Материалы:NC 008600

```
LOCUS NC_008600 5257091 bp DNA circular BCT 18-APR-2007
DEFINITION Bacillus thuringiensis str. Al Hakam, complete genome.
ACCESSION NC_008600
VERSION NC_008600.1 GI:118475778
KEYWORDS .
SOURCE Bacillus thuringiensis str. Al Hakam
ORGANISM Bacillus thuringiensis str. Al Hakam
Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
cereus group.
REFERENCE 1 (bases 1 to 5257091)
AUTHORS Challacombe,J.F., Altherr,M.R., Xie,G., Bhotika,S.S., Brown,N.,
Bruce,D., Campbell,C.S., Campbell,M.L., Chen,J., Chertkov,O.,
Cleland,C., Dimitrijevic,M., Doggett,N.A., Fawcett,J.J.,
Glavina,T., Goodwin,L.A., Green,L.D., Han,C.S., Hill,K.K.,
Hitchcock,P., Jackson,P.J., Keim,P., Kewalramani,A.R., Longmire,J.,
Lucas,S., Malfatti,S., Martinez,D., McMurry,K., Meincke,L.J.,
Misra,M., Moseman,B.L., Mundt,M., Munk,A.C., Okinaka,R.T.,
Parson-Quintana,B., Reilly,L.P., Richardson,P., Robinson,D.L.,
Saunders,E., Tapia,R., Tesmer,J.G., Thayer,N., Thompson,L.S.,
Tice,H., Ticknor,L.O., Wills,P.L., Gilna,P. and Brettin,T.S.
TITLE The Complete Genome Sequence of Bacillus thuringiensis Al Hakam
JOURNAL J. Bacteriol. 189, 3680-3681 (2007)
PUBMED 17337577
REFERENCE 2 (bases 1 to 5257091)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (28-NOV-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 5257091)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Detter,J.C., Dalin,E., Tice,H., Pitluck,S., Chertkov,O.,
Goodwin,L.A., Han,l., Munk,A.C., Saunders,E., Brettin,T.S.,
Bruce,D., Challacombe,J.F., Gilna,P., Martinez,A.D., Misra,M.,
Tapia,R., Thayer,N.N., Xie,G., Brown,N., Green,L.D., Hill,K.K.,
Jackson,P.J., Longmire,J., Rubin,E. and Richardson,P.
TITLE Direct Submission
JOURNAL Submitted (14-NOV-2006) Joint Genome Institute, Department of
Energy, 2800 Mitchell Drive, Walnut Creek, Ca 94598, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000485.
Bacillus thuringiensis Al Hakam was collected at a suspected
bioweapons facility in Iraq by the United Nations Special
Commission (Genome differences that distinguish Bacillus anthracis
from Bacillus cereus and Bacillus thuringiensis. Radnedge, L,
Agron, PG Hill, KK, Jackson, PJ, Ticknor, LO, Keim, P, and
Andersen, GL. Appl Environ Microbiol 2003. 69:2755-64). Plasmid and
fosmid libraries were prepared at the Joint Genome Institute in Los
Alamos (JGI-LANL), NM. Shotgun sequencing was performed at the JGI
Production Genomics Facility (JGI-PGF) in Walnut Creek, CA. Draft
assemblies were based on 246217 total reads. All libraries provided
23x coverage of the genome. The Phred/Phrap/Consed software
package (www.phrap.com) was used for sequence assembly and quality
assessment. After the shotgun stage, reads were assembled with
parallel phrap (High Performance Software, LLC). Possible
mis-assemblies were corrected manually or by transposon bombing
(Epicentre Biotechnologies) of bridging clones. Gaps between
contigs were closed by editing in Consed, custom primer walk or PCR
amplification. A total of 25321 additional reactions were necessary
to close gaps and to raise the quality of the finished sequence.
