Материалы:NC 009380

LOCUS NC_009380 5183331 bp DNA circular BCT 14-AUG-2007 DEFINITION Salinispora tropica CNB-440, complete genome. ACCESSION NC_009380 VERSION NC_009380.1 GI:145592566 KEYWORDS . SOURCE Salinispora tropica CNB-440 ORGANISM Salinispora tropica CNB-440 Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micromonosporineae; Micromonosporaceae; Salinispora. REFERENCE 1 (bases 1 to 5183331) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Sun,H., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Jensen,P., Moore,B., Udwary,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Salinispora tropica CNB-440 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5183331) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-APR-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5183331) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Sun,H., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Jensen,P., Moore,B., Udwary,D. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (10-APR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000667. URL -- http://www.jgi.doe.gov JGI Project ID: 4001585 Source DNA and bacteria available from Paul Jensen (pjensen@ucsd.edu) Contacts: Paul Jensen (pjensen@ucsd.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

13654 | 13730 | + | 77 | 145592566 | Strop_R0001 | - | 14 Ile tRNA
|

14629 | 14704 | + | 76 | 145592566 | Strop_R0002 | - | 02 Ala tRNA
|

48840 | 48925 | - | 86 | 145592566 | Strop_R0003 | - | 15 Leu tRNA
|

67524 | 67597 | + | 74 | 145592566 | Strop_R0004 | - | 01 Gly tRNA
|

202576 | 204103 | + | 1528 | 145592566 | Strop_R0005 | - | 16S ribosomal RNA |

204506 | 207613 | + | 3108 | 145592566 | Strop_R0006 | - | 23S ribosomal RNA |

207695 | 207823 | + | 129 | 145592566 | Strop_R0007 | - | 5S ribosomal RNA |

234086 | 234172 | + | 87 | 145592566 | Strop_R0008 | - | 08 Ser tRNA
|

241999 | 242083 | - | 85 | 145592566 | Strop_R0009 | - | 08 Ser tRNA
|

470769 | 470852 | + | 84 | 145592566 | Strop_R0010 | - | 18 Tyr tRNA
|

631297 | 631372 | - | 76 | 145592566 | Strop_R0011 | - | 11 Arg tRNA
|

655708 | 655803 | + | 96 | 145592566 | Strop_R0012 | - | Sec tRNA |

830937 | 831013 | + | 77 | 145592566 | Strop_R0013 | - | 02 Ala tRNA
|

875429 | 875500 | + | 72 | 145592566 | Strop_R0014 | - | 05 Gln tRNA
|

1012577 | 1012660 | + | 84 | 145592566 | Strop_R0015 | - | 15 Leu tRNA
|

1103754 | 1104126 | + | 373 | 145592566 | Strop_R0016 | - | tmRNA |

1106829 | 1106904 | + | 76 | 145592566 | Strop_R0017 | - | 02 Ala tRNA
|

1183092 | 1183166 | + | 75 | 145592566 | Strop_R0018 | - | 10 Lys tRNA
|

1260367 | 1260453 | - | 87 | 145592566 | Strop_R0019 | - | 15 Leu tRNA
|

1270726 | 1270801 | + | 76 | 145592566 | Strop_R0020 | - | 09 His tRNA
|

1274262 | 1274337 | + | 76 | 145592566 | Strop_R0021 | - | 10 Lys tRNA
|

1418924 | 1418995 | + | 72 | 145592566 | Strop_R0022 | - | 05 Gln tRNA
|

