Материалы:NC 009778

```
LOCUS NC_009778 4368373 bp DNA circular BCT 07-SEP-2007
DEFINITION Enterobacter sakazakii ATCC BAA-894, complete genome.
ACCESSION NC_009778
VERSION NC_009778.1 GI:156932229
KEYWORDS .
SOURCE Enterobacter sakazakii ATCC BAA-894
ORGANISM Enterobacter sakazakii ATCC BAA-894
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Cronobacter.
REFERENCE 1 (bases 1 to 4368373)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (06-SEP-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 2 (bases 1 to 4368373)
AUTHORS McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
Clifton,W.S., Latreille,P., Courtney,L., Pepin,K., Bhonagiri,V.,
Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
CONSRTM The Enterobacter sakazakii Genome Sequencing Project
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2007) Genetics, Genome Sequencing Center, 4444
Forest Park Parkway, St. Louis, MO 63108, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000783.
E. sakazakii--Enterobacter sakazakii is rarely encountered in
clinical specimens, and is more prevalent in the environment and in
food. However, Enterobacter sakazakii is strongly implicated in
food borne diseases causing severe meningitis or enteritis,
especially in neonates and infants (Nazarowec-White and Farber, Int
J FoodMicrobiol. 1997 Feb;34(2):103-13).
The strain of Enterobacter sakazakii being sequenced was isolated
from powdered milk formula fed to a hospitalized neonate that
developed an infection (Centers for Disease Control and
Prevention). It is available from the American Type Culture
Collection as ATCC BAA-894 or from the Salmonella Genetic Stock
Centre as SGSC4695. The genome was sequenced to 8X coverage, using
plasmid and fosmid libraries, and was finished to an error rate of
less than 1 per 10,000 bases. Automated annotation was performed
and manual annotation will continue in the labs of Michael
McClelland and Kenneth Sanderson. The National Institute of Allergy
and Infectious Diseases (NIAID), National Institutes of Health
(NIH) has funded this project.
Coding sequences below are predicted using GeneMark v3.3 and
Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and
Glimmer2 were blasted against NCBI's non-redundant (NR) database
and predictions generated based on protein alignments. RNA genes
were determined using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
was finished as follows unless otherwise noted: all regions were
double stranded, sequenced with an alternate chemistries or covered
by high quality data(i.e., phred quality >=30);an attempt was made
to resolve all sequencing problems, such as compressions and
repeats; all regionswere covered by sequence from more than one m13
subclone.
COMPLETENESS: full length.
```



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

24930 | 25461 | + | 532 | 156932229 | ESA_00047 | - | small subunit ribosomal RNA |

26515 | 26588 | + | 74 | 156932229 | ESA_00048 | - | 14 Ile tRNA
|

26703 | 26775 | + | 73 | 156932229 | ESA_00049 | - | 02 Ala tRNA
|

29940 | 30055 | + | 116 | 156932229 | ESA_00051 | - | 5S ribosomal RNA |

133135 | 133207 | - | 73 | 156932229 | ESA_00146 | - | 17 Phe tRNA
|

157866 | 157938 | + | 73 | 156932229 | ESA_00172 | - | 01 Gly tRNA
|

157976 | 158048 | + | 73 | 156932229 | ESA_00173 | - | 01 Gly tRNA
|

158085 | 158157 | + | 73 | 156932229 | ESA_00174 | - | 01 Gly tRNA
|

287435 | 287507 | - | 73 | 156932229 | ESA_00311 | - | 17 Phe tRNA
|

324788 | 324860 | - | 73 | 156932229 | ESA_00352 | - | 16 Met tRNA
|

395295 | 395478 | - | 184 | 156932229 | ESA_00417 | - | 6S / SsrS RNA |

419832 | 419902 | + | 71 | 156932229 | ESA_00444 | - | 01 Gly tRNA
|

443904 | 443986 | + | 83 | 156932229 | ESA_00471 | - | SraE/RygA/RygB family RNA |

