Материалы:NC 009511

LOCUS NC_009511 5382261 bp DNA circular BCT 14-AUG-2007 DEFINITION Sphingomonas wittichii RW1, complete genome. ACCESSION NC_009511 VERSION NC_009511.1 GI:148552929 KEYWORDS . SOURCE Sphingomonas wittichii RW1 ORGANISM Sphingomonas wittichii RW1 Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas. REFERENCE 1 (bases 1 to 5382261) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Halden,R.U., Miller,T.R., Salzberg,S.L., Eisen,J.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Sphingomonas wittichii RW1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5382261) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-JUN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5382261) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Halden,R.U., Miller,T.R., Salzberg,S.L., Eisen,J.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (08-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000699. URL -- http://www.jgi.doe.gov JGI Project ID: 4002524 Source DNA and bacteria available from Rolf Halden (rhalden@jhsph.edu) Contacts: Rolf Halden (rhalden@jhsph.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

47180 | 47254 | + | 75 | 148552929 | Swit_R0001 | - | 13 Val tRNA
|

53279 | 53379 | + | 101 | 148552929 | Swit_R0002 | - | SRP RNA; RNA component of signal recognition particle |

68827 | 69157 | + | 331 | 148552929 | Swit_R0003 | - | RNase P |

130034 | 130108 | - | 75 | 148552929 | Swit_R0004 | - | 13 Val tRNA
|

204481 | 204557 | - | 77 | 148552929 | Swit_R0005 | - | 11 Arg tRNA
|

413943 | 414018 | - | 76 | 148552929 | Swit_R0006 | - | 04 Glu tRNA
|

450513 | 450589 | - | 77 | 148552929 | Swit_R0007 | - | 11 Arg tRNA
|

515675 | 515764 | - | 90 | 148552929 | Swit_R0008 | - | 08 Ser tRNA
|

534208 | 534283 | + | 76 | 148552929 | Swit_R0009 | - | 10 Lys tRNA
|

598899 | 598972 | + | 74 | 148552929 | Swit_R0010 | - | 01 Gly tRNA
|

605479 | 605555 | - | 77 | 148552929 | Swit_R0011 | - | 11 Arg tRNA
|

647721 | 647805 | - | 85 | 148552929 | Swit_R0012 | - | 15 Leu tRNA
|

719543 | 719629 | + | 87 | 148552929 | Swit_R0013 | - | 15 Leu tRNA
|

941478 | 941552 | - | 75 | 148552929 | Swit_R0014 | - | 05 Gln tRNA
|

976105 | 976179 | + | 75 | 148552929 | Swit_R0015 | - | 12 Thr tRNA
|

1216985 | 1217059 | - | 75 | 148552929 | Swit_R0016 | - | 12 Thr tRNA
|

1233193 | 1233266 | + | 74 | 148552929 | Swit_R0017 | - | 19 Cys tRNA
|

1375211 | 1375286 | - | 76 | 148552929 | Swit_R0018 | - | 10 Lys tRNA
|

1564014 | 1564090 | + | 77 | 148552929 | Swit_R0019 | - | 11 Arg tRNA
|

1600789 | 1600865 | - | 77 | 148552929 | Swit_R0020 | - | 03 Pro tRNA
|

1690046 | 1690120 | + | 75 | 148552929 | Swit_R0021 | - | 07 Asn tRNA
|

2306328 | 2306404 | - | 77 | 148552929 | Swit_R0022 | - | 16 Met tRNA
|

2473596 | 2473669 | - | 74 | 148552929 | Swit_R0023 | - | 01 Gly tRNA
|

2696888 | 2696973 | - | 86 | 148552929 | Swit_R0024 | - | 18 Tyr tRNA
|

2730852 | 2730927 | + | 76 | 148552929 | Swit_R0025 | - | 02 Ala tRNA
|

2808482 | 2808558 | - | 77 | 148552929 | Swit_R0026 | - | 16 Met tRNA
|

2808722 | 2808841 | - | 120 | 148552929 | Swit_R0027 | - | 5S ribosomal RNA |

2808933 | 2811552 | - | 2620 | 148552929 | Swit_R0028 | - | 23S ribosomal RNA |

2811992 | 2812067 | - | 76 | 148552929 | Swit_R0029 | - | 02 Ala tRNA
|

2812084 | 2812160 | - | 77 | 148552929 | Swit_R0030 | - | 14 Ile tRNA
|

2812326 | 2813824 | - | 1499 | 148552929 | Swit_R0031 | - | 16S ribosomal RNA |

2821947 | 2822023 | + | 77 | 148552929 | Swit_R0032 | - | 03 Pro tRNA
|

2825070 | 2825146 | + | 77 | 148552929 | Swit_R0033 | - | 03 Pro tRNA
|

2843394 | 2843469 | + | 76 | 148552929 | Swit_R0034 | - | 20 Trp tRNA
|

3302252 | 3302338 | + | 87 | 148552929 | Swit_R0035 | - | 15 Leu tRNA
|

3680506 | 3680582 | - | 77 | 148552929 | Swit_R0036 | - | 03 Pro tRNA
|

3712655 | 3712745 | + | 91 | 148552929 | Swit_R0037 | - | 08 Ser tRNA
|

3762893 | 3762968 | - | 76 | 148552929 | Swit_R0038 | - | 02 Ala tRNA
|

3802685 | 3802761 | + | 77 | 148552929 | Swit_R0039 | - | 06 Asp tRNA
|

3844814 | 3846312 | + | 1499 | 148552929 | Swit_R0040 | - | 16S ribosomal RNA |

3846477 | 3846553 | + | 77 | 148552929 | Swit_R0041 | - | 14 Ile tRNA
|

3846570 | 3846645 | + | 76 | 148552929 | Swit_R0042 | - | 02 Ala tRNA
|

3847085 | 3849704 | + | 2620 | 148552929 | Swit_R0043 | - | 23S ribosomal RNA |

3849797 | 3849916 | + | 120 | 148552929 | Swit_R0044 | - | 5S ribosomal RNA |

3850079 | 3850155 | + | 77 | 148552929 | Swit_R0045 | - | 16 Met tRNA
|

4030547 | 4030621 | + | 75 | 148552929 | Swit_R0046 | - | 01 Gly tRNA
|

4277079 | 4277168 | - | 90 | 148552929 | Swit_R0047 | - | 08 Ser tRNA
|

4375752 | 4375828 | + | 77 | 148552929 | Swit_R0048 | - | 09 His tRNA
|

4383311 | 4383397 | + | 87 | 148552929 | Swit_R0049 | - | 15 Leu tRNA
|

4517782 | 4517857 | + | 76 | 148552929 | Swit_R0050 | - | 17 Phe tRNA
|

4913949 | 4914024 | + | 76 | 148552929 | Swit_R0051 | - | 13 Val tRNA
|

5028397 | 5028472 | + | 76 | 148552929 | Swit_R0052 | - | 16 Met tRNA
|

5063786 | 5063861 | + | 76 | 148552929 | Swit_R0053 | - | 12 Thr tRNA
|

5188077 | 5188150 | + | 74 | 148552929 | Swit_R0054 | - | 05 Gln tRNA
|

5207447 | 5207522 | + | 76 | 148552929 | Swit_R0055 | - | 04 Glu tRNA
|

5252412 | 5252504 | + | 93 | 148552929 | Swit_R0056 | - | 08 Ser tRNA
|