Материалы:NC 008740

LOCUS NC_008740 4326849 bp DNA circular BCT 03-JAN-2007 DEFINITION Marinobacter aquaeolei VT8, complete genome. ACCESSION NC_008740 VERSION NC_008740.1 GI:120552944 KEYWORDS . SOURCE Marinobacter aquaeolei VT8 ORGANISM Marinobacter aquaeolei VT8 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter. REFERENCE 1 (bases 1 to 4326849) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromosome1 of Marinobacter aquaeolei VT8 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4326849) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (03-JAN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4326849) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Edwards,K. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (15-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000514. URL -- http://www.jgi.doe.gov JGI Project ID: 3640420 Source DNA and bacteria available from Katrina Edwards (katrina@whoi.edu) Contacts: Katrina Edwards (katrina@whoi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

56383 | 56459 | - | 77 | 120552944 | Maqu_R0001 | - | 03 Pro tRNA
|

150110 | 150183 | + | 74 | 120552944 | Maqu_R0003 | - | 01 Gly tRNA
|

510275 | 510351 | - | 77 | 120552944 | Maqu_R0004 | - | 11 Arg tRNA
|

756777 | 756853 | - | 77 | 120552944 | Maqu_R0005 | - | 16 Met tRNA
|

798762 | 800294 | + | 1533 | 120552944 | Maqu_R0006 | - | 16S ribosomal RNA |

800385 | 800461 | + | 77 | 120552944 | Maqu_R0007 | - | 14 Ile tRNA
|

800558 | 800633 | + | 76 | 120552944 | Maqu_R0008 | - | 02 Ala tRNA
|

800946 | 803845 | + | 2900 | 120552944 | Maqu_R0009 | - | 23S ribosomal RNA |

803936 | 804050 | + | 115 | 120552944 | Maqu_R0010 | - | 5S ribosomal RNA |

812163 | 812238 | + | 76 | 120552944 | Maqu_R0011 | - | 12 Thr tRNA
|

812279 | 812362 | + | 84 | 120552944 | Maqu_R0012 | - | 18 Tyr tRNA
|

812373 | 812447 | + | 75 | 120552944 | Maqu_R0013 | - | 01 Gly tRNA
|

812461 | 812536 | + | 76 | 120552944 | Maqu_R0014 | - | 12 Thr tRNA
|

813831 | 813906 | + | 76 | 120552944 | Maqu_R0015 | - | 20 Trp tRNA
|

1010143 | 1011675 | + | 1533 | 120552944 | Maqu_R0016 | - | 16S ribosomal RNA |

1011766 | 1011842 | + | 77 | 120552944 | Maqu_R0017 | - | 14 Ile tRNA
|

1011939 | 1012014 | + | 76 | 120552944 | Maqu_R0018 | - | 02 Ala tRNA
|

1012327 | 1015226 | + | 2900 | 120552944 | Maqu_R0019 | - | 23S ribosomal RNA |

1015317 | 1015431 | + | 115 | 120552944 | Maqu_R0020 | - | 5S ribosomal RNA |

1102583 | 1102672 | + | 90 | 120552944 | Maqu_R0021 | - | 08 Ser tRNA
|

1102728 | 1102804 | + | 77 | 120552944 | Maqu_R0022 | - | 11 Arg tRNA
|

1102825 | 1102901 | + | 77 | 120552944 | Maqu_R0023 | - | 11 Arg tRNA
|

1179960 | 1180035 | - | 76 | 120552944 | Maqu_R0024 | - | 07 Asn tRNA
|

1194480 | 1194555 | - | 76 | 120552944 | Maqu_R0025 | - | 07 Asn tRNA
|

1264200 | 1264286 | + | 87 | 120552944 | Maqu_R0026 | - | 15 Leu tRNA
