Материалы:NC 003197

```
LOCUS NC_003197 4857432 bp DNA circular BCT 13-APR-2007
DEFINITION Salmonella typhimurium LT2, complete genome.
ACCESSION NC_003197
VERSION NC_003197.1 GI:16763390
KEYWORDS .
SOURCE Salmonella typhimurium LT2
ORGANISM Salmonella typhimurium LT2
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Salmonella.
REFERENCE 1 (bases 1 to 4857432)
AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium
LT2
JOURNAL Nature 413 (6858), 852-856 (2001)
PUBMED 11677609
REFERENCE 2 (bases 1 to 4857432)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4857432)
CONSRTM NCBI Microbial Genomes Annotation Project
TITLE Direct Submission
JOURNAL Submitted (06-NOV-2001) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE006468.
COMPLETENESS: full length.
REFSEQ gene predictions performed by GeneMark 2.4/GeneMark.hmm 2.0
with comparison to original submitter provided annotation; tRNA
sequences predicted using tRNAscan-SE 1.21.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

289189 | 290732 | + | 1544 | 16763390 | STM0249 | - | 16S ribosomal RNA |

290800 | 290873 | + | 74 | 16763390 | STM0250 | - | 14 Ile tRNA
|

290976 | 291051 | + | 76 | 16763390 | STM0251 | - | 02 Ala tRNA
|

291244 | 294336 | + | 3093 | 16763390 | STM0252 | - | 23S ribosomal RNA |

294519 | 294640 | + | 122 | 16763390 | STM0253 | - | 5S ribosomal RNA |

294838 | 294911 | + | 74 | 16763390 | STM0254 | - | 13 Val tRNA
|

304277 | 304350 | + | 74 | 16763390 | STM0265 | - | Sec tRNA |

368806 | 368878 | + | 73 | 16763390 | STM0323 | - | 12 Thr tRNA
|

524424 | 524539 | + | 116 | 16763390 | STM0467 | - | 4.5S ribosomal RNA |

613567 | 613640 | + | 74 | 16763390 | STM0553 | - | 11 Arg tRNA
|

617984 | 618056 | + | 73 | 16763390 | STM05559.T1 | - | |

738011 | 738082 | - | 72 | 16763390 | STM0673 | - | 05 Gln tRNA
|

738129 | 738200 | - | 72 | 16763390 | STM0674 | - | 05 Gln tRNA
|

738250 | 738323 | - | 74 | 16763390 | STM0675 | - | 16 Met tRNA
|

738342 | 738413 | - | 72 | 16763390 | STM0676 | - | 05 Gln tRNA
|

738452 | 738523 | - | 72 | 16763390 | STM0677 | - | 05 Gln tRNA
|

738550 | 738631 | - | 82 | 16763390 | STM0678 | - | 15 Leu tRNA
|

738643 | 738716 | - | 74 | 16763390 | STM0679 | - | 16 Met tRNA
|

818775 | 818847 | + | 73 | 16763390 | STM0751 | - | 10 Lys tRNA
|

818982 | 819054 | + | 73 | 16763390 | STM0752 | - | 13 Val tRNA
|

819061 | 819133 | + | 73 | 16763390 | STM0753 | - | 10 Lys tRNA
|

819186 | 819258 | + | 73 | 16763390 | STM0754 | - | 10 Lys tRNA
|

819396 | 819468 | + | 73 | 16763390 | STM0755 | - | 10 Lys tRNA
|

1027441 | 1027525 | - | 85 | 16763390 | STM0949 | - | 08 Ser tRNA
|

1175321 | 1175405 | + | 85 | 16763390 | STM1086 | - | 08 Ser tRNA
|

1224743 | 1224827 | - | 85 | 16763390 | STM1134 | - | 08 Ser tRNA
|

1333209 | 1333282 | + | 74 | 16763390 | STM1247 | - | Xaa tRNA |

1345647 | 1345720 | + | 74 | 16763390 | STM1262 | - | Xaa tRNA |

1444831 | 1444937 | - | 107 | 16763390 | STM1363 | - | regulatory RNA |

1501640 | 1501713 | - | 74 | 16763390 | STM1423 | - | 13 Val tRNA
|

1501727 | 1501800 | - | 74 | 16763390 | STM1424 | - | 13 Val tRNA
