Материалы:NC 008530

LOCUS NC_008530 1894360 bp DNA circular BCT 31-OCT-2006 DEFINITION Lactobacillus gasseri ATCC 33323, complete genome. ACCESSION NC_008530 VERSION NC_008530.1 GI:116628683 KEYWORDS . SOURCE Lactobacillus gasseri ATCC 33323 ORGANISM Lactobacillus gasseri ATCC 33323 Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. REFERENCE 1 (bases 1 to 1894360) AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B., Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K., Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J., Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B., Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E., Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D., Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D., Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P., Kozyavkin,S., Weimer,B. and Mills,D. TITLE Comparative genomics of the lactic acid bacteria JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006) PUBMED 17030793 REFERENCE 2 (bases 1 to 1894360) AUTHORS . CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (24-OCT-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1894360) AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S., Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N., Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S., Makarova,K., Koonin,E., Mills,D.A. and Richardson,P. CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc. TITLE Direct Submission JOURNAL Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000413. URL -- http://www.jgi.doe.gov JGI Project ID: 2661979 Source DNA and bacteria available from Todd Klaenhammer (trk@unity.ncsu.edu) Bacteria also available from ATCC: ATCC 33323 Contacts: Todd Klaenhammer (trk@unity.ncsu.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Annotation done by Kira Makarova and Eugene Koonin Finishing done by Fidelity Systems Inc. (Gaithersburg) URL -- http://www.fidelitysystems.com Project Information available at: http://genome.jgi-psf.org/mic_home.html The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. (http://www.genome.gov/page.cfm?pageID=10506376). COMPLETENESS: full length.



