Материалы:NC 009512

LOCUS NC_009512 5959964 bp DNA circular BCT 02-JUL-2007 DEFINITION Pseudomonas putida F1, complete genome. ACCESSION NC_009512 VERSION NC_009512.1 GI:148545259 KEYWORDS . SOURCE Pseudomonas putida F1 ORGANISM Pseudomonas putida F1 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 5959964) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Parales,R. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Pseudomonas putida F1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5959964) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-JUN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5959964) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Parales,R. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (25-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000712. URL -- http://www.jgi.doe.gov JGI Project ID: 4000373 Source DNA and bacteria available from Rebecca Parales (reparales@ucdavis.edu) Contacts: Rebecca Parales (reparales@ucdavis.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

185124 | 186672 | + | 1549 | 148545259 | Pput_R0001 | - | 16S ribosomal RNA |

186953 | 189855 | + | 2903 | 148545259 | Pput_R0002 | - | 23S ribosomal RNA |

189979 | 190094 | + | 116 | 148545259 | Pput_R0003 | - | 5S ribosomal RNA |

190204 | 190319 | + | 116 | 148545259 | Pput_R0004 | - | 5S ribosomal RNA |

265864 | 265940 | - | 77 | 148545259 | Pput_R0005 | - | 11 Arg tRNA
|

338834 | 338909 | - | 76 | 148545259 | Pput_R0006 | - | 12 Thr tRNA
|

348720 | 348795 | - | 76 | 148545259 | Pput_R0007 | - | 17 Phe tRNA
|

482039 | 482115 | - | 77 | 148545259 | Pput_R0008 | - | 16 Met tRNA
|

539837 | 541385 | + | 1549 | 148545259 | Pput_R0009 | - | 16S ribosomal RNA |

541451 | 541527 | + | 77 | 148545259 | Pput_R0010 | - | 14 Ile tRNA
|

541534 | 541609 | + | 76 | 148545259 | Pput_R0011 | - | 02 Ala tRNA
|

541844 | 544746 | + | 2903 | 148545259 | Pput_R0012 | - | 23S ribosomal RNA |

544881 | 544996 | + | 116 | 148545259 | Pput_R0013 | - | 5S ribosomal RNA |

547462 | 547545 | + | 84 | 148545259 | Pput_R0014 | - | 18 Tyr tRNA
|

547570 | 547643 | + | 74 | 148545259 | Pput_R0015 | - | 01 Gly tRNA
|

547673 | 547748 | + | 76 | 148545259 | Pput_R0016 | - | 12 Thr tRNA
|

549075 | 549150 | + | 76 | 148545259 | Pput_R0017 | - | 20 Trp tRNA
