Материалы:NC 008347

LOCUS NC_008347 3368780 bp DNA circular BCT 16-SEP-2006 DEFINITION Maricaulis maris MCS10, complete genome. ACCESSION NC_008347 VERSION NC_008347.1 GI:114568554 KEYWORDS . SOURCE Maricaulis maris MCS10 ORGANISM Maricaulis maris MCS10 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis. REFERENCE 1 (bases 1 to 3368780) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Viollier,P., Stephens,C. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Maricaulis maris MCS10 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3368780) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-SEP-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3368780) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Viollier,P., Stephens,C. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (25-AUG-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000449. URL -- http://www.jgi.doe.gov JGI Project ID: 4001624 Source DNA and bacteria available from Craig Stephens (cstephens@csu.edu) Contacts: Craig Stephens (cstephens@csu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

47339 | 47414 | + | 76 | 114568554 | Mmar10_R0001 | - | 12 Thr tRNA
|

55321 | 55396 | + | 76 | 114568554 | Mmar10_R0002 | - | 02 Ala tRNA
|

64184 | 64260 | - | 77 | 114568554 | Mmar10_R0003 | - | 11 Arg tRNA
|

104892 | 104967 | + | 76 | 114568554 | Mmar10_R0004 | - | 02 Ala tRNA
|

115309 | 115395 | - | 87 | 114568554 | Mmar10_R0005 | - | 15 Leu tRNA
|

157822 | 157911 | + | 90 | 114568554 | Mmar10_R0006 | - | 08 Ser tRNA
|

512364 | 512464 | - | 101 | 114568554 | Mmar10_R0007 | - | SRP RNA; RNA component of signal recognition particle |

540399 | 540475 | + | 77 | 114568554 | Mmar10_R0008 | - | 11 Arg tRNA
|

584429 | 584502 | + | 74 | 114568554 | Mmar10_R0009 | - | 01 Gly tRNA
|

815140 | 815216 | + | 77 | 114568554 | Mmar10_R0010 | - | 16 Met tRNA
|

962062 | 962138 | - | 77 | 114568554 | Mmar10_R0011 | - | 03 Pro tRNA
|

962376 | 962450 | + | 75 | 114568554 | Mmar10_R0012 | - | 05 Gln tRNA
|

1065511 | 1065585 | - | 75 | 114568554 | Mmar10_R0013 | - | 13 Val tRNA
|

1093532 | 1093607 | - | 76 | 114568554 | Mmar10_R0014 | - | 07 Asn tRNA
|

1096865 | 1096938 | - | 74 | 114568554 | Mmar10_R0015 | - | 19 Cys tRNA
|

1149523 | 1149609 | + | 87 | 114568554 | Mmar10_R0016 | - | 15 Leu tRNA
|

1183394 | 1184853 | + | 1460 | 114568554 | Mmar10_R0017 | - | 16S ribosomal RNA |

1185062 | 1185138 | + | 77 | 114568554 | Mmar10_R0018 | - | 14 Ile tRNA
|

1185183 | 1185258 | + | 76 | 114568554 | Mmar10_R0019 | - | 02 Ala tRNA
|

1185546 | 1188292 | + | 2747 | 114568554 | Mmar10_R0020 | - | 23S ribosomal RNA |

1188374 | 1188488 | + | 115 | 114568554 | Mmar10_R0021 | - | 5S ribosomal RNA |

1191990 | 1192066 | + | 77 | 114568554 | Mmar10_R0022 | - | 16 Met tRNA
|

1233509 | 1233583 | - | 75 | 114568554 | Mmar10_R0023 | - | 12 Thr tRNA
|

1239076 | 1239150 | + | 75 | 114568554 | Mmar10_R0024 | - | 17 Phe tRNA
|

1464925 | 1465009 | + | 85 | 114568554 | Mmar10_R0025 | - | 15 Leu tRNA
|

1474901 | 1474976 | + | 76 | 114568554 | Mmar10_R0026 | - | 13 Val tRNA
|

1479116 | 1479192 | + | 77 | 114568554 | Mmar10_R0027 | - | 06 Asp tRNA
|

1597298 | 1597385 | + | 88 | 114568554 | Mmar10_R0028 | - | 08 Ser tRNA
|

1641946 | 1642022 | - | 77 | 114568554 | Mmar10_R0029 | - | 11 Arg tRNA
|

1642438 | 1642514 | - | 77 | 114568554 | Mmar10_R0030 | - | 03 Pro tRNA
|

1657083 | 1657157 | - | 75 | 114568554 | Mmar10_R0031 | - | 04 Glu tRNA
|

1673952 | 1674029 | - | 78 | 114568554 | Mmar10_R0032 | - | 03 Pro tRNA
|

1823339 | 1823429 | + | 91 | 114568554 | Mmar10_R0033 | - | 08 Ser tRNA
|

1910144 | 1910230 | - | 87 | 114568554 | Mmar10_R0034 | - | 15 Leu tRNA
|

1962629 | 1962704 | - | 76 | 114568554 | Mmar10_R0035 | - | 20 Trp tRNA
|

1973447 | 1973520 | - | 74 | 114568554 | Mmar10_R0036 | - | 01 Gly tRNA
|

1975486 | 1975571 | - | 86 | 114568554 | Mmar10_R0037 | - | 18 Tyr tRNA
|

1987002 | 1987077 | + | 76 | 114568554 | Mmar10_R0038 | - | 12 Thr tRNA
|

1992960 | 1993074 | - | 115 | 114568554 | Mmar10_R0039 | - | 5S ribosomal RNA |

1993156 | 1995902 | - | 2747 | 114568554 | Mmar10_R0040 | - | 23S ribosomal RNA |

1996190 | 1996265 | - | 76 | 114568554 | Mmar10_R0041 | - | 02 Ala tRNA
|

1996310 | 1996386 | - | 77 | 114568554 | Mmar10_R0042 | - | 14 Ile tRNA
|

1996595 | 1998054 | - | 1460 | 114568554 | Mmar10_R0043 | - | 16S ribosomal RNA |

2016191 | 2016267 | - | 77 | 114568554 | Mmar10_R0044 | - | 09 His tRNA
|

2036309 | 2036384 | - | 76 | 114568554 | Mmar10_R0045 | - | 10 Lys tRNA
|

2170920 | 2170995 | + | 76 | 114568554 | Mmar10_R0046 | - | 10 Lys tRNA
|

2220825 | 2221138 | + | 314 | 114568554 | Mmar10_R0047 | - | tmRNA |

2271846 | 2272171 | - | 326 | 114568554 | Mmar10_R0048 | - | RNA component of RNaseP |

2313384 | 2313460 | - | 77 | 114568554 | Mmar10_R0049 | - | 16 Met tRNA
|

2511362 | 2511438 | + | 77 | 114568554 | Mmar10_R0050 | - | 11 Arg tRNA
|

2559640 | 2559725 | - | 86 | 114568554 | Mmar10_R0051 | - | 15 Leu tRNA
|

2731514 | 2731588 | + | 75 | 114568554 | Mmar10_R0052 | - | 13 Val tRNA
|

3072404 | 3072493 | - | 90 | 114568554 | Mmar10_R0053 | - | 08 Ser tRNA
|

3221418 | 3221492 | - | 75 | 114568554 | Mmar10_R0054 | - | 01 Gly tRNA
|