|

1852570 | 1852651 | + | 82 | 16763390 | STM1757 | - | 18 Tyr tRNA
|

1852683 | 1852825 | + | 143 | 16763390 | STM1758 | - | regulatory RNA |

1852859 | 1852940 | + | 82 | 16763390 | STM1759 | - | 18 Tyr tRNA
|

2035366 | 2035449 | - | 84 | 16763390 | STM1942 | - | 15 Leu tRNA
|

2035464 | 2035534 | - | 71 | 16763390 | STM1943 | - | 19 Cys tRNA
|

2035590 | 2035662 | - | 73 | 16763390 | STM1944 | - | 01 Gly tRNA
|

2068650 | 2068733 | - | 84 | 16763390 | STM1985 | - | small regulatory RNA DsrA |

2082177 | 2082263 | - | 87 | 16763390 | STM2000 | - | 08 Ser tRNA
|

2083250 | 2083322 | + | 73 | 16763390 | STM2002 | - | 07 Asn tRNA
|

2084220 | 2084292 | + | 73 | 16763390 | STM2004 | - | 07 Asn tRNA
|

2094165 | 2094237 | - | 73 | 16763390 | STM2012 | - | 07 Asn tRNA
|

2095995 | 2096067 | + | 73 | 16763390 | STM2014 | - | 07 Asn tRNA
|

2330749 | 2330822 | + | 74 | 16763390 | STM2229 | - | 03 Pro tRNA
|

2366830 | 2367005 | - | 176 | 16763390 | STM2268 | - | regulatory RNA |

2505822 | 2505893 | + | 72 | 16763390 | STM2394 | - | 11 Arg tRNA
|

2528939 | 2529011 | - | 73 | 16763390 | STM2411 | - | 02 Ala tRNA
|

2529057 | 2529129 | - | 73 | 16763390 | STM2412 | - | 02 Ala tRNA
|

2531835 | 2531907 | + | 73 | 16763390 | STM2416 | - | 13 Val tRNA
|

2531956 | 2532028 | + | 73 | 16763390 | STM2417 | - | 13 Val tRNA
|

2532073 | 2532145 | + | 73 | 16763390 | STM2418 | - | 13 Val tRNA
|

2532153 | 2532225 | + | 73 | 16763390 | STM2419 | - | 10 Lys tRNA
|

2761647 | 2761720 | - | 74 | 16763390 | STM2615 | - | Xaa tRNA |

2796440 | 2796561 | - | 122 | 16763390 | STM2656 | - | 5S ribosomal RNA |

2796755 | 2799764 | - | 3010 | 16763390 | STM2657 | - | 23S ribosomal RNA |

2799958 | 2800030 | - | 73 | 16763390 | STM2658 | - | Sec tRNA |

2800118 | 2801660 | - | 1543 | 16763390 | STM2659 | - | 16S ribosomal RNA |

2844218 | 2844312 | + | 95 | 16763390 | STM2693 | - | regulatory RNA |

2969928 | 2970001 | - | 74 | 16763390 | STM2821 | - | 11 Arg tRNA
|

2970198 | 2970271 | - | 74 | 16763390 | STM2822 | - | 11 Arg tRNA
|

2970337 | 2970410 | - | 74 | 16763390 | STM2823 | - | 11 Arg tRNA
|

2970476 | 2970549 | - | 74 | 16763390 | STM2824 | - | 11 Arg tRNA
|

2970556 | 2970645 | - | 90 | 16763390 | STM2825 | - | 08 Ser tRNA
|

3116696 | 3117050 | - | 355 | 16763390 | STM2966 | - | regulatory RNA |

3141064 | 3141137 | + | 74 | 16763390 | STM2989 | - | 16 Met tRNA
|

3141170 | 3141243 | + | 74 | 16763390 | STM2990 | - | 16 Met tRNA
|

3197425 | 3197495 | - | 71 | 16763390 | STM3037 | - | 01 Gly tRNA
|

3276146 | 3276218 | + | 73 | 16763390 | STM3116 | - | 17 Phe tRNA
|

3379004 | 3379076 | + | 73 | 16763390 | STM3213 | - | 16 Met tRNA Неверная идентификация
|

3414803 | 3415179 | + | 377 | 16763390 | STM3246 | - | regulatory RNA |

3458506 | 3458579 | - | 74 | 16763390 | STM3289 | - | 16 Met tRNA
|

3461755 | 3461838 | - | 84 | 16763390 | STM3292 | - | 15 Leu tRNA
|

3566622 | 3566743 | - | 122 | 16763390 | STM3393 | - | 5S ribosomal RNA |

3566784 | 3566856 | - | 73 | 16763390 | STM3394 | - | 12 Thr tRNA
|

