Материалы:NC 009674

LOCUS NC_009674 4087024 bp DNA circular BCT 25-JUL-2007 DEFINITION Bacillus cereus subsp. cytotoxis NVH 391-98, complete genome. ACCESSION NC_009674 VERSION NC_009674.1 GI:152973854 KEYWORDS . SOURCE Bacillus cereus subsp. cytotoxis NVH 391-98 ORGANISM Bacillus cereus subsp. cytotoxis NVH 391-98 Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group. REFERENCE 1 (bases 1 to 4087024) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M., Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D., Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Bacillus cereus subsp. cytotoxis NVH 391-98 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4087024) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4087024) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P., Auger,S., Galleron,N., Sanchis,V., Gohar,M., Broussole,V., Brillard,J., Guinebretiere,M.-H., Ehrlich,S.D., Lereclus,D., Aymerich,S., Nguen-the,C. and Sorokin,A. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (10-JUL-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000764. URL -- http://www.jgi.doe.gov JGI Project ID: 4000557 Source DNA and bacteria available from Alexei Sorokin (alexei.sorokine@jouy.inra.fr) Contacts: Alexei Sorokin (alexei.sorokine@jouy.inra.fr) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of a least two independent clones. Each base pair has a minumum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional notes: Bacillus cereus NVH 398-91 was originally isolated as a contaminant of vegetable puree in a retirement house in Essone (France) by Marie-Laure De Buyser (AFSSA, France). The strain was identified as a cause of a severe food poisoning case. It was further characterized biochemically and a novel cytotoxin K was identified as a major cause of epithelial cell lysis leading to necrotic enteritis (Lund et al, Mol Microbiol, 2000, 38, 254). Although the strain was identified as Bacillus cereus, it appeared to be different from all known strains. Detailed phylogenetic studies using MLST approach placed the strain rather far from main strain clusters, but confirmed that the strain belongs to the B. cereus group (Sorokin et al, Appl Env Microbiol, 2006, 72, 1569). Genomic sequence clearly indicated that the strain is very different from other representatives of the group and should be assigned a new species status, for which we propose a name Bacillus cytotoxis. However, assigning of the novel species status is hampered by the fact that only one such strain is described at the moment of genomic sequencing being done (2005). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

9424 | 10967 | + | 1544 | 152973854 | Bcer98_R0001 | - | 16S ribosomal RNA |

11102 | 11178 | + | 77 | 152973854 | Bcer98_R0002 | - | 14 Ile tRNA
|

11187 | 11262 | + | 76 | 152973854 | Bcer98_R0003 | - | 02 Ala tRNA
|

11352 | 14259 | + | 2908 | 152973854 | Bcer98_R0004 | - | 23S ribosomal RNA |

14357 | 14471 | + | 115 | 152973854 | Bcer98_R0005 | - | 5S ribosomal RNA |

21927 | 22019 | + | 93 | 152973854 | Bcer98_R0006 | - | 08 Ser tRNA
|

25353 | 25456 | + | 104 | 152973854 | Bcer98_R0007 | - | SRP RNA; RNA component of signal recognition particle |

