Материалы:NC 009487

LOCUS NC_009487 2906700 bp DNA circular BCT 08-AUG-2007 DEFINITION Staphylococcus aureus subsp. aureus JH9, complete genome. ACCESSION NC_009487 VERSION NC_009487.1 GI:148266447 KEYWORDS . SOURCE Staphylococcus aureus subsp. aureus JH9 ORGANISM Staphylococcus aureus subsp. aureus JH9 Bacteria; Firmicutes; Bacillales; Staphylococcus. REFERENCE 1 (bases 1 to 2906700) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tomasz,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome of Staphylococcus aureus subsp. aureus JH9 JOURNAL Unpublished REFERENCE 2 (bases 1 to 2906700) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2906700) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Tomasz,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (14-MAY-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000703. URL -- http://www.jgi.doe.gov JGI Project ID: 4001073 Source DNA and bacteria available from Alexander Tomasz (tomasz@rockefeller.edu) Contacts: Alexander Tomasz (tomasz@rockefeller.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

24215 | 24289 | + | 75 | 148266447 | SaurJH9_R0001 | - | 04 Glu tRNA
|

24297 | 24369 | + | 73 | 148266447 | SaurJH9_R0002 | - | 06 Asp tRNA
|

532173 | 532265 | + | 93 | 148266447 | SaurJH9_R0003 | - | 08 Ser tRNA
|

536798 | 536898 | + | 101 | 148266447 | SaurJH9_R0004 | - | SRP RNA; RNA component of signal recognitionparticle |

