Материалы:NC 009636

LOCUS NC_009636 3781904 bp DNA circular BCT 03-JUL-2007 DEFINITION Sinorhizobium medicae WSM419, complete genome. ACCESSION NC_009636 VERSION NC_009636.1 GI:150395228 KEYWORDS . SOURCE Sinorhizobium medicae WSM419 ORGANISM Sinorhizobium medicae WSM419 Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium. REFERENCE 1 (bases 1 to 3781904) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Reeve,W. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Sinorhizobium medicae WSM419 chromosome JOURNAL Unpublished REFERENCE 2 (bases 1 to 3781904) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (03-JUL-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3781904) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Reeve,W. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (21-JUN-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000738. URL -- http://www.jgi.doe.gov JGI Project ID: 4001622 Source DNA and bacteria available from Wayne Reeve (reeve@murdoch.edu.au) Contacts: Wayne Reeve (reeve@murdoch.edu.au) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

95406 | 95482 | + | 77 | 150395228 | Smed_R0001 | - | 11 Arg tRNA
|

127547 | 127622 | - | 76 | 150395228 | Smed_R0002 | - | 12 Thr tRNA
|

149463 | 149537 | + | 75 | 150395228 | Smed_R0003 | - | 01 Gly tRNA
|

232539 | 232613 | - | 75 | 150395228 | Smed_R0004 | - | 12 Thr tRNA
|

238918 | 238993 | + | 76 | 150395228 | Smed_R0005 | - | 17 Phe tRNA
|

348637 | 348713 | + | 77 | 150395228 | Smed_R0006 | - | 09 His tRNA
|

397699 | 397772 | - | 74 | 150395228 | Smed_R0007 | - | 05 Gln tRNA
|

599679 | 599753 | + | 75 | 150395228 | Smed_R0008 | - | 05 Gln tRNA
|

603503 | 603579 | + | 77 | 150395228 | Smed_R0009 | - | 03 Pro tRNA
|

717253 | 717342 | - | 90 | 150395228 | Smed_R0010 | - | 08 Ser tRNA
|

894337 | 894413 | + | 77 | 150395228 | Smed_R0011 | - | 03 Pro tRNA
|

959330 | 959405 | - | 76 | 150395228 | Smed_R0012 | - | 13 Val tRNA
|

959865 | 959941 | + | 77 | 150395228 | Smed_R0013 | - | 06 Asp tRNA
|

960011 | 960087 | + | 77 | 150395228 | Smed_R0014 | - | 06 Asp tRNA
|

1041875 | 1041950 | + | 76 | 150395228 | Smed_R0015 | - | 12 Thr tRNA
|

1046202 | 1046286 | + | 85 | 150395228 | Smed_R0016 | - | 18 Tyr tRNA
|

1046310 | 1046383 | + | 74 | 150395228 | Smed_R0017 | - | 01 Gly tRNA
|

1049921 | 1049996 | + | 76 | 150395228 | Smed_R0018 | - | 20 Trp tRNA
|

1095586 | 1095670 | + | 85 | 150395228 | Smed_R0019 | - | 15 Leu tRNA
|

1258759 | 1258843 | + | 85 | 150395228 | Smed_R0020 | - | 15 Leu tRNA
|

1392146 | 1392235 | + | 90 | 150395228 | Smed_R0021 | - | 08 Ser tRNA
|

1435040 | 1435115 | + | 76 | 150395228 | Smed_R0022 | - | 02 Ala tRNA
|

1436539 | 1436612 | + | 74 | 150395228 | Smed_R0023 | - | 19 Cys tRNA
|

1438958 | 1439032 | + | 75 | 150395228 | Smed_R0024 | - | 07 Asn tRNA
|

1456127 | 1456212 | - | 86 | 150395228 | Smed_R0025 | - | 15 Leu tRNA
|

