Материалы:NC 007777

LOCUS NC_007777 5433628 bp DNA circular BCT 26-FEB-2007 DEFINITION Frankia sp. CcI3, complete genome. ACCESSION NC_007777 VERSION NC_007777.1 GI:86738724 KEYWORDS . SOURCE Frankia sp. CcI3 ORGANISM Frankia sp. CcI3 Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Frankiaceae; Frankia. REFERENCE 1 (bases 1 to 5433628) AUTHORS Normand,P., Lapierre,P., Tisa,L.S., Gogarten,J.P., Alloisio,N., Bagnarol,E., Bassi,C.A., Berry,A.M., Bickhart,D.M., Choisne,N., Couloux,A., Cournoyer,B., Cruveiller,S., Daubin,V., Demange,N., Francino,M.P., Goltsman,E., Huang,Y., Kopp,O.R., Labarre,L., Lapidus,A., Lavire,C., Marechal,J., Martinez,M., Mastronunzio,J.E., Mullin,B.C., Niemann,J., Pujic,P., Rawnsley,T., Rouy,Z., Schenowitz,C., Sellstedt,A., Tavares,F., Tomkins,J.P., Vallenet,D., Valverde,C., Wall,L.G., Wang,Y., Medigue,C. and Benson,D.R. CONSRTM US DOE Joint Genome Institute TITLE Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography JOURNAL Genome Res. 17 (1), 7-15 (2007) PUBMED 17151343 REFERENCE 2 (bases 1 to 5433628) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (07-FEB-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5433628) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goltsman,E., Martinez,M., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Francino,P., Benson,D.R., Huang,Y., Mastronunzio,J., Bickhart,D., Niemann,J., Rawnsley,T., Tisa,L.S. and Richardson,P. TITLE Direct Submission JOURNAL Submitted (19-JAN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000249. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Louis Tisa (lst@patia.unh.edu) Contact: Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

12560 | 12633 | + | 74 | 86738724 | Francci3_R0001 | - | 14 Ile tRNA
|

123014 | 123089 | + | 76 | 86738724 | Francci3_R0002 | - | 04 Glu tRNA
|

139982 | 140056 | + | 75 | 86738724 | Francci3_R0003 | - | 06 Asp tRNA
|

140109 | 140185 | + | 77 | 86738724 | Francci3_R0004 | - | 17 Phe tRNA
|

159228 | 159301 | + | 74 | 86738724 | Francci3_R0005 | - | Xaa tRNA |

312022 | 312113 | - | 92 | 86738724 | Francci3_R0006 | - | SRP RNA; RNA component of signal recognition particle |

312223 | 312310 | + | 88 | 86738724 | Francci3_R0007 | - | 08 Ser tRNA
|

325308 | 325397 | - | 90 | 86738724 | Francci3_R0008 | - | 08 Ser tRNA
|

331492 | 331660 | - | 169 | 86738724 | Francci3_R0009 | - | |

455994 | 456011 | + | 18 | 86738724 | Francci3_R0010 | - | |

479516 | 479588 | - | 73 | 86738724 | Francci3_R0011 | - | 11 Arg tRNA
|

498597 | 498687 | - | 91 | 86738724 | Francci3_R0012 | - | 08 Ser tRNA
|

506116 | 506188 | + | 73 | 86738724 | Francci3_R0013 | - | 11 Arg tRNA
|

650716 | 650800 | + | 85 | 86738724 | Francci3_R0014 | - | 18 Tyr tRNA
|

654669 | 654744 | + | 76 | 86738724 | Francci3_R0015 | - | 12 Thr tRNA
|

654844 | 654920 | + | 77 | 86738724 | Francci3_R0016 | - | 16 Met tRNA
|

657974 | 658046 | + | 73 | 86738724 | Francci3_R0017 | - | 20 Trp tRNA
|

1055014 | 1055097 | - | 84 | 86738724 | Francci3_R0018 | - | 15 Leu tRNA
|

1193833 | 1193908 | + | 76 | 86738724 | Francci3_R0019 | - | |

1225981 | 1226056 | - | 76 | 86738724 | Francci3_R0020 | - | 10 Lys tRNA
|

1235918 | 1235993 | - | 76 | 86738724 | Francci3_R0021 | - | 09 His tRNA
|

1359186 | 1359258 | - | 73 | 86738724 | Francci3_R0022 | - | 11 Arg tRNA
|

1436620 | 1436693 | - | 74 | 86738724 | Francci3_R0023 | - | 01 Gly tRNA
|

1436741 | 1436816 | + | 76 | 86738724 | Francci3_R0024 | - | 03 Pro tRNA
|

1478719 | 1478795 | + | 77 | 86738724 | Francci3_R0025 | - | 02 Ala tRNA
|

1630709 | 1630783 | - | 75 | 86738724 | Francci3_R0026 | - | 13 Val tRNA
|

1630797 | 1630868 | - | 72 | 86738724 | Francci3_R0027 | - | 19 Cys tRNA
|

1630912 | 1630984 | - | 73 | 86738724 | Francci3_R0028 | - | 01 Gly tRNA
|

1633415 | 1633486 | + | 72 | 86738724 | Francci3_R0029 | - | 13 Val tRNA
|

1734780 | 1735088 | - | 309 | 86738724 | Francci3_R0030 | - | RNA component of RNaseP |

