Материалы:NC 004347

```
LOCUS NC_004347 4969803 bp DNA circular BCT 20-JUN-2007
DEFINITION Shewanella oneidensis MR-1, complete genome.
ACCESSION NC_004347
VERSION NC_004347.1 GI:24371600
KEYWORDS .
SOURCE Shewanella oneidensis MR-1
ORGANISM Shewanella oneidensis MR-1
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
Shewanellaceae; Shewanella.
REFERENCE 1 (bases 1 to 4969803)
AUTHORS Daraselia,N., Dernovoy,D., Tian,Y., Borodovsky,M., Tatusov,R. and
Tatusova,T.
TITLE Reannotation of Shewanella oneidensis genome
JOURNAL OMICS 7 (2), 171-175 (2003)
PUBMED 14506846
REFERENCE 2 (bases 1 to 4969803)
AUTHORS Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W.,
Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R.,
Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R.,
Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J.,
Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,
Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T.,
Smith,H., Venter,J., Nealson,K. and Fraser,C.
TITLE Genome sequence of the dissimilatory metal ion-reducing bacterium
Shewanella oneidensis
JOURNAL Nat. Biotechnol. 20 (11), 1118-1123 (2002)
PUBMED 12368813
REFERENCE 3 (bases 1 to 4969803)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 4 (bases 1 to 4969803)
AUTHORS Heidelberg,J., Paulsen,I., Nelson,K., Gaidos,E., Nelson,W.,
Read,T., Eisen,J., Seshadri,R., Ward,N., Methe,B., Clayton,R.,
Meyer,T., Tsapin,A., Scott,J., Beanan,M., Brinkac,L., Daugherty,S.,
DeBoy,R., Dodson,R., Durkin,A., Haft,D., Kolonay,J., Madupu,R.,
Peterson,J., Umayam,L., White,O., Wolf,A., Vamathevan,J.,
Weidman,J., Impraim,M., Lee,K., Berry,K., Lee,C., Mueller,J.,
Khouri,H., Gill,J., Utterback,T., McDonald,L., Feldblyum,T.,
Smith,H., Venter,J., Nealson,K. and Fraser,C.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) The Institute for Genomic Research, 9712
Medical Center Dr., Rockville, MD 20850, USA
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AE014299.
REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
with comparison to orginal submitter provided annotation.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

46116 | 47644 | + | 1529 | 24371600 | SO_r001 | - | 16S ribosomal RNA |

47961 | 50853 | + | 2893 | 24371600 | SO_r002 | - | 23S ribosomal RNA |

51057 | 51176 | + | 120 | 24371600 | SO_r003 | - | 5S ribosomal RNA |

51211 | 51287 | + | 77 | 24371600 | SO_t001 | - | 06 Asp tRNA
|

117553 | 117643 | - | 91 | 24371600 | SO_t002 | - | Sec tRNA |

216788 | 218316 | + | 1529 | 24371600 | SO_r004 | - | 16S ribosomal RNA |

218392 | 218468 | + | 77 | 24371600 | SO_t003 | - | 14 Ile tRNA
|

218607 | 218682 | + | 76 | 24371600 | SO_t004 | - | 02 Ala tRNA
|

218957 | 221849 | + | 2893 | 24371600 | SO_r005 | - | 23S ribosomal RNA |

222053 | 222172 | + | 120 | 24371600 | SO_r006 | - | 5S ribosomal RNA |

