Материалы:NC 007333

LOCUS NC_007333 3642249 bp DNA circular BCT 16-AUG-2007 DEFINITION Thermobifida fusca YX, complete genome. ACCESSION NC_007333 VERSION NC_007333.1 GI:72160406 KEYWORDS . SOURCE Thermobifida fusca YX ORGANISM Thermobifida fusca YX Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptosporangineae; Nocardiopsaceae; Thermobifida. REFERENCE 1 (bases 1 to 3642249) AUTHORS Lykidis,A., Mavromatis,K., Ivanova,N., Anderson,I., Land,M., DiBartolo,G., Martinez,M., Lapidus,A., Lucas,S., Copeland,A., Richardson,P., Wilson,D.B. and Kyrpides,N. TITLE Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX JOURNAL J. Bacteriol. 189 (6), 2477-2486 (2007) PUBMED 17209016 REFERENCE 2 (bases 1 to 3642249) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (10-AUG-2005) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3642249) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Lykidis,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (25-JUL-2005) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000088. URL -- http://www.jgi.doe.gov Source DNA and bacteria available from David Wilson (dbw3@cornell.edu) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Contacts: Paul Richardson (microbes@cuba.jgi-psf.org) Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

12591 | 12664 | + | 74 | 72160406 | Tfu_R0001 | - | 14 Ile tRNA
|

32306 | 32393 | + | 88 | 72160406 | Tfu_R0002 | - | 08 Ser tRNA
|

57392 | 57483 | - | 92 | 72160406 | Tfu_R0003 | - | SRP RNA; RNA component of signal recognitionparticle |

57613 | 57697 | + | 85 | 72160406 | Tfu_R0004 | - | 08 Ser tRNA
|

106706 | 106795 | - | 90 | 72160406 | Tfu_R0005 | - | 08 Ser tRNA
|

128270 | 128346 | - | 77 | 72160406 | Tfu_R0006 | - | 03 Pro tRNA
|

243307 | 243382 | + | 76 | 72160406 | Tfu_R0007 | - | 12 Thr tRNA
|

413892 | 413967 | - | 76 | 72160406 | Tfu_R0008 | - | 11 Arg tRNA
|

423371 | 423444 | + | 74 | 72160406 | Tfu_R0009 | - | 02 Ala tRNA
|

465582 | 465653 | + | 72 | 72160406 | Tfu_R0010 | - | 05 Gln tRNA
|

489279 | 489352 | + | 74 | 72160406 | Tfu_R0011 | - | 15 Leu tRNA
|

616275 | 616351 | + | 77 | 72160406 | Tfu_R0012 | - | 16 Met tRNA
|

616612 | 616688 | + | 77 | 72160406 | Tfu_R0013 | - | 16 Met tRNA
|

726244 | 726315 | + | 72 | 72160406 | Tfu_R0014 | - | 05 Gln tRNA
|

726378 | 726450 | + | 73 | 72160406 | Tfu_R0015 | - | 04 Glu tRNA
|

726571 | 726646 | + | 76 | 72160406 | Tfu_R0016 | - | 04 Glu tRNA
|

1027508 | 1027583 | + | 76 | 72160406 | Tfu_R0017 | - | 07 Asn tRNA
|

1037549 | 1037625 | + | 77 | 72160406 | Tfu_R0018 | - | 16 Met tRNA
|

1377115 | 1377201 | - | 87 | 72160406 | Tfu_R0019 | - | 15 Leu tRNA
|

1443042 | 1443115 | - | 74 | 72160406 | Tfu_R0020 | - | 03 Pro tRNA
|

2284041 | 2284368 | - | 328 | 72160406 | Tfu_R0021 | - | RNA component of RNaseP |