The completed genome sequence of B. thuringiensis Al Hakam achieves
an average of 24-fold sequence coverage per base with error rate
less than 1 in 100,000. Gene predictions were obtained using
Glimmer and tRNAs were identified using tRNAScan-SE. Basic analysis
of the gene predictions was performed by comparing coding sequences
against the PFam, BLOCKS and Prodom databases. Gene definitions and
functional classes were added manually by a team of annotators at
JGI-LANL, using BLAST results in addition to information from the
basic analysis.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

9309 | 10762 | + | 1454 | 118475778 | BALH_r16S01 | - | 16S ribosomal RNA |

10993 | 11072 | + | 80 | 118475778 | BALH_tIle01 | - | 14 Ile tRNA
|

11078 | 11156 | + | 79 | 118475778 | BALH_tAla05 | - | 02 Ala tRNA
|

11249 | 14159 | + | 2911 | 118475778 | BALH_r23S01 | - | 23S ribosomal RNA |

14206 | 14324 | + | 119 | 118475778 | BALH_r5S01 | - | 5S ribosomal RNA |

21776 | 21871 | + | 96 | 118475778 | BALH_tSer05 | - | 08 Ser tRNA
|

29109 | 30562 | + | 1454 | 118475778 | BALH_r16S02 | - | 16S ribosomal RNA |

30793 | 30872 | + | 80 | 118475778 | BALH_tIle03 | - | 14 Ile tRNA
|

30878 | 30956 | + | 79 | 118475778 | BALH_tAla03 | - | 02 Ala tRNA
|

31048 | 33958 | + | 2911 | 118475778 | BALH_r23S02 | - | 23S ribosomal RNA |

34005 | 34123 | + | 119 | 118475778 | BALH_r5S02 | - | 5S ribosomal RNA |

64436 | 64512 | + | 77 | 118475778 | BALH_tMet02 | - | 16 Met tRNA
|

64523 | 64597 | + | 75 | 118475778 | BALH_tGlu06 | - | 04 Glu tRNA
|

82434 | 83887 | + | 1454 | 118475778 | BALH_r16S03 | - | 16S ribosomal RNA |

84146 | 87057 | + | 2912 | 118475778 | BALH_r23S03 | - | 23S ribosomal RNA |

87158 | 87271 | + | 114 | 118475778 | BALH_r5S03 | - | 5S ribosomal RNA |

87277 | 87355 | + | 79 | 118475778 | BALH_tVal07 | - | 13 Val tRNA
|

87357 | 87435 | + | 79 | 118475778 | BALH_tThr02 | - | 12 Thr tRNA
|

87446 | 87524 | + | 79 | 118475778 | BALH_tLys02 | - | 10 Lys tRNA
|

87537 | 87620 | + | 84 | 118475778 | BALH_tLeu08 | - | 15 Leu tRNA
|

87647 | 87724 | + | 78 | 118475778 | BALH_tGly03 | - | 01 Gly tRNA
|

87738 | 87829 | + | 92 | 118475778 | BALH_tLeu04 | - | 15 Leu tRNA
|

87830 | 87906 | + | 77 | 118475778 | BALH_tArg03 | - | 11 Arg tRNA
|

87912 | 87988 | + | 77 | 118475778 | BALH_tPro01 | - | 03 Pro tRNA
|

87995 | 88073 | + | 79 | 118475778 | BALH_tAla01 | - | 02 Ala tRNA
|

88149 | 89602 | + | 1454 | 118475778 | BALH_r16S04 | - | 16S ribosomal RNA |

89861 | 92771 | + | 2911 | 118475778 | BALH_r23S04 | - | 23S ribosomal RNA |

92817 | 92935 | + | 119 | 118475778 | BALH_r5S04 | - | 5S ribosomal RNA |

151215 | 152668 | + | 1454 | 118475778 | BALH_r16S05 | - | 16S ribosomal RNA |

152927 | 155837 | + | 2911 | 118475778 | BALH_r23S05 | - | 23S ribosomal RNA |

155923 | 156036 | + | 114 | 118475778 | BALH_r5S05 | - | 5S ribosomal RNA |

