Материалы:NC 007520

LOCUS NC_007520 2427734 bp DNA circular BCT 22-NOV-2006 DEFINITION Thiomicrospira crunogena XCL-2, complete genome. ACCESSION NC_007520 VERSION NC_007520.2 GI:118139508 KEYWORDS . SOURCE Thiomicrospira crunogena XCL-2 ORGANISM Thiomicrospira crunogena XCL-2 Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Thiomicrospira. REFERENCE 1 (bases 1 to 2427734) AUTHORS Scott,K.M., Sievert,S.M., Abril,F.N., Ball,L.A., Barrett,C.J., Blake,R.A., Boller,A.J., Chain,P.S., Clark,J.A., Davis,C.R., Detter,C., Do,K.F., Dobrinski,K.P., Faza,B.I., Fitzpatrick,K.A., Freyermuth,S.K., Harmer,T.L., Hauser,L.J., Hugler,M., Kerfeld,C.A., Klotz,M.G., Kong,W.W., Land,M., Lapidus,A., Larimer,F.W., Longo,D.L., Lucas,S., Malfatti,S.A., Massey,S.E., Martin,D.D., McCuddin,Z., Meyer,F., Moore,J.L., Ocampo,L.H., Paul,J.H., Paulsen,I.T., Reep,D.K., Ren,Q., Ross,R.L., Sato,P.Y., Thomas,P., Tinkham,L.E. and Zeruth,G.T. CONSRTM US DOE Joint Genome Institute TITLE The Genome of Deep-Sea Vent Chemolithoautotroph Thiomicrospira crunogena XCL-2 JOURNAL (er) PLoS Biol. 4 (12), E383 (2006) PUBMED 17105352 REFERENCE 2 (bases 1 to 2427734) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-NOV-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2427734) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Schmutz,J., Chain,P., Malfatti,S., Shin,M., Vergez,L., Larimer,F., Land,M., Lykidis,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000109. On Nov 17, 2006 this sequence version replaced gi:78484346. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Kathleen Scott (kscott@cas.usf.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LLNL Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

328455 | 328539 | + | 85 | 118139508 | Tcr_R0001 | - | 18 Tyr tRNA
|

328562 | 328636 | + | 75 | 118139508 | Tcr_R0002 | - | 01 Gly tRNA
|

328707 | 328782 | + | 76 | 118139508 | Tcr_R0003 | - | 12 Thr tRNA
|

330124 | 330200 | + | 77 | 118139508 | Tcr_R0004 | - | 20 Trp tRNA
|

442921 | 442995 | + | 75 | 118139508 | Tcr_R0005 | - | 05 Gln tRNA
|

446774 | 446850 | + | 77 | 118139508 | Tcr_R0006 | - | 16 Met tRNA
|

590549 | 590624 | + | 76 | 118139508 | Tcr_R0007 | - | 07 Asn tRNA
|

591784 | 591898 | + | 115 | 118139508 | Tcr_R0008 | - | SRP RNA; RNA component of signal recognitionparticle |

617698 | 617774 | + | 77 | 118139508 | Tcr_R0009 | - | 03 Pro tRNA
|

627897 | 628208 | + | 312 | 118139508 | Tcr_R0010 | - | RNA component of RNaseP |

