Материалы:NC 009439

LOCUS NC_009439 5072807 bp DNA circular BCT 25-JUN-2007 DEFINITION Pseudomonas mendocina ymp, complete genome. ACCESSION NC_009439 VERSION NC_009439.1 GI:146305042 KEYWORDS . SOURCE Pseudomonas mendocina ymp ORGANISM Pseudomonas mendocina ymp Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 5072807) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hersman,L., Dubois,J., Maurice,P. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Pseudomonas mendocina ymp JOURNAL Unpublished REFERENCE 2 (bases 1 to 5072807) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5072807) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hersman,L., Dubois,J., Maurice,P. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (17-APR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000680. URL -- http://www.jgi.doe.gov JGI Project ID: 4002766 Source DNA and bacteria available from Larry Hersman (hersman@lanl.gov) Contacts: Larry Hersman (hersman@lanl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

237323 | 237399 | - | 77 | 146305042 | Pmen_R0001 | - | 11 Arg tRNA
|

711349 | 711435 | - | 87 | 146305042 | Pmen_R0002 | - | 15 Leu tRNA
|

711518 | 711604 | - | 87 | 146305042 | Pmen_R0003 | - | 15 Leu tRNA
|

863123 | 863198 | + | 76 | 146305042 | Pmen_R0004 | - | 07 Asn tRNA
|

863208 | 863284 | + | 77 | 146305042 | Pmen_R0005 | - | 03 Pro tRNA
|

863291 | 863366 | + | 76 | 146305042 | Pmen_R0006 | - | 10 Lys tRNA
|

1031264 | 1031557 | + | 294 | 146305042 | Pmen_R0007 | - | bacterial RNase P |

1141980 | 1143527 | + | 1548 | 146305042 | Pmen_R0008 | - | 16S ribosomal RNA |

1143601 | 1143677 | + | 77 | 146305042 | Pmen_R0009 | - | 14 Ile tRNA
|

1143700 | 1143775 | + | 76 | 146305042 | Pmen_R0010 | - | 02 Ala tRNA
|

1144029 | 1146931 | + | 2903 | 146305042 | Pmen_R0011 | - | 23S ribosomal RNA |

1147079 | 1147198 | + | 120 | 146305042 | Pmen_R0012 | - | 5S ribosomal RNA |

1180764 | 1180840 | + | 77 | 146305042 | Pmen_R0013 | - | 16 Met tRNA
|

1193458 | 1193532 | - | 75 | 146305042 | Pmen_R0014 | - | 05 Gln tRNA
|

1193589 | 1193663 | - | 75 | 146305042 | Pmen_R0015 | - | 05 Gln tRNA
|

1340826 | 1341179 | - | 354 | 146305042 | Pmen_R0016 | - | tmRNA |

1349585 | 1349657 | - | 73 | 146305042 | Pmen_R0017 | - | Xaa tRNA |

1349656 | 1349728 | - | 73 | 146305042 | Pmen_R0018 | - | Xaa tRNA |

1440964 | 1441039 | + | 76 | 146305042 | Pmen_R0019 | - | 10 Lys tRNA
|

1474256 | 1474331 | + | 76 | 146305042 | Pmen_R0020 | - | 13 Val tRNA
|

1474347 | 1474423 | + | 77 | 146305042 | Pmen_R0021 | - | 06 Asp tRNA
|

1515345 | 1515418 | - | 74 | 146305042 | Pmen_R0022 | - | 01 Gly tRNA
|

1827719 | 1827808 | + | 90 | 146305042 | Pmen_R0023 | - | 08 Ser tRNA
|

1887040 | 1887116 | - | 77 | 146305042 | Pmen_R0024 | - | 16 Met tRNA
|

1887232 | 1887308 | - | 77 | 146305042 | Pmen_R0025 | - | 16 Met tRNA
|

1919791 | 1919867 | - | 77 | 146305042 | Pmen_R0026 | - | 03 Pro tRNA
|

2072254 | 2072329 | - | 76 | 146305042 | Pmen_R0027 | - | 07 Asn tRNA
|

2107158 | 2107233 | + | 76 | 146305042 | Pmen_R0028 | - | 04 Glu tRNA
|

2107249 | 2107324 | + | 76 | 146305042 | Pmen_R0029 | - | 01 Gly tRNA
|

2107370 | 2107445 | + | 76 | 146305042 | Pmen_R0030 | - | 04 Glu tRNA
|

2107460 | 2107535 | + | 76 | 146305042 | Pmen_R0031 | - | 01 Gly tRNA
|

2175065 | 2175141 | + | 77 | 146305042 | Pmen_R0032 | - | 13 Val tRNA
|

2182775 | 2182851 | + | 77 | 146305042 | Pmen_R0033 | - | 03 Pro tRNA
|

2193257 | 2194804 | + | 1548 | 146305042 | Pmen_R0034 | - | 16S ribosomal RNA |

2194878 | 2194954 | + | 77 | 146305042 | Pmen_R0035 | - | 14 Ile tRNA
