Материалы:NC 008345

LOCUS NC_008345 4845257 bp DNA circular BCT 15-SEP-2006 DEFINITION Shewanella frigidimarina NCIMB 400, complete genome. ACCESSION NC_008345 VERSION NC_008345.1 GI:114561188 KEYWORDS . SOURCE Shewanella frigidimarina NCIMB 400 ORGANISM Shewanella frigidimarina NCIMB 400 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella. REFERENCE 1 (bases 1 to 4845257) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Fredrickson,J.K., Kolker,E., McCuel,L.A., DiChristina,T., Nealson,K.H., Newman,D., Tiedje,J.M., Zhou,J., Romine,M.F., Culley,D.E., Serres,M., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Shewanella frigidimarina NCIMB 400 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4845257) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4845257) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Fredrickson,J.K., Kolker,E., McCuel,L.A., DiChristina,T., Nealson,K.H., Newman,D., Tiedje,J.M., Zhou,J., Romine,M.F., Culley,D.E., Serres,M., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (24-AUG-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000447. URL -- http://www.jgi.doe.gov JGI Project ID: 3634606 Source DNA and bacteria available from James K. Fredrickson (Jim.fredrickson@pnl.gov) Bacteria also available from NCIMB:NCIMB 400 Contacts: James K. Fredrickson (Jim.fredrickson@pnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

42023 | 43557 | + | 1535 | 114561188 | Sfri_R0001 | - | 16S ribosomal RNA |

43945 | 46860 | + | 2916 | 114561188 | Sfri_R0002 | - | 23S ribosomal RNA |

47003 | 47124 | + | 122 | 114561188 | Sfri_R0003 | - | 5S ribosomal RNA |

141671 | 143205 | + | 1535 | 114561188 | Sfri_R0004 | - | 16S ribosomal RNA |

143295 | 143371 | + | 77 | 114561188 | Sfri_R0005 | - | 14 Ile tRNA
|

143517 | 143592 | + | 76 | 114561188 | Sfri_R0006 | - | 02 Ala tRNA
|

143928 | 146843 | + | 2916 | 114561188 | Sfri_R0007 | - | 23S ribosomal RNA |

146986 | 147107 | + | 122 | 114561188 | Sfri_R0008 | - | 5S ribosomal RNA |

151770 | 151845 | + | 76 | 114561188 | Sfri_R0009 | - | 12 Thr tRNA
|

151853 | 151937 | + | 85 | 114561188 | Sfri_R0010 | - | 18 Tyr tRNA
|

151973 | 152046 | + | 74 | 114561188 | Sfri_R0011 | - | 01 Gly tRNA
|

152056 | 152131 | + | 76 | 114561188 | Sfri_R0012 | - | 14 Ile tRNA
|

194560 | 196094 | + | 1535 | 114561188 | Sfri_R0013 | - | 16S ribosomal RNA |

196482 | 199397 | + | 2916 | 114561188 | Sfri_R0014 | - | 23S ribosomal RNA |

199536 | 199657 | + | 122 | 114561188 | Sfri_R0015 | - | 5S ribosomal RNA |

199760 | 199836 | + | 77 | 114561188 | Sfri_R0016 | - | 06 Asp tRNA
|

420382 | 420681 | + | 300 | 114561188 | Sfri_R0017 | - | RNA component of RNaseP |

