Материалы:NC 007498

LOCUS NC_007498 3665893 bp DNA circular BCT 18-MAY-2007 DEFINITION Pelobacter carbinolicus DSM 2380, complete genome. ACCESSION NC_007498 VERSION NC_007498.2 GI:90960985 KEYWORDS . SOURCE Pelobacter carbinolicus DSM 2380 ORGANISM Pelobacter carbinolicus DSM 2380 Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter. REFERENCE 1 (bases 1 to 3665893) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Chertkov,O., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Lovley,D.R., Blunt-Harris,E.L., DiDonato,R., Aklujkar,M., Haveman,S., Butler,J., Chaudhuri,S.K., DiDonato,L.N., Ding,Y.R., Glaven,R., Segura-Gonzalez,D., Izallalen,M., Kaye,J., Kim,B.C., Juarez-Lopez,K., Mester,T., Postier,B., Risso,C., Tran,H., Brown,P., Nicoll,J.S., Huang,K., Keller,K., Alm,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Pelobacter carbinolicus DSM 2380 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3665893) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Chertkov,O., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Lovley,D.R., Blunt-Harris,E.L., DiDonato,R., Aklujkar,M., Haveman,S., Butler,J., Chaudhuri,S.K., DiDonato,L.N., Ding,Y.R., Glaven,R., Segura-Gonzalez,D., Izallalen,M., Kaye,J., Kim,B.C., Juarez-Lopez,K., Mester,T., Postier,B., Risso,C., Tran,H., Brown,P., Nicoll,J.S., Huang,K., Keller,K., Alm,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (20-SEP-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA REMARK Sequence update by submitter REFERENCE 3 (bases 1 to 3665893) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-OCT-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 3665893) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chertkov,O., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (07-OCT-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000142. On Apr 1, 2006 this sequence version replaced gi:77917618. URL -- http://www.jgi.doe.gov JGI Project ID: 3436109 Source DNA available from Derek Lovley (dlovley@umass.edu) Bacteria available from DSMZ 2380 Contacts: Derek Lovley (dlovley@umass.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