156046 | 156123 | + | 78 | 118475778 | BALH_tAsn02 | - | 07 Asn tRNA
|

156125 | 156200 | + | 76 | 118475778 | BALH_tThr05 | - | 12 Thr tRNA
|

156222 | 156299 | + | 78 | 118475778 | BALH_tGlu01 | - | 04 Glu tRNA
|

156302 | 156380 | + | 79 | 118475778 | BALH_tVal04 | - | 13 Val tRNA
|

156395 | 156481 | + | 87 | 118475778 | BALH_tTyr03 | - | 18 Tyr tRNA
|

156544 | 156621 | + | 78 | 118475778 | BALH_tGln02 | - | 05 Gln tRNA
|

156624 | 156702 | + | 79 | 118475778 | BALH_tLys03 | - | 10 Lys tRNA
|

156705 | 156779 | + | 75 | 118475778 | BALH_tGly01 | - | 01 Gly tRNA
|

156787 | 156862 | + | 76 | 118475778 | BALH_tAla02 | - | 02 Ala tRNA
|

257007 | 257084 | + | 78 | 118475778 | BALH_tAsn04 | - | 07 Asn tRNA
|

257085 | 257178 | + | 94 | 118475778 | BALH_tSer06 | - | 08 Ser tRNA
|

257184 | 257261 | + | 78 | 118475778 | BALH_tGlu02 | - | 04 Glu tRNA
|

257263 | 257341 | + | 79 | 118475778 | BALH_tVal03 | - | 13 Val tRNA
|

257385 | 257463 | + | 79 | 118475778 | BALH_tAsp02 | - | 06 Asp tRNA
|

257548 | 257625 | + | 78 | 118475778 | BALH_tGln03 | - | 05 Gln tRNA
|

257628 | 257703 | + | 76 | 118475778 | BALH_tLys06 | - | 10 Lys tRNA
|

257717 | 257805 | + | 89 | 118475778 | BALH_tLeu02 | - | 15 Leu tRNA
|

257898 | 257977 | + | 80 | 118475778 | BALH_tArg02 | - | 11 Arg tRNA
|

257979 | 258058 | + | 80 | 118475778 | BALH_tPro02 | - | 03 Pro tRNA
|

258057 | 258130 | + | 74 | 118475778 | BALH_tGly09 | - | 01 Gly tRNA
|

258204 | 259647 | + | 1444 | 118475778 | BALH_r16S06 | - | 16S ribosomal RNA |

259915 | 262825 | + | 2911 | 118475778 | BALH_r23S06 | - | 23S ribosomal RNA |

262872 | 262990 | + | 119 | 118475778 | BALH_r5S06 | - | 5S ribosomal RNA |

263000 | 263079 | + | 80 | 118475778 | BALH_tMet08 | - | 16 Met tRNA
|

263080 | 263158 | + | 79 | 118475778 | BALH_tAsp05 | - | 06 Asp tRNA
|

287745 | 289198 | + | 1454 | 118475778 | BALH_r16S07 | - | 16S ribosomal RNA |

289458 | 292369 | + | 2912 | 118475778 | BALH_r23S07 | - | 23S ribosomal RNA |

292415 | 292533 | + | 119 | 118475778 | BALH_r5S07 | - | 5S ribosomal RNA |

294991 | 296444 | + | 1454 | 118475778 | BALH_r16S08 | - | 16S ribosomal RNA |

296701 | 299611 | + | 2911 | 118475778 | BALH_r23S08 | - | 23S ribosomal RNA |

299658 | 299776 | + | 119 | 118475778 | BALH_r5S08 | - | 5S ribosomal RNA |

302303 | 303756 | + | 1454 | 118475778 | BALH_r16S09 | - | 16S ribosomal RNA |

304015 | 306925 | + | 2911 | 118475778 | BALH_r23S09 | - | 23S ribosomal RNA |

306973 | 307091 | + | 119 | 118475778 | BALH_r5S09 | - | 5S ribosomal RNA |

312307 | 313760 | + | 1454 | 118475778 | BALH_r16S10 | - | 16S ribosomal RNA |

314019 | 316929 | + | 2911 | 118475778 | BALH_r23S10 | - | 23S ribosomal RNA |

316977 | 317095 | + | 119 | 118475778 | BALH_r5S10 | - | 5S ribosomal RNA |

319482 | 320935 | + | 1454 | 118475778 | BALH_r16S11 | - | 16S ribosomal RNA |