473790 | 473866 | + | 77 | 114561188 | Sfri_R0018 | - | 11 Arg tRNA
|

473918 | 473993 | + | 76 | 114561188 | Sfri_R0019 | - | 09 His tRNA
|

474015 | 474091 | + | 77 | 114561188 | Sfri_R0020 | - | 03 Pro tRNA
|

474157 | 474233 | + | 77 | 114561188 | Sfri_R0021 | - | 03 Pro tRNA
|

474297 | 474373 | + | 77 | 114561188 | Sfri_R0022 | - | 03 Pro tRNA
|

575178 | 575262 | + | 85 | 114561188 | Sfri_R0023 | - | 15 Leu tRNA
|

668906 | 669050 | + | 145 | 114561188 | Sfri_R0024 | - | |

777366 | 777452 | - | 87 | 114561188 | Sfri_R0025 | - | 15 Leu tRNA
|

777512 | 777587 | - | 76 | 114561188 | Sfri_R0026 | - | 17 Phe tRNA
|

785406 | 786940 | + | 1535 | 114561188 | Sfri_R0027 | - | 16S ribosomal RNA |

787328 | 790242 | + | 2915 | 114561188 | Sfri_R0028 | - | 23S ribosomal RNA |

790385 | 790506 | + | 122 | 114561188 | Sfri_R0029 | - | 5S ribosomal RNA |

793280 | 794814 | + | 1535 | 114561188 | Sfri_R0030 | - | 16S ribosomal RNA |

795202 | 798117 | + | 2916 | 114561188 | Sfri_R0031 | - | 23S ribosomal RNA |

798260 | 798381 | + | 122 | 114561188 | Sfri_R0032 | - | 5S ribosomal RNA |

800254 | 800330 | + | 77 | 114561188 | Sfri_R0033 | - | 20 Trp tRNA
|

843284 | 843360 | + | 77 | 114561188 | Sfri_R0034 | - | 16 Met tRNA
|

843406 | 843490 | + | 85 | 114561188 | Sfri_R0035 | - | 15 Leu tRNA
|

843536 | 843610 | + | 75 | 114561188 | Sfri_R0036 | - | 05 Gln tRNA
|

843634 | 843708 | + | 75 | 114561188 | Sfri_R0037 | - | 05 Gln tRNA
|

843714 | 843790 | + | 77 | 114561188 | Sfri_R0038 | - | 16 Met tRNA
|

843884 | 843968 | + | 85 | 114561188 | Sfri_R0039 | - | 15 Leu tRNA
|

844017 | 844091 | + | 75 | 114561188 | Sfri_R0040 | - | 05 Gln tRNA
|

1153446 | 1153532 | + | 87 | 114561188 | Sfri_R0041 | - | 15 Leu tRNA
|

1153614 | 1153689 | + | 76 | 114561188 | Sfri_R0042 | - | 16 Met tRNA
|

1160053 | 1160165 | + | 113 | 114561188 | Sfri_R0043 | - | |

1257132 | 1257223 | + | 92 | 114561188 | Sfri_R0044 | - | 08 Ser tRNA
|

1257246 | 1257322 | + | 77 | 114561188 | Sfri_R0045 | - | 11 Arg tRNA
|

1257350 | 1257426 | + | 77 | 114561188 | Sfri_R0046 | - | 11 Arg tRNA
|

1257455 | 1257531 | + | 77 | 114561188 | Sfri_R0047 | - | 11 Arg tRNA
|

1257540 | 1257631 | + | 92 | 114561188 | Sfri_R0048 | - | 08 Ser tRNA
|

1257705 | 1257781 | + | 77 | 114561188 | Sfri_R0049 | - | 11 Arg tRNA
|

1293003 | 1293358 | - | 356 | 114561188 | Sfri_R0050 | - | tmRNA |

1363511 | 1363586 | + | 76 | 114561188 | Sfri_R0051 | - | 11 Arg tRNA
|

1504073 | 1504225 | + | 153 | 114561188 | Sfri_R0052 | - | |

1715302 | 1715387 | + | 86 | 114561188 | Sfri_R0053 | - | 15 Leu tRNA
|

