Материалы:NC 004088

```
LOCUS NC_004088 4600755 bp DNA circular BCT 26-JAN-2006
DEFINITION Yersinia pestis KIM, complete genome.
ACCESSION NC_004088
VERSION NC_004088.1 GI:22123922
KEYWORDS .
SOURCE Yersinia pestis KIM
ORGANISM Yersinia pestis KIM
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Yersinia.
REFERENCE 1 (bases 1 to 4600755)
AUTHORS Deng,W., Burland,V., Plunkett,G. III, Boutin,A., Mayhew,G.F.,
Liss,P., Perna,N.T., Rose,D.J., Mau,B., Zhou,S., Schwartz,D.C.,
Fetherston,J.D., Lindler,L.E., Brubaker,R.R., Plana,G.V.,
Straley,S.C., McDonough,K.A., Nilles,M.L., Matson,J.S.,
Blattner,F.R. and Perry,R.D.
TITLE Genome Sequence of Yersinia pestis KIM
JOURNAL J. Bacteriol. 184 (16), 4601-4611 (2002)
PUBMED 12142430
REFERENCE 2 (bases 1 to 4600755)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4600755)
AUTHORS Deng,W., Burland,V., Plunkett,G. III, Boutin,A., Mayhew,G.F.,
Liss,P., Perna,N.T., Rose,D.J., Mau,B., Zhou,S., Schwartz,D.C.,
Fetherston,J.D., Lindler,L.E., Brubaker,R.R., Plana,G.V.,
Straley,S.C., McDonough,K.A., Nilles,M.L., Matson,J.S.,
Blattner,F.R. and Perry,R.D.
TITLE Direct Submission
JOURNAL Submitted (21-FEB-2002) Genetics, University of Wisconsin, 445
Henry Mall, Madison, WI 53706, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE009952.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

12016 | 13600 | + | 1585 | 22123922 | yr001 | - | 16S ribosomal RNA |

13694 | 13766 | + | 73 | 22123922 | yt001 | - | 04 Glu tRNA
|

14022 | 16928 | + | 2907 | 22123922 | yr002 | - | 23S ribosomal RNA |

17036 | 17155 | + | 120 | 22123922 | yr003 | - | 5S ribosomal RNA |

17169 | 17241 | + | 73 | 22123922 | yt002 | - | 12 Thr tRNA
|

17285 | 17399 | + | 115 | 22123922 | yr004 | - | 5S ribosomal RNA |

125522 | 125898 | - | 377 | 22123922 | ys001 | - | RNase P, RNA component |

355930 | 357514 | + | 1585 | 22123922 | yr005 | - | 16S ribosomal RNA |

357608 | 357680 | + | 73 | 22123922 | yt003 | - | 04 Glu tRNA
|

357936 | 360842 | + | 2907 | 22123922 | yr006 | - | 23S ribosomal RNA |

360950 | 361069 | + | 120 | 22123922 | yr007 | - | 5S ribosomal RNA |

361193 | 361272 | + | 80 | 22123922 | yt004 | - | 06 Asp tRNA
|

361278 | 361350 | + | 73 | 22123922 | yt005 | - | 20 Trp tRNA
|

419952 | 420025 | + | 74 | 22123922 | yt006 | - | 11 Arg tRNA
|

420112 | 420184 | + | 73 | 22123922 | yt007 | - | 09 His tRNA
|

420204 | 420287 | + | 84 | 22123922 | yt008 | - | 15 Leu tRNA
|

420366 | 420439 | + | 74 | 22123922 | yt009 | - | 03 Pro tRNA
|

522393 | 523977 | + | 1585 | 22123922 | yr008 | - | 16S ribosomal RNA |

524037 | 524110 | + | 74 | 22123922 | yt010 | - | 14 Ile tRNA
|

524165 | 524237 | + | 73 | 22123922 | yt011 | - | 02 Ala tRNA
|

