Материалы:NC 009792

```
LOCUS NC_009792 4720462 bp DNA circular BCT 14-SEP-2007
DEFINITION Citrobacter koseri ATCC BAA-895, complete genome.
ACCESSION NC_009792
VERSION NC_009792.1 GI:157144296
KEYWORDS .
SOURCE Citrobacter koseri ATCC BAA-895
ORGANISM Citrobacter koseri ATCC BAA-895
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Citrobacter.
REFERENCE 1 (bases 1 to 4720462)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (13-SEP-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 2 (bases 1 to 4720462)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Latreille,P., Courtney,L., Pepin,K., Bhonagiri,V.,
Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Citrobacter koseri Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000822.
Citrobacter (diversus) koseri--Citrobacter cells are isolated from
water, sewage, soils, and food, as well as from the feces of man
and other animals, where they may be normal inhabitants. They can
be found in urine, sputum, and other clinical specimens. They can
sometimes be opportunistic pathogens particularly in
immunocompromised patients in hospitals or in infants (Pepperell et
al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
references therein).
The strain of Citrobacter koseri being sequenced, strain CDC
4225-83, was isolated in 1983 in Maryland, where it caused neonatal
meningitis. It was provided by Caroline Mohr and Melissa Campbell
of CDC. The strain is available from the American Type Culture
Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
Centre as SGSC4696. The genome was sequenced to 8X coverage, using
plasmid and fosmid libraries and was finished to an error rate of
less than 1 per 10,000 bases. Automated annotation was performed
and manual annotation will continue in the labs of Michael
McClelland and Kenneth Sanderson. The National Institute of Allergy
and Infectious Diseases (NIAID), National Institutes of Health
(NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data (i.e., phred quality >=30); an attempt was
made to resolve all sequencing problems, such as compressions and
repeats; all regions were covered by sequence from more than one
m13 subclone.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

93820 | 94351 | + | 532 | 157144296 | CKO_00097 | - | small subunit ribosomal RNA |

95422 | 95494 | + | 73 | 157144296 | CKO_00098 | - | 04 Glu tRNA
|

98685 | 98800 | + | 116 | 157144296 | CKO_00100 | - | 5S ribosomal RNA |

98854 | 98927 | + | 74 | 157144296 | CKO_00101 | - | 06 Asp tRNA
|

98939 | 99011 | + | 73 | 157144296 | CKO_00102 | - | 20 Trp tRNA
|

135992 | 136065 | + | 74 | 157144296 | CKO_00138 | - | 11 Arg tRNA
|

136123 | 136195 | + | 73 | 157144296 | CKO_00139 | - | 09 His tRNA
|

136218 | 136301 | + | 84 | 157144296 | CKO_00140 | - | 15 Leu tRNA
|

136348 | 136421 | + | 74 | 157144296 | CKO_00141 | - | 03 Pro tRNA
|

136745 | 136918 | + | 174 | 157144296 | CKO_00143 | - | SraJ RNA |

183783 | 184314 | + | 532 | 157144296 | CKO_00194 | - | small subunit ribosomal RNA |

