Материалы:NC 007969

LOCUS NC_007969 3059876 bp DNA circular BCT 20-APR-2006 DEFINITION Psychrobacter cryohalolentis K5, complete genome. ACCESSION NC_007969 VERSION NC_007969.1 GI:93004831 KEYWORDS . SOURCE Psychrobacter cryohalolentis K5 ORGANISM Psychrobacter cryohalolentis K5 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Psychrobacter. REFERENCE 1 (bases 1 to 3059876) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Sims,D.R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Psychrobacter cryohalolentis K5 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3059876) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-APR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3059876) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Sims,D.R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (30-MAR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000323. URL -- http://www.jgi.doe.gov JGI Project ID: 3635662 Source DNA and bacteria available from Jim Tiedje (tiedjej@pilot.msu.edu) Contacts: Jim Tiedje (tiedjej@pilot.msu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

81553 | 81637 | + | 85 | 93004831 | Pcryo_R0001 | - | 15 Leu tRNA
|

81762 | 81838 | + | 77 | 93004831 | Pcryo_R0002 | - | 16 Met tRNA
|

109242 | 109365 | - | 124 | 93004831 | Pcryo_R0003 | - | |

210869 | 210958 | + | 90 | 93004831 | Pcryo_R0004 | - | 08 Ser tRNA
|

211142 | 211218 | + | 77 | 93004831 | Pcryo_R0005 | - | 11 Arg tRNA
|

216675 | 216750 | - | 76 | 93004831 | Pcryo_R0006 | - | 05 Gln tRNA
|

216993 | 217068 | - | 76 | 93004831 | Pcryo_R0007 | - | 05 Gln tRNA
|

299721 | 299797 | + | 77 | 93004831 | Pcryo_R0008 | - | 03 Pro tRNA
|

299890 | 299966 | + | 77 | 93004831 | Pcryo_R0009 | - | 11 Arg tRNA
|

300007 | 300082 | + | 76 | 93004831 | Pcryo_R0010 | - | 09 His tRNA
|

441130 | 441428 | + | 299 | 93004831 | Pcryo_R0011 | - | RNA component of RNaseP |

441620 | 441696 | + | 77 | 93004831 | Pcryo_R0012 | - | 16 Met tRNA
|

518349 | 518424 | + | 76 | 93004831 | Pcryo_R0013 | - | 12 Thr tRNA
|

518492 | 518575 | + | 84 | 93004831 | Pcryo_R0014 | - | 18 Tyr tRNA
|

518661 | 518734 | + | 74 | 93004831 | Pcryo_R0015 | - | 01 Gly tRNA
|

518852 | 518926 | + | 75 | 93004831 | Pcryo_R0016 | - | 12 Thr tRNA
|

562629 | 562705 | - | 77 | 93004831 | Pcryo_R0017 | - | 11 Arg tRNA
|

582651 | 582727 | - | 77 | 93004831 | Pcryo_R0018 | - | 03 Pro tRNA
|

651956 | 653541 | + | 1586 | 93004831 | Pcryo_R0019 | - | 16S ribosomal RNA |

653627 | 653703 | + | 77 | 93004831 | Pcryo_R0020 | - | 14 Ile tRNA
|

653710 | 653785 | + | 76 | 93004831 | Pcryo_R0021 | - | 02 Ala tRNA
|

654165 | 656929 | + | 2765 | 93004831 | Pcryo_R0022 | - | 23S ribosomal RNA |

657208 | 657321 | + | 114 | 93004831 | Pcryo_R0023 | - | 5S ribosomal RNA |

665781 | 665856 | - | 76 | 93004831 | Pcryo_R0024 | - | 10 Lys tRNA
|

666076 | 666151 | - | 76 | 93004831 | Pcryo_R0025 | - | 10 Lys tRNA
|

825220 | 825295 | + | 76 | 93004831 | Pcryo_R0026 | - | 13 Val tRNA
|

825361 | 825437 | + | 77 | 93004831 | Pcryo_R0027 | - | 06 Asp tRNA
|

855715 | 855790 | - | 76 | 93004831 | Pcryo_R0028 | - | 07 Asn tRNA
|

951452 | 951585 | - | 134 | 93004831 | Pcryo_R0029 | - | |

951647 | 951784 | - | 138 | 93004831 | Pcryo_R0030 | - | |

1149807 | 1149881 | - | 75 | 93004831 | Pcryo_R0031 | - | 01 Gly tRNA
|

1186717 | 1186793 | - | 77 | 93004831 | Pcryo_R0032 | - | 16 Met tRNA
|

1565759 | 1565834 | - | 76 | 93004831 | Pcryo_R0033 | - | 11 Arg tRNA
|

1769323 | 1769436 | - | 114 | 93004831 | Pcryo_R0034 | - | SRP RNA; RNA component of signal recognition particle |

