Материалы:NC 008346

LOCUS NC_008346 2936195 bp DNA circular BCT 15-SEP-2006 DEFINITION Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete genome. ACCESSION NC_008346 VERSION NC_008346.1 GI:114565576 KEYWORDS . SOURCE Syntrophomonas wolfei subsp. wolfei str. Goettingen ORGANISM Syntrophomonas wolfei subsp. wolfei str. Goettingen Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas. REFERENCE 1 (bases 1 to 2936195) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Sims,D., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J., Sieber,J., Stams,A.J.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Syntrophomonas wolfei subsp. wolfei str. Goettingen JOURNAL Unpublished REFERENCE 2 (bases 1 to 2936195) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2936195) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J., Sieber,J., Stams,A.J.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (25-AUG-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000448. URL -- http://www.jgi.doe.gov JGI Project ID: 3634478 Source DNA and bacteria available from Michael J. McInerney (mcinerney@out.edu) Bacteria also available from DSMZ: DSM 2245B Contacts: Michael J. McInerney (mcinerney@out.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

14133 | 14222 | + | 90 | 114565576 | Swol_R0001 | - | 08 Ser tRNA
|

14345 | 14438 | + | 94 | 114565576 | Swol_R0002 | - | 08 Ser tRNA
|

14445 | 14521 | + | 77 | 114565576 | Swol_R0003 | - | 11 Arg tRNA
|

18046 | 18122 | + | 77 | 114565576 | Swol_R0004 | - | 11 Arg tRNA
|

18610 | 18704 | + | 95 | 114565576 | Swol_R0005 | - | 08 Ser tRNA
|

22691 | 22786 | + | 96 | 114565576 | Swol_R0006 | - | 08 Ser tRNA
|

35872 | 35988 | + | 117 | 114565576 | Swol_R0007 | - | SRP RNA; RNA component of signal recognition particle |

43738 | 45267 | + | 1530 | 114565576 | Swol_R0008 | - | 16S ribosomal RNA |

45511 | 45587 | + | 77 | 114565576 | Swol_R0009 | - | 14 Ile tRNA
|

45777 | 45852 | + | 76 | 114565576 | Swol_R0010 | - | 02 Ala tRNA
|

45990 | 49518 | + | 3529 | 114565576 | Swol_R0011 | - | 23S ribosomal RNA |

49574 | 49687 | + | 114 | 114565576 | Swol_R0012 | - | 5S ribosomal RNA |

49802 | 49910 | + | 109 | 114565576 | Swol_R0013 | - | 5S ribosomal RNA |

50025 | 50133 | + | 109 | 114565576 | Swol_R0014 | - | 5S ribosomal RNA |

325818 | 326166 | + | 349 | 114565576 | Swol_R0067 | - | tmRNA |

417882 | 419570 | + | 1689 | 114565576 | Swol_R0015 | - | 16S ribosomal RNA |

419845 | 422932 | + | 3088 | 114565576 | Swol_R0016 | - | 23S ribosomal RNA |

422988 | 423101 | + | 114 | 114565576 | Swol_R0017 | - | 5S ribosomal RNA |

423216 | 423324 | + | 109 | 114565576 | Swol_R0018 | - | 5S ribosomal RNA |

423439 | 423547 | + | 109 | 114565576 | Swol_R0019 | - | 5S ribosomal RNA |

741640 | 742011 | - | 372 | 114565576 | Swol_R0068 | - | RNA component of RNaseP |