321193 | 324103 | + | 2911 | 118475778 | BALH_r23S11 | - | 23S ribosomal RNA |

324151 | 324269 | + | 119 | 118475778 | BALH_r5S11 | - | 5S ribosomal RNA |

534455 | 535897 | + | 1443 | 118475778 | BALH_r16S12 | - | 16S ribosomal RNA |

536166 | 539078 | + | 2913 | 118475778 | BALH_r23S12 | - | 23S ribosomal RNA |

539178 | 539291 | + | 114 | 118475778 | BALH_r5S12 | - | 5S ribosomal RNA |

539300 | 539377 | + | 78 | 118475778 | BALH_tAsn05 | - | 07 Asn tRNA
|

539377 | 539471 | + | 95 | 118475778 | BALH_tSer01 | - | 08 Ser tRNA
|

539486 | 539563 | + | 78 | 118475778 | BALH_tGlu03 | - | 04 Glu tRNA
|

539566 | 539644 | + | 79 | 118475778 | BALH_tVal05 | - | 13 Val tRNA
|

539666 | 539745 | + | 80 | 118475778 | BALH_tMet01 | - | 16 Met tRNA
|

539746 | 539824 | + | 79 | 118475778 | BALH_tAsp03 | - | 06 Asp tRNA
|

539831 | 539909 | + | 79 | 118475778 | BALH_tPhe01 | - | 17 Phe tRNA
|

539925 | 540003 | + | 79 | 118475778 | BALH_tThr04 | - | 12 Thr tRNA
|

540011 | 540097 | + | 87 | 118475778 | BALH_tTyr01 | - | 18 Tyr tRNA
|

540102 | 540178 | + | 77 | 118475778 | BALH_tTrp02 | - | 20 Trp tRNA
|

540195 | 540273 | + | 79 | 118475778 | BALH_tHis02 | - | 09 His tRNA
|

540334 | 540411 | + | 78 | 118475778 | BALH_tGln01 | - | 05 Gln tRNA
|

540414 | 540491 | + | 78 | 118475778 | BALH_tGly05 | - | 01 Gly tRNA
|

540503 | 540576 | + | 74 | 118475778 | BALH_tCys01 | - | 19 Cys tRNA
|

540584 | 540671 | + | 88 | 118475778 | BALH_tLeu06 | - | 15 Leu tRNA
|

552778 | 552854 | + | 77 | 118475778 | BALH_tGly08 | - | 01 Gly tRNA
|

761982 | 763435 | + | 1454 | 118475778 | BALH_r16S13 | - | 16S ribosomal RNA |

763694 | 766604 | + | 2911 | 118475778 | BALH_r23S13 | - | 23S ribosomal RNA |

766706 | 766819 | + | 114 | 118475778 | BALH_r5S13 | - | 5S ribosomal RNA |

766825 | 766903 | + | 79 | 118475778 | BALH_tVal02 | - | 13 Val tRNA
|

766909 | 766995 | + | 87 | 118475778 | BALH_tTyr02 | - | 18 Tyr tRNA
|

767004 | 767081 | + | 78 | 118475778 | BALH_tGln04 | - | 05 Gln tRNA
|

767083 | 767161 | + | 79 | 118475778 | BALH_tLys04 | - | 10 Lys tRNA
|

767173 | 767256 | + | 84 | 118475778 | BALH_tLeu01 | - | 15 Leu tRNA
|

767283 | 767360 | + | 78 | 118475778 | BALH_tGly10 | - | 01 Gly tRNA
|

767374 | 767465 | + | 92 | 118475778 | BALH_tLeu05 | - | 15 Leu tRNA
|

767466 | 767542 | + | 77 | 118475778 | BALH_tArg01 | - | 11 Arg tRNA
|

767550 | 767626 | + | 77 | 118475778 | BALH_tPro04 | - | 03 Pro tRNA
|

767640 | 767715 | + | 76 | 118475778 | BALH_tAla06 | - | 02 Ala tRNA
|

767733 | 767828 | + | 96 | 118475778 | BALH_tSer03 | - | 08 Ser tRNA
|

767881 | 767976 | + | 96 | 118475778 | BALH_tSer07 | - | 08 Ser tRNA
|

768001 | 768080 | + | 80 | 118475778 | BALH_tMet07 | - | 16 Met tRNA
|

768081 | 768159 | + | 79 | 118475778 | BALH_tAsp04 | - | 06 Asp tRNA
|

768165 | 768243 | + | 79 | 118475778 | BALH_tPhe03 | - | 17 Phe tRNA
