Материалы:NC 009445

LOCUS NC_009445 7456587 bp DNA circular BCT 14-AUG-2007 DEFINITION Bradyrhizobium sp. ORS278, complete genome. ACCESSION NC_009445 VERSION NC_009445.1 GI:146337175 KEYWORDS complete genome; PRO. SOURCE Bradyrhizobium sp. ORS278 ORGANISM Bradyrhizobium sp. ORS278 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium. REFERENCE 1 (bases 1 to 7456587) AUTHORS Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytrin,E., Avarre,J.C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G., Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A., Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C., Franck,W.L., Chang,W.S., Saunders,E., Bruce,D., Richardson,P., Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D., Vermeglio,A., Medigue,C. and Sadowsky,M. TITLE The Rhizobial Nod Factors are not Universally Required for Legume Nodulation JOURNAL Unpublished REFERENCE 2 (bases 1 to 7456587) AUTHORS Jaubert,M., Lavergne,J., Fardoux,J., Hannibal,L., Vuillet,L., Adriano,J.M., Bouyer,P., Pignol,D., Giraud,E. and Vermeglio,A. TITLE A singular bacteriophytochrome acquired by lateral gene transfer JOURNAL Unpublished REFERENCE 3 (bases 1 to 7456587) AUTHORS Genoscope. CONSRTM 1:Genoscope, UMR 8030, France 2:LSTM, France 3:Dep SWC ; and BioTechnology Institute, USA 4:CEA/Cadarache,DEVM,UMR 6191, France 5:NCSB , USA 6:DOE , USA 7:DOE , USA 8:Universite Lyon1, France; UMR5557, France; IFR 41, France. TITLE Direct Submission JOURNAL Submitted (21-NOV-2006) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) REFERENCE 4 (bases 1 to 7456587) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-NOV-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CU234118. Annotation data relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in FrankiaScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage/frankia. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS 7 : Gene remnant. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

