Материалы:NC 009616

LOCUS NC_009616 1915238 bp DNA circular BCT 29-JUN-2007 DEFINITION Thermosipho melanesiensis BI429, complete genome. ACCESSION NC_009616 VERSION NC_009616.1 GI:150019913 KEYWORDS . SOURCE Thermosipho melanesiensis BI429 ORGANISM Thermosipho melanesiensis BI429 Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermosipho. REFERENCE 1 (bases 1 to 1915238) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Thermosipho melanesiensis BI429 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1915238) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (29-JUN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1915238) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (25-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000716. URL -- http://www.jgi.doe.gov JGI Project ID: 4002279 Source DNA and bacteria available from Kenneth Noll (kenneth.noll@uconn.edu) Contacts: Kenneth Noll (kenneth.noll@uconn.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

22289 | 22366 | - | 78 | 150019913 | Tmel_R0001 | - | 06 Asp tRNA
|

22438 | 22515 | - | 78 | 150019913 | Tmel_R0002 | - | 06 Asp tRNA
|

45121 | 45478 | - | 358 | 150019913 | Tmel_R0003 | - | tmRNA |

45538 | 45625 | - | 88 | 150019913 | Tmel_R0004 | - | 15 Leu tRNA
|

57799 | 57874 | - | 76 | 150019913 | Tmel_R0005 | - | 02 Ala tRNA
|

119307 | 119382 | - | 76 | 150019913 | Tmel_R0006 | - | 02 Ala tRNA
|

125711 | 125787 | + | 77 | 150019913 | Tmel_R0007 | - | 03 Pro tRNA
|

125791 | 125866 | + | 76 | 150019913 | Tmel_R0008 | - | 01 Gly tRNA
|

125884 | 125960 | + | 77 | 150019913 | Tmel_R0009 | - | 11 Arg tRNA
|

125984 | 126059 | + | 76 | 150019913 | Tmel_R0010 | - | 09 His tRNA
|

126093 | 126169 | + | 77 | 150019913 | Tmel_R0011 | - | 11 Arg tRNA
|

208635 | 208711 | - | 77 | 150019913 | Tmel_R0012 | - | 16 Met tRNA
|

208742 | 208831 | - | 90 | 150019913 | Tmel_R0013 | - | 15 Leu tRNA
|

272808 | 272923 | - | 116 | 150019913 | Tmel_R0014 | - | 5S ribosomal RNA |

272962 | 275901 | - | 2940 | 150019913 | Tmel_R0015 | - | 23S ribosomal RNA |

275980 | 277338 | - | 1359 | 150019913 | Tmel_R0016 | - | 16S ribosomal RNA |

304049 | 304125 | - | 77 | 150019913 | Tmel_R0017 | - | 11 Arg tRNA
|

343693 | 343766 | - | 74 | 150019913 | Tmel_R0018 | - | 05 Gln tRNA
|

352505 | 352620 | - | 116 | 150019913 | Tmel_R0019 | - | 5S ribosomal RNA |

352659 | 355598 | - | 2940 | 150019913 | Tmel_R0020 | - | 23S ribosomal RNA |

355677 | 357035 | - | 1359 | 150019913 | Tmel_R0021 | - | 16S ribosomal RNA |

357666 | 357741 | - | 76 | 150019913 | Tmel_R0022 | - | 16 Met tRNA
|

371105 | 371180 | + | 76 | 150019913 | Tmel_R0023 | - | 07 Asn tRNA
|

387866 | 387941 | + | 76 | 150019913 | Tmel_R0024 | - | 12 Thr tRNA
|

405423 | 405498 | + | 76 | 150019913 | Tmel_R0025 | - | 07 Asn tRNA
|

588725 | 588810 | + | 86 | 150019913 | Tmel_R0026 | - | 08 Ser tRNA
|

