Материалы:NC 008390

LOCUS NC_008390 3556545 bp DNA circular BCT 27-SEP-2006 DEFINITION Burkholderia cepacia AMMD chromosome 1, complete sequence. ACCESSION NC_008390 VERSION NC_008390.1 GI:115350056 KEYWORDS . SOURCE Burkholderia cepacia AMMD ORGANISM Burkholderia cepacia AMMD Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex. REFERENCE 1 (bases 1 to 3556545) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Bruce,D., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Parke,J., Coenye,T., Konstantinidis,K., Ramette,A., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromosome 1 of Burkholderia cepacia AMMD JOURNAL Unpublished REFERENCE 2 (bases 1 to 3556545) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-SEP-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3556545) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Bruce,D., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Parke,J., Coenye,T., Konstantinidis,K., Ramette,A., Tiedje,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000440. URL -- http://www.jgi.doe.gov JGI Project ID: 4000046 Source DNA and bacteria available from James Tiedje (tiedjej@msu.edu) Contacts: James Tiedje (tiedjej@msu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

11400 | 11485 | - | 86 | 115350056 | Bamb_R0001 | - | 5S ribosomal RNA |

11637 | 14518 | - | 2882 | 115350056 | Bamb_R0002 | - | 23S ribosomal RNA |

14918 | 16443 | - | 1526 | 115350056 | Bamb_R0003 | - | 16S ribosomal RNA |

22022 | 22098 | + | 77 | 115350056 | Bamb_R0004 | - | 13 Val tRNA
|

165011 | 165086 | + | 76 | 115350056 | Bamb_R0005 | - | 11 Arg tRNA
|

239177 | 239252 | + | 76 | 115350056 | Bamb_R0006 | - | 02 Ala tRNA
|

290626 | 292151 | + | 1526 | 115350056 | Bamb_R0007 | - | 16S ribosomal RNA |

292215 | 292291 | + | 77 | 115350056 | Bamb_R0008 | - | 14 Ile tRNA
|

292334 | 292409 | + | 76 | 115350056 | Bamb_R0009 | - | 02 Ala tRNA
|

292700 | 295581 | + | 2882 | 115350056 | Bamb_R0010 | - | 23S ribosomal RNA |

295763 | 295875 | + | 113 | 115350056 | Bamb_R0011 | - | 5S ribosomal RNA |

298069 | 298154 | + | 86 | 115350056 | Bamb_R0012 | - | 18 Tyr tRNA
|

298198 | 298271 | + | 74 | 115350056 | Bamb_R0013 | - | 01 Gly tRNA
|

298297 | 298371 | + | 75 | 115350056 | Bamb_R0014 | - | 12 Thr tRNA
|

299686 | 299761 | + | 76 | 115350056 | Bamb_R0015 | - | 20 Trp tRNA
|

403358 | 403433 | + | 76 | 115350056 | Bamb_R0016 | - | 12 Thr tRNA
|

502497 | 504022 | + | 1526 | 115350056 | Bamb_R0017 | - | 16S ribosomal RNA |

504085 | 504161 | + | 77 | 115350056 | Bamb_R0018 | - | 14 Ile tRNA
|

504247 | 504322 | + | 76 | 115350056 | Bamb_R0019 | - | 02 Ala tRNA
|

504612 | 507493 | + | 2882 | 115350056 | Bamb_R0020 | - | 23S ribosomal RNA |

507677 | 507789 | + | 113 | 115350056 | Bamb_R0021 | - | 5S ribosomal RNA |

547322 | 547398 | - | 77 | 115350056 | Bamb_R0022 | - | 03 Pro tRNA
|

644675 | 644978 | + | 304 | 115350056 | Bamb_R0023 | - | RNA component of RNaseP |

