Материалы:NC 004337

```
LOCUS NC_004337 4607203 bp DNA circular BCT 14-SEP-2007
DEFINITION Shigella flexneri 2a str. 301, complete genome.
ACCESSION NC_004337
VERSION NC_004337.1 GI:24111450
KEYWORDS .
SOURCE Shigella flexneri 2a str. 301
ORGANISM Shigella flexneri 2a str. 301
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Shigella.
REFERENCE 1 (bases 1 to 4607203)
AUTHORS Jin,Q., Yuan,Z., Xu,J., Wang,Y., Shen,Y., Lu,W., Wang,J., Liu,H.,
Yang,J., Yang,F., Zhang,X., Zhang,J., Yang,G., Wu,H., Qu,D.,
Dong,J., Sun,L., Xue,Y., Zhao,A., Gao,Y., Zhu,J., Kan,B., Ding,K.,
Chen,S., Cheng,H., Yao,Z., He,B., Chen,R., Ma,D., Qiang,B., Wen,Y.,
Hou,Y. and Yu,J.
TITLE Genome sequence of Shigella flexneri 2a: insights into
pathogenicity through comparison with genomes of Escherichia coli
K12 and O157
JOURNAL Nucleic Acids Res. 30 (20), 4432-4441 (2002)
PUBMED 12384590
REFERENCE 2 (bases 1 to 4607203)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (18-OCT-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4607203)
AUTHORS Jin,Q., Shen,Y., Wang,J.H., Liu,H., Yang,J., Yang,F., Zhang,X.B.,
Zhang,J.Y., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y.,
Zhao,A.L., Gao,Y.S., Zhu,J.P., Chen,S.X., Yao,Z.J., Wang,Y.,
Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D.
TITLE Direct Submission
JOURNAL Submitted (21-MAY-2001) State Key Laboratory for Moleclular
Virology and Genetic Engineering, Microbial Genome Center of
Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA,
Beijing 100176, P.R.China
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE005674.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

214669 | 216209 | + | 1541 | 24111450 | SF4435 | - | 16S ribosomal RNA |

216278 | 216354 | + | 77 | 24111450 | SF4436 | - | 14 Ile tRNA
|

216397 | 216472 | + | 76 | 24111450 | SF4437 | - | 02 Ala tRNA
|

216745 | 216820 | + | 76 | 24111450 | SF4438 | - | 04 Glu tRNA
|

217014 | 219917 | + | 2904 | 24111450 | SF4439 | - | 23S ribosomal RNA |

220012 | 220130 | + | 119 | 24111450 | SF4440 | - | 5S ribosomal RNA |

220183 | 220259 | + | 77 | 24111450 | SF4441 | - | 06 Asp tRNA
|

229833 | 229909 | + | 77 | 24111450 | SF4442 | - | 06 Asp tRNA
|

311201 | 311276 | + | 76 | 24111450 | SF4443 | - | 12 Thr tRNA
|

412979 | 413092 | + | 114 | 24111450 | SF4554 | - | 4.5S RNA; component of ribonucleoprotein particle |

479933 | 480009 | + | 77 | 24111450 | SF4444 | - | 11 Arg tRNA
|

576337 | 576412 | - | 76 | 24111450 | SF4445 | - | 10 Lys tRNA
|

576416 | 576491 | - | 76 | 24111450 | SF4446 | - | 13 Val tRNA
|

576627 | 576702 | - | 76 | 24111450 | SF4447 | - | 10 Lys tRNA
|

654586 | 654662 | + | 77 | 24111450 | SF4448 | - | 16 Met tRNA
|

