Материалы:NC 009831

LOCUS NC_009831 5517674 bp DNA circular BCT 20-SEP-2007 DEFINITION Shewanella sediminis HAW-EB3, complete genome. ACCESSION NC_009831 VERSION NC_009831.1 GI:157373141 KEYWORDS . SOURCE Shewanella sediminis HAW-EB3 ORGANISM Shewanella sediminis HAW-EB3 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella. REFERENCE 1 (bases 1 to 5517674) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Zhao,J.-S. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Shewanella sediminis HAW-EB3 JOURNAL Unpublished REFERENCE 2 (bases 1 to 5517674) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-SEP-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5517674) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (29-AUG-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000821. URL -- http://www.jgi.doe.gov JGI Project ID: 4002758 Source DNA and bacteria available from Jian-Shen Zhao (Jian-Shen.Zhao@cnrc-nrc.gc.ca) Contacts: Jian-Shen Zhao (Jian-Shen.Zhao@cnrc-nrc.gc.ca) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

51967 | 53501 | + | 1535 | 157373141 | Ssed_R0001 | - | 16S ribosomal RNA |

53841 | 56736 | + | 2896 | 157373141 | Ssed_R0002 | - | 23S ribosomal RNA |

56874 | 56989 | + | 116 | 157373141 | Ssed_R0003 | - | 5S ribosomal RNA |

318985 | 320519 | + | 1535 | 157373141 | Ssed_R0004 | - | 16S ribosomal RNA |

320850 | 323745 | + | 2896 | 157373141 | Ssed_R0005 | - | 23S ribosomal RNA |

323884 | 323999 | + | 116 | 157373141 | Ssed_R0006 | - | 5S ribosomal RNA |

325699 | 327233 | + | 1535 | 157373141 | Ssed_R0007 | - | 16S ribosomal RNA |

327564 | 330459 | + | 2896 | 157373141 | Ssed_R0008 | - | 23S ribosomal RNA |

330598 | 330713 | + | 116 | 157373141 | Ssed_R0009 | - | 5S ribosomal RNA |

491508 | 493042 | + | 1535 | 157373141 | Ssed_R0010 | - | 16S ribosomal RNA |

493117 | 493193 | + | 77 | 157373141 | Ssed_R0011 | - | 14 Ile tRNA
|

493264 | 493339 | + | 76 | 157373141 | Ssed_R0012 | - | 02 Ala tRNA
|

493682 | 496577 | + | 2896 | 157373141 | Ssed_R0013 | - | 23S ribosomal RNA |

496718 | 496833 | + | 116 | 157373141 | Ssed_R0014 | - | 5S ribosomal RNA |

498850 | 500384 | + | 1535 | 157373141 | Ssed_R0015 | - | 16S ribosomal RNA |

500734 | 503629 | + | 2896 | 157373141 | Ssed_R0016 | - | 23S ribosomal RNA |

503768 | 503883 | + | 116 | 157373141 | Ssed_R0017 | - | 5S ribosomal RNA |