262331 | 262406 | + | 76 | 90960985 | Pcar_R0001 | - | 10 Lys tRNA
|

262412 | 262489 | + | 78 | 90960985 | Pcar_R0002 | - | 04 Glu tRNA
|

263125 | 263200 | + | 76 | 90960985 | Pcar_R0003 | - | 10 Lys tRNA
|

263206 | 263283 | + | 78 | 90960985 | Pcar_R0004 | - | 04 Glu tRNA
|

409594 | 409679 | + | 86 | 90960985 | Pcar_R0005 | - | 08 Ser tRNA
|

409807 | 409900 | + | 94 | 90960985 | Pcar_R0006 | - | 08 Ser tRNA
|

409987 | 410063 | + | 77 | 90960985 | Pcar_R0007 | - | 11 Arg tRNA
|

410607 | 410694 | + | 88 | 90960985 | Pcar_R0008 | - | 08 Ser tRNA
|

461695 | 461782 | + | 88 | 90960985 | Pcar_R0009 | - | 08 Ser tRNA
|

461860 | 461883 | + | 24 | 90960985 | Pcar_R0010 | - | |

514641 | 514717 | - | 77 | 90960985 | Pcar_R0011 | - | 16 Met tRNA
|

786828 | 786904 | - | 77 | 90960985 | Pcar_R0012 | - | 03 Pro tRNA
|

834733 | 834808 | + | 76 | 90960985 | Pcar_R0013 | - | 12 Thr tRNA
|

834855 | 834939 | + | 85 | 90960985 | Pcar_R0014 | - | 18 Tyr tRNA
|

835063 | 835139 | + | 77 | 90960985 | Pcar_R0015 | - | 01 Gly tRNA
|

835175 | 835250 | + | 76 | 90960985 | Pcar_R0016 | - | 12 Thr tRNA
|

836832 | 836908 | + | 77 | 90960985 | Pcar_R0017 | - | 20 Trp tRNA
|

882990 | 883066 | + | 77 | 90960985 | Pcar_R0018 | - | 16 Met tRNA
|

939476 | 939551 | - | 76 | 90960985 | Pcar_R0019 | - | 12 Thr tRNA
|

981495 | 981588 | + | 94 | 90960985 | Pcar_R0020 | - | Sec tRNA |

1147261 | 1147346 | - | 86 | 90960985 | Pcar_R0021 | - | 15 Leu tRNA
|

1165075 | 1165150 | - | 76 | 90960985 | Pcar_R0022 | - | 02 Ala tRNA
|

1168114 | 1168190 | + | 77 | 90960985 | Pcar_R0023 | - | 16 Met tRNA
|

1544543 | 1544617 | - | 75 | 90960985 | Pcar_R0024 | - | 01 Gly tRNA
|

1544706 | 1544780 | - | 75 | 90960985 | Pcar_R0025 | - | 01 Gly tRNA
|

1559548 | 1559634 | + | 87 | 90960985 | Pcar_R0026 | - | 15 Leu tRNA
|

1648307 | 1648383 | + | 77 | 90960985 | Pcar_R0027 | - | 03 Pro tRNA
|

1648391 | 1648467 | + | 77 | 90960985 | Pcar_R0028 | - | 11 Arg tRNA
|

1666100 | 1666174 | + | 75 | 90960985 | Pcar_R0029 | - | 13 Val tRNA
|

1678921 | 1678997 | + | 77 | 90960985 | Pcar_R0030 | - | 11 Arg tRNA
|

1744882 | 1744968 | + | 87 | 90960985 | Pcar_R0031 | - | 15 Leu tRNA
|

1746454 | 1746540 | + | 87 | 90960985 | Pcar_R0032 | - | 15 Leu tRNA
|

1748036 | 1748110 | + | 75 | 90960985 | Pcar_R0033 | - | 13 Val tRNA
|

1837403 | 1837479 | + | 77 | 90960985 | Pcar_R0034 | - | 03 Pro tRNA
|

1918571 | 1918645 | - | 75 | 90960985 | Pcar_R0035 | - | 01 Gly tRNA
|

1923759 | 1923832 | - | 74 | 90960985 | Pcar_R0036 | - | 05 Gln tRNA
|

1929459 | 1929532 | - | 74 | 90960985 | Pcar_R0037 | - | 19 Cys tRNA
|

1967381 | 1967457 | - | 77 | 90960985 | Pcar_R0038 | - | 06 Asp tRNA
|

1967476 | 1967551 | - | 76 | 90960985 | Pcar_R0039 | - | 13 Val tRNA
|

1967639 | 1967715 | - | 77 | 90960985 | Pcar_R0040 | - | 06 Asp tRNA
|

1967734 | 1967809 | - | 76 | 90960985 | Pcar_R0041 | - | 13 Val tRNA
|

1967818 | 1967894 | - | 77 | 90960985 | Pcar_R0042 | - | 06 Asp tRNA
|

1974135 | 1974217 | - | 83 | 90960985 | Pcar_R0043 | - | 15 Leu tRNA
|

1974381 | 1974456 | - | 76 | 90960985 | Pcar_R0044 | - | 09 His tRNA
|

2135011 | 2135368 | - | 358 | 90960985 | Pcar_R0045 | - | |

2336448 | 2336522 | - | 75 | 90960985 | Pcar_R0046 | - | 05 Gln tRNA
|

2475643 | 2475729 | - | 87 | 90960985 | Pcar_R0047 | - | 15 Leu tRNA
|

2746913 | 2747023 | - | 111 | 90960985 | Pcar_R0048 | - | 5S ribosomal RNA |

2747152 | 2750107 | - | 2956 | 90960985 | Pcar_R0049 | - | 23S ribosomal RNA |

2750249 | 2750324 | - | 76 | 90960985 | Pcar_R0050 | - | 02 Ala tRNA
|

2750334 | 2750410 | - | 77 | 90960985 | Pcar_R0051 | - | 14 Ile tRNA
|

2750635 | 2752105 | - | 1471 | 90960985 | Pcar_R0052 | - | 16S ribosomal RNA |

2752495 | 2752605 | - | 111 | 90960985 | Pcar_R0053 | - | 5S ribosomal RNA |

2752734 | 2755689 | - | 2956 | 90960985 | Pcar_R0054 | - | 23S ribosomal RNA |

2755831 | 2755906 | - | 76 | 90960985 | Pcar_R0055 | - | 02 Ala tRNA
|

2755916 | 2755992 | - | 77 | 90960985 | Pcar_R0056 | - | 14 Ile tRNA
|

2756217 | 2757687 | - | 1471 | 90960985 | Pcar_R0057 | - | 16S ribosomal RNA |

2997845 | 2997921 | + | 77 | 90960985 | Pcar_R0058 | - | 11 Arg tRNA
|

3126815 | 3127144 | - | 330 | 90960985 | Pcar_R0059 | - | |

3129309 | 3129384 | - | 76 | 90960985 | Pcar_R0060 | - | 16 Met tRNA
|

3317316 | 3317388 | - | 73 | 90960985 | Pcar_R0061 | - | 15 Leu tRNA
|

3437068 | 3437143 | - | 76 | 90960985 | Pcar_R0062 | - | 07 Asn tRNA
|

3627395 | 3627470 | - | 76 | 90960985 | Pcar_R0063 | - | 17 Phe tRNA
|