654672 | 654756 | + | 85 | 24111450 | SF4449 | - | 15 Leu tRNA
|

654780 | 654854 | + | 75 | 24111450 | SF4450 | - | 05 Gln tRNA
|

654889 | 654963 | + | 75 | 24111450 | SF4451 | - | 05 Gln tRNA
|

654979 | 655055 | + | 77 | 24111450 | SF4452 | - | 16 Met tRNA
|

655103 | 655177 | + | 75 | 24111450 | SF4453 | - | 05 Gln tRNA
|

655215 | 655289 | + | 75 | 24111450 | SF4454 | - | 05 Gln tRNA
|

711827 | 711903 | + | 77 | 24111450 | SF4455 | - | 16 Met tRNA
|

711905 | 711981 | + | 77 | 24111450 | SF4456 | - | 11 Arg tRNA
|

711984 | 712058 | + | 75 | 24111450 | SF4457 | - | 12 Thr tRNA
|

712062 | 712136 | + | 75 | 24111450 | SF4458 | - | 01 Gly tRNA
|

720865 | 720941 | + | 77 | 24111450 | SF4459 | - | 16 Met tRNA
|

720943 | 721019 | + | 77 | 24111450 | SF4460 | - | 11 Arg tRNA
|

721022 | 721097 | + | 76 | 24111450 | SF4461 | - | 12 Thr tRNA
|

721101 | 721175 | + | 75 | 24111450 | SF4462 | - | 01 Gly tRNA
|

877256 | 877343 | - | 88 | 24111450 | SF4463 | - | 08 Ser tRNA
|

1019548 | 1019635 | - | 88 | 24111450 | SF4464 | - | 08 Ser tRNA
|

1072445 | 1072532 | - | 88 | 24111450 | SF4465 | - | 08 Ser tRNA
|

1282577 | 1282661 | - | 85 | 24111450 | SF4466 | - | 18 Tyr tRNA
|

1578004 | 1578080 | - | 77 | 24111450 | SF4467 | - | 11 Arg tRNA
|

1578182 | 1578257 | - | 76 | 24111450 | SF4468 | - | 16 Met tRNA
|

1727499 | 1727575 | + | 77 | 24111450 | SF4469 | - | 13 Val tRNA
|

1936890 | 1936964 | - | 75 | 24111450 | SF4470 | - | 01 Gly tRNA
|

1936968 | 1937043 | - | 76 | 24111450 | SF4471 | - | 12 Thr tRNA
|

1937046 | 1937122 | - | 77 | 24111450 | SF4472 | - | 11 Arg tRNA
|

1937124 | 1937199 | - | 76 | 24111450 | SF4473 | - | 16 Met tRNA
|

1988098 | 1988184 | - | 87 | 24111450 | SF4474 | - | 15 Leu tRNA
|

1988197 | 1988270 | - | 74 | 24111450 | SF4475 | - | 19 Cys tRNA
|

1988325 | 1988400 | - | 76 | 24111450 | SF4476 | - | 01 Gly tRNA
|

2025094 | 2025180 | - | 87 | 24111450 | SF4555 | - | anti-sense RNA silencer of rcsA gene |

2060922 | 2060996 | - | 75 | 24111450 | SF4477 | - | 01 Gly tRNA
|

2061000 | 2061075 | - | 76 | 24111450 | SF4478 | - | 12 Thr tRNA
|

2061078 | 2061154 | - | 77 | 24111450 | SF4479 | - | 10 Lys tRNA
|

2061156 | 2061231 | - | 76 | 24111450 | SF4480 | - | 16 Met tRNA
|

2066450 | 2066539 | - | 90 | 24111450 | SF4481 | - | 08 Ser tRNA
|

2067531 | 2067606 | + | 76 | 24111450 | SF4482 | - | 07 Asn tRNA
|

2075382 | 2075457 | - | 76 | 24111450 | SF4483 | - | 07 Asn tRNA
|

2077190 | 2077265 | + | 76 | 24111450 | SF4484 | - | 07 Asn tRNA
|

2079600 | 2079676 | + | 77 | 24111450 | SF4485 | - | Xaa tRNA |

2309415 | 2309492 | + | 78 | 24111450 | SF4486 | - | 03 Pro tRNA
|

2334488 | 2334579 | + | 92 | 24111450 | SF4556 | - | MicF RNA; inhibitor of OpmF |

