Материалы:NC 009832

LOCUS NC_009832 5448853 bp DNA circular BCT 20-SEP-2007 DEFINITION Serratia proteamaculans 568, complete genome. ACCESSION NC_009832 VERSION NC_009832.1 GI:157368249 KEYWORDS . SOURCE Serratia proteamaculans 568 ORGANISM Serratia proteamaculans 568 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia. REFERENCE 1 (bases 1 to 5448853) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Taghavi,S., Newman,L., Vangronsveld,J., van der Lelie,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Serratia proteamaculans 568 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5448853) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-SEP-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5448853) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Taghavi,S., Newman,L., Vangronsveld,J., van der Lelie,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (12-SEP-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000826. URL -- http://www.jgi.doe.gov JGI Project ID: 4002719 Source DNA and bacteria available from Daniel van der Lelie (vdlelied@bnl.gov) Contacts: Daniel van der Lelie (vdlelied@bnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

116207 | 116297 | + | 91 | 157368249 | Spro_R0001 | - | Sec tRNA |

144755 | 144831 | + | 77 | 157368249 | Spro_R0002 | - | 03 Pro tRNA
|

196987 | 197063 | + | 77 | 157368249 | Spro_R0003 | - | 11 Arg tRNA
|

197123 | 197198 | + | 76 | 157368249 | Spro_R0004 | - | 09 His tRNA
|

197242 | 197328 | + | 87 | 157368249 | Spro_R0005 | - | 15 Leu tRNA
|

197405 | 197481 | + | 77 | 157368249 | Spro_R0006 | - | 03 Pro tRNA
|

298569 | 300103 | + | 1535 | 157368249 | Spro_R0007 | - | 16S ribosomal RNA |

300248 | 300323 | + | 76 | 157368249 | Spro_R0008 | - | 04 Glu tRNA
|

300559 | 303468 | + | 2910 | 157368249 | Spro_R0009 | - | 23S ribosomal RNA |

303567 | 303682 | + | 116 | 157368249 | Spro_R0010 | - | 5S ribosomal RNA |

307568 | 307643 | + | 76 | 157368249 | Spro_R0011 | - | 12 Thr tRNA
|

307668 | 307752 | + | 85 | 157368249 | Spro_R0012 | - | 18 Tyr tRNA
|

307952 | 308026 | + | 75 | 157368249 | Spro_R0013 | - | 01 Gly tRNA
|

308033 | 308108 | + | 76 | 157368249 | Spro_R0014 | - | 12 Thr tRNA
|

336532 | 338066 | + | 1535 | 157368249 | Spro_R0015 | - | 16S ribosomal RNA |

338141 | 338217 | + | 77 | 157368249 | Spro_R0016 | - | 14 Ile tRNA
|

338255 | 338330 | + | 76 | 157368249 | Spro_R0017 | - | 02 Ala tRNA
|

338536 | 341444 | + | 2909 | 157368249 | Spro_R0018 | - | 23S ribosomal RNA |

341546 | 341661 | + | 116 | 157368249 | Spro_R0019 | - | 5S ribosomal RNA |

355873 | 355948 | - | 76 | 157368249 | Spro_R0020 | - | 17 Phe tRNA
|

451284 | 451359 | - | 76 | 157368249 | Spro_R0021 | - | 17 Phe tRNA
|

474644 | 474719 | + | 76 | 157368249 | Spro_R0022 | - | 01 Gly tRNA
|

474784 | 474859 | + | 76 | 157368249 | Spro_R0023 | - | 01 Gly tRNA
|

474915 | 474990 | + | 76 | 157368249 | Spro_R0024 | - | 01 Gly tRNA
|

537028 | 537114 | + | 87 | 157368249 | Spro_R0025 | - | 15 Leu tRNA
|

537175 | 537251 | + | 77 | 157368249 | Spro_R0026 | - | 16 Met tRNA
|

627171 | 627255 | + | 85 | 157368249 | Spro_R0027 | - | 15 Leu tRNA
|

711848 | 711934 | - | 87 | 157368249 | Spro_R0028 | - | 15 Leu tRNA
|

711978 | 712064 | - | 87 | 157368249 | Spro_R0029 | - | 15 Leu tRNA
|

712099 | 712185 | - | 87 | 157368249 | Spro_R0030 | - | 15 Leu tRNA
|

942212 | 942304 | + | 93 | 157368249 | Spro_R0031 | - | 08 Ser tRNA
|

942308 | 942384 | + | 77 | 157368249 | Spro_R0032 | - | 11 Arg tRNA
|

942446 | 942522 | + | 77 | 157368249 | Spro_R0033 | - | 11 Arg tRNA
|

942573 | 942649 | + | 77 | 157368249 | Spro_R0034 | - | 11 Arg tRNA
|

983450 | 984984 | + | 1535 | 157368249 | Spro_R0035 | - | 16S ribosomal RNA |

985129 | 985204 | + | 76 | 157368249 | Spro_R0036 | - | 04 Glu tRNA
|

985440 | 988349 | + | 2910 | 157368249 | Spro_R0037 | - | 23S ribosomal RNA |

988448 | 988563 | + | 116 | 157368249 | Spro_R0038 | - | 5S ribosomal RNA |

988658 | 988734 | + | 77 | 157368249 | Spro_R0039 | - | 06 Asp tRNA
|

1011798 | 1011874 | + | 77 | 157368249 | Spro_R0040 | - | 06 Asp tRNA
|

1225835 | 1225951 | + | 117 | 157368249 | Spro_R0041 | - | SRP RNA; RNA component of signal recognition particle |