637065 | 637180 | - | 116 | 150019913 | Tmel_R0027 | - | 5S ribosomal RNA |

637219 | 640158 | - | 2940 | 150019913 | Tmel_R0028 | - | 23S ribosomal RNA |

640199 | 640274 | - | 76 | 150019913 | Tmel_R0029 | - | 02 Ala tRNA
|

640279 | 640355 | - | 77 | 150019913 | Tmel_R0030 | - | 14 Ile tRNA
|

640404 | 641762 | - | 1359 | 150019913 | Tmel_R0031 | - | 16S ribosomal RNA |

642109 | 642224 | - | 116 | 150019913 | Tmel_R0032 | - | 5S ribosomal RNA |

642263 | 645202 | - | 2940 | 150019913 | Tmel_R0033 | - | 23S ribosomal RNA |

645243 | 645318 | - | 76 | 150019913 | Tmel_R0034 | - | 02 Ala tRNA
|

645323 | 645399 | - | 77 | 150019913 | Tmel_R0035 | - | 14 Ile tRNA
|

645448 | 646806 | - | 1359 | 150019913 | Tmel_R0036 | - | 16S ribosomal RNA |

654791 | 654867 | - | 77 | 150019913 | Tmel_R0037 | - | 11 Arg tRNA
|

654904 | 654993 | - | 90 | 150019913 | Tmel_R0038 | - | 08 Ser tRNA
|

665819 | 665907 | - | 89 | 150019913 | Tmel_R0039 | - | 15 Leu tRNA
|

677738 | 677814 | + | 77 | 150019913 | Tmel_R0040 | - | 19 Cys tRNA
|

677823 | 677898 | + | 76 | 150019913 | Tmel_R0041 | - | 16 Met tRNA
|

679035 | 679110 | + | 76 | 150019913 | Tmel_R0042 | - | 12 Thr tRNA
|

679120 | 679206 | + | 87 | 150019913 | Tmel_R0043 | - | 18 Tyr tRNA
|

679392 | 679467 | + | 76 | 150019913 | Tmel_R0044 | - | 20 Trp tRNA
|

682872 | 682946 | - | 75 | 150019913 | Tmel_R0045 | - | 01 Gly tRNA
|

682957 | 683043 | - | 87 | 150019913 | Tmel_R0046 | - | 15 Leu tRNA
|

683049 | 683124 | - | 76 | 150019913 | Tmel_R0047 | - | 10 Lys tRNA
|

891345 | 891421 | + | 77 | 150019913 | Tmel_R0048 | - | 03 Pro tRNA
|

913591 | 913667 | - | 77 | 150019913 | Tmel_R0049 | - | 12 Thr tRNA
|

961018 | 961092 | + | 75 | 150019913 | Tmel_R0050 | - | 04 Glu tRNA
|

961096 | 961170 | + | 75 | 150019913 | Tmel_R0051 | - | 11 Arg tRNA
|

961178 | 961253 | + | 76 | 150019913 | Tmel_R0052 | - | 10 Lys tRNA
|

983707 | 983781 | + | 75 | 150019913 | Tmel_R0053 | - | 13 Val tRNA
|

983796 | 983870 | + | 75 | 150019913 | Tmel_R0054 | - | 05 Gln tRNA
|

1257290 | 1257366 | + | 77 | 150019913 | Tmel_R0055 | - | 03 Pro tRNA
|

1281130 | 1281405 | - | 276 | 150019913 | Tmel_R0056 | - | RNase P class A |

1342233 | 1342319 | + | 87 | 150019913 | Tmel_R0057 | - | 15 Leu tRNA
|

1385737 | 1385841 | - | 105 | 150019913 | Tmel_R0058 | - | SRP RNA; RNA component of signal recognition particle |

1393329 | 1393416 | - | 88 | 150019913 | Tmel_R0059 | - | 08 Ser tRNA
|

1415230 | 1415320 | - | 91 | 150019913 | Tmel_R0060 | - | 08 Ser tRNA
|

1436794 | 1436869 | + | 76 | 150019913 | Tmel_R0061 | - | 04 Glu tRNA
|

1436875 | 1436949 | + | 75 | 150019913 | Tmel_R0062 | - | 13 Val tRNA
|

1436964 | 1437039 | + | 76 | 150019913 | Tmel_R0063 | - | 17 Phe tRNA
|

1562595 | 1562670 | + | 76 | 150019913 | Tmel_R0064 | - | 01 Gly tRNA
|

1837436 | 1837510 | + | 75 | 150019913 | Tmel_R0065 | - | 13 Val tRNA
|