29256 | 30799 | + | 1544 | 152973854 | Bcer98_R0008 | - | 16S ribosomal RNA |

30934 | 31010 | + | 77 | 152973854 | Bcer98_R0009 | - | 14 Ile tRNA
|

31019 | 31094 | + | 76 | 152973854 | Bcer98_R0010 | - | 02 Ala tRNA
|

31184 | 34090 | + | 2907 | 152973854 | Bcer98_R0011 | - | 23S ribosomal RNA |

34187 | 34301 | + | 115 | 152973854 | Bcer98_R0012 | - | 5S ribosomal RNA |

64784 | 64857 | + | 74 | 152973854 | Bcer98_R0013 | - | 16 Met tRNA
|

64872 | 64943 | + | 72 | 152973854 | Bcer98_R0014 | - | 04 Glu tRNA
|

82758 | 84301 | + | 1544 | 152973854 | Bcer98_R0015 | - | 16S ribosomal RNA |

84563 | 87469 | + | 2907 | 152973854 | Bcer98_R0016 | - | 23S ribosomal RNA |

87618 | 87732 | + | 115 | 152973854 | Bcer98_R0017 | - | 5S ribosomal RNA |

87736 | 87811 | + | 76 | 152973854 | Bcer98_R0018 | - | 13 Val tRNA
|

87817 | 87892 | + | 76 | 152973854 | Bcer98_R0019 | - | 12 Thr tRNA
|

87903 | 87978 | + | 76 | 152973854 | Bcer98_R0020 | - | 10 Lys tRNA
|

87993 | 88073 | + | 81 | 152973854 | Bcer98_R0021 | - | 15 Leu tRNA
|

88103 | 88177 | + | 75 | 152973854 | Bcer98_R0022 | - | 01 Gly tRNA
|

88188 | 88276 | + | 89 | 152973854 | Bcer98_R0023 | - | 15 Leu tRNA
|

88280 | 88353 | + | 74 | 152973854 | Bcer98_R0024 | - | 11 Arg tRNA
|

88362 | 88435 | + | 74 | 152973854 | Bcer98_R0025 | - | 03 Pro tRNA
|

88446 | 88521 | + | 76 | 152973854 | Bcer98_R0026 | - | 02 Ala tRNA
|

88601 | 90144 | + | 1544 | 152973854 | Bcer98_R0027 | - | 16S ribosomal RNA |

90405 | 93311 | + | 2907 | 152973854 | Bcer98_R0028 | - | 23S ribosomal RNA |

93408 | 93522 | + | 115 | 152973854 | Bcer98_R0029 | - | 5S ribosomal RNA |

151867 | 153410 | + | 1544 | 152973854 | Bcer98_R0030 | - | 16S ribosomal RNA |

153672 | 156578 | + | 2907 | 152973854 | Bcer98_R0031 | - | 23S ribosomal RNA |

156728 | 156842 | + | 115 | 152973854 | Bcer98_R0032 | - | 5S ribosomal RNA |

156850 | 156924 | + | 75 | 152973854 | Bcer98_R0033 | - | 07 Asn tRNA
|

156929 | 157001 | + | 73 | 152973854 | Bcer98_R0034 | - | 12 Thr tRNA
|

157025 | 157099 | + | 75 | 152973854 | Bcer98_R0035 | - | 04 Glu tRNA
|

157105 | 157180 | + | 76 | 152973854 | Bcer98_R0036 | - | 13 Val tRNA
|

157190 | 157273 | + | 84 | 152973854 | Bcer98_R0037 | - | 18 Tyr tRNA
|

157337 | 157411 | + | 75 | 152973854 | Bcer98_R0038 | - | 05 Gln tRNA
|

157417 | 157492 | + | 76 | 152973854 | Bcer98_R0039 | - | 10 Lys tRNA
|

157498 | 157569 | + | 72 | 152973854 | Bcer98_R0040 | - | 01 Gly tRNA
|

157580 | 157652 | + | 73 | 152973854 | Bcer98_R0041 | - | 02 Ala tRNA
|

255339 | 255410 | + | 72 | 152973854 | Bcer98_R0042 | - | 07 Asn tRNA
|

255417 | 255507 | + | 91 | 152973854 | Bcer98_R0043 | - | 08 Ser tRNA
|

