Материалы:NC 008148

LOCUS NC_008148 3225748 bp DNA circular BCT 12-JUN-2006 DEFINITION Rubrobacter xylanophilus DSM 9941, complete genome. ACCESSION NC_008148 VERSION NC_008148.1 GI:108802856 KEYWORDS . SOURCE Rubrobacter xylanophilus DSM 9941 ORGANISM Rubrobacter xylanophilus DSM 9941 Bacteria; Actinobacteria; Rubrobacteridae; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter. REFERENCE 1 (bases 1 to 3225748) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., da Costa,M.S., Rainey,F.A., Empadinhas,N., Jolivet,E., Battista,J.R. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Rubrobacter xylanophilus DSM 9941 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3225748) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-JUN-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3225748) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., da Costa,M.S., Rainey,F.A., Empadinhas,N., Jolivet,E., Battista,J.R. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (07-JUN-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000386. URL -- http://www.jgi.doe.gov JGI Project ID: 3436081 Source DNA available from John R. Battista (jbattis@lsu.edu) Bacteria available from DSMZ: DSM 9941 Contacts: John R. Battista (jbattis@lsu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

11389 | 11749 | + | 361 | 108802856 | Rxyl_R0001 | - | RNaseP RNA |

15245 | 15317 | - | 73 | 108802856 | Rxyl_R0002 | - | 01 Gly tRNA
|

30643 | 30726 | + | 84 | 108802856 | Rxyl_R0003 | - | 15 Leu tRNA
|

298314 | 298455 | + | 142 | 108802856 | Rxyl_R0004 | - | |

371715 | 371785 | + | 71 | 108802856 | Rxyl_R0005 | - | 05 Gln tRNA
|

619467 | 619540 | - | 74 | 108802856 | Rxyl_R0006 | - | 11 Arg tRNA
|

663892 | 664074 | + | 183 | 108802856 | Rxyl_R0007 | - | |

780592 | 780681 | - | 90 | 108802856 | Rxyl_R0008 | - | 08 Ser tRNA
|

881920 | 882031 | - | 112 | 108802856 | Rxyl_R0009 | - | |

934242 | 934315 | + | 74 | 108802856 | Rxyl_R0010 | - | 05 Gln tRNA
|

955404 | 955477 | + | 74 | 108802856 | Rxyl_R0011 | - | 15 Leu tRNA
|

1024685 | 1024758 | + | 74 | 108802856 | Rxyl_R0012 | - | 03 Pro tRNA
|

1038628 | 1038702 | + | 75 | 108802856 | Rxyl_R0013 | - | 10 Lys tRNA
|

1038703 | 1038775 | + | 73 | 108802856 | Rxyl_R0014 | - | 04 Glu tRNA
|

1038792 | 1038863 | + | 72 | 108802856 | Rxyl_R0015 | - | 13 Val tRNA
|

1040076 | 1040149 | + | 74 | 108802856 | Rxyl_R0016 | - | 06 Asp tRNA
|

1040568 | 1040640 | + | 73 | 108802856 | Rxyl_R0017 | - | 17 Phe tRNA
|

1121068 | 1121189 | + | 122 | 108802856 | Rxyl_R0018 | - | |

1324076 | 1324148 | + | 73 | 108802856 | Rxyl_R0019 | - | 01 Gly tRNA
|

1324169 | 1324239 | + | 71 | 108802856 | Rxyl_R0020 | - | 19 Cys tRNA
|

1324262 | 1324333 | + | 72 | 108802856 | Rxyl_R0021 | - | 13 Val tRNA
|

1337366 | 1338878 | + | 1513 | 108802856 | Rxyl_R0022 | - | 16S ribosomal RNA |

1339144 | 1342143 | + | 3000 | 108802856 | Rxyl_R0023 | - | 23S ribosomal RNA |

