Материалы:NC 007643

LOCUS NC_007643 4352825 bp DNA circular BCT 03-APR-2006 DEFINITION Rhodospirillum rubrum ATCC 11170, complete genome. ACCESSION NC_007643 VERSION NC_007643.1 GI:83591340 KEYWORDS . SOURCE Rhodospirillum rubrum ATCC 11170 ORGANISM Rhodospirillum rubrum ATCC 11170 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum. REFERENCE 1 (bases 1 to 4352825) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K., Richardson,P., Zhang,Y., Roberts,G., Reslewic,S., Zhou,S. and Schwartz,D.C. TITLE Complete sequence of the chromosome of Rhodospirillum rubrum ATCC 11170 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4352825) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-DEC-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4352825) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Mavrommatis,K. and Richardson,P. TITLE Direct Submission JOURNAL Submitted (08-DEC-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000230. URL -- http://www.jgi.doe.gov Source DNA available from Gary Roberts (groberts@bact.wisc.edu) Bacteria available from ATCC: ATCC 11170 Contacts: Gary Roberts (groberts@bact.wisc.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

17016 | 17102 | - | 87 | 83591340 | Rru_AR0001 | - | 15 Leu tRNA
|

117325 | 117401 | - | 77 | 83591340 | Rru_AR0002 | - | 11 Arg tRNA
|

151241 | 151317 | + | 77 | 83591340 | Rru_AR0003 | - | 11 Arg tRNA
|

192528 | 194004 | + | 1477 | 83591340 | Rru_AR0004 | - | 16S ribosomal RNA |

194189 | 194265 | + | 77 | 83591340 | Rru_AR0005 | - | 14 Ile tRNA
|

194332 | 194407 | + | 76 | 83591340 | Rru_AR0006 | - | 02 Ala tRNA
|

194770 | 197527 | + | 2758 | 83591340 | Rru_AR0007 | - | 23S ribosomal RNA |

197647 | 197761 | + | 115 | 83591340 | Rru_AR0008 | - | 5S ribosomal RNA |

197858 | 197934 | + | 77 | 83591340 | Rru_AR0009 | - | 16 Met tRNA
|

306906 | 306979 | + | 74 | 83591340 | Rru_AR0010 | - | 05 Gln tRNA
|

324100 | 324174 | - | 75 | 83591340 | Rru_AR0011 | - | 05 Gln tRNA
|

363106 | 363181 | + | 76 | 83591340 | Rru_AR0012 | - | 02 Ala tRNA
|

363384 | 363459 | + | 76 | 83591340 | Rru_AR0013 | - | 02 Ala tRNA
|

407699 | 407790 | + | 92 | 83591340 | Rru_AR0014 | - | 08 Ser tRNA
|

468041 | 468126 | - | 86 | 83591340 | Rru_AR0015 | - | 15 Leu tRNA
|

559697 | 559772 | + | 76 | 83591340 | Rru_AR0016 | - | 10 Lys tRNA
|

795406 | 795496 | + | 91 | 83591340 | Rru_AR0017 | - | 08 Ser tRNA
|

911398 | 912874 | + | 1477 | 83591340 | Rru_AR0018 | - | 16S ribosomal RNA |

913057 | 913133 | + | 77 | 83591340 | Rru_AR0019 | - | 14 Ile tRNA
|

913200 | 913275 | + | 76 | 83591340 | Rru_AR0020 | - | 02 Ala tRNA
|

913637 | 916394 | + | 2758 | 83591340 | Rru_AR0021 | - | 23S ribosomal RNA |

916513 | 916627 | + | 115 | 83591340 | Rru_AR0022 | - | 5S ribosomal RNA |

916723 | 916799 | + | 77 | 83591340 | Rru_AR0023 | - | 16 Met tRNA
|

1145454 | 1145802 | - | 349 | 83591340 | Rru_AR0024 | - | RNA component of RNase P |

