Материалы:NC 008340

LOCUS NC_008340 3275944 bp DNA circular BCT 14-SEP-2006 DEFINITION Alkalilimnicola ehrlichei MLHE-1, complete genome. ACCESSION NC_008340 VERSION NC_008340.1 GI:114319166 KEYWORDS . SOURCE Alkalilimnicola ehrlichei MLHE-1 ORGANISM Alkalilimnicola ehrlichei MLHE-1 Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola. REFERENCE 1 (bases 1 to 3275944) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Oremland,R.S., Hoeft,S.E., Switzer-Blum,J., Kulp,T., King,G., Tabita,R., Witte,B., Santini,J.M., Basu,P., Hollibaugh,J.T., Xie,G., Stolz,J.F. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Alkalilimnicola ehrilichei MLHE-1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 3275944) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (13-SEP-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3275944) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Oremland,R.S., Hoeft,S.E., Switzer-Blum,J., Kulp,T., King,G., Tabita,R., Witte,B., Santini,J.M., Basu,P., Hollibaugh,J.T., Xie,G., Stolz,J.F. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (28-AUG-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000453. URL -- http://www.jgi.doe.gov JGI Project ID: 4000239 Source DNA and bacteria available from John F. Stolz (stolz@duq.edu) Contacts: John F. Stolz (stolz@duq.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

