Материалы:NC 007954

LOCUS NC_007954 4545906 bp DNA circular BCT 13-APR-2006 DEFINITION Shewanella denitrificans OS217, complete genome. ACCESSION NC_007954 VERSION NC_007954.1 GI:91791369 KEYWORDS . SOURCE Shewanella denitrificans OS217 ORGANISM Shewanella denitrificans OS217 Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella. REFERENCE 1 (bases 1 to 4545906) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of Shewanella denitrificans OS217 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4545906) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-APR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4545906) AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Lykidis,A. and Richardson,P. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (21-MAR-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000302. URL -- http://www.jgi.doe.gov JGI Project ID: 3634607 Source DNA available from Jim Fredrickson (jim.fredrickson@pnl.gov) Bacteria available from DSMZ: DSM 15013 Contacts: Jim Fredrickson (jim.fredrickson@pnl.gov) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

42596 | 44130 | + | 1535 | 91791369 | Sden_R0001 | - | 16S ribosomal RNA |

44667 | 47571 | + | 2905 | 91791369 | Sden_R0002 | - | 23S ribosomal RNA |

47825 | 47940 | + | 116 | 91791369 | Sden_R0003 | - | 5S ribosomal RNA |

178816 | 178891 | + | 76 | 91791369 | Sden_R0004 | - | 12 Thr tRNA
|

178901 | 178985 | + | 85 | 91791369 | Sden_R0005 | - | 18 Tyr tRNA
|

179022 | 179095 | + | 74 | 91791369 | Sden_R0006 | - | 01 Gly tRNA
|

260843 | 262377 | + | 1535 | 91791369 | Sden_R0007 | - | 16S ribosomal RNA |

262528 | 262604 | + | 77 | 91791369 | Sden_R0008 | - | 14 Ile tRNA
|

262736 | 262811 | + | 76 | 91791369 | Sden_R0009 | - | 02 Ala tRNA
|

263308 | 266212 | + | 2905 | 91791369 | Sden_R0010 | - | 23S ribosomal RNA |

266395 | 266510 | + | 116 | 91791369 | Sden_R0011 | - | 5S ribosomal RNA |

266570 | 266645 | + | 76 | 91791369 | Sden_R0012 | - | 12 Thr tRNA
|

266682 | 266797 | + | 116 | 91791369 | Sden_R0013 | - | 5S ribosomal RNA |

312089 | 312419 | + | 331 | 91791369 | Sden_R0014 | - | RNA component of RNaseP |

