Материалы:NC 008149

LOCUS NC_008149 4534590 bp DNA circular BCT 08-AUG-2007 DEFINITION Yersinia pestis Nepal516, complete genome. ACCESSION NC_008149 VERSION NC_008149.1 GI:108810166 KEYWORDS . SOURCE Yersinia pestis Nepal516 ORGANISM Yersinia pestis Nepal516 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia. REFERENCE 1 (bases 1 to 4534590) AUTHORS Chain,P.S., Hu,P., Malfatti,S.A., Radnedge,L., Larimer,F., Vergez,L.M., Worsham,P., Chu,M.C. and Andersen,G.L. TITLE Complete Genome Sequence of Yersinia pestis Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen JOURNAL J. Bacteriol. 188 (12), 4453-4463 (2006) PUBMED 16740952 REFERENCE 2 (bases 1 to 4534590) AUTHORS Barry,K., Lucas,S., Lapidus,A., Copeland,A., Detter,J.C., Glavina del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P., Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F., Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Yersinia pestis Nepal516 JOURNAL Unpublished REFERENCE 3 (bases 1 to 4534590) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-JUN-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 4534590) AUTHORS Barry,K., Lucas,S., Lapidus,A., Copeland,A., Detter,J.C., Glavina del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P., Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F., Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (06-APR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000305. URL -- http://www.jgi.doe.gov JGI Project ID: 2773192 Source DNA and bacteria available from Gary Andersen (glandersen@lbl.gov) Contacts: Gary Andersen (glandersen@lbl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by JGI-ORNL Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

