Материалы:NC 008321

LOCUS NC_008321 4706287 bp DNA circular BCT 05-SEP-2006 DEFINITION Shewanella sp. MR-4, complete genome. ACCESSION NC_008321 VERSION NC_008321.1 GI:113968346 KEYWORDS . SOURCE Shewanella sp. MR-4 ORGANISM Shewanella sp. MR-4 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella. REFERENCE 1 (bases 1 to 4706287) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Shewanella sp. MR-4 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4706287) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (05-SEP-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4706287) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000446. URL -- http://www.jgi.doe.gov JGI Project ID: 4000369 Source DNA and bacteria available from James Tiedje (tiedjej@msu.edu) Contacts: James Tiedje (tiedjej@msu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes:There are an unresolved number of tandem repeats in the region 419,046-426,962. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

42695 | 44229 | + | 1535 | 113968346 | Shewmr4_R0001 | - | 16S ribosomal RNA |

44542 | 47434 | + | 2893 | 113968346 | Shewmr4_R0002 | - | 23S ribosomal RNA |

47656 | 47771 | + | 116 | 113968346 | Shewmr4_R0003 | - | 5S ribosomal RNA |

47808 | 47884 | + | 77 | 113968346 | Shewmr4_R0004 | - | 06 Asp tRNA
|

121959 | 122049 | - | 91 | 113968346 | Shewmr4_R0005 | - | Sec tRNA |

152960 | 153194 | - | 235 | 113968346 | Shewmr4_R0006 | - | |

201986 | 203520 | + | 1535 | 113968346 | Shewmr4_R0007 | - | 16S ribosomal RNA |

203641 | 203717 | + | 77 | 113968346 | Shewmr4_R0008 | - | 14 Ile tRNA
|

203763 | 203838 | + | 76 | 113968346 | Shewmr4_R0009 | - | 02 Ala tRNA
|

204112 | 207004 | + | 2893 | 113968346 | Shewmr4_R0010 | - | 23S ribosomal RNA |

207136 | 207251 | + | 116 | 113968346 | Shewmr4_R0011 | - | 5S ribosomal RNA |

210615 | 210690 | + | 76 | 113968346 | Shewmr4_R0012 | - | 12 Thr tRNA
|

210698 | 210782 | + | 85 | 113968346 | Shewmr4_R0013 | - | 18 Tyr tRNA
|

210818 | 210891 | + | 74 | 113968346 | Shewmr4_R0014 | - | 01 Gly tRNA
|

210901 | 210976 | + | 76 | 113968346 | Shewmr4_R0015 | - | 12 Thr tRNA
|

253459 | 254993 | + | 1535 | 113968346 | Shewmr4_R0016 | - | 16S ribosomal RNA |

255305 | 258197 | + | 2893 | 113968346 | Shewmr4_R0017 | - | 23S ribosomal RNA |

258419 | 258534 | + | 116 | 113968346 | Shewmr4_R0018 | - | 5S ribosomal RNA |

258571 | 258647 | + | 77 | 113968346 | Shewmr4_R0019 | - | 06 Asp tRNA
|

405888 | 405964 | + | 77 | 113968346 | Shewmr4_R0020 | - | 11 Arg tRNA
|

406018 | 406093 | + | 76 | 113968346 | Shewmr4_R0021 | - | 09 His tRNA
|

406195 | 406271 | + | 77 | 113968346 | Shewmr4_R0022 | - | 03 Pro tRNA
|

406325 | 406401 | + | 77 | 113968346 | Shewmr4_R0023 | - | 03 Pro tRNA
|

683545 | 683620 | + | 76 | 113968346 | Shewmr4_R0024 | - | 01 Gly tRNA
|

683653 | 683728 | + | 76 | 113968346 | Shewmr4_R0025 | - | 01 Gly tRNA
|

683761 | 683836 | + | 76 | 113968346 | Shewmr4_R0026 | - | 01 Gly tRNA
|

683881 | 683956 | + | 76 | 113968346 | Shewmr4_R0027 | - | 01 Gly tRNA
|

827890 | 828008 | + | 119 | 113968346 | Shewmr4_R0028 | - | |

