Материалы:NC 007802

LOCUS NC_007802 4317977 bp DNA circular BCT 30-MAR-2006 DEFINITION Jannaschia sp. CCS1, complete genome. ACCESSION NC_007802 VERSION NC_007802.1 GI:89052491 KEYWORDS . SOURCE Jannaschia sp. CCS1 ORGANISM Jannaschia sp. CCS1 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Jannaschia. REFERENCE 1 (bases 1 to 4317977) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Chertkov,O., Saunders,E., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Moran,M.A., Belas,R., Ye,W., Buchan,A., Gonzalez,J.M., Schell,M.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Jannaschia sp. CCS1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4317977) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-MAR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4317977) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Chertkov,O., Saunders,E., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Moran,M.A., Belas,R., Ye,W., Buchan,A., Gonzalez,J.M., Schell,M.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (23-FEB-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000264. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Mary Ann Moran (mmoran@uga.edu) Contacts: Mary Ann Moran (mmoran@uga.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

121018 | 121094 | + | 77 | 89052491 | Jann_R0001 | - | 03 Pro tRNA
|

236994 | 237080 | - | 87 | 89052491 | Jann_R0002 | - | 15 Leu tRNA
|

318356 | 318432 | - | 77 | 89052491 | Jann_R0003 | - | 11 Arg tRNA
|

325459 | 325534 | - | 76 | 89052491 | Jann_R0004 | - | 10 Lys tRNA
|

336726 | 336841 | - | 116 | 89052491 | Jann_R0005 | - | |

546394 | 546469 | + | 76 | 89052491 | Jann_R0006 | - | 20 Trp tRNA
|

618250 | 618326 | + | 77 | 89052491 | Jann_R0007 | - | 11 Arg tRNA
|

795771 | 795846 | + | 76 | 89052491 | Jann_R0008 | - | 02 Ala tRNA
|

1178199 | 1178546 | - | 348 | 89052491 | Jann_R0009 | - | RNA component of RNaseP |

1211447 | 1211533 | + | 87 | 89052491 | Jann_R0010 | - | 15 Leu tRNA
|

1240889 | 1240978 | + | 90 | 89052491 | Jann_R0011 | - | 08 Ser tRNA
|

1489240 | 1489323 | + | 84 | 89052491 | Jann_R0012 | - | 15 Leu tRNA
|

1770624 | 1770700 | - | 77 | 89052491 | Jann_R0013 | - | 03 Pro tRNA
|

1817951 | 1818025 | - | 75 | 89052491 | Jann_R0014 | - | 07 Asn tRNA
|

1820377 | 1820453 | - | 77 | 89052491 | Jann_R0015 | - | 16 Met tRNA
|

1967604 | 1967677 | - | 74 | 89052491 | Jann_R0016 | - | 01 Gly tRNA
|

1997062 | 1997151 | + | 90 | 89052491 | Jann_R0017 | - | 08 Ser tRNA
|

2146891 | 2146967 | + | 77 | 89052491 | Jann_R0018 | - | 11 Arg tRNA
|

2259261 | 2259475 | - | 215 | 89052491 | Jann_R0019 | - | |

2285359 | 2285448 | - | 90 | 89052491 | Jann_R0020 | - | 08 Ser tRNA
|

2392003 | 2392321 | + | 319 | 89052491 | Jann_R0021 | - | tmRNA |

2471282 | 2471358 | - | 77 | 89052491 | Jann_R0022 | - | 03 Pro tRNA
|

2491311 | 2491395 | - | 85 | 89052491 | Jann_R0023 | - | 15 Leu tRNA
|

2508751 | 2508827 | - | 77 | 89052491 | Jann_R0024 | - | 06 Asp tRNA
|

2509178 | 2509254 | - | 77 | 89052491 | Jann_R0025 | - | 06 Asp tRNA
|

2513565 | 2513640 | - | 76 | 89052491 | Jann_R0026 | - | 13 Val tRNA
|

2514358 | 2514432 | - | 75 | 89052491 | Jann_R0027 | - | 13 Val tRNA
|

2648503 | 2648578 | - | 76 | 89052491 | Jann_R0028 | - | 12 Thr tRNA
|

2805559 | 2805633 | + | 75 | 89052491 | Jann_R0029 | - | 01 Gly tRNA
|

2814922 | 2815005 | + | 84 | 89052491 | Jann_R0030 | - | Xaa tRNA |

2889361 | 2889435 | - | 75 | 89052491 | Jann_R0031 | - | 17 Phe tRNA
|

2907755 | 2907829 | + | 75 | 89052491 | Jann_R0032 | - | 12 Thr tRNA
|

2937348 | 2937421 | - | 74 | 89052491 | Jann_R0033 | - | 01 Gly tRNA
|

2957972 | 2958160 | - | 189 | 89052491 | Jann_R0034 | - | |

3023715 | 3023789 | + | 75 | 89052491 | Jann_R0035 | - | 04 Glu tRNA
|

3256789 | 3256876 | + | 88 | 89052491 | Jann_R0036 | - | 15 Leu tRNA
|

3310119 | 3310192 | + | 74 | 89052491 | Jann_R0037 | - | 19 Cys tRNA
|

3456370 | 3456446 | - | 77 | 89052491 | Jann_R0038 | - | 09 His tRNA
|

3578447 | 3578536 | + | 90 | 89052491 | Jann_R0039 | - | 08 Ser tRNA
|

3675590 | 3675666 | - | 77 | 89052491 | Jann_R0040 | - | 11 Arg tRNA
|

3691970 | 3692073 | + | 104 | 89052491 | Jann_R0041 | - | |

3692077 | 3692151 | + | 75 | 89052491 | Jann_R0042 | - | |

3734324 | 3734398 | + | 75 | 89052491 | Jann_R0043 | - | 05 Gln tRNA
|

3789301 | 3789377 | + | 77 | 89052491 | Jann_R0044 | - | 16 Met tRNA
|

3970799 | 3970899 | + | 101 | 89052491 | Jann_R0045 | - | SRP RNA; RNA component of signal recognition particle |

4078359 | 4078435 | - | 77 | 89052491 | Jann_R0046 | - | 16 Met tRNA
|

4078796 | 4078910 | - | 115 | 89052491 | Jann_R0047 | - | 5S ribosomal RNA |

4079054 | 4082437 | - | 3384 | 89052491 | Jann_R0048 | - | 23S ribosomal RNA |

4082846 | 4082921 | - | 76 | 89052491 | Jann_R0049 | - | 02 Ala tRNA
|

4082993 | 4083069 | - | 77 | 89052491 | Jann_R0050 | - | 14 Ile tRNA
|

4083217 | 4084677 | - | 1461 | 89052491 | Jann_R0051 | - | 16S ribosomal RNA |

4101511 | 4101585 | + | 75 | 89052491 | Jann_R0052 | - | 13 Val tRNA
|

4190344 | 4190419 | + | 76 | 89052491 | Jann_R0053 | - | 12 Thr tRNA
|