Материалы:NC 002967

```
LOCUS NC_002967 2843201 bp DNA circular BCT 26-JAN-2007
DEFINITION Treponema denticola ATCC 35405, complete genome.
ACCESSION NC_002967
VERSION NC_002967.9 GI:42516522
KEYWORDS .
SOURCE Treponema denticola ATCC 35405
ORGANISM Treponema denticola ATCC 35405
Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.
REFERENCE 1 (bases 1 to 2843201)
AUTHORS Seshadri,R., Myers,G.S., Tettelin,H., Eisen,J.A., Heidelberg,J.F.,
Dodson,R.J., Davidsen,T.M., DeBoy,R.T., Fouts,D.E., Haft,D.H.,
Selengut,J., Ren,Q., Brinkac,L.M., Madupu,R., Kolonay,J.,
Durkin,S.A., Daugherty,S.C., Shetty,J., Shvartsbeyn,A.,
Gebregeorgis,E., Geer,K., Tsegaye,G., Malek,J., Ayodeji,B.,
Shatsman,S., McLeod,M.P., Smajs,D., Howell,J.K., Pal,S., Amin,A.,
Vashisth,P., McNeill,T.Z., Xiang,Q., Sodergren,E., Baca,E.,
Weinstock,G.M., Norris,S.J., Fraser,C.M. and Paulsen,I.T.
TITLE Comparison of the genome of the oral pathogen Treponema denticola
with other spirochete genomes
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (15), 5646-5651 (2004)
PUBMED 15064399
REFERENCE 2 (bases 1 to 2843201)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (11-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2843201)
AUTHORS Seshadri,R., Myers,G.S., Tettelin,H., Eisen,J.A., Heidelberg,J.F.,
Dodson,R.J., Davidsen,T.M., DeBoy,R.T., Fouts,D.E., Haft,D.H.,
Selengut,J., Ren,Q., Brinkac,L.M., Madupu,R., Kolonay,J.F.,
Durkin,A.S., Daugherty,S.C., Shetty,J., Shvartsbeyn,A.,
Gebregeorgis,E., Geer,K., Tsegaye,G., Malek,J.A., Ayodeji,B.,
Shatsman,S., McLeod,M.P., Majs,D., Howell,J.K., Pal,S., Amin,A.,
Vashisth,P., McNeill,T.Z., Weinstock,G.M., Norris,S.J., Fraser,C.M.
and Paulsen,I.T.
TITLE Direct Submission
JOURNAL Submitted (29-JAN-2004) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE017226.
On Feb 10, 2004 this sequence version replaced gi:41584505.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

31732 | 31803 | + | 72 | 42516522 | TDE_tRNA-Cys-1 | - | 19 Cys tRNA
|

246212 | 246562 | - | 351 | 42516522 | TDE_tmRNA | - | 10Sa RNA |

250688 | 250774 | - | 87 | 42516522 | TDE_tRNA-Ser-1 | - | 08 Ser tRNA
|

250822 | 250906 | - | 85 | 42516522 | TDE_tRNA-Pseudo-1 | - | |

250948 | 251021 | - | 74 | 42516522 | TDE_tRNA-Arg-1 | - | 11 Arg tRNA
|

251033 | 251119 | - | 87 | 42516522 | TDE_tRNA-Pseudo-2 | - | |

251146 | 251230 | - | 85 | 42516522 | TDE_tRNA-Ser-2 | - | 08 Ser tRNA
|

610211 | 611726 | + | 1516 | 42516522 | TDE_16SA | - | 16S ribosomal RNA |

611869 | 611942 | + | 74 | 42516522 | TDE_tRNA-Ala-1 | - | 02 Ala tRNA
|

612128 | 615037 | + | 2910 | 42516522 | TDE_23SA | - | 23S ribosomal RNA |

615208 | 615318 | + | 111 | 42516522 | TDE_5SA | - | 5S ribosomal RNA |

684725 | 684797 | + | 73 | 42516522 | TDE_tRNA-Ala-2 | - | 02 Ala tRNA
|

884545 | 884626 | + | 82 | 42516522 | TDE_tRNA-Leu-1 | - | 15 Leu tRNA
|

1018212 | 1018287 | - | 76 | 42516522 | TDE_tRNA-Asn-1 | - | 07 Asn tRNA