12264 | 13808 | + | 1545 | 108810166 | YPN_r001 | - | 16S ribosomal RNA |

13943 | 14018 | + | 76 | 108810166 | YPN_r002 | - | 04 Glu tRNA
|

14271 | 17177 | + | 2907 | 108810166 | YPN_r003 | - | 23S ribosomal RNA |

17285 | 17404 | + | 120 | 108810166 | YPN_r004 | - | 5S ribosomal RNA |

17418 | 17493 | + | 76 | 108810166 | YPN_r005 | - | 12 Thr tRNA
|

17532 | 17651 | + | 120 | 108810166 | YPN_r005a | - | 5S ribosomal RNA |

80501 | 80761 | + | 261 | 108810166 | YPN_r006 | - | cobalamin riboswitch |

83991 | 85533 | + | 1543 | 108810166 | YPN_r007 | - | 16S ribosomal RNA |

85670 | 85745 | + | 76 | 108810166 | YPN_r008 | - | 04 Glu tRNA
|

85998 | 88904 | + | 2907 | 108810166 | YPN_r009 | - | 23S ribosomal RNA |

89012 | 89131 | + | 120 | 108810166 | YPN_r010 | - | 5S ribosomal RNA |

89255 | 89331 | + | 77 | 108810166 | YPN_r011 | - | 06 Asp tRNA
|

89340 | 89415 | + | 76 | 108810166 | YPN_r012 | - | 20 Trp tRNA
|

147974 | 148050 | + | 77 | 108810166 | YPN_r013 | - | 11 Arg tRNA
|

148134 | 148209 | + | 76 | 108810166 | YPN_r014 | - | 09 His tRNA
|

148226 | 148312 | + | 87 | 108810166 | YPN_r015 | - | 15 Leu tRNA
|

148388 | 148464 | + | 77 | 108810166 | YPN_r016 | - | 03 Pro tRNA
|

250375 | 251917 | + | 1543 | 108810166 | YPN_r017 | - | 16S ribosomal RNA |

252020 | 252096 | + | 77 | 108810166 | YPN_r018 | - | 14 Ile tRNA
|

252148 | 252223 | + | 76 | 108810166 | YPN_r019 | - | 02 Ala tRNA
|

252442 | 255348 | + | 2907 | 108810166 | YPN_r020 | - | 23S ribosomal RNA |

255447 | 255575 | + | 129 | 108810166 | YPN_r021 | - | 5S ribosomal RNA |

262132 | 262207 | + | 76 | 108810166 | YPN_r022 | - | 12 Thr tRNA
|

262226 | 262310 | + | 85 | 108810166 | YPN_r023 | - | 18 Tyr tRNA
|

262460 | 262534 | + | 75 | 108810166 | YPN_r024 | - | 01 Gly tRNA
|

262541 | 262616 | + | 76 | 108810166 | YPN_r025 | - | 12 Thr tRNA
|

293240 | 294782 | + | 1543 | 108810166 | YPN_r026 | - | 16S ribosomal RNA |

294919 | 294994 | + | 76 | 108810166 | YPN_r027 | - | 04 Glu tRNA
|

295247 | 298153 | + | 2907 | 108810166 | YPN_r028 | - | 23S ribosomal RNA |

298261 | 298380 | + | 120 | 108810166 | YPN_r029 | - | 5S ribosomal RNA |

306864 | 306970 | + | 107 | 108810166 | YPN_r030 | - | Spot 42 RNA |

308820 | 309074 | + | 255 | 108810166 | YPN_r031 | - | regulatory RNA CsrC |

366563 | 366649 | - | 87 | 108810166 | YPN_r032 | - | 15 Leu tRNA
|

608511 | 608587 | - | 77 | 108810166 | YPN_r033 | - | 16 Met tRNA
|

627242 | 627431 | + | 190 | 108810166 | YPN_r034 | - | FMN riboswitch |

706288 | 706461 | - | 174 | 108810166 | YPN_r035 | - | SraG RNA |

763209 | 763293 | + | 85 | 108810166 | YPN_r036 | - | 15 Leu tRNA
|

924640 | 924732 | + | 93 | 108810166 | YPN_r037 | - | 08 Ser tRNA
|

924741 | 924817 | + | 77 | 108810166 | YPN_r038 | - | 11 Arg tRNA
|

924875 | 924951 | + | 77 | 108810166 | YPN_r039 | - | 11 Arg tRNA
|

925031 | 925107 | + | 77 | 108810166 | YPN_r040 | - | 11 Arg tRNA
|

953365 | 954907 | + | 1543 | 108810166 | YPN_r041 | - | 16S ribosomal RNA |

955010 | 955086 | + | 77 | 108810166 | YPN_r042 | - | 14 Ile tRNA
|

955138 | 955213 | + | 76 | 108810166 | YPN_r043 | - | 02 Ala tRNA
|

955432 | 958338 | + | 2907 | 108810166 | YPN_r044 | - | 23S ribosomal RNA |

958446 | 958565 | + | 120 | 108810166 | YPN_r045 | - | 5S ribosomal RNA |

1107007 | 1107126 | + | 120 | 108810166 | YPN_r046 | - | SRP RNA |

1179290 | 1179366 | + | 77 | 108810166 | YPN_r047 | - | 11 Arg tRNA
|

1272072 | 1272146 | - | 75 | 108810166 | YPN_r048 | - | 05 Gln tRNA
|

1272152 | 1272228 | - | 77 | 108810166 | YPN_r049 | - | 16 Met tRNA
|

1272261 | 1272335 | - | 75 | 108810166 | YPN_r050 | - | 05 Gln tRNA
|

1272431 | 1272505 | - | 75 | 108810166 | YPN_r051 | - | 05 Gln tRNA
|

1272535 | 1272619 | - | 85 | 108810166 | YPN_r052 | - | 15 Leu tRNA
|

1272627 | 1272703 | - | 77 | 108810166 | YPN_r053 | - | 16 Met tRNA
|