1342229 | 1342345 | + | 117 | 108802856 | Rxyl_R0024 | - | 5S ribosomal RNA |

1391592 | 1391741 | + | 150 | 108802856 | Rxyl_R0025 | - | |

1521231 | 1521304 | - | 74 | 108802856 | Rxyl_R0026 | - | 16 Met tRNA
|

1521307 | 1521381 | - | 75 | 108802856 | Rxyl_R0027 | - | 07 Asn tRNA
|

1539823 | 1539895 | - | 73 | 108802856 | Rxyl_R0028 | - | 02 Ala tRNA
|

1556071 | 1556154 | - | 84 | 108802856 | Rxyl_R0029 | - | 15 Leu tRNA
|

1584674 | 1584746 | - | 73 | 108802856 | Rxyl_R0030 | - | 09 His tRNA
|

1616352 | 1616424 | - | 73 | 108802856 | Rxyl_R0031 | - | 11 Arg tRNA
|

1625329 | 1625399 | - | 71 | 108802856 | Rxyl_R0032 | - | 01 Gly tRNA
|

1625420 | 1625494 | - | 75 | 108802856 | Rxyl_R0033 | - | 03 Pro tRNA
|

1626431 | 1626790 | - | 360 | 108802856 | Rxyl_R0034 | - | tmRNA |

1947946 | 1948018 | - | 73 | 108802856 | Rxyl_R0035 | - | 12 Thr tRNA
|

2002611 | 2002699 | - | 89 | 108802856 | Rxyl_R0036 | - | Sec tRNA |

2024178 | 2024265 | + | 88 | 108802856 | Rxyl_R0037 | - | 15 Leu tRNA
|

2059938 | 2060021 | + | 84 | 108802856 | Rxyl_R0038 | - | 15 Leu tRNA
|

2112145 | 2112255 | + | 111 | 108802856 | Rxyl_R0039 | - | |

2184005 | 2184077 | - | 73 | 108802856 | Rxyl_R0040 | - | 20 Trp tRNA
|

2185578 | 2185651 | - | 74 | 108802856 | Rxyl_R0041 | - | 16 Met tRNA
|

2185683 | 2185755 | - | 73 | 108802856 | Rxyl_R0042 | - | 12 Thr tRNA
|

2185766 | 2185851 | - | 86 | 108802856 | Rxyl_R0043 | - | 18 Tyr tRNA
|

2185936 | 2186007 | - | 72 | 108802856 | Rxyl_R0044 | - | 12 Thr tRNA
|

2206288 | 2206361 | - | 74 | 108802856 | Rxyl_R0045 | - | 16 Met tRNA
|

2228976 | 2229050 | + | 75 | 108802856 | Rxyl_R0046 | - | 13 Val tRNA
|

2293628 | 2293700 | + | 73 | 108802856 | Rxyl_R0047 | - | 02 Ala tRNA
|

2295938 | 2296043 | + | 106 | 108802856 | Rxyl_R0048 | - | |

2304069 | 2304141 | - | 73 | 108802856 | Rxyl_R0049 | - | 11 Arg tRNA
|

2308212 | 2308285 | - | 74 | 108802856 | Rxyl_R0050 | - | 03 Pro tRNA
|

2406044 | 2406137 | + | 94 | 108802856 | Rxyl_R0051 | - | |

2455474 | 2455546 | - | 73 | 108802856 | Rxyl_R0052 | - | 02 Ala tRNA
|

2457560 | 2457662 | + | 103 | 108802856 | Rxyl_R0053 | - | SRP RNA; RNA component of signal recognition particle |

2476169 | 2476242 | - | 74 | 108802856 | Rxyl_R0054 | - | 14 Ile tRNA
|

2484065 | 2484294 | + | 230 | 108802856 | Rxyl_R0055 | - | |

2590390 | 2590480 | - | 91 | 108802856 | Rxyl_R0056 | - | 08 Ser tRNA
|

2605957 | 2606029 | + | 73 | 108802856 | Rxyl_R0057 | - | 11 Arg tRNA
|

2661013 | 2661085 | + | 73 | 108802856 | Rxyl_R0058 | - | 10 Lys tRNA
|

2670191 | 2670275 | - | 85 | 108802856 | Rxyl_R0059 | - | 08 Ser tRNA
|

2803867 | 2803972 | - | 106 | 108802856 | Rxyl_R0060 | - | |

2863858 | 2863933 | + | 76 | 108802856 | Rxyl_R0061 | - | 04 Glu tRNA
|

2875142 | 2875231 | - | 90 | 108802856 | Rxyl_R0062 | - | 08 Ser tRNA
|

3199881 | 3199953 | - | 73 | 108802856 | Rxyl_R0063 | - | |

3199954 | 3200053 | - | 100 | 108802856 | Rxyl_R0064 | - |