Материалы:NC 009437

LOCUS NC_009437 2970275 bp DNA circular BCT 14-AUG-2007 DEFINITION Caldicellulosiruptor saccharolyticus DSM 8903, complete genome. ACCESSION NC_009437 VERSION NC_009437.1 GI:146295085 KEYWORDS . SOURCE Caldicellulosiruptor saccharolyticus DSM 8903 ORGANISM Caldicellulosiruptor saccharolyticus DSM 8903 Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Caldicellulosiruptor. REFERENCE 1 (bases 1 to 2970275) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., van de Werken,H.J.G., Verhaart,M.R.A., VanFossen,A.L., Lewis,D.L., Nichols,J.D., Goorissen,H.P., van Niel,E.W.J., Stams,F.J.M., Willquist,K.U., Ward,D.E., van der Oost,J., Kelly,R.M., Kengen,S.M.W. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Genome sequence of the thermophilic hydrogen-producing bacterium Caldicellulosiruptor saccharolyticus DSM 8903 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2970275) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2970275) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-APR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000679. URL -- http://www.jgi.doe.gov JGI Project ID: 4000186 Source DNA available from Robert M Kelly (rmkelly@eos.ncsu.edu) Bacteria available from DSMZ: DSM 8903 Contacts: Robert M Kelly (rmkelly@eos.ncsu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additinal note: There are an unresolved number of A's at location 913,462. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

284251 | 285806 | + | 1556 | 146295085 | Csac_R0001 | - | 16S ribosomal RNA |

285859 | 285934 | + | 76 | 146295085 | Csac_R0002 | - | 02 Ala tRNA
|

285944 | 286020 | + | 77 | 146295085 | Csac_R0003 | - | 14 Ile tRNA
|

286093 | 289056 | + | 2964 | 146295085 | Csac_R0004 | - | 23S ribosomal RNA |

289124 | 289239 | + | 116 | 146295085 | Csac_R0005 | - | 5S ribosomal RNA |

330732 | 330824 | - | 93 | 146295085 | Csac_R0006 | - | 08 Ser tRNA
|

486454 | 488011 | + | 1558 | 146295085 | Csac_R0007 | - | 16S ribosomal RNA |

488147 | 491112 | + | 2966 | 146295085 | Csac_R0008 | - | 23S ribosomal RNA |

491189 | 491304 | + | 116 | 146295085 | Csac_R0009 | - | 5S ribosomal RNA |

517256 | 517343 | + | 88 | 146295085 | Csac_R0010 | - | 15 Leu tRNA
|

605388 | 605464 | + | 77 | 146295085 | Csac_R0011 | - | 03 Pro tRNA
|

605560 | 605644 | + | 85 | 146295085 | Csac_R0012 | - | 18 Tyr tRNA
|

605662 | 605737 | + | 76 | 146295085 | Csac_R0013 | - | 12 Thr tRNA
|

605764 | 605839 | + | 76 | 146295085 | Csac_R0014 | - | 10 Lys tRNA
|

605848 | 605924 | + | 77 | 146295085 | Csac_R0015 | - | 11 Arg tRNA
|

850051 | 850137 | + | 87 | 146295085 | Csac_R0016 | - | SRP RNA; RNA component of signal recognition particle |

