Материалы:NC 008563

```
LOCUS NC_008563 5082025 bp DNA circular BCT 09-APR-2007
DEFINITION Escherichia coli APEC O1, complete genome.
ACCESSION NC_008563
VERSION NC_008563.1 GI:117622295
KEYWORDS .
SOURCE Escherichia coli APEC O1
ORGANISM Escherichia coli APEC O1
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 5082025)
AUTHORS Johnson,T.J., Kariyawasam,S., Wannemuehler,Y., Mangiamele,P.,
Johnson,S.J., Doetkott,C., Skyberg,J.A., Lynne,A.M., Johnson,J.R.
and Nolan,L.K.
TITLE The Genome Sequence of Avian Pathogenic Escherichia coli Strain
O1:K1:H7 Shares Strong Similarities with Human Extraintestinal
Pathogenic E. coli Genomes
JOURNAL J. Bacteriol. 189 (8), 3228-3236 (2007)
PUBMED 17293413
REFERENCE 2 (bases 1 to 5082025)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (08-NOV-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5082025)
AUTHORS Johnson,T.J. and Nolan,L.K.
TITLE Direct Submission
JOURNAL Submitted (14-SEP-2006) Veterinary Microbiology and Preventive
Medicine, Iowa State University, 1802 Elwood Drive, VMRI 2, Ames,
IA 50011, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000468.
Growth conditions for DNA isolation: 37C, 12 hr, LB broth. Strain
available upon request from authors Lisa Nolan or Tim Johnson,
email to: timjohns@iastate.edu.
COMPLETENESS: full length.
```



## Расположение РНК

в таблице нехватает 3 копий Ala tRNAGCA (коррекцию см. Ala tRNA)

в таблице нехватает 2 копий Ala tRNAGCC (коррекцию см. Ala tRNA)

