Материалы:NC 009253

LOCUS NC_009253 3608104 bp DNA circular BCT 31-MAR-2007 DEFINITION Desulfotomaculum reducens MI-1, complete genome. ACCESSION NC_009253 VERSION NC_009253.1 GI:134297881 KEYWORDS . SOURCE Desulfotomaculum reducens MI-1 ORGANISM Desulfotomaculum reducens MI-1 Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum. REFERENCE 1 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tebo,B.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Desulfotomaculum reducens MI-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3608104) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (30-MAR-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3608104) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000612. URL -- http://www.jgi.doe.gov JGI Project ID: 4000266 Source DNA and bacteria available from Bradley M. Tebo (tebo@ebs.ogi.edu) Contacts: Bradley M. Tebo (tebo@ebs.ogi.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

10048 | 11659 | + | 1612 | 134297881 | Dred_R0001 | - | 16S ribosomal RNA |

11738 | 11814 | + | 77 | 134297881 | Dred_R0002 | - | 14 Ile tRNA
|

11832 | 11907 | + | 76 | 134297881 | Dred_R0003 | - | 02 Ala tRNA
|

12068 | 15659 | + | 3592 | 134297881 | Dred_R0004 | - | 23S ribosomal RNA |

15847 | 15963 | + | 117 | 134297881 | Dred_R0005 | - | 5S ribosomal RNA |

24602 | 24691 | + | 90 | 134297881 | Dred_R0006 | - | 08 Ser tRNA
|

24708 | 24801 | + | 94 | 134297881 | Dred_R0007 | - | 08 Ser tRNA
|

25698 | 25774 | + | 77 | 134297881 | Dred_R0008 | - | 11 Arg tRNA
|

25832 | 25908 | + | 77 | 134297881 | Dred_R0009 | - | 11 Arg tRNA
|

25960 | 26036 | + | 77 | 134297881 | Dred_R0010 | - | 11 Arg tRNA
|

26520 | 26611 | + | 92 | 134297881 | Dred_R0011 | - | 08 Ser tRNA
|

49815 | 49906 | + | 92 | 134297881 | Dred_R0012 | - | 08 Ser tRNA
|

50041 | 50141 | + | 101 | 134297881 | Dred_R0013 | - | SRP RNA; RNA component of signal recognition particle |

