Материалы:NC 009513

LOCUS NC_009513 1999618 bp DNA circular BCT 14-AUG-2007 DEFINITION Lactobacillus reuteri F275, complete genome. ACCESSION NC_009513 VERSION NC_009513.1 GI:148543243 KEYWORDS . SOURCE Lactobacillus reuteri F275 ORGANISM Lactobacillus reuteri F275 Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. REFERENCE 1 (bases 1 to 1999618) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Walter,J., Heng,N.C.K., Tannock,G.W. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Lactobacillus reuteri DSM 20016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1999618) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-JUN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1999618) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Goltsman,E., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Walter,J., Heng,N.C.K., Tannock,G.W. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (17-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000705. URL -- http://www.jgi.doe.gov JGI Project ID: 4000135 Source DNA available from Gerald Tannock (gerald.tannock@stonebow.otago.ac.nz) Bacteria available from DSMZ: DSM 20016 Contacts: Gerald Tannock (gerald.tannock@stonebow.otago.ac.nz) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

18213 | 18288 | - | 76 | 148543243 | Lreu_R0001 | - | 10 Lys tRNA
|

20774 | 20849 | - | 76 | 148543243 | Lreu_R0002 | - | 10 Lys tRNA
|

177719 | 179305 | + | 1587 | 148543243 | Lreu_R0003 | - | 16S ribosomal RNA |

179499 | 182423 | + | 2925 | 148543243 | Lreu_R0004 | - | 23S ribosomal RNA |

182502 | 182620 | + | 119 | 148543243 | Lreu_R0005 | - | 5S ribosomal RNA |

182702 | 182774 | + | 73 | 148543243 | Lreu_R0006 | - | 12 Thr tRNA
|

204045 | 204119 | + | 75 | 148543243 | Lreu_R0007 | - | 09 His tRNA
|

233600 | 233673 | + | 74 | 148543243 | Lreu_R0008 | - | 12 Thr tRNA
|

312384 | 313970 | + | 1587 | 148543243 | Lreu_R0009 | - | 16S ribosomal RNA |

314164 | 317088 | + | 2925 | 148543243 | Lreu_R0010 | - | 23S ribosomal RNA |

317167 | 317286 | + | 120 | 148543243 | Lreu_R0011 | - | 5S ribosomal RNA |

317289 | 317361 | + | 73 | 148543243 | Lreu_R0012 | - | 07 Asn tRNA
|

317408 | 317480 | + | 73 | 148543243 | Lreu_R0013 | - | 12 Thr tRNA
|

320661 | 320733 | + | 73 | 148543243 | Lreu_R0014 | - | 07 Asn tRNA
|

324334 | 324416 | + | 83 | 148543243 | Lreu_R0015 | - | 18 Tyr tRNA
|

324427 | 324498 | + | 72 | 148543243 | Lreu_R0016 | - | 05 Gln tRNA
|

335218 | 335306 | + | 89 | 148543243 | Lreu_R0017 | - | 15 Leu tRNA
|

372805 | 372894 | + | 90 | 148543243 | Lreu_R0018 | - | SRP RNA; RNA component of signal recognition particle |