861334 | 861425 | + | 92 | 146295085 | Csac_R0017 | - | 08 Ser tRNA
|

1013590 | 1013667 | - | 78 | 146295085 | Csac_R0018 | - | 03 Pro tRNA
|

1020428 | 1020503 | + | 76 | 146295085 | Csac_R0019 | - | 13 Val tRNA
|

1020512 | 1020588 | + | 77 | 146295085 | Csac_R0020 | - | 06 Asp tRNA
|

1020600 | 1020675 | + | 76 | 146295085 | Csac_R0021 | - | 17 Phe tRNA
|

1020694 | 1020769 | + | 76 | 146295085 | Csac_R0022 | - | 01 Gly tRNA
|

1020792 | 1020866 | + | 75 | 146295085 | Csac_R0023 | - | 19 Cys tRNA
|

1143722 | 1143797 | - | 76 | 146295085 | Csac_R0024 | - | 11 Arg tRNA
|

1244819 | 1245183 | - | 365 | 146295085 | Csac_R0025 | - | tmRNA |

1389177 | 1389269 | - | 93 | 146295085 | Csac_R0026 | - | 08 Ser tRNA
|

1400474 | 1400550 | + | 77 | 146295085 | Csac_R0027 | - | 09 His tRNA
|

1400565 | 1400640 | + | 76 | 146295085 | Csac_R0028 | - | 05 Gln tRNA
|

1405841 | 1405916 | + | 76 | 146295085 | Csac_R0029 | - | 10 Lys tRNA
|

1617865 | 1617941 | - | 77 | 146295085 | Csac_R0030 | - | 11 Arg tRNA
|

1813559 | 1813632 | + | 74 | 146295085 | Csac_R0031 | - | 01 Gly tRNA
|

1891247 | 1891325 | - | 79 | 146295085 | Csac_R0032 | - | 03 Pro tRNA
|

1912700 | 1912776 | - | 77 | 146295085 | Csac_R0033 | - | 13 Val tRNA
|

2241920 | 2241994 | + | 75 | 146295085 | Csac_R0034 | - | 12 Thr tRNA
|

2263873 | 2264171 | - | 299 | 146295085 | Csac_R0035 | - | bacterial RNase P |

2318657 | 2318743 | - | 87 | 146295085 | Csac_R0036 | - | 15 Leu tRNA
|

2323865 | 2323939 | - | 75 | 146295085 | Csac_R0037 | - | 04 Glu tRNA
|

2323969 | 2324045 | - | 77 | 146295085 | Csac_R0038 | - | 16 Met tRNA
|

2324066 | 2324141 | - | 76 | 146295085 | Csac_R0039 | - | 16 Met tRNA
|

2324147 | 2324236 | - | 90 | 146295085 | Csac_R0040 | - | 15 Leu tRNA
|

2324293 | 2324377 | - | 85 | 146295085 | Csac_R0041 | - | 15 Leu tRNA
|

2350660 | 2350736 | - | 77 | 146295085 | Csac_R0042 | - | 12 Thr tRNA
|

2350786 | 2350859 | - | 74 | 146295085 | Csac_R0043 | - | 01 Gly tRNA
|

2353809 | 2353899 | - | 91 | 146295085 | Csac_R0044 | - | 08 Ser tRNA
|

2375147 | 2375262 | - | 116 | 146295085 | Csac_R0045 | - | 5S ribosomal RNA |

2375335 | 2378297 | - | 2963 | 146295085 | Csac_R0046 | - | 23S ribosomal RNA |

2378371 | 2378447 | - | 77 | 146295085 | Csac_R0047 | - | 14 Ile tRNA
|

2378454 | 2378529 | - | 76 | 146295085 | Csac_R0048 | - | 02 Ala tRNA
|

2378593 | 2380149 | - | 1557 | 146295085 | Csac_R0049 | - | 16S ribosomal RNA |

2390093 | 2390168 | - | 76 | 146295085 | Csac_R0050 | - | 04 Glu tRNA
|

2390173 | 2390246 | - | 74 | 146295085 | Csac_R0051 | - | 05 Gln tRNA
|

2742575 | 2742649 | - | 75 | 146295085 | Csac_R0052 | - | 04 Glu tRNA
|

2742673 | 2742748 | - | 76 | 146295085 | Csac_R0053 | - | 10 Lys tRNA
|

2876559 | 2876634 | - | 76 | 146295085 | Csac_R0054 | - | 16 Met tRNA
|

2876644 | 2876718 | - | 75 | 146295085 | Csac_R0055 | - | 07 Asn tRNA
|

2884397 | 2884484 | + | 88 | 146295085 | Csac_R0056 | - | 15 Leu tRNA
|

2884554 | 2884630 | + | 77 | 146295085 | Csac_R0057 | - | 11 Arg tRNA
|

2938708 | 2938783 | + | 76 | 146295085 | Csac_R0058 | - | 20 Trp tRNA
|