2476607 | 2476681 | + | 75 | 24111450 | SF4487 | - | 11 Arg tRNA
|

2519453 | 2519528 | - | 76 | 24111450 | SF4488 | - | 02 Ala tRNA
|

2519568 | 2519643 | - | 76 | 24111450 | SF4489 | - | 02 Ala tRNA
|

2522349 | 2522424 | + | 76 | 24111450 | SF4490 | - | 13 Val tRNA
|

2522468 | 2522543 | + | 76 | 24111450 | SF4491 | - | 13 Val tRNA
|

2522548 | 2522623 | + | 76 | 24111450 | SF4492 | - | 10 Lys tRNA
|

2723111 | 2723229 | - | 119 | 24111450 | SF4493 | - | 5S ribosomal RNA |

2723324 | 2726227 | - | 2904 | 24111450 | SF4494 | - | 23S ribosomal RNA |

2726411 | 2726486 | - | 76 | 24111450 | SF4495 | - | 02 Ala tRNA
|

2726529 | 2726605 | - | 77 | 24111450 | SF4496 | - | 14 Ile tRNA
|

2726674 | 2728214 | - | 1541 | 24111450 | SF4497 | - | 16S ribosomal RNA |

2754038 | 2754493 | + | 456 | 24111450 | SF4557 | - | 10Sa RNA (tmRNA); tags incomplete translation products for degradation |

2758367 | 2758442 | - | 76 | 24111450 | SF4498 | - | 16 Met tRNA
|

2791550 | 2791626 | - | 77 | 24111450 | SF4499 | - | 11 Arg tRNA
|

2791691 | 2791767 | - | 77 | 24111450 | SF4500 | - | 11 Arg tRNA
|

2791832 | 2791908 | - | 77 | 24111450 | SF4501 | - | 11 Arg tRNA
|

2791973 | 2792049 | - | 77 | 24111450 | SF4502 | - | 11 Arg tRNA
|

2792053 | 2792145 | - | 93 | 24111450 | SF4503 | - | 08 Ser tRNA
|

2883156 | 2883524 | - | 369 | 24111450 | SF4558 | - | CsrB RNA; inhibitor of CsrA |

2903131 | 2903243 | + | 113 | 24111450 | SF4559 | - | gcvB RNA; regulator |

2907821 | 2907897 | + | 77 | 24111450 | SF4504 | - | 16 Met tRNA
|

2907931 | 2908007 | + | 77 | 24111450 | SF4505 | - | 16 Met tRNA
|

2957652 | 2957725 | - | 74 | 24111450 | SF4506 | - | 01 Gly tRNA
|

2989897 | 2990080 | + | 184 | 24111450 | SF4560 | - | 6S RNA |

3052464 | 3052539 | + | 76 | 24111450 | SF4507 | - | 17 Phe tRNA
|

3206073 | 3206148 | + | 76 | 24111450 | SF4508 | - | 16 Met tRNA
|

3261710 | 3262086 | - | 377 | 24111450 | SF4561 | - | RNase P, RNA component; M1 RNA; processes tRNA, 4.5S RNA |

3310396 | 3310472 | - | 77 | 24111450 | SF4509 | - | 16 Met tRNA
|

3314256 | 3314342 | - | 87 | 24111450 | SF4510 | - | 15 Leu tRNA
|

3406299 | 3406417 | - | 119 | 24111450 | SF4511 | - | 5S ribosomal RNA |

3406456 | 3406531 | - | 76 | 24111450 | SF4512 | - | 12 Thr tRNA
|

3406544 | 3406662 | - | 119 | 24111450 | SF4513 | - | 5S ribosomal RNA |

3406757 | 3409660 | - | 2904 | 24111450 | SF4514 | - | 23S ribosomal RNA |

3409854 | 3409929 | - | 76 | 24111450 | SF4515 | - | 04 Glu tRNA
|

3410015 | 3411556 | - | 1542 | 24111450 | SF4516 | - | 16S ribosomal RNA |

3679680 | 3679756 | - | 77 | 24111450 | SF4517 | - | 03 Pro tRNA
|

