Материалы:NC 009138

LOCUS NC_009138 3424307 bp DNA circular BCT 26-MAR-2007 DEFINITION Herminiimonas arsenicoxydans, complete genome. ACCESSION NC_009138 VERSION NC_009138.1 GI:134093294 KEYWORDS . SOURCE Herminiimonas arsenicoxydans ORGANISM Herminiimonas arsenicoxydans Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas. REFERENCE 1 (bases 1 to 3424307) AUTHORS Muller,D., Medigue,C., Koechler,S., Barbe,V., Barakat,M., Talla,E., Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,N., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. TITLE A Tale of Two Oxidation States: Bacterial Colonization of Arsenic-Rich Environments JOURNAL Plos Genet. (2007) In press REMARK Annotation data relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS 7 : Gene remnant REFERENCE 2 (bases 1 to 3424307) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-MAR-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3424307) AUTHORS Genoscope. TITLE Direct Submission JOURNAL Submitted (12-MAR-2007) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) REMARK 1: UMR7156 CNRS & Universite Louis Pasteur, Strasbourg, France 2: Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA & Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4: UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur, Paris, France 6: UMR7509 CNRS & Universite Louis Pasteur, Strasbourg, France 7: UMR5100 CNRS, Toulouse, France 8: UMR5557 CNRS & Universite Claude Bernard - Lyon 1, Villeurbanne, France 9: UPR9036 CNRS, Marseille, France 10: UMR7517 CNRS & Universite Louis Pasteur, Strasbourg, France COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CU207211. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

30881 | 30982 | + | 102 | 134093294 | HEARmisc_RNA_5 | - | THI |

189743 | 189818 | - | 76 | 134093294 | HEARtRNA45 | - | 17 Phe tRNA
|

202826 | 204361 | + | 1536 | 134093294 | HEAR_16s_1 | - | ribosomal RNA 16s |

204476 | 204552 | + | 77 | 134093294 | HEARtRNA1 | - | 14 Ile tRNA
|

204573 | 204648 | + | 76 | 134093294 | HEARtRNA2 | - | 02 Ala tRNA
|

204951 | 207824 | + | 2874 | 134093294 | HEAR_23s_1 | - | ribosomal RNA 23s |

207986 | 208103 | + | 118 | 134093294 | HEAR_5s_1 | - | ribosomal RNA 5s |

208366 | 208441 | + | 76 | 134093294 | HEARtRNA3 | - | 12 Thr tRNA
|

328955 | 329062 | + | 108 | 134093294 | HEARmisc_RNA_6 | - | THI |

401229 | 401305 | - | 77 | 134093294 | HEARtRNA44 | - | 16 Met tRNA
|

442449 | 442527 | + | 79 | 134093294 | HEARtRNA4 | - | 16 Met tRNA
|

575061 | 576596 | + | 1536 | 134093294 | HEAR_16s_2 | - | ribosomal RNA 16s |

576711 | 576787 | + | 77 | 134093294 | HEARtRNA5 | - | 14 Ile tRNA
|

576808 | 576883 | + | 76 | 134093294 | HEARtRNA6 | - | 02 Ala tRNA
|

577186 | 580059 | + | 2874 | 134093294 | HEAR_23s_2 | - | ribosomal RNA 23s |

580220 | 580337 | + | 118 | 134093294 | HEAR_5s_2 | - | ribosomal RNA 5s |

595078 | 595154 | + | 77 | 134093294 | HEARtRNA7 | - | 03 Pro tRNA
|

701789 | 701873 | - | 85 | 134093294 | HEARtRNA43 | - | 15 Leu tRNA
|

922503 | 922578 | - | 76 | 134093294 | HEARtRNA42 | - | 09 His tRNA
|

927702 | 927792 | + | 91 | 134093294 | HEARtRNA8 | - | 08 Ser tRNA
|

943445 | 943547 | - | 103 | 134093294 | HEARmisc_RNA_7 | - | THI |

987457 | 987532 | + | 76 | 134093294 | HEARtRNA9 | - | 02 Ala tRNA
|

987571 | 987646 | + | 76 | 134093294 | HEARtRNA10 | - | 04 Glu tRNA
|

1004873 | 1004950 | + | 78 | 134093294 | HEARmisc_RNA_3 | - | Intron_gpII |

1036677 | 1036766 | + | 90 | 134093294 | HEARtRNA11 | - | 08 Ser tRNA
|

1052801 | 1052902 | + | 102 | 134093294 | HEARmisc_RNA_1 | - | putative SRP_bact |