116406 | 116481 | + | 76 | 146337175 | BRADOtRNA1 | - | 02 Ala tRNA
|

143183 | 143269 | - | 87 | 146337175 | BRADOtRNA50 | - | 15 Leu tRNA
|

292712 | 292787 | + | 76 | 146337175 | BRADOtRNA2 | - | 02 Ala tRNA
|

311530 | 311605 | - | 76 | 146337175 | BRADOtRNA49 | - | 12 Thr tRNA
|

332058 | 332132 | + | 75 | 146337175 | BRADOtRNA3 | - | 01 Gly tRNA
|

449051 | 449140 | + | 90 | 146337175 | BRADOtRNA4 | - | 08 Ser tRNA
|

495267 | 495343 | - | 77 | 146337175 | BRADOtRNA48 | - | 11 Arg tRNA
|

689746 | 689822 | + | 77 | 146337175 | BRADOtRNA5 | - | 11 Arg tRNA
|

808247 | 808344 | + | 98 | 146337175 | BRADOmisc_RNA_1 | - | SRP_bact |

831114 | 831190 | + | 77 | 146337175 | BRADOtRNA6 | - | 11 Arg tRNA
|

898436 | 898509 | + | 74 | 146337175 | BRADOmisc_RNA_7 | - | Intron_gpII |

1315633 | 1315709 | + | 77 | 146337175 | BRADOtRNA7 | - | 09 His tRNA
|

1418511 | 1418587 | - | 77 | 146337175 | BRADOtRNA47 | - | Xaa tRNA |

1459003 | 1459077 | + | 75 | 146337175 | BRADOtRNA8 | - | 04 Glu tRNA
|

1575020 | 1575094 | - | 75 | 146337175 | BRADOtRNA46 | - | 13 Val tRNA
|

1991182 | 1991255 | + | 74 | 146337175 | BRADOmisc_RNA_8 | - | Intron_gpII |

2193505 | 2193581 | + | 77 | 146337175 | BRADOtRNA9 | - | 03 Pro tRNA
|

2313556 | 2313630 | + | 75 | 146337175 | BRADOtRNA10 | - | 05 Gln tRNA
|

3139393 | 3139479 | - | 87 | 146337175 | BRADOtRNA45 | - | 15 Leu tRNA
|

3203705 | 3203779 | - | 75 | 146337175 | BRADOtRNA44 | - | 12 Thr tRNA
|

3206841 | 3206926 | + | 86 | 146337175 | BRADOtRNA11 | - | 18 Tyr tRNA
|

3211570 | 3211643 | + | 74 | 146337175 | BRADOtRNA12 | - | 01 Gly tRNA
|

3244585 | 3244660 | + | 76 | 146337175 | BRADOtRNA13 | - | 20 Trp tRNA
|

3421313 | 3421389 | - | 77 | 146337175 | BRADOtRNA43 | - | 11 Arg tRNA
|

3464225 | 3464309 | + | 85 | 146337175 | BRADOtRNA14 | - | 15 Leu tRNA
|

3789846 | 3789920 | + | 75 | 146337175 | BRADOtRNA15 | - | 04 Glu tRNA
|

3841026 | 3841102 | + | 77 | 146337175 | BRADOtRNA16 | - | 03 Pro tRNA
|

3878669 | 3878743 | - | 75 | 146337175 | BRADOtRNA42 | - | 08 Ser tRNA
|

3918329 | 3918404 | - | 76 | 146337175 | BRADOtRNA41 | - | 10 Lys tRNA
|

3989099 | 3989188 | - | 90 | 146337175 | BRADOtRNA40 | - | 08 Ser tRNA
|

4061385 | 4061459 | + | 75 | 146337175 | BRADOtRNA17 | - | 07 Asn tRNA
|

4072398 | 4072471 | - | 74 | 146337175 | BRADOtRNA39 | - | 19 Cys tRNA
|

4107680 | 4107756 | + | 77 | 146337175 | BRADOtRNA18 | - | 11 Arg tRNA
|

4388856 | 4388932 | - | 77 | 146337175 | BRADOtRNA38 | - | 06 Asp tRNA
|

4394377 | 4394453 | - | 77 | 146337175 | BRADOtRNA37 | - | 13 Val tRNA
|

4401555 | 4401639 | - | 85 | 146337175 | BRADOtRNA36 | - | 15 Leu tRNA
|

4618540 | 4618617 | - | 78 | 146337175 | BRADOtRNA35 | - | 03 Pro tRNA
|

4682839 | 4682932 | - | 94 | 146337175 | BRADOtRNA34 | - | 08 Ser tRNA
|

4849563 | 4849636 | + | 74 | 146337175 | BRADOtRNA19 | - | 05 Gln tRNA
|

5049703 | 5049825 | - | 123 | 146337175 | BRADO_5S_2 | - | ribosomal RNA 5S |

5049923 | 5052563 | - | 2641 | 146337175 | BRADO_23S_2 | - | ribosomal RNA 23S |

5053288 | 5053363 | - | 76 | 146337175 | BRADOtRNA33 | - | 02 Ala tRNA
|

5053511 | 5053587 | - | 77 | 146337175 | BRADOtRNA32 | - | 14 Ile tRNA
|

5053832 | 5055324 | - | 1493 | 146337175 | BRADO_16S_2 | - | ribosomal RNA 16S |

5111599 | 5111792 | - | 194 | 146337175 | BRADOmisc_RNA_2 | - | Cobalamin |

5178592 | 5178698 | + | 107 | 146337175 | BRADOmisc_RNA_3 | - | gcvT |

5178702 | 5178792 | + | 91 | 146337175 | BRADOmisc_RNA_4 | - | gcvT |

5708280 | 5708355 | - | 76 | 146337175 | BRADOtRNA31 | - | 10 Lys tRNA
|

5866943 | 5867305 | + | 363 | 146337175 | BRADOmisc_RNA_6 | - | RNaseP_bact_a |

5912070 | 5912166 | + | 97 | 146337175 | BRADOmisc_RNA_10 | - | THI |

6059839 | 6059914 | + | 76 | 146337175 | BRADOtRNA20 | - | 16 Met tRNA
|

6111805 | 6111881 | - | 77 | 146337175 | BRADOtRNA30 | - | 16 Met tRNA
|

6258242 | 6258436 | - | 195 | 146337175 | BRADOmisc_RNA_9 | - | RFN |

6448675 | 6448749 | - | 75 | 146337175 | BRADOtRNA29 | - | 13 Val tRNA
|

6671825 | 6671901 | - | 77 | 146337175 | BRADOtRNA28 | - | 16 Met tRNA
|

6690866 | 6690988 | - | 123 | 146337175 | BRADO_5S_1 | - | ribosomal RNA 5S |

6691081 | 6693721 | - | 2641 | 146337175 | BRADO_23S_1 | - | ribosomal RNA 23S |

6694446 | 6694521 | - | 76 | 146337175 | BRADOtRNA27 | - | 02 Ala tRNA
|

6694669 | 6694745 | - | 77 | 146337175 | BRADOtRNA26 | - | 14 Ile tRNA
|

6694990 | 6696482 | - | 1493 | 146337175 | BRADO_16S_1 | - | ribosomal RNA 16S |

6797711 | 6797795 | + | 85 | 146337175 | BRADOtRNA21 | - | 15 Leu tRNA
|

6887044 | 6887119 | - | 76 | 146337175 | BRADOtRNA25 | - | 17 Phe tRNA
|

6894920 | 6894994 | + | 75 | 146337175 | BRADOtRNA22 | - | 12 Thr tRNA
|

7022035 | 7022108 | - | 74 | 146337175 | BRADOtRNA24 | - | 01 Gly tRNA
|

7058665 | 7058767 | - | 103 | 146337175 | BRADOmisc_RNA_5 | - | ykkC-yxkD |

7235113 | 7235202 | - | 90 | 146337175 | BRADOtRNA23 | - | 08 Ser tRNA
|