Материалы:NC 008686

LOCUS NC_008686 2852282 bp DNA circular BCT 09-AUG-2007 DEFINITION Paracoccus denitrificans PD1222 chromosome 1, complete sequence. ACCESSION NC_008686 VERSION NC_008686.1 GI:119382757 KEYWORDS . SOURCE Paracoccus denitrificans PD1222 ORGANISM Paracoccus denitrificans PD1222 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus. REFERENCE 1 (bases 1 to 2852282) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Spiro,S., Richardson,D.J., Moir,J.W.B., Ferguson,S.J., van Spanning,R.J.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromosome 1 of Paracoccus denitrificans PD1222 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2852282) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-DEC-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2852282) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Spiro,S., Richardson,D.J., Moir,J.W.B., Ferguson,S.J., van Spanning,R.J.M. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (04-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000489. URL -- http://www.jgi.doe.gov JGI Project ID: 3634481 Source DNA and bacteria available from Stephen Spiro (stephen.spiro@utdallas.edu) Contacts: Stephen Spiro (stephen.spiro@utdallas.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. There is an unverified repetitive structure in the vicinity of complement(2413304-2418104) The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

48588 | 48662 | - | 75 | 119382757 | Pden_R0001 | - | 13 Val tRNA
|

58447 | 59902 | + | 1456 | 119382757 | Pden_R0002 | - | 16S ribosomal RNA |

60071 | 60147 | + | 77 | 119382757 | Pden_R0003 | - | 14 Ile tRNA
|

60210 | 60285 | + | 76 | 119382757 | Pden_R0004 | - | 02 Ala tRNA
|

60609 | 63451 | + | 2843 | 119382757 | Pden_R0005 | - | 23S ribosomal RNA |

63561 | 63682 | + | 122 | 119382757 | Pden_R0006 | - | 5S ribosomal RNA |

63740 | 63816 | + | 77 | 119382757 | Pden_R0007 | - | 16 Met tRNA
|

361057 | 361146 | + | 90 | 119382757 | Pden_R0008 | - | 08 Ser tRNA
|

364942 | 365017 | - | 76 | 119382757 | Pden_R0009 | - | 10 Lys tRNA
|

411262 | 411338 | + | 77 | 119382757 | Pden_R0010 | - | 03 Pro tRNA
|

466890 | 466974 | + | 85 | 119382757 | Pden_R0011 | - | 15 Leu tRNA
|

506103 | 506176 | - | 74 | 119382757 | Pden_R0012 | - | 01 Gly tRNA
|

722941 | 723016 | + | 76 | 119382757 | Pden_R0013 | - | 20 Trp tRNA
|

848876 | 848952 | + | 77 | 119382757 | Pden_R0014 | - | 03 Pro tRNA
|

857717 | 857793 | - | 77 | 119382757 | Pden_R0015 | - | 11 Arg tRNA
|

894322 | 894398 | + | 77 | 119382757 | Pden_R0016 | - | 16 Met tRNA
|

948593 | 948682 | + | 90 | 119382757 | Pden_R0017 | - | 08 Ser tRNA
|

1178499 | 1178575 | + | 77 | 119382757 | Pden_R0018 | - | 06 Asp tRNA
|

1195017 | 1195091 | - | 75 | 119382757 | Pden_R0019 | - | 05 Gln tRNA
|

1274404 | 1274493 | - | 90 | 119382757 | Pden_R0020 | - | 08 Ser tRNA
|

1343520 | 1343603 | - | 84 | 119382757 | Pden_R0021 | - | 15 Leu tRNA
|

1523471 | 1523547 | - | 77 | 119382757 | Pden_R0022 | - | 09 His tRNA
|

1565680 | 1565769 | + | 90 | 119382757 | Pden_R0023 | - | 08 Ser tRNA
|

1725856 | 1725931 | + | 76 | 119382757 | Pden_R0024 | - | 02 Ala tRNA
|

1747394 | 1747494 | + | 101 | 119382757 | Pden_R0025 | - | |

1761801 | 1761875 | + | 75 | 119382757 | Pden_R0026 | - | 07 Asn tRNA
|

1769711 | 1769785 | - | 75 | 119382757 | Pden_R0027 | - | 04 Glu tRNA
|

1771692 | 1771765 | - | 74 | 119382757 | Pden_R0028 | - | 01 Gly tRNA
|

1786959 | 1787034 | + | 76 | 119382757 | Pden_R0029 | - | 17 Phe tRNA
|

1788974 | 1789050 | - | 77 | 119382757 | Pden_R0030 | - | 11 Arg tRNA
|

1806275 | 1806376 | + | 102 | 119382757 | Pden_R0031 | - | SRP RNA; RNA component of signal recognition particle |

1863668 | 1863745 | + | 78 | 119382757 | Pden_R0032 | - | 03 Pro tRNA
|

1879838 | 1879912 | + | 75 | 119382757 | Pden_R0033 | - | 04 Glu tRNA
|

1907794 | 1907870 | - | 77 | 119382757 | Pden_R0034 | - | 06 Asp tRNA
|

1907899 | 1907975 | - | 77 | 119382757 | Pden_R0035 | - | 06 Asp tRNA
|

1931540 | 1931626 | - | 87 | 119382757 | Pden_R0036 | - | 15 Leu tRNA
|

1965201 | 1965275 | + | 75 | 119382757 | Pden_R0037 | - | 12 Thr tRNA
|

1974456 | 1974532 | - | 77 | 119382757 | Pden_R0038 | - | 16 Met tRNA
|

1974590 | 1974711 | - | 122 | 119382757 | Pden_R0039 | - | 5S ribosomal RNA |

1974821 | 1977663 | - | 2843 | 119382757 | Pden_R0040 | - | 23S ribosomal RNA |

1977987 | 1978062 | - | 76 | 119382757 | Pden_R0041 | - | 02 Ala tRNA
|

1978125 | 1978201 | - | 77 | 119382757 | Pden_R0042 | - | 14 Ile tRNA
|

1978370 | 1979825 | - | 1456 | 119382757 | Pden_R0043 | - | 16S ribosomal RNA |

1982093 | 1982169 | - | 77 | 119382757 | Pden_R0044 | - | 11 Arg tRNA
|

2000687 | 2000762 | - | 76 | 119382757 | Pden_R0045 | - | 12 Thr tRNA
|

2057161 | 2057246 | + | 86 | 119382757 | Pden_R0046 | - | 15 Leu tRNA
|

2281331 | 2281406 | - | 76 | 119382757 | Pden_R0047 | - | 16 Met tRNA
|

2341732 | 2341807 | - | 76 | 119382757 | Pden_R0048 | - | 02 Ala tRNA
|

2387713 | 2387787 | + | 75 | 119382757 | Pden_R0049 | - | 01 Gly tRNA
|

2423242 | 2423315 | + | 74 | 119382757 | Pden_R0050 | - | 19 Cys tRNA
|

2841537 | 2841628 | - | 92 | 119382757 | Pden_R0051 | - | Sec tRNA |