524459 | 527365 | + | 2907 | 22123922 | yr009 | - | 23S ribosomal RNA |

527473 | 527592 | + | 120 | 22123922 | yr010 | - | 5S ribosomal RNA |

534149 | 534221 | + | 73 | 22123922 | yt012 | - | 12 Thr tRNA
|

534243 | 534324 | + | 82 | 22123922 | yt013 | - | 18 Tyr tRNA
|

534477 | 534548 | + | 72 | 22123922 | yt014 | - | 01 Gly tRNA
|

534558 | 534630 | + | 73 | 22123922 | yt015 | - | 12 Thr tRNA
|

565257 | 566841 | + | 1585 | 22123922 | yr011 | - | 16S ribosomal RNA |

566935 | 567007 | + | 73 | 22123922 | yt016 | - | 04 Glu tRNA
|

567263 | 570169 | + | 2907 | 22123922 | yr012 | - | 23S ribosomal RNA |

570277 | 570396 | + | 120 | 22123922 | yr013 | - | 5S ribosomal RNA |

674907 | 674979 | - | 73 | 22123922 | yt017 | - | 17 Phe tRNA
|

704627 | 704699 | + | 73 | 22123922 | yt018 | - | 01 Gly tRNA
|

704794 | 704866 | + | 73 | 22123922 | yt019 | - | 01 Gly tRNA
|

769517 | 769600 | + | 84 | 22123922 | yt020 | - | 15 Leu tRNA
|

769664 | 769737 | + | 74 | 22123922 | yt021 | - | 16 Met tRNA
|

834911 | 834992 | + | 82 | 22123922 | yt022 | - | 15 Leu tRNA
|

995663 | 995752 | + | 90 | 22123922 | yt023 | - | 08 Ser tRNA
|

995764 | 995837 | + | 74 | 22123922 | yt024 | - | 11 Arg tRNA
|

995898 | 995971 | + | 74 | 22123922 | yt025 | - | 11 Arg tRNA
|

996054 | 996127 | + | 74 | 22123922 | yt026 | - | 11 Arg tRNA
|

1024389 | 1025973 | + | 1585 | 22123922 | yr014 | - | 16S ribosomal RNA |

1026033 | 1026106 | + | 74 | 22123922 | yt027 | - | 14 Ile tRNA
|

1026161 | 1026233 | + | 73 | 22123922 | yt028 | - | 02 Ala tRNA
|

1026455 | 1029361 | + | 2907 | 22123922 | yr015 | - | 23S ribosomal RNA |

1029469 | 1029588 | + | 120 | 22123922 | yr016 | - | 5S ribosomal RNA |

1179164 | 1179277 | + | 114 | 22123922 | yr017 | - | 4.5S RNA |

1249406 | 1249479 | + | 74 | 22123922 | yt029 | - | 11 Arg tRNA
|

1342164 | 1342235 | - | 72 | 22123922 | yt030 | - | 05 Gln tRNA
|

1342244 | 1342317 | - | 74 | 22123922 | yt031 | - | 16 Met tRNA
|

1342353 | 1342424 | - | 72 | 22123922 | yt032 | - | 05 Gln tRNA
|

1342511 | 1342582 | - | 72 | 22123922 | yt033 | - | 05 Gln tRNA
|

1342615 | 1342696 | - | 82 | 22123922 | yt034 | - | 15 Leu tRNA
|

1342707 | 1342780 | - | 74 | 22123922 | yt035 | - | 16 Met tRNA
|

1658581 | 1658659 | - | 79 | 22123922 | yt036 | - | 02 Ala tRNA
|

1658740 | 1658812 | - | 73 | 22123922 | yt037 | - | 02 Ala tRNA
|

1661444 | 1661516 | + | 73 | 22123922 | yt038 | - | 13 Val tRNA
|

1661556 | 1661628 | + | 73 | 22123922 | yt039 | - | 13 Val tRNA
|

1661676 | 1661748 | + | 73 | 22123922 | yt040 | - | 13 Val tRNA
|

1661951 | 1662023 | + | 73 | 22123922 | yt041 | - | 10 Lys tRNA
|

1733801 | 1733872 | + | 72 | 22123922 | yt042 | - | 11 Arg tRNA
|

2145274 | 2145347 | - | 74 | 22123922 | yt043 | - | 13 Val tRNA