541421 | 542975 | + | 1555 | 148266447 | SaurJH9_R0005 | - | 16S ribosomal RNA |

543340 | 546262 | + | 2923 | 148266447 | SaurJH9_R0006 | - | 23S ribosomal RNA |

546334 | 546452 | + | 119 | 148266447 | SaurJH9_R0007 | - | 5S ribosomal RNA |

584769 | 584884 | + | 116 | 148266447 | SaurJH9_R0008 | - | 5S ribosomal RNA |

584894 | 584969 | + | 76 | 148266447 | SaurJH9_R0009 | - | 13 Val tRNA
|

584986 | 585061 | + | 76 | 148266447 | SaurJH9_R0010 | - | 12 Thr tRNA
|

585068 | 585140 | + | 73 | 148266447 | SaurJH9_R0011 | - | 10 Lys tRNA
|

585174 | 585248 | + | 75 | 148266447 | SaurJH9_R0012 | - | 01 Gly tRNA
|

585256 | 585344 | + | 89 | 148266447 | SaurJH9_R0013 | - | 15 Leu tRNA
|

585350 | 585426 | + | 77 | 148266447 | SaurJH9_R0014 | - | 11 Arg tRNA
|

585447 | 585520 | + | 74 | 148266447 | SaurJH9_R0015 | - | 03 Pro tRNA
|

585544 | 585619 | + | 76 | 148266447 | SaurJH9_R0016 | - | 02 Ala tRNA
|

585740 | 587294 | + | 1555 | 148266447 | SaurJH9_R0017 | - | 16S ribosomal RNA |

587764 | 590686 | + | 2923 | 148266447 | SaurJH9_R0018 | - | 23S ribosomal RNA |

590758 | 590876 | + | 119 | 148266447 | SaurJH9_R0019 | - | 5S ribosomal RNA |

591085 | 592639 | + | 1555 | 148266447 | SaurJH9_R0020 | - | 16S ribosomal RNA |

593004 | 595926 | + | 2923 | 148266447 | SaurJH9_R0021 | - | 23S ribosomal RNA |

596001 | 596114 | + | 114 | 148266447 | SaurJH9_R0022 | - | 5S ribosomal RNA |

869364 | 869435 | - | 72 | 148266447 | SaurJH9_R0023 | - | 11 Arg tRNA
|

885621 | 885979 | + | 359 | 148266447 | SaurJH9_R0024 | - | tmRNA |

1127273 | 1127361 | - | 89 | 148266447 | SaurJH9_R0025 | - | 08 Ser tRNA
|

1127364 | 1127438 | - | 75 | 148266447 | SaurJH9_R0026 | - | 07 Asn tRNA
|

1276772 | 1276845 | - | 74 | 148266447 | SaurJH9_R0027 | - | 11 Arg tRNA
|

1608572 | 1608919 | + | 348 | 148266447 | SaurJH9_R0028 | - | RNAseP RNA |

2004094 | 2004182 | - | 89 | 148266447 | SaurJH9_R0029 | - | 08 Ser tRNA
|

2004237 | 2004308 | - | 72 | 148266447 | SaurJH9_R0030 | - | 04 Glu tRNA
|

2004310 | 2004384 | - | 75 | 148266447 | SaurJH9_R0031 | - | 07 Asn tRNA
|

2004402 | 2004475 | - | 74 | 148266447 | SaurJH9_R0032 | - | 01 Gly tRNA
|

2004491 | 2004566 | - | 76 | 148266447 | SaurJH9_R0033 | - | 09 His tRNA
|

2004580 | 2004652 | - | 73 | 148266447 | SaurJH9_R0034 | - | 17 Phe tRNA
|

2004669 | 2004744 | - | 76 | 148266447 | SaurJH9_R0035 | - | 06 Asp tRNA
|

2004766 | 2004839 | - | 74 | 148266447 | SaurJH9_R0036 | - | 16 Met tRNA
|

2039984 | 2040067 | - | 84 | 148266447 | SaurJH9_R0037 | - | 15 Leu tRNA
|

2040106 | 2040180 | - | 75 | 148266447 | SaurJH9_R0038 | - | Xaa tRNA |

2040284 | 2040358 | - | 75 | 148266447 | SaurJH9_R0039 | - | 01 Gly tRNA
|

2040366 | 2040439 | - | 74 | 148266447 | SaurJH9_R0040 | - | 19 Cys tRNA
|

2040445 | 2040516 | - | 72 | 148266447 | SaurJH9_R0041 | - | 05 Gln tRNA
|

2040528 | 2040600 | - | 73 | 148266447 | SaurJH9_R0042 | - | 09 His tRNA
|

2040603 | 2040676 | - | 74 | 148266447 | SaurJH9_R0043 | - | 20 Trp tRNA
|

2040692 | 2040773 | - | 82 | 148266447 | SaurJH9_R0044 | - | 18 Tyr tRNA
|

2040779 | 2040854 | - | 76 | 148266447 | SaurJH9_R0045 | - | 12 Thr tRNA
|

2040862 | 2040934 | - | 73 | 148266447 | SaurJH9_R0046 | - | 17 Phe tRNA
|

2040953 | 2041028 | - | 76 | 148266447 | SaurJH9_R0047 | - | 06 Asp tRNA
|

2041050 | 2041123 | - | 74 | 148266447 | SaurJH9_R0048 | - | 16 Met tRNA
|

2041138 | 2041230 | - | 93 | 148266447 | SaurJH9_R0049 | - | 08 Ser tRNA
|

2041269 | 2041344 | - | 76 | 148266447 | SaurJH9_R0050 | - | 06 Asp tRNA
|

2041355 | 2041444 | - | 90 | 148266447 | SaurJH9_R0051 | - | 08 Ser tRNA
|

2041454 | 2041527 | - | 74 | 148266447 | SaurJH9_R0052 | - | 16 Met tRNA
|

2041553 | 2041629 | - | 77 | 148266447 | SaurJH9_R0053 | - | 16 Met tRNA
|

2041651 | 2041726 | - | 76 | 148266447 | SaurJH9_R0054 | - | 02 Ala tRNA
|

2041744 | 2041817 | - | 74 | 148266447 | SaurJH9_R0055 | - | 03 Pro tRNA
|

2041827 | 2041900 | - | 74 | 148266447 | SaurJH9_R0056 | - | 11 Arg tRNA
|

2041919 | 2042007 | - | 89 | 148266447 | SaurJH9_R0057 | - | 15 Leu tRNA
|

2042018 | 2042092 | - | 75 | 148266447 | SaurJH9_R0058 | - | 01 Gly tRNA
|

2042096 | 2042177 | - | 82 | 148266447 | SaurJH9_R0059 | - | 15 Leu tRNA
|

2042181 | 2042256 | - | 76 | 148266447 | SaurJH9_R0060 | - | 10 Lys tRNA
|

2042262 | 2042337 | - | 76 | 148266447 | SaurJH9_R0061 | - | 12 Thr tRNA
|

2042354 | 2042429 | - | 76 | 148266447 | SaurJH9_R0062 | - | 13 Val tRNA
|

2042440 | 2042553 | - | 114 | 148266447 | SaurJH9_R0063 | - | 5S ribosomal RNA |

2042628 | 2045550 | - | 2923 | 148266447 | SaurJH9_R0064 | - | 23S ribosomal RNA |

2045764 | 2045839 | - | 76 | 148266447 | SaurJH9_R0065 | - | 02 Ala tRNA
|

2045858 | 2045934 | - | 77 | 148266447 | SaurJH9_R0066 | - | 14 Ile tRNA
|

2046017 | 2047578 | - | 1562 | 148266447 | SaurJH9_R0067 | - | 16S ribosomal RNA |

2215389 | 2215502 | - | 114 | 148266447 | SaurJH9_R0068 | - | 5S ribosomal RNA |

2215577 | 2218499 | - | 2923 | 148266447 | SaurJH9_R0069 | - | 23S ribosomal RNA |

2218962 | 2220523 | - | 1562 | 148266447 | SaurJH9_R0070 | - | 16S ribosomal RNA |

2220641 | 2220714 | - | 74 | 148266447 | SaurJH9_R0071 | - | 01 Gly tRNA
|

2220733 | 2220818 | - | 86 | 148266447 | SaurJH9_R0072 | - | 15 Leu tRNA
|

2329960 | 2330035 | - | 76 | 148266447 | SaurJH9_R0073 | - | 10 Lys tRNA
|

2330039 | 2330113 | - | 75 | 148266447 | SaurJH9_R0074 | - | 05 Gln tRNA
|

2330123 | 2330206 | - | 84 | 148266447 | SaurJH9_R0075 | - | 18 Tyr tRNA
|

2330236 | 2330311 | - | 76 | 148266447 | SaurJH9_R0076 | - | 13 Val tRNA
|

2330319 | 2330390 | - | 72 | 148266447 | SaurJH9_R0077 | - | 04 Glu tRNA
|

2330392 | 2330466 | - | 75 | 148266447 | SaurJH9_R0078 | - | 07 Asn tRNA
|

2330475 | 2330593 | - | 119 | 148266447 | SaurJH9_R0079 | - | 5S ribosomal RNA |

2330664 | 2333586 | - | 2923 | 148266447 | SaurJH9_R0080 | - | 23S ribosomal RNA |

2334049 | 2335610 | - | 1562 | 148266447 | SaurJH9_R0081 | - | 16S ribosomal RNA |