1192516 | 1192592 | + | 77 | 134093294 | HEARtRNA12 | - | 03 Pro tRNA
|

1193456 | 1193532 | - | 77 | 134093294 | HEARtRNA41 | - | 11 Arg tRNA
|

1295685 | 1295769 | - | 85 | 134093294 | HEARtRNA40 | - | 15 Leu tRNA
|

1309047 | 1309140 | + | 94 | 134093294 | HEARtRNA13 | - | 08 Ser tRNA
|

1758776 | 1758852 | - | 77 | 134093294 | HEARtRNA39 | - | 06 Asp tRNA
|

1758888 | 1758963 | - | 76 | 134093294 | HEARtRNA38 | - | 13 Val tRNA
|

1765723 | 1765809 | - | 87 | 134093294 | HEARtRNA37 | - | 15 Leu tRNA
|

1806755 | 1806831 | - | 77 | 134093294 | HEARtRNA36 | - | 03 Pro tRNA
|

1814879 | 1814955 | - | 77 | 134093294 | HEARtRNA35 | - | 13 Val tRNA
|

1840117 | 1840201 | - | 85 | 134093294 | HEARtRNA34 | - | 15 Leu tRNA
|

1880122 | 1880198 | - | 77 | 134093294 | HEARtRNA33 | - | 11 Arg tRNA
|

1977415 | 1977501 | - | 87 | 134093294 | HEARtRNA32 | - | 15 Leu tRNA
|

1977561 | 1977634 | - | 74 | 134093294 | HEARtRNA31 | - | 19 Cys tRNA
|

2066139 | 2066214 | - | 76 | 134093294 | HEARtRNA30 | - | 01 Gly tRNA
|

2097571 | 2097745 | - | 175 | 134093294 | HEARmisc_RNA_4 | - | RFN |

2123464 | 2123553 | - | 90 | 134093294 | HEARtRNA29 | - | 08 Ser tRNA
|

2246882 | 2246957 | + | 76 | 134093294 | HEARtRNA14 | - | 07 Asn tRNA
|

2302582 | 2302656 | - | 75 | 134093294 | HEARtRNA28 | - | 13 Val tRNA
|

2385687 | 2385762 | + | 76 | 134093294 | HEARtRNA15 | - | 10 Lys tRNA
|

2413748 | 2413824 | - | 77 | 134093294 | HEARtRNA27 | - | 16 Met tRNA
|

2428705 | 2428779 | + | 75 | 134093294 | HEARtRNA16 | - | 11 Arg tRNA
|

2665524 | 2665597 | + | 74 | 134093294 | HEARtRNA17 | - | 01 Gly tRNA
|

2796781 | 2797042 | - | 262 | 134093294 | HEARmisc_RNA_2 | - | RNaseP_bact_a |

2869002 | 2869078 | + | 77 | 134093294 | HEARtRNA18 | - | 05 Gln tRNA
|

3006051 | 3006126 | - | 76 | 134093294 | HEARtRNA26 | - | 12 Thr tRNA
|

3136635 | 3136710 | - | 76 | 134093294 | HEARtRNA25 | - | 20 Trp tRNA
|

3138084 | 3138158 | - | 75 | 134093294 | HEARtRNA24 | - | 12 Thr tRNA
|

3138205 | 3138278 | - | 74 | 134093294 | HEARtRNA23 | - | 01 Gly tRNA
|

3138324 | 3138409 | - | 86 | 134093294 | HEARtRNA22 | - | 18 Tyr tRNA
|

3311308 | 3311383 | - | 76 | 134093294 | HEARtRNA21 | - | 11 Arg tRNA
|

3320840 | 3320915 | + | 76 | 134093294 | HEARtRNA19 | - | 13 Val tRNA
|

3320955 | 3321031 | + | 77 | 134093294 | HEARtRNA20 | - | 06 Asp tRNA
|