1286581 | 1286657 | + | 77 | 157368249 | Spro_R0042 | - | 11 Arg tRNA
|

1339316 | 1339390 | - | 75 | 157368249 | Spro_R0043 | - | 05 Gln tRNA
|

1339410 | 1339486 | - | 77 | 157368249 | Spro_R0044 | - | 16 Met tRNA
|

1339525 | 1339599 | - | 75 | 157368249 | Spro_R0045 | - | 05 Gln tRNA
|

1339647 | 1339721 | - | 75 | 157368249 | Spro_R0046 | - | 05 Gln tRNA
|

1339751 | 1339835 | - | 85 | 157368249 | Spro_R0047 | - | 15 Leu tRNA
|

1339846 | 1339922 | - | 77 | 157368249 | Spro_R0048 | - | 16 Met tRNA
|

1408541 | 1408616 | + | 76 | 157368249 | Spro_R0049 | - | 10 Lys tRNA
|

1408649 | 1408724 | + | 76 | 157368249 | Spro_R0050 | - | 13 Val tRNA
|

1408732 | 1408807 | + | 76 | 157368249 | Spro_R0051 | - | 10 Lys tRNA
|

1408878 | 1408953 | + | 76 | 157368249 | Spro_R0052 | - | 10 Lys tRNA
|

1409007 | 1409082 | + | 76 | 157368249 | Spro_R0053 | - | 10 Lys tRNA
|

1946172 | 1946259 | + | 88 | 157368249 | Spro_R0054 | - | 08 Ser tRNA
|

2034897 | 2034972 | + | 76 | 157368249 | Spro_R0055 | - | 01 Gly tRNA
|

2035030 | 2035103 | + | 74 | 157368249 | Spro_R0056 | - | 19 Cys tRNA
|

2035114 | 2035199 | + | 86 | 157368249 | Spro_R0057 | - | 15 Leu tRNA
|

2050388 | 2050482 | + | 95 | 157368249 | Spro_R0058 | - | Xaa tRNA |

2115712 | 2115801 | - | 90 | 157368249 | Spro_R0059 | - | 08 Ser tRNA
|

2116023 | 2116112 | - | 90 | 157368249 | Spro_R0060 | - | 08 Ser tRNA
|

2390331 | 2390407 | - | 77 | 157368249 | Spro_R0061 | - | 13 Val tRNA
|

2390429 | 2390505 | - | 77 | 157368249 | Spro_R0062 | - | 13 Val tRNA
|

2390527 | 2390603 | - | 77 | 157368249 | Spro_R0063 | - | 13 Val tRNA
|

2990610 | 2990694 | + | 85 | 157368249 | Spro_R0064 | - | 18 Tyr tRNA
|

2990791 | 2990875 | + | 85 | 157368249 | Spro_R0065 | - | 18 Tyr tRNA
|

3421738 | 3421827 | - | 90 | 157368249 | Spro_R0066 | - | 08 Ser tRNA
|

3422811 | 3422886 | + | 76 | 157368249 | Spro_R0067 | - | 07 Asn tRNA
|

3447048 | 3447123 | + | 76 | 157368249 | Spro_R0068 | - | 07 Asn tRNA
|

3494641 | 3494716 | + | 76 | 157368249 | Spro_R0069 | - | 07 Asn tRNA
|

3528610 | 3528685 | + | 76 | 157368249 | Spro_R0070 | - | 07 Asn tRNA
|

3593930 | 3594006 | + | 77 | 157368249 | Spro_R0071 | - | 03 Pro tRNA
|

3594665 | 3594740 | - | 76 | 157368249 | Spro_R0072 | - | 12 Thr tRNA
|

3594747 | 3594834 | - | 88 | 157368249 | Spro_R0073 | - | 08 Ser tRNA
|

3752729 | 3752803 | + | 75 | 157368249 | Spro_R0074 | - | 11 Arg tRNA
|

3779490 | 3779565 | - | 76 | 157368249 | Spro_R0075 | - | 02 Ala tRNA
|

3779626 | 3779701 | - | 76 | 157368249 | Spro_R0076 | - | 02 Ala tRNA
