Материалы:NC 009901

LOCUS NC_009901 5174581 bp DNA circular BCT 09-OCT-2007 DEFINITION Shewanella pealeana ATCC 700345, complete genome. ACCESSION NC_009901 VERSION NC_009901.1 GI:157959830 KEYWORDS . SOURCE Shewanella pealeana ATCC 700345 ORGANISM Shewanella pealeana ATCC 700345 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella. REFERENCE 1 (bases 1 to 5174581) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Zhao,J.-S.Z., Manno,D., Hawari,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Shewanella pealeana ATCC 700345 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5174581) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5174581) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Zhao,J.-S.Z., Manno,D., Hawari,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (02-OCT-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000851. URL -- http://www.jgi.doe.gov JGI Project ID: 4002761 Source DNA and bacteria available from Jian-Shen Zhao (jian-shen.zhao@cnrc-nrc.gc.ca) Contacts: Jian-Shen Zhao (jian-shen.zhao@cnrc-nrc.gc.ca) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

45147 | 46681 | + | 1535 | 157959830 | Spea_R0001 | - | 16S ribosomal RNA |

47032 | 49926 | + | 2895 | 157959830 | Spea_R0002 | - | 23S ribosomal RNA |

50059 | 50174 | + | 116 | 157959830 | Spea_R0003 | - | 5S ribosomal RNA |

51501 | 53035 | + | 1535 | 157959830 | Spea_R0004 | - | 16S ribosomal RNA |

53386 | 56280 | + | 2895 | 157959830 | Spea_R0005 | - | 23S ribosomal RNA |

56413 | 56528 | + | 116 | 157959830 | Spea_R0006 | - | 5S ribosomal RNA |

182282 | 183816 | + | 1535 | 157959830 | Spea_R0007 | - | 16S ribosomal RNA |

183892 | 183968 | + | 77 | 157959830 | Spea_R0008 | - | 14 Ile tRNA
|

184034 | 184109 | + | 76 | 157959830 | Spea_R0009 | - | 02 Ala tRNA
|

184481 | 187375 | + | 2895 | 157959830 | Spea_R0010 | - | 23S ribosomal RNA |

187508 | 187623 | + | 116 | 157959830 | Spea_R0011 | - | 5S ribosomal RNA |

187724 | 187800 | + | 77 | 157959830 | Spea_R0012 | - | 06 Asp tRNA
|

191614 | 191689 | + | 76 | 157959830 | Spea_R0013 | - | 12 Thr tRNA
|

191698 | 191782 | + | 85 | 157959830 | Spea_R0014 | - | 18 Tyr tRNA
|

191818 | 191891 | + | 74 | 157959830 | Spea_R0015 | - | 01 Gly tRNA
|

235193 | 236727 | + | 1535 | 157959830 | Spea_R0016 | - | 16S ribosomal RNA |

237113 | 240007 | + | 2895 | 157959830 | Spea_R0017 | - | 23S ribosomal RNA |

240140 | 240255 | + | 116 | 157959830 | Spea_R0018 | - | 5S ribosomal RNA |

243642 | 245176 | + | 1535 | 157959830 | Spea_R0019 | - | 16S ribosomal RNA |

245526 | 248420 | + | 2895 | 157959830 | Spea_R0020 | - | 23S ribosomal RNA |

248554 | 248669 | + | 116 | 157959830 | Spea_R0021 | - | 5S ribosomal RNA |

248738 | 248813 | + | 76 | 157959830 | Spea_R0022 | - | 12 Thr tRNA
|

248831 | 248946 | + | 116 | 157959830 | Spea_R0023 | - | 5S ribosomal RNA |