828009 | 828129 | + | 121 | 113968346 | Shewmr4_R0029 | - | |

994574 | 994741 | + | 168 | 113968346 | Shewmr4_R0030 | - | |

1145358 | 1145434 | + | 77 | 113968346 | Shewmr4_R0031 | - | 20 Trp tRNA
|

1176598 | 1176674 | + | 77 | 113968346 | Shewmr4_R0032 | - | 16 Met tRNA
|

1176729 | 1176813 | + | 85 | 113968346 | Shewmr4_R0033 | - | 15 Leu tRNA
|

1176861 | 1176935 | + | 75 | 113968346 | Shewmr4_R0034 | - | 05 Gln tRNA
|

1176958 | 1177032 | + | 75 | 113968346 | Shewmr4_R0035 | - | 05 Gln tRNA
|

1177034 | 1177110 | + | 77 | 113968346 | Shewmr4_R0036 | - | 16 Met tRNA
|

1177194 | 1177278 | + | 85 | 113968346 | Shewmr4_R0037 | - | 15 Leu tRNA
|

1177299 | 1177373 | + | 75 | 113968346 | Shewmr4_R0038 | - | 05 Gln tRNA
|

1192179 | 1192265 | + | 87 | 113968346 | Shewmr4_R0039 | - | 15 Leu tRNA
|

1192349 | 1192425 | + | 77 | 113968346 | Shewmr4_R0040 | - | 16 Met tRNA
|

1198787 | 1198899 | + | 113 | 113968346 | Shewmr4_R0041 | - | |

1327447 | 1327538 | + | 92 | 113968346 | Shewmr4_R0042 | - | 08 Ser tRNA
|

1327559 | 1327635 | + | 77 | 113968346 | Shewmr4_R0043 | - | 11 Arg tRNA
|

1327666 | 1327742 | + | 77 | 113968346 | Shewmr4_R0044 | - | 11 Arg tRNA
|

1327825 | 1327901 | + | 77 | 113968346 | Shewmr4_R0045 | - | 11 Arg tRNA
|

1327945 | 1328021 | + | 77 | 113968346 | Shewmr4_R0046 | - | 11 Arg tRNA
|

1328066 | 1328142 | + | 77 | 113968346 | Shewmr4_R0047 | - | 11 Arg tRNA
|

1328179 | 1328270 | + | 92 | 113968346 | Shewmr4_R0048 | - | 08 Ser tRNA
|

1328365 | 1328441 | + | 77 | 113968346 | Shewmr4_R0049 | - | 11 Arg tRNA
|

1380672 | 1380747 | - | 76 | 113968346 | Shewmr4_R0050 | - | 12 Thr tRNA
|

1380754 | 1380829 | - | 76 | 113968346 | Shewmr4_R0051 | - | 17 Phe tRNA
|

1381287 | 1381362 | - | 76 | 113968346 | Shewmr4_R0052 | - | 12 Thr tRNA
|

1381369 | 1381444 | - | 76 | 113968346 | Shewmr4_R0053 | - | 17 Phe tRNA
|

1460028 | 1460103 | - | 76 | 113968346 | Shewmr4_R0054 | - | 11 Arg tRNA
|

1587682 | 1587757 | - | 76 | 113968346 | Shewmr4_R0056 | - | 13 Val tRNA
|

1587783 | 1587858 | - | 76 | 113968346 | Shewmr4_R0057 | - | 13 Val tRNA
|

1587900 | 1587975 | - | 76 | 113968346 | Shewmr4_R0058 | - | 13 Val tRNA
|

1588017 | 1588092 | - | 76 | 113968346 | Shewmr4_R0059 | - | 13 Val tRNA
|

1588125 | 1588200 | - | 76 | 113968346 | Shewmr4_R0060 | - | 13 Val tRNA
|

1588249 | 1588324 | - | 76 | 113968346 | Shewmr4_R0061 | - | 13 Val tRNA
|

1590422 | 1590497 | + | 76 | 113968346 | Shewmr4_R0062 | - | 02 Ala tRNA
|

1590565 | 1590640 | + | 76 | 113968346 | Shewmr4_R0063 | - | 04 Glu tRNA
|

1590748 | 1590823 | + | 76 | 113968346 | Shewmr4_R0064 | - | 02 Ala tRNA
|

1590888 | 1590963 | + | 76 | 113968346 | Shewmr4_R0065 | - | 04 Glu tRNA
|

1591144 | 1591219 | + | 76 | 113968346 | Shewmr4_R0066 | - | 04 Glu tRNA
|

1591317 | 1591392 | + | 76 | 113968346 | Shewmr4_R0067 | - | 04 Glu tRNA
|

1591573 | 1591648 | + | 76 | 113968346 | Shewmr4_R0068 | - | 04 Glu tRNA
|

1591829 | 1591904 | + | 76 | 113968346 | Shewmr4_R0069 | - | 04 Glu tRNA
|

1592085 | 1592160 | + | 76 | 113968346 | Shewmr4_R0070 | - | 04 Glu tRNA
|

1791058 | 1792592 | + | 1535 | 113968346 | Shewmr4_R0071 | - | 16S ribosomal RNA |