|

1289988 | 1290063 | - | 76 | 120552944 | Maqu_R0027 | - | 04 Glu tRNA
|

1293119 | 1293194 | + | 76 | 120552944 | Maqu_R0028 | - | 01 Gly tRNA
|

1346647 | 1346737 | + | 91 | 120552944 | Maqu_R0029 | - | 08 Ser tRNA
|

1364693 | 1364768 | + | 76 | 120552944 | Maqu_R0030 | - | 01 Gly tRNA
|

1364826 | 1364899 | + | 74 | 120552944 | Maqu_R0031 | - | 19 Cys tRNA
|

1387007 | 1387082 | + | 76 | 120552944 | Maqu_R0032 | - | 10 Lys tRNA
|

1646427 | 1646513 | - | 87 | 120552944 | Maqu_R0033 | - | 15 Leu tRNA
|

1697255 | 1697345 | - | 91 | 120552944 | Maqu_R0034 | - | 08 Ser tRNA
|

1808165 | 1808281 | - | 117 | 120552944 | Maqu_R0035 | - | SRP RNA; RNA component of signal recognition particle |

1890385 | 1890461 | + | 77 | 120552944 | Maqu_R0036 | - | 13 Val tRNA
|

1902341 | 1902416 | - | 76 | 120552944 | Maqu_R0037 | - | 10 Lys tRNA
|

1902479 | 1902554 | - | 76 | 120552944 | Maqu_R0038 | - | 10 Lys tRNA
|

2054975 | 2055059 | - | 85 | 120552944 | Maqu_R0039 | - | 15 Leu tRNA
|

2055125 | 2055200 | - | 76 | 120552944 | Maqu_R0040 | - | 09 His tRNA
|

2055289 | 2055365 | - | 77 | 120552944 | Maqu_R0041 | - | 11 Arg tRNA
|

2055398 | 2055474 | - | 77 | 120552944 | Maqu_R0042 | - | 03 Pro tRNA
|

2108604 | 2108679 | - | 76 | 120552944 | Maqu_R0043 | - | 04 Glu tRNA
|

2108687 | 2108762 | - | 76 | 120552944 | Maqu_R0044 | - | 02 Ala tRNA
|

2245808 | 2245884 | - | 77 | 120552944 | Maqu_R0045 | - | 16 Met tRNA
|

2249039 | 2249114 | - | 76 | 120552944 | Maqu_R0046 | - | 13 Val tRNA
|

2249124 | 2249200 | - | 77 | 120552944 | Maqu_R0047 | - | 06 Asp tRNA
|

2249243 | 2249318 | - | 76 | 120552944 | Maqu_R0048 | - | 13 Val tRNA
|

2284543 | 2284619 | + | 77 | 120552944 | Maqu_R0049 | - | 03 Pro tRNA
|

2321701 | 2321777 | - | 77 | 120552944 | Maqu_R0050 | - | 06 Asp tRNA
|

2642057 | 2642131 | + | 75 | 120552944 | Maqu_R0051 | - | 05 Gln tRNA
|

2645817 | 2645893 | + | 77 | 120552944 | Maqu_R0052 | - | 16 Met tRNA
|

2667985 | 2668071 | + | 87 | 120552944 | Maqu_R0053 | - | 15 Leu tRNA
|

2749391 | 2749688 | - | 298 | 120552944 | Maqu_R0054 | - | rnpB RNA |

2764145 | 2764259 | - | 115 | 120552944 | Maqu_R0055 | - | 5S ribosomal RNA |

2764350 | 2767249 | - | 2900 | 120552944 | Maqu_R0056 | - | 23S ribosomal RNA |

2767562 | 2767637 | - | 76 | 120552944 | Maqu_R0057 | - | 02 Ala tRNA
|

2767860 | 2767936 | - | 77 | 120552944 | Maqu_R0058 | - | 14 Ile tRNA
|

2768183 | 2769715 | - | 1533 | 120552944 | Maqu_R0059 | - | 16S ribosomal RNA |

2810170 | 2810246 | + | 77 | 120552944 | Maqu_R0060 | - | 11 Arg tRNA
|

2836249 | 2836325 | - | 77 | 120552944 | Maqu_R0061 | - | 16 Met tRNA
|

3518381 | 3518456 | + | 76 | 120552944 | Maqu_R0062 | - | 17 Phe tRNA
|

3706599 | 3706683 | - | 85 | 120552944 | Maqu_R0063 | - | 15 Leu tRNA
|

3730537 | 3730899 | + | 363 | 120552944 | Maqu_R0064 | - |