2809782 | 2812644 | - | 2863 | 148651817 | PsycPRwf_R0066 | - | 23S ribosomal RNA |

2812964 | 2813039 | - | 76 | 148651817 | PsycPRwf_R0067 | - | 02 Ala tRNA
|

2813050 | 2813126 | - | 77 | 148651817 | PsycPRwf_R0068 | - | 14 Ile tRNA
|

2813177 | 2814723 | - | 1547 | 148651817 | PsycPRwf_R0069 | - | 16S ribosomal RNA |

2815438 | 2815555 | - | 118 | 148651817 | PsycPRwf_R0070 | - | 5S ribosomal RNA |

2815707 | 2818569 | - | 2863 | 148651817 | PsycPRwf_R0071 | - | 23S ribosomal RNA |

2818889 | 2818964 | - | 76 | 148651817 | PsycPRwf_R0072 | - | 02 Ala tRNA
|

2818975 | 2819051 | - | 77 | 148651817 | PsycPRwf_R0073 | - | 14 Ile tRNA
|

2819102 | 2820648 | - | 1547 | 148651817 | PsycPRwf_R0074 | - | 16S ribosomal RNA |

2863153 | 2863243 | + | 91 | 148651817 | PsycPRwf_R0075 | - | 08 Ser tRNA
|