185385 | 185457 | + | 73 | 157144296 | CKO_00195 | - | 04 Glu tRNA
|

185648 | 188554 | + | 2907 | 157144296 | CKO_05140 | - | 23S ribosomal RNA |

188754 | 188869 | + | 116 | 157144296 | CKO_00196 | - | 5S ribosomal RNA |

209092 | 209255 | + | 164 | 157144296 | CKO_00215 | - | rncO |

222308 | 222456 | - | 149 | 157144296 | CKO_00230 | - | tke1 RNA |

263515 | 263605 | + | 91 | 157144296 | CKO_00271 | - | SroE RNA |

374321 | 374393 | - | 73 | 157144296 | CKO_00392 | - | 10 Lys tRNA
|

374401 | 374473 | - | 73 | 157144296 | CKO_00393 | - | 13 Val tRNA
|

374523 | 374595 | - | 73 | 157144296 | CKO_00394 | - | 13 Val tRNA
|

374643 | 374715 | - | 73 | 157144296 | CKO_00395 | - | 13 Val tRNA
|

377442 | 377514 | + | 73 | 157144296 | CKO_00399 | - | 02 Ala tRNA
|

377557 | 377629 | + | 73 | 157144296 | CKO_00400 | - | 02 Ala tRNA
|

426990 | 427061 | - | 72 | 157144296 | CKO_00442 | - | 11 Arg tRNA
|

542543 | 542636 | - | 94 | 157144296 | CKO_00555 | - | MicF RNA |

566488 | 566561 | - | 74 | 157144296 | CKO_00585 | - | 03 Pro tRNA
|

674317 | 674401 | - | 85 | 157144296 | CKO_00700 | - | RyeE RNA |

687309 | 687454 | - | 146 | 157144296 | CKO_00708 | - | QUAD RNA |

800575 | 800647 | - | 73 | 157144296 | CKO_00836 | - | 07 Asn tRNA
|

802386 | 802458 | + | 73 | 157144296 | CKO_00838 | - | 07 Asn tRNA
|

953774 | 953846 | - | 73 | 157144296 | CKO_00954 | - | 07 Asn tRNA
|

956184 | 956256 | - | 73 | 157144296 | CKO_00957 | - | 07 Asn tRNA
|

957248 | 957334 | + | 87 | 157144296 | CKO_00959 | - | 08 Ser tRNA
|

984590 | 984673 | + | 84 | 157144296 | CKO_00989 | - | DsrA RNA |

1023182 | 1023254 | + | 73 | 157144296 | CKO_01035 | - | 01 Gly tRNA
|

1023310 | 1023380 | + | 71 | 157144296 | CKO_01036 | - | 19 Cys tRNA
|

1023396 | 1023479 | + | 84 | 157144296 | CKO_01037 | - | 15 Leu tRNA
|

1098835 | 1099086 | - | 252 | 157144296 | CKO_01129 | - | SraC/RyeA RNA |

1098949 | 1099048 | + | 100 | 157144296 | CKO_01128 | - | RyeB RNA |

1138324 | 1138409 | + | 86 | 157144296 | CKO_01176 | - | SroD RNA |

1277805 | 1277975 | - | 171 | 157144296 | CKO_01307 | - | RtT RNA |

1277986 | 1278067 | - | 82 | 157144296 | CKO_01308 | - | 18 Tyr tRNA
|

1278107 | 1278188 | - | 82 | 157144296 | CKO_01309 | - | 18 Tyr tRNA
|

1336961 | 1337033 | + | 73 | 157144296 | CKO_01376 | - | 12 Thr tRNA
|

1369954 | 1370028 | + | 75 | 157144296 | CKO_01416 | - | C0343 RNA |

1374933 | 1375056 | + | 124 | 157144296 | CKO_01424 | - | MicC RNA |

1404801 | 1404864 | - | 64 | 157144296 | CKO_01453 | - | RydC RNA |

1612447 | 1612520 | + | 74 | 157144296 | CKO_01680 | - | 13 Val tRNA
|

1612528 | 1612601 | + | 74 | 157144296 | CKO_01681 | - | 13 Val tRNA
|

1650169 | 1650276 | + | 108 | 157144296 | CKO_01724 | - | RprA RNA |

1727130 | 1727213 | + | 84 | 157144296 | CKO_01819 | - | RyhB RNA |

1737545 | 1737628 | + | 84 | 157144296 | CKO_01831 | - | RyhB RNA |

1839505 | 1839672 | - | 168 | 157144296 | CKO_01971 | - | SraB RNA |

1889176 | 1889260 | + | 85 | 157144296 | CKO_02038 | - | 08 Ser tRNA
|