226804 | 226879 | + | 76 | 24371600 | SO_t005 | - | 12 Thr tRNA
|

226887 | 226971 | + | 85 | 24371600 | SO_t006 | - | 18 Tyr tRNA
|

227006 | 227079 | + | 74 | 24371600 | SO_t007 | - | 01 Gly tRNA
|

227089 | 227164 | + | 76 | 24371600 | SO_t008 | - | 12 Thr tRNA
|

269814 | 271342 | + | 1529 | 24371600 | SO_r007 | - | 16S ribosomal RNA |

271658 | 274551 | + | 2894 | 24371600 | SO_r008 | - | 23S ribosomal RNA |

274755 | 274874 | + | 120 | 24371600 | SO_r009 | - | 5S ribosomal RNA |

620170 | 620245 | + | 76 | 24371600 | SO_t009 | - | 01 Gly tRNA
|

620370 | 620445 | + | 76 | 24371600 | SO_t010 | - | 01 Gly tRNA
|

620568 | 620643 | + | 76 | 24371600 | SO_t011 | - | 01 Gly tRNA
|

620770 | 620845 | + | 76 | 24371600 | SO_t012 | - | 01 Gly tRNA
|

1198589 | 1198665 | + | 77 | 24371600 | SO_t013 | - | 20 Trp tRNA
|

1229540 | 1229616 | + | 77 | 24371600 | SO_t014 | - | 16 Met tRNA
|

1229671 | 1229755 | + | 85 | 24371600 | SO_t015 | - | 15 Leu tRNA
|

1229802 | 1229876 | + | 75 | 24371600 | SO_t016 | - | 05 Gln tRNA
|

1229898 | 1229972 | + | 75 | 24371600 | SO_t017 | - | 05 Gln tRNA
|

1229974 | 1230050 | + | 77 | 24371600 | SO_t018 | - | 16 Met tRNA
|

1230132 | 1230216 | + | 85 | 24371600 | SO_t019 | - | 15 Leu tRNA
|

1230253 | 1230327 | + | 75 | 24371600 | SO_t020 | - | 05 Gln tRNA
|

1245541 | 1245627 | + | 87 | 24371600 | SO_t021 | - | 15 Leu tRNA
|

1245711 | 1245787 | + | 77 | 24371600 | SO_t022 | - | 16 Met tRNA
|

1335235 | 1335311 | - | 77 | 24371600 | SO_t023 | - | 16 Met tRNA
|

1880017 | 1880093 | + | 77 | 24371600 | SO_t024 | - | 03 Pro tRNA
|

1880184 | 1880260 | + | 77 | 24371600 | SO_t025 | - | 11 Arg tRNA
|

1880270 | 1880345 | + | 76 | 24371600 | SO_t026 | - | 09 His tRNA
|

1939976 | 1940052 | - | 77 | 24371600 | SO_t027 | - | 16 Met tRNA
|

1940200 | 1940276 | - | 77 | 24371600 | SO_t028 | - | 16 Met tRNA
|

1940424 | 1940500 | - | 77 | 24371600 | SO_t029 | - | 16 Met tRNA
|

1940538 | 1940614 | - | 77 | 24371600 | SO_t030 | - | 16 Met tRNA
|

1950041 | 1950131 | + | 91 | 24371600 | SO_t031 | - | 08 Ser tRNA
|

1951113 | 1951203 | + | 91 | 24371600 | SO_t032 | - | 08 Ser tRNA
|

1955125 | 1955200 | + | 76 | 24371600 | SO_t033 | - | 01 Gly tRNA
|

1955222 | 1955295 | + | 74 | 24371600 | SO_t034 | - | 19 Cys tRNA
|

1955344 | 1955430 | + | 87 | 24371600 | SO_t035 | - | 15 Leu tRNA
|

1955563 | 1955649 | + | 87 | 24371600 | SO_t036 | - | 15 Leu tRNA
|

2124193 | 2124269 | + | 77 | 24371600 | SO_t037 | - | 03 Pro tRNA
|

2235124 | 2235211 | + | 88 | 24371600 | SO_t038 | - | 08 Ser tRNA
|

2406959 | 2407035 | - | 77 | 24371600 | SO_t039 | - | 13 Val tRNA
|

2407073 | 2407149 | - | 77 | 24371600 | SO_t040 | - | 13 Val tRNA
|

2456843 | 2456918 | + | 76 | 24371600 | SO_t041 | - | 01 Gly tRNA
|

