Материалы:NC 008254

LOCUS NC_008254 4412446 bp DNA circular BCT 25-JUL-2006 DEFINITION Mesorhizobium sp. BNC1, complete genome. ACCESSION NC_008254 VERSION NC_008254.1 GI:110632362 KEYWORDS . SOURCE Mesorhizobium sp. BNC1 ORGANISM Mesorhizobium sp. BNC1 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium. REFERENCE 1 (bases 1 to 4412446) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Mesorhizobium sp. BNC1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4412446) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4412446) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N.L. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (20-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000390. URL -- http://www.jgi.doe.gov JGI Project ID: 2662197 Source DNA and bacteria available from Harvey Bolton JR. (harvey.bolton@pnl.gov) Contacts: Harvey Bolton JR. (harvey.bolton@pnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Other accessions for this project are: CP000389 (Plasmid1), CP000391 (Plasmid2), CP000392 (Plasmid3). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

78675 | 78750 | - | 76 | 110632362 | Meso_R0001 | - | 12 Thr tRNA
|

115580 | 115655 | - | 76 | 110632362 | Meso_R0002 | - | 17 Phe tRNA
|

126698 | 126772 | - | 75 | 110632362 | Meso_R0003 | - | 01 Gly tRNA
|

215234 | 215310 | + | 77 | 110632362 | Meso_R0004 | - | 09 His tRNA
|

282215 | 282289 | + | 75 | 110632362 | Meso_R0005 | - | 12 Thr tRNA
|

392373 | 392449 | - | 77 | 110632362 | Meso_R0006 | - | 11 Arg tRNA
|

521127 | 521200 | + | 74 | 110632362 | Meso_R0007 | - | 05 Gln tRNA
|

857350 | 857424 | + | 75 | 110632362 | Meso_R0008 | - | 05 Gln tRNA
|

943686 | 943762 | - | 77 | 110632362 | Meso_R0009 | - | 03 Pro tRNA
|

978231 | 978304 | - | 74 | 110632362 | Meso_R0010 | - | Xaa tRNA |

1034960 | 1035050 | - | 91 | 110632362 | Meso_R0011 | - | 08 Ser tRNA
|

1118778 | 1118879 | - | 102 | 110632362 | Meso_R0012 | - | |

1118882 | 1118967 | - | 86 | 110632362 | Meso_R0013 | - | |

1148801 | 1148885 | + | 85 | 110632362 | Meso_R0014 | - | 15 Leu tRNA
|

1190473 | 1190557 | + | 85 | 110632362 | Meso_R0015 | - | 18 Tyr tRNA
|

1192249 | 1192322 | + | 74 | 110632362 | Meso_R0016 | - | 01 Gly tRNA
|

1206280 | 1206356 | + | 77 | 110632362 | Meso_R0017 | - | 03 Pro tRNA
|

1206735 | 1206811 | + | 77 | 110632362 | Meso_R0018 | - | 11 Arg tRNA
|

1260786 | 1260862 | + | 77 | 110632362 | Meso_R0019 | - | 03 Pro tRNA
|

1289535 | 1289606 | - | 72 | 110632362 | Meso_R0020 | - | Xaa tRNA |

1344915 | 1344991 | - | 77 | 110632362 | Meso_R0021 | - | 06 Asp tRNA
|

1345179 | 1345254 | + | 76 | 110632362 | Meso_R0022 | - | 13 Val tRNA
|

1434493 | 1434578 | + | 86 | 110632362 | Meso_R0023 | - | 15 Leu tRNA
|

1555124 | 1555198 | - | 75 | 110632362 | Meso_R0024 | - | 13 Val tRNA
|

1611506 | 1611581 | - | 76 | 110632362 | Meso_R0025 | - | 10 Lys tRNA
|

1666234 | 1666309 | - | 76 | 110632362 | Meso_R0026 | - | 12 Thr tRNA
|

1695913 | 1696002 | - | 90 | 110632362 | Meso_R0027 | - | 08 Ser tRNA
