Материалы:NC 003911

```
LOCUS NC_003911 4109442 bp DNA circular BCT 18-JAN-2006
DEFINITION Silicibacter pomeroyi DSS-3, complete genome.
ACCESSION NC_003911
VERSION NC_003911.11 GI:56694928
KEYWORDS .
SOURCE Silicibacter pomeroyi DSS-3
ORGANISM Silicibacter pomeroyi DSS-3
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
Rhodobacteraceae; Silicibacter.
REFERENCE 1 (bases 1 to 4109442)
AUTHORS Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F.,
Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R.,
Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G.,
Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J.,
Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., Deboy,R.T.,
Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A.,
Rosovitz,M.J., Haft,D.H., Selengut,J. and Ward,N.
TITLE Genome sequence of Silicibacter pomeroyi reveals adaptations to the
marine environment
JOURNAL Nature 432 (7019), 910-913 (2004)
PUBMED 15602564
REFERENCE 2 (bases 1 to 4109442)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4109442)
AUTHORS Moran,M.A., Buchan,A., Gonzalez,J.M., Heidelberg,J.F.,
Whitman,W.B., Kiene,R.P., Henriksen,J.R., King,G.M., Belas,R.,
Fuqua,C., Brinkac,L., Lewis,M., Johri,S., Weaver,B., Pai,G.,
Eisen,J.A., Rahe,E., Sheldon,W.M., Ye,W., Miller,T.R., Carlton,J.,
Rasko,D.A., Paulsen,I.T., Ren,Q., Daugherty,S.C., DeBoy,R.T.,
Dodson,R.J., Durkin,A.S., Madupu,R., Nelson,W.C., Sullivan,S.A.,
Rosovitz,M., Haft,D.H., Selengut,J. and Ward,N.L.
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2004) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000031.
On Dec 17, 2004 this sequence version replaced gi:51904980.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

176231 | 176306 | + | 76 | 56694928 | SPO_tRNA-Gln-1 | - | 05 Gln tRNA
|

176312 | 176389 | + | 78 | 56694928 | SPO_tRNA-Pro-2 | - | 03 Pro tRNA
|

228692 | 228768 | - | 77 | 56694928 | SPO_tRNA-Pro-3 | - | 03 Pro tRNA
|

261910 | 263364 | + | 1455 | 56694928 | SPO_Sp16SA | - | 16S ribosomal RNA |

263580 | 263656 | + | 77 | 56694928 | SPO_tRNA-Ile-1 | - | 14 Ile tRNA
|

263730 | 263805 | + | 76 | 56694928 | SPO_tRNA-Ala-1 | - | 02 Ala tRNA
|

264255 | 267149 | + | 2895 | 56694928 | SPO_Sp23SA | - | 23S ribosomal RNA |

267353 | 267470 | + | 118 | 56694928 | SPO_Sp5SD | - | 5S ribosomal RNA |

294934 | 295009 | + | 76 | 56694928 | SPO_tRNA-Lys-2 | - | 10 Lys tRNA
|

485387 | 485463 | - | 77 | 56694928 | SPO_tRNA-Arg-2 | - | 11 Arg tRNA
|

537350 | 537426 | + | 77 | 56694928 | SPO_tRNA-Arg-3 | - | 11 Arg tRNA
|

636094 | 636168 | + | 75 | 56694928 | SPO_tRNA-Gln-2 | - | 05 Gln tRNA
|

726006 | 726081 | - | 76 | 56694928 | SPO_tRNA-Val-2 | - | 13 Val tRNA
|

758890 | 758965 | + | 76 | 56694928 | SPO_tRNA-Trp-2 | - | 20 Trp tRNA
|

1082915 | 1082990 | + | 76 | 56694928 | SPO_tRNA-Thr-2 | - | 12 Thr tRNA
|

1205683 | 1205766 | - | 84 | 56694928 | SPO_tRNA-Pseudo-2 | - | |

1217181 | 1217255 | - | 75 | 56694928 | SPO_tRNA-Gly-2 | - | 01 Gly tRNA
|

1217973 | 1218047 | - | 75 | 56694928 | SPO_tRNA-Gly-3 | - | 01 Gly tRNA
|

1218081 | 1218155 | - | 75 | 56694928 | SPO_tRNA-Gly-4 | - | 01 Gly tRNA
|

1307509 | 1307582 | - | 74 | 56694928 | SPO_tRNA-Cys-2 | - | 19 Cys tRNA
