Материалы:NC 009486

LOCUS NC_009486 1823511 bp DNA circular BCT 26-JUN-2007 DEFINITION Thermotoga petrophila RKU-1, complete genome. ACCESSION NC_009486 VERSION NC_009486.1 GI:148269145 KEYWORDS . SOURCE Thermotoga petrophila RKU-1 ORGANISM Thermotoga petrophila RKU-1 Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga. REFERENCE 1 (bases 1 to 1823511) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Noll,K. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Thermotoga petrophila RKU-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 1823511) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1823511) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Noll,K. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000702. URL -- http://www.jgi.doe.gov JGI Project ID: 4002277 Source DNA and bacteria available from Kenneth Noll (kenneth.noll@uconn.edu) Contacts: Kenneth Noll (kenneth.noll@uconn.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

68664 | 68750 | - | 87 | 148269145 | Tpet_R0001 | - | 15 Leu tRNA
|

99548 | 99636 | - | 89 | 148269145 | Tpet_R0002 | - | 08 Ser tRNA
|

102919 | 103005 | - | 87 | 148269145 | Tpet_R0003 | - | 15 Leu tRNA
|

173828 | 173901 | - | 74 | 148269145 | Tpet_R0004 | - | 05 Gln tRNA
|

195043 | 195322 | - | 280 | 148269145 | Tpet_R0005 | - | RNase P class A |

321978 | 322053 | - | 76 | 148269145 | Tpet_R0006 | - | 12 Thr tRNA
|

403455 | 403808 | - | 354 | 148269145 | Tpet_R0007 | - | tmRNA |

424450 | 424525 | + | 76 | 148269145 | Tpet_R0008 | - | 10 Lys tRNA
|

424531 | 424617 | + | 87 | 148269145 | Tpet_R0009 | - | 15 Leu tRNA
|

424629 | 424703 | + | 75 | 148269145 | Tpet_R0010 | - | 01 Gly tRNA
|

432763 | 432851 | + | 89 | 148269145 | Tpet_R0011 | - | 08 Ser tRNA
|

460884 | 460959 | - | 76 | 148269145 | Tpet_R0012 | - | 20 Trp tRNA
|

461139 | 461225 | - | 87 | 148269145 | Tpet_R0013 | - | 18 Tyr tRNA
|

461235 | 461310 | - | 76 | 148269145 | Tpet_R0014 | - | 12 Thr tRNA
|

461334 | 461406 | - | 73 | 148269145 | Tpet_R0015 | - | 16 Met tRNA
|

461513 | 461588 | - | 76 | 148269145 | Tpet_R0016 | - | 16 Met tRNA
|

515521 | 515594 | + | 74 | 148269145 | Tpet_R0017 | - | 05 Gln tRNA
|

589246 | 589322 | - | 77 | 148269145 | Tpet_R0018 | - | 12 Thr tRNA
|

735317 | 735393 | - | 77 | 148269145 | Tpet_R0019 | - | 11 Arg tRNA
|

735407 | 735496 | - | 90 | 148269145 | Tpet_R0020 | - | 08 Ser tRNA
|

737048 | 737123 | + | 76 | 148269145 | Tpet_R0021 | - | 01 Gly tRNA
|

737135 | 737211 | + | 77 | 148269145 | Tpet_R0022 | - | 11 Arg tRNA
|

737222 | 737297 | + | 76 | 148269145 | Tpet_R0023 | - | 09 His tRNA
|

737303 | 737379 | + | 77 | 148269145 | Tpet_R0024 | - | 11 Arg tRNA
|

741146 | 741221 | - | 76 | 148269145 | Tpet_R0025 | - | 02 Ala tRNA
|

749558 | 749685 | - | 128 | 148269145 | Tpet_R0026 | - | 5S ribosomal RNA |

749724 | 750701 | - | 978 | 148269145 | Tpet_R0027 | - | 23S ribosomal RNA |

751403 | 753441 | - | 2039 | 148269145 | Tpet_R0027 | - | 23S ribosomal RNA |

753482 | 753557 | - | 76 | 148269145 | Tpet_R0028 | - | 02 Ala tRNA
|

753563 | 753639 | - | 77 | 148269145 | Tpet_R0029 | - | 14 Ile tRNA
|

753680 | 755242 | - | 1563 | 148269145 | Tpet_R0030 | - | 16S ribosomal RNA |

793592 | 793668 | - | 77 | 148269145 | Tpet_R0031 | - | 03 Pro tRNA
|

1075434 | 1075511 | + | 78 | 148269145 | Tpet_R0032 | - | 06 Asp tRNA
|

1094542 | 1094632 | - | 91 | 148269145 | Tpet_R0033 | - | 08 Ser tRNA
|

1103791 | 1103866 | + | 76 | 148269145 | Tpet_R0034 | - | 04 Glu tRNA
|

1147459 | 1147535 | - | 77 | 148269145 | Tpet_R0035 | - | 03 Pro tRNA
|

1147701 | 1147775 | + | 75 | 148269145 | Tpet_R0036 | - | 04 Glu tRNA
|

1223912 | 1223987 | - | 76 | 148269145 | Tpet_R0037 | - | 10 Lys tRNA
|

1224009 | 1224083 | - | 75 | 148269145 | Tpet_R0038 | - | 11 Arg tRNA
|

1224090 | 1224165 | - | 76 | 148269145 | Tpet_R0039 | - | 02 Ala tRNA
|

1224355 | 1224430 | - | 76 | 148269145 | Tpet_R0040 | - | 17 Phe tRNA
|

1224443 | 1224517 | - | 75 | 148269145 | Tpet_R0041 | - | 13 Val tRNA
|

1264554 | 1264629 | + | 76 | 148269145 | Tpet_R0042 | - | 11 Arg tRNA
|

1369546 | 1369620 | + | 75 | 148269145 | Tpet_R0043 | - | 13 Val tRNA
|

1388139 | 1388224 | - | 86 | 148269145 | Tpet_R0044 | - | 15 Leu tRNA
|

1388363 | 1388437 | + | 75 | 148269145 | Tpet_R0045 | - | 13 Val tRNA
|

1399812 | 1399888 | - | 77 | 148269145 | Tpet_R0046 | - | 19 Cys tRNA
|

1406546 | 1406635 | + | 90 | 148269145 | Tpet_R0047 | - | 15 Leu tRNA
|

1429800 | 1429875 | - | 76 | 148269145 | Tpet_R0048 | - | 01 Gly tRNA
|

1429981 | 1430057 | + | 77 | 148269145 | Tpet_R0049 | - | 16 Met tRNA
|

1517019 | 1517095 | - | 77 | 148269145 | Tpet_R0050 | - | 03 Pro tRNA
|

1563423 | 1563498 | - | 76 | 148269145 | Tpet_R0051 | - | 07 Asn tRNA
|

1631652 | 1631758 | + | 107 | 148269145 | Tpet_R0052 | - | SRP RNA; RNA component of signal recognition particle |