255514 | 255588 | + | 75 | 152973854 | Bcer98_R0044 | - | 04 Glu tRNA
|

255594 | 255669 | + | 76 | 152973854 | Bcer98_R0045 | - | 13 Val tRNA
|

255705 | 255780 | + | 76 | 152973854 | Bcer98_R0046 | - | 06 Asp tRNA
|

255855 | 255929 | + | 75 | 152973854 | Bcer98_R0047 | - | 05 Gln tRNA
|

255935 | 256007 | + | 73 | 152973854 | Bcer98_R0048 | - | 10 Lys tRNA
|

256023 | 256103 | + | 81 | 152973854 | Bcer98_R0049 | - | 15 Leu tRNA
|

256107 | 256192 | + | 86 | 152973854 | Bcer98_R0050 | - | 15 Leu tRNA
|

256284 | 256360 | + | 77 | 152973854 | Bcer98_R0051 | - | 11 Arg tRNA
|

256365 | 256441 | + | 77 | 152973854 | Bcer98_R0052 | - | 03 Pro tRNA
|

256443 | 256513 | + | 71 | 152973854 | Bcer98_R0053 | - | 01 Gly tRNA
|

256593 | 258136 | + | 1544 | 152973854 | Bcer98_R0054 | - | 16S ribosomal RNA |

258398 | 261304 | + | 2907 | 152973854 | Bcer98_R0055 | - | 23S ribosomal RNA |

261401 | 261515 | + | 115 | 152973854 | Bcer98_R0056 | - | 5S ribosomal RNA |

261525 | 261601 | + | 77 | 152973854 | Bcer98_R0057 | - | 16 Met tRNA
|

261605 | 261680 | + | 76 | 152973854 | Bcer98_R0058 | - | 06 Asp tRNA
|

277345 | 278888 | + | 1544 | 152973854 | Bcer98_R0059 | - | 16S ribosomal RNA |

279156 | 282063 | + | 2908 | 152973854 | Bcer98_R0060 | - | 23S ribosomal RNA |

282161 | 282275 | + | 115 | 152973854 | Bcer98_R0061 | - | 5S ribosomal RNA |

285014 | 286557 | + | 1544 | 152973854 | Bcer98_R0062 | - | 16S ribosomal RNA |

286819 | 289726 | + | 2908 | 152973854 | Bcer98_R0063 | - | 23S ribosomal RNA |

289824 | 289938 | + | 115 | 152973854 | Bcer98_R0064 | - | 5S ribosomal RNA |

295269 | 296812 | + | 1544 | 152973854 | Bcer98_R0065 | - | 16S ribosomal RNA |

297075 | 299981 | + | 2907 | 152973854 | Bcer98_R0066 | - | 23S ribosomal RNA |

300078 | 300192 | + | 115 | 152973854 | Bcer98_R0067 | - | 5S ribosomal RNA |

302785 | 304328 | + | 1544 | 152973854 | Bcer98_R0068 | - | 16S ribosomal RNA |

304590 | 307497 | + | 2908 | 152973854 | Bcer98_R0069 | - | 23S ribosomal RNA |

307595 | 307709 | + | 115 | 152973854 | Bcer98_R0070 | - | 5S ribosomal RNA |

515522 | 517065 | + | 1544 | 152973854 | Bcer98_R0071 | - | 16S ribosomal RNA |

517327 | 520233 | + | 2907 | 152973854 | Bcer98_R0072 | - | 23S ribosomal RNA |

520387 | 520501 | + | 115 | 152973854 | Bcer98_R0073 | - | 5S ribosomal RNA |

520509 | 520583 | + | 75 | 152973854 | Bcer98_R0074 | - | 07 Asn tRNA
|

520589 | 520680 | + | 92 | 152973854 | Bcer98_R0075 | - | 08 Ser tRNA
|

520693 | 520767 | + | 75 | 152973854 | Bcer98_R0076 | - | 04 Glu tRNA
|

520773 | 520848 | + | 76 | 152973854 | Bcer98_R0077 | - | 13 Val tRNA
|

520872 | 520948 | + | 77 | 152973854 | Bcer98_R0078 | - | 16 Met tRNA