755874 | 755950 | - | 77 | 115350056 | Bamb_R0024 | - | 10 Lys tRNA
|

883412 | 883486 | - | 75 | 115350056 | Bamb_R0025 | - | 01 Gly tRNA
|

928024 | 928114 | + | 91 | 115350056 | Bamb_R0026 | - | 08 Ser tRNA
|

939995 | 940082 | - | 88 | 115350056 | Bamb_R0027 | - | 08 Ser tRNA
|

947488 | 947564 | - | 77 | 115350056 | Bamb_R0028 | - | 11 Arg tRNA
|

947626 | 947702 | - | 77 | 115350056 | Bamb_R0029 | - | 11 Arg tRNA
|

947769 | 947845 | - | 77 | 115350056 | Bamb_R0030 | - | 11 Arg tRNA
|

961957 | 962032 | - | 76 | 115350056 | Bamb_R0031 | - | 12 Thr tRNA
|

1003499 | 1003787 | + | 289 | 115350056 | Bamb_R0032 | - | tmRNA |

1064508 | 1064583 | - | 76 | 115350056 | Bamb_R0033 | - | 07 Asn tRNA
|

1064655 | 1064730 | - | 76 | 115350056 | Bamb_R0034 | - | 07 Asn tRNA
|

1110837 | 1110912 | + | 76 | 115350056 | Bamb_R0035 | - | 01 Gly tRNA
|

1110965 | 1111040 | + | 76 | 115350056 | Bamb_R0036 | - | 01 Gly tRNA
|

1111091 | 1111166 | + | 76 | 115350056 | Bamb_R0037 | - | 01 Gly tRNA
|

1111267 | 1111340 | + | 74 | 115350056 | Bamb_R0038 | - | 19 Cys tRNA
|

1310921 | 1310997 | - | 77 | 115350056 | Bamb_R0039 | - | 03 Pro tRNA
|

1320315 | 1320391 | + | 77 | 115350056 | Bamb_R0040 | - | 11 Arg tRNA
|

1492772 | 1492848 | + | 77 | 115350056 | Bamb_R0041 | - | 13 Val tRNA
|

1504737 | 1504813 | + | 77 | 115350056 | Bamb_R0042 | - | 03 Pro tRNA
|

1573441 | 1573527 | - | 87 | 115350056 | Bamb_R0043 | - | 15 Leu tRNA
|

1573734 | 1573820 | - | 87 | 115350056 | Bamb_R0044 | - | 15 Leu tRNA
|

1595642 | 1595728 | - | 87 | 115350056 | Bamb_R0045 | - | 15 Leu tRNA
|

1608538 | 1608614 | - | 77 | 115350056 | Bamb_R0046 | - | 16 Met tRNA
|

1616792 | 1616867 | + | 76 | 115350056 | Bamb_R0047 | - | 09 His tRNA
|

1952818 | 1952922 | - | 105 | 115350056 | Bamb_R0048 | - | SRP RNA; RNA component of signal recognition particle |

2100921 | 2100997 | - | 77 | 115350056 | Bamb_R0049 | - | 06 Asp tRNA
|

2101021 | 2101096 | - | 76 | 115350056 | Bamb_R0050 | - | 13 Val tRNA
|

2116714 | 2116800 | - | 87 | 115350056 | Bamb_R0051 | - | 15 Leu tRNA
|

2290767 | 2290843 | - | 77 | 115350056 | Bamb_R0052 | - | 06 Asp tRNA
|

2290917 | 2290992 | - | 76 | 115350056 | Bamb_R0053 | - | 04 Glu tRNA
|

2291058 | 2291134 | - | 77 | 115350056 | Bamb_R0054 | - | 06 Asp tRNA
|

2291215 | 2291290 | - | 76 | 115350056 | Bamb_R0055 | - | 04 Glu tRNA
|

2291354 | 2291430 | - | 77 | 115350056 | Bamb_R0056 | - | 06 Asp tRNA
|

2291510 | 2291585 | - | 76 | 115350056 | Bamb_R0057 | - | 04 Glu tRNA
|

2291725 | 2291800 | - | 76 | 115350056 | Bamb_R0058 | - | 02 Ala tRNA
|

2317993 | 2318086 | - | 94 | 115350056 | Bamb_R0059 | - | 08 Ser tRNA
|

2400267 | 2400343 | - | 77 | 115350056 | Bamb_R0060 | - | 16 Met tRNA
|

2424859 | 2424933 | + | 75 | 115350056 | Bamb_R0061 | - | 13 Val tRNA
|

2452752 | 2452842 | + | 91 | 115350056 | Bamb_R0062 | - | 08 Ser tRNA
|

2487888 | 2487984 | - | 97 | 115350056 | Bamb_R0063 | - | 5S ribosomal RNA |

2488115 | 2490996 | - | 2882 | 115350056 | Bamb_R0064 | - | 23S ribosomal RNA |

2491287 | 2491362 | - | 76 | 115350056 | Bamb_R0065 | - | 02 Ala tRNA
|

2491405 | 2491481 | - | 77 | 115350056 | Bamb_R0066 | - | 14 Ile tRNA
|

2491545 | 2493070 | - | 1526 | 115350056 | Bamb_R0067 | - | 16S ribosomal RNA |

2524022 | 2524106 | - | 85 | 115350056 | Bamb_R0068 | - | 15 Leu tRNA
|

2649022 | 2649096 | + | 75 | 115350056 | Bamb_R0069 | - | 11 Arg tRNA
|

2665358 | 2665434 | + | 77 | 115350056 | Bamb_R0070 | - | 16 Met tRNA
|

2678218 | 2678294 | + | 77 | 115350056 | Bamb_R0071 | - | 16 Met tRNA
|

2784645 | 2784729 | + | 85 | 115350056 | Bamb_R0072 | - | 15 Leu tRNA
|

2978457 | 2978533 | + | 77 | 115350056 | Bamb_R0073 | - | 16 Met tRNA
|

3156370 | 3156446 | + | 77 | 115350056 | Bamb_R0074 | - | 05 Gln tRNA
|

3509379 | 3509454 | - | 76 | 115350056 | Bamb_R0075 | - | 17 Phe tRNA
|

3526870 | 3526945 | + | 76 | 115350056 | Bamb_R0076 | - | 10 Lys tRNA
|