в таблице нехватает 2 копий Met tRNAATG

+ в таблице нехватает 4 копий Met tRNAATG

+ в таблице нехватает 1 копий Met tRNAATG

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

81625 | 81712 | + | 88 | 117622295 | APECO1_5001 | - | 15 Leu tRNA
|

81741 | 81827 | + | 87 | 117622295 | APECO1_5002 | - | 15 Leu tRNA
|

81862 | 81948 | + | 87 | 117622295 | APECO1_5003 | - | 15 Leu tRNA
|

168882 | 168966 | - | 85 | 117622295 | APECO1_5004 | - | 15 Leu tRNA
|

228500 | 230053 | + | 1554 | 117622295 | APECO1_r01 | - | 16S ribosomal RNA |

230474 | 233387 | + | 2914 | 117622295 | APECO1_r02 | - | 23S ribosomal RNA |

233482 | 233605 | + | 124 | 117622295 | APECO1_r03 | - | 5S ribosomal RNA |

281831 | 281906 | - | 76 | 117622295 | APECO1_5005 | - | 01 Gly tRNA
|

281942 | 282017 | - | 76 | 117622295 | APECO1_5006 | - | 01 Gly tRNA
|

282054 | 282129 | - | 76 | 117622295 | APECO1_5007 | - | 01 Gly tRNA
|

311563 | 311638 | + | 76 | 117622295 | APECO1_5008 | - | 17 Phe tRNA
|

551657 | 551732 | - | 76 | 117622295 | APECO1_5009 | - | 04 Glu tRNA
|

584616 | 584691 | - | 76 | 117622295 | APECO1_5010 | - | 12 Thr tRNA
|

584698 | 584772 | - | 75 | 117622295 | APECO1_5011 | - | 01 Gly tRNA
|

584889 | 584973 | - | 85 | 117622295 | APECO1_5012 | - | 18 Tyr tRNA
|

584982 | 585057 | - | 76 | 117622295 | APECO1_5013 | - | 12 Thr tRNA
|

591850 | 591925 | - | 76 | 117622295 | APECO1_5014 | - | 04 Glu tRNA
|

726358 | 726433 | - | 76 | 117622295 | APECO1_5015 | - | 02 Ala tRNA
|

726476 | 726552 | - | 77 | 117622295 | APECO1_5016 | - | 14 Ile tRNA
|

806436 | 806512 | - | 77 | 117622295 | APECO1_5017 | - | 03 Pro tRNA
|

806555 | 806641 | - | 87 | 117622295 | APECO1_5018 | - | 15 Leu tRNA
|

806662 | 806737 | - | 76 | 117622295 | APECO1_5019 | - | 09 His tRNA
|

806796 | 806872 | - | 77 | 117622295 | APECO1_5020 | - | 11 Arg tRNA
|

841341 | 841416 | - | 76 | 117622295 | APECO1_5021 | - | 20 Trp tRNA
|

841425 | 841501 | - | 77 | 117622295 | APECO1_5022 | - | 06 Asp tRNA
|

844863 | 844938 | - | 76 | 117622295 | APECO1_5023 | - | 04 Glu tRNA
|

944853 | 944940 | + | 88 | 117622295 | APECO1_5024 | - | Sec tRNA |

1069456 | 1069532 | + | 77 | 117622295 | APECO1_5025 | - | 03 Pro tRNA
|

1360332 | 1360408 | + | 77 | 117622295 | APECO1_5026 | - | 14 Ile tRNA
|

1360451 | 1360526 | + | 76 | 117622295 | APECO1_5027 | - | 02 Ala tRNA
|

1363843 | 1363918 | + | 76 | 117622295 | APECO1_5028 | - | 12 Thr tRNA
|

1463313 | 1463399 | + | 87 | 117622295 | APECO1_5029 | - | 15 Leu tRNA
|

1467177 | 1467253 | + | 77 | 117622295 | APECO1_5030 | - | 16 Met tRNA
|

1561812 | 1561887 | - | 76 | 117622295 | APECO1_5031 | - | 16 Met tRNA
|

1773109 | 1773184 | - | 76 | 117622295 | APECO1_5032 | - | 17 Phe tRNA
|

1883202 | 1883275 | + | 74 | 117622295 | APECO1_5033 | - | 01 Gly tRNA
|

1961668 | 1961744 | - | 77 | 117622295 | APECO1_5034 | - | 16 Met tRNA
|

1961778 | 1961854 | - | 77 | 117622295 | APECO1_5035 | - | 16 Met tRNA