2456939 | 2457012 | + | 74 | 24371600 | SO_t042 | - | 19 Cys tRNA
|

2457062 | 2457148 | + | 87 | 24371600 | SO_t043 | - | 15 Leu tRNA
|

2477570 | 2477660 | - | 91 | 24371600 | SO_t044 | - | 08 Ser tRNA
|

2626488 | 2626572 | + | 85 | 24371600 | SO_t045 | - | 18 Tyr tRNA
|

2626612 | 2626696 | + | 85 | 24371600 | SO_t046 | - | 18 Tyr tRNA
|

2626814 | 2626898 | + | 85 | 24371600 | SO_t047 | - | 18 Tyr tRNA
|

2632847 | 2632922 | + | 76 | 24371600 | SO_t048 | - | 07 Asn tRNA
|

2632971 | 2633046 | + | 76 | 24371600 | SO_t049 | - | 07 Asn tRNA
|

2633078 | 2633153 | + | 76 | 24371600 | SO_t050 | - | 07 Asn tRNA
|

2633199 | 2633274 | + | 76 | 24371600 | SO_t051 | - | 07 Asn tRNA
|

2633320 | 2633395 | + | 76 | 24371600 | SO_t052 | - | 07 Asn tRNA
|

2687482 | 2687558 | - | 77 | 24371600 | SO_t053 | - | 06 Asp tRNA
|

2687616 | 2687692 | - | 77 | 24371600 | SO_t054 | - | 06 Asp tRNA
|

2866689 | 2866764 | - | 76 | 24371600 | SO_t055 | - | 10 Lys tRNA
|

2866798 | 2866873 | - | 76 | 24371600 | SO_t056 | - | 10 Lys tRNA
|

2867035 | 2867110 | - | 76 | 24371600 | SO_t057 | - | 10 Lys tRNA
|

2867144 | 2867219 | - | 76 | 24371600 | SO_t058 | - | 10 Lys tRNA
|

2867253 | 2867328 | - | 76 | 24371600 | SO_t059 | - | 10 Lys tRNA
|

2867362 | 2867452 | - | 91 | 24371600 | SO_t060 | - | 10 Lys tRNA
|

2867486 | 2867561 | - | 76 | 24371600 | SO_t061 | - | 10 Lys tRNA
|

2867616 | 2867691 | - | 76 | 24371600 | SO_t062 | - | 10 Lys tRNA
|

2969193 | 2969312 | - | 120 | 24371600 | SO_r010 | - | 5S ribosomal RNA |

2969516 | 2972408 | - | 2893 | 24371600 | SO_r011 | - | 23S ribosomal RNA |

2972683 | 2972758 | - | 76 | 24371600 | SO_t063 | - | 02 Ala tRNA
|

2972897 | 2972973 | - | 77 | 24371600 | SO_t064 | - | 14 Ile tRNA
|

2973049 | 2974577 | - | 1529 | 24371600 | SO_r012 | - | 16S ribosomal RNA |

3258460 | 3258535 | - | 76 | 24371600 | SO_t065 | - | 04 Glu tRNA
|

3258634 | 3258709 | - | 76 | 24371600 | SO_t066 | - | 04 Glu tRNA
|

3258809 | 3258884 | - | 76 | 24371600 | SO_t067 | - | 04 Glu tRNA
|

3258983 | 3259058 | - | 76 | 24371600 | SO_t068 | - | 04 Glu tRNA
|

3259137 | 3259212 | - | 76 | 24371600 | SO_t069 | - | 04 Glu tRNA
|

3259276 | 3259351 | - | 76 | 24371600 | SO_t070 | - | 02 Ala tRNA
|

3259459 | 3259534 | - | 76 | 24371600 | SO_t071 | - | 04 Glu tRNA
|

3259601 | 3259676 | - | 76 | 24371600 | SO_t072 | - | 02 Ala tRNA
|

3261718 | 3261793 | + | 76 | 24371600 | SO_t073 | - | 13 Val tRNA
|

3261842 | 3261917 | + | 76 | 24371600 | SO_t074 | - | 13 Val tRNA
|

3261945 | 3262020 | + | 76 | 24371600 | SO_t075 | - | 13 Val tRNA
|

3262066 | 3262141 | + | 76 | 24371600 | SO_t076 | - | 13 Val tRNA
|

3262168 | 3262243 | + | 76 | 24371600 | SO_t077 | - | 13 Val tRNA
|

3395143 | 3395218 | + | 76 | 24371600 | SO_t078 | - | 11 Arg tRNA
|

3513641 | 3513716 | + | 76 | 24371600 | SO_t079 | - | 17 Phe tRNA