|

1090480 | 1090567 | + | 88 | 42516522 | TDE_tRNA-SeC(p)-1 | - | Sec tRNA |

1202619 | 1202691 | - | 73 | 42516522 | TDE_tRNA-Met-1 | - | 16 Met tRNA
|

1219839 | 1221354 | + | 1516 | 42516522 | TDE_16SB | - | 16S ribosomal RNA |

1221484 | 1221557 | + | 74 | 42516522 | TDE_tRNA-Ile-1 | - | 14 Ile tRNA
|

1221739 | 1224648 | + | 2910 | 42516522 | TDE_23SB | - | 23S ribosomal RNA |

1224812 | 1224922 | + | 111 | 42516522 | TDE_5SB | - | 5S ribosomal RNA |

1376314 | 1376386 | + | 73 | 42516522 | TDE_tRNA-Gln-1 | - | 05 Gln tRNA
|

1388132 | 1388457 | + | 326 | 42516522 | TDE_rnpB | - | RNase P RNA component |

1395627 | 1395699 | - | 73 | 42516522 | TDE_tRNA-Met-2 | - | 16 Met tRNA
|

1551533 | 1551604 | + | 72 | 42516522 | TDE_tRNA-Glu-1 | - | 04 Glu tRNA
|

1584328 | 1584402 | + | 75 | 42516522 | TDE_tRNA-Thr-1 | - | 12 Thr tRNA
|

1584409 | 1584490 | + | 82 | 42516522 | TDE_tRNA-Tyr-1 | - | 18 Tyr tRNA
|

1680012 | 1680084 | - | 73 | 42516522 | TDE_tRNA-Thr-2 | - | 12 Thr tRNA
|

1724782 | 1724864 | + | 83 | 42516522 | TDE_tRNA-Leu-2 | - | 15 Leu tRNA
|

1724894 | 1724965 | + | 72 | 42516522 | TDE_tRNA-Gly-1 | - | 01 Gly tRNA
|

1789641 | 1789713 | + | 73 | 42516522 | TDE_tRNA-Phe-1 | - | 17 Phe tRNA
|

1795537 | 1795619 | + | 83 | 42516522 | TDE_tRNA-Leu-3 | - | 15 Leu tRNA
|

1797908 | 1797981 | - | 74 | 42516522 | TDE_tRNA-Pro-1 | - | 03 Pro tRNA
|

1807238 | 1807311 | + | 74 | 42516522 | TDE_tRNA-Val-1 | - | 13 Val tRNA
|

1943843 | 1943914 | + | 72 | 42516522 | TDE_tRNA-Gly-2 | - | 01 Gly tRNA
|

1949078 | 1949151 | - | 74 | 42516522 | TDE_tRNA-Arg-2 | - | 11 Arg tRNA
|

1960253 | 1960326 | - | 74 | 42516522 | TDE_tRNA-Arg-3 | - | 11 Arg tRNA
|

1960359 | 1960430 | - | 72 | 42516522 | TDE_tRNA-His-1 | - | 09 His tRNA
|

2058210 | 2058296 | + | 87 | 42516522 | TDE_tRNA-Leu-4 | - | 15 Leu tRNA
|

2079695 | 2079768 | + | 74 | 42516522 | TDE_tRNA-Val-2 | - | 13 Val tRNA
|

2346434 | 2346506 | + | 73 | 42516522 | TDE_tRNA-Pro-2 | - | 03 Pro tRNA
|

2346520 | 2346596 | + | 77 | 42516522 | TDE_tRNA-Arg-4 | - | 11 Arg tRNA
|

2354124 | 2354197 | + | 74 | 42516522 | TDE_tRNA-Met-3 | - | 16 Met tRNA
|

2456096 | 2456168 | - | 73 | 42516522 | TDE_tRNA-Trp-1 | - | 20 Trp tRNA
|

2456424 | 2456496 | - | 73 | 42516522 | TDE_tRNA-Thr-3 | - | 12 Thr tRNA
|

2555330 | 2555402 | - | 73 | 42516522 | TDE_tRNA-Lys-1 | - | 10 Lys tRNA
|

2616226 | 2616297 | - | 72 | 42516522 | TDE_tRNA-Pro-3 | - | 03 Pro tRNA
|

2616352 | 2616426 | - | 75 | 42516522 | TDE_tRNA-Asp-1 | - | 06 Asp tRNA
|

2623417 | 2623499 | - | 83 | 42516522 | TDE_tRNA-Leu-5 | - | 15 Leu tRNA
|

2682138 | 2682210 | - | 73 | 42516522 | TDE_tRNA-Lys-2 | - | 10 Lys tRNA
|

2807414 | 2807486 | + | 73 | 42516522 | TDE_tRNA-Ala-3 | - | 02 Ala tRNA
|

2836733 | 2836803 | + | 71 | 42516522 | TDE_tRNA-Gln-2 | - | 05 Gln tRNA
|

2836822 | 2836893 | + | 72 | 42516522 | TDE_tRNA-Glu-2 | - | 04 Glu tRNA
|