1506585 | 1506660 | + | 76 | 150395228 | Smed_R0026 | - | 10 Lys tRNA
|

1527624 | 1527700 | - | 77 | 150395228 | Smed_R0027 | - | 11 Arg tRNA
|

1528090 | 1528166 | - | 77 | 150395228 | Smed_R0028 | - | 03 Pro tRNA
|

1531855 | 1531930 | + | 76 | 150395228 | Smed_R0029 | - | 04 Glu tRNA
|

1532147 | 1532222 | + | 76 | 150395228 | Smed_R0030 | - | 04 Glu tRNA
|

1532279 | 1532353 | + | 75 | 150395228 | Smed_R0031 | - | 04 Glu tRNA
|

1532539 | 1532614 | + | 76 | 150395228 | Smed_R0032 | - | 04 Glu tRNA
|

1984916 | 1984991 | - | 76 | 150395228 | Smed_R0033 | - | 10 Lys tRNA
|

2151161 | 2151493 | - | 333 | 150395228 | Smed_R0034 | - | RNA component of RNaseP |

2295232 | 2295307 | - | 76 | 150395228 | Smed_R0035 | - | 16 Met tRNA
|

2583865 | 2583941 | - | 77 | 150395228 | Smed_R0036 | - | 16 Met tRNA
|

2584024 | 2584137 | - | 114 | 150395228 | Smed_R0037 | - | 5S ribosomal RNA |

2584372 | 2587011 | - | 2640 | 150395228 | Smed_R0038 | - | 23S ribosomal RNA |

2587827 | 2587902 | - | 76 | 150395228 | Smed_R0039 | - | 02 Ala tRNA
|

2588067 | 2588143 | - | 77 | 150395228 | Smed_R0040 | - | 14 Ile tRNA
|

2588398 | 2589875 | - | 1478 | 150395228 | Smed_R0041 | - | 16S ribosomal RNA |

2622997 | 2623081 | - | 85 | 150395228 | Smed_R0042 | - | 15 Leu tRNA
|

2697466 | 2697542 | - | 77 | 150395228 | Smed_R0043 | - | 16 Met tRNA
|

2834043 | 2834117 | + | 75 | 150395228 | Smed_R0044 | - | 13 Val tRNA
|

2989057 | 2989133 | - | 77 | 150395228 | Smed_R0045 | - | 16 Met tRNA
|

2989216 | 2989329 | - | 114 | 150395228 | Smed_R0046 | - | 5S ribosomal RNA |

2989564 | 2992203 | - | 2640 | 150395228 | Smed_R0047 | - | 23S ribosomal RNA |

2993019 | 2993094 | - | 76 | 150395228 | Smed_R0048 | - | 02 Ala tRNA
|

2993259 | 2993335 | - | 77 | 150395228 | Smed_R0049 | - | 14 Ile tRNA
|

2993590 | 2995067 | - | 1478 | 150395228 | Smed_R0050 | - | 16S ribosomal RNA |

3009945 | 3010021 | + | 77 | 150395228 | Smed_R0051 | - | 11 Arg tRNA
|

3154830 | 3154919 | - | 90 | 150395228 | Smed_R0052 | - | 08 Ser tRNA
|

3193426 | 3193500 | - | 75 | 150395228 | Smed_R0053 | - | 01 Gly tRNA
|

3463168 | 3464645 | + | 1478 | 150395228 | Smed_R0054 | - | 16S ribosomal RNA |

3464900 | 3464976 | + | 77 | 150395228 | Smed_R0055 | - | 14 Ile tRNA
|

3465141 | 3465216 | + | 76 | 150395228 | Smed_R0056 | - | 02 Ala tRNA
|

3466032 | 3468671 | + | 2640 | 150395228 | Smed_R0057 | - | 23S ribosomal RNA |

3468906 | 3469019 | + | 114 | 150395228 | Smed_R0058 | - | 5S ribosomal RNA |

3469102 | 3469178 | + | 77 | 150395228 | Smed_R0059 | - | 16 Met tRNA
|

3625735 | 3625824 | + | 90 | 150395228 | Smed_R0060 | - | 08 Ser tRNA
|

3636444 | 3636547 | + | 104 | 150395228 | Smed_R0061 | - | SRP RNA; RNA component of signal recognition particle |

3662657 | 3662732 | - | 76 | 150395228 | Smed_R0062 | - | 02 Ala tRNA
|

3670604 | 3670690 | + | 87 | 150395228 | Smed_R0063 | - | 15 Leu tRNA
|