503973 | 504048 | + | 76 | 157373141 | Ssed_R0018 | - | 12 Thr tRNA
|

504068 | 504183 | + | 116 | 157373141 | Ssed_R0019 | - | 5S ribosomal RNA |

505889 | 507423 | + | 1535 | 157373141 | Ssed_R0020 | - | 16S ribosomal RNA |

507763 | 510658 | + | 2896 | 157373141 | Ssed_R0021 | - | 23S ribosomal RNA |

510797 | 510912 | + | 116 | 157373141 | Ssed_R0022 | - | 5S ribosomal RNA |

628361 | 628451 | + | 91 | 157373141 | Ssed_R0023 | - | 08 Ser tRNA
|

937820 | 937895 | + | 76 | 157373141 | Ssed_R0024 | - | 01 Gly tRNA
|

937947 | 938022 | + | 76 | 157373141 | Ssed_R0025 | - | 01 Gly tRNA
|

938037 | 938112 | + | 76 | 157373141 | Ssed_R0026 | - | 01 Gly tRNA
|

938127 | 938202 | + | 76 | 157373141 | Ssed_R0027 | - | 01 Gly tRNA
|

1272823 | 1272899 | - | 77 | 157373141 | Ssed_R0028 | - | 16 Met tRNA
|

1449742 | 1449817 | - | 76 | 157373141 | Ssed_R0029 | - | 12 Thr tRNA
|

1449858 | 1449933 | - | 76 | 157373141 | Ssed_R0030 | - | 17 Phe tRNA
|

1450602 | 1450677 | - | 76 | 157373141 | Ssed_R0031 | - | 12 Thr tRNA
|

1450718 | 1450793 | - | 76 | 157373141 | Ssed_R0032 | - | 17 Phe tRNA
|

1569189 | 1569280 | + | 92 | 157373141 | Ssed_R0033 | - | 08 Ser tRNA
|

1569303 | 1569379 | + | 77 | 157373141 | Ssed_R0034 | - | 11 Arg tRNA
|

1569415 | 1569491 | + | 77 | 157373141 | Ssed_R0035 | - | 11 Arg tRNA
|

1569526 | 1569602 | + | 77 | 157373141 | Ssed_R0036 | - | 11 Arg tRNA
|

1569678 | 1569754 | + | 77 | 157373141 | Ssed_R0037 | - | 11 Arg tRNA
|

1569777 | 1569868 | + | 92 | 157373141 | Ssed_R0038 | - | 08 Ser tRNA
|

1569993 | 1570069 | + | 77 | 157373141 | Ssed_R0039 | - | 11 Arg tRNA
|

1570115 | 1570191 | + | 77 | 157373141 | Ssed_R0040 | - | 11 Arg tRNA
|

1570281 | 1570357 | + | 77 | 157373141 | Ssed_R0041 | - | 11 Arg tRNA
|

1570404 | 1570480 | + | 77 | 157373141 | Ssed_R0042 | - | 11 Arg tRNA
|

1570569 | 1570645 | + | 77 | 157373141 | Ssed_R0043 | - | 11 Arg tRNA
|

1570667 | 1570758 | + | 92 | 157373141 | Ssed_R0044 | - | 08 Ser tRNA
|

1669017 | 1669370 | - | 354 | 157373141 | Ssed_R0045 | - | tmRNA |

1838054 | 1838130 | + | 77 | 157373141 | Ssed_R0046 | - | 03 Pro tRNA
|

1838221 | 1838297 | + | 77 | 157373141 | Ssed_R0047 | - | 11 Arg tRNA
|

1838306 | 1838381 | + | 76 | 157373141 | Ssed_R0048 | - | 09 His tRNA
|

1863525 | 1863639 | + | 115 | 157373141 | Ssed_R0049 | - | SRP RNA; RNA component of signal recognition particle |

