Материалы:NC 009767

LOCUS NC_009767 5723298 bp DNA circular BCT 04-SEP-2007 DEFINITION Roseiflexus castenholzii DSM 13941, complete genome. ACCESSION NC_009767 VERSION NC_009767.1 GI:156740028 KEYWORDS . SOURCE Roseiflexus castenholzii DSM 13941 ORGANISM Roseiflexus castenholzii DSM 13941 Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae; Roseiflexus. REFERENCE 1 (bases 1 to 5723298) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D.A., Hanada,S., Tsukatani,Y. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Roseiflexus castenholzii DSM 13941 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5723298) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (04-SEP-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5723298) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D.A., Hanada,S., Tsukatani,Y. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (20-AUG-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000804. URL -- http://www.jgi.doe.gov JGI Project ID: 4000375 Source DNA available from Donald A. Bryant (dab14@psu.edu) Bacteria available from DSMZ: DSM 13941 Contacts: Donald A. Bryant (dab14@psu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

41302 | 41378 | + | 77 | 156740028 | Rcas_R0001 | - | 03 Pro tRNA
|

75981 | 76055 | + | 75 | 156740028 | Rcas_R0002 | - | 01 Gly tRNA
|

133844 | 133920 | + | 77 | 156740028 | Rcas_R0003 | - | 04 Glu tRNA
|

196893 | 196967 | - | 75 | 156740028 | Rcas_R0004 | - | 12 Thr tRNA
|

258771 | 258844 | - | 74 | 156740028 | Rcas_R0005 | - | 01 Gly tRNA
|

540627 | 540702 | + | 76 | 156740028 | Rcas_R0006 | - | 11 Arg tRNA
|

872572 | 872647 | - | 76 | 156740028 | Rcas_R0007 | - | 16 Met tRNA
|

886184 | 886278 | - | 95 | 156740028 | Rcas_R0008 | - | SRP RNA; RNA component of signal recognition particle |

962602 | 962675 | + | 74 | 156740028 | Rcas_R0009 | - | 05 Gln tRNA
|

1572991 | 1573075 | - | 85 | 156740028 | Rcas_R0010 | - | 15 Leu tRNA
|

1586291 | 1586366 | - | 76 | 156740028 | Rcas_R0011 | - | 06 Asp tRNA
|

1586377 | 1586453 | - | 77 | 156740028 | Rcas_R0012 | - | 04 Glu tRNA
|

1609324 | 1609399 | - | 76 | 156740028 | Rcas_R0013 | - | 17 Phe tRNA
|

1609442 | 1609517 | - | 76 | 156740028 | Rcas_R0014 | - | 13 Val tRNA
|

1609519 | 1609607 | - | 89 | 156740028 | Rcas_R0015 | - | 15 Leu tRNA
|

1757168 | 1757243 | - | 76 | 156740028 | Rcas_R0016 | - | 12 Thr tRNA
|

1846648 | 1846722 | + | 75 | 156740028 | Rcas_R0017 | - | 07 Asn tRNA
|

1881873 | 1882239 | - | 367 | 156740028 | Rcas_R0018 | - | tmRNA |

1922170 | 1922245 | + | 76 | 156740028 | Rcas_R0019 | - | 11 Arg tRNA
|

2187193 | 2187269 | + | 77 | 156740028 | Rcas_R0020 | - | 14 Ile tRNA
|

2187313 | 2187388 | + | 76 | 156740028 | Rcas_R0021 | - | 02 Ala tRNA
|

2629831 | 2629916 | + | 86 | 156740028 | Rcas_R0022 | - | 15 Leu tRNA
|

2629938 | 2630014 | + | 77 | 156740028 | Rcas_R0023 | - | 03 Pro tRNA
|

2784838 | 2784914 | - | 77 | 156740028 | Rcas_R0024 | - | 13 Val tRNA
|

3224354 | 3224428 | + | 75 | 156740028 | Rcas_R0025 | - | 16 Met tRNA
|

3492830 | 3492920 | - | 91 | 156740028 | Rcas_R0026 | - | 08 Ser tRNA
|

3492941 | 3493032 | - | 92 | 156740028 | Rcas_R0027 | - | 08 Ser tRNA
|

3493071 | 3493146 | - | 76 | 156740028 | Rcas_R0028 | - | 20 Trp tRNA
|

3496423 | 3496513 | + | 91 | 156740028 | Rcas_R0029 | - | 08 Ser tRNA
|

3602007 | 3602081 | - | 75 | 156740028 | Rcas_R0030 | - | 10 Lys tRNA
|

3676935 | 3677021 | + | 87 | 156740028 | Rcas_R0031 | - | 15 Leu tRNA
|

3677058 | 3677131 | + | 74 | 156740028 | Rcas_R0032 | - | 05 Gln tRNA
|

3758719 | 3758795 | - | 77 | 156740028 | Rcas_R0033 | - | 11 Arg tRNA
|

3835323 | 3835408 | - | 86 | 156740028 | Rcas_R0034 | - | 15 Leu tRNA
|

3856207 | 3856283 | + | 77 | 156740028 | Rcas_R0035 | - | 03 Pro tRNA
|

3882829 | 3882903 | - | 75 | 156740028 | Rcas_R0036 | - | 16 Met tRNA
|

3882909 | 3883024 | - | 116 | 156740028 | Rcas_R0037 | - | 5S ribosomal RNA |

3883094 | 3886016 | - | 2923 | 156740028 | Rcas_R0038 | - | 23S ribosomal RNA |

3886210 | 3887678 | - | 1469 | 156740028 | Rcas_R0039 | - | 16S ribosomal RNA |

4059892 | 4059967 | + | 76 | 156740028 | Rcas_R0040 | - | 02 Ala tRNA
|

4059974 | 4060049 | + | 76 | 156740028 | Rcas_R0041 | - | 02 Ala tRNA
|

4361874 | 4361948 | - | 75 | 156740028 | Rcas_R0042 | - | 19 Cys tRNA
|

4620290 | 4620366 | + | 77 | 156740028 | Rcas_R0043 | - | 11 Arg tRNA
|

4620422 | 4620511 | + | 90 | 156740028 | Rcas_R0044 | - | 08 Ser tRNA
|

4718817 | 4718891 | + | 75 | 156740028 | Rcas_R0045 | - | 09 His tRNA
|

4986130 | 4986205 | - | 76 | 156740028 | Rcas_R0046 | - | 10 Lys tRNA
|

5017289 | 5017364 | + | 76 | 156740028 | Rcas_R0047 | - | 11 Arg tRNA
|

5059752 | 5059827 | - | 76 | 156740028 | Rcas_R0048 | - | 01 Gly tRNA
|

5069471 | 5069547 | - | 77 | 156740028 | Rcas_R0049 | - | 13 Val tRNA
|

5183512 | 5184980 | + | 1469 | 156740028 | Rcas_R0050 | - | 16S ribosomal RNA |

5185174 | 5188096 | + | 2923 | 156740028 | Rcas_R0051 | - | 23S ribosomal RNA |

5188166 | 5188281 | + | 116 | 156740028 | Rcas_R0052 | - | 5S ribosomal RNA |

5188287 | 5188361 | + | 75 | 156740028 | Rcas_R0053 | - | 16 Met tRNA
|

5232470 | 5232546 | + | 77 | 156740028 | Rcas_R0054 | - | 04 Glu tRNA
|

5573172 | 5573247 | - | 76 | 156740028 | Rcas_R0055 | - | 12 Thr tRNA
|

5573324 | 5573410 | - | 87 | 156740028 | Rcas_R0056 | - | 18 Tyr tRNA
|