Материалы:NC 008060

LOCUS NC_008060 3294563 bp DNA circular BCT 19-JUN-2007 DEFINITION Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. ACCESSION NC_008060 VERSION NC_008060.1 GI:107021562 KEYWORDS . SOURCE Burkholderia cenocepacia AU 1054 ORGANISM Burkholderia cenocepacia AU 1054 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex. REFERENCE 1 (bases 1 to 3294563) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., LiPuma,J.J., Konstantinidis,K., Tiedje,J.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome 1 of Burkholderia cenocepacia AU 1054 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3294563) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (05-JUN-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3294563) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., LiPuma,J.J., Konstantinidis,K., Tiedje,J.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (12-MAY-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000378. URL -- http://www.jgi.doe.gov JGI Project ID: 3635680 Source DNA and bacteria available from James M Tiedje (tiedjej@msu.edu) Contacts: James M Tiedje (tiedjej@msu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

51091 | 51167 | - | 77 | 107021562 | Bcen_R0001 | - | 13 Val tRNA
|

57385 | 58910 | + | 1526 | 107021562 | Bcen_R0002 | - | 16S ribosomal RNA |

59301 | 62181 | + | 2881 | 107021562 | Bcen_R0003 | - | 23S ribosomal RNA |

62333 | 62445 | + | 113 | 107021562 | Bcen_R0004 | - | 5S ribosomal RNA |

103223 | 103299 | - | 77 | 107021562 | Bcen_R0005 | - | 03 Pro tRNA
|

208337 | 208683 | + | 347 | 107021562 | Bcen_R0006 | - | RNA component of RNaseP |