1749039 | 1749114 | + | 76 | 114561188 | Sfri_R0054 | - | 10 Lys tRNA
|

1749240 | 1749315 | + | 76 | 114561188 | Sfri_R0055 | - | 10 Lys tRNA
|

1749441 | 1749516 | + | 76 | 114561188 | Sfri_R0056 | - | 10 Lys tRNA
|

1749642 | 1749717 | + | 76 | 114561188 | Sfri_R0057 | - | 10 Lys tRNA
|

1749843 | 1749918 | + | 76 | 114561188 | Sfri_R0058 | - | 10 Lys tRNA
|

1750044 | 1750119 | + | 76 | 114561188 | Sfri_R0059 | - | 10 Lys tRNA
|

1818512 | 1818619 | + | 108 | 114561188 | Sfri_R0060 | - | |

1849550 | 1851084 | + | 1535 | 114561188 | Sfri_R0061 | - | 16S ribosomal RNA |

1851303 | 1851379 | + | 77 | 114561188 | Sfri_R0062 | - | 14 Ile tRNA
|

1851529 | 1851604 | + | 76 | 114561188 | Sfri_R0063 | - | 02 Ala tRNA
|

1851941 | 1854856 | + | 2916 | 114561188 | Sfri_R0064 | - | 23S ribosomal RNA |

1855054 | 1855175 | + | 122 | 114561188 | Sfri_R0065 | - | 5S ribosomal RNA |

2127062 | 2127151 | + | 90 | 114561188 | Sfri_R0066 | - | 08 Ser tRNA
|

2222173 | 2222257 | - | 85 | 114561188 | Sfri_R0067 | - | 18 Tyr tRNA
|

2222288 | 2222372 | - | 85 | 114561188 | Sfri_R0068 | - | 18 Tyr tRNA
|

2222460 | 2222544 | - | 85 | 114561188 | Sfri_R0069 | - | 18 Tyr tRNA
|

2306048 | 2306123 | + | 76 | 114561188 | Sfri_R0070 | - | 01 Gly tRNA
|

2306166 | 2306239 | + | 74 | 114561188 | Sfri_R0071 | - | 19 Cys tRNA
|

2306289 | 2306374 | + | 86 | 114561188 | Sfri_R0072 | - | 15 Leu tRNA
|

2404762 | 2404838 | + | 77 | 114561188 | Sfri_R0073 | - | 13 Val tRNA
|

2404887 | 2404963 | + | 77 | 114561188 | Sfri_R0074 | - | 13 Val tRNA
|

2563286 | 2563375 | - | 90 | 114561188 | Sfri_R0075 | - | 08 Ser tRNA
|

2596094 | 2596169 | + | 76 | 114561188 | Sfri_R0076 | - | 07 Asn tRNA
|

2596203 | 2596278 | + | 76 | 114561188 | Sfri_R0077 | - | 07 Asn tRNA
|

2596302 | 2596377 | + | 76 | 114561188 | Sfri_R0078 | - | 07 Asn tRNA
|

2596407 | 2596482 | + | 76 | 114561188 | Sfri_R0079 | - | 07 Asn tRNA
|

2596516 | 2596591 | + | 76 | 114561188 | Sfri_R0080 | - | 07 Asn tRNA
|

2632886 | 2632985 | - | 100 | 114561188 | Sfri_R0081 | - | |

2636128 | 2636204 | - | 77 | 114561188 | Sfri_R0082 | - | 06 Asp tRNA
|

2636285 | 2636361 | - | 77 | 114561188 | Sfri_R0083 | - | 06 Asp tRNA
|

2981097 | 2981173 | + | 77 | 114561188 | Sfri_R0084 | - | 03 Pro tRNA
|

3107614 | 3107689 | - | 76 | 114561188 | Sfri_R0085 | - | 09 His tRNA
|

3107698 | 3107774 | - | 77 | 114561188 | Sfri_R0086 | - | 11 Arg tRNA
|

3107860 | 3107936 | - | 77 | 114561188 | Sfri_R0087 | - | 03 Pro tRNA
|

3154683 | 3154797 | - | 115 | 114561188 | Sfri_R0088 | - | SRP RNA; RNA component of signal recognition particle |

