Материалы:NC 007404

LOCUS NC_007404 2909809 bp DNA circular BCT 07-FEB-2006 DEFINITION Thiobacillus denitrificans ATCC 25259, complete genome. ACCESSION NC_007404 VERSION NC_007404.1 GI:74316018 KEYWORDS . SOURCE Thiobacillus denitrificans ATCC 25259 ORGANISM Thiobacillus denitrificans ATCC 25259 Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus. REFERENCE 1 (bases 1 to 2909809) AUTHORS Beller,H.R., Chain,P.S., Letain,T.E., Chakicherla,A., Larimer,F.W., Richardson,P.M., Coleman,M.A., Wood,A.P. and Kelly,D.P. CONSRTM US DOE Joint Genome Institute TITLE The Genome Sequence of the Obligately Chemolithoautotrophic, Facultatively Anaerobic Bacterium Thiobacillus denitrificans JOURNAL J. Bacteriol. 188 (4), 1473-1488 (2006) PUBMED 16452431 REFERENCE 2 (bases 1 to 2909809) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-SEP-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2909809) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Kyripides,N., Lykidis,A. and Richardson,P. TITLE Direct Submission JOURNAL Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000116. URL -- http://www.jgi.doe.gov Source DNA available from Harry Beller (beller2@llnl.gov) Bacteria available from ATCC: ATCC 25259 Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

90806 | 90881 | - | 76 | 74316018 | Tbd_R0001 | - | 17 Phe tRNA
|

116736 | 116972 | + | 237 | 74316018 | Tbd_R0002 | - | RNA component of RNaseP |

157660 | 157736 | + | 77 | 74316018 | Tbd_R0003 | - | 11 Arg tRNA
|

415383 | 415457 | + | 75 | 74316018 | Tbd_R0004 | - | 05 Gln tRNA
|

418981 | 419065 | + | 85 | 74316018 | Tbd_R0005 | - | 18 Tyr tRNA
|

419145 | 419218 | + | 74 | 74316018 | Tbd_R0006 | - | 01 Gly tRNA
|

419255 | 419329 | + | 75 | 74316018 | Tbd_R0007 | - | 12 Thr tRNA
|

420743 | 420818 | + | 76 | 74316018 | Tbd_R0008 | - | 20 Trp tRNA
|

478097 | 479599 | + | 1503 | 74316018 | Tbd_R0009 | - | 16S ribosomal RNA |

479682 | 479758 | + | 77 | 74316018 | Tbd_R0010 | - | 14 Ile tRNA
|

479898 | 479973 | + | 76 | 74316018 | Tbd_R0011 | - | 02 Ala tRNA
|

480436 | 483317 | + | 2882 | 74316018 | Tbd_R0012 | - | 23S ribosomal RNA |

483460 | 483571 | + | 112 | 74316018 | Tbd_R0013 | - | 5S ribosomal RNA |

544561 | 544659 | + | 99 | 74316018 | Tbd_R0014 | - | SRP RNA; RNA component of signal recognitionparticle |

636133 | 636219 | - | 87 | 74316018 | Tbd_R0015 | - | 15 Leu tRNA
|

729015 | 729090 | - | 76 | 74316018 | Tbd_R0016 | - | 09 His tRNA
|

729127 | 729203 | - | 77 | 74316018 | Tbd_R0017 | - | 11 Arg tRNA
|

729235 | 729311 | - | 77 | 74316018 | Tbd_R0018 | - | 03 Pro tRNA
|

741047 | 741133 | - | 87 | 74316018 | Tbd_R0019 | - | 15 Leu tRNA
|

741159 | 741232 | - | 74 | 74316018 | Tbd_R0020 | - | 19 Cys tRNA
|

741302 | 741377 | - | 76 | 74316018 | Tbd_R0021 | - | 01 Gly tRNA
|

913834 | 913910 | - | 77 | 74316018 | Tbd_R0022 | - | 03 Pro tRNA
|

1004945 | 1005311 | - | 367 | 74316018 | Tbd_R0023 | - | tmRNA |

1032021 | 1032097 | - | 77 | 74316018 | Tbd_R0024 | - | 11 Arg tRNA
|

1032154 | 1032247 | - | 94 | 74316018 | Tbd_R0025 | - | 08 Ser tRNA
|

1075594 | 1075670 | + | 77 | 74316018 | Tbd_R0026 | - | 13 Val tRNA
|

1083358 | 1083434 | + | 77 | 74316018 | Tbd_R0027 | - | 03 Pro tRNA
|

1196796 | 1196880 | + | 85 | 74316018 | Tbd_R0028 | - | 15 Leu tRNA
|

1289997 | 1290086 | + | 90 | 74316018 | Tbd_R0029 | - | 08 Ser tRNA
|

1621594 | 1621684 | - | 91 | 74316018 | Tbd_R0030 | - | 08 Ser tRNA
|

1655634 | 1655709 | + | 76 | 74316018 | Tbd_R0031 | - | 07 Asn tRNA
|

1760787 | 1760863 | - | 77 | 74316018 | Tbd_R0032 | - | 06 Asp tRNA
|

1760909 | 1760984 | - | 76 | 74316018 | Tbd_R0033 | - | 13 Val tRNA
|

1787407 | 1787491 | - | 85 | 74316018 | Tbd_R0034 | - | 15 Leu tRNA
|

1819039 | 1819113 | - | 75 | 74316018 | Tbd_R0035 | - | 13 Val tRNA
|

1820647 | 1820722 | + | 76 | 74316018 | Tbd_R0036 | - | 12 Thr tRNA
|

1859921 | 1860032 | - | 112 | 74316018 | Tbd_R0037 | - | 5S ribosomal RNA |

1860219 | 1863117 | - | 2899 | 74316018 | Tbd_R0038 | - | 23S ribosomal RNA |

1863553 | 1863628 | - | 76 | 74316018 | Tbd_R0039 | - | 02 Ala tRNA
|

1863768 | 1863844 | - | 77 | 74316018 | Tbd_R0040 | - | 14 Ile tRNA
|

1863920 | 1865429 | - | 1510 | 74316018 | Tbd_R0041 | - | 16S ribosomal RNA |

1865716 | 1865792 | - | 77 | 74316018 | Tbd_R0042 | - | 16 Met tRNA
|

1929025 | 1929100 | - | 76 | 74316018 | Tbd_R0043 | - | 12 Thr tRNA
|

2087047 | 2087122 | + | 76 | 74316018 | Tbd_R0044 | - | 02 Ala tRNA
|

2087354 | 2087429 | + | 76 | 74316018 | Tbd_R0045 | - | 04 Glu tRNA
|

2093605 | 2093680 | - | 76 | 74316018 | Tbd_R0046 | - | 11 Arg tRNA
|

2166984 | 2167070 | - | 87 | 74316018 | Tbd_R0047 | - | 15 Leu tRNA
|

2214978 | 2215051 | + | 74 | 74316018 | Tbd_R0048 | - | 01 Gly tRNA
|

2281490 | 2281565 | - | 76 | 74316018 | Tbd_R0049 | - | 10 Lys tRNA
|

2462035 | 2462111 | + | 77 | 74316018 | Tbd_R0050 | - | 16 Met tRNA
|

2789044 | 2789120 | - | 77 | 74316018 | Tbd_R0051 | - | 16 Met tRNA
|

2812950 | 2813025 | + | 76 | 74316018 | Tbd_R0052 | - | 02 Ala tRNA
|