2146027 | 2147561 | + | 1535 | 157373141 | Ssed_R0050 | - | 16S ribosomal RNA |

2147817 | 2147893 | + | 77 | 157373141 | Ssed_R0051 | - | 14 Ile tRNA
|

2148047 | 2148122 | + | 76 | 157373141 | Ssed_R0052 | - | 02 Ala tRNA
|

2148648 | 2151543 | + | 2896 | 157373141 | Ssed_R0053 | - | 23S ribosomal RNA |

2151655 | 2151770 | + | 116 | 157373141 | Ssed_R0054 | - | 5S ribosomal RNA |

2179302 | 2179378 | - | 77 | 157373141 | Ssed_R0055 | - | 03 Pro tRNA
|

2236549 | 2236624 | + | 76 | 157373141 | Ssed_R0056 | - | 10 Lys tRNA
|

2236695 | 2236770 | + | 76 | 157373141 | Ssed_R0057 | - | 10 Lys tRNA
|

2236886 | 2236961 | + | 76 | 157373141 | Ssed_R0058 | - | 10 Lys tRNA
|

2237027 | 2237102 | + | 76 | 157373141 | Ssed_R0059 | - | 10 Lys tRNA
|

2237218 | 2237293 | + | 76 | 157373141 | Ssed_R0060 | - | 10 Lys tRNA
|

2237354 | 2237429 | + | 76 | 157373141 | Ssed_R0061 | - | 10 Lys tRNA
|

2237624 | 2237699 | + | 76 | 157373141 | Ssed_R0062 | - | 10 Lys tRNA
|

2237751 | 2237826 | + | 76 | 157373141 | Ssed_R0063 | - | 10 Lys tRNA
|

2238021 | 2238096 | + | 76 | 157373141 | Ssed_R0064 | - | 10 Lys tRNA
|

2238149 | 2238224 | + | 76 | 157373141 | Ssed_R0065 | - | 10 Lys tRNA
|

2411914 | 2411990 | + | 77 | 157373141 | Ssed_R0066 | - | 06 Asp tRNA
|

2412060 | 2412136 | + | 77 | 157373141 | Ssed_R0067 | - | 06 Asp tRNA
|

2477261 | 2477336 | - | 76 | 157373141 | Ssed_R0068 | - | 07 Asn tRNA
|

2477372 | 2477447 | - | 76 | 157373141 | Ssed_R0069 | - | 07 Asn tRNA
|

2477476 | 2477551 | - | 76 | 157373141 | Ssed_R0070 | - | 07 Asn tRNA
|

2477576 | 2477651 | - | 76 | 157373141 | Ssed_R0071 | - | 07 Asn tRNA
|

2477689 | 2477764 | - | 76 | 157373141 | Ssed_R0072 | - | 07 Asn tRNA
|

2477805 | 2477880 | - | 76 | 157373141 | Ssed_R0073 | - | 07 Asn tRNA
|

2477933 | 2478008 | - | 76 | 157373141 | Ssed_R0074 | - | 07 Asn tRNA
|

2485108 | 2485192 | - | 85 | 157373141 | Ssed_R0075 | - | 18 Tyr tRNA
|

2485260 | 2485344 | - | 85 | 157373141 | Ssed_R0076 | - | 18 Tyr tRNA
|

2485415 | 2485499 | - | 85 | 157373141 | Ssed_R0077 | - | 18 Tyr tRNA
|

2485560 | 2485644 | - | 85 | 157373141 | Ssed_R0078 | - | 18 Tyr tRNA
|

2563331 | 2563407 | - | 77 | 157373141 | Ssed_R0079 | - | 13 Val tRNA
|

2563410 | 2563486 | - | 77 | 157373141 | Ssed_R0080 | - | 16 Met tRNA
|

2563681 | 2563757 | - | 77 | 157373141 | Ssed_R0081 | - | 13 Val tRNA
|

2563902 | 2563978 | - | 77 | 157373141 | Ssed_R0082 | - | 16 Met tRNA
|

2564024 | 2564100 | - | 77 | 157373141 | Ssed_R0083 | - | 16 Met tRNA
|

2564150 | 2564226 | - | 77 | 157373141 | Ssed_R0084 | - | 13 Val tRNA
|

2585839 | 2585929 | + | 91 | 157373141 | Ssed_R0085 | - | 08 Ser tRNA
|

2683689 | 2683774 | - | 86 | 157373141 | Ssed_R0086 | - | 15 Leu tRNA
|

2683861 | 2683934 | - | 74 | 157373141 | Ssed_R0087 | - | 19 Cys tRNA
|

2684202 | 2684277 | - | 76 | 157373141 | Ssed_R0088 | - | 01 Gly tRNA
|

