Материалы:NC 009484

LOCUS NC_009484 3389227 bp DNA circular BCT 14-AUG-2007 DEFINITION Acidiphilium cryptum JF-5, complete genome. ACCESSION NC_009484 VERSION NC_009484.1 GI:148259021 KEYWORDS . SOURCE Acidiphilium cryptum JF-5 ORGANISM Acidiphilium cryptum JF-5 Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium. REFERENCE 1 (bases 1 to 3389227) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Acidiphilium cryptum JF-5 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3389227) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3389227) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Magnuson,T. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (04-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000697. URL -- http://www.jgi.doe.gov JGI Project ID: 4000181 Source DNA and bacteria available from Timothy Magnuson (magntimo@isu.edu) Contacts: Timothy Magnuson (magntimo@isu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

42985 | 43060 | + | 76 | 148259021 | Acry_R0001 | - | 10 Lys tRNA
|

43236 | 43310 | - | 75 | 148259021 | Acry_R0002 | - | 12 Thr tRNA
|

89466 | 89551 | + | 86 | 148259021 | Acry_R0003 | - | 18 Tyr tRNA
|

269117 | 269206 | - | 90 | 148259021 | Acry_R0004 | - | 08 Ser tRNA
|

308460 | 308536 | - | 77 | 148259021 | Acry_R0005 | - | 03 Pro tRNA
|

316373 | 316462 | + | 90 | 148259021 | Acry_R0006 | - | 08 Ser tRNA
|

409792 | 409866 | + | 75 | 148259021 | Acry_R0007 | - | 01 Gly tRNA
|

708415 | 708489 | + | 75 | 148259021 | Acry_R0008 | - | 13 Val tRNA
|

779659 | 779735 | - | 77 | 148259021 | Acry_R0009 | - | 11 Arg tRNA
|

780126 | 780199 | - | 74 | 148259021 | Acry_R0010 | - | 03 Pro tRNA
|

824823 | 824897 | + | 75 | 148259021 | Acry_R0011 | - | 12 Thr tRNA
|

829736 | 829810 | + | 75 | 148259021 | Acry_R0012 | - | 05 Gln tRNA
|

1017347 | 1017428 | + | 82 | 148259021 | Acry_R0013 | - | 15 Leu tRNA
|

1024118 | 1024189 | + | 72 | 148259021 | Acry_R0014 | - | 13 Val tRNA
|

1024515 | 1024591 | + | 77 | 148259021 | Acry_R0015 | - | 06 Asp tRNA
|

1137874 | 1137950 | - | 77 | 148259021 | Acry_R0016 | - | 20 Trp tRNA
|

1144880 | 1144953 | - | 74 | 148259021 | Acry_R0017 | - | 01 Gly tRNA
|

1312606 | 1312681 | - | 76 | 148259021 | Acry_R0019 | - | 10 Lys tRNA
|

1431753 | 1431842 | + | 90 | 148259021 | Acry_R0020 | - | 08 Ser tRNA
|

1448307 | 1448382 | - | 76 | 148259021 | Acry_R0021 | - | 04 Glu tRNA
|

1668357 | 1668433 | + | 77 | 148259021 | Acry_R0022 | - | 11 Arg tRNA
|

1668714 | 1668788 | - | 75 | 148259021 | Acry_R0023 | - | 12 Thr tRNA
|

1711813 | 1711887 | + | 75 | 148259021 | Acry_R0024 | - | 16 Met tRNA
|

1734359 | 1734434 | - | 76 | 148259021 | Acry_R0025 | - | 02 Ala tRNA
|

1843982 | 1844067 | + | 86 | 148259021 | Acry_R0026 | - | 15 Leu tRNA
|

1863143 | 1863225 | + | 83 | 148259021 | Acry_R0027 | - | 15 Leu tRNA
|

1867251 | 1867327 | + | 77 | 148259021 | Acry_R0028 | - | 03 Pro tRNA
|

1900697 | 1900772 | + | 76 | 148259021 | Acry_R0029 | - | 09 His tRNA
|

1960152 | 1960225 | - | 74 | 148259021 | Acry_R0030 | - | 19 Cys tRNA
|

2007442 | 2007518 | - | 77 | 148259021 | Acry_R0031 | - | 16 Met tRNA
|

2007537 | 2007664 | - | 128 | 148259021 | Acry_R0032 | - | 5S ribosomal RNA |

2007753 | 2010488 | - | 2736 | 148259021 | Acry_R0033 | - | 23S ribosomal RNA |

2010925 | 2010997 | - | 73 | 148259021 | Acry_R0034 | - | 02 Ala tRNA
|

2011118 | 2011191 | - | 74 | 148259021 | Acry_R0035 | - | 14 Ile tRNA
|

2011416 | 2012908 | - | 1493 | 148259021 | Acry_R0036 | - | 16S ribosomal RNA |

2182743 | 2182818 | - | 76 | 148259021 | Acry_R0037 | - | 17 Phe tRNA
|

2193703 | 2193808 | - | 106 | 148259021 | Acry_R0038 | - | SRP RNA; RNA component of signal recognition particle |

2207609 | 2207682 | + | 74 | 148259021 | Acry_R0039 | - | 05 Gln tRNA
|

2351947 | 2352023 | + | 77 | 148259021 | Acry_R0040 | - | 11 Arg tRNA
|

2521461 | 2521546 | - | 86 | 148259021 | Acry_R0041 | - | 15 Leu tRNA
|

2523927 | 2524019 | + | 93 | 148259021 | Acry_R0042 | - | 08 Ser tRNA
|

2585597 | 2585673 | - | 77 | 148259021 | Acry_R0043 | - | 16 Met tRNA
|

2585692 | 2585819 | - | 128 | 148259021 | Acry_R0044 | - | 5S ribosomal RNA |

2585908 | 2588643 | - | 2736 | 148259021 | Acry_R0045 | - | 23S ribosomal RNA |

2589080 | 2589152 | - | 73 | 148259021 | Acry_R0046 | - | 02 Ala tRNA
|

2589273 | 2589346 | - | 74 | 148259021 | Acry_R0047 | - | 14 Ile tRNA
|

2589571 | 2591063 | - | 1493 | 148259021 | Acry_R0048 | - | 16S ribosomal RNA |

2682423 | 2682496 | - | 74 | 148259021 | Acry_R0049 | - | 01 Gly tRNA
|

2743548 | 2743623 | - | 76 | 148259021 | Acry_R0050 | - | 16 Met tRNA
|

2915409 | 2915484 | - | 76 | 148259021 | Acry_R0051 | - | 02 Ala tRNA
|

2978235 | 2978310 | + | 76 | 148259021 | Acry_R0052 | - | 04 Glu tRNA
|

3076810 | 3076884 | + | 75 | 148259021 | Acry_R0053 | - | 13 Val tRNA
|

3081831 | 3081907 | - | 77 | 148259021 | Acry_R0054 | - | 11 Arg tRNA
|

3151334 | 3151671 | + | 338 | 148259021 | Acry_R0055 | - | RNase P |

3177382 | 3177457 | - | 76 | 148259021 | Acry_R0056 | - | 07 Asn tRNA
|