408546 | 410080 | + | 1535 | 91791369 | Sden_R0015 | - | 16S ribosomal RNA |

410634 | 413538 | + | 2905 | 91791369 | Sden_R0016 | - | 23S ribosomal RNA |

413748 | 413863 | + | 116 | 91791369 | Sden_R0017 | - | 5S ribosomal RNA |

413953 | 414029 | + | 77 | 91791369 | Sden_R0018 | - | 06 Asp tRNA
|

476436 | 476512 | + | 77 | 91791369 | Sden_R0019 | - | 11 Arg tRNA
|

476585 | 476660 | + | 76 | 91791369 | Sden_R0020 | - | 09 His tRNA
|

476790 | 476866 | + | 77 | 91791369 | Sden_R0021 | - | 03 Pro tRNA
|

477020 | 477096 | + | 77 | 91791369 | Sden_R0022 | - | 03 Pro tRNA
|

619708 | 619792 | + | 85 | 91791369 | Sden_R0023 | - | 15 Leu tRNA
|

784720 | 784884 | - | 165 | 91791369 | Sden_R0024 | - | |

842778 | 842933 | + | 156 | 91791369 | Sden_R0025 | - | |

939527 | 939603 | + | 77 | 91791369 | Sden_R0026 | - | 16 Met tRNA
|

939758 | 939842 | + | 85 | 91791369 | Sden_R0027 | - | 15 Leu tRNA
|

939891 | 939965 | + | 75 | 91791369 | Sden_R0028 | - | 05 Gln tRNA
|

939996 | 940070 | + | 75 | 91791369 | Sden_R0029 | - | 05 Gln tRNA
|

940089 | 940165 | + | 77 | 91791369 | Sden_R0030 | - | 16 Met tRNA
|

940259 | 940343 | + | 85 | 91791369 | Sden_R0031 | - | 15 Leu tRNA
|

940458 | 940532 | + | 75 | 91791369 | Sden_R0032 | - | 05 Gln tRNA
|

1144177 | 1144263 | + | 87 | 91791369 | Sden_R0033 | - | 15 Leu tRNA
|

1144345 | 1144421 | + | 77 | 91791369 | Sden_R0034 | - | 16 Met tRNA
|

1150815 | 1150928 | + | 114 | 91791369 | Sden_R0035 | - | |

1415392 | 1415483 | + | 92 | 91791369 | Sden_R0036 | - | 08 Ser tRNA
|

1415506 | 1415582 | + | 77 | 91791369 | Sden_R0037 | - | 11 Arg tRNA
|

1415608 | 1415684 | + | 77 | 91791369 | Sden_R0038 | - | 11 Arg tRNA
|

1415750 | 1415826 | + | 77 | 91791369 | Sden_R0039 | - | 11 Arg tRNA
|

1415835 | 1415926 | + | 92 | 91791369 | Sden_R0040 | - | 08 Ser tRNA
|

1416008 | 1416084 | + | 77 | 91791369 | Sden_R0041 | - | 11 Arg tRNA
|

1447676 | 1448027 | - | 352 | 91791369 | Sden_R0042 | - | tmRNA |

1516326 | 1516402 | - | 77 | 91791369 | Sden_R0043 | - | 11 Arg tRNA
|

1607157 | 1608689 | + | 1533 | 91791369 | Sden_R0044 | - | 16S ribosomal RNA |

1608907 | 1608983 | + | 77 | 91791369 | Sden_R0045 | - | 14 Ile tRNA
|

1609121 | 1609196 | + | 76 | 91791369 | Sden_R0046 | - | 02 Ala tRNA
|

1609695 | 1612599 | + | 2905 | 91791369 | Sden_R0047 | - | 23S ribosomal RNA |

1612853 | 1612968 | + | 116 | 91791369 | Sden_R0048 | - | 5S ribosomal RNA |

1627570 | 1627645 | + | 76 | 91791369 | Sden_R0049 | - | 10 Lys tRNA
