Материалы:NC 004129

```
LOCUS NC_004129 7074893 bp DNA circular BCT 13-SEP-2007
DEFINITION Pseudomonas fluorescens Pf-5, complete genome.
ACCESSION NC_004129
VERSION NC_004129.6 GI:70728250
KEYWORDS .
SOURCE Pseudomonas fluorescens Pf-5
ORGANISM Pseudomonas fluorescens Pf-5
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 7074893)
AUTHORS Gross,H., Stockwell,V.O., Henkels,M.D., Nowak-Thompson,B.,
Loper,J.E. and Gerwick,W.H.
TITLE The Genomisotopic Approach: A Systematic Method to Isolate Products
of Orphan Biosynthetic Gene Clusters
JOURNAL Chem. Biol. 14 (1), 53-63 (2007)
PUBMED 17254952
REFERENCE 2 (bases 1 to 7074893)
AUTHORS Paulsen,I.T., Press,C.M., Ravel,J., Kobayashi,D.Y., Myers,G.S.,
Mavrodi,D.V., DeBoy,R.T., Seshadri,R., Ren,Q., Madupu,R.,
Dodson,R.J., Durkin,A.S., Brinkac,L.M., Daugherty,S.C.,
Sullivan,S.A., Rosovitz,M.J., Gwinn,M.L., Zhou,L., Schneider,D.J.,
Cartinhour,S.W., Nelson,W.C., Weidman,J., Watkins,K., Tran,K.,
Khouri,H., Pierson,E.A., Pierson,L.S., Thomashow,L.S. and
Loper,J.E.
TITLE Complete genome sequence of the plant commensal Pseudomonas
fluorescens Pf-5
JOURNAL Nature Biotech 23 (7), 873-878 (2005)
PUBMED 15980861
REMARK Erratum:[Nat Biotechnol. 2006 Apr;24(4):466]
REFERENCE 3 (bases 1 to 7074893)
AUTHORS Anderson,W.J., Hall,B.M., Roessler,C.G., Roberts,S.A., Ingram,W.M.,
Weichel,A., Heroux,A., Montfort,W.R. and Cordes,M.H.
TITLE Discovery of similar natural protein sequences with different folds
using transitive homology relationships
JOURNAL Unpublished
REFERENCE 4 (bases 1 to 7074893)
AUTHORS Paulsen,I.T., Press,C., Ravel,J., Kobayashi,D., Myers,G.S.,
Mavrodi,D., DeBoy,R.T., Seshadri,R., Ren,Q., Madupu,R.,
Dodson,R.J., Durkin,S., Brinkac,L.M., Daugherty,S.C.,
Sullivan,S.A., Rosovitz,M., Gwinn,M.L., Zhou,L., Nelson,W.C.,
Weidman,J., Watkins,K., Tran,K., Khouri,H.M., Pierson,E.,
Pierson,L.III, Thomashow,L. and Loper,J.
TITLE Direct Submission
JOURNAL Submitted (13-MAY-2005) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
REFERENCE 5 (bases 1 to 7074893)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2002) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000076.
On Jul 12, 2005 this sequence version replaced gi:41584502.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

122811 | 124349 | + | 1539 | 70728250 | PFL_0119 | - | 16S ribosomal RNA |

124473 | 124549 | + | 77 | 70728250 | PFL_0120 | - | 14 Ile tRNA
|

124560 | 124635 | + | 76 | 70728250 | PFL_0121 | - | 02 Ala tRNA
|

124869 | 127769 | + | 2901 | 70728250 | PFL_0122 | - | 23S ribosomal RNA |

127896 | 128023 | + | 128 | 70728250 | PFL_r01 | - | 5S ribosomal RNA |

128126 | 128244 | + | 119 | 70728250 | PFL_0123 | - | 5S ribosomal RNA |

215506 | 215582 | - | 77 | 70728250 | PFL_0178 | - | 11 Arg tRNA
|

374422 | 374497 | - | 76 | 70728250 | PFL_0324 | - | 12 Thr tRNA
