Материалы:NC 009664

LOCUS NC_009664 4761183 bp DNA linear BCT 25-JUL-2007 DEFINITION Kineococcus radiotolerans SRS30216, complete genome. ACCESSION NC_009664 VERSION NC_009664.1 GI:152963972 KEYWORDS . SOURCE Kineococcus radiotolerans SRS30216 ORGANISM Kineococcus radiotolerans SRS30216 Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Frankineae; Kineosporiaceae; Kineococcus. REFERENCE 1 (bases 1 to 4761183) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Bagwell,C.E., Shimkets,L., Berry,C.J., Fliermans,C. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Kineococcus radiotolerans SRS30216 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4761183) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-JUL-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4761183) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Bagwell,C.E., Shimkets,L., Berry,C.J., Fliermans,C. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (04-JUL-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000750. URL -- http://www.jgi.doe.gov JGI Project ID: 3436090 Source DNA and bacteria available from Christopher E. Bagwell (christopher.bagwell@srnl.doe.gov) Contacts: Christopher E. Bagwell (christopher.bagwell@srnl.doe.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: Kineococcus radiotolerans SRS30216 has 3 replicons, a chromosome and two plasmids. The chromosome and the largest plasmid, plasmid 1, both appear to be linear. We have performed various pcr reactions in an attempt to circularize them. None have succeeded. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

12075 | 12151 | + | 77 | 152963972 | Krad_R0001 | - | 14 Ile tRNA
|

24936 | 25011 | + | 76 | 152963972 | Krad_R0002 | - | 02 Ala tRNA
|

79441 | 79524 | + | 84 | 152963972 | Krad_R0003 | - | 15 Leu tRNA
|

334879 | 334974 | + | 96 | 152963972 | Krad_R0004 | - | 08 Ser tRNA
|

455758 | 455834 | + | 77 | 152963972 | Krad_R0005 | - | 03 Pro tRNA
|

493327 | 493419 | - | 93 | 152963972 | Krad_R0006 | - | SRP RNA; RNA component of signal recognition particle |