2296780 | 2296853 | - | 74 | 72160406 | Tfu_R0022 | - | 13 Val tRNA
|

2386815 | 2386930 | - | 116 | 72160406 | Tfu_R0023 | - | 5S ribosomal RNA |

2387032 | 2390133 | - | 3102 | 72160406 | Tfu_R0024 | - | 23S ribosomal RNA |

2390559 | 2392029 | - | 1471 | 72160406 | Tfu_R0025 | - | 16S ribosomal RNA |

2471210 | 2471286 | - | 77 | 72160406 | Tfu_R0026 | - | 13 Val tRNA
|

2474102 | 2474177 | + | 76 | 72160406 | Tfu_R0027 | - | 01 Gly tRNA
|

2474212 | 2474284 | + | 73 | 72160406 | Tfu_R0028 | - | 01 Gly tRNA
|

2474311 | 2474385 | + | 75 | 72160406 | Tfu_R0029 | - | 13 Val tRNA
|

2476556 | 2476628 | + | 73 | 72160406 | Tfu_R0030 | - | 01 Gly tRNA
|

2476669 | 2476739 | + | 71 | 72160406 | Tfu_R0031 | - | 19 Cys tRNA
|

2476757 | 2476831 | + | 75 | 72160406 | Tfu_R0032 | - | 13 Val tRNA
|

2544226 | 2544298 | - | 73 | 72160406 | Tfu_R0033 | - | 02 Ala tRNA
|

2544721 | 2544793 | - | 73 | 72160406 | Tfu_R0034 | - | 02 Ala tRNA
|

2579506 | 2579583 | - | 78 | 72160406 | Tfu_R0035 | - | 03 Pro tRNA
|

2579691 | 2579761 | + | 71 | 72160406 | Tfu_R0036 | - | 01 Gly tRNA
|

2620594 | 2620669 | - | 76 | 72160406 | Tfu_R0037 | - | 11 Arg tRNA
|

2673862 | 2673934 | + | 73 | 72160406 | Tfu_R0038 | - | 09 His tRNA
|

2729672 | 2729747 | - | 76 | 72160406 | Tfu_R0039 | - | 10 Lys tRNA
|

2731568 | 2731643 | - | 76 | 72160406 | Tfu_R0040 | - | 10 Lys tRNA
|

2776923 | 2776998 | + | 76 | 72160406 | Tfu_R0041 | - | 15 Leu tRNA
|

2781709 | 2781824 | - | 116 | 72160406 | Tfu_R0042 | - | 5S ribosomal RNA |

2781926 | 2785027 | - | 3102 | 72160406 | Tfu_R0043 | - | 23S ribosomal RNA |

2785453 | 2786923 | - | 1471 | 72160406 | Tfu_R0044 | - | 16S ribosomal RNA |

2849594 | 2849668 | + | 75 | 72160406 | Tfu_R0045 | - | 11 Arg tRNA
|

2911968 | 2912337 | - | 370 | 72160406 | Tfu_R0046 | - | tmRNA |

3039071 | 3039186 | - | 116 | 72160406 | Tfu_R0047 | - | 5S ribosomal RNA |

3039288 | 3042389 | - | 3102 | 72160406 | Tfu_R0048 | - | 23S ribosomal RNA |

3042912 | 3044382 | - | 1471 | 72160406 | Tfu_R0049 | - | 16S ribosomal RNA |

3129045 | 3129120 | - | 76 | 72160406 | Tfu_R0050 | - | 20 Trp tRNA
|

3135409 | 3135484 | - | 76 | 72160406 | Tfu_R0051 | - | 16 Met tRNA
|

3135588 | 3135663 | - | 76 | 72160406 | Tfu_R0052 | - | 12 Thr tRNA
|

3144854 | 3144936 | - | 83 | 72160406 | Tfu_R0053 | - | 18 Tyr tRNA
|

3259061 | 3259134 | - | 74 | 72160406 | Tfu_R0054 | - | 12 Thr tRNA
|

3272883 | 3272968 | + | 86 | 72160406 | Tfu_R0055 | - | 15 Leu tRNA
|

3355836 | 3355908 | - | 73 | 72160406 | Tfu_R0056 | - | 17 Phe tRNA
|

3355937 | 3356011 | - | 75 | 72160406 | Tfu_R0057 | - | 06 Asp tRNA
|

3356132 | 3356204 | - | 73 | 72160406 | Tfu_R0058 | - | 04 Glu tRNA
|

3372207 | 3372282 | - | 76 | 72160406 | Tfu_R0059 | - | 10 Lys tRNA
|

3447314 | 3447387 | + | 74 | 72160406 | Tfu_R0060 | - | 01 Gly tRNA
|

3458625 | 3458697 | - | 73 | 72160406 | Tfu_R0061 | - | 11 Arg tRNA
|

3539236 | 3539327 | + | 92 | 72160406 | Tfu_R0062 | - | 08 Ser tRNA
|

3574916 | 3575001 | - | 86 | 72160406 | Tfu_R0063 | - | 15 Leu tRNA
|

3588493 | 3588565 | - | 73 | 72160406 | Tfu_R0064 | - | 02 Ala tRNA
|

3590712 | 3590827 | - | 116 | 72160406 | Tfu_R0065 | - | 5S ribosomal RNA |

3590929 | 3594030 | - | 3102 | 72160406 | Tfu_R0066 | - | 23S ribosomal RNA |

3594580 | 3596050 | - | 1471 | 72160406 | Tfu_R0067 | - | 16S ribosomal RNA |