Материалы:NC 002947

```
LOCUS NC_002947 6181863 bp DNA circular BCT 17-AUG-2006
DEFINITION Pseudomonas putida KT2440, complete genome.
ACCESSION NC_002947
VERSION NC_002947.3 GI:26986745
KEYWORDS .
SOURCE Pseudomonas putida KT2440
ORGANISM Pseudomonas putida KT2440
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6181863)
AUTHORS Nelson,K., Paulsen,I., Weinel,C., Dodson,R., Hilbert,H., Fouts,D.,
Gill,S., Pop,M., Martins Dos Santos,V., Holmes,M., Brinkac,L.,
Beanan,M., DeBoy,R., Daugherty,S., Kolonay,J., Madupu,R.,
Nelson,W., White,O., Peterson,J., Khouri,H., Hance,I., Lee,P.,
Holtzapple,E., Scanlan,D., Tran,K., Moazzez,A., Utterback,T.,
Rizzo,M., Lee,K., Kosack,D., Moestl,D., Wedler,H., Lauber,J.,
Hoheisel,J., Straetz,M., Heim,S., Kiewitz,C., Eisen,J., Timmis,K.,
Duesterhoft,A., Tummler,B. and Fraser,C.
TITLE Complete genome sequence and comparative analysis of the
metabolically versatile Pseudomonas putida KT2440
JOURNAL Environ. Microbiol. 4 (12), 799-808 (2002)
PUBMED 12534463
REFERENCE 2 (bases 1 to 6181863)
AUTHORS Nelson,K., Paulsen,I., Weinel,C., Dodson,R., Hilbert,H., Fouts,D.,
Gill,S., Pop,M., Martins Dos Santos,V., Holmes,M., Brinkac,L.,
Beanan,M., DeBoy,R., Daugherty,S., Kolonay,J., Madupu,R.,
Nelson,W., White,O., Peterson,J., Khouri,H., Hance,I., Lee,P.,
Holtzapple,E., Scanlan,D., Tran,K., Moazzez,A., Utterback,T.,
Rizzo,M., Lee,K., Kosack,D., Moestl,D., Wedler,H., Lauber,J.,
Hoheisel,J., Straetz,M., Heim,S., Kiewitz,C., Eisen,J., Timmis,K.,
Duesterhoft,A., Tummler,B. and Fraser,C.
TITLE Direct Submission
JOURNAL Submitted (05-NOV-2002) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
REFERENCE 3 (bases 1 to 6181863)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE015451.
On Dec 16, 2002 this sequence version replaced gi:21264309.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

171387 | 172904 | + | 1518 | 26986745 | PP_16SA | - | 16S ribosomal RNA |

173201 | 176102 | + | 2902 | 26986745 | PP_23SA | - | 23S ribosomal RNA |

176235 | 176354 | + | 120 | 26986745 | PP_5SA | - | 5S ribosomal RNA |

176817 | 178334 | + | 1518 | 26986745 | PP_16SB | - | 16S ribosomal RNA |

178631 | 181532 | + | 2902 | 26986745 | PP_23SB | - | 23S ribosomal RNA |

181665 | 181784 | + | 120 | 26986745 | PP_r01 | - | 5S ribosomal RNA |

181890 | 182009 | + | 120 | 26986745 | PP_5SB | - | 5S ribosomal RNA |

255281 | 255354 | - | 74 | 26986745 | PP_t01 | - | 11 Arg tRNA
|

334974 | 335046 | - | 73 | 26986745 | PP_t02 | - | 12 Thr tRNA
|

344101 | 344173 | - | 73 | 26986745 | PP_t03 | - | 17 Phe tRNA
|

467122 | 467195 | - | 74 | 26986745 | PP_t04 | - | 16 Met tRNA
|

524947 | 526464 | + | 1518 | 26986745 | PP_16SC | - | 16S ribosomal RNA |

526761 | 529662 | + | 2902 | 26986745 | PP_23SC | - | 23S ribosomal RNA |

529782 | 529901 | + | 120 | 26986745 | PP_5SC | - | 5S ribosomal RNA |