|

768250 | 768325 | + | 76 | 118475778 | BALH_tThr01 | - | 12 Thr tRNA
|

768329 | 768402 | + | 74 | 118475778 | BALH_tTrp01 | - | 20 Trp tRNA
|

768410 | 768489 | + | 80 | 118475778 | BALH_tIle04 | - | 14 Ile tRNA
|

768497 | 768574 | + | 78 | 118475778 | BALH_tAsn01 | - | 07 Asn tRNA
|

768573 | 768647 | + | 75 | 118475778 | BALH_tGlu04 | - | 04 Glu tRNA
|

1292399 | 1292474 | - | 76 | 118475778 | BALH_tVal01 | - | 13 Val tRNA
|

4081628 | 4081704 | - | 77 | 118475778 | BALH_tMet06 | - | 16 Met tRNA
|

4294665 | 4294741 | - | 77 | 118475778 | BALH_tGly02 | - | 01 Gly tRNA
|

4666220 | 4666294 | - | 75 | 118475778 | BALH_tGlu07 | - | 04 Glu tRNA
|

4666298 | 4666391 | - | 94 | 118475778 | BALH_tSer04 | - | 08 Ser tRNA
|

4666396 | 4666473 | - | 78 | 118475778 | BALH_tAsn03 | - | 07 Asn tRNA
|

4666478 | 4666557 | - | 80 | 118475778 | BALH_tIle02 | - | 14 Ile tRNA
|

4666565 | 4666638 | - | 74 | 118475778 | BALH_tGly07 | - | 01 Gly tRNA
|

4666649 | 4666727 | - | 79 | 118475778 | BALH_tLys05 | - | 10 Lys tRNA
|

4666735 | 4666813 | - | 79 | 118475778 | BALH_tThr03 | - | 12 Thr tRNA
|

4666825 | 4666903 | - | 79 | 118475778 | BALH_tPhe04 | - | 17 Phe tRNA
|

4666913 | 4666991 | - | 79 | 118475778 | BALH_tAsp01 | - | 06 Asp tRNA
|

4666990 | 4667069 | - | 80 | 118475778 | BALH_tMet04 | - | 16 Met tRNA
|

4667094 | 4667189 | - | 96 | 118475778 | BALH_tSer02 | - | 08 Ser tRNA
|

4667204 | 4667283 | - | 80 | 118475778 | BALH_tMet03 | - | 16 Met tRNA
|

4667285 | 4667364 | - | 80 | 118475778 | BALH_tMet05 | - | 16 Met tRNA
|

4667382 | 4667458 | - | 77 | 118475778 | BALH_tAla04 | - | 02 Ala tRNA
|

4667472 | 4667548 | - | 77 | 118475778 | BALH_tPro03 | - | 03 Pro tRNA
|

4667556 | 4667632 | - | 77 | 118475778 | BALH_tArg05 | - | 11 Arg tRNA
|

4667633 | 4667724 | - | 92 | 118475778 | BALH_tLeu03 | - | 15 Leu tRNA
|

4667738 | 4667815 | - | 78 | 118475778 | BALH_tGly06 | - | 01 Gly tRNA
|

4667842 | 4667925 | - | 84 | 118475778 | BALH_tLeu07 | - | 15 Leu tRNA
|

4667945 | 4668023 | - | 79 | 118475778 | BALH_tHis01 | - | 09 His tRNA
|

4668030 | 4668108 | - | 79 | 118475778 | BALH_tThr06 | - | 12 Thr tRNA
|

4668110 | 4668188 | - | 79 | 118475778 | BALH_tVal06 | - | 13 Val tRNA
|

4668193 | 4668306 | - | 114 | 118475778 | BALH_r5S14 | - | 5S ribosomal RNA |

4668407 | 4671317 | - | 2911 | 118475778 | BALH_r23S014 | - | 23S ribosomal RNA |

4671585 | 4673028 | - | 1444 | 118475778 | BALH_r16S14 | - | 16S ribosomal RNA |

4880556 | 4880634 | - | 79 | 118475778 | BALH_tArg04 | - | 11 Arg tRNA
|

5236468 | 5236543 | - | 76 | 118475778 | BALH_tPhe02 | - | 17 Phe tRNA
|

5236582 | 5236660 | - | 79 | 118475778 | BALH_tAsp06 | - | 06 Asp tRNA
|

5236679 | 5236753 | - | 75 | 118475778 | BALH_tGlu05 | - | 04 Glu tRNA
|

5236764 | 5236842 | - | 79 | 118475778 | BALH_tLys01 | - | 10 Lys tRNA
|