1053401 | 1054902 | + | 1502 | 114565576 | Swol_R0020 | - | 16S ribosomal RNA |

1055296 | 1058555 | + | 3260 | 114565576 | Swol_R0021 | - | 23S ribosomal RNA |

1058611 | 1058724 | + | 114 | 114565576 | Swol_R0022 | - | 5S ribosomal RNA |

1058834 | 1058941 | + | 108 | 114565576 | Swol_R0023 | - | 5S ribosomal RNA |

1059055 | 1059163 | + | 109 | 114565576 | Swol_R0024 | - | 5S ribosomal RNA |

1059277 | 1059385 | + | 109 | 114565576 | Swol_R0025 | - | 5S ribosomal RNA |

1059500 | 1059607 | + | 108 | 114565576 | Swol_R0026 | - | 5S ribosomal RNA |

1059721 | 1059829 | + | 109 | 114565576 | Swol_R0027 | - | 5S ribosomal RNA |

1059943 | 1060051 | + | 109 | 114565576 | Swol_R0028 | - | 5S ribosomal RNA |

1240598 | 1240672 | - | 75 | 114565576 | Swol_R0029 | - | 13 Val tRNA
|

1282600 | 1282675 | - | 76 | 114565576 | Swol_R0030 | - | 04 Glu tRNA
|

1282682 | 1282755 | - | 74 | 114565576 | Swol_R0031 | - | 05 Gln tRNA
|

1301163 | 1301237 | - | 75 | 114565576 | Swol_R0032 | - | 11 Arg tRNA
|

1337977 | 1338052 | - | 76 | 114565576 | Swol_R0033 | - | 20 Trp tRNA
|

1398635 | 1398711 | - | 77 | 114565576 | Swol_R0034 | - | 10 Lys tRNA
|

1408772 | 1408858 | + | 87 | 114565576 | Swol_R0035 | - | 15 Leu tRNA
|

1499295 | 1499383 | - | 89 | 114565576 | Swol_R0036 | - | 15 Leu tRNA
|

1499689 | 1499764 | - | 76 | 114565576 | Swol_R0037 | - | 19 Cys tRNA
|

1499880 | 1499954 | - | 75 | 114565576 | Swol_R0038 | - | 01 Gly tRNA
|

1499963 | 1500038 | - | 76 | 114565576 | Swol_R0039 | - | 17 Phe tRNA
|

1500072 | 1500147 | - | 76 | 114565576 | Swol_R0040 | - | 06 Asp tRNA
|

1505611 | 1505690 | - | 80 | 114565576 | Swol_R0041 | - | 03 Pro tRNA
|

1521253 | 1521330 | - | 78 | 114565576 | Swol_R0042 | - | 03 Pro tRNA
|

1724781 | 1724856 | - | 76 | 114565576 | Swol_R0043 | - | 13 Val tRNA
|

1724863 | 1724937 | - | 75 | 114565576 | Swol_R0044 | - | 04 Glu tRNA
|

1725058 | 1725133 | - | 76 | 114565576 | Swol_R0045 | - | 16 Met tRNA
|

1725266 | 1725340 | - | 75 | 114565576 | Swol_R0046 | - | 07 Asn tRNA
|

1824213 | 1824288 | + | 76 | 114565576 | Swol_R0047 | - | 02 Ala tRNA
|

1891761 | 1891837 | + | 77 | 114565576 | Swol_R0048 | - | 03 Pro tRNA
|

1987454 | 1987529 | - | 76 | 114565576 | Swol_R0049 | - | 10 Lys tRNA
|

1987541 | 1987615 | - | 75 | 114565576 | Swol_R0050 | - | 05 Gln tRNA
|

1987663 | 1987739 | - | 77 | 114565576 | Swol_R0051 | - | 09 His tRNA
|

1987764 | 1987840 | - | 77 | 114565576 | Swol_R0052 | - | 11 Arg tRNA
|

1987848 | 1987921 | - | 74 | 114565576 | Swol_R0053 | - | 01 Gly tRNA
|

2011519 | 2011603 | + | 85 | 114565576 | Swol_R0054 | - | 15 Leu tRNA
|

2196652 | 2196727 | + | 76 | 114565576 | Swol_R0055 | - | 02 Ala tRNA
|

2305544 | 2305628 | - | 85 | 114565576 | Swol_R0056 | - | 15 Leu tRNA
|

2315677 | 2315761 | + | 85 | 114565576 | Swol_R0057 | - | 15 Leu tRNA
|

2393889 | 2393965 | - | 77 | 114565576 | Swol_R0058 | - | 03 Pro tRNA
|

2618758 | 2618832 | - | 75 | 114565576 | Swol_R0059 | - | 12 Thr tRNA
|

2683333 | 2683409 | - | 77 | 114565576 | Swol_R0060 | - | 16 Met tRNA
|

2683413 | 2683488 | - | 76 | 114565576 | Swol_R0061 | - | 12 Thr tRNA
|

2683761 | 2683836 | - | 76 | 114565576 | Swol_R0062 | - | 16 Met tRNA
|

2683844 | 2683928 | - | 85 | 114565576 | Swol_R0063 | - | 18 Tyr tRNA
|

2683941 | 2684016 | - | 76 | 114565576 | Swol_R0064 | - | 12 Thr tRNA
|

2806446 | 2806520 | - | 75 | 114565576 | Swol_R0065 | - | 01 Gly tRNA
|

2890638 | 2890712 | - | 75 | 114565576 | Swol_R0066 | - | 13 Val tRNA
|