Материалы:NC 002695

```
LOCUS NC_002695 5498450 bp DNA circular BCT 30-MAR-2007
DEFINITION Escherichia coli O157:H7 str. Sakai, complete genome.
ACCESSION NC_002695
VERSION NC_002695.1 GI:15829254
KEYWORDS .
SOURCE Escherichia coli O157:H7 str. Sakai
ORGANISM Escherichia coli O157:H7 str. Sakai
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (sites)
AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K.,
Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T.,
Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C.,
Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and
Shinagawa,H.
TITLE Complete genome sequence of enterohemorrhagic Escherichia coli
O157:H7 and genomic comparison with a laboratory strain K-12
JOURNAL DNA Res. 8 (1), 11-22 (2001)
PUBMED 11258796
REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96]
REFERENCE 2 (sites)
AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S.,
Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Abe,H., Iida,T.,
Yamamoto,K., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and
Shinagawa,H.
TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the
Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli
O157:H7 strain derived from the Sakai outbreak
JOURNAL Gene 258 (1-2), 127-139 (2000)
PUBMED 11111050
REFERENCE 3 (sites)
AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M.,
Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and
Hayashi,T.
TITLE Comparative analysis of the whole set of rRNA operons between an
enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an
Escherichia coli K-12 strain MG1655
JOURNAL Syst. Appl. Microbiol. 23 (3), 315-324 (2000)
PUBMED 11108008
REFERENCE 4 (sites)
AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S.,
Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T.,
Yamamoto,K., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T.,
Sasakawa,C. and Shinagawa,H.
TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the
verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7
derived from the Sakai outbreak
JOURNAL Genes Genet. Syst. 74 (5), 227-239 (1999)
PUBMED 10734605
REFERENCE 5 (bases 1 to 5498450)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 6 (bases 1 to 5498450)
CONSRTM NCBI Microbial Genomes Annotation Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from BA000007.
COMPLETENESS: full length.
REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
with comparison to original submitter provided annotation.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

227102 | 228643 | + | 1542 | 15829254 | ECs5366 | - | 16S ribosomal RNA |

228712 | 228788 | + | 77 | 15829254 | ECs5367 | - | 14 Ile tRNA
|

228831 | 228906 | + | 76 | 15829254 | ECs5368 | - | 02 Ala tRNA
|

229090 | 231992 | + | 2903 | 15829254 | ECs5369 | - | 23S ribosomal RNA |

232085 | 232204 | + | 120 | 15829254 | ECs5370 | - | 5S ribosomal RNA |

232257 | 232333 | + | 77 | 15829254 | ECs5371 | - | 06 Asp tRNA
|

240481 | 240557 | + | 77 | 15829254 | ECs5372 | - | 06 Asp tRNA
|

299982 | 300057 | + | 76 | 15829254 | ECs5373 | - | 12 Thr tRNA
|

