Материалы:NC 008528

LOCUS NC_008528 1780517 bp DNA circular BCT 31-OCT-2006 DEFINITION Oenococcus oeni PSU-1, complete genome. ACCESSION NC_008528 VERSION NC_008528.1 GI:116490126 KEYWORDS . SOURCE Oenococcus oeni PSU-1 ORGANISM Oenococcus oeni PSU-1 Bacteria; Firmicutes; Lactobacillales; Oenococcus. REFERENCE 1 (bases 1 to 1780517) AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B., Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K., Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J., Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B., Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E., Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D., Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D., Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P., Kozyavkin,S., Weimer,B. and Mills,D. TITLE Comparative genomics of the lactic acid bacteria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006) PUBMED 17030793 REFERENCE 2 (bases 1 to 1780517) AUTHORS . CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1780517) AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S., Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S., Makarova,K., Koonin,E., Mills,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc. TITLE Direct Submission JOURNAL Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000411. URL -- http://www.jgi.doe.gov JGI Project ID: 2662182 Source DNA and bacteria available from David Mills (damills@ucdavis.edu) Contacts: David Mills (damills@ucdavis.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by Kira Makarova and Eugene Koonin Finishing done by Fidelity Systems Inc. (Gaithersburg) URL -- http://www.fidelitysystems.com Project Information available at: http://genome.jgi-psf.org/mic_home.html The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

97797 | 97869 | - | 73 | 116490126 | OEOE_t0104 | - | 10 Lys tRNA
|

184055 | 184127 | + | 73 | 116490126 | OEOE_t0193 | - | 07 Asn tRNA
|

184194 | 184266 | + | 73 | 116490126 | OEOE_t0194 | - | 12 Thr tRNA
|

389125 | 389197 | - | 73 | 116490126 | OEOE_t0403 | - | 11 Arg tRNA
|

393198 | 393270 | + | 73 | 116490126 | OEOE_t0409 | - | 11 Arg tRNA
|

429554 | 429627 | - | 74 | 116490126 | OEOE_t0442 | - | 12 Thr tRNA
|

431415 | 431499 | - | 85 | 116490126 | OEOE_t0445 | - | 15 Leu tRNA
|

489667 | 490016 | - | 350 | 116490126 | OEOE_s0505 | - | tmRNA |

490141 | 490212 | + | 72 | 116490126 | OEOE_t0506 | - | 04 Glu tRNA
|

512229 | 512316 | + | 88 | 116490126 | OEOE_t0530 | - | 08 Ser tRNA
|

616309 | 617875 | + | 1567 | 116490126 | OEOE_r0653 | - | 16S ribosomal RNA |

617973 | 618045 | + | 73 | 116490126 | OEOE_t0654 | - | 02 Ala tRNA
|

618261 | 621148 | + | 2888 | 116490126 | OEOE_r0655 | - | 23S ribosomal RNA |

621245 | 621280 | + | 36 | 116490126 | OEOE_r0656 | - | 5S ribosomal RNA |

646054 | 646130 | + | 77 | 116490126 | OEOE_t0685 | - | 10 Lys tRNA
|

657699 | 657773 | + | 75 | 116490126 | OEOE_t0698 | - | 04 Glu tRNA
|

729898 | 729969 | - | 72 | 116490126 | OEOE_t0781 | - | 01 Gly tRNA
|

763895 | 763965 | + | 71 | 116490126 | OEOE_t0816 | - | 19 Cys tRNA
|

798601 | 798684 | + | 84 | 116490126 | OEOE_t0851 | - | 15 Leu tRNA
|

864352 | 864425 | + | 74 | 116490126 | OEOE_t0921 | - | 20 Trp tRNA
|

864428 | 864501 | + | 74 | 116490126 | OEOE_t0922 | - | 09 His tRNA
|

864540 | 864623 | + | 84 | 116490126 | OEOE_t0923 | - | 15 Leu tRNA
|

894078 | 894151 | + | 74 | 116490126 | OEOE_t0955 | - | 11 Arg tRNA
|

901908 | 901999 | - | 92 | 116490126 | OEOE_t0967 | - | 08 Ser tRNA
|

1021190 | 1021513 | - | 324 | 116490126 | OEOE_r1091 | - | RNA_RNaseP_classB |

1146569 | 1146661 | - | 93 | 116490126 | OEOE_t1213 | - | 08 Ser tRNA
|

1146741 | 1146814 | - | 74 | 116490126 | OEOE_t1214 | - | 14 Ile tRNA
|

1146817 | 1146887 | - | 71 | 116490126 | OEOE_t1215 | - | 01 Gly tRNA
|

1146908 | 1146980 | - | 73 | 116490126 | OEOE_t1216 | - | 17 Phe tRNA
|

1147012 | 1147086 | - | 75 | 116490126 | OEOE_t1217 | - | 06 Asp tRNA
|

1147143 | 1147216 | - | 74 | 116490126 | OEOE_t1218 | - | 16 Met tRNA
|

1147243 | 1147332 | - | 90 | 116490126 | OEOE_t1219 | - | 08 Ser tRNA
|

1147352 | 1147425 | - | 74 | 116490126 | OEOE_t1220 | - | 16 Met tRNA
|

1147439 | 1147512 | - | 74 | 116490126 | OEOE_t1221 | - | 16 Met tRNA
|

1147534 | 1147607 | - | 74 | 116490126 | OEOE_t1222 | - | 03 Pro tRNA
|

1147672 | 1147745 | - | 74 | 116490126 | OEOE_t1223 | - | 11 Arg tRNA
|

1147812 | 1147895 | - | 84 | 116490126 | OEOE_t1224 | - | 15 Leu tRNA
|

1147917 | 1147988 | - | 72 | 116490126 | OEOE_t1225 | - | 01 Gly tRNA
|

1148009 | 1148081 | - | 73 | 116490126 | OEOE_t1226 | - | 12 Thr tRNA
|

1148120 | 1148192 | - | 73 | 116490126 | OEOE_t1227 | - | 13 Val tRNA
|

1263744 | 1263827 | - | 84 | 116490126 | OEOE_t1359 | - | 15 Leu tRNA
|

1273728 | 1273763 | - | 36 | 116490126 | OEOE_r1370 | - | 5S ribosomal RNA |

1273860 | 1276747 | - | 2888 | 116490126 | OEOE_r1371 | - | 23S ribosomal RNA |

1276963 | 1277035 | - | 73 | 116490126 | OEOE_t1372 | - | 02 Ala tRNA
|

1277133 | 1278699 | - | 1567 | 116490126 | OEOE_r1373 | - | 16S ribosomal RNA |

1540760 | 1540832 | - | 73 | 116490126 | OEOE_t1622 | - | 05 Gln tRNA
|

1556286 | 1556359 | - | 74 | 116490126 | OEOE_t1637 | - | 03 Pro tRNA
|

1736852 | 1736924 | + | 73 | 116490126 | OEOE_t1816 | - | 02 Ala tRNA
|

1764949 | 1765020 | - | 72 | 116490126 | OEOE_t1842 | - | 07 Asn tRNA
|

1767500 | 1767582 | + | 83 | 116490126 | OEOE_t1846 | - | 18 Tyr tRNA
|

1767630 | 1767702 | + | 73 | 116490126 | OEOE_t1847 | - | 05 Gln tRNA
|