Материалы:NC 009428

LOCUS NC_009428 3217726 bp DNA circular BCT 21-JUN-2007 DEFINITION Rhodobacter sphaeroides ATCC 17025, complete genome. ACCESSION NC_009428 VERSION NC_009428.1 GI:146276058 KEYWORDS . SOURCE Rhodobacter sphaeroides ATCC 17025 ORGANISM Rhodobacter sphaeroides ATCC 17025 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter. REFERENCE 1 (bases 1 to 3217726) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Rhodobacter sphaeroides ATCC 17025 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3217726) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3217726) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (10-APR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000661. URL -- http://www.jgi.doe.gov JGI Project ID: 4000699 Source DNA and bacteria available from Samuel Kaplan (Samuel.Kaplan@uth.tmc.edu) Contacts: Paul Richardson (Microbes@cuba.jgi-psf.org) Samuel Kaplan (Samuel.Kaplan@uth.tmc.edu) Ronald C. Mackenzie (Ronald.C.Mackenzie@uth.tmc.edu) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). Additional Notes: This genome has an unresolved number of a 45kb repeat. We estimate that there are 2 copies of this repeat based on the large coverage by draft reads and multiple links of 35 and 6 kb libraries from unique to repeat. We don't have subclones that span this area from unique to unique. We could not produce long range PCR for this area. It is possible that this genome may be rearranged because of this 45 kb repeat. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

100952 | 101027 | + | 76 | 146276058 | Rsph17025_R0001 | - | 02 Ala tRNA
|

163765 | 163841 | + | 77 | 146276058 | Rsph17025_R0002 | - | 03 Pro tRNA
|

312778 | 312854 | + | 77 | 146276058 | Rsph17025_R0003 | - | 11 Arg tRNA
|

422206 | 422282 | + | 77 | 146276058 | Rsph17025_R0004 | - | 09 His tRNA
|

477468 | 477544 | - | 77 | 146276058 | Rsph17025_R0005 | - | 11 Arg tRNA
|

522942 | 523042 | - | 101 | 146276058 | Rsph17025_R0006 | - | SRP RNA; RNA component of signal recognition particle |

591700 | 591774 | - | 75 | 146276058 | Rsph17025_R0007 | - | 12 Thr tRNA
|

600425 | 600500 | + | 76 | 146276058 | Rsph17025_R0008 | - | 17 Phe tRNA
|

669210 | 669296 | + | 87 | 146276058 | Rsph17025_R0009 | - | 15 Leu tRNA
|

842089 | 842163 | + | 75 | 146276058 | Rsph17025_R0010 | - | 04 Glu tRNA
|

848920 | 848994 | - | 75 | 146276058 | Rsph17025_R0011 | - | 04 Glu tRNA
|

906177 | 906250 | + | 74 | 146276058 | Rsph17025_R0012 | - | 01 Gly tRNA
|

929780 | 929863 | + | 84 | 146276058 | Rsph17025_R0013 | - | 15 Leu tRNA
|

1089809 | 1089883 | + | 75 | 146276058 | Rsph17025_R0014 | - | 13 Val tRNA
|

1305837 | 1305927 | + | 91 | 146276058 | Rsph17025_R0015 | - | 08 Ser tRNA
|

1355467 | 1355542 | + | 76 | 146276058 | Rsph17025_R0016 | - | 02 Ala tRNA
|

1383135 | 1383219 | + | 85 | 146276058 | Rsph17025_R0017 | - | 15 Leu tRNA
|

1403236 | 1403309 | + | 74 | 146276058 | Rsph17025_R0018 | - | 19 Cys tRNA
|

1441592 | 1441668 | + | 77 | 146276058 | Rsph17025_R0019 | - | 11 Arg tRNA
|

1512266 | 1512340 | + | 75 | 146276058 | Rsph17025_R0020 | - | 12 Thr tRNA
|

1552603 | 1552677 | + | 75 | 146276058 | Rsph17025_R0021 | - | 05 Gln tRNA
|

1552767 | 1552841 | + | 75 | 146276058 | Rsph17025_R0022 | - | 05 Gln tRNA
|

1764088 | 1764162 | + | 75 | 146276058 | Rsph17025_R0023 | - | 01 Gly tRNA
|

1770068 | 1770143 | + | 76 | 146276058 | Rsph17025_R0024 | - | 13 Val tRNA
|

1850753 | 1850842 | + | 90 | 146276058 | Rsph17025_R0025 | - | 08 Ser tRNA
|

1913839 | 1913915 | - | 77 | 146276058 | Rsph17025_R0026 | - | 06 Asp tRNA
|

1913950 | 1914026 | - | 77 | 146276058 | Rsph17025_R0027 | - | 06 Asp tRNA
|

1959275 | 1959352 | + | 78 | 146276058 | Rsph17025_R0028 | - | 03 Pro tRNA
|

2112636 | 2112719 | + | 84 | 146276058 | Rsph17025_R0029 | - | 15 Leu tRNA
|

2166202 | 2166291 | - | 90 | 146276058 | Rsph17025_R0030 | - | 08 Ser tRNA
|

2259173 | 2259518 | - | 346 | 146276058 | Rsph17025_R0031 | - | RNA component of RNaseP |

2591284 | 2591359 | - | 76 | 146276058 | Rsph17025_R0032 | - | 20 Trp tRNA
|

2622537 | 2622612 | + | 76 | 146276058 | Rsph17025_R0033 | - | 11 Arg tRNA
|

2819993 | 2820077 | - | 85 | 146276058 | Rsph17025_R0034 | - | 15 Leu tRNA
|

2851659 | 2851733 | - | 75 | 146276058 | Rsph17025_R0035 | - | 13 Val tRNA
|

2863314 | 2864773 | + | 1460 | 146276058 | Rsph17025_R0036 | - | 16S ribosomal RNA |

2864994 | 2865070 | + | 77 | 146276058 | Rsph17025_R0037 | - | 14 Ile tRNA
|

2865157 | 2865232 | + | 76 | 146276058 | Rsph17025_R0038 | - | 02 Ala tRNA
|

2865476 | 2868396 | + | 2921 | 146276058 | Rsph17025_R0039 | - | 23S ribosomal RNA |

2868495 | 2868612 | + | 118 | 146276058 | Rsph17025_R0040 | - | 5S ribosomal RNA |

2868682 | 2868758 | + | 77 | 146276058 | Rsph17025_R0041 | - | 16 Met tRNA
|

2968016 | 2968091 | - | 76 | 146276058 | Rsph17025_R0042 | - | 12 Thr tRNA
|

3044536 | 3044610 | - | 75 | 146276058 | Rsph17025_R0043 | - | 10 Lys tRNA
|

3069597 | 3069673 | + | 77 | 146276058 | Rsph17025_R0044 | - | 03 Pro tRNA
|

3137299 | 3137374 | - | 76 | 146276058 | Rsph17025_R0045 | - | 16 Met tRNA
|