532369 | 532449 | + | 81 | 26986745 | PP_t05 | - | 18 Tyr tRNA
|

532477 | 532547 | + | 71 | 26986745 | PP_t06 | - | 01 Gly tRNA
|

532580 | 532652 | + | 73 | 26986745 | PP_t07 | - | 12 Thr tRNA
|

533982 | 534054 | + | 73 | 26986745 | PP_t08 | - | 20 Trp tRNA
|

697822 | 699339 | + | 1518 | 26986745 | PP_16SD | - | 16S ribosomal RNA |

699429 | 699502 | + | 74 | 26986745 | PP_t09 | - | 14 Ile tRNA
|

699530 | 699602 | + | 73 | 26986745 | PP_t10 | - | 02 Ala tRNA
|

699849 | 702750 | + | 2902 | 26986745 | PP_23SD | - | 23S ribosomal RNA |

702882 | 703001 | + | 120 | 26986745 | PP_5SD | - | 5S ribosomal RNA |

733386 | 733458 | + | 73 | 26986745 | PP_t11 | - | 07 Asn tRNA
|

733466 | 733539 | + | 74 | 26986745 | PP_t12 | - | 03 Pro tRNA
|

733549 | 733621 | + | 73 | 26986745 | PP_t13 | - | 10 Lys tRNA
|

733671 | 733744 | + | 74 | 26986745 | PP_t14 | - | 03 Pro tRNA
|

733753 | 733825 | + | 73 | 26986745 | PP_t15 | - | 10 Lys tRNA
|

741323 | 741395 | + | 73 | 26986745 | PP_t16 | - | 12 Thr tRNA
|

813225 | 813298 | - | 74 | 26986745 | PP_t17 | - | 16 Met tRNA
|

839747 | 839818 | - | 72 | 26986745 | PP_t18 | - | 05 Gln tRNA
|

968899 | 968980 | - | 82 | 26986745 | PP_t19 | - | 15 Leu tRNA
|

1325501 | 1327018 | + | 1518 | 26986745 | PP_16SE | - | 16S ribosomal RNA |

1327315 | 1330216 | + | 2902 | 26986745 | PP_23SE | - | 23S ribosomal RNA |

1330348 | 1330467 | + | 120 | 26986745 | PP_5SE | - | 5S ribosomal RNA |

1380537 | 1380610 | - | 74 | 26986745 | PP_t20 | - | 16 Met tRNA
|

1380748 | 1380821 | - | 74 | 26986745 | PP_t21 | - | 16 Met tRNA
|

1380959 | 1381032 | - | 74 | 26986745 | PP_t22 | - | 16 Met tRNA
|

1402404 | 1402476 | + | 73 | 26986745 | PP_t23 | - | 10 Lys tRNA
|

1418342 | 1418428 | + | 87 | 26986745 | PP_t24 | - | |

1606460 | 1606530 | - | 71 | 26986745 | PP_t25 | - | 01 Gly tRNA
|

1898426 | 1898498 | + | 73 | 26986745 | PP_t26 | - | 13 Val tRNA
|

1898515 | 1898588 | + | 74 | 26986745 | PP_t27 | - | 06 Asp tRNA
|

1898762 | 1898834 | + | 73 | 26986745 | PP_t28 | - | 13 Val tRNA
|

1898851 | 1898924 | + | 74 | 26986745 | PP_t29 | - | 06 Asp tRNA
|

2069061 | 2069147 | + | 87 | 26986745 | PP_t30 | - | 08 Ser tRNA
|

2102637 | 2102709 | + | 73 | 26986745 | PP_t31 | - | 04 Glu tRNA
|

2102715 | 2102787 | + | 73 | 26986745 | PP_t32 | - | 01 Gly tRNA
|

2102883 | 2102955 | + | 73 | 26986745 | PP_t33 | - | 04 Glu tRNA
|

2102962 | 2103034 | + | 73 | 26986745 | PP_t34 | - | 01 Gly tRNA
|

2103123 | 2103195 | + | 73 | 26986745 | PP_t35 | - | 01 Gly tRNA
|

2233271 | 2233343 | - | 73 | 26986745 | PP_t36 | - | 07 Asn tRNA
|

2241531 | 2241603 | + | 73 | 26986745 | PP_t37 | - | 02 Ala tRNA
|

2241679 | 2241751 | + | 73 | 26986745 | PP_t38 | - | 04 Glu tRNA
|

2241806 | 2241878 | + | 73 | 26986745 | PP_t39 | - | 02 Ala tRNA
|

