Материалы:NC 009523

LOCUS NC_009523 5801598 bp DNA circular BCT 27-JUN-2007 DEFINITION Roseiflexus sp. RS-1, complete genome. ACCESSION NC_009523 VERSION NC_009523.1 GI:148654188 KEYWORDS . SOURCE Roseiflexus sp. RS-1 ORGANISM Roseiflexus sp. RS-1 Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae; Roseiflexus. REFERENCE 1 (bases 1 to 5801598) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Roseiflexus sp. RS-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5801598) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5801598) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (20-APR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000686. URL -- http://www.jgi.doe.gov JGI Project ID: 4000376 Source DNA and bacteria available from Donald Bryant (dab14@psu.edu) Contacts: Donald Bryant (dab14@psu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

183158 | 183232 | + | 75 | 148654188 | RoseRS_R0001 | - | 01 Gly tRNA
|

208798 | 208891 | - | 94 | 148654188 | RoseRS_R0002 | - | SRP RNA; RNA component of signal recognition particle |

209010 | 209086 | + | 77 | 148654188 | RoseRS_R0003 | - | 13 Val tRNA
|

503630 | 504025 | + | 396 | 148654188 | RoseRS_R0004 | - | RNA component of RNaseP |

622834 | 622908 | - | 75 | 148654188 | RoseRS_R0005 | - | 12 Thr tRNA
|

678592 | 678667 | - | 76 | 148654188 | RoseRS_R0006 | - | 01 Gly tRNA
|

866969 | 867042 | + | 74 | 148654188 | RoseRS_R0007 | - | 01 Gly tRNA
|

958788 | 958864 | - | 77 | 148654188 | RoseRS_R0008 | - | 03 Pro tRNA
|

967499 | 967587 | + | 89 | 148654188 | RoseRS_R0009 | - | 15 Leu tRNA
|

967589 | 967664 | + | 76 | 148654188 | RoseRS_R0010 | - | 13 Val tRNA
|

967706 | 967781 | + | 76 | 148654188 | RoseRS_R0011 | - | 17 Phe tRNA
|

1026564 | 1026639 | - | 76 | 148654188 | RoseRS_R0012 | - | 16 Met tRNA
|

1048580 | 1048655 | - | 76 | 148654188 | RoseRS_R0013 | - | 06 Asp tRNA
|

1048664 | 1048740 | - | 77 | 148654188 | RoseRS_R0014 | - | 04 Glu tRNA
|

1343196 | 1343270 | - | 75 | 148654188 | RoseRS_R0015 | - | 10 Lys tRNA
|

1414348 | 1415838 | + | 1491 | 148654188 | RoseRS_R0016 | - | 16S ribosomal RNA |

1415974 | 1418934 | + | 2961 | 148654188 | RoseRS_R0017 | - | 23S ribosomal RNA |

1419001 | 1419120 | + | 120 | 148654188 | RoseRS_R0018 | - | 5S ribosomal RNA |

1419123 | 1419197 | + | 75 | 148654188 | RoseRS_R0019 | - | 16 Met tRNA
|

1462567 | 1462643 | + | 77 | 148654188 | RoseRS_R0020 | - | 04 Glu tRNA
|

1731942 | 1732017 | - | 76 | 148654188 | RoseRS_R0021 | - | 02 Ala tRNA
|

1732062 | 1732138 | - | 77 | 148654188 | RoseRS_R0022 | - | 14 Ile tRNA
|

1785593 | 1785669 | - | 77 | 148654188 | RoseRS_R0023 | - | 13 Val tRNA
|

2020547 | 2020620 | - | 74 | 148654188 | RoseRS_R0024 | - | 05 Gln tRNA
|

2020657 | 2020743 | - | 87 | 148654188 | RoseRS_R0025 | - | 15 Leu tRNA
|

2190218 | 2190303 | + | 86 | 148654188 | RoseRS_R0026 | - | 15 Leu tRNA
|

2190325 | 2190401 | + | 77 | 148654188 | RoseRS_R0027 | - | 03 Pro tRNA
|

2276449 | 2276523 | - | 75 | 148654188 | RoseRS_R0028 | - | 16 Met tRNA
|

2340230 | 2340305 | - | 76 | 148654188 | RoseRS_R0029 | - | 10 Lys tRNA
|

2407769 | 2407844 | - | 76 | 148654188 | RoseRS_R0030 | - | 11 Arg tRNA
|

2675595 | 2675669 | - | 75 | 148654188 | RoseRS_R0031 | - | 07 Asn tRNA
|

2803528 | 2805018 | + | 1491 | 148654188 | RoseRS_R0032 | - | 16S ribosomal RNA |

2805154 | 2808114 | + | 2961 | 148654188 | RoseRS_R0033 | - | 23S ribosomal RNA |

2808181 | 2808300 | + | 120 | 148654188 | RoseRS_R0034 | - | 5S ribosomal RNA |

2808303 | 2808377 | + | 75 | 148654188 | RoseRS_R0035 | - | 16 Met tRNA
|

2904615 | 2904690 | - | 76 | 148654188 | RoseRS_R0036 | - | 02 Ala tRNA
|

2904697 | 2904772 | - | 76 | 148654188 | RoseRS_R0037 | - | 02 Ala tRNA
|

3911765 | 3911841 | + | 77 | 148654188 | RoseRS_R0038 | - | 03 Pro tRNA
|

3923676 | 3923761 | + | 86 | 148654188 | RoseRS_R0039 | - | 15 Leu tRNA
|

3993122 | 3993198 | - | 77 | 148654188 | RoseRS_R0040 | - | 11 Arg tRNA
|

4052554 | 4052644 | - | 91 | 148654188 | RoseRS_R0041 | - | 08 Ser tRNA
|

4055767 | 4055842 | + | 76 | 148654188 | RoseRS_R0042 | - | 20 Trp tRNA
|

4055881 | 4055972 | + | 92 | 148654188 | RoseRS_R0043 | - | 08 Ser tRNA
|

4055986 | 4056076 | + | 91 | 148654188 | RoseRS_R0044 | - | 08 Ser tRNA
|

4173039 | 4173125 | + | 87 | 148654188 | RoseRS_R0045 | - | 18 Tyr tRNA
|

4173201 | 4173276 | + | 76 | 148654188 | RoseRS_R0046 | - | 12 Thr tRNA
|

4428276 | 4428351 | + | 76 | 148654188 | RoseRS_R0047 | - | 12 Thr tRNA
|

4593759 | 4594123 | + | 365 | 148654188 | RoseRS_R0048 | - | tmRNA |

4655290 | 4655366 | + | 77 | 148654188 | RoseRS_R0049 | - | 11 Arg tRNA
|

4655425 | 4655514 | + | 90 | 148654188 | RoseRS_R0050 | - | 08 Ser tRNA
|

4676472 | 4676547 | + | 76 | 148654188 | RoseRS_R0051 | - | 11 Arg tRNA
|

4871342 | 4871416 | + | 75 | 148654188 | RoseRS_R0052 | - | 19 Cys tRNA
|

4929693 | 4929767 | + | 75 | 148654188 | RoseRS_R0053 | - | 09 His tRNA
|

5168295 | 5168379 | + | 85 | 148654188 | RoseRS_R0054 | - | 15 Leu tRNA
|

5254500 | 5254575 | + | 76 | 148654188 | RoseRS_R0055 | - | 11 Arg tRNA
|

5507986 | 5508059 | + | 74 | 148654188 | RoseRS_R0056 | - | 05 Gln tRNA
|

5722495 | 5722571 | + | 77 | 148654188 | RoseRS_R0057 | - | 04 Glu tRNA
|