283442 | 283739 | + | 298 | 157959830 | Spea_R0024 | - | misc_RNA |

416766 | 416842 | + | 77 | 157959830 | Spea_R0025 | - | 11 Arg tRNA
|

416882 | 416957 | + | 76 | 157959830 | Spea_R0026 | - | 09 His tRNA
|

416999 | 417075 | + | 77 | 157959830 | Spea_R0027 | - | 03 Pro tRNA
|

417134 | 417210 | + | 77 | 157959830 | Spea_R0028 | - | 03 Pro tRNA
|

493722 | 495256 | + | 1535 | 157959830 | Spea_R0029 | - | 16S ribosomal RNA |

495607 | 498501 | + | 2895 | 157959830 | Spea_R0030 | - | 23S ribosomal RNA |

498634 | 498749 | + | 116 | 157959830 | Spea_R0031 | - | 5S ribosomal RNA |

552634 | 552724 | - | 91 | 157959830 | Spea_R0032 | - | Sec tRNA |

641376 | 641466 | + | 91 | 157959830 | Spea_R0033 | - | 08 Ser tRNA
|

642639 | 642729 | + | 91 | 157959830 | Spea_R0034 | - | 08 Ser tRNA
|

645858 | 647392 | + | 1535 | 157959830 | Spea_R0035 | - | 16S ribosomal RNA |

647468 | 647544 | + | 77 | 157959830 | Spea_R0036 | - | 14 Ile tRNA
|

647610 | 647685 | + | 76 | 157959830 | Spea_R0037 | - | 02 Ala tRNA
|

648022 | 650916 | + | 2895 | 157959830 | Spea_R0038 | - | 23S ribosomal RNA |

651094 | 651209 | + | 116 | 157959830 | Spea_R0039 | - | 5S ribosomal RNA |

728115 | 728199 | + | 85 | 157959830 | Spea_R0040 | - | 15 Leu tRNA
|

1168942 | 1169018 | - | 77 | 157959830 | Spea_R0041 | - | 16 Met tRNA
|

1339706 | 1339781 | - | 76 | 157959830 | Spea_R0042 | - | 12 Thr tRNA
|

1339834 | 1339909 | - | 76 | 157959830 | Spea_R0043 | - | 17 Phe tRNA
|

1340449 | 1340524 | - | 76 | 157959830 | Spea_R0044 | - | 12 Thr tRNA
|

1340577 | 1340652 | - | 76 | 157959830 | Spea_R0045 | - | 17 Phe tRNA
|

1342467 | 1342542 | - | 76 | 157959830 | Spea_R0046 | - | 12 Thr tRNA
|

1342595 | 1342670 | - | 76 | 157959830 | Spea_R0047 | - | 17 Phe tRNA
|

1456724 | 1456815 | + | 92 | 157959830 | Spea_R0048 | - | 08 Ser tRNA
|

1456837 | 1456913 | + | 77 | 157959830 | Spea_R0049 | - | 11 Arg tRNA
|

1456944 | 1457020 | + | 77 | 157959830 | Spea_R0050 | - | 11 Arg tRNA
|

1457053 | 1457129 | + | 77 | 157959830 | Spea_R0051 | - | 11 Arg tRNA
|

1457160 | 1457236 | + | 77 | 157959830 | Spea_R0052 | - | 11 Arg tRNA
|

1457270 | 1457346 | + | 77 | 157959830 | Spea_R0053 | - | 11 Arg tRNA
|

1457356 | 1457447 | + | 92 | 157959830 | Spea_R0054 | - | 08 Ser tRNA
|

1457524 | 1457600 | + | 77 | 157959830 | Spea_R0055 | - | 11 Arg tRNA
|

1457636 | 1457712 | + | 77 | 157959830 | Spea_R0056 | - | 11 Arg tRNA
|

1457722 | 1457813 | + | 92 | 157959830 | Spea_R0057 | - | 08 Ser tRNA
|

1566140 | 1566494 | - | 355 | 157959830 | Spea_R0058 | - | tmRNA |

1627363 | 1627438 | - | 76 | 157959830 | Spea_R0059 | - | 11 Arg tRNA
|

1770483 | 1770558 | - | 76 | 157959830 | Spea_R0060 | - | 13 Val tRNA
|

1770596 | 1770671 | - | 76 | 157959830 | Spea_R0061 | - | 13 Val tRNA
|

1770709 | 1770784 | - | 76 | 157959830 | Spea_R0062 | - | 13 Val tRNA
|

1770822 | 1770897 | - | 76 | 157959830 | Spea_R0063 | - | 13 Val tRNA
