Материалы:NC 008699

LOCUS NC_008699 4985871 bp DNA circular BCT 21-DEC-2006 DEFINITION Nocardioides sp. JS614, complete genome. ACCESSION NC_008699 VERSION NC_008699.1 GI:119714272 KEYWORDS . SOURCE Nocardioides sp. JS614 ORGANISM Nocardioides sp. JS614 Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Propionibacterineae; Nocardioidaceae; Nocardioides. REFERENCE 1 (bases 1 to 4985871) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T., Gossett,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromosome1 of Nocardioides sp. JS614 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4985871) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (21-DEC-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4985871) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T., Gossett,J. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000509. URL -- http://www.jgi.doe.gov JGI Project ID: 3634503 Source DNA and bacteria available from James Gossett (jmg18@cornell.edu) Contacts: James Gossett (jmg18@cornell.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

11935 | 12008 | + | 74 | 119714272 | Noca_R0001 | - | 14 Ile tRNA
|

12276 | 12351 | + | 76 | 119714272 | Noca_R0002 | - | 02 Ala tRNA
|

32617 | 32700 | + | 84 | 119714272 | Noca_R0003 | - | 15 Leu tRNA
|

196527 | 196614 | - | 88 | 119714272 | Noca_R0004 | - | 08 Ser tRNA
|

197696 | 197788 | + | 93 | 119714272 | Noca_R0005 | - | 08 Ser tRNA
|

202663 | 202735 | + | 73 | 119714272 | Noca_R0006 | - | 11 Arg tRNA
|

303375 | 303464 | + | 90 | 119714272 | Noca_R0007 | - | 08 Ser tRNA
|

339643 | 339731 | - | 89 | 119714272 | Noca_R0008 | - | 08 Ser tRNA
|

339855 | 339945 | + | 91 | 119714272 | Noca_R0009 | - | SRP RNA; RNA component of signal recognition particle |

347117 | 347193 | - | 77 | 119714272 | Noca_R0010 | - | 03 Pro tRNA
|

425150 | 425225 | + | 76 | 119714272 | Noca_R0011 | - | 12 Thr tRNA
|

595077 | 595158 | + | 82 | 119714272 | Noca_R0012 | - | 18 Tyr tRNA
|

709261 | 709333 | + | 73 | 119714272 | Noca_R0013 | - | 12 Thr tRNA
|

709389 | 709462 | + | 74 | 119714272 | Noca_R0014 | - | 16 Met tRNA
|

733698 | 733773 | + | 76 | 119714272 | Noca_R0015 | - | 20 Trp tRNA
|

827249 | 827324 | - | 76 | 119714272 | Noca_R0016 | - | 11 Arg tRNA
|

838947 | 839022 | + | 76 | 119714272 | Noca_R0017 | - | 02 Ala tRNA
|

950002 | 950080 | + | 79 | 119714272 | Noca_R0018 | - | 05 Gln tRNA
|

981354 | 981430 | + | 77 | 119714272 | Noca_R0019 | - | 15 Leu tRNA
|

1348591 | 1348958 | + | 368 | 119714272 | Noca_R0021 | - | |

1396961 | 1397045 | - | 85 | 119714272 | Noca_R0022 | - | 15 Leu tRNA
|

1410376 | 1410451 | - | 76 | 119714272 | Noca_R0023 | - | 10 Lys tRNA
|

1428940 | 1429015 | - | 76 | 119714272 | Noca_R0024 | - | 09 His tRNA
|

1436447 | 1436523 | - | 77 | 119714272 | Noca_R0025 | - | 11 Arg tRNA
|

1625605 | 1625681 | + | 77 | 119714272 | Noca_R0026 | - | 16 Met tRNA
|

1693513 | 1693597 | + | 85 | 119714272 | Noca_R0027 | - | 16 Met tRNA
|

1850749 | 1850821 | - | 73 | 119714272 | Noca_R0028 | - | 11 Arg tRNA
|

1942709 | 1942784 | + | 76 | 119714272 | Noca_R0029 | - | 02 Ala tRNA
|

2081097 | 2081169 | + | 73 | 119714272 | Noca_R0030 | - | 07 Asn tRNA
|

2095934 | 2096010 | + | 77 | 119714272 | Noca_R0031 | - | 16 Met tRNA
|

2113497 | 2115016 | + | 1520 | 119714272 | Noca_R0032 | - | 16S ribosomal RNA |

2115459 | 2118586 | + | 3128 | 119714272 | Noca_R0033 | - | 23S ribosomal RNA |

2118714 | 2118830 | + | 117 | 119714272 | Noca_R0034 | - | 5S ribosomal RNA |

2136462 | 2136536 | + | 75 | 119714272 | Noca_R0035 | - | 13 Val tRNA
|

2178789 | 2179125 | - | 337 | 119714272 | Noca_R0036 | - | rnpB RNA |

2523391 | 2523465 | - | 75 | 119714272 | Noca_R0037 | - | 13 Val tRNA
|

2523490 | 2523563 | - | 74 | 119714272 | Noca_R0038 | - | 19 Cys tRNA
|

2523595 | 2523667 | - | 73 | 119714272 | Noca_R0039 | - | 01 Gly tRNA
|

2525215 | 2525289 | + | 75 | 119714272 | Noca_R0040 | - | 13 Val tRNA
|

2638556 | 2640075 | + | 1520 | 119714272 | Noca_R0041 | - | 16S ribosomal RNA |

2640518 | 2643645 | + | 3128 | 119714272 | Noca_R0042 | - | 23S ribosomal RNA |

2643773 | 2643889 | + | 117 | 119714272 | Noca_R0043 | - | 5S ribosomal RNA |

2671978 | 2672054 | + | 77 | 119714272 | Noca_R0044 | - | 03 Pro tRNA
|

2788065 | 2788153 | - | 89 | 119714272 | Noca_R0045 | - | 15 Leu tRNA
|

3215698 | 3215771 | + | 74 | 119714272 | Noca_R0046 | - | 15 Leu tRNA
|

3539648 | 3539723 | - | 76 | 119714272 | Noca_R0048 | - | 04 Glu tRNA
|

3539813 | 3539887 | - | 75 | 119714272 | Noca_R0049 | - | 05 Gln tRNA
|

3690972 | 3691044 | - | 73 | 119714272 | Noca_R0050 | - | 03 Pro tRNA
|

3691089 | 3691162 | - | 74 | 119714272 | Noca_R0051 | - | 01 Gly tRNA
|

4231439 | 4231514 | - | 76 | 119714272 | Noca_R0053 | - | 12 Thr tRNA
|

4514690 | 4514765 | + | 76 | 119714272 | Noca_R0054 | - | 10 Lys tRNA
|

4533618 | 4533694 | - | 77 | 119714272 | Noca_R0055 | - | 06 Asp tRNA
|

4533809 | 4533884 | - | 76 | 119714272 | Noca_R0056 | - | 04 Glu tRNA
|

4534026 | 4534102 | + | 77 | 119714272 | Noca_R0057 | - | 17 Phe tRNA
|

4668644 | 4668719 | + | 76 | 119714272 | Noca_R0058 | - | 01 Gly tRNA
|