2684729 | 2684814 | - | 86 | 157373141 | Ssed_R0089 | - | 15 Leu tRNA
|

2684901 | 2684974 | - | 74 | 157373141 | Ssed_R0090 | - | 19 Cys tRNA
|

2685016 | 2685091 | - | 76 | 157373141 | Ssed_R0091 | - | 01 Gly tRNA
|

2814787 | 2814876 | + | 90 | 157373141 | Ssed_R0092 | - | 08 Ser tRNA
|

2977712 | 2977797 | - | 86 | 157373141 | Ssed_R0093 | - | 15 Leu tRNA
|

2977882 | 2977955 | - | 74 | 157373141 | Ssed_R0094 | - | 19 Cys tRNA
|

2977986 | 2978061 | - | 76 | 157373141 | Ssed_R0095 | - | 01 Gly tRNA
|

2981892 | 2981982 | - | 91 | 157373141 | Ssed_R0096 | - | 08 Ser tRNA
|

2993210 | 2993300 | - | 91 | 157373141 | Ssed_R0097 | - | 08 Ser tRNA
|

3002743 | 3002819 | + | 77 | 157373141 | Ssed_R0098 | - | 16 Met tRNA
|

3002880 | 3002956 | + | 77 | 157373141 | Ssed_R0099 | - | 16 Met tRNA
|

3003172 | 3003248 | + | 77 | 157373141 | Ssed_R0100 | - | 16 Met tRNA
|

3003305 | 3003381 | + | 77 | 157373141 | Ssed_R0101 | - | 16 Met tRNA
|

3003496 | 3003572 | + | 77 | 157373141 | Ssed_R0102 | - | 16 Met tRNA
|

3511597 | 3511672 | - | 76 | 157373141 | Ssed_R0103 | - | 02 Ala tRNA
|

3511712 | 3511787 | - | 76 | 157373141 | Ssed_R0104 | - | 04 Glu tRNA
|

3511928 | 3512003 | - | 76 | 157373141 | Ssed_R0105 | - | 04 Glu tRNA
|

3512144 | 3512219 | - | 76 | 157373141 | Ssed_R0106 | - | 04 Glu tRNA
|

3512360 | 3512435 | - | 76 | 157373141 | Ssed_R0107 | - | 04 Glu tRNA
|

3512576 | 3512651 | - | 76 | 157373141 | Ssed_R0108 | - | 04 Glu tRNA
|

3512754 | 3512829 | - | 76 | 157373141 | Ssed_R0109 | - | 04 Glu tRNA
|

3512932 | 3513007 | - | 76 | 157373141 | Ssed_R0110 | - | 04 Glu tRNA
|

3513110 | 3513185 | - | 76 | 157373141 | Ssed_R0111 | - | 04 Glu tRNA
|

3513288 | 3513363 | - | 76 | 157373141 | Ssed_R0112 | - | 04 Glu tRNA
|

3513466 | 3513541 | - | 76 | 157373141 | Ssed_R0113 | - | 04 Glu tRNA
|

3513688 | 3513763 | - | 76 | 157373141 | Ssed_R0114 | - | 02 Ala tRNA
|

3515598 | 3515673 | + | 76 | 157373141 | Ssed_R0115 | - | 13 Val tRNA
|

3515721 | 3515796 | + | 76 | 157373141 | Ssed_R0116 | - | 13 Val tRNA
|

3515834 | 3515909 | + | 76 | 157373141 | Ssed_R0117 | - | 13 Val tRNA
|

3515947 | 3516022 | + | 76 | 157373141 | Ssed_R0118 | - | 13 Val tRNA
|

3516060 | 3516135 | + | 76 | 157373141 | Ssed_R0119 | - | 13 Val tRNA
|

3516173 | 3516248 | + | 76 | 157373141 | Ssed_R0120 | - | 13 Val tRNA
|

3516286 | 3516361 | + | 76 | 157373141 | Ssed_R0121 | - | 13 Val tRNA
|

3516399 | 3516474 | + | 76 | 157373141 | Ssed_R0122 | - | 13 Val tRNA
|

3516512 | 3516587 | + | 76 | 157373141 | Ssed_R0123 | - | 13 Val tRNA
|

3733990 | 3734065 | + | 76 | 157373141 | Ssed_R0124 | - | 11 Arg tRNA
|

4134579 | 4134655 | - | 77 | 157373141 | Ssed_R0125 | - | 16 Met tRNA
|

4134759 | 4134845 | - | 87 | 157373141 | Ssed_R0126 | - | 15 Leu tRNA
|

4220684 | 4220758 | - | 75 | 157373141 | Ssed_R0127 | - | 05 Gln tRNA
|