493531 | 493618 | + | 88 | 152963972 | Krad_R0007 | - | 08 Ser tRNA
|

494774 | 494863 | - | 90 | 152963972 | Krad_R0008 | - | 08 Ser tRNA
|

499324 | 499396 | - | 73 | 152963972 | Krad_R0009 | - | 11 Arg tRNA
|

499570 | 499663 | - | 94 | 152963972 | Krad_R0010 | - | 08 Ser tRNA
|

537762 | 537838 | + | 77 | 152963972 | Krad_R0011 | - | 12 Thr tRNA
|

704531 | 704612 | + | 82 | 152963972 | Krad_R0012 | - | 18 Tyr tRNA
|

704706 | 704777 | + | 72 | 152963972 | Krad_R0013 | - | 12 Thr tRNA
|

704807 | 704879 | + | 73 | 152963972 | Krad_R0014 | - | 16 Met tRNA
|

713973 | 714048 | + | 76 | 152963972 | Krad_R0015 | - | 20 Trp tRNA
|

873295 | 873370 | + | 76 | 152963972 | Krad_R0016 | - | 10 Lys tRNA
|

985221 | 985296 | + | 76 | 152963972 | Krad_R0017 | - | 12 Thr tRNA
|

1101585 | 1101656 | + | 72 | 152963972 | Krad_R0018 | - | 05 Gln tRNA
|

1135911 | 1135994 | + | 84 | 152963972 | Krad_R0019 | - | 15 Leu tRNA
|

1264019 | 1264095 | + | 77 | 152963972 | Krad_R0020 | - | 16 Met tRNA
|

1264230 | 1264306 | + | 77 | 152963972 | Krad_R0021 | - | 16 Met tRNA
|

1326369 | 1326443 | - | 75 | 152963972 | Krad_R0022 | - | 11 Arg tRNA
|

1450054 | 1450125 | + | 72 | 152963972 | Krad_R0023 | - | 05 Gln tRNA
|

1450214 | 1450286 | + | 73 | 152963972 | Krad_R0024 | - | 04 Glu tRNA
|

1450332 | 1450404 | + | 73 | 152963972 | Krad_R0025 | - | 04 Glu tRNA
|

1718229 | 1718324 | + | 96 | 152963972 | Krad_R0026 | - | Sec tRNA |

1807886 | 1807970 | + | 85 | 152963972 | Krad_R0027 | - | 15 Leu tRNA
|

3035499 | 3035572 | + | 74 | 152963972 | Krad_R0028 | - | 15 Leu tRNA
|

3146173 | 3146247 | - | 75 | 152963972 | Krad_R0029 | - | 13 Val tRNA
|

3147788 | 3147860 | + | 73 | 152963972 | Krad_R0030 | - | 01 Gly tRNA
|

3147895 | 3147968 | + | 74 | 152963972 | Krad_R0031 | - | 19 Cys tRNA
|

3148003 | 3148077 | + | 75 | 152963972 | Krad_R0032 | - | 13 Val tRNA
|

3193009 | 3193085 | - | 77 | 152963972 | Krad_R0033 | - | 03 Pro tRNA
|

3235427 | 3235542 | - | 116 | 152963972 | Krad_R0034 | - | 5S ribosomal RNA |

3235747 | 3238893 | - | 3147 | 152963972 | Krad_R0035 | - | 23S ribosomal RNA |

3239500 | 3241011 | - | 1512 | 152963972 | Krad_R0036 | - | 16S ribosomal RNA |

3426178 | 3426493 | - | 316 | 152963972 | Krad_R0037 | - | RNA component of RNaseP |

3436766 | 3436841 | + | 76 | 152963972 | Krad_R0038 | - | 13 Val tRNA
|

3456585 | 3456661 | - | 77 | 152963972 | Krad_R0039 | - | 16 Met tRNA
|

3458764 | 3458836 | - | 73 | 152963972 | Krad_R0040 | - | 07 Asn tRNA
|

3559912 | 3559987 | - | 76 | 152963972 | Krad_R0041 | - | 02 Ala tRNA
|

3648191 | 3648264 | - | 74 | 152963972 | Krad_R0042 | - | 03 Pro tRNA
|

3648368 | 3648441 | + | 74 | 152963972 | Krad_R0043 | - | 01 Gly tRNA
|

3683908 | 3683980 | + | 73 | 152963972 | Krad_R0044 | - | 11 Arg tRNA
|

3837067 | 3837142 | - | 76 | 152963972 | Krad_R0045 | - | 02 Ala tRNA
|

3860501 | 3860573 | + | 73 | 152963972 | Krad_R0046 | - | 11 Arg tRNA
|

3877860 | 3877935 | + | 76 | 152963972 | Krad_R0047 | - | 09 His tRNA
|

3879349 | 3879424 | + | 76 | 152963972 | Krad_R0048 | - | 10 Lys tRNA
|

3918235 | 3918316 | + | 82 | 152963972 | Krad_R0049 | - | 15 Leu tRNA
|

3936472 | 3936836 | - | 365 | 152963972 | Krad_R0050 | - | tmRNA |

3963079 | 3963194 | - | 116 | 152963972 | Krad_R0051 | - | 5S ribosomal RNA |

3963399 | 3966545 | - | 3147 | 152963972 | Krad_R0052 | - | 23S ribosomal RNA |

3967152 | 3968663 | - | 1512 | 152963972 | Krad_R0053 | - | 16S ribosomal RNA |

4229114 | 4229186 | + | 73 | 152963972 | Krad_R0054 | - | 04 Glu tRNA
|

4229288 | 4229361 | + | 74 | 152963972 | Krad_R0055 | - | 06 Asp tRNA
|

4229393 | 4229468 | + | 76 | 152963972 | Krad_R0056 | - | 17 Phe tRNA
|

4440206 | 4440279 | - | 74 | 152963972 | Krad_R0057 | - | 01 Gly tRNA
|

4577008 | 4577123 | - | 116 | 152963972 | Krad_R0058 | - | 5S ribosomal RNA |

4577328 | 4580474 | - | 3147 | 152963972 | Krad_R0059 | - | 23S ribosomal RNA |

4581081 | 4582592 | - | 1512 | 152963972 | Krad_R0060 | - | 16S ribosomal RNA |

4664408 | 4664523 | - | 116 | 152963972 | Krad_R0061 | - | 5S ribosomal RNA |

4664728 | 4667874 | - | 3147 | 152963972 | Krad_R0062 | - | 23S ribosomal RNA |

4668481 | 4669992 | - | 1512 | 152963972 | Krad_R0063 | - | 16S ribosomal RNA |

4721666 | 4721738 | + | 73 | 152963972 | Krad_R0064 | - | 01 Gly tRNA
|