Материалы:NC 007912

LOCUS NC_007912 5057531 bp DNA circular BCT 03-APR-2006 DEFINITION Saccharophagus degradans 2-40, complete genome. ACCESSION NC_007912 VERSION NC_007912.1 GI:90019649 KEYWORDS . SOURCE Saccharophagus degradans 2-40 ORGANISM Saccharophagus degradans 2-40 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharophagus. REFERENCE 1 (bases 1 to 5057531) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A., Richardson,P. and Weiner,R. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Saccharophagus degradans 2-40 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5057531) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-MAR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5057531) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Saunders,E.H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000282. URL -- http://www.jgi.doe.gov JGI Project ID: 2662192 Source DNA and bacteria available from Ronald Weiner (rw19@umail.umd.edu) Contacts: Ronald Wiener (rw19@umail.umd.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

231625 | 231701 | - | 77 | 90019649 | Sde_R0001 | - | 11 Arg tRNA
|

337690 | 337765 | + | 76 | 90019649 | Sde_R0002 | - | 07 Asn tRNA
|

339669 | 339741 | + | 73 | 90019649 | Sde_R0003 | - | 09 His tRNA
|

420943 | 421018 | - | 76 | 90019649 | Sde_R0004 | - | 17 Phe tRNA
|

925996 | 926072 | - | 77 | 90019649 | Sde_R0005 | - | 16 Met tRNA
|

1090732 | 1091036 | + | 305 | 90019649 | Sde_R0006 | - | RNA component of RNaseP |

1183544 | 1183619 | + | 76 | 90019649 | Sde_R0007 | - | 12 Thr tRNA
|

1183659 | 1183742 | + | 84 | 90019649 | Sde_R0008 | - | 18 Tyr tRNA
|

1183911 | 1183984 | + | 74 | 90019649 | Sde_R0009 | - | 01 Gly tRNA
|

1184012 | 1184087 | + | 76 | 90019649 | Sde_R0010 | - | 12 Thr tRNA
|

1184174 | 1184249 | + | 76 | 90019649 | Sde_R0011 | - | 20 Trp tRNA
|

1353012 | 1353098 | - | 87 | 90019649 | Sde_R0012 | - | 15 Leu tRNA
|

1409844 | 1411338 | + | 1495 | 90019649 | Sde_R0013 | - | 16S ribosomal RNA |

1414219 | 1417090 | + | 2872 | 90019649 | Sde_R0014 | - | 23S ribosomal RNA |

1417439 | 1417553 | + | 115 | 90019649 | Sde_R0015 | - | 5S ribosomal RNA |

1504707 | 1504782 | + | 76 | 90019649 | Sde_R0016 | - | 04 Glu tRNA
|

1504784 | 1504858 | + | 75 | 90019649 | Sde_R0017 | - | 01 Gly tRNA
|

1511552 | 1511639 | + | 88 | 90019649 | Sde_R0018 | - | 08 Ser tRNA
|

1692132 | 1692221 | + | 90 | 90019649 | Sde_R0019 | - | 08 Ser tRNA
|

1692957 | 1693033 | + | 77 | 90019649 | Sde_R0020 | - | 11 Arg tRNA
|

1729370 | 1729479 | + | 110 | 90019649 | Sde_R0021 | - | SRP RNA; RNA component of signal recognitionparticle |

1820547 | 1820633 | - | 87 | 90019649 | Sde_R0022 | - | 15 Leu tRNA
|

1929232 | 1929307 | + | 76 | 90019649 | Sde_R0023 | - | 02 Ala tRNA
|

2024147 | 2024222 | - | 76 | 90019649 | Sde_R0024 | - | 07 Asn tRNA
|

2024337 | 2024413 | - | 77 | 90019649 | Sde_R0025 | - | 13 Val tRNA
|

2035241 | 2035317 | + | 77 | 90019649 | Sde_R0026 | - | 03 Pro tRNA
|

2065737 | 2065821 | + | 85 | 90019649 | Sde_R0027 | - | 15 Leu tRNA
|

2080810 | 2080897 | - | 88 | 90019649 | Sde_R0028 | - | 08 Ser tRNA
|

2203011 | 2203086 | + | 76 | 90019649 | Sde_R0029 | - | 13 Val tRNA
|

2203134 | 2203210 | + | 77 | 90019649 | Sde_R0030 | - | 06 Asp tRNA
|

2367920 | 2367996 | - | 77 | 90019649 | Sde_R0031 | - | 06 Asp tRNA
|

2368044 | 2368119 | - | 76 | 90019649 | Sde_R0032 | - | 13 Val tRNA
|

2422138 | 2422214 | + | 77 | 90019649 | Sde_R0033 | - | 03 Pro tRNA
|

2422299 | 2422375 | + | 77 | 90019649 | Sde_R0034 | - | 11 Arg tRNA
|

2422402 | 2422477 | + | 76 | 90019649 | Sde_R0035 | - | 09 His tRNA
|

2631692 | 2631778 | - | 87 | 90019649 | Sde_R0036 | - | 15 Leu tRNA
|

2631844 | 2631917 | - | 74 | 90019649 | Sde_R0037 | - | 19 Cys tRNA
|

2823562 | 2823638 | + | 77 | 90019649 | Sde_R0038 | - | 11 Arg tRNA
|

3198142 | 3198217 | - | 76 | 90019649 | Sde_R0039 | - | 10 Lys tRNA
|

3198423 | 3198498 | - | 76 | 90019649 | Sde_R0040 | - | 10 Lys tRNA
|

3209322 | 3209436 | - | 115 | 90019649 | Sde_R0041 | - | 5S ribosomal RNA |

3209807 | 3212678 | - | 2872 | 90019649 | Sde_R0042 | - | 23S ribosomal RNA |

3213358 | 3214891 | - | 1534 | 90019649 | Sde_R0043 | - | 16S ribosomal RNA |

3213372 | 3213447 | - | 76 | 90019649 | Sde_R0044 | - | 02 Ala tRNA
|

3213458 | 3213534 | - | 77 | 90019649 | Sde_R0045 | - | 14 Ile tRNA
|

3439809 | 3439885 | - | 77 | 90019649 | Sde_R0046 | - | 16 Met tRNA
|

3443994 | 3444078 | - | 85 | 90019649 | Sde_R0047 | - | 15 Leu tRNA
|

3471683 | 3472071 | + | 389 | 90019649 | Sde_R0048 | - | tmRNA |

4154930 | 4155004 | + | 75 | 90019649 | Sde_R0049 | - | 05 Gln tRNA
|

4158804 | 4158880 | + | 77 | 90019649 | Sde_R0050 | - | 16 Met tRNA
|