3174166 | 3174251 | - | 86 | 114561188 | Sfri_R0089 | - | 15 Leu tRNA
|

3174301 | 3174374 | - | 74 | 114561188 | Sfri_R0090 | - | 19 Cys tRNA
|

3174416 | 3174491 | - | 76 | 114561188 | Sfri_R0091 | - | 01 Gly tRNA
|

3187709 | 3187798 | - | 90 | 114561188 | Sfri_R0092 | - | 08 Ser tRNA
|

3197419 | 3197494 | + | 76 | 114561188 | Sfri_R0093 | - | 16 Met tRNA
|

3197540 | 3197615 | + | 76 | 114561188 | Sfri_R0094 | - | 16 Met tRNA
|

3197661 | 3197736 | + | 76 | 114561188 | Sfri_R0095 | - | 16 Met tRNA
|

3197783 | 3197858 | + | 76 | 114561188 | Sfri_R0096 | - | 16 Met tRNA
|

3198189 | 3198264 | + | 76 | 114561188 | Sfri_R0097 | - | 16 Met tRNA
|

3261000 | 3261075 | - | 76 | 114561188 | Sfri_R0098 | - | 13 Val tRNA
|

3261110 | 3261185 | - | 76 | 114561188 | Sfri_R0099 | - | 13 Val tRNA
|

3261213 | 3261288 | - | 76 | 114561188 | Sfri_R0100 | - | 13 Val tRNA
|

3261330 | 3261405 | - | 76 | 114561188 | Sfri_R0101 | - | 13 Val tRNA
|

3261438 | 3261513 | - | 76 | 114561188 | Sfri_R0102 | - | 13 Val tRNA
|

3261553 | 3261628 | - | 76 | 114561188 | Sfri_R0103 | - | 13 Val tRNA
|

3263399 | 3263474 | + | 76 | 114561188 | Sfri_R0104 | - | 02 Ala tRNA
|

3263753 | 3263828 | + | 76 | 114561188 | Sfri_R0105 | - | 04 Glu tRNA
|

3263961 | 3264036 | + | 76 | 114561188 | Sfri_R0106 | - | 04 Glu tRNA
|

3264347 | 3264422 | + | 76 | 114561188 | Sfri_R0107 | - | 04 Glu tRNA
|

3264555 | 3264630 | + | 76 | 114561188 | Sfri_R0108 | - | 04 Glu tRNA
|

3264762 | 3264837 | + | 76 | 114561188 | Sfri_R0109 | - | 04 Glu tRNA
|

3264970 | 3265045 | + | 76 | 114561188 | Sfri_R0110 | - | 04 Glu tRNA
|

3265082 | 3265157 | + | 76 | 114561188 | Sfri_R0111 | - | 02 Ala tRNA
|

3459744 | 3459819 | + | 76 | 114561188 | Sfri_R0112 | - | 17 Phe tRNA
|

3459826 | 3459901 | + | 76 | 114561188 | Sfri_R0113 | - | 12 Thr tRNA
|

3597796 | 3597872 | + | 77 | 114561188 | Sfri_R0114 | - | 16 Met tRNA
|

3963093 | 3963168 | - | 76 | 114561188 | Sfri_R0115 | - | 01 Gly tRNA
|

3963272 | 3963347 | - | 76 | 114561188 | Sfri_R0116 | - | 01 Gly tRNA
|

3963441 | 3963516 | - | 76 | 114561188 | Sfri_R0117 | - | 01 Gly tRNA
|

4291949 | 4292038 | + | 90 | 114561188 | Sfri_R0118 | - | 08 Ser tRNA
|

4512241 | 4512362 | - | 122 | 114561188 | Sfri_R0119 | - | 5S ribosomal RNA |

4512505 | 4515420 | - | 2916 | 114561188 | Sfri_R0120 | - | 23S ribosomal RNA |

4515808 | 4517342 | - | 1535 | 114561188 | Sfri_R0121 | - | 16S ribosomal RNA |

4519940 | 4520061 | - | 122 | 114561188 | Sfri_R0122 | - | 5S ribosomal RNA |

4520094 | 4520169 | - | 76 | 114561188 | Sfri_R0123 | - | 12 Thr tRNA
|

4520196 | 4520317 | - | 122 | 114561188 | Sfri_R0124 | - | 5S ribosomal RNA |

4520460 | 4523375 | - | 2916 | 114561188 | Sfri_R0125 | - | 23S ribosomal RNA |

4523711 | 4523786 | - | 76 | 114561188 | Sfri_R0126 | - | 02 Ala tRNA
|

4523920 | 4523996 | - | 77 | 114561188 | Sfri_R0127 | - | 14 Ile tRNA
|

4524086 | 4525620 | - | 1535 | 114561188 | Sfri_R0128 | - | 16S ribosomal RNA |

4620263 | 4620432 | + | 170 | 114561188 | Sfri_R0129 | - | |

4799016 | 4799092 | - | 77 | 114561188 | Sfri_R0130 | - | 06 Asp tRNA
|

4799195 | 4799316 | - | 122 | 114561188 | Sfri_R0131 | - | 5S ribosomal RNA |

4799459 | 4802374 | - | 2916 | 114561188 | Sfri_R0132 | - | 23S ribosomal RNA |

4802761 | 4804295 | - | 1535 | 114561188 | Sfri_R0133 | - | 16S ribosomal RNA |