|

1961888 | 1961964 | - | 77 | 117622295 | APECO1_5036 | - | 16 Met tRNA
|

2085998 | 2086090 | + | 93 | 117622295 | APECO1_5037 | - | 08 Ser tRNA
|

2086094 | 2086170 | + | 77 | 117622295 | APECO1_5038 | - | 11 Arg tRNA
|

2086235 | 2086311 | + | 77 | 117622295 | APECO1_5039 | - | 11 Arg tRNA
|

2086375 | 2086451 | + | 77 | 117622295 | APECO1_5040 | - | 11 Arg tRNA
|

2086515 | 2086591 | + | 77 | 117622295 | APECO1_5041 | - | 11 Arg tRNA
|

2189439 | 2189515 | + | 77 | 117622295 | APECO1_5042 | - | 14 Ile tRNA
|

2189558 | 2189633 | + | 76 | 117622295 | APECO1_5043 | - | 02 Ala tRNA
|

2318714 | 2318790 | - | 77 | 117622295 | APECO1_5044 | - | 11 Arg tRNA
|

2429213 | 2429288 | - | 76 | 117622295 | APECO1_5045 | - | 10 Lys tRNA
|

2429293 | 2429368 | - | 76 | 117622295 | APECO1_5046 | - | 13 Val tRNA
|

2429415 | 2429490 | - | 76 | 117622295 | APECO1_5047 | - | 13 Val tRNA
|

2429535 | 2429610 | - | 76 | 117622295 | APECO1_5048 | - | 13 Val tRNA
|

2432309 | 2432384 | + | 76 | 117622295 | APECO1_5049 | - | 02 Ala tRNA
|

2432424 | 2432499 | + | 76 | 117622295 | APECO1_5050 | - | 02 Ala tRNA
|

2512937 | 2513011 | - | 75 | 117622295 | APECO1_5051 | - | 11 Arg tRNA
|

2683971 | 2684047 | - | 77 | 117622295 | APECO1_5052 | - | 03 Pro tRNA
|

2885264 | 2885387 | - | 124 | 117622295 | APECO1_r04 | - | 5S ribosomal RNA |

2885478 | 2888384 | - | 2907 | 117622295 | APECO1_r05 | - | 23S ribosomal RNA |

2888826 | 2890383 | - | 1558 | 117622295 | APECO1_r06 | - | 16S ribosomal RNA |

2943442 | 2943517 | - | 76 | 117622295 | APECO1_5053 | - | 07 Asn tRNA
|

2945851 | 2945926 | - | 76 | 117622295 | APECO1_5054 | - | 07 Asn tRNA
|

2947678 | 2947753 | + | 76 | 117622295 | APECO1_5055 | - | 07 Asn tRNA
|

2987569 | 2987644 | - | 76 | 117622295 | APECO1_5056 | - | 07 Asn tRNA
|

2988636 | 2988725 | + | 90 | 117622295 | APECO1_5057 | - | 08 Ser tRNA
|

3003287 | 3003362 | + | 76 | 117622295 | APECO1_5058 | - | 16 Met tRNA
|

3003364 | 3003440 | + | 77 | 117622295 | APECO1_5059 | - | 10 Lys tRNA
|

3003443 | 3003518 | + | 76 | 117622295 | APECO1_5060 | - | 12 Thr tRNA
|

3003522 | 3003596 | + | 75 | 117622295 | APECO1_5061 | - | 01 Gly tRNA
|

3081111 | 3081186 | + | 76 | 117622295 | APECO1_5062 | - | 01 Gly tRNA
|

3081327 | 3081413 | + | 87 | 117622295 | APECO1_5064 | - | 15 Leu tRNA
|

3314623 | 3314699 | - | 77 | 117622295 | APECO1_5065 | - | 13 Val tRNA
|

3314704 | 3314780 | - | 77 | 117622295 | APECO1_5066 | - | 13 Val tRNA
|

3594780 | 3594854 | - | 75 | 117622295 | APECO1_5067 | - | 01 Gly tRNA
|

3594858 | 3594933 | - | 76 | 117622295 | APECO1_5068 | - | 12 Thr tRNA
|

3714123 | 3714245 | - | 123 | 117622295 | APECO1_r07 | - | 5S ribosomal RNA |

3714368 | 3714491 | - | 124 | 117622295 | APECO1_r08 | - | 5S ribosomal RNA |

3714583 | 3717491 | - | 2909 | 117622295 | APECO1_r09 | - | 23S ribosomal RNA |

3717926 | 3719479 | - | 1554 | 117622295 | APECO1_r10 | - | 16S ribosomal RNA |

