Материалы:NC 009720

LOCUS NC_009720 5308934 bp DNA circular BCT 05-SEP-2007 DEFINITION Xanthobacter autotrophicus Py2, complete genome. ACCESSION NC_009720 VERSION NC_009720.1 GI:154243958 KEYWORDS . SOURCE Xanthobacter autotrophicus Py2 ORGANISM Xanthobacter autotrophicus Py2 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter. REFERENCE 1 (bases 1 to 5308934) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Brainard,J., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Ensigns,S.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Xanthobacter autotrophicus Py2 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5308934) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (31-JUL-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5308934) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Brainard,J., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Ensigns,S.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (25-JUL-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000781. URL -- http://www.jgi.doe.gov JGI Project ID: 4000362 Source DNA and bacteria available from Scott A. Ensigns (ensigns@cc.usu.edu) Contacts: Scott A. Ensigns (ensigns@cc.usu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

219524 | 219613 | + | 90 | 154243958 | Xaut_R0001 | - | 08 Ser tRNA
|

280011 | 280086 | - | 76 | 154243958 | Xaut_R0002 | - | 04 Glu tRNA
|

433413 | 433489 | - | 77 | 154243958 | Xaut_R0003 | - | 16 Met tRNA
|

587540 | 587616 | + | 77 | 154243958 | Xaut_R0004 | - | 11 Arg tRNA
|

736313 | 736404 | - | 92 | 154243958 | Xaut_R0005 | - | Sec tRNA |

1013945 | 1015422 | + | 1478 | 154243958 | Xaut_R0006 | - | 16S ribosomal RNA |

1015608 | 1015684 | + | 77 | 154243958 | Xaut_R0007 | - | 14 Ile tRNA
|

1015777 | 1015852 | + | 76 | 154243958 | Xaut_R0008 | - | 02 Ala tRNA
|

1016239 | 1019068 | + | 2830 | 154243958 | Xaut_R0009 | - | 23S ribosomal RNA |

1019153 | 1019266 | + | 114 | 154243958 | Xaut_R0010 | - | 5S ribosomal RNA |

1272852 | 1272927 | - | 76 | 154243958 | Xaut_R0011 | - | 02 Ala tRNA
|

1283240 | 1283315 | + | 76 | 154243958 | Xaut_R0012 | - | 02 Ala tRNA
|

1283392 | 1283467 | + | 76 | 154243958 | Xaut_R0013 | - | 02 Ala tRNA
|

1530074 | 1530149 | + | 76 | 154243958 | Xaut_R0014 | - | 10 Lys tRNA
|

1821675 | 1821741 | - | 67 | 154243958 | Xaut_R0015 | - | 08 Ser tRNA
|

1936017 | 1936103 | - | 87 | 154243958 | Xaut_R0016 | - | 15 Leu tRNA
|

1989364 | 1989695 | + | 332 | 154243958 | Xaut_R0017 | - | RNA component of RNaseP |

2150387 | 2151864 | + | 1478 | 154243958 | Xaut_R0018 | - | 16S ribosomal RNA |

2152050 | 2152126 | + | 77 | 154243958 | Xaut_R0019 | - | 14 Ile tRNA
|

2152219 | 2152294 | + | 76 | 154243958 | Xaut_R0020 | - | 02 Ala tRNA
|

2152681 | 2155510 | + | 2830 | 154243958 | Xaut_R0021 | - | 23S ribosomal RNA |

2155595 | 2155708 | + | 114 | 154243958 | Xaut_R0022 | - | 5S ribosomal RNA |

2430461 | 2430562 | - | 102 | 154243958 | Xaut_R0023 | - | SRP RNA; RNA component of signal recognition particle |