|

1627811 | 1627886 | + | 76 | 91791369 | Sden_R0050 | - | 10 Lys tRNA
|

1628000 | 1628075 | + | 76 | 91791369 | Sden_R0051 | - | 10 Lys tRNA
|

1628397 | 1628472 | + | 76 | 91791369 | Sden_R0052 | - | 10 Lys tRNA
|

1628595 | 1628670 | + | 76 | 91791369 | Sden_R0053 | - | 10 Lys tRNA
|

1628839 | 1628914 | + | 76 | 91791369 | Sden_R0054 | - | 10 Lys tRNA
|

1677652 | 1677727 | + | 76 | 91791369 | Sden_R0055 | - | 01 Gly tRNA
|

1677746 | 1677819 | + | 74 | 91791369 | Sden_R0056 | - | 19 Cys tRNA
|

1677867 | 1677952 | + | 86 | 91791369 | Sden_R0057 | - | 15 Leu tRNA
|

1807834 | 1807983 | + | 150 | 91791369 | Sden_R0058 | - | |

1828239 | 1828329 | + | 91 | 91791369 | Sden_R0059 | - | 08 Ser tRNA
|

1920320 | 1920405 | + | 86 | 91791369 | Sden_R0060 | - | 15 Leu tRNA
|

2003405 | 2003481 | - | 77 | 91791369 | Sden_R0061 | - | 13 Val tRNA
|

2003853 | 2003929 | - | 77 | 91791369 | Sden_R0062 | - | 13 Val tRNA
|

2091848 | 2091948 | + | 101 | 91791369 | Sden_R0063 | - | |

2119907 | 2119982 | + | 76 | 91791369 | Sden_R0064 | - | 01 Gly tRNA
|

2120011 | 2120084 | + | 74 | 91791369 | Sden_R0065 | - | 19 Cys tRNA
|

2120132 | 2120217 | + | 86 | 91791369 | Sden_R0066 | - | 15 Leu tRNA
|

2136929 | 2137019 | + | 91 | 91791369 | Sden_R0067 | - | 08 Ser tRNA
|

2188666 | 2188741 | + | 76 | 91791369 | Sden_R0068 | - | 07 Asn tRNA
|

2188795 | 2188870 | + | 76 | 91791369 | Sden_R0069 | - | 07 Asn tRNA
|

2188927 | 2189002 | + | 76 | 91791369 | Sden_R0070 | - | 07 Asn tRNA
|

2189029 | 2189104 | + | 76 | 91791369 | Sden_R0071 | - | 07 Asn tRNA
|

2189160 | 2189235 | + | 76 | 91791369 | Sden_R0072 | - | 07 Asn tRNA
|

2243584 | 2243671 | - | 88 | 91791369 | Sden_R0073 | - | 08 Ser tRNA
|

2388865 | 2388949 | + | 85 | 91791369 | Sden_R0074 | - | 18 Tyr tRNA
|

2389041 | 2389125 | + | 85 | 91791369 | Sden_R0075 | - | 18 Tyr tRNA
|

2389202 | 2389286 | + | 85 | 91791369 | Sden_R0076 | - | 18 Tyr tRNA
|

2747485 | 2747594 | - | 110 | 91791369 | Sden_R0077 | - | |

2768128 | 2768204 | + | 77 | 91791369 | Sden_R0078 | - | 03 Pro tRNA
|

2821170 | 2821246 | + | 77 | 91791369 | Sden_R0079 | - | 16 Met tRNA
|

2821332 | 2821408 | + | 77 | 91791369 | Sden_R0080 | - | 16 Met tRNA
|

2821455 | 2821531 | + | 77 | 91791369 | Sden_R0081 | - | 16 Met tRNA
|

2821591 | 2821667 | + | 77 | 91791369 | Sden_R0082 | - | 16 Met tRNA
|

2898111 | 2898226 | - | 116 | 91791369 | Sden_R0083 | - | SRP RNA; RNA component of signal recognition particle |