3734928 | 3735004 | - | 77 | 117622295 | APECO1_5069 | - | 11 Arg tRNA
|

3735102 | 3735177 | - | 76 | 117622295 | APECO1_5070 | - | 16 Met tRNA
|

3777257 | 3777341 | + | 85 | 117622295 | APECO1_5071 | - | 18 Tyr tRNA
|

3777375 | 3777459 | + | 85 | 117622295 | APECO1_5072 | - | 18 Tyr tRNA
|

3998194 | 3998281 | + | 88 | 117622295 | APECO1_5073 | - | 08 Ser tRNA
|

4050200 | 4050287 | + | 88 | 117622295 | APECO1_5074 | - | 08 Ser tRNA
|

4184849 | 4184936 | + | 88 | 117622295 | APECO1_5075 | - | 08 Ser tRNA
|

4235473 | 4237026 | + | 1554 | 117622295 | APECO1_r11 | - | 16S ribosomal RNA |

4237369 | 4240274 | + | 2906 | 117622295 | APECO1_r12 | - | 23S ribosomal RNA |

4240365 | 4240488 | + | 124 | 117622295 | APECO1_r13 | - | 5S ribosomal RNA |

4335453 | 4335528 | - | 76 | 117622295 | APECO1_5076 | - | 10 Lys tRNA
|

4335562 | 4335637 | - | 76 | 117622295 | APECO1_5077 | - | 10 Lys tRNA
|

4335686 | 4335761 | - | 76 | 117622295 | APECO1_5078 | - | 10 Lys tRNA
|

4335765 | 4335840 | - | 76 | 117622295 | APECO1_5079 | - | 13 Val tRNA
|

4335892 | 4335967 | - | 76 | 117622295 | APECO1_5080 | - | 10 Lys tRNA
|

4335970 | 4336045 | - | 76 | 117622295 | APECO1_5081 | - | 13 Val tRNA
|

4336081 | 4336156 | - | 76 | 117622295 | APECO1_5082 | - | 10 Lys tRNA
|

4353875 | 4355429 | + | 1555 | 117622295 | APECO1_r14 | - | 16S ribosomal RNA |

4355855 | 4358763 | + | 2909 | 117622295 | APECO1_r15 | - | 23S ribosomal RNA |

4358854 | 4358977 | + | 124 | 117622295 | APECO1_r16 | - | 5S ribosomal RNA |

4408517 | 4408593 | + | 77 | 117622295 | APECO1_5083 | - | 16 Met tRNA
|

4408604 | 4408688 | + | 85 | 117622295 | APECO1_5084 | - | 15 Leu tRNA
|

4408712 | 4408786 | + | 75 | 117622295 | APECO1_5085 | - | 05 Gln tRNA
|

4408821 | 4408895 | + | 75 | 117622295 | APECO1_5086 | - | 05 Gln tRNA
|

4408911 | 4408987 | + | 77 | 117622295 | APECO1_5087 | - | 16 Met tRNA
|

4409036 | 4409110 | + | 75 | 117622295 | APECO1_5088 | - | 05 Gln tRNA
|

4409148 | 4409222 | + | 75 | 117622295 | APECO1_5089 | - | 05 Gln tRNA
|

4488381 | 4489946 | + | 1566 | 117622295 | APECO1_r17 | - | 16S ribosomal RNA |

4490375 | 4493292 | + | 2918 | 117622295 | APECO1_r18 | - | 23S ribosomal RNA |

4493383 | 4493506 | + | 124 | 117622295 | APECO1_r19 | - | 5S ribosomal RNA |

4511322 | 4511398 | - | 77 | 117622295 | APECO1_5090 | - | 11 Arg tRNA
|

4528665 | 4530212 | + | 1548 | 117622295 | APECO1_r20 | - | 16S ribosomal RNA |

4530563 | 4533475 | + | 2913 | 117622295 | APECO1_r21 | - | 23S ribosomal RNA |

4533566 | 4533689 | + | 124 | 117622295 | APECO1_r22 | - | 5S ribosomal RNA |

4786906 | 4786981 | - | 76 | 117622295 | APECO1_5091 | - | 12 Thr tRNA
|

4840072 | 4840148 | - | 77 | 117622295 | APECO1_5092 | - | 06 Asp tRNA
|

4848295 | 4848371 | - | 77 | 117622295 | APECO1_5093 | - | 06 Asp tRNA
|

4851736 | 4851810 | - | 75 | 117622295 | APECO1_5094 | - | 02 Ala tRNA
|

4851823 | 4851899 | - | 77 | 117622295 | APECO1_5095 | - | 04 Glu tRNA
|