Материалы:NC 007778

LOCUS NC_007778 5331656 bp DNA circular BCT 30-MAR-2006 DEFINITION Rhodopseudomonas palustris HaA2, complete genome. ACCESSION NC_007778 VERSION NC_007778.1 GI:86747127 KEYWORDS . SOURCE Rhodopseudomonas palustris HaA2 ORGANISM Rhodopseudomonas palustris HaA2 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas. REFERENCE 1 (bases 1 to 5331656) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I., Oda,Y., Harwood,C.S. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Rhodopseudomonas palustris HaA2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5331656) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (07-FEB-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5331656) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I., Oda,Y., Harwood,C.S. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (20-JAN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000250. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from Caroline Harwood (csh5@u.washington.edu) Contact: Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

121051 | 121126 | + | 76 | 86747127 | RPB_R0001 | - | 02 Ala tRNA
|

242172 | 242261 | - | 90 | 86747127 | RPB_R0002 | - | 08 Ser tRNA
|

278861 | 278950 | - | 90 | 86747127 | RPB_R0003 | - | 08 Ser tRNA
|

336013 | 336087 | + | 75 | 86747127 | RPB_R0004 | - | 01 Gly tRNA
|

351131 | 351207 | - | 77 | 86747127 | RPB_R0005 | - | Xaa tRNA |

354073 | 354148 | - | 76 | 86747127 | RPB_R0006 | - | 12 Thr tRNA
|

500043 | 500117 | - | 75 | 86747127 | RPB_R0007 | - | 04 Glu tRNA
|

557873 | 557957 | + | 85 | 86747127 | RPB_R0008 | - | 15 Leu tRNA
|

633139 | 633215 | + | 77 | 86747127 | RPB_R0009 | - | 11 Arg tRNA
|

729941 | 730016 | + | 76 | 86747127 | RPB_R0010 | - | 02 Ala tRNA
|

742456 | 742562 | + | 107 | 86747127 | RPB_R0011 | - | RNA component of signal recognition particle |

744308 | 744394 | - | 87 | 86747127 | RPB_R0012 | - | 15 Leu tRNA
|

771267 | 771343 | + | 77 | 86747127 | RPB_R0013 | - | 11 Arg tRNA
|

898097 | 898170 | + | 74 | 86747127 | RPB_R0014 | - | 01 Gly tRNA
|

1059854 | 1059943 | + | 90 | 86747127 | RPB_R0015 | - | 08 Ser tRNA
|

1294504 | 1294585 | + | 82 | 86747127 | RPB_R0016 | - | |

1294586 | 1294676 | + | 91 | 86747127 | RPB_R0017 | - | |

1301820 | 1301896 | + | 77 | 86747127 | RPB_R0018 | - | 03 Pro tRNA
|

1661209 | 1661285 | + | 77 | 86747127 | RPB_R0019 | - | 09 His tRNA
|

1711367 | 1711442 | - | 76 | 86747127 | RPB_R0020 | - | Xaa tRNA |

2225557 | 2225706 | - | 150 | 86747127 | RPB_R0021 | - | |

2253044 | 2253412 | - | 369 | 86747127 | RPB_R0022 | - | RNA component of RNaseP |

2311889 | 2312218 | - | 330 | 86747127 | RPB_R0023 | - | tmRNA |

2372364 | 2372437 | - | 74 | 86747127 | RPB_R0024 | - | 05 Gln tRNA
|

2420157 | 2420243 | + | 87 | 86747127 | RPB_R0025 | - | 15 Leu tRNA
|

2493652 | 2493726 | + | 75 | 86747127 | RPB_R0026 | - | 12 Thr tRNA
|

2496079 | 2496164 | + | 86 | 86747127 | RPB_R0027 | - | 18 Tyr tRNA
|

2603980 | 2604053 | + | 74 | 86747127 | RPB_R0028 | - | 01 Gly tRNA
|

2616419 | 2616494 | + | 76 | 86747127 | RPB_R0029 | - | 20 Trp tRNA
|

2715461 | 2715537 | - | 77 | 86747127 | RPB_R0030 | - | 11 Arg tRNA
|

2726839 | 2726923 | + | 85 | 86747127 | RPB_R0031 | - | 15 Leu tRNA
|

2939436 | 2939520 | + | 85 | 86747127 | RPB_R0032 | - | 15 Leu tRNA
|

2946494 | 2946570 | - | 77 | 86747127 | RPB_R0033 | - | 13 Val tRNA
|

2953560 | 2953636 | + | 77 | 86747127 | RPB_R0034 | - | 06 Asp tRNA
|

3031532 | 3031609 | + | 78 | 86747127 | RPB_R0035 | - | 03 Pro tRNA
|

3263143 | 3263218 | + | 76 | 86747127 | RPB_R0036 | - | 10 Lys tRNA
|

3297966 | 3298040 | + | 75 | 86747127 | RPB_R0037 | - | 07 Asn tRNA
|

3299403 | 3299476 | - | 74 | 86747127 | RPB_R0038 | - | 19 Cys tRNA
|

3334358 | 3334434 | + | 77 | 86747127 | RPB_R0039 | - | 11 Arg tRNA
|

3349909 | 3349985 | - | 77 | 86747127 | RPB_R0040 | - | 03 Pro tRNA
|

3354193 | 3354267 | + | 75 | 86747127 | RPB_R0041 | - | 04 Glu tRNA
|

3462484 | 3462577 | + | 94 | 86747127 | RPB_R0042 | - | 08 Ser tRNA
|

3470486 | 3470575 | + | 90 | 86747127 | RPB_R0043 | - | 08 Ser tRNA
|

3805275 | 3805350 | - | 76 | 86747127 | RPB_R0044 | - | 10 Lys tRNA
|

4276466 | 4276571 | + | 106 | 86747127 | RPB_R0045 | - | |

4397101 | 4397177 | - | 77 | 86747127 | RPB_R0046 | - | 16 Met tRNA
|

4456738 | 4456813 | - | 76 | 86747127 | RPB_R0047 | - | 16 Met tRNA
|

4478622 | 4478696 | + | 75 | 86747127 | RPB_R0048 | - | 13 Val tRNA
|

4479137 | 4479222 | - | 86 | 86747127 | RPB_R0049 | - | 01 Gly tRNA
|

4685836 | 4685912 | - | 77 | 86747127 | RPB_R0050 | - | 16 Met tRNA
|

4820570 | 4820684 | - | 115 | 86747127 | RPB_R0051 | - | 5S ribosomal RNA |

4820799 | 4823628 | - | 2830 | 86747127 | RPB_R0052 | - | 23S ribosomal RNA |

4824027 | 4824102 | - | 76 | 86747127 | RPB_R0053 | - | 02 Ala tRNA
|

4824136 | 4824212 | - | 77 | 86747127 | RPB_R0054 | - | 14 Ile tRNA
|

4824444 | 4825909 | - | 1466 | 86747127 | RPB_R0055 | - | 16S ribosomal RNA |

4930083 | 4930158 | - | 76 | 86747127 | RPB_R0056 | - | 17 Phe tRNA
|

4941426 | 4941500 | + | 75 | 86747127 | RPB_R0057 | - | 12 Thr tRNA
|

5041326 | 5041400 | - | 75 | 86747127 | RPB_R0058 | - | 05 Gln tRNA
|

5102616 | 5102690 | - | 75 | 86747127 | RPB_R0059 | - | 13 Val tRNA
|

5262228 | 5262304 | + | 77 | 86747127 | RPB_R0060 | - | 11 Arg tRNA
|