1937270 | 1937354 | - | 85 | 157144296 | CKO_02094 | - | 08 Ser tRNA
|

2036117 | 2036201 | + | 85 | 157144296 | CKO_02195 | - | 08 Ser tRNA
|

2095842 | 2095920 | + | 79 | 157144296 | CKO_02261 | - | RybB RNA |

2217689 | 2217761 | - | 73 | 157144296 | CKO_02392 | - | 10 Lys tRNA
|

2217897 | 2217969 | - | 73 | 157144296 | CKO_02393 | - | 10 Lys tRNA
|

2218118 | 2218190 | - | 73 | 157144296 | CKO_02394 | - | 10 Lys tRNA
|

2218197 | 2218269 | - | 73 | 157144296 | CKO_02395 | - | 13 Val tRNA
|

2218309 | 2218381 | - | 73 | 157144296 | CKO_02396 | - | 10 Lys tRNA
|

2307417 | 2307490 | + | 74 | 157144296 | CKO_02492 | - | 16 Met tRNA
|

2307502 | 2307583 | + | 82 | 157144296 | CKO_02493 | - | 15 Leu tRNA
|

2307610 | 2307681 | + | 72 | 157144296 | CKO_02494 | - | 05 Gln tRNA
|

2307721 | 2307792 | + | 72 | 157144296 | CKO_02495 | - | 05 Gln tRNA
|

2307812 | 2307885 | + | 74 | 157144296 | CKO_02497 | - | 16 Met tRNA
|

2307895 | 2307966 | + | 72 | 157144296 | CKO_02498 | - | 05 Gln tRNA
|

2308012 | 2308083 | + | 72 | 157144296 | CKO_02499 | - | 05 Gln tRNA
|

2316478 | 2316640 | + | 163 | 157144296 | CKO_02508 | - | SroC RNA |

2423929 | 2424002 | - | 74 | 157144296 | CKO_02617 | - | 11 Arg tRNA
|

2470084 | 2470164 | - | 81 | 157144296 | CKO_02667 | - | SroB RNA |

2504936 | 2505033 | - | 98 | 157144296 | CKO_02703 | - | bacterial signal recognition particle RNA |

2733973 | 2734045 | - | 73 | 157144296 | CKO_02951 | - | 12 Thr tRNA
|

2749265 | 2749338 | - | 74 | 157144296 | CKO_02967 | - | 06 Asp tRNA
|

2757586 | 2757659 | - | 74 | 157144296 | CKO_02977 | - | 06 Asp tRNA
|

2757713 | 2757828 | - | 116 | 157144296 | CKO_02978 | - | 5S ribosomal RNA |

2761018 | 2761090 | - | 73 | 157144296 | CKO_02980 | - | 04 Glu tRNA
|

2762161 | 2762692 | - | 532 | 157144296 | CKO_02981 | - | small subunit ribosomal RNA |

2791690 | 2791762 | - | 73 | 157144296 | CKO_03012 | - | 12 Thr tRNA
|

2791771 | 2791842 | - | 72 | 157144296 | CKO_03013 | - | 01 Gly tRNA
|

2791963 | 2792044 | - | 82 | 157144296 | CKO_03014 | - | 18 Tyr tRNA
|

2792056 | 2792128 | - | 73 | 157144296 | CKO_03015 | - | 12 Thr tRNA
|

2795660 | 2795775 | - | 116 | 157144296 | CKO_03020 | - | 5S ribosomal RNA |

2799061 | 2799133 | - | 73 | 157144296 | CKO_03021 | - | 02 Ala tRNA
|

2799250 | 2799323 | - | 74 | 157144296 | CKO_03022 | - | 14 Ile tRNA
|

2800379 | 2800910 | - | 532 | 157144296 | CKO_03023 | - | small subunit ribosomal RNA |

2809327 | 2809437 | + | 111 | 157144296 | CKO_03033 | - | OxyS RNA |

2917339 | 2917592 | - | 254 | 157144296 | CKO_03148 | - | CsrC RNA family |

2918742 | 2918860 | - | 119 | 157144296 | CKO_03150 | - | Spot 42 RNA |

2926347 | 2926462 | - | 116 | 157144296 | CKO_03160 | - | 5S ribosomal RNA |

2929640 | 2929712 | - | 73 | 157144296 | CKO_03162 | - | 02 Ala tRNA
|

2929829 | 2929902 | - | 74 | 157144296 | CKO_03163 | - | 14 Ile tRNA
|

2930958 | 2931489 | - | 532 | 157144296 | CKO_03164 | - | small subunit ribosomal RNA |

2964474 | 2964612 | - | 139 | 157144296 | CKO_03200 | - | t44 RNA |