184639 | 186250 | + | 1612 | 134297881 | Dred_R0014 | - | 16S ribosomal RNA |

186329 | 186405 | + | 77 | 134297881 | Dred_R0015 | - | 14 Ile tRNA
|

186423 | 186498 | + | 76 | 134297881 | Dred_R0016 | - | 02 Ala tRNA
|

186659 | 190250 | + | 3592 | 134297881 | Dred_R0017 | - | 23S ribosomal RNA |

190424 | 190540 | + | 117 | 134297881 | Dred_R0018 | - | 5S ribosomal RNA |

190548 | 190622 | + | 75 | 134297881 | Dred_R0019 | - | 07 Asn tRNA
|

190811 | 190927 | + | 117 | 134297881 | Dred_R0020 | - | 5S ribosomal RNA |

190935 | 191009 | + | 75 | 134297881 | Dred_R0021 | - | 07 Asn tRNA
|

213648 | 213723 | + | 76 | 134297881 | Dred_R0022 | - | 12 Thr tRNA
|

213733 | 213818 | + | 86 | 134297881 | Dred_R0023 | - | 18 Tyr tRNA
|

213886 | 213961 | + | 76 | 134297881 | Dred_R0024 | - | 16 Met tRNA
|

213965 | 214040 | + | 76 | 134297881 | Dred_R0025 | - | 12 Thr tRNA
|

214049 | 214125 | + | 77 | 134297881 | Dred_R0026 | - | 16 Met tRNA
|

361113 | 361317 | + | 205 | 134297881 | Dred_R0027 | - | 5S ribosomal RNA |

392461 | 392536 | + | 76 | 134297881 | Dred_R0028 | - | 05 Gln tRNA
|

392546 | 392621 | + | 76 | 134297881 | Dred_R0029 | - | 10 Lys tRNA
|

406914 | 406986 | + | 73 | 134297881 | Dred_R0030 | - | 10 Lys tRNA
|

441378 | 442989 | + | 1612 | 134297881 | Dred_R0031 | - | 16S ribosomal RNA |

443221 | 446812 | + | 3592 | 134297881 | Dred_R0032 | - | 23S ribosomal RNA |

447000 | 447116 | + | 117 | 134297881 | Dred_R0033 | - | 5S ribosomal RNA |

502748 | 502823 | - | 76 | 134297881 | Dred_R0034 | - | 16 Met tRNA
|

531315 | 531391 | + | 77 | 134297881 | Dred_R0035 | - | 06 Asp tRNA
|

531400 | 531475 | + | 76 | 134297881 | Dred_R0036 | - | 17 Phe tRNA
|

531492 | 531566 | + | 75 | 134297881 | Dred_R0037 | - | 01 Gly tRNA
|

531579 | 531652 | + | 74 | 134297881 | Dred_R0038 | - | 19 Cys tRNA
|

533450 | 533525 | + | 76 | 134297881 | Dred_R0039 | - | 17 Phe tRNA
|

533543 | 533617 | + | 75 | 134297881 | Dred_R0040 | - | 01 Gly tRNA
|

533630 | 533704 | + | 75 | 134297881 | Dred_R0041 | - | 19 Cys tRNA
|

534781 | 534855 | + | 75 | 134297881 | Dred_R0042 | - | 01 Gly tRNA
|

534865 | 534941 | + | 77 | 134297881 | Dred_R0043 | - | 06 Asp tRNA
|

535013 | 535099 | + | 87 | 134297881 | Dred_R0044 | - | 15 Leu tRNA
|

1258506 | 1258582 | + | 77 | 134297881 | Dred_R0045 | - | 03 Pro tRNA
|

1308162 | 1308232 | + | 71 | 134297881 | Dred_R0046 | - | Xaa tRNA |

1332694 | 1334305 | + | 1612 | 134297881 | Dred_R0047 | - | 16S ribosomal RNA |

1334536 | 1338127 | + | 3592 | 134297881 | Dred_R0048 | - | 23S ribosomal RNA |

1338315 | 1338431 | + | 117 | 134297881 | Dred_R0049 | - | 5S ribosomal RNA |

1345371 | 1346982 | + | 1612 | 134297881 | Dred_R0050 | - | 16S ribosomal RNA |

1347398 | 1350989 | + | 3592 | 134297881 | Dred_R0051 | - | 23S ribosomal RNA |

1351177 | 1351293 | + | 117 | 134297881 | Dred_R0052 | - | 5S ribosomal RNA |

1380461 | 1380767 | + | 307 | 134297881 | Dred_R0053 | - | RNase P |

1380879 | 1380954 | + | 76 | 134297881 | Dred_R0054 | - | 02 Ala tRNA
|

1721624 | 1721708 | - | 85 | 134297881 | Dred_R0055 | - | 15 Leu tRNA
|

1733002 | 1733087 | - | 86 | 134297881 | Dred_R0056 | - | 03 Pro tRNA
|

1746823 | 1746899 | + | 77 | 134297881 | Dred_R0057 | - | 13 Val tRNA