|

1871878 | 1872209 | + | 332 | 110632362 | Meso_R0028 | - | tmRNA |

1894028 | 1894103 | + | 76 | 110632362 | Meso_R0029 | - | 10 Lys tRNA
|

1916151 | 1916235 | - | 85 | 110632362 | Meso_R0030 | - | 15 Leu tRNA
|

1960296 | 1960371 | - | 76 | 110632362 | Meso_R0031 | - | 20 Trp tRNA
|

2017928 | 2018001 | - | 74 | 110632362 | Meso_R0032 | - | 19 Cys tRNA
|

2038749 | 2038823 | - | 75 | 110632362 | Meso_R0033 | - | 07 Asn tRNA
|

2063045 | 2063120 | + | 76 | 110632362 | Meso_R0034 | - | 04 Glu tRNA
|

2165614 | 2165991 | - | 378 | 110632362 | Meso_R0035 | - | RNaseP RNA |

2215550 | 2215753 | + | 204 | 110632362 | Meso_R0036 | - | |

2226784 | 2226859 | + | 76 | 110632362 | Meso_R0037 | - | 16 Met tRNA
|

2367051 | 2367127 | + | 77 | 110632362 | Meso_R0038 | - | 16 Met tRNA
|

2734071 | 2734147 | - | 77 | 110632362 | Meso_R0039 | - | 16 Met tRNA
|

2734276 | 2734390 | - | 115 | 110632362 | Meso_R0040 | - | 5S ribosomal RNA |

2734616 | 2737490 | - | 2875 | 110632362 | Meso_R0041 | - | 23S ribosomal RNA |

2737809 | 2737884 | - | 76 | 110632362 | Meso_R0042 | - | 02 Ala tRNA
|

2737973 | 2738049 | - | 77 | 110632362 | Meso_R0043 | - | 14 Ile tRNA
|

2738351 | 2739809 | - | 1459 | 110632362 | Meso_R0044 | - | 16S ribosomal RNA |

2750090 | 2750207 | + | 118 | 110632362 | Meso_R0045 | - | |

2937284 | 2937539 | - | 256 | 110632362 | Meso_R0046 | - | |

2941844 | 2942047 | - | 204 | 110632362 | Meso_R0047 | - | |

2997010 | 2997084 | + | 75 | 110632362 | Meso_R0048 | - | 13 Val tRNA
|

3251583 | 3251659 | - | 77 | 110632362 | Meso_R0049 | - | 16 Met tRNA
|

3251788 | 3251902 | - | 115 | 110632362 | Meso_R0050 | - | 23S ribosomal RNA |

3252128 | 3255002 | - | 2875 | 110632362 | Meso_R0051 | - | 23S ribosomal RNA |

3255321 | 3255396 | - | 76 | 110632362 | Meso_R0052 | - | 02 Ala tRNA
|

3255485 | 3255561 | - | 77 | 110632362 | Meso_R0053 | - | 14 Ile tRNA
|

3255863 | 3257321 | - | 1459 | 110632362 | Meso_R0054 | - | 16S ribosomal RNA |

3297018 | 3297102 | - | 85 | 110632362 | Meso_R0055 | - | 15 Leu tRNA
|

3330912 | 3330988 | - | 77 | 110632362 | Meso_R0056 | - | 11 Arg tRNA
|

3414950 | 3415025 | - | 76 | 110632362 | Meso_R0057 | - | 04 Glu tRNA
|

3522172 | 3522274 | + | 103 | 110632362 | Meso_R0058 | - | |

3538363 | 3538437 | + | 75 | 110632362 | Meso_R0059 | - | 01 Gly tRNA
|

3645605 | 3645680 | - | 76 | 110632362 | Meso_R0060 | - | 02 Ala tRNA
|

3739038 | 3739127 | + | 90 | 110632362 | Meso_R0061 | - | 08 Ser tRNA
|

3801882 | 3802094 | + | 213 | 110632362 | Meso_R0062 | - | |

3894684 | 3894759 | + | 76 | 110632362 | Meso_R0063 | - | 02 Ala tRNA
|

4214708 | 4214784 | - | 77 | 110632362 | Meso_R0064 | - | 11 Arg tRNA
|

4215011 | 4215075 | - | 65 | 110632362 | Meso_R0065 | - | 11 Arg tRNA
|

4263184 | 4263268 | + | 85 | 110632362 | Meso_R0066 | - | 15 Leu tRNA
|

4285444 | 4285533 | - | 90 | 110632362 | Meso_R0067 | - | 08 Ser tRNA
|

4368582 | 4368685 | + | 104 | 110632362 | Meso_R0068 | - | SRP RNA |