|

408994 | 409069 | - | 76 | 70728250 | PFL_0356 | - | 17 Phe tRNA
|

670787 | 670873 | - | 87 | 70728250 | PFL_0575 | - | 15 Leu tRNA
|

671039 | 671125 | - | 87 | 70728250 | PFL_0576 | - | 15 Leu tRNA
|

854052 | 855590 | + | 1539 | 70728250 | PFL_0735 | - | 16S ribosomal RNA |

855714 | 855790 | + | 77 | 70728250 | PFL_0736 | - | 14 Ile tRNA
|

855801 | 855876 | + | 76 | 70728250 | PFL_0737 | - | 02 Ala tRNA
|

856110 | 859010 | + | 2901 | 70728250 | PFL_0738 | - | 23S ribosomal RNA |

859138 | 859257 | + | 120 | 70728250 | PFL_0739 | - | 5S ribosomal RNA |

938293 | 938686 | - | 394 | 70728250 | PFL_0811 | - | sRNA |

970963 | 971048 | + | 86 | 70728250 | PFL_0840 | - | 15 Leu tRNA
|

971145 | 971221 | + | 77 | 70728250 | PFL_0841 | - | 16 Met tRNA
|

980179 | 980254 | + | 76 | 70728250 | PFL_0849 | - | 12 Thr tRNA
|

1424493 | 1424569 | - | 77 | 70728250 | PFL_1252 | - | 16 Met tRNA
|

1424772 | 1424848 | - | 77 | 70728250 | PFL_1253 | - | 16 Met tRNA
|

1608375 | 1608448 | - | 74 | 70728250 | PFL_1428 | - | 01 Gly tRNA
|

1640063 | 1640152 | + | 90 | 70728250 | PFL_1461 | - | 08 Ser tRNA
|

1966832 | 1966907 | + | 76 | 70728250 | PFL_1759 | - | 04 Glu tRNA
|

1966910 | 1966985 | + | 76 | 70728250 | PFL_1760 | - | 01 Gly tRNA
|

1967091 | 1967166 | + | 76 | 70728250 | PFL_1761 | - | 04 Glu tRNA
|

1967170 | 1967245 | + | 76 | 70728250 | PFL_1762 | - | 01 Gly tRNA
|

1967350 | 1967425 | + | 76 | 70728250 | PFL_1763 | - | 04 Glu tRNA
|

1967429 | 1967504 | + | 76 | 70728250 | PFL_1764 | - | 01 Gly tRNA
|

2042089 | 2042178 | + | 90 | 70728250 | PFL_1841 | - | 08 Ser tRNA
|

2270242 | 2270317 | - | 76 | 70728250 | PFL_2042 | - | 07 Asn tRNA
|

2279398 | 2279473 | + | 76 | 70728250 | PFL_2050 | - | 02 Ala tRNA
|

2279553 | 2279628 | + | 76 | 70728250 | PFL_2051 | - | 04 Glu tRNA
|

2279681 | 2279756 | + | 76 | 70728250 | PFL_2052 | - | 02 Ala tRNA
|

2279836 | 2279911 | + | 76 | 70728250 | PFL_2053 | - | 04 Glu tRNA
|

2279964 | 2280039 | + | 76 | 70728250 | PFL_2054 | - | 02 Ala tRNA
|

2280118 | 2280193 | + | 76 | 70728250 | PFL_2055 | - | 04 Glu tRNA
|

2307592 | 2307667 | + | 76 | 70728250 | PFL_2080 | - | 13 Val tRNA
|

2307727 | 2307803 | + | 77 | 70728250 | PFL_2081 | - | 06 Asp tRNA
|

2307906 | 2307982 | + | 77 | 70728250 | PFL_2082 | - | 06 Asp tRNA
|

2309663 | 2309739 | + | 77 | 70728250 | PFL_2084 | - | 13 Val tRNA
|

2338296 | 2338372 | + | 77 | 70728250 | PFL_2119 | - | 03 Pro tRNA
|

3070553 | 3070627 | - | 75 | 70728250 | PFL_2765 | - | 05 Gln tRNA
|

3944175 | 3944261 | - | 87 | 70728250 | PFL_3425 | - | 15 Leu tRNA
|

3982048 | 3982121 | - | 74 | 70728250 | PFL_3465 | - | 19 Cys tRNA
|

4107954 | 4108029 | - | 76 | 70728250 | PFL_3560 | - | 01 Gly tRNA
|

4338335 | 4338422 | + | 88 | 70728250 | PFL_3739 | - | 08 Ser tRNA
|