1792693 | 1792769 | + | 77 | 113968346 | Shewmr4_R0072 | - | 14 Ile tRNA
|

1792908 | 1792983 | + | 76 | 113968346 | Shewmr4_R0073 | - | 02 Ala tRNA
|

1793259 | 1796151 | + | 2893 | 113968346 | Shewmr4_R0074 | - | 23S ribosomal RNA |

1796373 | 1796488 | + | 116 | 113968346 | Shewmr4_R0075 | - | 5S ribosomal RNA |

1815933 | 1816009 | - | 77 | 113968346 | Shewmr4_R0076 | - | 16 Met tRNA
|

1816057 | 1816133 | - | 77 | 113968346 | Shewmr4_R0077 | - | 16 Met tRNA
|

1816223 | 1816299 | - | 77 | 113968346 | Shewmr4_R0078 | - | 16 Met tRNA
|

1816338 | 1816414 | - | 77 | 113968346 | Shewmr4_R0079 | - | 16 Met tRNA
|

1825840 | 1825930 | + | 91 | 113968346 | Shewmr4_R0080 | - | 08 Ser tRNA
|

1826727 | 1826817 | + | 91 | 113968346 | Shewmr4_R0081 | - | 08 Ser tRNA
|

1830560 | 1830635 | + | 76 | 113968346 | Shewmr4_R0082 | - | 01 Gly tRNA
|

1830657 | 1830730 | + | 74 | 113968346 | Shewmr4_R0083 | - | 19 Cys tRNA
|

1830779 | 1830865 | + | 87 | 113968346 | Shewmr4_R0084 | - | 15 Leu tRNA
|

1830996 | 1831082 | + | 87 | 113968346 | Shewmr4_R0085 | - | 15 Leu tRNA
|

1999543 | 1999630 | + | 88 | 113968346 | Shewmr4_R0086 | - | 08 Ser tRNA
|

2239340 | 2239438 | + | 99 | 113968346 | Shewmr4_R0087 | - | |

2328222 | 2328298 | - | 77 | 113968346 | Shewmr4_R0089 | - | 13 Val tRNA
|

2328337 | 2328413 | - | 77 | 113968346 | Shewmr4_R0090 | - | 13 Val tRNA
|

2350019 | 2350109 | + | 91 | 113968346 | Shewmr4_R0091 | - | 08 Ser tRNA
|

2406007 | 2406093 | - | 87 | 113968346 | Shewmr4_R0092 | - | 15 Leu tRNA
|

2406143 | 2406216 | - | 74 | 113968346 | Shewmr4_R0093 | - | 19 Cys tRNA
|

2406240 | 2406315 | - | 76 | 113968346 | Shewmr4_R0094 | - | 01 Gly tRNA
|

2448931 | 2449015 | + | 85 | 113968346 | Shewmr4_R0095 | - | 18 Tyr tRNA
|

2449055 | 2449139 | + | 85 | 113968346 | Shewmr4_R0096 | - | 18 Tyr tRNA
|

2449256 | 2449340 | + | 85 | 113968346 | Shewmr4_R0097 | - | 18 Tyr tRNA
|

2455379 | 2455454 | + | 76 | 113968346 | Shewmr4_R0098 | - | 07 Asn tRNA
|

2455501 | 2455576 | + | 76 | 113968346 | Shewmr4_R0099 | - | 07 Asn tRNA
|

2455607 | 2455682 | + | 76 | 113968346 | Shewmr4_R0100 | - | 07 Asn tRNA
|

2455728 | 2455803 | + | 76 | 113968346 | Shewmr4_R0101 | - | 07 Asn tRNA
|

2455850 | 2455925 | + | 76 | 113968346 | Shewmr4_R0102 | - | 07 Asn tRNA
|

2583734 | 2583810 | - | 77 | 113968346 | Shewmr4_R0103 | - | 06 Asp tRNA
|

2583868 | 2583944 | - | 77 | 113968346 | Shewmr4_R0104 | - | 06 Asp tRNA
|

2681894 | 2681970 | - | 77 | 113968346 | Shewmr4_R0105 | - | 03 Pro tRNA
|

2758388 | 2758498 | - | 111 | 113968346 | Shewmr4_R0106 | - | |

2822195 | 2822270 | - | 76 | 113968346 | Shewmr4_R0107 | - | 10 Lys tRNA
|

2822432 | 2822507 | - | 76 | 113968346 | Shewmr4_R0108 | - | 10 Lys tRNA
|