|

717166 | 718714 | + | 1549 | 148545259 | Pput_R0018 | - | 16S ribosomal RNA |

718995 | 721897 | + | 2903 | 148545259 | Pput_R0019 | - | 23S ribosomal RNA |

722033 | 722148 | + | 116 | 148545259 | Pput_R0020 | - | 5S ribosomal RNA |

752653 | 752728 | + | 76 | 148545259 | Pput_R0021 | - | 07 Asn tRNA
|

752733 | 752809 | + | 77 | 148545259 | Pput_R0022 | - | 03 Pro tRNA
|

752815 | 752890 | + | 76 | 148545259 | Pput_R0023 | - | 10 Lys tRNA
|

752937 | 753013 | + | 77 | 148545259 | Pput_R0024 | - | 03 Pro tRNA
|

753019 | 753094 | + | 76 | 148545259 | Pput_R0025 | - | 10 Lys tRNA
|

760664 | 760739 | + | 76 | 148545259 | Pput_R0026 | - | 12 Thr tRNA
|

768920 | 768991 | - | 72 | 148545259 | Pput_R0027 | - | Xaa tRNA |

820486 | 820562 | - | 77 | 148545259 | Pput_R0028 | - | 16 Met tRNA
|

848700 | 848774 | - | 75 | 148545259 | Pput_R0029 | - | 05 Gln tRNA
|

983562 | 983646 | - | 85 | 148545259 | Pput_R0030 | - | 15 Leu tRNA
|

1342813 | 1344361 | + | 1549 | 148545259 | Pput_R0031 | - | 16S ribosomal RNA |

1344427 | 1344503 | + | 77 | 148545259 | Pput_R0032 | - | 14 Ile tRNA
|

1344510 | 1344585 | + | 76 | 148545259 | Pput_R0033 | - | 02 Ala tRNA
|

1344820 | 1347722 | + | 2903 | 148545259 | Pput_R0034 | - | 23S ribosomal RNA |

1347857 | 1347972 | + | 116 | 148545259 | Pput_R0035 | - | 5S ribosomal RNA |

1398184 | 1398260 | - | 77 | 148545259 | Pput_R0036 | - | 16 Met tRNA
|

1398395 | 1398471 | - | 77 | 148545259 | Pput_R0037 | - | 16 Met tRNA
|

1398606 | 1398682 | - | 77 | 148545259 | Pput_R0038 | - | 16 Met tRNA
|

1420230 | 1420305 | + | 76 | 148545259 | Pput_R0039 | - | 10 Lys tRNA
|

1437688 | 1437777 | + | 90 | 148545259 | Pput_R0040 | - | 08 Ser tRNA
|

1620544 | 1620634 | + | 91 | 148545259 | Pput_R0041 | - | 08 Ser tRNA
|

1620741 | 1620817 | + | 77 | 148545259 | Pput_R0042 | - | 11 Arg tRNA
|

1620890 | 1620966 | + | 77 | 148545259 | Pput_R0043 | - | 11 Arg tRNA
|

1621041 | 1621117 | + | 77 | 148545259 | Pput_R0044 | - | 11 Arg tRNA
|

1621191 | 1621267 | + | 77 | 148545259 | Pput_R0045 | - | 11 Arg tRNA
|

1624589 | 1624665 | + | 77 | 148545259 | Pput_R0046 | - | 11 Arg tRNA
|

1786688 | 1786804 | + | 117 | 148545259 | Pput_R0047 | - | SRP RNA; RNA component of signal recognition particle |