1387990 | 1388154 | - | 165 | 108810166 | YPN_r054 | - | tke1 RNA |

1588507 | 1588582 | - | 76 | 108810166 | YPN_r055 | - | 02 Ala tRNA
|

1588660 | 1588735 | - | 76 | 108810166 | YPN_r056 | - | 02 Ala tRNA
|

1591367 | 1591442 | + | 76 | 108810166 | YPN_r057 | - | 13 Val tRNA
|

1591479 | 1591554 | + | 76 | 108810166 | YPN_r058 | - | 13 Val tRNA
|

1591599 | 1591674 | + | 76 | 108810166 | YPN_r059 | - | 13 Val tRNA
|

1591874 | 1591949 | + | 76 | 108810166 | YPN_r060 | - | 10 Lys tRNA
|

1707540 | 1707629 | - | 90 | 108810166 | YPN_r061 | - | 08 Ser tRNA
|

1715950 | 1716039 | - | 90 | 108810166 | YPN_r062 | - | 08 Ser tRNA
|

1849381 | 1849465 | - | 85 | 108810166 | YPN_r063 | - | 18 Tyr tRNA
|

2087229 | 2087305 | + | 77 | 108810166 | YPN_r064 | - | 13 Val tRNA
|

2087365 | 2087441 | + | 77 | 108810166 | YPN_r065 | - | 13 Val tRNA
|

2500260 | 2500334 | - | 75 | 108810166 | YPN_r067 | - | 11 Arg tRNA
|

2536627 | 2536712 | - | 86 | 108810166 | YPN_r068 | - | 15 Leu tRNA
|

2536723 | 2536796 | - | 74 | 108810166 | YPN_r069 | - | 19 Cys tRNA
|

2536849 | 2536924 | - | 76 | 108810166 | YPN_r070 | - | 01 Gly tRNA
|

2543373 | 2543448 | - | 76 | 108810166 | YPN_r071 | - | 10 Lys tRNA
|

2619107 | 2619356 | + | 250 | 108810166 | YPN_r072 | - | SraC_RyeA RNA |

2619151 | 2619246 | - | 96 | 108810166 | YPN_r073 | - | RyeB RNA |

2672982 | 2673057 | + | 76 | 108810166 | YPN_r074 | - | 07 Asn tRNA
|

2687286 | 2687361 | + | 76 | 108810166 | YPN_r075 | - | 07 Asn tRNA
|

2843940 | 2844027 | - | 88 | 108810166 | YPN_r076 | - | 08 Ser tRNA
|

3067066 | 3067142 | + | 77 | 108810166 | YPN_r077 | - | 03 Pro tRNA
|

3099191 | 3099266 | - | 76 | 108810166 | YPN_r078 | - | 12 Thr tRNA
|

3099272 | 3099359 | - | 88 | 108810166 | YPN_r079 | - | 08 Ser tRNA
|

3101831 | 3101965 | + | 135 | 108810166 | YPN_r080 | - | antisense RNA affecting ompF expression |

3230551 | 3230620 | - | 70 | 108810166 | YPN_r081 | - | Xaa tRNA |

3230649 | 3230724 | - | 76 | 108810166 | YPN_r082 | - | 10 Lys tRNA
|

3230752 | 3230827 | - | 76 | 108810166 | YPN_r083 | - | 10 Lys tRNA
|

3257923 | 3258286 | + | 364 | 108810166 | YPN_r084 | - | tmRNA |

3273690 | 3273766 | - | 77 | 108810166 | YPN_r085 | - | 06 Asp tRNA
|

3281057 | 3281133 | - | 77 | 108810166 | YPN_r086 | - | 06 Asp tRNA
|

3281257 | 3281376 | - | 120 | 108810166 | YPN_r087 | - | 5S ribosomal RNA |

3281484 | 3284390 | - | 2907 | 108810166 | YPN_r088 | - | 23S ribosomal RNA |

3284643 | 3284718 | - | 76 | 108810166 | YPN_r089 | - | 04 Glu tRNA
|

3284855 | 3286397 | - | 1543 | 108810166 | YPN_r090 | - | 16S ribosomal RNA |

3327216 | 3327497 | - | 282 | 108810166 | YPN_r091 | - | regulatory RNA csrB |

3339485 | 3339561 | + | 77 | 108810166 | YPN_r092 | - | 16 Met tRNA
|

3339685 | 3339761 | + | 77 | 108810166 | YPN_r093 | - | 16 Met tRNA
|

3469332 | 3469405 | - | 74 | 108810166 | YPN_r094 | - | 01 Gly tRNA
|

3499848 | 3500029 | + | 182 | 108810166 | YPN_r095 | - | 6S ribosomal RNA |

3559830 | 3559905 | + | 76 | 108810166 | YPN_r096 | - | 17 Phe tRNA
|

3701919 | 3701995 | - | 77 | 108810166 | YPN_r097 | - | 16 Met tRNA
|

3702056 | 3702142 | - | 87 | 108810166 | YPN_r098 | - | 15 Leu tRNA
|

3766790 | 3766865 | - | 76 | 108810166 | YPN_r099 | - | 01 Gly tRNA
|

3766957 | 3767032 | - | 76 | 108810166 | YPN_r100 | - | 01 Gly tRNA
|

3796802 | 3796877 | + | 76 | 108810166 | YPN_r101 | - | 17 Phe tRNA
|

3901359 | 3901478 | - | 120 | 108810166 | YPN_r102 | - | 5S ribosomal RNA |

3901586 | 3904492 | - | 2907 | 108810166 | YPN_r103 | - | 23S ribosomal RNA |

3904745 | 3904820 | - | 76 | 108810166 | YPN_r104 | - | 04 Glu tRNA
|

3904957 | 3906499 | - | 1543 | 108810166 | YPN_r105 | - | 16S ribosomal RNA |

3912327 | 3912701 | - | 375 | 108810166 | YPN_r106 | - | RNA component of RNaseP |

4193176 | 4193252 | - | 77 | 108810166 | YPN_r107 | - | 03 Pro tRNA
|

4223558 | 4223648 | - | 91 | 108810166 | YPN_r108 | - | Sec tRNA |