|

3513738 | 3513813 | + | 76 | 24371600 | SO_t080 | - | 12 Thr tRNA
|

3514336 | 3514411 | + | 76 | 24371600 | SO_t081 | - | 17 Phe tRNA
|

3514433 | 3514508 | + | 76 | 24371600 | SO_t082 | - | 12 Thr tRNA
|

3566969 | 3567045 | - | 77 | 24371600 | SO_t083 | - | 11 Arg tRNA
|

3567141 | 3567232 | - | 92 | 24371600 | SO_t084 | - | 08 Ser tRNA
|

3567269 | 3567345 | - | 77 | 24371600 | SO_t085 | - | 11 Arg tRNA
|

3567389 | 3567465 | - | 77 | 24371600 | SO_t086 | - | 11 Arg tRNA
|

3567509 | 3567585 | - | 77 | 24371600 | SO_t087 | - | 11 Arg tRNA
|

3567669 | 3567745 | - | 77 | 24371600 | SO_t088 | - | 11 Arg tRNA
|

3567777 | 3567853 | - | 77 | 24371600 | SO_t089 | - | 11 Arg tRNA
|

3567874 | 3567965 | - | 92 | 24371600 | SO_t090 | - | 08 Ser tRNA
|

3734846 | 3734965 | - | 120 | 24371600 | SO_r013 | - | 5S ribosomal RNA |

3735169 | 3738061 | - | 2893 | 24371600 | SO_r014 | - | 23S ribosomal RNA |

3738378 | 3739906 | - | 1529 | 24371600 | SO_r015 | - | 16S ribosomal RNA |

3748013 | 3748088 | + | 76 | 24371600 | SO_t091 | - | 17 Phe tRNA
|

3748144 | 3748230 | + | 87 | 24371600 | SO_t092 | - | 15 Leu tRNA
|

3748272 | 3748358 | + | 87 | 24371600 | SO_t093 | - | 15 Leu tRNA
|

4035175 | 4035261 | - | 87 | 24371600 | SO_t094 | - | 15 Leu tRNA
|

4376975 | 4377094 | - | 120 | 24371600 | SO_r016 | - | 5S ribosomal RNA |

4377298 | 4380190 | - | 2893 | 24371600 | SO_r017 | - | 23S ribosomal RNA |

4380465 | 4380540 | - | 76 | 24371600 | SO_t095 | - | 02 Ala tRNA
|

4380679 | 4380755 | - | 77 | 24371600 | SO_t096 | - | 14 Ile tRNA
|

4380831 | 4382359 | - | 1529 | 24371600 | SO_r018 | - | 16S ribosomal RNA |

4512002 | 4512078 | - | 77 | 24371600 | SO_t097 | - | 03 Pro tRNA
|

4512132 | 4512208 | - | 77 | 24371600 | SO_t098 | - | 03 Pro tRNA
|

4512224 | 4512299 | - | 76 | 24371600 | SO_t099 | - | 09 His tRNA
|

4512352 | 4512428 | - | 77 | 24371600 | SO_t100 | - | 11 Arg tRNA
|

4679082 | 4679201 | - | 120 | 24371600 | SO_r019 | - | 5S ribosomal RNA |

4679233 | 4679308 | - | 76 | 24371600 | SO_t101 | - | 12 Thr tRNA
|

4679337 | 4679456 | + | 120 | 24371600 | SO_r028 | - | 5S ribosomal RNA |

4679660 | 4682552 | - | 2893 | 24371600 | SO_r020 | - | 23S ribosomal RNA |

4682869 | 4684397 | - | 1529 | 24371600 | SO_r021 | - | 16S ribosomal RNA |

4688336 | 4688412 | - | 77 | 24371600 | SO_t102 | - | 06 Asp tRNA
|

4688447 | 4688566 | - | 120 | 24371600 | SO_r022 | - | 5S ribosomal RNA |

4688770 | 4691662 | - | 2893 | 24371600 | SO_r023 | - | 23S ribosomal RNA |

4691979 | 4693507 | - | 1529 | 24371600 | SO_r024 | - | 16S ribosomal RNA |

4942369 | 4942488 | - | 120 | 24371600 | SO_r025 | - | 5S ribosomal RNA |

4942692 | 4945584 | - | 2893 | 24371600 | SO_r026 | - | 23S ribosomal RNA |

4945901 | 4947429 | - | 1529 | 24371600 | SO_r027 | - | 16S ribosomal RNA |