2494497 | 2494573 | + | 77 | 154243958 | Xaut_R0024 | - | 11 Arg tRNA
|

2568867 | 2568941 | + | 75 | 154243958 | Xaut_R0025 | - | 01 Gly tRNA
|

2776973 | 2777047 | - | 75 | 154243958 | Xaut_R0026 | - | 05 Gln tRNA
|

2942657 | 2942746 | + | 90 | 154243958 | Xaut_R0027 | - | 08 Ser tRNA
|

3137146 | 3137220 | - | 75 | 154243958 | Xaut_R0028 | - | 13 Val tRNA
|

3180210 | 3180286 | + | 77 | 154243958 | Xaut_R0029 | - | 11 Arg tRNA
|

3265765 | 3265839 | - | 75 | 154243958 | Xaut_R0030 | - | 12 Thr tRNA
|

3566432 | 3566506 | - | 75 | 154243958 | Xaut_R0031 | - | 13 Val tRNA
|

3623908 | 3623981 | + | 74 | 154243958 | Xaut_R0032 | - | 05 Gln tRNA
|

3678595 | 3678681 | + | 87 | 154243958 | Xaut_R0033 | - | 15 Leu tRNA
|

3682382 | 3682457 | - | 76 | 154243958 | Xaut_R0034 | - | 12 Thr tRNA
|

3732374 | 3732448 | - | 75 | 154243958 | Xaut_R0035 | - | 12 Thr tRNA
|

3735976 | 3736060 | + | 85 | 154243958 | Xaut_R0036 | - | 18 Tyr tRNA
|

3736441 | 3736514 | + | 74 | 154243958 | Xaut_R0037 | - | 01 Gly tRNA
|

3739072 | 3739148 | + | 77 | 154243958 | Xaut_R0038 | - | 20 Trp tRNA
|

3833627 | 3833702 | - | 76 | 154243958 | Xaut_R0039 | - | 16 Met tRNA
|

3866355 | 3866429 | - | 75 | 154243958 | Xaut_R0040 | - | 01 Gly tRNA
|

4013682 | 4013766 | + | 85 | 154243958 | Xaut_R0041 | - | 15 Leu tRNA
|

4021550 | 4021625 | + | 76 | 154243958 | Xaut_R0042 | - | 13 Val tRNA
|

4021933 | 4022009 | + | 77 | 154243958 | Xaut_R0043 | - | 06 Asp tRNA
|

4044275 | 4044349 | + | 75 | 154243958 | Xaut_R0044 | - | 20 Trp tRNA
|

4151450 | 4151523 | + | 74 | 154243958 | Xaut_R0045 | - | 08 Ser tRNA
|

4206419 | 4206510 | + | 92 | 154243958 | Xaut_R0046 | - | 08 Ser tRNA
|

4500625 | 4500701 | - | 77 | 154243958 | Xaut_R0047 | - | 09 His tRNA
|

4520431 | 4520515 | + | 85 | 154243958 | Xaut_R0048 | - | 15 Leu tRNA
|

4585071 | 4585147 | + | 77 | 154243958 | Xaut_R0049 | - | 03 Pro tRNA
|

4619775 | 4619849 | - | 75 | 154243958 | Xaut_R0050 | - | 04 Glu tRNA
|

4626767 | 4626843 | + | 77 | 154243958 | Xaut_R0051 | - | 03 Pro tRNA
|

4627954 | 4628030 | + | 77 | 154243958 | Xaut_R0052 | - | 11 Arg tRNA
|

4690306 | 4690381 | - | 76 | 154243958 | Xaut_R0053 | - | 07 Asn tRNA
|

4692607 | 4692680 | - | 74 | 154243958 | Xaut_R0054 | - | 19 Cys tRNA
|

4795355 | 4795444 | - | 90 | 154243958 | Xaut_R0055 | - | 08 Ser tRNA
|

4841804 | 4841879 | - | 76 | 154243958 | Xaut_R0056 | - | 10 Lys tRNA
|

4865618 | 4865695 | + | 78 | 154243958 | Xaut_R0057 | - | 03 Pro tRNA
|

5053633 | 5053709 | + | 77 | 154243958 | Xaut_R0058 | - | 16 Met tRNA
|

5204921 | 5204996 | - | 76 | 154243958 | Xaut_R0059 | - | 17 Phe tRNA
|