3076986 | 3077058 | - | 73 | 157144296 | CKO_03310 | - | SgrS RNA |

3192511 | 3192594 | + | 84 | 157144296 | CKO_03424 | - | 15 Leu tRNA
|

3192625 | 3192708 | + | 84 | 157144296 | CKO_03425 | - | 15 Leu tRNA
|

3192744 | 3192827 | + | 84 | 157144296 | CKO_03426 | - | 15 Leu tRNA
|

3291775 | 3291856 | - | 82 | 157144296 | CKO_03533 | - | 15 Leu tRNA
|

3411306 | 3411378 | - | 73 | 157144296 | CKO_03670 | - | 01 Gly tRNA
|

3411450 | 3411522 | - | 73 | 157144296 | CKO_03671 | - | 01 Gly tRNA
|

3440370 | 3440442 | + | 73 | 157144296 | CKO_03702 | - | 17 Phe tRNA
|

3641465 | 3641580 | - | 116 | 157144296 | CKO_03910 | - | 5S ribosomal RNA |

3644877 | 3644949 | - | 73 | 157144296 | CKO_03912 | - | 04 Glu tRNA
|

3646020 | 3646551 | - | 532 | 157144296 | CKO_03913 | - | small subunit ribosomal RNA |

3672983 | 3673344 | + | 362 | 157144296 | CKO_03943 | - | tmRNA |

3757395 | 3757469 | + | 75 | 157144296 | CKO_04037 | - | SraD RNA |

3760367 | 3760440 | - | 74 | 157144296 | CKO_04042 | - | 11 Arg tRNA
|

3760637 | 3760710 | - | 74 | 157144296 | CKO_04043 | - | 11 Arg tRNA
|

3760907 | 3760980 | - | 74 | 157144296 | CKO_04044 | - | 11 Arg tRNA
|

3761046 | 3761119 | - | 74 | 157144296 | CKO_04045 | - | 11 Arg tRNA
|

3761126 | 3761215 | - | 90 | 157144296 | CKO_04046 | - | 08 Ser tRNA
|

3858998 | 3859356 | - | 359 | 157144296 | CKO_04148 | - | CsrB/RsmB RNA family |

3877663 | 3877809 | + | 147 | 157144296 | CKO_04172 | - | GcvB RNA |

3882291 | 3882364 | + | 74 | 157144296 | CKO_04179 | - | 16 Met tRNA
|

3882519 | 3882592 | + | 74 | 157144296 | CKO_04180 | - | 16 Met tRNA
|

3882747 | 3882820 | + | 74 | 157144296 | CKO_04181 | - | 16 Met tRNA
|

3911803 | 3911889 | - | 87 | 157144296 | CKO_04209 | - | SraE/RygA/RygB family RNA |

3912005 | 3912088 | - | 84 | 157144296 | CKO_04210 | - | SraE/RygA/RygB family RNA |

3940652 | 3940722 | - | 71 | 157144296 | CKO_04248 | - | 01 Gly tRNA
|

3964871 | 3965054 | + | 184 | 157144296 | CKO_04276 | - | 6S / SsrS RNA |

4023512 | 4023584 | + | 73 | 157144296 | CKO_04343 | - | 17 Phe tRNA
|

4133781 | 4133853 | + | 73 | 157144296 | CKO_04468 | - | 16 Met tRNA
|

4181245 | 4181547 | - | 303 | 157144296 | CKO_04520 | - | RNA component of RNase P |

4216423 | 4216593 | + | 171 | 157144296 | CKO_04563 | - | SraG RNA |

4223487 | 4223560 | - | 74 | 157144296 | CKO_04572 | - | 16 Met tRNA
|

4225459 | 4225542 | - | 84 | 157144296 | CKO_04575 | - | 15 Leu tRNA
|

4253942 | 4254049 | + | 108 | 157144296 | CKO_04613 | - | SraH RNA |

4321864 | 4321979 | - | 116 | 157144296 | CKO_04685 | - | 5S ribosomal RNA |

4322023 | 4322095 | - | 73 | 157144296 | CKO_04686 | - | 12 Thr tRNA
|

4322110 | 4322225 | - | 116 | 157144296 | CKO_04687 | - | 5S ribosomal RNA |

4325415 | 4325487 | - | 73 | 157144296 | CKO_04689 | - | 04 Glu tRNA
|

4326558 | 4327089 | - | 532 | 157144296 | CKO_04690 | - | small subunit ribosomal RNA |

4466850 | 4466932 | - | 83 | 157144296 | CKO_04860 | - | RyhB RNA |

4587553 | 4587626 | - | 74 | 157144296 | CKO_04995 | - | 03 Pro tRNA
|