|

1458077 | 1458163 | + | 87 | 56694928 | SPO_tRNA-Leu-2 | - | 15 Leu tRNA
|

1849403 | 1849477 | - | 75 | 56694928 | SPO_tRNA-Glu-2 | - | 04 Glu tRNA
|

1849667 | 1849741 | - | 75 | 56694928 | SPO_tRNA-Glu-3 | - | 04 Glu tRNA
|

1886364 | 1886440 | + | 77 | 56694928 | SPO_tRNA-His-1 | - | 09 His tRNA
|

2032300 | 2032611 | - | 312 | 56694928 | SPO_SptmRNA1 | - | sRNA |

2046619 | 2046708 | + | 90 | 56694928 | SPO_tRNA-Ser-2 | - | 08 Ser tRNA
|

2119397 | 2119486 | + | 90 | 56694928 | SPO_tRNA-Ser-3 | - | 08 Ser tRNA
|

2140232 | 2140307 | - | 76 | 56694928 | SPO_tRNA-Thr-3 | - | 12 Thr tRNA
|

2140752 | 2140828 | - | 77 | 56694928 | SPO_tRNA-Arg-4 | - | 11 Arg tRNA
|

2173838 | 2173911 | + | 74 | 56694928 | SPO_tRNA-Gly-5 | - | 01 Gly tRNA
|

2251315 | 2251389 | + | 75 | 56694928 | SPO_tRNA-Asn-1 | - | 07 Asn tRNA
|

2251642 | 2251727 | - | 86 | 56694928 | SPO_tRNA-Leu-3 | - | 15 Leu tRNA
|

2274996 | 2275072 | - | 77 | 56694928 | SPO_tRNA-Pro-4 | - | 03 Pro tRNA
|

2308217 | 2308292 | + | 76 | 56694928 | SPO_tRNA-Met-2 | - | 16 Met tRNA
|

2310677 | 2310751 | + | 75 | 56694928 | SPO_tRNA-Asn-2 | - | 07 Asn tRNA
|

2429430 | 2429513 | - | 84 | 56694928 | SPO_tRNA-Leu-4 | - | 15 Leu tRNA
|

2645397 | 2645473 | + | 77 | 56694928 | SPO_tRNA-Pro-5 | - | 03 Pro tRNA
|

2755575 | 2755651 | - | 77 | 56694928 | SPO_tRNA-Asp-1 | - | 06 Asp tRNA
|

2755704 | 2755780 | - | 77 | 56694928 | SPO_tRNA-Asp-2 | - | 06 Asp tRNA
|

2766850 | 2766924 | - | 75 | 56694928 | SPO_tRNA-Val-3 | - | 13 Val tRNA
|

2929931 | 2930020 | - | 90 | 56694928 | SPO_tRNA-Ser-4 | - | 08 Ser tRNA
|

3163914 | 3164254 | - | 341 | 56694928 | SPO_SprnpB1 | - | sRNA |

3206889 | 3206963 | - | 75 | 56694928 | SPO_tRNA-Gly-6 | - | 01 Gly tRNA
|

3207063 | 3207149 | - | 87 | 56694928 | SPO_tRNA-Leu-5 | - | 15 Leu tRNA
|

3461953 | 3462029 | - | 77 | 56694928 | SPO_tRNA-Met-3 | - | 16 Met tRNA
|

3462072 | 3462189 | - | 118 | 56694928 | SPO_Sp5SE | - | 5S ribosomal RNA |

3462393 | 3465287 | - | 2895 | 56694928 | SPO_Sp23SB | - | 23S ribosomal RNA |

3465737 | 3465812 | - | 76 | 56694928 | SPO_tRNA-Ala-2 | - | 02 Ala tRNA
|

3465886 | 3465962 | - | 77 | 56694928 | SPO_tRNA-Ile-2 | - | 14 Ile tRNA
|

3466178 | 3467632 | - | 1455 | 56694928 | SPO_Sp16SB | - | 16S ribosomal RNA |

3481060 | 3481134 | + | 75 | 56694928 | SPO_tRNA-Val-4 | - | 13 Val tRNA
|

3701370 | 3701446 | + | 77 | 56694928 | SPO_tRNA-Met-4 | - | 16 Met tRNA
|

3827177 | 3827252 | + | 76 | 56694928 | SPO_tRNA-Ala-3 | - | 02 Ala tRNA
|

3871397 | 3871486 | + | 90 | 56694928 | SPO_tRNA-Ser-5 | - | 08 Ser tRNA
|

3892522 | 3892598 | - | 77 | 56694928 | SPO_tRNA-Arg-5 | - | 11 Arg tRNA
|

3985347 | 3985433 | + | 87 | 56694928 | SPO_tRNA-Leu-6 | - | 15 Leu tRNA
|

4010290 | 4010366 | - | 77 | 56694928 | SPO_tRNA-Met-5 | - | 16 Met tRNA
|

4010409 | 4010526 | - | 118 | 56694928 | SPO_Sp5SF | - | 5S ribosomal RNA |

4010730 | 4013624 | - | 2895 | 56694928 | SPO_Sp23SC | - | 23S ribosomal RNA |

4014074 | 4014149 | - | 76 | 56694928 | SPO_tRNA-Ala-4 | - | 02 Ala tRNA
|

4014223 | 4014299 | - | 77 | 56694928 | SPO_tRNA-Ile-3 | - | 14 Ile tRNA
|

4014515 | 4015969 | - | 1455 | 56694928 | SPO_Sp16SC | - | 16S ribosomal RNA |