Материалы:NC 008044

LOCUS NC_008044 3200938 bp DNA circular BCT 24-MAY-2006 DEFINITION Silicibacter sp. TM1040, complete genome. ACCESSION NC_008044 VERSION NC_008044.1 GI:99079841 KEYWORDS . SOURCE Silicibacter sp. TM1040 ORGANISM Silicibacter sp. TM1040 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Silicibacter. REFERENCE 1 (bases 1 to 3200938) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Goodwin,L., Thompson,L.S., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Belas,R., Moran,M.A., Buchan,A., Gonzalez,J.M., Schell,M.A., Sun,F. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Silicibacter sp. TM1040 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3200938) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-MAY-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3200938) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Goodwin,L., Thompson,L.S., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Belas,R., Moran,M.A., Buchan,A., Gonzalez,J.M., Schell,M.A., Sun,F. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (11-MAY-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000377. URL -- http://www.jgi.doe.gov JGI Project ID: 3634501 Source DNA and bacteria available from Mary Ann Moran (mmoran@uga.edu) Contacts: Mary Ann Moran (mmoran@uga.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Comments: Re: Chromosome Location:3038240, unresolved hard GC stop; Finkit used with two different primers failed to go through this hard stop, hairpin not identified, therefore potentially missing bases here. COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

133517 | 133591 | - | 75 | 99079841 | TM1040_R0001 | - | 13 Val tRNA
|

144962 | 146416 | + | 1455 | 99079841 | TM1040_R0002 | - | 16S ribosomal RNA |

146556 | 146632 | + | 77 | 99079841 | TM1040_R0003 | - | 14 Ile tRNA
|

146698 | 146773 | + | 76 | 99079841 | TM1040_R0004 | - | 02 Ala tRNA
|

147318 | 150161 | + | 2844 | 99079841 | TM1040_R0005 | - | 23S ribosomal RNA |

150399 | 150513 | + | 115 | 99079841 | TM1040_R0006 | - | 5S ribosomal RNA |

150565 | 150641 | + | 77 | 99079841 | TM1040_R0007 | - | 16 Met tRNA
|

185651 | 185750 | + | 100 | 99079841 | TM1040_R0008 | - | SRP RNA; RNA component of signal recognition particle |

322763 | 322839 | + | 77 | 99079841 | TM1040_R0009 | - | 11 Arg tRNA
|

452000 | 452076 | - | 77 | 99079841 | TM1040_R0010 | - | 16 Met tRNA
|

572500 | 572574 | + | 75 | 99079841 | TM1040_R0011 | - | 05 Gln tRNA
|

832030 | 832104 | + | 75 | 99079841 | TM1040_R0012 | - | 13 Val tRNA
|

909925 | 910000 | + | 76 | 99079841 | TM1040_R0013 | - | 13 Val tRNA
|

910354 | 910430 | + | 77 | 99079841 | TM1040_R0014 | - | 06 Asp tRNA
|

910513 | 910589 | + | 77 | 99079841 | TM1040_R0015 | - | 06 Asp tRNA
|

910673 | 910749 | + | 77 | 99079841 | TM1040_R0016 | - | 06 Asp tRNA
|

972863 | 972939 | - | 77 | 99079841 | TM1040_R0017 | - | 03 Pro tRNA
|

1051685 | 1051759 | - | 75 | 99079841 | TM1040_R0018 | - | 07 Asn tRNA
|

1237578 | 1237654 | + | 77 | 99079841 | TM1040_R0019 | - | 03 Pro tRNA
|

1257137 | 1257222 | + | 86 | 99079841 | TM1040_R0020 | - | 15 Leu tRNA
|

1289648 | 1289737 | - | 90 | 99079841 | TM1040_R0021 | - | 08 Ser tRNA
|

1307059 | 1307135 | - | 77 | 99079841 | TM1040_R0022 | - | 11 Arg tRNA
|

1415927 | 1416011 | - | 85 | 99079841 | TM1040_R0023 | - | 15 Leu tRNA
|

1416226 | 1416299 | + | 74 | 99079841 | TM1040_R0024 | - | 01 Gly tRNA
|

1534030 | 1534119 | - | 90 | 99079841 | TM1040_R0025 | - | 08 Ser tRNA
|

1546191 | 1546526 | + | 336 | 99079841 | TM1040_R0026 | - | tmRNA |

1579604 | 1579679 | + | 76 | 99079841 | TM1040_R0027 | - | 16 Met tRNA
|

1582218 | 1582292 | + | 75 | 99079841 | TM1040_R0028 | - | 07 Asn tRNA
|

1788222 | 1788305 | - | 84 | 99079841 | TM1040_R0029 | - | 15 Leu tRNA
|

1846712 | 1846785 | - | 74 | 99079841 | TM1040_R0030 | - | 19 Cys tRNA
|

1934839 | 1934912 | - | 74 | 99079841 | TM1040_R0031 | - | 01 Gly tRNA
|

2017485 | 2017717 | - | 233 | 99079841 | TM1040_R0032 | - | RNA component of RNaseP |

2139444 | 2139518 | + | 75 | 99079841 | TM1040_R0033 | - | 01 Gly tRNA
|

2139710 | 2139784 | + | 75 | 99079841 | TM1040_R0034 | - | 01 Gly tRNA
|

2139963 | 2140037 | + | 75 | 99079841 | TM1040_R0035 | - | 01 Gly tRNA
|

2152949 | 2153032 | - | 84 | 99079841 | TM1040_R0036 | - | Xaa tRNA |

2156715 | 2156837 | + | 123 | 99079841 | TM1040_R0037 | - | |

2225464 | 2225540 | - | 77 | 99079841 | TM1040_R0038 | - | 09 His tRNA
|

2277500 | 2277574 | + | 75 | 99079841 | TM1040_R0039 | - | 04 Glu tRNA
|

2277789 | 2277863 | + | 75 | 99079841 | TM1040_R0040 | - | 04 Glu tRNA
|

2517265 | 2517340 | - | 76 | 99079841 | TM1040_R0041 | - | |

2517342 | 2517447 | - | 106 | 99079841 | TM1040_R0042 | - | |

2575693 | 2575768 | + | 76 | 99079841 | TM1040_R0043 | - | 20 Trp tRNA
|

2576175 | 2576264 | + | 90 | 99079841 | TM1040_R0044 | - | 08 Ser tRNA
|

2638185 | 2638319 | + | 135 | 99079841 | TM1040_R0045 | - | |

2821104 | 2821181 | - | 78 | 99079841 | TM1040_R0046 | - | 11 Arg tRNA
|

2972614 | 2972689 | - | 76 | 99079841 | TM1040_R0047 | - | 10 Lys tRNA
|

2982627 | 2982731 | - | 105 | 99079841 | TM1040_R0048 | - | |

2984411 | 2984497 | - | 87 | 99079841 | TM1040_R0049 | - | 15 Leu tRNA
|

2984654 | 2984740 | - | 87 | 99079841 | TM1040_R0050 | - | 15 Leu tRNA
|

2994766 | 2994841 | + | 76 | 99079841 | TM1040_R0051 | - | 12 Thr tRNA
|