542513 | 542626 | + | 114 | 15829254 | ECs5378 | - | 4.5S RNA |

657182 | 657258 | + | 77 | 15829254 | ECs5379 | - | 11 Arg tRNA
|

776591 | 776665 | - | 75 | 15829254 | ECs5384 | - | 05 Gln tRNA
|

776703 | 776777 | - | 75 | 15829254 | ECs5385 | - | 05 Gln tRNA
|

776826 | 776902 | - | 77 | 15829254 | ECs5386 | - | 16 Met tRNA
|

776918 | 776992 | - | 75 | 15829254 | ECs5387 | - | 05 Gln tRNA
|

777027 | 777101 | - | 75 | 15829254 | ECs5388 | - | 05 Gln tRNA
|

777125 | 777209 | - | 85 | 15829254 | ECs5389 | - | 15 Leu tRNA
|

777220 | 777296 | - | 77 | 15829254 | ECs5390 | - | 16 Met tRNA
|

864979 | 865054 | + | 76 | 15829254 | ECs5392 | - | 10 Lys tRNA
|

865090 | 865165 | + | 76 | 15829254 | ECs5393 | - | 13 Val tRNA
|

865168 | 865243 | + | 76 | 15829254 | ECs5394 | - | 10 Lys tRNA
|

865295 | 865370 | + | 76 | 15829254 | ECs5395 | - | 13 Val tRNA
|

865374 | 865449 | + | 76 | 15829254 | ECs5396 | - | 10 Lys tRNA
|

865596 | 865671 | + | 76 | 15829254 | ECs5397 | - | 10 Lys tRNA
|

1056961 | 1057048 | - | 88 | 15829254 | ECs5401 | - | 08 Ser tRNA
|

1165731 | 1165783 | - | 53 | 15829254 | ECs5402 | - | DicF antisense RNA |

1179418 | 1179493 | + | 76 | 15829254 | ECs5403 | - | 14 Ile tRNA
|

1179501 | 1179577 | + | 77 | 15829254 | ECs5404 | - | 11 Arg tRNA
|

1179591 | 1179667 | + | 77 | 15829254 | ECs5405 | - | 11 Arg tRNA
|

1210746 | 1210833 | - | 88 | 15829254 | ECs5407 | - | 08 Ser tRNA
|

1266623 | 1266698 | + | 76 | 15829254 | ECs5408 | - | 14 Ile tRNA
|

1266708 | 1266784 | + | 77 | 15829254 | ECs5409 | - | 11 Arg tRNA
|

1266798 | 1266874 | + | 77 | 15829254 | ECs5410 | - | 11 Arg tRNA
|

1456705 | 1456792 | - | 88 | 15829254 | ECs5416 | - | 08 Ser tRNA
|

1732289 | 1732373 | - | 85 | 15829254 | ECs5424 | - | 18 Tyr tRNA
|

1732583 | 1732667 | - | 85 | 15829254 | ECs5425 | - | 18 Tyr tRNA
|

1762085 | 1762135 | - | 51 | 15829254 | ECs5427 | - | DicF |

1773942 | 1774017 | + | 76 | 15829254 | ECs5429 | - | 14 Ile tRNA
|

1774098 | 1774174 | + | 77 | 15829254 | ECs5430 | - | 11 Arg tRNA
|

1940568 | 1940643 | + | 76 | 15829254 | ECs5434 | - | 14 Ile tRNA
|

1940651 | 1940730 | + | 80 | 15829254 | ECs5435 | - | Xaa tRNA |

1940744 | 1940820 | + | 77 | 15829254 | ECs5436 | - | 11 Arg tRNA
|

2189515 | 2189591 | - | 77 | 15829254 | ECs5447 | - | 11 Arg tRNA
|

2189605 | 2189684 | - | 80 | 15829254 | ECs5448 | - | Xaa tRNA |

2189692 | 2189767 | - | 76 | 15829254 | ECs5449 | - | 14 Ile tRNA
|

2201444 | 2201496 | + | 53 | 15829254 | ECs5450 | - | DicF |

2240486 | 2240562 | - | 77 | 15829254 | ECs5453 | - | 11 Arg tRNA
|

2240576 | 2240652 | - | 77 | 15829254 | ECs5454 | - | 11 Arg tRNA
|

2240660 | 2240735 | - | 76 | 15829254 | ECs5455 | - | 14 Ile tRNA
|

2250670 | 2250722 | + | 53 | 15829254 | ECs5459 | - | DicF antisense RNA |

2346146 | 2346222 | + | 77 | 15829254 | ECs5461 | - | 13 Val tRNA
|

2346227 | 2346303 | + | 77 | 15829254 | ECs5462 | - | 13 Val tRNA
|

2614087 | 2614173 | - | 87 | 15829254 | ECs5466 | - | 15 Leu tRNA
|

2614186 | 2614259 | - | 74 | 15829254 | ECs5467 | - | 19 Cys tRNA
|

