Материалы:NC 008751

LOCUS NC_008751 3462887 bp DNA circular BCT 14-AUG-2007 DEFINITION Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome. ACCESSION NC_008751 VERSION NC_008751.1 GI:120601051 KEYWORDS . SOURCE Desulfovibrio vulgaris subsp. vulgaris DP4 ORGANISM Desulfovibrio vulgaris subsp. vulgaris DP4 Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio. REFERENCE 1 (bases 1 to 3462887) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Walker,C. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome 1 of Desulfovibrio vulgaris subsp. vulgaris DP4 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3462887) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-JAN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3462887) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Walker,C. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (19-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000527. URL -- http://www.jgi.doe.gov JGI Project ID: 4001787 Source DNA and bacteria available from Christopher Walker (cbwalkdr@u.washington.edu) Contacts: Christopher Walker (cbwalkdr@u.washington.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

99713 | 99789 | + | 77 | 120601051 | Dvul_R0001 | - | 11 Arg tRNA
|

158223 | 158298 | - | 76 | 120601051 | Dvul_R0002 | - | 09 His tRNA
|

169323 | 169398 | + | 76 | 120601051 | Dvul_R0003 | - | 17 Phe tRNA
|

304756 | 304831 | + | 76 | 120601051 | Dvul_R0004 | - | 13 Val tRNA
|

340180 | 341720 | + | 1541 | 120601051 | Dvul_R0005 | - | 16S ribosomal RNA |

341793 | 341869 | + | 77 | 120601051 | Dvul_R0006 | - | 14 Ile tRNA
|

341892 | 341967 | + | 76 | 120601051 | Dvul_R0007 | - | 02 Ala tRNA
|

342116 | 345055 | + | 2940 | 120601051 | Dvul_R0008 | - | 23S ribosomal RNA |

345146 | 345268 | + | 123 | 120601051 | Dvul_R0009 | - | 5S ribosomal RNA |

428376 | 428452 | - | 77 | 120601051 | Dvul_R0010 | - | 03 Pro tRNA
|

530198 | 530275 | - | 78 | 120601051 | Dvul_R0011 | - | 04 Glu tRNA
|

530293 | 530367 | - | 75 | 120601051 | Dvul_R0012 | - | 05 Gln tRNA
|

571338 | 571414 | - | 77 | 120601051 | Dvul_R0013 | - | 20 Trp tRNA
|

572833 | 572908 | - | 76 | 120601051 | Dvul_R0014 | - | 12 Thr tRNA
|

572945 | 573021 | - | 77 | 120601051 | Dvul_R0015 | - | 01 Gly tRNA
|

573079 | 573164 | - | 86 | 120601051 | Dvul_R0016 | - | 18 Tyr tRNA
|

573171 | 573246 | - | 76 | 120601051 | Dvul_R0017 | - | 12 Thr tRNA
|

614527 | 614603 | + | 77 | 120601051 | Dvul_R0018 | - | 11 Arg tRNA
|

724000 | 724086 | + | 87 | 120601051 | Dvul_R0019 | - | 15 Leu tRNA
|

826078 | 827618 | + | 1541 | 120601051 | Dvul_R0021 | - | 16S ribosomal RNA |

827691 | 827767 | + | 77 | 120601051 | Dvul_R0022 | - | 14 Ile tRNA
|

827790 | 827865 | + | 76 | 120601051 | Dvul_R0023 | - | 02 Ala tRNA
|

828015 | 830954 | + | 2940 | 120601051 | Dvul_R0024 | - | 23S ribosomal RNA |

831045 | 831167 | + | 123 | 120601051 | Dvul_R0025 | - | 5S ribosomal RNA |

832606 | 832692 | + | 87 | 120601051 | Dvul_R0026 | - | 15 Leu tRNA
|

872408 | 872482 | + | 75 | 120601051 | Dvul_R0027 | - | 13 Val tRNA
|

959374 | 960914 | + | 1541 | 120601051 | Dvul_R0028 | - | 16S ribosomal RNA |

960987 | 961063 | + | 77 | 120601051 | Dvul_R0029 | - | 14 Ile tRNA
|

961086 | 961161 | + | 76 | 120601051 | Dvul_R0030 | - | 02 Ala tRNA
|

961311 | 964250 | + | 2940 | 120601051 | Dvul_R0031 | - | 23S ribosomal RNA |

964341 | 964463 | + | 123 | 120601051 | Dvul_R0032 | - | 5S ribosomal RNA |

964494 | 964621 | + | 128 | 120601051 | Dvul_R0032a | - | 5S ribosomal RNA |

1030027 | 1030102 | - | 76 | 120601051 | Dvul_R0033 | - | 07 Asn tRNA
|

1093409 | 1093484 | - | 76 | 120601051 | Dvul_R0034 | - | 07 Asn tRNA
|

1210600 | 1210675 | - | 76 | 120601051 | Dvul_R0035 | - | 02 Ala tRNA
|

1262777 | 1262851 | - | 75 | 120601051 | Dvul_R0036 | - | 01 Gly tRNA