|

520952 | 521027 | + | 76 | 152973854 | Bcer98_R0079 | - | 06 Asp tRNA
|

521036 | 521111 | + | 76 | 152973854 | Bcer98_R0080 | - | 17 Phe tRNA
|

521126 | 521201 | + | 76 | 152973854 | Bcer98_R0081 | - | 12 Thr tRNA
|

521211 | 521294 | + | 84 | 152973854 | Bcer98_R0082 | - | 18 Tyr tRNA
|

521302 | 521375 | + | 74 | 152973854 | Bcer98_R0083 | - | 20 Trp tRNA
|

521386 | 521461 | + | 76 | 152973854 | Bcer98_R0084 | - | 09 His tRNA
|

521575 | 521649 | + | 75 | 152973854 | Bcer98_R0085 | - | 05 Gln tRNA
|

521654 | 521728 | + | 75 | 152973854 | Bcer98_R0086 | - | 01 Gly tRNA
|

521739 | 521809 | + | 71 | 152973854 | Bcer98_R0087 | - | 19 Cys tRNA
|

521821 | 521902 | + | 82 | 152973854 | Bcer98_R0088 | - | 15 Leu tRNA
|

529172 | 529245 | + | 74 | 152973854 | Bcer98_R0089 | - | 01 Gly tRNA
|

691784 | 693327 | + | 1544 | 152973854 | Bcer98_R0090 | - | 16S ribosomal RNA |

693589 | 696495 | + | 2907 | 152973854 | Bcer98_R0091 | - | 23S ribosomal RNA |

696722 | 696836 | + | 115 | 152973854 | Bcer98_R0092 | - | 5S ribosomal RNA |

696840 | 696915 | + | 76 | 152973854 | Bcer98_R0093 | - | 13 Val tRNA
|

696925 | 697008 | + | 84 | 152973854 | Bcer98_R0094 | - | 18 Tyr tRNA
|

697019 | 697093 | + | 75 | 152973854 | Bcer98_R0095 | - | 05 Gln tRNA
|

697099 | 697174 | + | 76 | 152973854 | Bcer98_R0096 | - | 10 Lys tRNA
|

697188 | 697268 | + | 81 | 152973854 | Bcer98_R0097 | - | 15 Leu tRNA
|

697298 | 697372 | + | 75 | 152973854 | Bcer98_R0098 | - | 01 Gly tRNA
|

697383 | 697471 | + | 89 | 152973854 | Bcer98_R0099 | - | 15 Leu tRNA
|

697475 | 697551 | + | 77 | 152973854 | Bcer98_R0100 | - | 11 Arg tRNA
|

697556 | 697629 | + | 74 | 152973854 | Bcer98_R0101 | - | 03 Pro tRNA
|

697640 | 697712 | + | 73 | 152973854 | Bcer98_R0102 | - | 02 Ala tRNA
|

697727 | 697819 | + | 93 | 152973854 | Bcer98_R0103 | - | 08 Ser tRNA
|

697879 | 697968 | + | 90 | 152973854 | Bcer98_R0104 | - | 08 Ser tRNA
|

697988 | 698064 | + | 77 | 152973854 | Bcer98_R0105 | - | 16 Met tRNA
|

698068 | 698143 | + | 76 | 152973854 | Bcer98_R0106 | - | 06 Asp tRNA
|

698152 | 698227 | + | 76 | 152973854 | Bcer98_R0107 | - | 17 Phe tRNA
|

698242 | 698314 | + | 73 | 152973854 | Bcer98_R0108 | - | 12 Thr tRNA
|

698321 | 698391 | + | 71 | 152973854 | Bcer98_R0109 | - | 20 Trp tRNA
|

698403 | 698479 | + | 77 | 152973854 | Bcer98_R0110 | - | 14 Ile tRNA
|

698486 | 698560 | + | 75 | 152973854 | Bcer98_R0111 | - | 07 Asn tRNA
|

698562 | 698633 | + | 72 | 152973854 | Bcer98_R0112 | - | 04 Glu tRNA
|

1112860 | 1112932 | - | 73 | 152973854 | Bcer98_R0113 | - | 13 Val tRNA
|

1387173 | 1387525 | + | 353 | 152973854 | Bcer98_R0114 | - | RNA component of RNaseP |