1887509 | 1887595 | + | 87 | 93004831 | Pcryo_R0035 | - | 15 Leu tRNA
|

1969140 | 1969213 | + | 74 | 93004831 | Pcryo_R0036 | - | 19 Cys tRNA
|

1969339 | 1969425 | + | 87 | 93004831 | Pcryo_R0037 | - | 15 Leu tRNA
|

2008296 | 2008654 | - | 359 | 93004831 | Pcryo_R0038 | - | tmRNA |

2127379 | 2127463 | + | 85 | 93004831 | Pcryo_R0039 | - | 15 Leu tRNA
|

2148132 | 2148207 | + | 76 | 93004831 | Pcryo_R0040 | - | 13 Val tRNA
|

2148273 | 2148349 | + | 77 | 93004831 | Pcryo_R0041 | - | 06 Asp tRNA
|

2181888 | 2181964 | + | 77 | 93004831 | Pcryo_R0042 | - | 13 Val tRNA
|

2270834 | 2270909 | + | 76 | 93004831 | Pcryo_R0043 | - | 07 Asn tRNA
|

2272452 | 2272542 | - | 91 | 93004831 | Pcryo_R0044 | - | 08 Ser tRNA
|

2306189 | 2306264 | + | 76 | 93004831 | Pcryo_R0045 | - | 04 Glu tRNA
|

2531014 | 2531088 | - | 75 | 93004831 | Pcryo_R0046 | - | 01 Gly tRNA
|

2683541 | 2683616 | - | 76 | 93004831 | Pcryo_R0047 | - | 20 Trp tRNA
|

2773998 | 2774111 | - | 114 | 93004831 | Pcryo_R0048 | - | 5S ribosomal RNA |

2774390 | 2777154 | - | 2765 | 93004831 | Pcryo_R0049 | - | 23S ribosomal RNA |

2777534 | 2777609 | - | 76 | 93004831 | Pcryo_R0050 | - | 02 Ala tRNA
|

2777616 | 2777692 | - | 77 | 93004831 | Pcryo_R0051 | - | 14 Ile tRNA
|

2777778 | 2779363 | - | 1586 | 93004831 | Pcryo_R0052 | - | 16S ribosomal RNA |

2882146 | 2882236 | + | 91 | 93004831 | Pcryo_R0053 | - | 08 Ser tRNA
|

2930427 | 2930502 | + | 76 | 93004831 | Pcryo_R0054 | - | 02 Ala tRNA
|

2930660 | 2930735 | + | 76 | 93004831 | Pcryo_R0055 | - | 04 Glu tRNA
|

2974304 | 2974417 | - | 114 | 93004831 | Pcryo_R0056 | - | 5S ribosomal RNA |

2974696 | 2977460 | - | 2765 | 93004831 | Pcryo_R0057 | - | 23S ribosomal RNA |

2977840 | 2977915 | - | 76 | 93004831 | Pcryo_R0058 | - | 02 Ala tRNA
|

2977922 | 2977998 | - | 77 | 93004831 | Pcryo_R0059 | - | 14 Ile tRNA
|

2978084 | 2979669 | - | 1586 | 93004831 | Pcryo_R0060 | - | 16S ribosomal RNA |

2980427 | 2980540 | - | 114 | 93004831 | Pcryo_R0061 | - | 5S ribosomal RNA |

2980819 | 2983583 | - | 2765 | 93004831 | Pcryo_R0062 | - | 23S ribosomal RNA |

2983963 | 2984038 | - | 76 | 93004831 | Pcryo_R0063 | - | 02 Ala tRNA
|

2984045 | 2984121 | - | 77 | 93004831 | Pcryo_R0064 | - | 14 Ile tRNA
|

2984207 | 2985792 | - | 1586 | 93004831 | Pcryo_R0065 | - | 16S ribosomal RNA |

3019385 | 3019460 | + | 76 | 93004831 | Pcryo_R0066 | - | 17 Phe tRNA
|