Материалы:NC 007517

LOCUS NC_007517 3997420 bp DNA circular BCT 30-MAR-2007 DEFINITION Geobacter metallireducens GS-15, complete genome. ACCESSION NC_007517 VERSION NC_007517.1 GI:78221228 KEYWORDS . SOURCE Geobacter metallireducens GS-15 ORGANISM Geobacter metallireducens GS-15 Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter. REFERENCE 1 (bases 1 to 3997420) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Geobacter metallireducens GS-15 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3997420) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-OCT-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3997420) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (11-OCT-2005) US DOE Joint Genome Institute, 2400 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000148. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Derek Lovley (dlovley@bio.umass.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

123486 | 123561 | + | 76 | 78221228 | Gmet_R0001 | - | 17 Phe tRNA
|

441608 | 441684 | + | 77 | 78221228 | Gmet_R0002 | - | 16 Met tRNA
|

443850 | 444176 | + | 327 | 78221228 | Gmet_R0003 | - | RNA component of RNaseP |

681964 | 682039 | + | 76 | 78221228 | Gmet_R0004 | - | 12 Thr tRNA
|

682062 | 682147 | + | 86 | 78221228 | Gmet_R0005 | - | 18 Tyr tRNA
|

682256 | 682332 | + | 77 | 78221228 | Gmet_R0006 | - | 01 Gly tRNA
|

682346 | 682421 | + | 76 | 78221228 | Gmet_R0007 | - | 12 Thr tRNA
|

683935 | 684011 | + | 77 | 78221228 | Gmet_R0008 | - | 20 Trp tRNA
|

958656 | 958743 | + | 88 | 78221228 | Gmet_R0009 | - | 15 Leu tRNA
|

1145263 | 1145339 | - | 77 | 78221228 | Gmet_R0010 | - | 11 Arg tRNA
|

1276464 | 1276561 | - | 98 | 78221228 | Gmet_R0059 | - | Sec tRNA |

1310143 | 1311690 | + | 1548 | 78221228 | Gmet_R0011 | - | 16S ribosomal RNA |

1311744 | 1311820 | + | 77 | 78221228 | Gmet_R0012 | - | 14 Ile tRNA
|

1311828 | 1311903 | + | 76 | 78221228 | Gmet_R0013 | - | 02 Ala tRNA
|

1312120 | 1315102 | + | 2983 | 78221228 | Gmet_R0014 | - | 23S ribosomal RNA |

1315202 | 1315318 | + | 117 | 78221228 | Gmet_R0015 | - | 5S ribosomal RNA |

1376436 | 1376522 | - | 87 | 78221228 | Gmet_R0016 | - | 15 Leu tRNA
|

1471254 | 1471328 | + | 75 | 78221228 | Gmet_R0017 | - | 05 Gln tRNA
|

1471390 | 1471464 | + | 75 | 78221228 | Gmet_R0018 | - | 04 Glu tRNA
|

1518769 | 1518855 | - | 87 | 78221228 | Gmet_R0019 | - | 15 Leu tRNA
|

1518981 | 1519056 | + | 76 | 78221228 | Gmet_R0020 | - | 02 Ala tRNA
|

1579288 | 1579362 | + | 75 | 78221228 | Gmet_R0021 | - | 13 Val tRNA
|

1586938 | 1587014 | + | 77 | 78221228 | Gmet_R0022 | - | 03 Pro tRNA
|

1590261 | 1590337 | + | 77 | 78221228 | Gmet_R0023 | - | 11 Arg tRNA
|

1605845 | 1605921 | + | 77 | 78221228 | Gmet_R0024 | - | 16 Met tRNA
|

1773332 | 1773406 | - | 75 | 78221228 | Gmet_R0025 | - | 13 Val tRNA
|

1848673 | 1849028 | + | 356 | 78221228 | Gmet_R0026 | - | tmRNA |

1850860 | 1850936 | - | 77 | 78221228 | Gmet_R0027 | - | 11 Arg tRNA
|

1999409 | 1999483 | + | 75 | 78221228 | Gmet_R0028 | - | 01 Gly tRNA
|

2084012 | 2084088 | - | 77 | 78221228 | Gmet_R0029 | - | 06 Asp tRNA
|

2084150 | 2084225 | - | 76 | 78221228 | Gmet_R0030 | - | 13 Val tRNA
|

2084233 | 2084309 | - | 77 | 78221228 | Gmet_R0031 | - | 06 Asp tRNA
|

2090156 | 2090238 | - | 83 | 78221228 | Gmet_R0032 | - | 15 Leu tRNA
|

2090298 | 2090374 | - | 77 | 78221228 | Gmet_R0033 | - | 09 His tRNA
|

2090388 | 2090464 | - | 77 | 78221228 | Gmet_R0034 | - | 11 Arg tRNA
|

2090470 | 2090547 | - | 78 | 78221228 | Gmet_R0035 | - | 03 Pro tRNA
|

2107482 | 2107558 | - | 77 | 78221228 | Gmet_R0036 | - | 16 Met tRNA
|

2177911 | 2177997 | + | 87 | 78221228 | Gmet_R0037 | - | 15 Leu tRNA
|

2178634 | 2178708 | - | 75 | 78221228 | Gmet_R0038 | - | 19 Cys tRNA
|

2582988 | 2583058 | - | 71 | 78221228 | Gmet_R0039 | - | |

2589986 | 2590060 | - | 75 | 78221228 | Gmet_R0040 | - | 01 Gly tRNA
|

3226815 | 3226889 | - | 75 | 78221228 | Gmet_R0041 | - | 05 Gln tRNA
|

3240983 | 3241100 | - | 118 | 78221228 | Gmet_R0042 | - | 5S ribosomal RNA |

3241199 | 3244181 | - | 2983 | 78221228 | Gmet_R0043 | - | 16S ribosomal RNA |

3244200 | 3244275 | - | 76 | 78221228 | Gmet_R0044 | - | 02 Ala tRNA
|

3244283 | 3244359 | - | 77 | 78221228 | Gmet_R0045 | - | 14 Ile tRNA
|

3244611 | 3246158 | - | 1548 | 78221228 | Gmet_R0046 | - | 16S ribosomal RNA |

3296070 | 3296144 | + | 75 | 78221228 | Gmet_R0047 | - | 12 Thr tRNA
|

3670283 | 3670358 | + | 76 | 78221228 | Gmet_R0048 | - | 10 Lys tRNA
|

3670409 | 3670486 | + | 78 | 78221228 | Gmet_R0049 | - | 04 Glu tRNA
|

3690064 | 3690139 | + | 76 | 78221228 | Gmet_R0050 | - | 02 Ala tRNA
|

3811323 | 3811399 | - | 77 | 78221228 | Gmet_R0051 | - | 03 Pro tRNA
|

3840934 | 3841043 | - | 110 | 78221228 | Gmet_R0052 | - | SRP RNA; RNA component of signal recognition particle |

3841036 | 3841123 | - | 88 | 78221228 | Gmet_R0053 | - | 08 Ser tRNA
|

3861510 | 3861599 | + | 90 | 78221228 | Gmet_R0054 | - | 08 Ser tRNA
|

3910770 | 3910845 | + | 76 | 78221228 | Gmet_R0055 | - | 07 Asn tRNA
|

3958841 | 3958917 | - | 77 | 78221228 | Gmet_R0056 | - | 11 Arg tRNA
|

3959466 | 3959558 | - | 93 | 78221228 | Gmet_R0057 | - | 08 Ser tRNA
|

3959579 | 3959664 | - | 86 | 78221228 | Gmet_R0058 | - | 08 Ser tRNA
|