|

1770935 | 1771010 | - | 76 | 157959830 | Spea_R0064 | - | 13 Val tRNA
|

1771048 | 1771123 | - | 76 | 157959830 | Spea_R0065 | - | 13 Val tRNA
|

1771161 | 1771236 | - | 76 | 157959830 | Spea_R0066 | - | 13 Val tRNA
|

1771274 | 1771349 | - | 76 | 157959830 | Spea_R0067 | - | 13 Val tRNA
|

1771387 | 1771462 | - | 76 | 157959830 | Spea_R0068 | - | 13 Val tRNA
|

1771500 | 1771575 | - | 76 | 157959830 | Spea_R0069 | - | 13 Val tRNA
|

1771615 | 1771690 | - | 76 | 157959830 | Spea_R0070 | - | 13 Val tRNA
|

1773910 | 1773985 | + | 76 | 157959830 | Spea_R0071 | - | 02 Ala tRNA
|

1774066 | 1774141 | + | 76 | 157959830 | Spea_R0072 | - | 04 Glu tRNA
|

1774244 | 1774319 | + | 76 | 157959830 | Spea_R0073 | - | 04 Glu tRNA
|

1774422 | 1774497 | + | 76 | 157959830 | Spea_R0074 | - | 04 Glu tRNA
|

1774600 | 1774675 | + | 76 | 157959830 | Spea_R0075 | - | 04 Glu tRNA
|

1774778 | 1774853 | + | 76 | 157959830 | Spea_R0076 | - | 04 Glu tRNA
|

1774956 | 1775031 | + | 76 | 157959830 | Spea_R0077 | - | 04 Glu tRNA
|

1775134 | 1775209 | + | 76 | 157959830 | Spea_R0078 | - | 04 Glu tRNA
|

1775312 | 1775387 | + | 76 | 157959830 | Spea_R0079 | - | 04 Glu tRNA
|

1775641 | 1775716 | + | 76 | 157959830 | Spea_R0080 | - | 04 Glu tRNA
|

1775819 | 1775894 | + | 76 | 157959830 | Spea_R0081 | - | 04 Glu tRNA
|

1775997 | 1776072 | + | 76 | 157959830 | Spea_R0082 | - | 04 Glu tRNA
|

1776175 | 1776250 | + | 76 | 157959830 | Spea_R0083 | - | 04 Glu tRNA
|

1776353 | 1776428 | + | 76 | 157959830 | Spea_R0084 | - | 04 Glu tRNA
|

1776476 | 1776551 | + | 76 | 157959830 | Spea_R0085 | - | 02 Ala tRNA
|

2081308 | 2082842 | + | 1535 | 157959830 | Spea_R0086 | - | 16S ribosomal RNA |

2083192 | 2086086 | + | 2895 | 157959830 | Spea_R0087 | - | 23S ribosomal RNA |

2086219 | 2086334 | + | 116 | 157959830 | Spea_R0088 | - | 5S ribosomal RNA |

2143274 | 2143350 | - | 77 | 157959830 | Spea_R0089 | - | 03 Pro tRNA
|

2366164 | 2366240 | - | 77 | 157959830 | Spea_R0090 | - | 16 Met tRNA
|

2366281 | 2366357 | - | 77 | 157959830 | Spea_R0091 | - | 16 Met tRNA
|

2366398 | 2366474 | - | 77 | 157959830 | Spea_R0092 | - | 16 Met tRNA
|

2366515 | 2366591 | - | 77 | 157959830 | Spea_R0093 | - | 16 Met tRNA
|

2376218 | 2376308 | + | 91 | 157959830 | Spea_R0094 | - | 08 Ser tRNA
|

2379767 | 2379842 | + | 76 | 157959830 | Spea_R0095 | - | 01 Gly tRNA
|

2379856 | 2379929 | + | 74 | 157959830 | Spea_R0096 | - | 19 Cys tRNA
|

2380015 | 2380100 | + | 86 | 157959830 | Spea_R0097 | - | 15 Leu tRNA
|

2550857 | 2550932 | + | 76 | 157959830 | Spea_R0098 | - | 01 Gly tRNA
|

2550946 | 2551019 | + | 74 | 157959830 | Spea_R0099 | - | 19 Cys tRNA
|

2551115 | 2551200 | + | 86 | 157959830 | Spea_R0100 | - | 15 Leu tRNA
|

2551835 | 2551908 | + | 74 | 157959830 | Spea_R0101 | - | 19 Cys tRNA
|

2552004 | 2552089 | + | 86 | 157959830 | Spea_R0102 | - | 15 Leu tRNA