1419095 | 1419167 | + | 73 | 145592566 | Strop_R0023 | - | 04 Glu tRNA
|

1419332 | 1419404 | + | 73 | 145592566 | Strop_R0024 | - | 04 Glu tRNA
|

1788599 | 1788671 | + | 73 | 145592566 | Strop_R0025 | - | 01 Gly tRNA
|

1788706 | 1788776 | + | 71 | 145592566 | Strop_R0026 | - | 19 Cys tRNA
|

1788789 | 1788863 | + | 75 | 145592566 | Strop_R0027 | - | 13 Val tRNA
|

1789375 | 1789447 | + | 73 | 145592566 | Strop_R0028 | - | 01 Gly tRNA
|

1789486 | 1789557 | + | 72 | 145592566 | Strop_R0029 | - | 13 Val tRNA
|

1822362 | 1822436 | + | 75 | 145592566 | Strop_R0030 | - | 13 Val tRNA
|

2172798 | 2174325 | + | 1528 | 145592566 | Strop_R0031 | - | 16S ribosomal RNA |

2174728 | 2177835 | + | 3108 | 145592566 | Strop_R0032 | - | 23S ribosomal RNA |

2177917 | 2178045 | + | 129 | 145592566 | Strop_R0033 | - | 5S ribosomal RNA |

2206283 | 2206356 | + | 74 | 145592566 | Strop_R0034 | - | 03 Pro tRNA
|

3325222 | 3325305 | - | 84 | 145592566 | Strop_R0035 | - | 15 Leu tRNA
|

3618390 | 3618466 | + | 77 | 145592566 | Strop_R0036 | - | 15 Leu tRNA
|

3847829 | 3848184 | - | 356 | 145592566 | Strop_R0037 | - | RNA component of RNaseP |

3864145 | 3864219 | - | 75 | 145592566 | Strop_R0038 | - | 13 Val tRNA
|

3921289 | 3921365 | - | 77 | 145592566 | Strop_R0039 | - | 16 Met tRNA
|

3925076 | 3925148 | - | 73 | 145592566 | Strop_R0040 | - | 07 Asn tRNA
|

4009222 | 4009350 | - | 129 | 145592566 | Strop_R0041 | - | 5S ribosomal RNA |

4009431 | 4012538 | - | 3108 | 145592566 | Strop_R0042 | - | 23S ribosomal RNA |

4012942 | 4014469 | - | 1528 | 145592566 | Strop_R0043 | - | 16S ribosomal RNA |

4020768 | 4020841 | - | 74 | 145592566 | Strop_R0044 | - | 03 Pro tRNA
|

4021118 | 4021191 | + | 74 | 145592566 | Strop_R0045 | - | 01 Gly tRNA
|

4078954 | 4079026 | + | 73 | 145592566 | Strop_R0046 | - | 11 Arg tRNA
|

4190586 | 4190660 | + | 75 | 145592566 | Strop_R0047 | - | 11 Arg tRNA
|

4269850 | 4269923 | - | 74 | 145592566 | Strop_R0048 | - | 16 Met tRNA
|

4270801 | 4270874 | - | 74 | 145592566 | Strop_R0049 | - | 16 Met tRNA
|

4493369 | 4493441 | - | 73 | 145592566 | Strop_R0050 | - | 20 Trp tRNA
|

4494820 | 4494892 | - | 73 | 145592566 | Strop_R0051 | - | 16 Met tRNA
|

4494917 | 4494989 | - | 73 | 145592566 | Strop_R0052 | - | 12 Thr tRNA
|

4565214 | 4565287 | - | 74 | 145592566 | Strop_R0053 | - | 12 Thr tRNA
|

4687456 | 4687546 | + | 91 | 145592566 | Strop_R0054 | - | 08 Ser tRNA
|

4687582 | 4687657 | + | 76 | 145592566 | Strop_R0055 | - | 11 Arg tRNA
|

4785175 | 4785251 | - | 77 | 145592566 | Strop_R0056 | - | 12 Thr tRNA
|

4936175 | 4936251 | + | 77 | 145592566 | Strop_R0057 | - | 03 Pro tRNA
|

5030668 | 5030741 | - | 74 | 145592566 | Strop_R0058 | - | 17 Phe tRNA
|

5030841 | 5030917 | - | 77 | 145592566 | Strop_R0059 | - | 06 Asp tRNA
|

5030944 | 5031016 | - | 73 | 145592566 | Strop_R0060 | - | 04 Glu tRNA
|

5062286 | 5062372 | - | 87 | 145592566 | Strop_R0061 | - | 08 Ser tRNA
|