|

3781664 | 3781739 | + | 76 | 157368249 | Spro_R0077 | - | 13 Val tRNA
|

3781780 | 3781855 | + | 76 | 157368249 | Spro_R0078 | - | 13 Val tRNA
|

3781895 | 3781970 | + | 76 | 157368249 | Spro_R0079 | - | 13 Val tRNA
|

3781978 | 3782053 | + | 76 | 157368249 | Spro_R0080 | - | 10 Lys tRNA
|

4081920 | 4082299 | + | 380 | 157368249 | Spro_R0081 | - | tmRNA |

4143910 | 4144025 | - | 116 | 157368249 | Spro_R0082 | - | 5S ribosomal RNA |

4144123 | 4147031 | - | 2909 | 157368249 | Spro_R0083 | - | 23S ribosomal RNA |

4147237 | 4147312 | - | 76 | 157368249 | Spro_R0084 | - | 02 Ala tRNA
|

4147350 | 4147426 | - | 77 | 157368249 | Spro_R0085 | - | 14 Ile tRNA
|

4147501 | 4149035 | - | 1535 | 157368249 | Spro_R0086 | - | 16S ribosomal RNA |

4210718 | 4210794 | + | 77 | 157368249 | Spro_R0087 | - | 16 Met tRNA
|

4210862 | 4210938 | + | 77 | 157368249 | Spro_R0088 | - | 16 Met tRNA
|

4211003 | 4211079 | + | 77 | 157368249 | Spro_R0089 | - | 16 Met tRNA
|

4307337 | 4307410 | - | 74 | 157368249 | Spro_R0090 | - | 01 Gly tRNA
|

4486593 | 4486668 | + | 76 | 157368249 | Spro_R0091 | - | 17 Phe tRNA
|

4769981 | 4770057 | + | 77 | 157368249 | Spro_R0092 | - | 16 Met tRNA
|

4802652 | 4802954 | - | 303 | 157368249 | Spro_R0093 | - | RNA component of RNaseP |

4993782 | 4993857 | - | 76 | 157368249 | Spro_R0094 | - | 12 Thr tRNA
|

4993871 | 4993986 | - | 116 | 157368249 | Spro_R0095 | - | 5S ribosomal RNA |

4994085 | 4996993 | - | 2909 | 157368249 | Spro_R0096 | - | 23S ribosomal RNA |

4997229 | 4997304 | - | 76 | 157368249 | Spro_R0097 | - | 04 Glu tRNA
|

4997449 | 4998983 | - | 1535 | 157368249 | Spro_R0098 | - | 16S ribosomal RNA |

5276550 | 5276625 | - | 76 | 157368249 | Spro_R0099 | - | 20 Trp tRNA
|

5276679 | 5276755 | - | 77 | 157368249 | Spro_R0100 | - | 06 Asp tRNA
|

5276850 | 5276965 | - | 116 | 157368249 | Spro_R0101 | - | 5S ribosomal RNA |

5277064 | 5279973 | - | 2910 | 157368249 | Spro_R0102 | - | 23S ribosomal RNA |

5280167 | 5280242 | - | 76 | 157368249 | Spro_R0103 | - | 02 Ala tRNA
|

5280367 | 5280443 | - | 77 | 157368249 | Spro_R0104 | - | 14 Ile tRNA
|

5280547 | 5282081 | - | 1535 | 157368249 | Spro_R0105 | - | 16S ribosomal RNA |

5424656 | 5424771 | - | 116 | 157368249 | Spro_R0106 | - | 5S ribosomal RNA |

5424869 | 5427778 | - | 2910 | 157368249 | Spro_R0107 | - | 23S ribosomal RNA |

5428014 | 5428089 | - | 76 | 157368249 | Spro_R0108 | - | 04 Glu tRNA
|

5428234 | 5429768 | - | 1535 | 157368249 | Spro_R0109 | - | 16S ribosomal RNA |