2241924 | 2241996 | + | 73 | 26986745 | PP_t40 | - | 04 Glu tRNA
|

2242061 | 2242133 | + | 73 | 26986745 | PP_t41 | - | 02 Ala tRNA
|

2242179 | 2242251 | + | 73 | 26986745 | PP_t42 | - | 04 Glu tRNA
|

2271396 | 2271468 | + | 73 | 26986745 | PP_t43 | - | 13 Val tRNA
|

2271537 | 2271610 | + | 74 | 26986745 | PP_t44 | - | 06 Asp tRNA
|

2271713 | 2271786 | + | 74 | 26986745 | PP_t45 | - | 06 Asp tRNA
|

2271931 | 2272004 | + | 74 | 26986745 | PP_t46 | - | 06 Asp tRNA
|

2420624 | 2420697 | - | 74 | 26986745 | PP_t47 | - | 03 Pro tRNA
|

2548687 | 2550204 | + | 1518 | 26986745 | PP_16SF | - | 16S ribosomal RNA |

2550294 | 2550367 | + | 74 | 26986745 | PP_t48 | - | 14 Ile tRNA
|

2550395 | 2550467 | + | 73 | 26986745 | PP_t49 | - | 02 Ala tRNA
|

2550714 | 2553615 | + | 2902 | 26986745 | PP_23SF | - | 23S ribosomal RNA |

2553747 | 2553866 | + | 120 | 26986745 | PP_5SF | - | 5S ribosomal RNA |

2585761 | 2585834 | + | 74 | 26986745 | PP_t50 | - | 11 Arg tRNA
|

2585879 | 2585951 | + | 73 | 26986745 | PP_t51 | - | 09 His tRNA
|

2586007 | 2586088 | + | 82 | 26986745 | PP_t52 | - | 15 Leu tRNA
|

2626119 | 2626191 | + | 73 | 26986745 | PP_t53 | - | 09 His tRNA
|

2685139 | 2685210 | + | 72 | 26986745 | PP_t54 | - | 05 Gln tRNA
|

2796488 | 2796561 | + | 74 | 26986745 | PP_t55 | - | 13 Val tRNA
|

2796737 | 2796810 | + | 74 | 26986745 | PP_t56 | - | 13 Val tRNA
|

2817001 | 2817074 | + | 74 | 26986745 | PP_t57 | - | 03 Pro tRNA
|

4361679 | 4361760 | + | 82 | 26986745 | PP_t58 | - | 15 Leu tRNA
|

4427519 | 4427589 | - | 71 | 26986745 | PP_t59 | - | 19 Cys tRNA
|

4501318 | 4501402 | - | 85 | 26986745 | PP_t60 | - | 08 Ser tRNA
|

4632553 | 4632625 | - | 73 | 26986745 | PP_t61 | - | 01 Gly tRNA
|

5075554 | 5075625 | - | 72 | 26986745 | PP_t62 | - | 11 Arg tRNA
|

5075760 | 5075828 | - | 69 | 26986745 | PP_t63 | - | 11 Arg tRNA
|

5079153 | 5079226 | - | 74 | 26986745 | PP_t64 | - | 11 Arg tRNA
|

5079303 | 5079376 | - | 74 | 26986745 | PP_t65 | - | 11 Arg tRNA
|

5079454 | 5079527 | - | 74 | 26986745 | PP_t66 | - | 11 Arg tRNA
|

5079602 | 5079675 | - | 74 | 26986745 | PP_t67 | - | 11 Arg tRNA
|

5079785 | 5079872 | - | 88 | 26986745 | PP_t68 | - | 08 Ser tRNA
|

5307435 | 5307554 | - | 120 | 26986745 | PP_5SG | - | 5S ribosomal RNA |

5307686 | 5310587 | - | 2902 | 26986745 | PP_23SG | - | 23S ribosomal RNA |

5310825 | 5310897 | - | 73 | 26986745 | PP_t69 | - | 02 Ala tRNA
|

5310997 | 5311070 | - | 74 | 26986745 | PP_t70 | - | 14 Ile tRNA
|

5311162 | 5312679 | - | 1518 | 26986745 | PP_16SG | - | 16S ribosomal RNA |

5360918 | 5360991 | - | 74 | 26986745 | PP_t71 | - | 16 Met tRNA
|

5361095 | 5361177 | - | 83 | 26986745 | PP_t72 | - | 15 Leu tRNA
|

5549323 | 5549406 | + | 84 | 26986745 | PP_t73 | - | 15 Leu tRNA
|

5549498 | 5549581 | + | 84 | 26986745 | PP_t74 | - | 15 Leu tRNA
|