|

2552569 | 2552642 | + | 74 | 157959830 | Spea_R0103 | - | 19 Cys tRNA
|

2552775 | 2552860 | + | 86 | 157959830 | Spea_R0104 | - | 15 Leu tRNA
|

2558019 | 2558109 | + | 91 | 157959830 | Spea_R0105 | - | 08 Ser tRNA
|

2717566 | 2717655 | - | 90 | 157959830 | Spea_R0106 | - | 08 Ser tRNA
|

2759730 | 2759806 | - | 77 | 157959830 | Spea_R0107 | - | 16 Met tRNA
|

2759996 | 2760072 | - | 77 | 157959830 | Spea_R0108 | - | 16 Met tRNA
|

2760118 | 2760194 | - | 77 | 157959830 | Spea_R0109 | - | 13 Val tRNA
|

2760197 | 2760273 | - | 77 | 157959830 | Spea_R0110 | - | 16 Met tRNA
|

2760309 | 2760385 | - | 77 | 157959830 | Spea_R0111 | - | 13 Val tRNA
|

2760399 | 2760475 | - | 77 | 157959830 | Spea_R0112 | - | 16 Met tRNA
|

2858823 | 2858907 | + | 85 | 157959830 | Spea_R0113 | - | 18 Tyr tRNA
|

2858938 | 2859022 | + | 85 | 157959830 | Spea_R0114 | - | 18 Tyr tRNA
|

2859108 | 2859192 | + | 85 | 157959830 | Spea_R0115 | - | 18 Tyr tRNA
|

2859300 | 2859384 | + | 85 | 157959830 | Spea_R0116 | - | 18 Tyr tRNA
|

2859492 | 2859576 | + | 85 | 157959830 | Spea_R0117 | - | 18 Tyr tRNA
|

2866268 | 2866343 | + | 76 | 157959830 | Spea_R0118 | - | 07 Asn tRNA
|

2866389 | 2866464 | + | 76 | 157959830 | Spea_R0119 | - | 07 Asn tRNA
|

2866506 | 2866581 | + | 76 | 157959830 | Spea_R0120 | - | 07 Asn tRNA
|

2866608 | 2866683 | + | 76 | 157959830 | Spea_R0121 | - | 07 Asn tRNA
|

2866716 | 2866791 | + | 76 | 157959830 | Spea_R0122 | - | 07 Asn tRNA
|

2866825 | 2866900 | + | 76 | 157959830 | Spea_R0123 | - | 07 Asn tRNA
|

2866941 | 2867016 | + | 76 | 157959830 | Spea_R0124 | - | 07 Asn tRNA
|

2929429 | 2929505 | - | 77 | 157959830 | Spea_R0125 | - | 06 Asp tRNA
|

2929603 | 2929679 | - | 77 | 157959830 | Spea_R0126 | - | 06 Asp tRNA
|

2929777 | 2929853 | - | 77 | 157959830 | Spea_R0127 | - | 06 Asp tRNA
|

2929937 | 2930013 | - | 77 | 157959830 | Spea_R0128 | - | 06 Asp tRNA
|

3120289 | 3120364 | - | 76 | 157959830 | Spea_R0129 | - | 10 Lys tRNA
|

3120423 | 3120498 | - | 76 | 157959830 | Spea_R0130 | - | 10 Lys tRNA
|

3120557 | 3120632 | - | 76 | 157959830 | Spea_R0131 | - | 10 Lys tRNA
|

3120691 | 3120766 | - | 76 | 157959830 | Spea_R0132 | - | 10 Lys tRNA
|

3120826 | 3120901 | - | 76 | 157959830 | Spea_R0133 | - | 10 Lys tRNA
|

3120959 | 3121034 | - | 76 | 157959830 | Spea_R0134 | - | 10 Lys tRNA
|

3121093 | 3121168 | - | 76 | 157959830 | Spea_R0135 | - | 10 Lys tRNA
|

3121227 | 3121302 | - | 76 | 157959830 | Spea_R0136 | - | 10 Lys tRNA
|

3121362 | 3121437 | - | 76 | 157959830 | Spea_R0137 | - | 10 Lys tRNA
|

3121496 | 3121571 | - | 76 | 157959830 | Spea_R0138 | - | 10 Lys tRNA
|

3121631 | 3121706 | - | 76 | 157959830 | Spea_R0139 | - | 10 Lys tRNA
|

3121766 | 3121841 | - | 76 | 157959830 | Spea_R0140 | - | 10 Lys tRNA
|

3244371 | 3244485 | - | 115 | 157959830 | Spea_R0141 | - | misc_RNA |

