Материалы:NC 008789

LOCUS NC_008789 2678452 bp DNA circular BCT 13-JAN-2007 DEFINITION Halorhodospira halophila SL1, complete genome. ACCESSION NC_008789 VERSION NC_008789.1 GI:121996810 KEYWORDS . SOURCE Halorhodospira halophila SL1 ORGANISM Halorhodospira halophila SL1 Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira. REFERENCE 1 (bases 1 to 2678452) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hoff,W. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Halorhodospira halophila SL1 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2678452) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (12-JAN-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2678452) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Hoff,W. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (22-DEC-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000544. URL -- http://www.jgi.doe.gov JGI Project ID: 4000187 Source DNA and bacteria available from Wouter Hoff (whoff@midway.uchicago.edu) Contacts: Wouter Hoff (whoff@midway.uchicago.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

22358 | 22431 | + | 74 | 121996810 | Hhal_R0001 | - | 19 Cys tRNA
|

22494 | 22578 | + | 85 | 121996810 | Hhal_R0002 | - | 15 Leu tRNA
|

119800 | 119876 | - | 77 | 121996810 | Hhal_R0003 | - | 04 Glu tRNA
|

234447 | 234536 | - | 90 | 121996810 | Hhal_R0004 | - | 08 Ser tRNA
|

267061 | 267178 | - | 118 | 121996810 | Hhal_R0005 | - | SRP RNA |

267185 | 267272 | - | 88 | 121996810 | Hhal_R0006 | - | 08 Ser tRNA
|

376737 | 376853 | - | 117 | 121996810 | Hhal_R0007 | - | 5S ribosomal RNA |

376939 | 379842 | - | 2904 | 121996810 | Hhal_R0008 | - | 23S ribosomal RNA |

380025 | 381562 | - | 1538 | 121996810 | Hhal_R0009 | - | 16S ribosomal RNA |

494451 | 494527 | + | 77 | 121996810 | Hhal_R0010 | - | 13 Val tRNA
|

501892 | 501968 | + | 77 | 121996810 | Hhal_R0011 | - | 03 Pro tRNA
|

614224 | 614298 | + | 75 | 121996810 | Hhal_R0012 | - | 07 Asn tRNA
|

677797 | 677873 | - | 77 | 121996810 | Hhal_R0013 | - | 06 Asp tRNA
|

677921 | 677996 | - | 76 | 121996810 | Hhal_R0014 | - | 13 Val tRNA
|

684545 | 684634 | - | 90 | 121996810 | Hhal_R0015 | - | 15 Leu tRNA
|

689998 | 690074 | + | 77 | 121996810 | Hhal_R0016 | - | 03 Pro tRNA
|

690116 | 690192 | + | 77 | 121996810 | Hhal_R0017 | - | 11 Arg tRNA
|

690228 | 690303 | + | 76 | 121996810 | Hhal_R0018 | - | 09 His tRNA
|

690405 | 690480 | + | 76 | 121996810 | Hhal_R0019 | - | 10 Lys tRNA
|

742426 | 742512 | + | 87 | 121996810 | Hhal_R0020 | - | 15 Leu tRNA
|

760849 | 760923 | + | 75 | 121996810 | Hhal_R0021 | - | 04 Glu tRNA
|

816303 | 816378 | + | 76 | 121996810 | Hhal_R0022 | - | 02 Ala tRNA
|

824039 | 824115 | - | 77 | 121996810 | Hhal_R0023 | - | 11 Arg tRNA
|

944492 | 944567 | - | 76 | 121996810 | Hhal_R0024 | - | 20 Trp tRNA
|

945881 | 945956 | - | 76 | 121996810 | Hhal_R0025 | - | 12 Thr tRNA
|

945995 | 946068 | - | 74 | 121996810 | Hhal_R0026 | - | 01 Gly tRNA
|

946130 | 946214 | - | 85 | 121996810 | Hhal_R0027 | - | 18 Tyr tRNA
|

946263 | 946338 | - | 76 | 121996810 | Hhal_R0028 | - | 12 Thr tRNA
|

948747 | 948863 | - | 117 | 121996810 | Hhal_R0029 | - | 5S ribosomal RNA |

948948 | 951851 | - | 2904 | 121996810 | Hhal_R0030 | - | 23S ribosomal RNA |

952021 | 952096 | - | 76 | 121996810 | Hhal_R0031 | - | 02 Ala tRNA
|

952108 | 952184 | - | 77 | 121996810 | Hhal_R0032 | - | 14 Ile tRNA
|

952248 | 953785 | - | 1538 | 121996810 | Hhal_R0033 | - | 16S ribosomal RNA |

1058093 | 1058169 | - | 77 | 121996810 | Hhal_R0034 | - | 16 Met tRNA
|

1062168 | 1062242 | - | 75 | 121996810 | Hhal_R0035 | - | 05 Gln tRNA
|

1194816 | 1194891 | + | 76 | 121996810 | Hhal_R0036 | - | 16 Met tRNA
|

1237862 | 1237938 | - | 77 | 121996810 | Hhal_R0037 | - | 11 Arg tRNA
|

1242463 | 1242538 | + | 76 | 121996810 | Hhal_R0038 | - | 17 Phe tRNA
|

1386854 | 1386929 | - | 76 | 121996810 | Hhal_R0039 | - | 02 Ala tRNA
|

1388532 | 1388606 | + | 75 | 121996810 | Hhal_R0040 | - | 13 Val tRNA
|

1605457 | 1605810 | + | 354 | 121996810 | Hhal_R0042 | - | tmRNA |

1721851 | 1721927 | - | 77 | 121996810 | Hhal_R0043 | - | 16 Met tRNA
|

1803569 | 1803645 | - | 77 | 121996810 | Hhal_R0044 | - | 11 Arg tRNA
|

1803697 | 1803786 | - | 90 | 121996810 | Hhal_R0045 | - | 08 Ser tRNA
|

1877309 | 1877394 | + | 86 | 121996810 | Hhal_R0046 | - | 15 Leu tRNA
|

1924613 | 1924689 | - | 77 | 121996810 | Hhal_R0047 | - | 16 Met tRNA
|

1939575 | 1939659 | - | 85 | 121996810 | Hhal_R0048 | - | 15 Leu tRNA
|

1998217 | 1998292 | + | 76 | 121996810 | Hhal_R0049 | - | 12 Thr tRNA
|

2020663 | 2020739 | - | 77 | 121996810 | Hhal_R0050 | - | 03 Pro tRNA
|

2046979 | 2047067 | + | 89 | 121996810 | Hhal_R0051 | - | 08 Ser tRNA
|

2280907 | 2280980 | - | 74 | 121996810 | Hhal_R0052 | - | 05 Gln tRNA
|

2306516 | 2306817 | + | 302 | 121996810 | Hhal_R0053 | - | RnaseP RNA |

2348651 | 2348725 | - | 75 | 121996810 | Hhal_R0054 | - | 01 Gly tRNA
|

2433936 | 2434008 | + | 73 | 121996810 | Hhal_R0055 | - | 10 Lys tRNA
|

2637699 | 2637772 | + | 74 | 121996810 | Hhal_R0057 | - | 01 Gly tRNA
|