2022122 | 2022197 | + | 76 | 148545259 | Pput_R0048 | - | 01 Gly tRNA
|

2113660 | 2113747 | + | 88 | 148545259 | Pput_R0049 | - | 08 Ser tRNA
|

2188877 | 2188950 | + | 74 | 148545259 | Pput_R0050 | - | 19 Cys tRNA
|

2206571 | 2206655 | - | 85 | 148545259 | Pput_R0051 | - | 15 Leu tRNA
|

3630810 | 3630886 | - | 77 | 148545259 | Pput_R0052 | - | 03 Pro tRNA
|

3654686 | 3654762 | - | 77 | 148545259 | Pput_R0053 | - | 13 Val tRNA
|

3654935 | 3655011 | - | 77 | 148545259 | Pput_R0054 | - | 13 Val tRNA
|

3766514 | 3766588 | - | 75 | 148545259 | Pput_R0055 | - | 05 Gln tRNA
|

3877213 | 3877288 | - | 76 | 148545259 | Pput_R0056 | - | 09 His tRNA
|

3877325 | 3877409 | - | 85 | 148545259 | Pput_R0057 | - | 15 Leu tRNA
|

3877462 | 3877537 | - | 76 | 148545259 | Pput_R0058 | - | 09 His tRNA
|

3877579 | 3877655 | - | 77 | 148545259 | Pput_R0059 | - | 11 Arg tRNA
|

3909594 | 3909720 | - | 127 | 148545259 | Pput_R0060 | - | 5S ribosomal RNA |

3909834 | 3912738 | - | 2905 | 148545259 | Pput_R0061 | - | 23S ribosomal RNA |

3912980 | 3913055 | - | 76 | 148545259 | Pput_R0062 | - | 02 Ala tRNA
|

3913080 | 3913156 | - | 77 | 148545259 | Pput_R0063 | - | 14 Ile tRNA
|

3913241 | 3914778 | - | 1538 | 148545259 | Pput_R0064 | - | 16S ribosomal RNA |

4043269 | 4043345 | + | 77 | 148545259 | Pput_R0065 | - | 03 Pro tRNA
|

4213351 | 4213427 | - | 77 | 148545259 | Pput_R0066 | - | 06 Asp tRNA
|

4213569 | 4213645 | - | 77 | 148545259 | Pput_R0067 | - | 06 Asp tRNA
|

4213745 | 4213821 | - | 77 | 148545259 | Pput_R0068 | - | 06 Asp tRNA
|

4213887 | 4213962 | - | 76 | 148545259 | Pput_R0069 | - | 13 Val tRNA
|

4242338 | 4242413 | - | 76 | 148545259 | Pput_R0070 | - | 04 Glu tRNA
|

4242456 | 4242531 | - | 76 | 148545259 | Pput_R0071 | - | 02 Ala tRNA
|

4242593 | 4242668 | - | 76 | 148545259 | Pput_R0072 | - | 04 Glu tRNA
|

4242711 | 4242786 | - | 76 | 148545259 | Pput_R0073 | - | 02 Ala tRNA
|

4242838 | 4242913 | - | 76 | 148545259 | Pput_R0074 | - | 04 Glu tRNA
|

4242986 | 4243061 | - | 76 | 148545259 | Pput_R0075 | - | 02 Ala tRNA
|

4251314 | 4251389 | + | 76 | 148545259 | Pput_R0076 | - | 07 Asn tRNA
|

4316361 | 4316436 | - | 76 | 148545259 | Pput_R0077 | - | 01 Gly tRNA
|

4316522 | 4316597 | - | 76 | 148545259 | Pput_R0078 | - | 01 Gly tRNA
|

4316601 | 4316676 | - | 76 | 148545259 | Pput_R0079 | - | 04 Glu tRNA
|

4316769 | 4316844 | - | 76 | 148545259 | Pput_R0080 | - | 01 Gly tRNA
|

4316847 | 4316922 | - | 76 | 148545259 | Pput_R0081 | - | 04 Glu tRNA
|

4347692 | 4347781 | - | 90 | 148545259 | Pput_R0082 | - | 08 Ser tRNA
|

4531511 | 4531587 | - | 77 | 148545259 | Pput_R0083 | - | 06 Asp tRNA
|

4531601 | 4531676 | - | 76 | 148545259 | Pput_R0084 | - | 13 Val tRNA
|

4531847 | 4531923 | - | 77 | 148545259 | Pput_R0085 | - | 06 Asp tRNA
|

4531937 | 4532012 | - | 76 | 148545259 | Pput_R0086 | - | 13 Val tRNA
|

4825075 | 4825148 | + | 74 | 148545259 | Pput_R0087 | - | 01 Gly tRNA
|

4918882 | 4919176 | - | 295 | 148545259 | Pput_R0088 | - | RNA component of RNaseP |

5071220 | 5071346 | - | 127 | 148545259 | Pput_R0089 | - | 5S ribosomal RNA |

5071460 | 5074364 | - | 2905 | 148545259 | Pput_R0090 | - | 23S ribosomal RNA |

5074606 | 5074681 | - | 76 | 148545259 | Pput_R0091 | - | 02 Ala tRNA
|

5074706 | 5074782 | - | 77 | 148545259 | Pput_R0092 | - | 14 Ile tRNA
|

5074867 | 5076404 | - | 1538 | 148545259 | Pput_R0093 | - | 16S ribosomal RNA |

5124893 | 5124969 | - | 77 | 148545259 | Pput_R0094 | - | 16 Met tRNA
|

5125070 | 5125155 | - | 86 | 148545259 | Pput_R0095 | - | 15 Leu tRNA
|

5154291 | 5154679 | + | 389 | 148545259 | Pput_R0096 | - | tmRNA |

5331494 | 5331580 | + | 87 | 148545259 | Pput_R0097 | - | 15 Leu tRNA
|

5331669 | 5331755 | + | 87 | 148545259 | Pput_R0098 | - | 15 Leu tRNA
|