|

1272781 | 1272857 | - | 77 | 120601051 | Dvul_R0037 | - | Xaa tRNA |

1316062 | 1316136 | - | 75 | 120601051 | Dvul_R0038 | - | 01 Gly tRNA
|

1316169 | 1316243 | - | 75 | 120601051 | Dvul_R0039 | - | 01 Gly tRNA
|

1316251 | 1316325 | - | 75 | 120601051 | Dvul_R0040 | - | 19 Cys tRNA
|

1316337 | 1316411 | - | 75 | 120601051 | Dvul_R0041 | - | 01 Gly tRNA
|

1403157 | 1403234 | - | 78 | 120601051 | Dvul_R0042 | - | 03 Pro tRNA
|

1437492 | 1437568 | + | 77 | 120601051 | Dvul_R0043 | - | 16 Met tRNA
|

1450414 | 1450500 | - | 87 | 120601051 | Dvul_R0044 | - | 15 Leu tRNA
|

1597791 | 1598139 | - | 349 | 120601051 | Dvul_R0045 | - | tmRNA |

1697485 | 1697561 | - | 77 | 120601051 | Dvul_R0046 | - | 11 Arg tRNA
|

1712385 | 1712471 | + | 87 | 120601051 | Dvul_R0047 | - | 15 Leu tRNA
|

1728025 | 1728101 | + | 77 | 120601051 | Dvul_R0048 | - | 16 Met tRNA
|

1744636 | 1744712 | + | 77 | 120601051 | Dvul_R0049 | - | 03 Pro tRNA
|

1848102 | 1848177 | + | 76 | 120601051 | Dvul_R0050 | - | 05 Gln tRNA
|

1857954 | 1858030 | + | 77 | 120601051 | Dvul_R0051 | - | 11 Arg tRNA
|

1858063 | 1858139 | + | 77 | 120601051 | Dvul_R0052 | - | 11 Arg tRNA
|

1858159 | 1858235 | + | 77 | 120601051 | Dvul_R0053 | - | 11 Arg tRNA
|

1902414 | 1902508 | + | 95 | 120601051 | Dvul_R0054 | - | 08 Ser tRNA
|

1922798 | 1922873 | + | 76 | 120601051 | Dvul_R0055 | - | 16 Met tRNA
|

1924840 | 1925140 | + | 301 | 120601051 | Dvul_R0056 | - | RNaseP RNA |

2047938 | 2048022 | - | 85 | 120601051 | Dvul_R0057 | - | 15 Leu tRNA
|

2088048 | 2088137 | + | 90 | 120601051 | Dvul_R0058 | - | Sec tRNA |

2212198 | 2212273 | - | 76 | 120601051 | Dvul_R0059 | - | 12 Thr tRNA
|

2322537 | 2322612 | + | 76 | 120601051 | Dvul_R0060 | - | 10 Lys tRNA
|

2322804 | 2322879 | + | 76 | 120601051 | Dvul_R0061 | - | 10 Lys tRNA
|

2504953 | 2505047 | + | 95 | 120601051 | Dvul_R0062 | - | 08 Ser tRNA
|

2536797 | 2536888 | + | 92 | 120601051 | Dvul_R0063 | - | 08 Ser tRNA
|

2536919 | 2537007 | + | 89 | 120601051 | Dvul_R0064 | - | SRP RNA; RNA component of signal recognition particle |

2638747 | 2638838 | - | 92 | 120601051 | Dvul_R0065 | - | 08 Ser tRNA
|

2705208 | 2705284 | - | 77 | 120601051 | Dvul_R0066 | - | 04 Glu tRNA
|

2741825 | 2741901 | + | 77 | 120601051 | Dvul_R0067 | - | 04 Glu tRNA
|

2897373 | 2897459 | + | 87 | 120601051 | Dvul_R0068 | - | 15 Leu tRNA
|

3051249 | 3051325 | - | 77 | 120601051 | Dvul_R0069 | - | 16 Met tRNA
|

3061254 | 3061329 | + | 76 | 120601051 | Dvul_R0070 | - | 12 Thr tRNA
|

3149494 | 3149570 | - | 77 | 120601051 | Dvul_R0071 | - | 06 Asp tRNA
|

3149642 | 3149718 | - | 77 | 120601051 | Dvul_R0072 | - | 06 Asp tRNA
|

3149722 | 3149797 | - | 76 | 120601051 | Dvul_R0073 | - | 13 Val tRNA
|

3168605 | 3168727 | - | 123 | 120601051 | Dvul_R0074 | - | 5S ribosomal RNA |

3168818 | 3171757 | - | 2940 | 120601051 | Dvul_R0075 | - | 23S ribosomal RNA |

3171905 | 3171980 | - | 76 | 120601051 | Dvul_R0076 | - | 02 Ala tRNA
|

3172003 | 3172079 | - | 77 | 120601051 | Dvul_R0077 | - | 14 Ile tRNA
|

3172154 | 3173694 | - | 1541 | 120601051 | Dvul_R0078 | - | 16S ribosomal RNA |

3197980 | 3198055 | + | 76 | 120601051 | Dvul_R0079 | - | 10 Lys tRNA
|

3276288 | 3276374 | + | 87 | 120601051 | Dvul_R0080 | - | 15 Leu tRNA
|

3355199 | 3355321 | - | 123 | 120601051 | Dvul_R0081 | - | 5S ribosomal RNA |

3355412 | 3358351 | - | 2940 | 120601051 | Dvul_R0082 | - | 23S ribosomal RNA |

3358499 | 3358574 | - | 76 | 120601051 | Dvul_R0083 | - | 02 Ala tRNA
|

3358597 | 3358673 | - | 77 | 120601051 | Dvul_R0084 | - | 14 Ile tRNA
|

3358748 | 3360288 | - | 1541 | 120601051 | Dvul_R0085 | - | 16S ribosomal RNA |

3444040 | 3444115 | - | 76 | 120601051 | Dvul_R0086 | - | 02 Ala tRNA
|

3454190 | 3454265 | - | 76 | 120601051 | Dvul_R0087 | - | 02 Ala tRNA
|