Материалы:NC 009077

LOCUS NC_009077 6048425 bp DNA circular BCT 01-MAR-2007 DEFINITION Mycobacterium sp. JLS, complete genome. ACCESSION NC_009077 VERSION NC_009077.1 GI:126432613 KEYWORDS . SOURCE Mycobacterium sp. JLS ORGANISM Mycobacterium sp. JLS Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium. REFERENCE 1 (bases 1 to 6048425) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C.D., Anderson,A.J., Sims,R.C. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Mycobacterium sp. JLS JOURNAL Unpublished REFERENCE 2 (bases 1 to 6048425) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Miller,C.D., Anderson,A.J., Sims,R.C. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (20-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA REFERENCE 3 (bases 1 to 6048425) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-APR-2002) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000580. URL -- http://www.jgi.doe.gov JGI Project ID: 4000378 Source DNA and bacteria available from Charles Miller (cdmiller@biology.usu.edu) Contacts: Charles Miller (cdmiller@biology.usu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: There is a 21kb repeat at 1513668-1544927 in the final assembly that possibly sometimes inserts itself at location 5440327 in the chromosome. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

11963 | 12036 | + | 74 | 126432613 | Mjls_R0001 | - | 14 Ile tRNA
|

12198 | 12273 | + | 76 | 126432613 | Mjls_R0002 | - | 02 Ala tRNA
|

25626 | 25708 | + | 83 | 126432613 | Mjls_R0003 | - | 15 Leu tRNA
|

461457 | 461530 | - | 74 | 126432613 | Mjls_R0004 | - | 01 Gly tRNA
|

819391 | 819476 | + | 86 | 126432613 | Mjls_R0005 | - | 18 Tyr tRNA
|

1029962 | 1030034 | + | 73 | 126432613 | Mjls_R0006 | - | 12 Thr tRNA
|

1030066 | 1030139 | + | 74 | 126432613 | Mjls_R0007 | - | 16 Met tRNA
|

1031979 | 1032054 | + | 76 | 126432613 | Mjls_R0008 | - | 20 Trp tRNA
|

1580692 | 1580768 | + | 77 | 126432613 | Mjls_R0009 | - | 16 Met tRNA
|

1691136 | 1691500 | + | 365 | 126432613 | Mjls_R0010 | - | |

1804201 | 1804273 | + | 73 | 126432613 | Mjls_R0011 | - | 02 Ala tRNA
|

2005329 | 2005400 | + | 72 | 126432613 | Mjls_R0012 | - | 05 Gln tRNA
|

2005463 | 2005535 | + | 73 | 126432613 | Mjls_R0013 | - | 04 Glu tRNA
|

2369681 | 2369755 | - | 75 | 126432613 | Mjls_R0014 | - | 13 Val tRNA
|

2369769 | 2369842 | - | 74 | 126432613 | Mjls_R0015 | - | 19 Cys tRNA
|

2369866 | 2369941 | - | 76 | 126432613 | Mjls_R0016 | - | 01 Gly tRNA
|

2370192 | 2370266 | + | 75 | 126432613 | Mjls_R0017 | - | 13 Val tRNA
|

3060447 | 3060520 | - | 74 | 126432613 | Mjls_R0018 | - | 03 Pro tRNA
|

3093385 | 3093498 | - | 114 | 126432613 | Mjls_R0019 | - | 5S ribosomal RNA |

3093615 | 3096761 | - | 3147 | 126432613 | Mjls_R0020 | - | 23S ribosomal RNA |

