Материалы:NC 008782

LOCUS NC_008782 4448856 bp DNA circular BCT 11-JAN-2007 DEFINITION Acidovorax sp. JS42, complete genome. ACCESSION NC_008782 VERSION NC_008782.1 GI:121592436 KEYWORDS . SOURCE Acidovorax sp. JS42 ORGANISM Acidovorax sp. JS42 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax. REFERENCE 1 (bases 1 to 4448856) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromosome1 of Acidovorax sp. JS42 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4448856) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (10-JAN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4448856) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000539. URL -- http://www.jgi.doe.gov JGI Project ID: 4001426 Source DNA and bacteria available from David Stahl (dastahl@u.washington.edu) Contacts: David Stahl (dastahl@u.washington.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

333762 | 333837 | + | 76 | 121592436 | Ajs_R0001 | - | 11 Arg tRNA
|

414117 | 414193 | + | 77 | 121592436 | Ajs_R0002 | - | 16 Met tRNA
|

836662 | 836737 | + | 76 | 121592436 | Ajs_R0003 | - | 12 Thr tRNA
|

887009 | 887085 | - | 77 | 121592436 | Ajs_R0004 | - | 03 Pro tRNA
|

944869 | 944945 | - | 77 | 121592436 | Ajs_R0005 | - | 05 Gln tRNA
|

992918 | 992994 | - | 77 | 121592436 | Ajs_R0006 | - | 11 Arg tRNA
|

998729 | 998813 | + | 85 | 121592436 | Ajs_R0007 | - | 15 Leu tRNA
|

1158744 | 1158831 | - | 88 | 121592436 | Ajs_R0008 | - | 08 Ser tRNA
|

1248578 | 1250099 | + | 1522 | 121592436 | Ajs_R0009 | - | 16S ribosomal RNA |

1250181 | 1250257 | + | 77 | 121592436 | Ajs_R0010 | - | 14 Ile tRNA
|

1250292 | 1250367 | + | 76 | 121592436 | Ajs_R0011 | - | 02 Ala tRNA
|

1250707 | 1253585 | + | 2879 | 121592436 | Ajs_R0012 | - | 23S ribosomal RNA |

1253703 | 1253815 | + | 113 | 121592436 | Ajs_R0013 | - | 5S ribosomal RNA |

1281620 | 1281706 | + | 87 | 121592436 | Ajs_R0014 | - | 15 Leu tRNA
|

1287848 | 1287923 | + | 76 | 121592436 | Ajs_R0015 | - | 01 Gly tRNA
|

1408450 | 1408523 | + | 74 | 121592436 | Ajs_R0016 | - | 19 Cys tRNA
|

1408638 | 1408713 | + | 76 | 121592436 | Ajs_R0017 | - | 01 Gly tRNA
|

1659919 | 1659994 | + | 76 | 121592436 | Ajs_R0018 | - | 02 Ala tRNA
|

1660026 | 1660101 | + | 76 | 121592436 | Ajs_R0019 | - | 04 Glu tRNA
|

1660159 | 1660235 | + | 77 | 121592436 | Ajs_R0020 | - | 06 Asp tRNA
|

1684418 | 1684510 | + | 93 | 121592436 | Ajs_R0021 | - | 08 Ser tRNA
|

1735478 | 1735554 | + | 77 | 121592436 | Ajs_R0022 | - | 03 Pro tRNA
|

1795778 | 1795853 | + | 76 | 121592436 | Ajs_R0023 | - | 10 Lys tRNA
|

1870836 | 1870925 | + | 90 | 121592436 | Ajs_R0024 | - | 08 Ser tRNA
|

2077471 | 2077544 | - | 74 | 121592436 | Ajs_R0025 | - | 01 Gly tRNA
|