793925 | 794000 | - | 76 | 118139508 | Tcr_R0011 | - | 09 His tRNA
|

794029 | 794105 | - | 77 | 118139508 | Tcr_R0012 | - | 11 Arg tRNA
|

794167 | 794243 | - | 77 | 118139508 | Tcr_R0013 | - | 03 Pro tRNA
|

839313 | 839403 | + | 91 | 118139508 | Tcr_R0014 | - | 08 Ser tRNA
|

839535 | 839611 | + | 77 | 118139508 | Tcr_R0015 | - | 11 Arg tRNA
|

889277 | 889361 | + | 85 | 118139508 | Tcr_R0016 | - | 15 Leu tRNA
|

904217 | 904293 | + | 77 | 118139508 | Tcr_R0017 | - | 16 Met tRNA
|

980488 | 980563 | + | 76 | 118139508 | Tcr_R0018 | - | 10 Lys tRNA
|

980611 | 980686 | + | 76 | 118139508 | Tcr_R0019 | - | 10 Lys tRNA
|

1243378 | 1243452 | + | 75 | 118139508 | Tcr_R0020 | - | 01 Gly tRNA
|

1243457 | 1243530 | + | 74 | 118139508 | Tcr_R0021 | - | 19 Cys tRNA
|

1243584 | 1243670 | + | 87 | 118139508 | Tcr_R0022 | - | 15 Leu tRNA
|

1288577 | 1288652 | + | 76 | 118139508 | Tcr_R0023 | - | 13 Val tRNA
|

1288670 | 1288746 | + | 77 | 118139508 | Tcr_R0024 | - | 06 Asp tRNA
|

1288784 | 1288859 | + | 76 | 118139508 | Tcr_R0025 | - | 13 Val tRNA
|

1288898 | 1288974 | + | 77 | 118139508 | Tcr_R0026 | - | 06 Asp tRNA
|

1331880 | 1331955 | - | 76 | 118139508 | Tcr_R0027 | - | 04 Glu tRNA
|

1332058 | 1332132 | - | 75 | 118139508 | Tcr_R0028 | - | 01 Gly tRNA
|

1332137 | 1332212 | - | 76 | 118139508 | Tcr_R0029 | - | 04 Glu tRNA
|

1332325 | 1332400 | - | 76 | 118139508 | Tcr_R0030 | - | 02 Ala tRNA
|

1469945 | 1470021 | - | 77 | 118139508 | Tcr_R0031 | - | 13 Val tRNA
|

1470038 | 1470124 | - | 87 | 118139508 | Tcr_R0032 | - | 15 Leu tRNA
|

1520762 | 1521116 | + | 355 | 118139508 | Tcr_R0033 | - | tmRNA |

1631987 | 1632101 | - | 115 | 118139508 | Tcr_R0034 | - | 5S ribosomal RNA |

1632269 | 1635129 | - | 2861 | 118139508 | Tcr_R0035 | - | 23S ribosomal RNA |

1635606 | 1635681 | - | 76 | 118139508 | Tcr_R0036 | - | 02 Ala tRNA
|

1635755 | 1635831 | - | 77 | 118139508 | Tcr_R0037 | - | 14 Ile tRNA
|

1635964 | 1637454 | - | 1491 | 118139508 | Tcr_R0038 | - | 16S ribosomal RNA |

1737521 | 1737612 | - | 92 | 118139508 | Tcr_R0039 | - | 08 Ser tRNA
|

1880915 | 1881005 | - | 91 | 118139508 | Tcr_R0040 | - | 08 Ser tRNA
|

1949799 | 1949913 | - | 115 | 118139508 | Tcr_R0041 | - | 5S ribosomal RNA |

1950081 | 1952941 | - | 2861 | 118139508 | Tcr_R0042 | - | 23S ribosomal RNA |

1953417 | 1953492 | - | 76 | 118139508 | Tcr_R0043 | - | 02 Ala tRNA
|

1953566 | 1953642 | - | 77 | 118139508 | Tcr_R0044 | - | 14 Ile tRNA
|

1953775 | 1955265 | - | 1491 | 118139508 | Tcr_R0045 | - | 16S ribosomal RNA |

1981549 | 1981625 | - | 77 | 118139508 | Tcr_R0046 | - | 16 Met tRNA
|

2038693 | 2038767 | - | 75 | 118139508 | Tcr_R0047 | - | 11 Arg tRNA
|

2134366 | 2134441 | - | 76 | 118139508 | Tcr_R0048 | - | 12 Thr tRNA
|

2136089 | 2136203 | - | 115 | 118139508 | Tcr_R0049 | - | 5S ribosomal RNA |

2136371 | 2139231 | - | 2861 | 118139508 | Tcr_R0050 | - | 23S ribosomal RNA |

2139707 | 2139782 | - | 76 | 118139508 | Tcr_R0051 | - | 02 Ala tRNA
|

2139856 | 2139932 | - | 77 | 118139508 | Tcr_R0052 | - | 14 Ile tRNA
|

2140065 | 2141555 | - | 1491 | 118139508 | Tcr_R0053 | - | 16S ribosomal RNA |

2345497 | 2345572 | + | 76 | 118139508 | Tcr_R0054 | - | 17 Phe tRNA
|

2345610 | 2345693 | + | 84 | 118139508 | Tcr_R0055 | - | 15 Leu tRNA
|