|

2145410 | 2145483 | - | 74 | 22123922 | yt044 | - | 13 Val tRNA
|

2379356 | 2379437 | + | 82 | 22123922 | yt045 | - | 18 Tyr tRNA
|

2512097 | 2512183 | + | 87 | 22123922 | yt046 | - | 08 Ser tRNA
|

2520506 | 2520592 | + | 87 | 22123922 | yt047 | - | 08 Ser tRNA
|

2645436 | 2645508 | + | 73 | 22123922 | yt048 | - | 07 Asn tRNA
|

2701503 | 2701585 | - | 83 | 22123922 | yt049 | - | 15 Leu tRNA
|

2701599 | 2701669 | - | 71 | 22123922 | yt050 | - | 19 Cys tRNA
|

2701725 | 2701797 | - | 73 | 22123922 | yt051 | - | 01 Gly tRNA
|

2708249 | 2708321 | - | 73 | 22123922 | yt052 | - | 10 Lys tRNA
|

2837679 | 2837751 | + | 73 | 22123922 | yt053 | - | 07 Asn tRNA
|

2851956 | 2852028 | + | 73 | 22123922 | yt054 | - | 07 Asn tRNA
|

3007878 | 3007962 | - | 85 | 22123922 | yt055 | - | 08 Ser tRNA
|

3231057 | 3231130 | + | 74 | 22123922 | yt056 | - | 03 Pro tRNA
|

3263205 | 3263277 | - | 73 | 22123922 | yt057 | - | 12 Thr tRNA
|

3263286 | 3263370 | - | 85 | 22123922 | yt058 | - | 08 Ser tRNA
|

3361500 | 3361569 | - | 70 | 22123922 | yt059 | - | Xaa tRNA |

3361603 | 3361675 | - | 73 | 22123922 | yt060 | - | 10 Lys tRNA
|

3361706 | 3361778 | - | 73 | 22123922 | yt061 | - | 10 Lys tRNA
|

3388875 | 3389238 | + | 364 | 22123922 | ys002 | - | 10Sa RNA (tmRNA) |

3404626 | 3404699 | - | 74 | 22123922 | yt062 | - | 06 Asp tRNA
|

3411993 | 3412066 | - | 74 | 22123922 | yt063 | - | 06 Asp tRNA
|

3412190 | 3412309 | - | 120 | 22123922 | yr018 | - | 5S ribosomal RNA |

3412417 | 3415323 | - | 2907 | 22123922 | yr019 | - | 23S ribosomal RNA |

3415579 | 3415651 | - | 73 | 22123922 | yt064 | - | 04 Glu tRNA
|

3415745 | 3417329 | - | 1585 | 22123922 | yr020 | - | 16S ribosomal RNA |

3471666 | 3471739 | + | 74 | 22123922 | yt065 | - | 16 Met tRNA
|

3471866 | 3471939 | + | 74 | 22123922 | yt066 | - | 16 Met tRNA
|

3601512 | 3601582 | - | 71 | 22123922 | yt067 | - | 01 Gly tRNA
|

3632001 | 3632183 | + | 183 | 22123922 | yr021 | - | 6S RNA |

3692004 | 3692076 | + | 73 | 22123922 | yt068 | - | 17 Phe tRNA
|

3923482 | 3923555 | + | 74 | 22123922 | yt069 | - | 16 Met tRNA
|

4173142 | 4173225 | + | 84 | 22123922 | yt070 | - | 15 Leu tRNA
|

4232828 | 4232934 | - | 107 | 22123922 | ys003 | - | spot 42 RNA, inhibition of DNA synthesis |

4241418 | 4241537 | - | 120 | 22123922 | yr022 | - | 5S ribosomal RNA |

4241645 | 4244551 | - | 2907 | 22123922 | yr023 | - | 23S ribosomal RNA |

4244807 | 4244879 | - | 73 | 22123922 | yt071 | - | 04 Glu tRNA
|

4244973 | 4246557 | - | 1585 | 22123922 | yr024 | - | 16S ribosomal RNA |

4251363 | 4251436 | + | 74 | 22123922 | yt072 | - | 03 Pro tRNA
|

4494759 | 4494849 | - | 91 | 22123922 | yt073 | - | Sec tRNA |