3097193 | 3098707 | - | 1515 | 126432613 | Mjls_R0021 | - | 16S ribosomal RNA |

3149630 | 3149700 | - | 71 | 126432613 | Mjls_R0022 | - | 19 Cys tRNA
|

3173250 | 3173326 | + | 77 | 126432613 | Mjls_R0023 | - | 15 Leu tRNA
|

3329732 | 3329817 | + | 86 | 126432613 | Mjls_R0024 | - | 15 Leu tRNA
|

3343635 | 3343714 | + | 80 | 126432613 | Mjls_R0025 | - | 10 Lys tRNA
|

3510686 | 3511037 | - | 352 | 126432613 | Mjls_R0026 | - | |

3532848 | 3532919 | - | 72 | 126432613 | Mjls_R0027 | - | 13 Val tRNA
|

3609627 | 3609703 | - | 77 | 126432613 | Mjls_R0028 | - | 16 Met tRNA
|

3624910 | 3624982 | - | 73 | 126432613 | Mjls_R0029 | - | 07 Asn tRNA
|

3780037 | 3780113 | - | 77 | 126432613 | Mjls_R0030 | - | 03 Pro tRNA
|

3780254 | 3780327 | + | 74 | 126432613 | Mjls_R0031 | - | 01 Gly tRNA
|

3833896 | 3833968 | + | 73 | 126432613 | Mjls_R0032 | - | 11 Arg tRNA
|

3854455 | 3854530 | + | 76 | 126432613 | Mjls_R0033 | - | 09 His tRNA
|

3855965 | 3856040 | + | 76 | 126432613 | Mjls_R0034 | - | 10 Lys tRNA
|

4046705 | 4046788 | - | 84 | 126432613 | Mjls_R0035 | - | 15 Leu tRNA
|

4081140 | 4081253 | - | 114 | 126432613 | Mjls_R0036 | - | 5S ribosomal RNA |

4081378 | 4084517 | - | 3140 | 126432613 | Mjls_R0037 | - | 23S ribosomal RNA |

4084949 | 4086463 | - | 1515 | 126432613 | Mjls_R0038 | - | 16S ribosomal RNA |

4114021 | 4114096 | + | 76 | 126432613 | Mjls_R0039 | - | 11 Arg tRNA
|

4676639 | 4676712 | - | 74 | 126432613 | Mjls_R0040 | - | 15 Leu tRNA
|

4861113 | 4861187 | + | 75 | 126432613 | Mjls_R0041 | - | 05 Gln tRNA
|

4900312 | 4900384 | - | 73 | 126432613 | Mjls_R0042 | - | 02 Ala tRNA
|

5005474 | 5005546 | + | 73 | 126432613 | Mjls_R0043 | - | 11 Arg tRNA
|

5134452 | 5134528 | - | 77 | 126432613 | Mjls_R0044 | - | 17 Phe tRNA
|

5134571 | 5134647 | - | 77 | 126432613 | Mjls_R0045 | - | 06 Asp tRNA
|

5134681 | 5134753 | - | 73 | 126432613 | Mjls_R0046 | - | 04 Glu tRNA
|

5134874 | 5134949 | + | 76 | 126432613 | Mjls_R0047 | - | 10 Lys tRNA
|

5216333 | 5216407 | + | 75 | 126432613 | Mjls_R0048 | - | 12 Thr tRNA
|

5427633 | 5427705 | - | 73 | 126432613 | Mjls_R0049 | - | 12 Thr tRNA
|

5463650 | 5463723 | + | 74 | 126432613 | Mjls_R0050 | - | 03 Pro tRNA
|

5529822 | 5529914 | - | 93 | 126432613 | Mjls_R0051 | - | SRP RNA; RNA component of signal recognition particle |

5529988 | 5530072 | + | 85 | 126432613 | Mjls_R0052 | - | 08 Ser tRNA
|

5594557 | 5594647 | - | 91 | 126432613 | Mjls_R0053 | - | 08 Ser tRNA
|

5612742 | 5612814 | - | 73 | 126432613 | Mjls_R0054 | - | 11 Arg tRNA
|

5612853 | 5612944 | - | 92 | 126432613 | Mjls_R0055 | - | 08 Ser tRNA
|

5616359 | 5616445 | - | 87 | 126432613 | Mjls_R0056 | - | 08 Ser tRNA
|

5846540 | 5846634 | + | 95 | 126432613 | Mjls_R0057 | - | Sec tRNA |