|

2194977 | 2195052 | + | 76 | 146305042 | Pmen_R0036 | - | 02 Ala tRNA
|

2195306 | 2198208 | + | 2903 | 146305042 | Pmen_R0037 | - | 23S ribosomal RNA |

2198356 | 2198475 | + | 120 | 146305042 | Pmen_R0038 | - | 5S ribosomal RNA |

2264335 | 2264411 | + | 77 | 146305042 | Pmen_R0039 | - | 11 Arg tRNA
|

2264450 | 2264525 | + | 76 | 146305042 | Pmen_R0040 | - | 09 His tRNA
|

2264581 | 2264665 | + | 85 | 146305042 | Pmen_R0041 | - | 15 Leu tRNA
|

2338212 | 2338301 | + | 90 | 146305042 | Pmen_R0042 | - | 08 Ser tRNA
|

2620607 | 2620693 | - | 87 | 146305042 | Pmen_R0043 | - | 15 Leu tRNA
|

2620814 | 2620887 | - | 74 | 146305042 | Pmen_R0044 | - | 19 Cys tRNA
|

2620926 | 2621001 | - | 76 | 146305042 | Pmen_R0045 | - | 01 Gly tRNA
|

2624297 | 2624384 | - | 88 | 146305042 | Pmen_R0046 | - | 08 Ser tRNA
|

2905983 | 2906100 | - | 118 | 146305042 | Pmen_R0047 | - | SRP RNA; RNA component of signal recognition particle |

2998829 | 2998904 | - | 76 | 146305042 | Pmen_R0048 | - | 04 Glu tRNA
|

2998953 | 2999028 | - | 76 | 146305042 | Pmen_R0049 | - | 02 Ala tRNA
|

2999076 | 2999151 | - | 76 | 146305042 | Pmen_R0050 | - | 04 Glu tRNA
|

2999200 | 2999275 | - | 76 | 146305042 | Pmen_R0051 | - | 02 Ala tRNA
|

2999325 | 2999400 | - | 76 | 146305042 | Pmen_R0052 | - | 04 Glu tRNA
|

2999461 | 2999536 | - | 76 | 146305042 | Pmen_R0053 | - | 02 Ala tRNA
|

3182441 | 3182515 | - | 75 | 146305042 | Pmen_R0054 | - | 11 Arg tRNA
|

3209444 | 3209520 | - | 77 | 146305042 | Pmen_R0055 | - | 11 Arg tRNA
|

3209591 | 3209667 | - | 77 | 146305042 | Pmen_R0056 | - | 11 Arg tRNA
|

3209712 | 3209788 | - | 77 | 146305042 | Pmen_R0057 | - | 11 Arg tRNA
|

3209860 | 3209950 | - | 91 | 146305042 | Pmen_R0058 | - | 08 Ser tRNA
|

3276658 | 3276734 | - | 77 | 146305042 | Pmen_R0059 | - | 06 Asp tRNA
|

3276835 | 3276911 | - | 77 | 146305042 | Pmen_R0060 | - | 06 Asp tRNA
|

3276944 | 3277019 | - | 76 | 146305042 | Pmen_R0061 | - | 13 Val tRNA
|

3523269 | 3523344 | - | 76 | 146305042 | Pmen_R0062 | - | 12 Thr tRNA
|

3882267 | 3882351 | + | 85 | 146305042 | Pmen_R0063 | - | 15 Leu tRNA
|

3984674 | 3984750 | - | 77 | 146305042 | Pmen_R0064 | - | 16 Met tRNA
|

3984848 | 3984933 | - | 86 | 146305042 | Pmen_R0065 | - | 15 Leu tRNA
|

4303533 | 4303608 | - | 76 | 146305042 | Pmen_R0066 | - | 20 Trp tRNA
|

4304940 | 4305015 | - | 76 | 146305042 | Pmen_R0067 | - | 12 Thr tRNA
|

4305042 | 4305115 | - | 74 | 146305042 | Pmen_R0068 | - | 01 Gly tRNA
|

4305140 | 4305224 | - | 85 | 146305042 | Pmen_R0069 | - | 18 Tyr tRNA
|

4308086 | 4308200 | - | 115 | 146305042 | Pmen_R0070 | - | 5S ribosomal RNA |

4308352 | 4311256 | - | 2905 | 146305042 | Pmen_R0071 | - | 23S ribosomal RNA |

4311508 | 4311583 | - | 76 | 146305042 | Pmen_R0072 | - | 02 Ala tRNA
|

4311606 | 4311682 | - | 77 | 146305042 | Pmen_R0073 | - | 14 Ile tRNA
|

4311767 | 4313303 | - | 1537 | 146305042 | Pmen_R0074 | - | 16S ribosomal RNA |

4410691 | 4410767 | + | 77 | 146305042 | Pmen_R0075 | - | 16 Met tRNA
|

4664813 | 4664888 | + | 76 | 146305042 | Pmen_R0076 | - | 17 Phe tRNA
|

4677750 | 4677825 | + | 76 | 146305042 | Pmen_R0077 | - | 12 Thr tRNA
|

4849314 | 4849428 | - | 115 | 146305042 | Pmen_R0078 | - | 5S ribosomal RNA |

4849579 | 4852483 | - | 2905 | 146305042 | Pmen_R0079 | - | 23S ribosomal RNA |

4852735 | 4852810 | - | 76 | 146305042 | Pmen_R0080 | - | 02 Ala tRNA
|

4852833 | 4852909 | - | 77 | 146305042 | Pmen_R0081 | - | 14 Ile tRNA
|

4852994 | 4854530 | - | 1537 | 146305042 | Pmen_R0082 | - | 16S ribosomal RNA |