Материалы:NC 008541

LOCUS NC_008541 4698945 bp DNA circular BCT 25-OCT-2006 DEFINITION Arthrobacter sp. FB24 chromosome 1, complete sequence. ACCESSION NC_008541 VERSION NC_008541.1 GI:116668568 KEYWORDS . SOURCE Arthrobacter sp. FB24 ORGANISM Arthrobacter sp. FB24 Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Micrococcaceae; Arthrobacter. REFERENCE 1 (bases 1 to 4698945) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome 1 of Arthrobacter sp. FB24 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4698945) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (25-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4698945) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Thompson,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Beasley,F., Chen,W., Jerke,K., Nakatsu,C.H. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (28-AUG-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000454. URL -- http://www.jgi.doe.gov JGI Project ID: 3634492 Source DNA and bacteria available from Cindy H. Nakatsu (cnakatsu@purdue.edu) Contacts: Cindy H. Nakatsu (cnakatsu@purdue.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). Additional notes: There is an uncertain number of G/C in homopolimer repeats in the regions 3501583-3501612, 3732178-3732195. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

11842 | 11915 | + | 74 | 116668568 | Arth_R0001 | - | 14 Ile tRNA
|

12163 | 12238 | + | 76 | 116668568 | Arth_R0002 | - | 02 Ala tRNA
|

33132 | 33214 | + | 83 | 116668568 | Arth_R0003 | - | 15 Leu tRNA
|

76568 | 76640 | + | 73 | 116668568 | Arth_R0004 | - | 10 Lys tRNA
|

218923 | 218995 | + | 73 | 116668568 | Arth_R0005 | - | 10 Lys tRNA
|

421350 | 421422 | + | 73 | 116668568 | Arth_R0006 | - | 04 Glu tRNA
|

421519 | 421592 | + | 74 | 116668568 | Arth_R0007 | - | 06 Asp tRNA
|

421641 | 421716 | + | 76 | 116668568 | Arth_R0008 | - | 17 Phe tRNA
|

595991 | 596080 | - | 90 | 116668568 | Arth_R0009 | - | SRP RNA; RNA component of signal recognition particle |