|

1964347 | 1964422 | + | 76 | 134297881 | Dred_R0058 | - | 20 Trp tRNA
|

2219505 | 2219709 | - | 205 | 134297881 | Dred_R0059 | - | 5S ribosomal RNA |

2219897 | 2223488 | - | 3592 | 134297881 | Dred_R0060 | - | 23S ribosomal RNA |

2223904 | 2225515 | - | 1612 | 134297881 | Dred_R0061 | - | 16S ribosomal RNA |

2296928 | 2297004 | - | 77 | 134297881 | Dred_R0062 | - | 03 Pro tRNA
|

2319835 | 2319911 | + | 77 | 134297881 | Dred_R0063 | - | 03 Pro tRNA
|

2349174 | 2349249 | + | 76 | 134297881 | Dred_R0064 | - | 04 Glu tRNA
|

2349256 | 2349341 | + | 86 | 134297881 | Dred_R0065 | - | 18 Tyr tRNA
|

2349345 | 2349419 | + | 75 | 134297881 | Dred_R0066 | - | 05 Gln tRNA
|

2350024 | 2350110 | + | 87 | 134297881 | Dred_R0067 | - | 15 Leu tRNA
|

2350260 | 2350346 | + | 87 | 134297881 | Dred_R0068 | - | 15 Leu tRNA
|

2373130 | 2373227 | - | 98 | 134297881 | Dred_R0069 | - | Sec tRNA |

2374959 | 2375033 | - | 75 | 134297881 | Dred_R0070 | - | 01 Gly tRNA
|

2500132 | 2500218 | + | 87 | 134297881 | Dred_R0071 | - | 15 Leu tRNA
|

2679493 | 2679568 | - | 76 | 134297881 | Dred_R0072 | - | 13 Val tRNA
|

2679579 | 2679654 | - | 76 | 134297881 | Dred_R0073 | - | 04 Glu tRNA
|

2679683 | 2679757 | - | 75 | 134297881 | Dred_R0074 | - | 16 Met tRNA
|

2679764 | 2679838 | - | 75 | 134297881 | Dred_R0075 | - | 07 Asn tRNA
|

2747153 | 2747269 | - | 117 | 134297881 | Dred_R0076 | - | 5S ribosomal RNA |

2747457 | 2751048 | - | 3592 | 134297881 | Dred_R0077 | - | 23S ribosomal RNA |

2751280 | 2752891 | - | 1612 | 134297881 | Dred_R0078 | - | 16S ribosomal RNA |

2793540 | 2793624 | - | 85 | 134297881 | Dred_R0079 | - | 15 Leu tRNA
|

2793635 | 2793710 | - | 76 | 134297881 | Dred_R0080 | - | 10 Lys tRNA
|

2793719 | 2793793 | - | 75 | 134297881 | Dred_R0081 | - | 05 Gln tRNA
|

2793813 | 2793889 | - | 77 | 134297881 | Dred_R0082 | - | 09 His tRNA
|

2807849 | 2807924 | + | 76 | 134297881 | Dred_R0083 | - | 16 Met tRNA
|

2808591 | 2808667 | + | 77 | 134297881 | Dred_R0084 | - | 11 Arg tRNA
|

2907452 | 2907525 | - | 74 | 134297881 | Dred_R0085 | - | 01 Gly tRNA
|

3032244 | 3032318 | - | 75 | 134297881 | Dred_R0086 | - | 11 Arg tRNA
|

3165251 | 3165326 | - | 76 | 134297881 | Dred_R0087 | - | 12 Thr tRNA
|

3165433 | 3165508 | - | 76 | 134297881 | Dred_R0088 | - | 12 Thr tRNA
|

3165513 | 3165588 | - | 76 | 134297881 | Dred_R0089 | - | 13 Val tRNA
|

3166112 | 3166187 | + | 76 | 134297881 | Dred_R0090 | - | 13 Val tRNA
|

3166197 | 3166273 | + | 77 | 134297881 | Dred_R0091 | - | 06 Asp tRNA
|

3190893 | 3191009 | - | 117 | 134297881 | Dred_R0092 | - | 5S ribosomal RNA |

3191197 | 3194788 | - | 3592 | 134297881 | Dred_R0093 | - | 23S ribosomal RNA |

3195019 | 3196630 | - | 1612 | 134297881 | Dred_R0094 | - | 16S ribosomal RNA |

3241871 | 3242217 | - | 347 | 134297881 | Dred_R0095 | - | tmRNA |

3580478 | 3580552 | - | 75 | 134297881 | Dred_R0096 | - | 01 Gly tRNA
|

3580614 | 3580689 | - | 76 | 134297881 | Dred_R0097 | - | 04 Glu tRNA
|

3580705 | 3580780 | - | 76 | 134297881 | Dred_R0098 | - | 10 Lys tRNA
|

3580816 | 3580891 | - | 76 | 134297881 | Dred_R0099 | - | 04 Glu tRNA
|

3580906 | 3580981 | - | 76 | 134297881 | Dred_R0100 | - | 10 Lys tRNA
|