3053375 | 3053448 | - | 74 | 152973854 | Bcer98_R0115 | - | 16 Met tRNA
|

3270012 | 3270088 | - | 77 | 152973854 | Bcer98_R0116 | - | 11 Arg tRNA
|

3270090 | 3270163 | - | 74 | 152973854 | Bcer98_R0117 | - | 01 Gly tRNA
|

3569879 | 3569950 | - | 72 | 152973854 | Bcer98_R0118 | - | 04 Glu tRNA
|

3569958 | 3570048 | - | 91 | 152973854 | Bcer98_R0119 | - | 08 Ser tRNA
|

3570053 | 3570127 | - | 75 | 152973854 | Bcer98_R0120 | - | 07 Asn tRNA
|

3570132 | 3570208 | - | 77 | 152973854 | Bcer98_R0121 | - | 14 Ile tRNA
|

3570220 | 3570290 | - | 71 | 152973854 | Bcer98_R0122 | - | 01 Gly tRNA
|

3570304 | 3570379 | - | 76 | 152973854 | Bcer98_R0123 | - | 10 Lys tRNA
|

3570390 | 3570465 | - | 76 | 152973854 | Bcer98_R0124 | - | 12 Thr tRNA
|

3570480 | 3570555 | - | 76 | 152973854 | Bcer98_R0125 | - | 17 Phe tRNA
|

3570565 | 3570640 | - | 76 | 152973854 | Bcer98_R0126 | - | 06 Asp tRNA
|

3570642 | 3570718 | - | 77 | 152973854 | Bcer98_R0127 | - | 16 Met tRNA
|

3570738 | 3570830 | - | 93 | 152973854 | Bcer98_R0128 | - | 08 Ser tRNA
|

3570848 | 3570924 | - | 77 | 152973854 | Bcer98_R0129 | - | 16 Met tRNA
|

3570929 | 3571005 | - | 77 | 152973854 | Bcer98_R0130 | - | 16 Met tRNA
|

3571023 | 3571095 | - | 73 | 152973854 | Bcer98_R0131 | - | 02 Ala tRNA
|

3571110 | 3571183 | - | 74 | 152973854 | Bcer98_R0132 | - | 03 Pro tRNA
|

3571192 | 3571265 | - | 74 | 152973854 | Bcer98_R0133 | - | 11 Arg tRNA
|

3571269 | 3571357 | - | 89 | 152973854 | Bcer98_R0134 | - | 15 Leu tRNA
|

3571368 | 3571442 | - | 75 | 152973854 | Bcer98_R0135 | - | 01 Gly tRNA
|

3571472 | 3571552 | - | 81 | 152973854 | Bcer98_R0136 | - | 15 Leu tRNA
|

3571571 | 3571646 | - | 76 | 152973854 | Bcer98_R0137 | - | 09 His tRNA
|

3571656 | 3571731 | - | 76 | 152973854 | Bcer98_R0138 | - | 12 Thr tRNA
|

3571737 | 3571812 | - | 76 | 152973854 | Bcer98_R0139 | - | 13 Val tRNA
|

3571816 | 3571930 | - | 115 | 152973854 | Bcer98_R0140 | - | 5S ribosomal RNA |

3572079 | 3574985 | - | 2907 | 152973854 | Bcer98_R0141 | - | 23S ribosomal RNA |

3575247 | 3576790 | - | 1544 | 152973854 | Bcer98_R0142 | - | 16S ribosomal RNA |

3731017 | 3731374 | - | 358 | 152973854 | Bcer98_R0143 | - | tmRNA |

3746250 | 3746328 | - | 79 | 152973854 | Bcer98_R0144 | - | 11 Arg tRNA
|

4065917 | 4065989 | - | 73 | 152973854 | Bcer98_R0145 | - | 17 Phe tRNA
|

4066032 | 4066107 | - | 76 | 152973854 | Bcer98_R0146 | - | 06 Asp tRNA
|

4066120 | 4066191 | - | 72 | 152973854 | Bcer98_R0147 | - | 04 Glu tRNA
|

4066205 | 4066280 | - | 76 | 152973854 | Bcer98_R0148 | - | 10 Lys tRNA
|