2261208 | 2261282 | - | 75 | 121592436 | Ajs_R0026 | - | 13 Val tRNA
|

2261322 | 2261396 | - | 75 | 121592436 | Ajs_R0027 | - | 13 Val tRNA
|

2435001 | 2435076 | + | 76 | 121592436 | Ajs_R0028 | - | 07 Asn tRNA
|

2435129 | 2435204 | + | 76 | 121592436 | Ajs_R0029 | - | 07 Asn tRNA
|

2494212 | 2494312 | + | 101 | 121592436 | Ajs_R0030 | - | SRP RNA |

2545780 | 2545856 | - | 77 | 121592436 | Ajs_R0031 | - | 03 Pro tRNA
|

2618142 | 2618517 | - | 376 | 121592436 | Ajs_R0032 | - | tmRNA |

2734229 | 2734313 | + | 85 | 121592436 | Ajs_R0033 | - | 15 Leu tRNA
|

2734494 | 2734578 | + | 85 | 121592436 | Ajs_R0034 | - | 15 Leu tRNA
|

2779715 | 2779791 | + | 77 | 121592436 | Ajs_R0035 | - | 11 Arg tRNA
|

2791155 | 2791230 | - | 76 | 121592436 | Ajs_R0036 | - | 09 His tRNA
|

2793262 | 2793337 | - | 76 | 121592436 | Ajs_R0037 | - | 13 Val tRNA
|

2895213 | 2895289 | - | 77 | 121592436 | Ajs_R0038 | - | 06 Asp tRNA
|

2895336 | 2895411 | - | 76 | 121592436 | Ajs_R0039 | - | 04 Glu tRNA
|

2895444 | 2895519 | - | 76 | 121592436 | Ajs_R0040 | - | 02 Ala tRNA
|

2923874 | 2923949 | + | 76 | 121592436 | Ajs_R0041 | - | 12 Thr tRNA
|

3328249 | 3328325 | - | 77 | 121592436 | Ajs_R0042 | - | 13 Val tRNA
|

3523853 | 3523928 | + | 76 | 121592436 | Ajs_R0043 | - | 10 Lys tRNA
|

3633028 | 3633117 | - | 90 | 121592436 | Ajs_R0044 | - | 08 Ser tRNA
|

3754391 | 3754465 | + | 75 | 121592436 | Ajs_R0045 | - | 11 Arg tRNA
|

3828784 | 3828860 | + | 77 | 121592436 | Ajs_R0046 | - | 16 Met tRNA
|

3943283 | 3943561 | - | 279 | 121592436 | Ajs_R0047 | - | RNaseP RNA |

4015747 | 4015879 | - | 133 | 121592436 | Ajs_R0048 | - | 5S ribosomal RNA |

4015997 | 4018875 | - | 2879 | 121592436 | Ajs_R0049 | - | 23S ribosomal RNA |

4019215 | 4019290 | - | 76 | 121592436 | Ajs_R0050 | - | 02 Ala tRNA
|

4019325 | 4019401 | - | 77 | 121592436 | Ajs_R0051 | - | 14 Ile tRNA
|

4019483 | 4021004 | - | 1522 | 121592436 | Ajs_R0052 | - | 16S ribosomal RNA |

4132026 | 4132101 | - | 76 | 121592436 | Ajs_R0053 | - | 17 Phe tRNA
|

4150130 | 4150205 | - | 76 | 121592436 | Ajs_R0054 | - | 20 Trp tRNA
|

4151487 | 4151561 | - | 75 | 121592436 | Ajs_R0055 | - | 12 Thr tRNA
|

4151603 | 4151676 | - | 74 | 121592436 | Ajs_R0056 | - | 01 Gly tRNA
|

4151725 | 4151810 | - | 86 | 121592436 | Ajs_R0057 | - | 18 Tyr tRNA
|

4153495 | 4153607 | - | 113 | 121592436 | Ajs_R0058 | - | 5S ribosomal RNA |

4153725 | 4156603 | - | 2879 | 121592436 | Ajs_R0059 | - | 23S ribosomal RNA |

4156943 | 4157018 | - | 76 | 121592436 | Ajs_R0060 | - | 02 Ala tRNA
|

4157053 | 4157129 | - | 77 | 121592436 | Ajs_R0061 | - | 14 Ile tRNA
|

4157211 | 4158732 | - | 1522 | 121592436 | Ajs_R0062 | - | 16S ribosomal RNA |

4301742 | 4301818 | - | 77 | 121592436 | Ajs_R0064 | - | 11 Arg tRNA
|