3806404 | 3806494 | + | 91 | 24111450 | SF4518 | - | Sec tRNA |

3951291 | 3952832 | + | 1542 | 24111450 | SF4519 | - | 16S ribosomal RNA |

3952918 | 3952993 | + | 76 | 24111450 | SF4564 | - | 04 Glu tRNA
|

3953187 | 3956090 | + | 2904 | 24111450 | SF4521 | - | 23S ribosomal RNA |

3956185 | 3956303 | + | 119 | 24111450 | SF4522 | - | 5S ribosomal RNA |

3956356 | 3956432 | + | 77 | 24111450 | SF4523 | - | 06 Asp tRNA
|

3956441 | 3956516 | + | 76 | 24111450 | SF4524 | - | 20 Trp tRNA
|

3990939 | 3991015 | + | 77 | 24111450 | SF4525 | - | 11 Arg tRNA
|

3991074 | 3991149 | + | 76 | 24111450 | SF4526 | - | 09 His tRNA
|

3991170 | 3991256 | + | 87 | 24111450 | SF4527 | - | 15 Leu tRNA
|

3991299 | 3991375 | + | 77 | 24111450 | SF4528 | - | 03 Pro tRNA
|

4048482 | 4050023 | + | 1542 | 24111450 | SF4529 | - | 16S ribosomal RNA |

4050109 | 4050184 | + | 76 | 24111450 | SF4530 | - | 04 Glu tRNA
|

4050378 | 4053281 | + | 2904 | 24111450 | SF4531 | - | 23S ribosomal RNA |

4053376 | 4053494 | + | 119 | 24111450 | SF4532 | - | 5S ribosomal RNA |

4062588 | 4062696 | + | 109 | 24111450 | SF4562 | - | spot 42 RNA, inhibition of DNA synthesis |

4178307 | 4178416 | - | 110 | 24111450 | SF4563 | - | OxyS RNA; regulator |

4186671 | 4188212 | + | 1542 | 24111450 | SF4533 | - | 16S ribosomal RNA |

4188298 | 4188373 | + | 76 | 24111450 | SF4534 | - | 04 Glu tRNA
|

4188567 | 4191470 | + | 2904 | 24111450 | SF4535 | - | 23S ribosomal RNA |

4191565 | 4191683 | + | 119 | 24111450 | SF4536 | - | 5S ribosomal RNA |

4195141 | 4195216 | + | 76 | 24111450 | SF4537 | - | 12 Thr tRNA
|

4195225 | 4195309 | + | 85 | 24111450 | SF4538 | - | 18 Tyr tRNA
|

4195426 | 4195500 | + | 75 | 24111450 | SF4539 | - | 01 Gly tRNA
|

4195507 | 4195582 | + | 76 | 24111450 | SF4540 | - | 12 Thr tRNA
|

4227109 | 4228650 | + | 1542 | 24111450 | SF4541 | - | 16S ribosomal RNA |

4228736 | 4228811 | + | 76 | 24111450 | SF4542 | - | 04 Glu tRNA
|

4229005 | 4231908 | + | 2904 | 24111450 | SF4543 | - | 23S ribosomal RNA |

4232003 | 4232121 | + | 119 | 24111450 | SF4544 | - | 5S ribosomal RNA |

4396148 | 4396232 | - | 85 | 24111450 | SF4545 | - | 15 Leu tRNA
|

4466171 | 4466246 | - | 76 | 24111450 | SF4546 | - | 17 Phe tRNA
|

4496947 | 4497022 | + | 76 | 24111450 | SF4547 | - | 01 Gly tRNA
|

4497180 | 4497255 | + | 76 | 24111450 | SF4548 | - | 01 Gly tRNA
|

4497291 | 4497366 | + | 76 | 24111450 | SF4549 | - | 01 Gly tRNA
|

4497402 | 4497477 | + | 76 | 24111450 | SF4550 | - | 01 Gly tRNA
|

4572939 | 4573025 | - | 87 | 24111450 | SF4551 | - | 15 Leu tRNA
|

4573061 | 4573149 | - | 89 | 24111450 | SF4552 | - | 15 Leu tRNA
|

4573178 | 4573264 | - | 87 | 24111450 | SF4553 | - | 15 Leu tRNA
|