3566867 | 3566988 | - | 122 | 16763390 | STM3395 | - | 5S ribosomal RNA |

3567078 | 3570071 | - | 2994 | 16763390 | STM3396 | - | 23S ribosomal RNA |

3570307 | 3570379 | - | 73 | 16763390 | STM3397 | - | 05 Gln tRNA
|

3570463 | 3572006 | - | 1544 | 16763390 | STM3398 | - | 16S ribosomal RNA |

3820412 | 3820485 | - | 74 | 16763390 | STM3634 | - | 03 Pro tRNA
|

3948576 | 3948666 | + | 91 | 16763390 | STM3751 | - | Sec tRNA |

4100132 | 4101675 | + | 1544 | 16763390 | STM3889 | - | 16S ribosomal RNA |

4101759 | 4101831 | + | 73 | 16763390 | STM3890 | - | 20 Trp tRNA
|

4102028 | 4105021 | + | 2994 | 16763390 | STM3891 | - | 23S ribosomal RNA |

4105028 | 4105126 | + | 99 | 16763390 | STM3893 | - | regulatory RNA |

4105111 | 4105230 | + | 120 | 16763390 | STM3894 | - | 5S ribosomal RNA |

4105283 | 4105362 | + | 80 | 16763390 | STM3895 | - | Sec tRNA |

4105368 | 4105440 | + | 73 | 16763390 | STM3896 | - | Xaa tRNA |

4140908 | 4140981 | + | 74 | 16763390 | STM3931 | - | 11 Arg tRNA
|

4141039 | 4141111 | + | 73 | 16763390 | STM3932 | - | 09 His tRNA
|

4141135 | 4141218 | + | 84 | 16763390 | STM3933 | - | 15 Leu tRNA
|

4141264 | 4141337 | + | 74 | 16763390 | STM3934 | - | 03 Pro tRNA
|

4196059 | 4197600 | + | 1542 | 16763390 | STM3988 | - | 16S ribosomal RNA |

4197670 | 4197743 | + | 74 | 16763390 | STM3989 | - | 14 Ile tRNA
|

4197858 | 4197930 | + | 73 | 16763390 | STM3990 | - | 02 Ala tRNA
|

4198116 | 4201110 | + | 2995 | 16763390 | STM3991 | - | 23S ribosomal RNA |

4201302 | 4201423 | + | 122 | 16763390 | STM3992 | - | 5S ribosomal RNA |

4209066 | 4209131 | + | 66 | 16763390 | STM4000 | - | spot 42 RNA |

4351130 | 4352673 | + | 1544 | 16763390 | STM4132 | - | 16S ribosomal RNA |

4352741 | 4352814 | + | 74 | 16763390 | STM4133 | - | 13 Val tRNA
|

4352929 | 4353001 | + | 73 | 16763390 | STM4134 | - | 02 Ala tRNA
|

4353187 | 4356180 | + | 2994 | 16763390 | STM4135 | - | 23S ribosomal RNA |

4356373 | 4356493 | + | 121 | 16763390 | STM4136 | - | 5S ribosomal RNA |

4360046 | 4360118 | + | 73 | 16763390 | STM4142 | - | 12 Thr tRNA
|

4360130 | 4360211 | + | 82 | 16763390 | STM4143 | - | 18 Tyr tRNA
|

4360331 | 4360402 | + | 72 | 16763390 | STM4144 | - | 01 Gly tRNA
|

4360412 | 4360484 | + | 73 | 16763390 | STM4145 | - | 12 Thr tRNA
|

4394675 | 4396219 | + | 1545 | 16763390 | STM4177 | - | 16S ribosomal RNA |

4396303 | 4396375 | + | 73 | 16763390 | STM4178 | - | Sec tRNA |

4396611 | 4399604 | + | 2994 | 16763390 | STM4179 | - | 23S ribosomal RNA |

4399797 | 4399918 | + | 122 | 16763390 | STM4180 | - | 5S ribosomal RNA |

4566577 | 4566649 | - | 73 | 16763390 | STM4321 | - | 17 Phe tRNA
|

4596412 | 4596484 | + | 73 | 16763390 | STM4352 | - | 01 Gly tRNA
|

4596644 | 4596716 | + | 73 | 16763390 | STM4353 | - | 01 Gly tRNA
|

4596876 | 4596948 | + | 73 | 16763390 | STM4354 | - | 01 Gly tRNA
|

4730996 | 4731077 | + | 82 | 16763390 | STM4487 | - | 15 Leu tRNA
|

4810613 | 4810696 | - | 84 | 16763390 | STM4553 | - | 15 Leu tRNA
|

4810731 | 4810814 | - | 84 | 16763390 | STM4554 | - | 15 Leu tRNA
|

4810845 | 4810928 | - | 84 | 16763390 | STM4555 | - | 15 Leu tRNA
|