352508 | 352584 | - | 77 | 107021562 | Bcen_R0007 | - | 10 Lys tRNA
|

482680 | 482754 | - | 75 | 107021562 | Bcen_R0008 | - | 01 Gly tRNA
|

545108 | 545198 | + | 91 | 107021562 | Bcen_R0009 | - | 08 Ser tRNA
|

557255 | 557342 | - | 88 | 107021562 | Bcen_R0010 | - | 08 Ser tRNA
|

564666 | 564742 | - | 77 | 107021562 | Bcen_R0011 | - | 11 Arg tRNA
|

564804 | 564880 | - | 77 | 107021562 | Bcen_R0012 | - | 11 Arg tRNA
|

564947 | 565023 | - | 77 | 107021562 | Bcen_R0013 | - | 11 Arg tRNA
|

574786 | 574861 | - | 76 | 107021562 | Bcen_R0014 | - | 12 Thr tRNA
|

580656 | 580798 | - | 143 | 107021562 | Bcen_R0015 | - | |

604652 | 605021 | - | 370 | 107021562 | Bcen_R0016 | - | tmRNA |

665799 | 665874 | - | 76 | 107021562 | Bcen_R0017 | - | 07 Asn tRNA
|

665947 | 666022 | - | 76 | 107021562 | Bcen_R0018 | - | 07 Asn tRNA
|

712015 | 712090 | + | 76 | 107021562 | Bcen_R0019 | - | 01 Gly tRNA
|

712144 | 712219 | + | 76 | 107021562 | Bcen_R0020 | - | 01 Gly tRNA
|

712271 | 712346 | + | 76 | 107021562 | Bcen_R0021 | - | 01 Gly tRNA
|

712446 | 712519 | + | 74 | 107021562 | Bcen_R0022 | - | 19 Cys tRNA
|

809928 | 810044 | - | 117 | 107021562 | Bcen_R0023 | - | |

898109 | 898185 | - | 77 | 107021562 | Bcen_R0024 | - | 03 Pro tRNA
|

907484 | 907560 | + | 77 | 107021562 | Bcen_R0025 | - | 11 Arg tRNA
|

1083794 | 1083870 | + | 77 | 107021562 | Bcen_R0026 | - | 13 Val tRNA
|

1095564 | 1095640 | + | 77 | 107021562 | Bcen_R0027 | - | 03 Pro tRNA
|

1164581 | 1164667 | - | 87 | 107021562 | Bcen_R0028 | - | 15 Leu tRNA
|

1164930 | 1165016 | - | 87 | 107021562 | Bcen_R0029 | - | 15 Leu tRNA
|

1166305 | 1166391 | - | 87 | 107021562 | Bcen_R0030 | - | 15 Leu tRNA
|

1179175 | 1179251 | - | 77 | 107021562 | Bcen_R0031 | - | 16 Met tRNA
|

1187405 | 1187480 | + | 76 | 107021562 | Bcen_R0032 | - | 09 His tRNA
|

1292169 | 1292404 | - | 236 | 107021562 | Bcen_R0033 | - | |

1294761 | 1295027 | + | 267 | 107021562 | Bcen_R0034 | - | |

1317331 | 1317522 | - | 192 | 107021562 | Bcen_R0035 | - | |

1782649 | 1782761 | - | 113 | 107021562 | Bcen_R0036 | - | 5S ribosomal RNA |

1782916 | 1785796 | - | 2881 | 107021562 | Bcen_R0037 | - | 23S ribosomal RNA |

1786073 | 1786148 | - | 76 | 107021562 | Bcen_R0038 | - | 02 Ala tRNA
|

1786187 | 1786263 | - | 77 | 107021562 | Bcen_R0039 | - | 14 Ile tRNA
|

1786326 | 1787852 | - | 1527 | 107021562 | Bcen_R0040 | - | 16S ribosomal RNA |

1818771 | 1818855 | - | 85 | 107021562 | Bcen_R0041 | - | 15 Leu tRNA
|

1944051 | 1944125 | + | 75 | 107021562 | Bcen_R0042 | - | 11 Arg tRNA
|

1962957 | 1963033 | + | 77 | 107021562 | Bcen_R0043 | - | 16 Met tRNA
|

2043833 | 2044082 | - | 250 | 107021562 | Bcen_R0044 | - | |

2065365 | 2065449 | + | 85 | 107021562 | Bcen_R0045 | - | 15 Leu tRNA
|

2259311 | 2259387 | + | 77 | 107021562 | Bcen_R0046 | - | 16 Met tRNA
|

2294173 | 2294321 | - | 149 | 107021562 | Bcen_R0047 | - | |

2414430 | 2414506 | + | 77 | 107021562 | Bcen_R0048 | - | 05 Gln tRNA
|

2751393 | 2751468 | - | 76 | 107021562 | Bcen_R0049 | - | 17 Phe tRNA
|

2770392 | 2770467 | + | 76 | 107021562 | Bcen_R0050 | - | 10 Lys tRNA
|

2812186 | 2812298 | - | 113 | 107021562 | Bcen_R0051 | - | 5S ribosomal RNA |

2812453 | 2815334 | - | 2882 | 107021562 | Bcen_R0052 | - | 23S ribosomal RNA |

2815610 | 2815685 | - | 76 | 107021562 | Bcen_R0053 | - | 02 Ala tRNA
|

2815727 | 2815803 | - | 77 | 107021562 | Bcen_R0054 | - | 14 Ile tRNA
|

2815867 | 2817392 | - | 1526 | 107021562 | Bcen_R0055 | - | 16S ribosomal RNA |

2935523 | 2935598 | - | 76 | 107021562 | Bcen_R0056 | - | 12 Thr tRNA
|

2963870 | 2963993 | - | 124 | 107021562 | Bcen_R0057 | - | |

3040727 | 3040802 | - | 76 | 107021562 | Bcen_R0058 | - | 20 Trp tRNA
|

3042119 | 3042193 | - | 75 | 107021562 | Bcen_R0059 | - | 12 Thr tRNA
|

3042216 | 3042289 | - | 74 | 107021562 | Bcen_R0060 | - | 01 Gly tRNA
|

3042333 | 3042418 | - | 86 | 107021562 | Bcen_R0061 | - | 18 Tyr tRNA
|

3044471 | 3044583 | - | 113 | 107021562 | Bcen_R0062 | - | 5S ribosomal RNA |

3044735 | 3047615 | - | 2881 | 107021562 | Bcen_R0063 | - | 23S ribosomal RNA |

3047892 | 3047967 | - | 76 | 107021562 | Bcen_R0064 | - | 02 Ala tRNA
|

3048006 | 3048082 | - | 77 | 107021562 | Bcen_R0065 | - | 14 Ile tRNA
|

3048145 | 3049671 | - | 1527 | 107021562 | Bcen_R0066 | - | 16S ribosomal RNA |

3091966 | 3092041 | - | 76 | 107021562 | Bcen_R0067 | - | 02 Ala tRNA
|

3198615 | 3198690 | - | 76 | 107021562 | Bcen_R0068 | - | 11 Arg tRNA
|

3205198 | 3205301 | + | 104 | 107021562 | Bcen_R0069 | - | |

3205342 | 3205470 | + | 129 | 107021562 | Bcen_R0070 | - |