4220782 | 4220866 | - | 85 | 157373141 | Ssed_R0128 | - | 15 Leu tRNA
|

4220973 | 4221047 | - | 75 | 157373141 | Ssed_R0129 | - | 05 Gln tRNA
|

4221098 | 4221182 | - | 85 | 157373141 | Ssed_R0130 | - | 15 Leu tRNA
|

4221276 | 4221352 | - | 77 | 157373141 | Ssed_R0131 | - | 16 Met tRNA
|

4221370 | 4221444 | - | 75 | 157373141 | Ssed_R0132 | - | 05 Gln tRNA
|

4221495 | 4221579 | - | 85 | 157373141 | Ssed_R0133 | - | 15 Leu tRNA
|

4221701 | 4221777 | - | 77 | 157373141 | Ssed_R0134 | - | 16 Met tRNA
|

4252089 | 4252165 | - | 77 | 157373141 | Ssed_R0135 | - | 20 Trp tRNA
|

4253454 | 4253569 | - | 116 | 157373141 | Ssed_R0136 | - | 5S ribosomal RNA |

4253708 | 4256603 | - | 2896 | 157373141 | Ssed_R0137 | - | 23S ribosomal RNA |

4256952 | 4258488 | - | 1537 | 157373141 | Ssed_R0138 | - | 16S ribosomal RNA |

4266677 | 4266752 | + | 76 | 157373141 | Ssed_R0139 | - | 17 Phe tRNA
|

4536925 | 4537011 | + | 87 | 157373141 | Ssed_R0140 | - | 15 Leu tRNA
|

4901077 | 4901161 | - | 85 | 157373141 | Ssed_R0141 | - | 15 Leu tRNA
|

5093479 | 5093555 | - | 77 | 157373141 | Ssed_R0142 | - | 03 Pro tRNA
|

5093605 | 5093681 | - | 77 | 157373141 | Ssed_R0143 | - | 03 Pro tRNA
|

5093730 | 5093805 | - | 76 | 157373141 | Ssed_R0144 | - | 09 His tRNA
|

5093851 | 5093927 | - | 77 | 157373141 | Ssed_R0145 | - | 11 Arg tRNA
|

5221263 | 5221560 | - | 298 | 157373141 | Ssed_R0146 | - | RNA component of RNaseP |

5255523 | 5255638 | - | 116 | 157373141 | Ssed_R0147 | - | 5S ribosomal RNA |

5255750 | 5258645 | - | 2896 | 157373141 | Ssed_R0148 | - | 23S ribosomal RNA |

5258985 | 5260519 | - | 1535 | 157373141 | Ssed_R0149 | - | 16S ribosomal RNA |

5303338 | 5303411 | - | 74 | 157373141 | Ssed_R0150 | - | 01 Gly tRNA
|

5303447 | 5303531 | - | 85 | 157373141 | Ssed_R0151 | - | 18 Tyr tRNA
|

5303539 | 5303614 | - | 76 | 157373141 | Ssed_R0152 | - | 12 Thr tRNA
|

5307324 | 5307400 | - | 77 | 157373141 | Ssed_R0153 | - | 06 Asp tRNA
|

5307505 | 5307620 | - | 116 | 157373141 | Ssed_R0154 | - | 5S ribosomal RNA |

5307759 | 5310654 | - | 2896 | 157373141 | Ssed_R0155 | - | 23S ribosomal RNA |

5310997 | 5311072 | - | 76 | 157373141 | Ssed_R0156 | - | 02 Ala tRNA
|

5311143 | 5311219 | - | 77 | 157373141 | Ssed_R0157 | - | 14 Ile tRNA
|

5311294 | 5312828 | - | 1535 | 157373141 | Ssed_R0158 | - | 16S ribosomal RNA |

5465541 | 5465617 | - | 77 | 157373141 | Ssed_R0159 | - | 06 Asp tRNA
|

5465730 | 5465845 | - | 116 | 157373141 | Ssed_R0160 | - | 5S ribosomal RNA |

5465984 | 5468879 | - | 2896 | 157373141 | Ssed_R0161 | - | 23S ribosomal RNA |

5469219 | 5470753 | - | 1535 | 157373141 | Ssed_R0162 | - | 16S ribosomal RNA |

5472481 | 5472596 | - | 116 | 157373141 | Ssed_R0163 | - | 5S ribosomal RNA |

5472742 | 5475640 | - | 2899 | 157373141 | Ssed_R0164 | - | 23S ribosomal RNA |

5476002 | 5477536 | - | 1535 | 157373141 | Ssed_R0165 | - | 16S ribosomal RNA |