2614313 | 2614388 | - | 76 | 15829254 | ECs5468 | - | 01 Gly tRNA
|

2649773 | 2649859 | - | 87 | 15829254 | ECs5469 | - | anti-sense RNA silencer of rcsA gene |

2697756 | 2697832 | - | 77 | 15829254 | ECs5471 | - | 11 Arg tRNA
|

2697846 | 2697922 | - | 77 | 15829254 | ECs5472 | - | 11 Arg tRNA
|

2697930 | 2698005 | - | 76 | 15829254 | ECs5473 | - | 14 Ile tRNA
|

2712036 | 2712125 | - | 90 | 15829254 | ECs5474 | - | 08 Ser tRNA
|

2713117 | 2713192 | + | 76 | 15829254 | ECs5475 | - | 07 Asn tRNA
|

2727498 | 2727573 | - | 76 | 15829254 | ECs5476 | - | 07 Asn tRNA
|

2729322 | 2729397 | + | 76 | 15829254 | ECs5477 | - | 07 Asn tRNA
|

2731730 | 2731805 | + | 76 | 15829254 | ECs5478 | - | 07 Asn tRNA
|

3021141 | 3021217 | + | 77 | 15829254 | ECs5483 | - | 03 Pro tRNA
|

3046071 | 3046163 | + | 93 | 15829254 | ECs5485 | - | MicF |

3192908 | 3192982 | + | 75 | 15829254 | ECs5488 | - | 11 Arg tRNA
|

3244824 | 3244899 | - | 76 | 15829254 | ECs5489 | - | 02 Ala tRNA
|

3244939 | 3245014 | - | 76 | 15829254 | ECs5490 | - | 02 Ala tRNA
|

3249460 | 3249535 | + | 76 | 15829254 | ECs5491 | - | 13 Val tRNA
|

3249580 | 3249655 | + | 76 | 15829254 | ECs5492 | - | 13 Val tRNA
|

3249702 | 3249777 | + | 76 | 15829254 | ECs5493 | - | 13 Val tRNA
|

3249782 | 3249857 | + | 76 | 15829254 | ECs5494 | - | 10 Lys tRNA
|

3446266 | 3446385 | - | 120 | 15829254 | ECs5499 | - | 5S ribosomal RNA |

3446478 | 3449380 | - | 2903 | 15829254 | ECs5500 | - | 23S ribosomal RNA |

3449574 | 3449649 | - | 76 | 15829254 | ECs5501 | - | 04 Glu tRNA
|

3449735 | 3451276 | - | 1542 | 15829254 | ECs5502 | - | 16S ribosomal RNA |

3475507 | 3475962 | + | 456 | 15829254 | ECs5503 | - | tmRNA |

3507947 | 3508022 | - | 76 | 15829254 | ECs5504 | - | 14 Ile tRNA
|

3541942 | 3542018 | - | 77 | 15829254 | ECs5505 | - | 11 Arg tRNA
|

3542121 | 3542197 | - | 77 | 15829254 | ECs5506 | - | 11 Arg tRNA
|

3542260 | 3542336 | - | 77 | 15829254 | ECs5507 | - | 11 Arg tRNA
|

3542401 | 3542477 | - | 77 | 15829254 | ECs5508 | - | 11 Arg tRNA
|

3542481 | 3542573 | - | 93 | 15829254 | ECs5509 | - | 08 Ser tRNA
|

3646556 | 3646924 | - | 369 | 15829254 | ECs5510 | - | CsrB |

3665096 | 3665208 | + | 113 | 15829254 | ECs5511 | - | GcvB |

3669787 | 3669863 | + | 77 | 15829254 | ECs5512 | - | 16 Met tRNA
|

3669897 | 3669973 | + | 77 | 15829254 | ECs5513 | - | 16 Met tRNA
|

3670007 | 3670083 | + | 77 | 15829254 | ECs5514 | - | 16 Met tRNA
|

3737314 | 3737387 | - | 74 | 15829254 | ECs5515 | - | 01 Gly tRNA
|

3793112 | 3793295 | + | 184 | 15829254 | ECs5516 | - | 6S RNA |

3851960 | 3852035 | + | 76 | 15829254 | ECs5517 | - | 17 Phe tRNA
|

3955129 | 3955204 | + | 76 | 15829254 | ECs5519 | - | 14 Ile tRNA
|

4009451 | 4009827 | - | 377 | 15829254 | ECs5520 | - | Rnase P RNA |

4060711 | 4060787 | - | 77 | 15829254 | ECs5521 | - | 16 Met tRNA
|

4064570 | 4064656 | - | 87 | 15829254 | ECs5522 | - | 15 Leu tRNA
|

4158428 | 4158547 | - | 120 | 15829254 | ECs5523 | - | 5S ribosomal RNA |

4158585 | 4158660 | - | 76 | 15829254 | ECs5524 | - | 12 Thr tRNA
|

4158673 | 4158792 | - | 120 | 15829254 | ECs5525 | - | 5S ribosomal RNA |