472501 | 472574 | - | 74 | 156932229 | ESA_00495 | - | 16 Met tRNA
|

472619 | 472692 | - | 74 | 156932229 | ESA_00496 | - | 16 Met tRNA
|

477054 | 477199 | - | 146 | 156932229 | ESA_00502 | - | GcvB RNA |

487253 | 487598 | + | 346 | 156932229 | ESA_00513 | - | CsrB/RsmB RNA family |

545730 | 545819 | + | 90 | 156932229 | ESA_00572 | - | 08 Ser tRNA
|

545827 | 545900 | + | 74 | 156932229 | ESA_00573 | - | 11 Arg tRNA
|

545966 | 546039 | + | 74 | 156932229 | ESA_00574 | - | 11 Arg tRNA
|

546235 | 546308 | + | 74 | 156932229 | ESA_00575 | - | 11 Arg tRNA
|

546374 | 546447 | + | 74 | 156932229 | ESA_00576 | - | 11 Arg tRNA
|

549429 | 549503 | - | 75 | 156932229 | ESA_00580 | - | SraD RNA |

602001 | 602363 | - | 363 | 156932229 | ESA_00631 | - | tmRNA |

629793 | 630324 | + | 532 | 156932229 | ESA_00663 | - | small subunit ribosomal RNA |

