Материалы:NC 008312

LOCUS NC_008312 7750108 bp DNA circular BCT 08-AUG-2007 DEFINITION Trichodesmium erythraeum IMS101, complete genome. ACCESSION NC_008312 VERSION NC_008312.1 GI:113473942 KEYWORDS . SOURCE Trichodesmium erythraeum IMS101 ORGANISM Trichodesmium erythraeum IMS101 Bacteria; Cyanobacteria; Oscillatoriales; Trichodesmium. REFERENCE 1 (bases 1 to 7750108) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Trichodesmium erythraeum IMS101 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7750108) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-AUG-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 7750108) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (21-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000393. URL -- http://www.jgi.doe.gov JGI Project ID: 2662189 Source DNA and bacteria available from John B. Waterbury (jwaterbury@whoi.edu) Contacts: John B. Waterbury (jwaterbury@whoi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Notes: The following regions have an unresolved number of repeat copies: 2426365-2431895, 3531561-3532440, 4808319-4799188, 5967783-5973981, 7275245-7279260. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

272619 | 272692 | - | 74 | 113473942 | Tery_R0001 | - | 13 Val tRNA
|

280981 | 281054 | + | 74 | 113473942 | Tery_R0002 | - | 06 Asp tRNA
|

367817 | 367889 | - | 73 | 113473942 | Tery_R0003 | - | 16 Met tRNA
|

412296 | 412368 | - | 73 | 113473942 | Tery_R0004 | - | 20 Trp tRNA
|

572149 | 572221 | - | 73 | 113473942 | Tery_R0005 | - | 04 Glu tRNA
|

869671 | 869743 | - | 73 | 113473942 | Tery_R0006 | - | 17 Phe tRNA
|

1212925 | 1213011 | - | 87 | 113473942 | Tery_R0007 | - | 08 Ser tRNA
|

1900405 | 1900476 | - | 72 | 113473942 | Tery_R0008 | - | 07 Asn tRNA
|

2171224 | 2171295 | + | 72 | 113473942 | Tery_R0009 | - | 01 Gly tRNA
|

2447382 | 2447483 | + | 102 | 113473942 | Tery_R0010 | - | SRP RNA; RNA component of signal recognition particle |

2502921 | 2502994 | + | 74 | 113473942 | Tery_R0011 | - | 03 Pro tRNA
|

2690413 | 2690485 | + | 73 | 113473942 | Tery_R0012 | - | 02 Ala tRNA
|

2955814 | 2955895 | + | 82 | 113473942 | Tery_R0013 | - | 15 Leu tRNA
|

3137164 | 3138645 | + | 1482 | 113473942 | Tery_R0014 | - | 16S ribosomal RNA |

3138776 | 3138852 | + | 77 | 113473942 | Tery_R0015 | - | 14 Ile tRNA
|

3138864 | 3138936 | + | 73 | 113473942 | Tery_R0016 | - | 02 Ala tRNA
|

3139115 | 3141995 | + | 2881 | 113473942 | Tery_R0017 | - | 23S ribosomal RNA |

3279184 | 3279256 | + | 73 | 113473942 | Tery_R0018 | - | 16 Met tRNA
|

3280098 | 3280170 | + | 73 | 113473942 | Tery_R0019 | - | 16 Met tRNA
|

3343975 | 3344047 | - | 73 | 113473942 | Tery_R0020 | - | 12 Thr tRNA
|

3463816 | 3464174 | - | 359 | 113473942 | Tery_R0021 | - | RNA component of RNaseP |

3785863 | 3785935 | + | 73 | 113473942 | Tery_R0022 | - | 11 Arg tRNA
|

3792558 | 3792654 | - | 97 | 113473942 | Tery_R0023 | - | |

4198353 | 4198442 | + | 90 | 113473942 | Tery_R0024 | - | 08 Ser tRNA
|

4204343 | 4204415 | - | 73 | 113473942 | Tery_R0025 | - | 11 Arg tRNA
|

4598528 | 4601408 | - | 2881 | 113473942 | Tery_R0026 | - | 23S ribosomal RNA |

4601587 | 4601659 | - | 73 | 113473942 | Tery_R0027 | - | 02 Ala tRNA
|

4601671 | 4601747 | - | 77 | 113473942 | Tery_R0028 | - | 14 Ile tRNA
|

4601878 | 4603359 | - | 1482 | 113473942 | Tery_R0029 | - | 16S ribosomal RNA |

4812963 | 4813033 | - | 71 | 113473942 | Tery_R0030 | - | 01 Gly tRNA
|

4846872 | 4846955 | - | 84 | 113473942 | Tery_R0031 | - | 15 Leu tRNA
|

5151622 | 5151693 | - | 72 | 113473942 | Tery_R0032 | - | 05 Gln tRNA
|

5267766 | 5267839 | + | 74 | 113473942 | Tery_R0033 | - | 03 Pro tRNA
|

5424986 | 5425170 | - | 185 | 113473942 | Tery_R0034 | - | |

5573494 | 5573567 | + | 74 | 113473942 | Tery_R0035 | - | 11 Arg tRNA
|

5630800 | 5630872 | - | 73 | 113473942 | Tery_R0036 | - | 09 His tRNA
|

5694355 | 5694435 | - | 81 | 113473942 | Tery_R0037 | - | 15 Leu tRNA
|

5741481 | 5741562 | + | 82 | 113473942 | Tery_R0038 | - | 18 Tyr tRNA
|

5741588 | 5741659 | + | 72 | 113473942 | Tery_R0039 | - | 12 Thr tRNA
|

5852521 | 5852592 | - | 72 | 113473942 | Tery_R0040 | - | 13 Val tRNA
|

5974625 | 5974709 | - | 85 | 113473942 | Tery_R0041 | - | 08 Ser tRNA
|

6170197 | 6170278 | - | 82 | 113473942 | Tery_R0042 | - | 15 Leu tRNA
|

6323345 | 6323416 | - | 72 | 113473942 | Tery_R0043 | - | 10 Lys tRNA
|

6399951 | 6400035 | + | 85 | 113473942 | Tery_R0044 | - | 08 Ser tRNA
|

6426812 | 6426883 | + | 72 | 113473942 | Tery_R0045 | - | 19 Cys tRNA
|

6712130 | 6712246 | - | 117 | 113473942 | Tery_R0046 | - | 5S ribosomal RNA |

6935042 | 6935125 | + | 84 | 113473942 | Tery_R0047 | - | 15 Leu tRNA
|

7574767 | 7575161 | + | 395 | 113473942 | Tery_R0048 | - | tmRNA |