2938035 | 2938125 | - | 91 | 91791369 | Sden_R0084 | - | 08 Ser tRNA
|

2977435 | 2977510 | - | 76 | 91791369 | Sden_R0085 | - | 09 His tRNA
|

2977520 | 2977596 | - | 77 | 91791369 | Sden_R0086 | - | 11 Arg tRNA
|

2977725 | 2977801 | - | 77 | 91791369 | Sden_R0087 | - | 03 Pro tRNA
|

3026243 | 3026318 | - | 76 | 91791369 | Sden_R0088 | - | 13 Val tRNA
|

3026359 | 3026434 | - | 76 | 91791369 | Sden_R0089 | - | 13 Val tRNA
|

3026471 | 3026546 | - | 76 | 91791369 | Sden_R0090 | - | 13 Val tRNA
|

3026588 | 3026663 | - | 76 | 91791369 | Sden_R0091 | - | 13 Val tRNA
|

3026695 | 3026770 | - | 76 | 91791369 | Sden_R0092 | - | 13 Val tRNA
|

3026812 | 3026887 | - | 76 | 91791369 | Sden_R0093 | - | 13 Val tRNA
|

3028742 | 3028817 | + | 76 | 91791369 | Sden_R0094 | - | 02 Ala tRNA
|

3029286 | 3029361 | + | 76 | 91791369 | Sden_R0095 | - | 04 Glu tRNA
|

3029400 | 3029475 | + | 76 | 91791369 | Sden_R0096 | - | 02 Ala tRNA
|

3029754 | 3029829 | + | 76 | 91791369 | Sden_R0097 | - | 04 Glu tRNA
|

3030150 | 3030225 | + | 76 | 91791369 | Sden_R0098 | - | 04 Glu tRNA
|

3030551 | 3030626 | + | 76 | 91791369 | Sden_R0099 | - | 04 Glu tRNA
|

3030947 | 3031022 | + | 76 | 91791369 | Sden_R0100 | - | 04 Glu tRNA
|

3031156 | 3031231 | + | 76 | 91791369 | Sden_R0101 | - | 04 Glu tRNA
|

3232507 | 3232582 | + | 76 | 91791369 | Sden_R0102 | - | 17 Phe tRNA
|

3232590 | 3232665 | + | 76 | 91791369 | Sden_R0103 | - | 12 Thr tRNA
|

3384708 | 3384784 | + | 77 | 91791369 | Sden_R0104 | - | 16 Met tRNA
|

3408371 | 3408486 | - | 116 | 91791369 | Sden_R0105 | - | 5S ribosomal RNA |

3408740 | 3411644 | - | 2905 | 91791369 | Sden_R0106 | - | 23S ribosomal RNA |

3412182 | 3413716 | - | 1535 | 91791369 | Sden_R0107 | - | 16S ribosomal RNA |

3421796 | 3421871 | + | 76 | 91791369 | Sden_R0108 | - | 17 Phe tRNA
|

3421925 | 3422011 | + | 87 | 91791369 | Sden_R0109 | - | 15 Leu tRNA
|

3649114 | 3649190 | - | 77 | 91791369 | Sden_R0110 | - | 20 Trp tRNA
|

3846313 | 3846388 | - | 76 | 91791369 | Sden_R0111 | - | 01 Gly tRNA
|

3846639 | 3846714 | - | 76 | 91791369 | Sden_R0112 | - | 01 Gly tRNA
|

3846958 | 3847033 | - | 76 | 91791369 | Sden_R0113 | - | 01 Gly tRNA
|

4119466 | 4119542 | - | 77 | 91791369 | Sden_R0114 | - | 06 Asp tRNA
|

4119632 | 4119747 | - | 116 | 91791369 | Sden_R0115 | - | 5S ribosomal RNA |

4119931 | 4122835 | - | 2905 | 91791369 | Sden_R0116 | - | 23S ribosomal RNA |

4123334 | 4123409 | - | 76 | 91791369 | Sden_R0117 | - | 02 Ala tRNA
|

4123547 | 4123623 | - | 77 | 91791369 | Sden_R0118 | - | 14 Ile tRNA
|

4123841 | 4125373 | - | 1533 | 91791369 | Sden_R0119 | - | 16S ribosomal RNA |

4273827 | 4273942 | - | 116 | 91791369 | Sden_R0120 | - | 5S ribosomal RNA |

4274152 | 4277056 | - | 2905 | 91791369 | Sden_R0121 | - | 23S ribosomal RNA |

4277593 | 4279127 | - | 1535 | 91791369 | Sden_R0122 | - | 16S ribosomal RNA |

4439245 | 4439335 | - | 91 | 91791369 | Sden_R0123 | - | 06 Asp tRNA
|

4439396 | 4439472 | - | 77 | 91791369 | Sden_R0124 | - | 06 Asp tRNA
|

4439562 | 4439677 | - | 116 | 91791369 | Sden_R0125 | - | 5S ribosomal RNA |

4439861 | 4442765 | - | 2905 | 91791369 | Sden_R0126 | - | 23S ribosomal RNA |

4443302 | 4444836 | - | 1535 | 91791369 | Sden_R0127 | - | 16S ribosomal RNA |