97604 | 97677 | + | 74 | 114319166 | Mlg_R0001 | - | 01 Gly tRNA
|

274056 | 274131 | - | 76 | 114319166 | Mlg_R0002 | - | 10 Lys tRNA
|

324945 | 325019 | + | 75 | 114319166 | Mlg_R0003 | - | 05 Gln tRNA
|

368208 | 369739 | + | 1532 | 114319166 | Mlg_R0004 | - | 16S ribosomal RNA |

369818 | 369894 | + | 77 | 114319166 | Mlg_R0005 | - | 14 Ile tRNA
|

370065 | 370140 | + | 76 | 114319166 | Mlg_R0006 | - | 02 Ala tRNA
|

370366 | 373263 | + | 2898 | 114319166 | Mlg_R0007 | - | 23S ribosomal RNA |

373383 | 373499 | + | 117 | 114319166 | Mlg_R0008 | - | 5S ribosomal RNA |

488343 | 489874 | + | 1532 | 114319166 | Mlg_R0009 | - | 16S ribosomal RNA |

489953 | 490029 | + | 77 | 114319166 | Mlg_R0010 | - | 14 Ile tRNA
|

490201 | 490276 | + | 76 | 114319166 | Mlg_R0011 | - | 02 Ala tRNA
|

490502 | 493399 | + | 2898 | 114319166 | Mlg_R0012 | - | 23S ribosomal RNA |

493519 | 493635 | + | 117 | 114319166 | Mlg_R0013 | - | 23S ribosomal RNA |

497459 | 497534 | + | 76 | 114319166 | Mlg_R0014 | - | 12 Thr tRNA
|

499602 | 499686 | + | 85 | 114319166 | Mlg_R0015 | - | 18 Tyr tRNA
|

499726 | 499799 | + | 74 | 114319166 | Mlg_R0016 | - | 01 Gly tRNA
|

499821 | 499896 | + | 76 | 114319166 | Mlg_R0017 | - | 12 Thr tRNA
|

501217 | 501292 | + | 76 | 114319166 | Mlg_R0018 | - | 20 Trp tRNA
|

539503 | 539578 | + | 76 | 114319166 | Mlg_R0019 | - | 12 Thr tRNA
|

610119 | 610193 | - | 75 | 114319166 | Mlg_R0020 | - | 04 Glu tRNA
|

629590 | 629676 | - | 87 | 114319166 | Mlg_R0021 | - | 15 Leu tRNA
|

643969 | 644045 | + | 77 | 114319166 | Mlg_R0022 | - | 03 Pro tRNA
|

644094 | 644170 | + | 77 | 114319166 | Mlg_R0023 | - | 11 Arg tRNA
|

644208 | 644283 | + | 76 | 114319166 | Mlg_R0024 | - | 09 His tRNA
|

644290 | 644365 | + | 76 | 114319166 | Mlg_R0025 | - | 10 Lys tRNA
|

680908 | 680984 | - | 77 | 114319166 | Mlg_R0026 | - | 11 Arg tRNA
|

697040 | 697115 | - | 76 | 114319166 | Mlg_R0027 | - | 02 Ala tRNA
|

847408 | 847484 | - | 77 | 114319166 | Mlg_R0028 | - | 03 Pro tRNA
|

887757 | 887833 | - | 77 | 114319166 | Mlg_R0029 | - | 13 Val tRNA
|

943640 | 943716 | - | 77 | 114319166 | Mlg_R0030 | - | 03 Pro tRNA
|

1160083 | 1160172 | + | 90 | 114319166 | Mlg_R0031 | - | 08 Ser tRNA
|

1248149 | 1248224 | - | 76 | 114319166 | Mlg_R0032 | - | 07 Asn tRNA
|

1415805 | 1415889 | - | 85 | 114319166 | Mlg_R0033 | - | 15 Leu tRNA
|

1495246 | 1495336 | + | 91 | 114319166 | Mlg_R0034 | - | 08 Ser tRNA
|

1504176 | 1504251 | + | 76 | 114319166 | Mlg_R0035 | - | 02 Ala tRNA
|

1504380 | 1504455 | + | 76 | 114319166 | Mlg_R0036 | - | 02 Ala tRNA
|

1561501 | 1561576 | + | 76 | 114319166 | Mlg_R0037 | - | 01 Gly tRNA
|

1561705 | 1561778 | + | 74 | 114319166 | Mlg_R0038 | - | 19 Cys tRNA
|

1561830 | 1561915 | + | 86 | 114319166 | Mlg_R0039 | - | 15 Leu tRNA
|

1690014 | 1690090 | - | 77 | 114319166 | Mlg_R0040 | - | 11 Arg tRNA
|

1690137 | 1690228 | - | 92 | 114319166 | Mlg_R0041 | - | 08 Ser tRNA
|

1723912 | 1724029 | - | 118 | 114319166 | Mlg_R0042 | - | SRP RNA; RNA component of signal recognition particle |

1774516 | 1774590 | - | 75 | 114319166 | Mlg_R0043 | - | 13 Val tRNA
|

1826410 | 1826497 | + | 88 | 114319166 | Mlg_R0044 | - | 08 Ser tRNA
|

1866616 | 1866691 | - | 76 | 114319166 | Mlg_R0045 | - | 04 Glu tRNA
|

2175428 | 2175783 | + | 356 | 114319166 | Mlg_R0057 | - | tmRNA |

2219534 | 2219610 | - | 77 | 114319166 | Mlg_R0046 | - | 16 Met tRNA
|

2240609 | 2240693 | - | 85 | 114319166 | Mlg_R0047 | - | 15 Leu tRNA
|

2509761 | 2510058 | - | 298 | 114319166 | Mlg_R0048 | - | RNA component of RNaseP |

2543728 | 2543801 | - | 74 | 114319166 | Mlg_R0049 | - | 05 Gln tRNA
|

2591270 | 2591346 | - | 77 | 114319166 | Mlg_R0050 | - | 06 Asp tRNA
|

2591360 | 2591435 | - | 76 | 114319166 | Mlg_R0051 | - | 13 Val tRNA
|

2598588 | 2598674 | - | 87 | 114319166 | Mlg_R0052 | - | 15 Leu tRNA
|

2859072 | 2859148 | - | 77 | 114319166 | Mlg_R0053 | - | 16 Met tRNA
|

3044231 | 3044307 | - | 77 | 114319166 | Mlg_R0054 | - | 11 Arg tRNA
|

3058396 | 3058471 | + | 76 | 114319166 | Mlg_R0055 | - | 17 Phe tRNA
|

3081898 | 3081974 | - | 77 | 114319166 | Mlg_R0056 | - | 16 Met tRNA
|