Материалы:NC 007908

LOCUS NC_007908 4712337 bp DNA circular BCT 18-MAY-2006 DEFINITION Rhodoferax ferrireducens T118, complete genome. ACCESSION NC_007908 VERSION NC_007908.1 GI:89898822 KEYWORDS . SOURCE Rhodoferax ferrireducens T118 ORGANISM Rhodoferax ferrireducens T118 Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax. REFERENCE 1 (bases 1 to 4712337) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Chromosome of Rhodoferax ferrireducens DSM 15236 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4712337) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (16-MAR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4712337) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (27-FEB-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000267. URL -- http://www.jgi.doe.gov Source DNA available from Derek Lovley (dlovley@microbio.umass.edu) Bacteria available from DSMZ: DSM 15236 Contacts: Derek Lovley (dlovley@microbio.umass.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

207459 | 207534 | + | 76 | 89898822 | Rfer_R0001 | - | 11 Arg tRNA
|

378824 | 378899 | - | 76 | 89898822 | Rfer_R0002 | - | 02 Ala tRNA
|

659339 | 659412 | + | 74 | 89898822 | Rfer_R0003 | - | 01 Gly tRNA
|

1361114 | 1361190 | - | 77 | 89898822 | Rfer_R0004 | - | 03 Pro tRNA
|

1447387 | 1447463 | + | 77 | 89898822 | Rfer_R0005 | - | 03 Pro tRNA
|

1457493 | 1457585 | + | 93 | 89898822 | Rfer_R0006 | - | 08 Ser tRNA
|

1524587 | 1524674 | - | 88 | 89898822 | Rfer_R0007 | - | 08 Ser tRNA
|

1564522 | 1564597 | - | 76 | 89898822 | Rfer_R0008 | - | 07 Asn tRNA
|

1566744 | 1566845 | - | 102 | 89898822 | Rfer_R0009 | - | SRP RNA; RNA component of signal recognition particle |

