Материалы:NC 007484

LOCUS NC_007484 3481691 bp DNA circular BCT 16-AUG-2007 DEFINITION Nitrosococcus oceani ATCC 19707, complete genome. ACCESSION NC_007484 VERSION NC_007484.1 GI:77163561 KEYWORDS . SOURCE Nitrosococcus oceani ATCC 19707 ORGANISM Nitrosococcus oceani ATCC 19707 Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus. REFERENCE 1 (bases 1 to 3481691) AUTHORS Klotz,M.G., Arp,D.J., Chain,P.S., El-Sheikh,A.F., Hauser,L.J., Hommes,N.G., Larimer,F.W., Malfatti,S.A., Norton,J.M., Poret-Peterson,A.T., Vergez,L.M. and Ward,B.B. TITLE Complete genome sequence of the marine, chemolithoautotrophic, ammonia-oxidizing bacterium Nitrosococcus oceani ATCC 19707 JOURNAL Appl. Environ. Microbiol. 72 (9), 6299-6315 (2006) PUBMED 16957257 REFERENCE 2 (bases 1 to 3481691) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-OCT-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3481691) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (21-SEP-2005) US DOE Joint Genome Institute, 2400 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000127. URL -- http://www.jgi.doe.gov Source DNA available from Dan Arp (arpd@bcc.orst.edu) Bacteria available from ATCC: ATCC 19707 Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

45036 | 45111 | + | 76 | 77163561 | Noc_R0001 | - | 16 Met tRNA
|

159954 | 160029 | + | 76 | 77163561 | Noc_R0002 | - | 10 Lys tRNA
|

208097 | 208171 | + | 75 | 77163561 | Noc_R0003 | - | 12 Thr tRNA
|

216418 | 216494 | + | 77 | 77163561 | Noc_R0004 | - | 11 Arg tRNA
|

555188 | 555262 | + | 75 | 77163561 | Noc_R0005 | - | 05 Gln tRNA
|

558871 | 558947 | + | 77 | 77163561 | Noc_R0006 | - | 16 Met tRNA
|

595004 | 595095 | - | 92 | 77163561 | Noc_R0007 | - | 08 Ser tRNA
|

958482 | 958558 | - | 77 | 77163561 | Noc_R0008 | - | 11 Arg tRNA
|

964957 | 965031 | - | 75 | 77163561 | Noc_R0009 | - | 04 Glu tRNA
|

999383 | 1000873 | + | 1491 | 77163561 | Noc_R0010 | - | 16S ribosomal RNA |

1001173 | 1001249 | + | 77 | 77163561 | Noc_R0011 | - | 14 Ile tRNA
|

1001312 | 1001387 | + | 76 | 77163561 | Noc_R0012 | - | 02 Ala tRNA
|

1001588 | 1004500 | + | 2913 | 77163561 | Noc_R0013 | - | 23S ribosomal RNA |

1004558 | 1004672 | + | 115 | 77163561 | Noc_R0014 | - | 5S ribosomal RNA |

1025673 | 1025765 | + | 93 | 77163561 | Noc_R0015 | - | 08 Ser tRNA
|

1244577 | 1244652 | - | 76 | 77163561 | Noc_R0016 | - | 07 Asn tRNA
|

1248128 | 1248204 | + | 77 | 77163561 | Noc_R0017 | - | 13 Val tRNA
|

1255607 | 1255683 | + | 77 | 77163561 | Noc_R0018 | - | 03 Pro tRNA
|

1261574 | 1261647 | + | 74 | 77163561 | Noc_R0019 | - | 01 Gly tRNA
|

1307217 | 1307577 | + | 361 | 77163561 | Noc_R0020 | - | tmRNA |

1837239 | 1837312 | - | 74 | 77163561 | Noc_R0021 | - | 19 Cys tRNA
|

1837367 | 1837442 | - | 76 | 77163561 | Noc_R0022 | - | 01 Gly tRNA
|

1840493 | 1840579 | - | 87 | 77163561 | Noc_R0023 | - | 15 Leu tRNA
|

1849376 | 1849465 | + | 90 | 77163561 | Noc_R0024 | - | 08 Ser tRNA
|

1871585 | 1871670 | - | 86 | 77163561 | Noc_R0025 | - | 15 Leu tRNA
|

1879904 | 1880018 | - | 115 | 77163561 | Noc_R0026 | - | 5S ribosomal RNA |

1880076 | 1882988 | - | 2913 | 77163561 | Noc_R0027 | - | 23S ribosomal RNA |

1883213 | 1884703 | - | 1491 | 77163561 | Noc_R0028 | - | 16S ribosomal RNA |

1931655 | 1931730 | + | 76 | 77163561 | Noc_R0029 | - | 02 Ala tRNA
|

1931781 | 1931857 | + | 77 | 77163561 | Noc_R0030 | - | 04 Glu tRNA
|

1997133 | 1997209 | - | 77 | 77163561 | Noc_R0031 | - | 06 Asp tRNA
|

1997233 | 1997308 | - | 76 | 77163561 | Noc_R0032 | - | 13 Val tRNA
|

2170474 | 2170549 | - | 76 | 77163561 | Noc_R0033 | - | 12 Thr tRNA
|

2305013 | 2305089 | - | 77 | 77163561 | Noc_R0034 | - | 11 Arg tRNA
|

2445514 | 2445590 | - | 77 | 77163561 | Noc_R0035 | - | 16 Met tRNA
|

2586512 | 2586583 | - | 72 | 77163561 | Noc_R0036 | - | 08 Ser tRNA
|

2593020 | 2593095 | - | 76 | 77163561 | Noc_R0037 | - | 10 Lys tRNA
|

2593177 | 2593252 | - | 76 | 77163561 | Noc_R0038 | - | 09 His tRNA
|

2595836 | 2595912 | - | 77 | 77163561 | Noc_R0039 | - | 11 Arg tRNA
|

2595971 | 2596047 | - | 77 | 77163561 | Noc_R0040 | - | 03 Pro tRNA
|

2681660 | 2681735 | - | 76 | 77163561 | Noc_R0041 | - | 20 Trp tRNA
|

2683129 | 2683204 | - | 76 | 77163561 | Noc_R0042 | - | 12 Thr tRNA
|

2683252 | 2683325 | - | 74 | 77163561 | Noc_R0043 | - | 01 Gly tRNA
|

2683394 | 2683478 | - | 85 | 77163561 | Noc_R0044 | - | 18 Tyr tRNA
|

2779995 | 2780069 | + | 75 | 77163561 | Noc_R0045 | - | 13 Val tRNA
|

2916824 | 2916908 | - | 85 | 77163561 | Noc_R0046 | - | 15 Leu tRNA
|

2947145 | 2947235 | + | 91 | 77163561 | Noc_R0047 | - | 08 Ser tRNA
|

2947867 | 2947984 | + | 118 | 77163561 | Noc_R0048 | - | SRP RNA; RNA component of signal recognition |

3041560 | 3041635 | + | 76 | 77163561 | Noc_R0049 | - | 02 Ala tRNA
|

3213890 | 3213963 | + | 74 | 77163561 | Noc_R0050 | - | 05 Gln tRNA
|

3251301 | 3251597 | - | 297 | 77163561 | Noc_R0051 | - | RNA component of RNaseP |

3277718 | 3277804 | + | 87 | 77163561 | Noc_R0052 | - | 15 Leu tRNA
|

3306888 | 3306963 | + | 76 | 77163561 | Noc_R0053 | - | 17 Phe tRNA
|

3429057 | 3429133 | - | 77 | 77163561 | Noc_R0054 | - | 03 Pro tRNA
|