4158885 | 4161787 | - | 2903 | 15829254 | ECs5526 | - | 23S ribosomal RNA |

4161971 | 4162046 | - | 76 | 15829254 | ECs5527 | - | 02 Ala tRNA
|

4162089 | 4162165 | - | 77 | 15829254 | ECs5528 | - | 14 Ile tRNA
|

4162234 | 4163775 | - | 1542 | 15829254 | ECs5529 | - | 16S ribosomal RNA |

4450439 | 4450515 | - | 77 | 15829254 | ECs5535 | - | 03 Pro tRNA
|

4580769 | 4580863 | + | 95 | 15829254 | ECs5538 | - | Sec tRNA |

4735252 | 4736793 | + | 1542 | 15829254 | ECs5543 | - | 16S ribosomal RNA |

4736879 | 4736954 | + | 76 | 15829254 | ECs5544 | - | 04 Glu tRNA
|

4737148 | 4740052 | + | 2905 | 15829254 | ECs5545 | - | 23S ribosomal RNA |

4740145 | 4740264 | + | 120 | 15829254 | ECs5546 | - | 5S ribosomal RNA |

4740317 | 4740392 | + | 76 | 15829254 | ECs5547 | - | 06 Asp tRNA
|

4740401 | 4740476 | + | 76 | 15829254 | ECs5548 | - | 20 Trp tRNA
|

4775781 | 4775857 | + | 77 | 15829254 | ECs5550 | - | 11 Arg tRNA
|

4775916 | 4775991 | + | 76 | 15829254 | ECs5551 | - | 09 His tRNA
|

4776012 | 4776098 | + | 87 | 15829254 | ECs5552 | - | 15 Leu tRNA
|

4776142 | 4776215 | + | 74 | 15829254 | ECs5553 | - | Xaa tRNA |

4776238 | 4776324 | + | 87 | 15829254 | ECs5554 | - | 15 Leu tRNA
|

4776367 | 4776442 | + | 76 | 15829254 | ECs5555 | - | 03 Pro tRNA
|

4831654 | 4833195 | + | 1542 | 15829254 | ECs5557 | - | 16S ribosomal RNA |

4833264 | 4833340 | + | 77 | 15829254 | ECs5558 | - | 14 Ile tRNA
|

4833383 | 4833458 | + | 76 | 15829254 | ECs5559 | - | 02 Ala tRNA
|

4833642 | 4836546 | + | 2905 | 15829254 | ECs5560 | - | 23S ribosomal RNA |

4836639 | 4836758 | + | 120 | 15829254 | ECs5561 | - | 5S ribosomal RNA |

4845852 | 4845960 | + | 109 | 15829254 | ECs5563 | - | Spot 42 RNA |

4964922 | 4965031 | - | 110 | 15829254 | ECs5566 | - | OxyS RNA |

4975927 | 4977468 | + | 1542 | 15829254 | ECs5567 | - | 16S ribosomal RNA |

4977554 | 4977629 | + | 76 | 15829254 | ECs5568 | - | 04 Glu tRNA
|

4977823 | 4980727 | + | 2905 | 15829254 | ECs5569 | - | 23S ribosomal RNA |

4980820 | 4980939 | + | 120 | 15829254 | ECs5570 | - | 5S ribosomal RNA |

4984405 | 4984480 | + | 76 | 15829254 | ECs5571 | - | 12 Thr tRNA
|

4984489 | 4984573 | + | 85 | 15829254 | ECs5572 | - | 18 Tyr tRNA
|

4984690 | 4984764 | + | 75 | 15829254 | ECs5573 | - | 01 Gly tRNA
|

4984771 | 4984846 | + | 76 | 15829254 | ECs5574 | - | 12 Thr tRNA
|

5016953 | 5018494 | + | 1542 | 15829254 | ECs5576 | - | 16S ribosomal RNA |

5018580 | 5018655 | + | 76 | 15829254 | ECs5577 | - | 04 Glu tRNA
|

5018849 | 5021753 | + | 2905 | 15829254 | ECs5578 | - | 23S ribosomal RNA |

5021846 | 5021965 | + | 120 | 15829254 | ECs5579 | - | 5S ribosomal RNA |

5217002 | 5217077 | - | 76 | 15829254 | ECs5585 | - | 17 Phe tRNA
|

5246085 | 5246160 | + | 76 | 15829254 | ECs5587 | - | 01 Gly tRNA
|

5246197 | 5246272 | + | 76 | 15829254 | ECs5588 | - | 01 Gly tRNA
|

5246308 | 5246383 | + | 76 | 15829254 | ECs5589 | - | 01 Gly tRNA
|

5346999 | 5347083 | + | 85 | 15829254 | ECs5590 | - | 15 Leu tRNA
|

5464439 | 5464525 | - | 87 | 15829254 | ECs5594 | - | 15 Leu tRNA
|