631378 | 631451 | + | 74 | 156932229 | ESA_00664 | - | 14 Ile tRNA
|

631488 | 631560 | + | 73 | 156932229 | ESA_00665 | - | 02 Ala tRNA
|

634728 | 634843 | + | 116 | 156932229 | ESA_00668 | - | 5S ribosomal RNA |

658250 | 658415 | + | 166 | 156932229 | ESA_00692 | - | rncO |

672564 | 672711 | - | 148 | 156932229 | ESA_00705 | - | tke1 RNA |

810614 | 810686 | - | 73 | 156932229 | ESA_00837 | - | 10 Lys tRNA
|

810694 | 810766 | - | 73 | 156932229 | ESA_00838 | - | 13 Val tRNA
|

810818 | 810890 | - | 73 | 156932229 | ESA_00839 | - | 13 Val tRNA
|

810934 | 811006 | - | 73 | 156932229 | ESA_00840 | - | 13 Val tRNA
|

813681 | 813753 | + | 73 | 156932229 | ESA_00844 | - | 02 Ala tRNA
|

813801 | 813873 | + | 73 | 156932229 | ESA_00845 | - | 02 Ala tRNA
|

837242 | 837313 | - | 72 | 156932229 | ESA_00866 | - | 11 Arg tRNA
|

948230 | 948323 | - | 94 | 156932229 | ESA_00973 | - | MicF RNA |

1009913 | 1009986 | - | 74 | 156932229 | ESA_01047 | - | 03 Pro tRNA
|

1099136 | 1099221 | - | 86 | 156932229 | ESA_01137 | - | RyeE RNA |

1181722 | 1181794 | - | 73 | 156932229 | ESA_01213 | - | 07 Asn tRNA
|

1190130 | 1190202 | - | 73 | 156932229 | ESA_01219 | - | 07 Asn tRNA
|

1194646 | 1194718 | - | 73 | 156932229 | ESA_01223 | - | 07 Asn tRNA
|

1198640 | 1198712 | - | 73 | 156932229 | ESA_01227 | - | 07 Asn tRNA
|

1199705 | 1199791 | + | 87 | 156932229 | ESA_01229 | - | 08 Ser tRNA
|

1272530 | 1272602 | + | 73 | 156932229 | ESA_01312 | - | 01 Gly tRNA
|

1272745 | 1272828 | + | 84 | 156932229 | ESA_01313 | - | 15 Leu tRNA
|

1356623 | 1356873 | - | 251 | 156932229 | ESA_01403 | - | SraC/RyeA RNA |

1356732 | 1356831 | + | 100 | 156932229 | ESA_01402 | - | RyeB RNA |

1477126 | 1477207 | - | 82 | 156932229 | ESA_01526 | - | 18 Tyr tRNA
|

1477244 | 1477413 | - | 170 | 156932229 | ESA_01527 | - | RtT RNA |

1477422 | 1477503 | - | 82 | 156932229 | ESA_01528 | - | 18 Tyr tRNA
|

1477532 | 1477709 | - | 178 | 156932229 | ESA_01529 | - | RtT RNA |

1963902 | 1963975 | + | 74 | 156932229 | ESA_02029 | - | 13 Val tRNA
|

1963988 | 1964061 | + | 74 | 156932229 | ESA_02030 | - | 13 Val tRNA
|

2048085 | 2048192 | + | 108 | 156932229 | ESA_02099 | - | RprA RNA |

2279690 | 2279774 | + | 85 | 156932229 | ESA_02346 | - | 08 Ser tRNA
|

2282784 | 2282868 | + | 85 | 156932229 | ESA_02348 | - | 08 Ser tRNA
|

2311040 | 2311124 | - | 85 | 156932229 | ESA_02377 | - | 08 Ser tRNA
|

2437466 | 2437544 | + | 79 | 156932229 | ESA_02489 | - | RybB RNA |

2550071 | 2550143 | - | 73 | 156932229 | ESA_02597 | - | 10 Lys tRNA
|

2550243 | 2550315 | - | 73 | 156932229 | ESA_02598 | - | 10 Lys tRNA
|

2550397 | 2550469 | - | 73 | 156932229 | ESA_02599 | - | 10 Lys tRNA
|

2550476 | 2550548 | - | 73 | 156932229 | ESA_02600 | - | 13 Val tRNA
|

2550659 | 2550731 | - | 73 | 156932229 | ESA_02601 | - | 10 Lys tRNA
|

2622017 | 2622090 | + | 74 | 156932229 | ESA_02666 | - | 16 Met tRNA
|

2622102 | 2622183 | + | 82 | 156932229 | ESA_02667 | - | 15 Leu tRNA
|

2622209 | 2622280 | + | 72 | 156932229 | ESA_02668 | - | 05 Gln tRNA
|

2622320 | 2622391 | + | 72 | 156932229 | ESA_02669 | - | 05 Gln tRNA
|

2622425 | 2622498 | + | 74 | 156932229 | ESA_02670 | - | 16 Met tRNA
|

2622564 | 2622635 | + | 72 | 156932229 | ESA_02672 | - | 05 Gln tRNA
|

2622730 | 2622801 | + | 72 | 156932229 | ESA_02673 | - | 05 Gln tRNA
|

2631290 | 2631451 | + | 162 | 156932229 | ESA_02681 | - | SroC RNA |

2701466 | 2701539 | - | 74 | 156932229 | ESA_02755 | - | 11 Arg tRNA
|

2728530 | 2728613 | - | 84 | 156932229 | ESA_02782 | - | SroB RNA |

2776825 | 2776922 | - | 98 | 156932229 | ESA_02828 | - | bacterial signal recognition particle RNA |

3025398 | 3025470 | - | 73 | 156932229 | ESA_03108 | - | 12 Thr tRNA
|

3040743 | 3040816 | - | 74 | 156932229 | ESA_03123 | - | 06 Asp tRNA
|

3048943 | 3049016 | - | 74 | 156932229 | ESA_03133 | - | 06 Asp tRNA
|

3049071 | 3049186 | - | 116 | 156932229 | ESA_03134 | - | 5S ribosomal RNA |

3052387 | 3052459 | - | 73 | 156932229 | ESA_03136 | - | 04 Glu tRNA
|

3053523 | 3054054 | - | 532 | 156932229 | ESA_03137 | - | small subunit ribosomal RNA |

3089214 | 3089341 | - | 128 | 156932229 | ESA_03174 | - | t44 RNA |

3322405 | 3322487 | + | 83 | 156932229 | ESA_03382 | - | 15 Leu tRNA
|

3322523 | 3322605 | + | 83 | 156932229 | ESA_03383 | - | 15 Leu tRNA
|

3322639 | 3322721 | + | 83 | 156932229 | ESA_03384 | - | 15 Leu tRNA
|

3378091 | 3378172 | - | 82 | 156932229 | ESA_03435 | - | 15 Leu tRNA
|

3478054 | 3478356 | - | 303 | 156932229 | ESA_03534 | - | RNA component of RNase P |