1750296 | 1750369 | - | 74 | 86738724 | Francci3_R0031 | - | 03 Pro tRNA
|

1941005 | 1941080 | - | 76 | 86738724 | Francci3_R0032 | - | 15 Leu tRNA
|

2386761 | 2386845 | + | 85 | 86738724 | Francci3_R0033 | - | 15 Leu tRNA
|

3017451 | 3017526 | + | 76 | 86738724 | Francci3_R0034 | - | |

3540383 | 3540549 | - | 167 | 86738724 | Francci3_R0035 | - | |

3619318 | 3619389 | - | 72 | 86738724 | Francci3_R0036 | - | 13 Val tRNA
|

3645050 | 3645163 | - | 114 | 86738724 | Francci3_R0037 | - | |

3747925 | 3748041 | - | 117 | 86738724 | Francci3_R0038 | - | 5S ribosomal RNA |

3748112 | 3751216 | - | 3105 | 86738724 | Francci3_R0039 | - | 23S ribosomal RNA |

3751629 | 3753140 | - | 1512 | 86738724 | Francci3_R0040 | - | 16S ribosomal RNA |

3777396 | 3777525 | - | 130 | 86738724 | Francci3_R0041 | - | |

3816293 | 3816365 | + | 73 | 86738724 | Francci3_R0042 | - | 07 Asn tRNA
|

4032685 | 4032761 | - | 77 | 86738724 | Francci3_R0043 | - | 16 Met tRNA
|

4330689 | 4330761 | - | 73 | 86738724 | Francci3_R0044 | - | 04 Glu tRNA
|

4330869 | 4330940 | - | 72 | 86738724 | Francci3_R0045 | - | 05 Gln tRNA
|

4365755 | 4365871 | - | 117 | 86738724 | Francci3_R0046 | - | 5S ribosomal RNA |

4365942 | 4369046 | - | 3105 | 86738724 | Francci3_R0047 | - | 23S ribosomal RNA |

4369459 | 4370970 | - | 1512 | 86738724 | Francci3_R0048 | - | 16S ribosomal RNA |

4463891 | 4463962 | + | 72 | 86738724 | Francci3_R0049 | - | 11 Arg tRNA
|

4465283 | 4465358 | - | 76 | 86738724 | Francci3_R0050 | - | |

4530150 | 4530226 | - | 77 | 86738724 | Francci3_R0051 | - | 16 Met tRNA
|

4685233 | 4685310 | - | 78 | 86738724 | Francci3_R0052 | - | 15 Leu tRNA
|

4739936 | 4740007 | + | 72 | 86738724 | Francci3_R0053 | - | 05 Gln tRNA
|

4772991 | 4773067 | + | 77 | 86738724 | Francci3_R0054 | - | 02 Ala tRNA
|

4868061 | 4868187 | - | 127 | 86738724 | Francci3_R0055 | - | |

4868188 | 4868279 | - | 92 | 86738724 | Francci3_R0056 | - | |

4886215 | 4886290 | + | 76 | 86738724 | Francci3_R0057 | - | 12 Thr tRNA
|

4924264 | 4924339 | - | 76 | 86738724 | Francci3_R0058 | - | |

5039206 | 5039304 | + | 99 | 86738724 | Francci3_R0059 | - | |

5067454 | 5067607 | + | 154 | 86738724 | Francci3_R0060 | - | |

5104095 | 5104171 | - | 77 | 86738724 | Francci3_R0061 | - | 03 Pro tRNA
|

5148262 | 5148333 | + | 72 | 86738724 | Francci3_R0062 | - | 12 Thr tRNA
|

5171614 | 5171702 | - | 89 | 86738724 | Francci3_R0063 | - | 08 Ser tRNA
|

5180002 | 5180074 | + | 73 | 86738724 | Francci3_R0064 | - | 10 Lys tRNA
|

5188571 | 5188644 | - | 74 | 86738724 | Francci3_R0065 | - | 01 Gly tRNA
|

5213920 | 5214154 | + | 235 | 86738724 | Francci3_R0066 | - | |

5215315 | 5215501 | + | 187 | 86738724 | Francci3_R0067 | - | |

5255171 | 5255287 | + | 117 | 86738724 | Francci3_R0068 | - | |

5295134 | 5295216 | - | 83 | 86738724 | Francci3_R0069 | - | 15 Leu tRNA
|

5380134 | 5380206 | - | 73 | 86738724 | Francci3_R0070 | - | 02 Ala tRNA
|