469226 | 469596 | + | 371 | 148543243 | Lreu_R0019 | - | tmRNA |

485359 | 485431 | + | 73 | 148543243 | Lreu_R0020 | - | 05 Gln tRNA
|

487534 | 487606 | + | 73 | 148543243 | Lreu_R0021 | - | 04 Glu tRNA
|

624373 | 625959 | + | 1587 | 148543243 | Lreu_R0022 | - | 16S ribosomal RNA |

626044 | 626118 | + | 75 | 148543243 | Lreu_R0023 | - | 14 Ile tRNA
|

626122 | 626194 | + | 73 | 148543243 | Lreu_R0024 | - | 02 Ala tRNA
|

626353 | 629277 | + | 2925 | 148543243 | Lreu_R0025 | - | 23S ribosomal RNA |

629355 | 629474 | + | 120 | 148543243 | Lreu_R0026 | - | 5S ribosomal RNA |

629476 | 629548 | + | 73 | 148543243 | Lreu_R0027 | - | 13 Val tRNA
|

629567 | 629639 | + | 73 | 148543243 | Lreu_R0028 | - | 10 Lys tRNA
|

629683 | 629755 | + | 73 | 148543243 | Lreu_R0029 | - | 12 Thr tRNA
|

629765 | 629836 | + | 72 | 148543243 | Lreu_R0030 | - | 01 Gly tRNA
|

629853 | 629938 | + | 86 | 148543243 | Lreu_R0031 | - | 15 Leu tRNA
|

629947 | 630020 | + | 74 | 148543243 | Lreu_R0032 | - | 11 Arg tRNA
|

630026 | 630099 | + | 74 | 148543243 | Lreu_R0033 | - | 03 Pro tRNA
|

630130 | 630203 | + | 74 | 148543243 | Lreu_R0034 | - | 16 Met tRNA
|

630219 | 630295 | + | 77 | 148543243 | Lreu_R0035 | - | 16 Met tRNA
|

630345 | 630432 | + | 88 | 148543243 | Lreu_R0036 | - | 08 Ser tRNA
|

630441 | 630514 | + | 74 | 148543243 | Lreu_R0037 | - | 16 Met tRNA
|

630519 | 630593 | + | 75 | 148543243 | Lreu_R0038 | - | 06 Asp tRNA
|

630603 | 630675 | + | 73 | 148543243 | Lreu_R0039 | - | 17 Phe tRNA
|

630691 | 630761 | + | 71 | 148543243 | Lreu_R0040 | - | 01 Gly tRNA
|

630771 | 630845 | + | 75 | 148543243 | Lreu_R0041 | - | 14 Ile tRNA
|

630848 | 630935 | + | 88 | 148543243 | Lreu_R0042 | - | 08 Ser tRNA
|

630940 | 631011 | + | 72 | 148543243 | Lreu_R0043 | - | 04 Glu tRNA
|

631022 | 631095 | + | 74 | 148543243 | Lreu_R0044 | - | 16 Met tRNA
|

631100 | 631174 | + | 75 | 148543243 | Lreu_R0045 | - | 06 Asp tRNA
|

639554 | 641140 | + | 1587 | 148543243 | Lreu_R0046 | - | 16S ribosomal RNA |

641225 | 641299 | + | 75 | 148543243 | Lreu_R0047 | - | 14 Ile tRNA
|

641303 | 641375 | + | 73 | 148543243 | Lreu_R0048 | - | 02 Ala tRNA
|

641534 | 644458 | + | 2925 | 148543243 | Lreu_R0049 | - | 23S ribosomal RNA |

644537 | 644656 | + | 120 | 148543243 | Lreu_R0050 | - | 5S ribosomal RNA |

741822 | 741909 | - | 88 | 148543243 | Lreu_R0051 | - | 08 Ser tRNA
|

1030554 | 1030625 | + | 72 | 148543243 | Lreu_R0052 | - | 11 Arg tRNA
|

1035974 | 1036045 | - | 72 | 148543243 | Lreu_R0053 | - | 05 Gln tRNA
|

1036085 | 1036157 | - | 73 | 148543243 | Lreu_R0054 | - | 13 Val tRNA
|

1036163 | 1036234 | - | 72 | 148543243 | Lreu_R0055 | - | 04 Glu tRNA
|

1036252 | 1036322 | - | 71 | 148543243 | Lreu_R0056 | - | 01 Gly tRNA
|

1036507 | 1036580 | - | 74 | 148543243 | Lreu_R0057 | - | 03 Pro tRNA
|

1036584 | 1036672 | - | 89 | 148543243 | Lreu_R0058 | - | 15 Leu tRNA
|

1036689 | 1036760 | - | 72 | 148543243 | Lreu_R0059 | - | 01 Gly tRNA
|

1036766 | 1036837 | - | 72 | 148543243 | Lreu_R0060 | - | 04 Glu tRNA
|

1047022 | 1047095 | + | 74 | 148543243 | Lreu_R0061 | - | 03 Pro tRNA
|

1074436 | 1074556 | - | 121 | 148543243 | Lreu_R0062 | - | 5S ribosomal RNA |

1074635 | 1077558 | - | 2924 | 148543243 | Lreu_R0063 | - | 23S ribosomal RNA |

1077752 | 1079338 | - | 1587 | 148543243 | Lreu_R0064 | - | 16S ribosomal RNA |

1244027 | 1244100 | + | 74 | 148543243 | Lreu_R0065 | - | 11 Arg tRNA
|

1323697 | 1323767 | - | 71 | 148543243 | Lreu_R0066 | - | 01 Gly tRNA
|

1329501 | 1329587 | - | 87 | 148543243 | Lreu_R0067 | - | 15 Leu tRNA
|

1369035 | 1369119 | - | 85 | 148543243 | Lreu_R0068 | - | 15 Leu tRNA
|

1369134 | 1369204 | - | 71 | 148543243 | Lreu_R0069 | - | 19 Cys tRNA
|

1369241 | 1369315 | - | 75 | 148543243 | Lreu_R0070 | - | 09 His tRNA
|

1369333 | 1369403 | - | 71 | 148543243 | Lreu_R0071 | - | 20 Trp tRNA
|

1369410 | 1369492 | - | 83 | 148543243 | Lreu_R0072 | - | 18 Tyr tRNA
|

1369498 | 1369570 | - | 73 | 148543243 | Lreu_R0073 | - | 17 Phe tRNA
|

1369607 | 1369679 | - | 73 | 148543243 | Lreu_R0074 | - | 13 Val tRNA
|

1369685 | 1369756 | - | 72 | 148543243 | Lreu_R0075 | - | 04 Glu tRNA
|

1369764 | 1369855 | - | 92 | 148543243 | Lreu_R0076 | - | 08 Ser tRNA
|

1369902 | 1370022 | - | 121 | 148543243 | Lreu_R0077 | - | 5S ribosomal RNA |

1370101 | 1373025 | - | 2925 | 148543243 | Lreu_R0078 | - | 23S ribosomal RNA |

1373183 | 1373255 | - | 73 | 148543243 | Lreu_R0079 | - | 02 Ala tRNA
|

1373259 | 1373333 | - | 75 | 148543243 | Lreu_R0080 | - | 14 Ile tRNA
|

1373419 | 1375005 | - | 1587 | 148543243 | Lreu_R0081 | - | 16S ribosomal RNA |

1448882 | 1448954 | - | 73 | 148543243 | Lreu_R0082 | - | 11 Arg tRNA
|

1551234 | 1551307 | - | 74 | 148543243 | Lreu_R0083 | - | 03 Pro tRNA
|

1551350 | 1551426 | - | 77 | 148543243 | Lreu_R0084 | - | 11 Arg tRNA
|

1551432 | 1551503 | - | 72 | 148543243 | Lreu_R0085 | - | 01 Gly tRNA
|

1551594 | 1551676 | - | 83 | 148543243 | Lreu_R0086 | - | 15 Leu tRNA
|

1551684 | 1551756 | - | 73 | 148543243 | Lreu_R0087 | - | 13 Val tRNA
|

1573126 | 1573200 | - | 75 | 148543243 | Lreu_R0088 | - | 06 Asp tRNA
|