596911 | 596995 | + | 85 | 116668568 | Arth_R0010 | - | 08 Ser tRNA
|

687247 | 687336 | - | 90 | 116668568 | Arth_R0011 | - | 08 Ser tRNA
|

710671 | 710744 | - | 74 | 116668568 | Arth_R0012 | - | 11 Arg tRNA
|

722327 | 722414 | - | 88 | 116668568 | Arth_R0013 | - | 08 Ser tRNA
|

733106 | 733196 | - | 91 | 116668568 | Arth_R0014 | - | 08 Ser tRNA
|

760748 | 760820 | - | 73 | 116668568 | Arth_R0015 | - | 12 Thr tRNA
|

792344 | 793860 | + | 1517 | 116668568 | Arth_R0016 | - | 16S ribosomal RNA |

794378 | 797515 | + | 3138 | 116668568 | Arth_R0017 | - | 23S ribosomal RNA |

797736 | 797852 | + | 117 | 116668568 | Arth_R0018 | - | 5S ribosomal RNA |

816148 | 816224 | + | 77 | 116668568 | Arth_R0019 | - | 12 Thr tRNA
|

877148 | 877220 | - | 73 | 116668568 | Arth_R0020 | - | 11 Arg tRNA
|

1145794 | 1147310 | + | 1517 | 116668568 | Arth_R0021 | - | 16S ribosomal RNA |

1147827 | 1150964 | + | 3138 | 116668568 | Arth_R0022 | - | 23S ribosomal RNA |

1151187 | 1151303 | + | 117 | 116668568 | Arth_R0023 | - | 5S ribosomal RNA |

1251644 | 1251717 | + | 74 | 116668568 | Arth_R0024 | - | 15 Leu tRNA
|

1326164 | 1326235 | + | 72 | 116668568 | Arth_R0025 | - | 05 Gln tRNA
|

1502820 | 1502892 | + | 73 | 116668568 | Arth_R0026 | - | 07 Asn tRNA
|

1503019 | 1503091 | + | 73 | 116668568 | Arth_R0027 | - | 07 Asn tRNA
|

1509118 | 1509191 | + | 74 | 116668568 | Arth_R0028 | - | 16 Met tRNA
|

1678840 | 1680356 | + | 1517 | 116668568 | Arth_R0029 | - | 16S ribosomal RNA |

1680874 | 1684011 | + | 3138 | 116668568 | Arth_R0030 | - | 23S ribosomal RNA |

1684234 | 1684350 | + | 117 | 116668568 | Arth_R0031 | - | 5S ribosomal RNA |

1714644 | 1714720 | + | 77 | 116668568 | Arth_R0032 | - | 03 Pro tRNA
|

1862990 | 1863064 | - | 75 | 116668568 | Arth_R0033 | - | 13 Val tRNA
|

1863103 | 1863175 | - | 73 | 116668568 | Arth_R0034 | - | 01 Gly tRNA
|

1863231 | 1863305 | - | 75 | 116668568 | Arth_R0035 | - | 13 Val tRNA
|

1863348 | 1863418 | - | 71 | 116668568 | Arth_R0036 | - | 19 Cys tRNA
|

1863465 | 1863537 | - | 73 | 116668568 | Arth_R0037 | - | 01 Gly tRNA
|

1863854 | 1863928 | + | 75 | 116668568 | Arth_R0038 | - | 13 Val tRNA
|

1892239 | 1892320 | + | 82 | 116668568 | Arth_R0039 | - | 15 Leu tRNA
|

2436509 | 2436594 | - | 86 | 116668568 | Arth_R0040 | - | 15 Leu tRNA
|

2670834 | 2670906 | - | 73 | 116668568 | Arth_R0041 | - | 02 Ala tRNA
|

2671099 | 2671174 | - | 76 | 116668568 | Arth_R0042 | - | 02 Ala tRNA
|

2701743 | 2701817 | - | 75 | 116668568 | Arth_R0043 | - | 03 Pro tRNA
|

2701975 | 2702048 | + | 74 | 116668568 | Arth_R0044 | - | 01 Gly tRNA
|

2715875 | 2715947 | + | 73 | 116668568 | Arth_R0045 | - | 11 Arg tRNA
|

2731989 | 2732061 | + | 73 | 116668568 | Arth_R0046 | - | 09 His tRNA
|

2735957 | 2736294 | - | 338 | 116668568 | Arth_R0068 | - | RNA component of RNaseP |

2756573 | 2756648 | - | 76 | 116668568 | Arth_R0047 | - | 13 Val tRNA
|

2827052 | 2827127 | - | 76 | 116668568 | Arth_R0048 | - | 04 Glu tRNA
|

2827255 | 2827326 | - | 72 | 116668568 | Arth_R0049 | - | 05 Gln tRNA
|

2854533 | 2854608 | + | 76 | 116668568 | Arth_R0050 | - | 10 Lys tRNA
|

2856320 | 2856401 | + | 82 | 116668568 | Arth_R0051 | - | 15 Leu tRNA
|

2947636 | 2947708 | + | 73 | 116668568 | Arth_R0052 | - | 11 Arg tRNA
|

2985134 | 2985502 | - | 369 | 116668568 | Arth_R0069 | - | tmRNA |

3091249 | 3091325 | - | 77 | 116668568 | Arth_R0053 | - | 16 Met tRNA
|

3091514 | 3091587 | - | 74 | 116668568 | Arth_R0054 | - | 16 Met tRNA
|

3217415 | 3217490 | - | 76 | 116668568 | Arth_R0055 | - | 02 Ala tRNA
|

3364585 | 3364657 | - | 73 | 116668568 | Arth_R0056 | - | 20 Trp tRNA
|

3416184 | 3416260 | - | 77 | 116668568 | Arth_R0057 | - | 16 Met tRNA
|

3416322 | 3416393 | - | 72 | 116668568 | Arth_R0058 | - | 12 Thr tRNA
|

3444091 | 3444175 | - | 85 | 116668568 | Arth_R0059 | - | 18 Tyr tRNA
|

3828097 | 3828173 | + | 77 | 116668568 | Arth_R0060 | - | 03 Pro tRNA
|

4364506 | 4364579 | + | 74 | 116668568 | Arth_R0061 | - | 01 Gly tRNA
|

4414904 | 4415020 | - | 117 | 116668568 | Arth_R0062 | - | 5S ribosomal RNA |

4415241 | 4418378 | - | 3138 | 116668568 | Arth_R0063 | - | 23S ribosomal RNA |

4418896 | 4420412 | - | 1517 | 116668568 | Arth_R0064 | - | 16S ribosomal RNA |

4425408 | 4425524 | - | 117 | 116668568 | Arth_R0065 | - | 5S ribosomal RNA |

4425746 | 4428883 | - | 3138 | 116668568 | Arth_R0066 | - | 23S ribosomal RNA |

4429401 | 4430917 | - | 1517 | 116668568 | Arth_R0067 | - | 16S ribosomal RNA |