4608208 | 4608292 | - | 85 | 70728250 | PFL_3989 | - | 15 Leu tRNA
|

4608350 | 4608425 | - | 76 | 70728250 | PFL_3990 | - | 09 His tRNA
|

4608458 | 4608534 | - | 77 | 70728250 | PFL_3991 | - | 11 Arg tRNA
|

4809976 | 4810095 | - | 120 | 70728250 | PFL_4141 | - | 5S ribosomal RNA |

4810223 | 4813123 | - | 2901 | 70728250 | PFL_4142 | - | 23S ribosomal RNA |

4813357 | 4813432 | - | 76 | 70728250 | PFL_4143 | - | 02 Ala tRNA
|

4813443 | 4813519 | - | 77 | 70728250 | PFL_4144 | - | 14 Ile tRNA
|

4813643 | 4815181 | - | 1539 | 70728250 | PFL_4145 | - | 16S ribosomal RNA |

5112634 | 5112710 | - | 77 | 70728250 | PFL_4402 | - | 06 Asp tRNA
|

5112730 | 5112805 | - | 76 | 70728250 | PFL_4403 | - | 13 Val tRNA
|

5112993 | 5113069 | - | 77 | 70728250 | PFL_4404 | - | 06 Asp tRNA
|

5113089 | 5113164 | - | 76 | 70728250 | PFL_4405 | - | 13 Val tRNA
|

5209370 | 5209446 | - | 77 | 70728250 | PFL_4495 | - | 11 Arg tRNA
|

5213418 | 5213494 | - | 77 | 70728250 | PFL_4501 | - | 11 Arg tRNA
|

5213567 | 5213643 | - | 77 | 70728250 | PFL_4502 | - | 11 Arg tRNA
|

5213751 | 5213841 | - | 91 | 70728250 | PFL_4503 | - | 08 Ser tRNA
|

5378468 | 5378541 | - | 74 | 70728250 | PFL_4658 | - | Xaa tRNA |

5493511 | 5493586 | - | 76 | 70728250 | PFL_4753 | - | 10 Lys tRNA
|

5728407 | 5728491 | + | 85 | 70728250 | PFL_4976 | - | 15 Leu tRNA
|

5924323 | 5924397 | + | 75 | 70728250 | PFL_5164 | - | 05 Gln tRNA
|

5940615 | 5940691 | + | 77 | 70728250 | PFL_5179 | - | 16 Met tRNA
|

6008928 | 6009047 | - | 120 | 70728250 | PFL_5245 | - | 5S ribosomal RNA |

6009175 | 6012075 | - | 2901 | 70728250 | PFL_5246 | - | 23S ribosomal RNA |

6012309 | 6012384 | - | 76 | 70728250 | PFL_5247 | - | 02 Ala tRNA
|

6012395 | 6012471 | - | 77 | 70728250 | PFL_5248 | - | 14 Ile tRNA
|

6012595 | 6014133 | - | 1539 | 70728250 | PFL_5249 | - | 16S ribosomal RNA |

6068097 | 6068173 | - | 77 | 70728250 | PFL_5300 | - | 03 Pro tRNA
|

6068269 | 6068344 | - | 76 | 70728250 | PFL_5301 | - | 10 Lys tRNA
|

6068350 | 6068426 | - | 77 | 70728250 | PFL_5302 | - | 03 Pro tRNA
|

6068436 | 6068511 | - | 76 | 70728250 | PFL_5303 | - | 07 Asn tRNA
|

6379174 | 6379249 | - | 76 | 70728250 | PFL_5596 | - | 20 Trp tRNA
|

6380582 | 6380657 | - | 76 | 70728250 | PFL_5598 | - | 12 Thr tRNA
|

6380684 | 6380757 | - | 74 | 70728250 | PFL_5599 | - | 01 Gly tRNA
|

6380782 | 6380866 | - | 85 | 70728250 | PFL_5600 | - | 18 Tyr tRNA
|

6382748 | 6382867 | - | 120 | 70728250 | PFL_5602 | - | 5S ribosomal RNA |

6382995 | 6385895 | - | 2901 | 70728250 | PFL_5603 | - | 23S ribosomal RNA |

6386129 | 6386204 | - | 76 | 70728250 | PFL_5604 | - | 02 Ala tRNA
|

6386215 | 6386291 | - | 77 | 70728250 | PFL_5605 | - | 14 Ile tRNA
|

6386415 | 6387953 | - | 1539 | 70728250 | PFL_5606 | - | 16S ribosomal RNA |

6455714 | 6455790 | + | 77 | 70728250 | PFL_5665 | - | 16 Met tRNA
|