2822543 | 2822618 | - | 76 | 113968346 | Shewmr4_R0109 | - | 10 Lys tRNA
|

2822782 | 2822857 | - | 76 | 113968346 | Shewmr4_R0110 | - | 10 Lys tRNA
|

2822895 | 2822970 | - | 76 | 113968346 | Shewmr4_R0111 | - | 10 Lys tRNA
|

2823006 | 2823081 | - | 76 | 113968346 | Shewmr4_R0112 | - | 10 Lys tRNA
|

2823136 | 2823211 | - | 76 | 113968346 | Shewmr4_R0113 | - | 10 Lys tRNA
|

2943926 | 2944043 | - | 118 | 113968346 | Shewmr4_R0114 | - | SRP RNA; RNA component of signal recognition particle |

2967638 | 2967713 | - | 76 | 113968346 | Shewmr4_R0115 | - | 09 His tRNA
|

2967723 | 2967799 | - | 77 | 113968346 | Shewmr4_R0116 | - | 11 Arg tRNA
|

2967915 | 2967991 | - | 77 | 113968346 | Shewmr4_R0117 | - | 03 Pro tRNA
|

3146520 | 3146671 | - | 152 | 113968346 | Shewmr4_R0118 | - | |

3323222 | 3323576 | + | 355 | 113968346 | Shewmr4_R0119 | - | tmRNA |

3471665 | 3471741 | + | 77 | 113968346 | Shewmr4_R0120 | - | 16 Met tRNA
|

3569887 | 3570002 | - | 116 | 113968346 | Shewmr4_R0121 | - | 5S ribosomal RNA |

3570224 | 3573116 | - | 2893 | 113968346 | Shewmr4_R0122 | - | 23S ribosomal RNA |

3573475 | 3575009 | - | 1535 | 113968346 | Shewmr4_R0123 | - | 16S ribosomal RNA |

3582813 | 3582888 | + | 76 | 113968346 | Shewmr4_R0124 | - | 17 Phe tRNA
|

3582944 | 3583030 | + | 87 | 113968346 | Shewmr4_R0125 | - | 15 Leu tRNA
|

3583074 | 3583160 | + | 87 | 113968346 | Shewmr4_R0126 | - | 15 Leu tRNA
|

3621834 | 3621966 | + | 133 | 113968346 | Shewmr4_R0127 | - | |

3850188 | 3850274 | - | 87 | 113968346 | Shewmr4_R0128 | - | 15 Leu tRNA
|

3944128 | 3944359 | - | 232 | 113968346 | Shewmr4_R0129 | - | |

4250262 | 4250377 | - | 116 | 113968346 | Shewmr4_R0130 | - | 5S ribosomal RNA |

4250508 | 4253400 | - | 2893 | 113968346 | Shewmr4_R0131 | - | 23S ribosomal RNA |

4253712 | 4255246 | - | 1535 | 113968346 | Shewmr4_R0132 | - | 16S ribosomal RNA |

4256466 | 4256541 | - | 76 | 113968346 | Shewmr4_R0133 | - | 12 Thr tRNA
|

4256575 | 4256690 | - | 116 | 113968346 | Shewmr4_R0134 | - | 5S ribosomal RNA |

4256912 | 4259804 | - | 2893 | 113968346 | Shewmr4_R0135 | - | 23S ribosomal RNA |

4260116 | 4261650 | - | 1535 | 113968346 | Shewmr4_R0136 | - | 16S ribosomal RNA |

4400137 | 4400436 | - | 300 | 113968346 | Shewmr4_R0137 | - | RNA component of RNaseP |

4432961 | 4433076 | - | 116 | 113968346 | Shewmr4_R0138 | - | 5S ribosomal RNA |

4433298 | 4436190 | - | 2893 | 113968346 | Shewmr4_R0139 | - | 23S ribosomal RNA |

4436502 | 4438036 | - | 1535 | 113968346 | Shewmr4_R0140 | - | 16S ribosomal RNA |

4672013 | 4672128 | - | 116 | 113968346 | Shewmr4_R0141 | - | 5S ribosomal RNA |

4672350 | 4675242 | - | 2893 | 113968346 | Shewmr4_R0142 | - | 23S ribosomal RNA |

4675601 | 4677135 | - | 1535 | 113968346 | Shewmr4_R0143 | - | 16S ribosomal RNA |