3269860 | 3269935 | - | 76 | 157959830 | Spea_R0142 | - | 09 His tRNA
|

3269944 | 3270020 | - | 77 | 157959830 | Spea_R0143 | - | 11 Arg tRNA
|

3270084 | 3270160 | - | 77 | 157959830 | Spea_R0144 | - | 03 Pro tRNA
|

3757983 | 3758059 | - | 77 | 157959830 | Spea_R0145 | - | 16 Met tRNA
|

3758163 | 3758249 | - | 87 | 157959830 | Spea_R0146 | - | 15 Leu tRNA
|

3835257 | 3835331 | - | 75 | 157959830 | Spea_R0147 | - | 05 Gln tRNA
|

3835383 | 3835467 | - | 85 | 157959830 | Spea_R0148 | - | 15 Leu tRNA
|

3835599 | 3835673 | - | 75 | 157959830 | Spea_R0149 | - | 05 Gln tRNA
|

3835694 | 3835778 | - | 85 | 157959830 | Spea_R0150 | - | 15 Leu tRNA
|

3835875 | 3835949 | - | 75 | 157959830 | Spea_R0151 | - | 05 Gln tRNA
|

3835999 | 3836083 | - | 85 | 157959830 | Spea_R0152 | - | 15 Leu tRNA
|

3836295 | 3836371 | - | 77 | 157959830 | Spea_R0153 | - | 16 Met tRNA
|

3836377 | 3836451 | - | 75 | 157959830 | Spea_R0154 | - | 05 Gln tRNA
|

3836499 | 3836583 | - | 85 | 157959830 | Spea_R0155 | - | 15 Leu tRNA
|

3836639 | 3836715 | - | 77 | 157959830 | Spea_R0156 | - | 16 Met tRNA
|

3836721 | 3836795 | - | 75 | 157959830 | Spea_R0157 | - | 05 Gln tRNA
|

3836843 | 3836927 | - | 85 | 157959830 | Spea_R0158 | - | 15 Leu tRNA
|

3836983 | 3837059 | - | 77 | 157959830 | Spea_R0159 | - | 16 Met tRNA
|

3862885 | 3862961 | - | 77 | 157959830 | Spea_R0160 | - | 20 Trp tRNA
|

3863129 | 3863205 | - | 77 | 157959830 | Spea_R0161 | - | 20 Trp tRNA
|

3867049 | 3867164 | - | 116 | 157959830 | Spea_R0162 | - | 5S ribosomal RNA |

3867297 | 3870191 | - | 2895 | 157959830 | Spea_R0163 | - | 23S ribosomal RNA |

3870541 | 3872075 | - | 1535 | 157959830 | Spea_R0164 | - | 16S ribosomal RNA |

3882154 | 3882229 | + | 76 | 157959830 | Spea_R0165 | - | 17 Phe tRNA
|

4331488 | 4331563 | - | 76 | 157959830 | Spea_R0166 | - | 01 Gly tRNA
|

4331694 | 4331769 | - | 76 | 157959830 | Spea_R0167 | - | 01 Gly tRNA
|

4331817 | 4331892 | - | 76 | 157959830 | Spea_R0168 | - | 01 Gly tRNA
|

4332055 | 4332130 | - | 76 | 157959830 | Spea_R0169 | - | 01 Gly tRNA
|

4332147 | 4332222 | - | 76 | 157959830 | Spea_R0170 | - | 01 Gly tRNA
|

4332271 | 4332346 | - | 76 | 157959830 | Spea_R0171 | - | 01 Gly tRNA
|

4616881 | 4616996 | - | 116 | 157959830 | Spea_R0172 | - | 5S ribosomal RNA |

4617129 | 4620023 | - | 2895 | 157959830 | Spea_R0173 | - | 23S ribosomal RNA |

4620395 | 4620470 | - | 76 | 157959830 | Spea_R0174 | - | 02 Ala tRNA
|

4620536 | 4620612 | - | 77 | 157959830 | Spea_R0175 | - | 14 Ile tRNA
|

4620688 | 4622222 | - | 1535 | 157959830 | Spea_R0176 | - | 16S ribosomal RNA |

5129770 | 5129846 | - | 77 | 157959830 | Spea_R0177 | - | 06 Asp tRNA
|

5129947 | 5130062 | - | 116 | 157959830 | Spea_R0178 | - | 5S ribosomal RNA |

5130196 | 5133090 | - | 2895 | 157959830 | Spea_R0179 | - | 23S ribosomal RNA |

5133441 | 5134975 | - | 1535 | 157959830 | Spea_R0180 | - | 16S ribosomal RNA |