3497697 | 3497865 | + | 169 | 156932229 | ESA_03558 | - | SraG RNA |

3504696 | 3504769 | - | 74 | 156932229 | ESA_03564 | - | 16 Met tRNA
|

3504832 | 3504915 | - | 84 | 156932229 | ESA_03565 | - | 15 Leu tRNA
|

3534272 | 3534387 | + | 116 | 156932229 | ESA_03602 | - | SraH RNA |

3604119 | 3604234 | - | 116 | 156932229 | ESA_03663 | - | 5S ribosomal RNA |

3604275 | 3604347 | - | 73 | 156932229 | ESA_03664 | - | 12 Thr tRNA
|

3604362 | 3604477 | - | 116 | 156932229 | ESA_03665 | - | 5S ribosomal RNA |

3607678 | 3607750 | - | 73 | 156932229 | ESA_03668 | - | 04 Glu tRNA
|

3608814 | 3609345 | - | 532 | 156932229 | ESA_03669 | - | small subunit ribosomal RNA |

3640439 | 3640511 | - | 73 | 156932229 | ESA_03700 | - | 12 Thr tRNA
|

3640521 | 3640592 | - | 72 | 156932229 | ESA_03701 | - | 01 Gly tRNA
|

3640704 | 3640785 | - | 82 | 156932229 | ESA_03702 | - | 18 Tyr tRNA
|

3640798 | 3640870 | - | 73 | 156932229 | ESA_03703 | - | 12 Thr tRNA
|

3644581 | 3644696 | - | 116 | 156932229 | ESA_03706 | - | 5S ribosomal RNA |

3647894 | 3647966 | - | 73 | 156932229 | ESA_03708 | - | 04 Glu tRNA
|

3649030 | 3649561 | - | 532 | 156932229 | ESA_03709 | - | small subunit ribosomal RNA |

3698667 | 3698837 | - | 171 | 156932229 | ESA_03757 | - | SraJ RNA |

3705297 | 3705370 | - | 74 | 156932229 | ESA_03760 | - | 03 Pro tRNA
|

3705410 | 3705492 | - | 83 | 156932229 | ESA_03761 | - | 15 Leu tRNA
|

3705518 | 3705590 | - | 73 | 156932229 | ESA_03762 | - | 09 His tRNA
|

3705648 | 3705721 | - | 74 | 156932229 | ESA_03763 | - | 11 Arg tRNA
|

3738718 | 3738790 | - | 73 | 156932229 | ESA_03792 | - | 20 Trp tRNA
|

3738802 | 3738875 | - | 74 | 156932229 | ESA_03793 | - | 06 Asp tRNA
|

3738930 | 3739045 | - | 116 | 156932229 | ESA_03794 | - | 5S ribosomal RNA |

3742210 | 3742282 | - | 73 | 156932229 | ESA_03796 | - | 02 Ala tRNA
|

3742319 | 3742392 | - | 74 | 156932229 | ESA_03797 | - | 14 Ile tRNA
|

3743446 | 3743977 | - | 532 | 156932229 | ESA_03798 | - | small subunit ribosomal RNA |

3976772 | 3977303 | + | 532 | 156932229 | ESA_04030 | - | small subunit ribosomal RNA |

3978367 | 3978439 | + | 73 | 156932229 | ESA_04031 | - | 04 Glu tRNA
|

3978644 | 3981547 | + | 2904 | 156932229 | ESA_04408 | - | 23S ribosomal RNA |

3981639 | 3981754 | + | 116 | 156932229 | ESA_04032 | - | 5S ribosomal RNA |

3989372 | 3989490 | + | 119 | 156932229 | ESA_04041 | - | Spot 42 RNA |

3990443 | 3990707 | + | 265 | 156932229 | ESA_04043 | - | CsrC RNA family |

4145660 | 4145733 | + | 74 | 156932229 | ESA_04189 | - | 03 Pro tRNA
|

4261429 | 4261510 | + | 82 | 156932229 | ESA_04298 | - | RyhB RNA |