1587794 | 1587870 | + | 77 | 89898822 | Rfer_R0010 | - | 11 Arg tRNA
|

1606605 | 1606689 | + | 85 | 89898822 | Rfer_R0011 | - | 15 Leu tRNA
|

1675287 | 1675373 | + | 87 | 89898822 | Rfer_R0012 | - | 15 Leu tRNA
|

1681424 | 1681499 | + | 76 | 89898822 | Rfer_R0013 | - | 01 Gly tRNA
|

1681552 | 1681625 | + | 74 | 89898822 | Rfer_R0014 | - | 19 Cys tRNA
|

1681638 | 1681730 | + | 93 | 89898822 | Rfer_R0015 | - | 15 Leu tRNA
|

1701944 | 1702020 | - | 77 | 89898822 | Rfer_R0016 | - | 16 Met tRNA
|

1728628 | 1728702 | + | 75 | 89898822 | Rfer_R0017 | - | 11 Arg tRNA
|

1791571 | 1791647 | + | 77 | 89898822 | Rfer_R0018 | - | 05 Gln tRNA
|

1837798 | 1837900 | + | 103 | 89898822 | Rfer_R0019 | - | |

2121364 | 2121448 | - | 85 | 89898822 | Rfer_R0020 | - | 15 Leu tRNA
|

2296385 | 2296474 | + | 90 | 89898822 | Rfer_R0021 | - | 08 Ser tRNA
|

2381770 | 2381844 | + | 75 | 89898822 | Rfer_R0022 | - | 13 Val tRNA
|

2462673 | 2462748 | + | 76 | 89898822 | Rfer_R0023 | - | 13 Val tRNA
|

2464779 | 2464854 | + | 76 | 89898822 | Rfer_R0024 | - | 09 His tRNA
|

2583007 | 2583083 | + | 77 | 89898822 | Rfer_R0025 | - | 03 Pro tRNA
|

2619696 | 2619780 | + | 85 | 89898822 | Rfer_R0026 | - | 15 Leu tRNA
|

2702935 | 2703011 | - | 77 | 89898822 | Rfer_R0027 | - | 13 Val tRNA
|

2710968 | 2711076 | + | 109 | 89898822 | Rfer_R0028 | - | |

2718676 | 2718770 | - | 95 | 89898822 | Rfer_R0029 | - | |

2951325 | 2951401 | - | 77 | 89898822 | Rfer_R0030 | - | 06 Asp tRNA
|

2951495 | 2951570 | - | 76 | 89898822 | Rfer_R0031 | - | 04 Glu tRNA
|

2951629 | 2951704 | - | 76 | 89898822 | Rfer_R0032 | - | 02 Ala tRNA
|

2977648 | 2977723 | + | 76 | 89898822 | Rfer_R0033 | - | 12 Thr tRNA
|

3114440 | 3114516 | - | 77 | 89898822 | Rfer_R0034 | - | 11 Arg tRNA
|

3122337 | 3122412 | + | 76 | 89898822 | Rfer_R0035 | - | 10 Lys tRNA
|

3129592 | 3129947 | + | 356 | 89898822 | Rfer_R0036 | - | tmRNA |

3275036 | 3275111 | + | 76 | 89898822 | Rfer_R0037 | - | 12 Thr tRNA
|

3329631 | 3329729 | + | 99 | 89898822 | Rfer_R0038 | - | |

3329757 | 3329892 | + | 136 | 89898822 | Rfer_R0039 | - | |

3355003 | 3355078 | + | 76 | 89898822 | Rfer_R0040 | - | 10 Lys tRNA
|

3591461 | 3591548 | + | 88 | 89898822 | Rfer_R0041 | - | 08 Ser tRNA
|

3599151 | 3599248 | - | 98 | 89898822 | Rfer_R0042 | - | |

3850851 | 3851131 | - | 281 | 89898822 | Rfer_R0043 | - | RNA component of RNaseP |

3992057 | 3992132 | - | 76 | 89898822 | Rfer_R0044 | - | 17 Phe tRNA
|

4009554 | 4009629 | - | 76 | 89898822 | Rfer_R0045 | - | 20 Trp tRNA
|

4010877 | 4010951 | - | 75 | 89898822 | Rfer_R0046 | - | 12 Thr tRNA
|

4011013 | 4011086 | - | 74 | 89898822 | Rfer_R0047 | - | 01 Gly tRNA
|

4011175 | 4011260 | - | 86 | 89898822 | Rfer_R0048 | - | 18 Tyr tRNA
|

4108877 | 4108989 | - | 113 | 89898822 | Rfer_R0049 | - | 5S ribosomal RNA |

4109136 | 4112015 | - | 2880 | 89898822 | Rfer_R0050 | - | 23S ribosomal RNA |

4112364 | 4112439 | - | 76 | 89898822 | Rfer_R0051 | - | 02 Ala tRNA
|

4112466 | 4112542 | - | 77 | 89898822 | Rfer_R0052 | - | 14 Ile tRNA
|

4112640 | 4114170 | - | 1531 | 89898822 | Rfer_R0053 | - | 16S ribosomal RNA |

4114521 | 4114633 | - | 113 | 89898822 | Rfer_R0054 | - | 5S ribosomal RNA |

4114780 | 4117659 | - | 2880 | 89898822 | Rfer_R0055 | - | 23S ribosomal RNA |

4118008 | 4118083 | - | 76 | 89898822 | Rfer_R0056 | - | 02 Ala tRNA
|

4118110 | 4118186 | - | 77 | 89898822 | Rfer_R0057 | - | 14 Ile tRNA
|

4118284 | 4119814 | - | 1531 | 89898822 | Rfer_R0058 | - | 16S ribosomal RNA |

4691645 | 4691721 | - | 77 | 89898822 | Rfer_R0059 | - | 16 Met tRNA
|