1160163 | 1160238 | + | 76 | 83591340 | Rru_AR0025 | - | 04 Glu tRNA
|

1465406 | 1465495 | + | 90 | 83591340 | Rru_AR0026 | - | 08 Ser tRNA
|

1792276 | 1792351 | - | 76 | 83591340 | Rru_AR0027 | - | 04 Glu tRNA
|

1825837 | 1825921 | + | 85 | 83591340 | Rru_AR0028 | - | 15 Leu tRNA
|

1833693 | 1833768 | + | 76 | 83591340 | Rru_AR0029 | - | 13 Val tRNA
|

1934224 | 1934300 | + | 77 | 83591340 | Rru_AR0030 | - | 03 Pro tRNA
|

1934676 | 1934752 | + | 77 | 83591340 | Rru_AR0031 | - | 11 Arg tRNA
|

1960034 | 1960110 | + | 77 | 83591340 | Rru_AR0032 | - | 03 Pro tRNA
|

1998244 | 1998333 | + | 90 | 83591340 | Rru_AR0033 | - | 08 Ser tRNA
|

2032987 | 2033062 | - | 76 | 83591340 | Rru_AR0034 | - | 10 Lys tRNA
|

2094273 | 2094346 | + | 74 | 83591340 | Rru_AR0035 | - | 19 Cys tRNA
|

2094428 | 2094502 | + | 75 | 83591340 | Rru_AR0036 | - | 07 Asn tRNA
|

2305924 | 2306010 | - | 87 | 83591340 | Rru_AR0037 | - | 15 Leu tRNA
|

2331595 | 2331671 | + | 77 | 83591340 | Rru_AR0038 | - | 16 Met tRNA
|

2412007 | 2412083 | - | 77 | 83591340 | Rru_AR0039 | - | 09 His tRNA
|

2560697 | 2560938 | + | 242 | 83591340 | Rru_AR0040 | - | tmRNA, 10Sa RNA |

2731721 | 2731797 | - | 77 | 83591340 | Rru_AR0041 | - | 16 Met tRNA
|

2731893 | 2732007 | - | 115 | 83591340 | Rru_AR0042 | - | 5S ribosomal RNA |

2732127 | 2734884 | - | 2758 | 83591340 | Rru_AR0043 | - | 23S ribosomal RNA |

2735247 | 2735322 | - | 76 | 83591340 | Rru_AR0044 | - | 02 Ala tRNA
|

2735389 | 2735465 | - | 77 | 83591340 | Rru_AR0045 | - | 14 Ile tRNA
|

2735650 | 2737126 | - | 1477 | 83591340 | Rru_AR0046 | - | 16S ribosomal RNA |

2962229 | 2962303 | - | 75 | 83591340 | Rru_AR0047 | - | 13 Val tRNA
|

3125185 | 3125260 | - | 76 | 83591340 | Rru_AR0048 | - | 20 Trp tRNA
|

3126888 | 3126961 | - | 74 | 83591340 | Rru_AR0049 | - | 01 Gly tRNA
|

3126989 | 3127074 | - | 86 | 83591340 | Rru_AR0050 | - | 18 Tyr tRNA
|

3128216 | 3128291 | + | 76 | 83591340 | Rru_AR0051 | - | 12 Thr tRNA
|

3194938 | 3195013 | - | 76 | 83591340 | Rru_AR0052 | - | 17 Phe tRNA
|

3322206 | 3322281 | - | 76 | 83591340 | Rru_AR0053 | - | 16 Met tRNA
|

3378255 | 3378329 | + | 75 | 83591340 | Rru_AR0054 | - | 12 Thr tRNA
|

3378495 | 3378569 | + | 75 | 83591340 | Rru_AR0055 | - | 12 Thr tRNA
|

3379605 | 3379681 | + | 77 | 83591340 | Rru_AR0056 | - | 06 Asp tRNA
|

3399757 | 3399833 | - | 77 | 83591340 | Rru_AR0057 | - | 03 Pro tRNA
|

3491233 | 3491307 | + | 75 | 83591340 | Rru_AR0058 | - | 13 Val tRNA
|

3719917 | 3719990 | - | 74 | 83591340 | Rru_AR0059 | - | 01 Gly tRNA
|

3806944 | 3807058 | - | 115 | 83591340 | Rru_AR0060 | - | 5S ribosomal RNA |

3807175 | 3809932 | - | 2758 | 83591340 | Rru_AR0061 | - | 23S ribosomal RNA |

3810295 | 3810370 | - | 76 | 83591340 | Rru_AR0062 | - | 02 Ala tRNA
|

3810437 | 3810513 | - | 77 | 83591340 | Rru_AR0063 | - | 14 Ile tRNA
|

3810698 | 3812174 | - | 1477 | 83591340 | Rru_AR0064 | - | 16S ribosomal RNA |

3825931 | 3826007 | - | 77 | 83591340 | Rru_AR0065 | - | 11 Arg tRNA
|

3998595 | 3998694 | - | 100 | 83591340 | Rru_AR0066 | - | SRP RNA, 4.5S RNA |

4023191 | 4023277 | - | 87 | 83591340 | Rru_AR0067 | - | 15 Leu tRNA
|

4059305 | 4059380 | + | 76 | 83591340 | Rru_AR0068 | - | 02 Ala tRNA
|

4108039 | 4108113 | - | 75 | 83591340 | Rru_AR0069 | - | 12 Thr tRNA
|

4262308 | 4262382 | + | 75 | 83591340 | Rru_AR0070 | - | 01 Gly tRNA
|