## Расположение РНК

Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|

20396 | 20468 | + | 73 | 116628683 | LGAS_t0018 | - | 12 Thr tRNA
|

23614 | 23689 | + | 76 | 116628683 | LGAS_t0023 | - | 12 Thr tRNA
|

77784 | 77856 | - | 73 | 116628683 | LGAS_t0062 | - | 10 Lys tRNA
|

77982 | 78054 | - | 73 | 116628683 | LGAS_t0063 | - | 10 Lys tRNA
|

213530 | 213602 | + | 73 | 116628683 | LGAS_t0178 | - | 12 Thr tRNA
|

231930 | 232000 | - | 71 | 116628683 | LGAS_t0199 | - | 01 Gly tRNA
|

318480 | 318554 | + | 75 | 116628683 | LGAS_t0281 | - | 01 Gly tRNA
|

318595 | 318668 | + | 74 | 116628683 | LGAS_t0282 | - | 03 Pro tRNA
|

477570 | 479148 | + | 1579 | 116628683 | LGAS_r0449 | - | 16S ribosomal RNA |

479701 | 482332 | + | 2632 | 116628683 | LGAS_r0450 | - | 23S ribosomal RNA |

482332 | 482450 | + | 119 | 116628683 | LGAS_r0451 | - | 5S ribosomal RNA |

482463 | 482535 | + | 73 | 116628683 | LGAS_t0452 | - | 07 Asn tRNA
|

482558 | 482647 | + | 90 | 116628683 | LGAS_t0453 | - | 08 Ser tRNA
|

482764 | 482835 | + | 72 | 116628683 | LGAS_t0454 | - | 04 Glu tRNA
|

482859 | 482931 | + | 73 | 116628683 | LGAS_t0455 | - | 13 Val tRNA
|

600613 | 600685 | + | 73 | 116628683 | LGAS_t0571 | - | 11 Arg tRNA
|

613549 | 613621 | + | 73 | 116628683 | LGAS_t0598 | - | 05 Gln tRNA
|

614213 | 614294 | + | 82 | 116628683 | LGAS_t0600 | - | Xaa tRNA |

653635 | 653707 | + | 73 | 116628683 | LGAS_t0660 | - | 05 Gln tRNA
|

654299 | 654380 | + | 82 | 116628683 | LGAS_t0662 | - | Xaa tRNA |

701626 | 701699 | + | 74 | 116628683 | LGAS_t0718 | - | 11 Arg tRNA
|

823695 | 823782 | + | 88 | 116628683 | LGAS_t0836 | - | 08 Ser tRNA
|

1023919 | 1024248 | - | 330 | 116628683 | LGAS_r1021 | - | RNA_RNaseP_classB |

1250456 | 1250528 | - | 73 | 116628683 | LGAS_t1252 | - | 05 Gln tRNA
|

1250535 | 1250606 | - | 72 | 116628683 | LGAS_t1253 | - | 04 Glu tRNA
|

1264702 | 1265067 | - | 366 | 116628683 | LGAS_s1268 | - | tmRNA |

1301986 | 1302057 | + | 72 | 116628683 | LGAS_t1310 | - | Xaa tRNA |

1442710 | 1442793 | - | 84 | 116628683 | LGAS_t1454 | - | 15 Leu tRNA
|

1512369 | 1512457 | - | 89 | 116628683 | LGAS_t1519 | - | 15 Leu tRNA
|

1531077 | 1531148 | - | 72 | 116628683 | LGAS_t1538 | - | 05 Gln tRNA
|

1531203 | 1531284 | - | 82 | 116628683 | LGAS_t1539 | - | 18 Tyr tRNA
|

1535181 | 1535252 | - | 72 | 116628683 | LGAS_t1545 | - | 05 Gln tRNA
|

1540520 | 1540592 | - | 73 | 116628683 | LGAS_t1552 | - | 12 Thr tRNA
|

1555766 | 1555838 | - | 73 | 116628683 | LGAS_t1563 | - | 07 Asn tRNA
|

1555851 | 1555969 | - | 119 | 116628683 | LGAS_r1564 | - | 5S ribosomal RNA |

1555970 | 1558600 | - | 2631 | 116628683 | LGAS_r1565 | - | 23S ribosomal RNA |

1559153 | 1560731 | - | 1579 | 116628683 | LGAS_r1566 | - | 16S ribosomal RNA |

1561127 | 1561216 | - | 90 | 116628683 | LGAS_t1567 | - | 08 Ser tRNA
|

1561219 | 1561292 | - | 74 | 116628683 | LGAS_t1568 | - | 14 Ile tRNA
|

1561302 | 1561375 | - | 74 | 116628683 | LGAS_t1569 | - | 01 Gly tRNA
|

1561393 | 1561465 | - | 73 | 116628683 | LGAS_t1570 | - | 17 Phe tRNA
|

1561470 | 1561542 | - | 73 | 116628683 | LGAS_t1571 | - | 06 Asp tRNA
|

1561546 | 1561619 | - | 74 | 116628683 | LGAS_t1572 | - | 16 Met tRNA
|

1561651 | 1561724 | - | 74 | 116628683 | LGAS_t1573 | - | 16 Met tRNA
|

1561738 | 1561811 | - | 74 | 116628683 | LGAS_t1574 | - | 16 Met tRNA
|

1561840 | 1561913 | - | 74 | 116628683 | LGAS_t1575 | - | 03 Pro tRNA
|

1561919 | 1561992 | - | 74 | 116628683 | LGAS_t1576 | - | 11 Arg tRNA
|

1562002 | 1562087 | - | 86 | 116628683 | LGAS_t1577 | - | 15 Leu tRNA
|

1562100 | 1562171 | - | 72 | 116628683 | LGAS_t1578 | - | 01 Gly tRNA
|

1562191 | 1562263 | - | 73 | 116628683 | LGAS_t1579 | - | 12 Thr tRNA
|

1562265 | 1562349 | - | 85 | 116628683 | LGAS_t1580 | - | 15 Leu tRNA
|

1562369 | 1562441 | - | 73 | 116628683 | LGAS_t1581 | - | 10 Lys tRNA
|

1562444 | 1562516 | - | 73 | 116628683 | LGAS_t1582 | - | 13 Val tRNA
|

1562521 | 1562639 | - | 119 | 116628683 | LGAS_r1583 | - | 5S ribosomal RNA |

1562640 | 1565270 | - | 2631 | 116628683 | LGAS_r1584 | - | 23S ribosomal RNA |

1565823 | 1567401 | - | 1579 | 116628683 | LGAS_r1585 | - | 16S ribosomal RNA |

1573405 | 1573488 | - | 84 | 116628683 | LGAS_t1590 | - | 15 Leu tRNA
|

1573520 | 1573590 | - | 71 | 116628683 | LGAS_t1591 | - | 19 Cys tRNA
|

1573611 | 1573682 | - | 72 | 116628683 | LGAS_t1592 | - | 05 Gln tRNA
|

1573687 | 1573762 | - | 76 | 116628683 | LGAS_t1593 | - | 09 His tRNA
|

1573777 | 1573847 | - | 71 | 116628683 | LGAS_t1594 | - | 20 Trp tRNA
|

1573855 | 1573936 | - | 82 | 116628683 | LGAS_t1595 | - | 18 Tyr tRNA
|

1573941 | 1574013 | - | 73 | 116628683 | LGAS_t1596 | - | 17 Phe tRNA
|

1574018 | 1574090 | - | 73 | 116628683 | LGAS_t1597 | - | 06 Asp tRNA
|

1574094 | 1574167 | - | 74 | 116628683 | LGAS_t1598 | - | 16 Met tRNA
|

1574175 | 1574265 | - | 91 | 116628683 | LGAS_t1599 | - | 08 Ser tRNA
|

1574291 | 1574362 | - | 72 | 116628683 | LGAS_t1600 | - | 04 Glu tRNA
|

1575301 | 1575390 | - | 90 | 116628683 | LGAS_t1602 | - | 08 Ser tRNA
|

1575393 | 1575466 | - | 74 | 116628683 | LGAS_t1603 | - | 14 Ile tRNA
|

1575476 | 1575549 | - | 74 | 116628683 | LGAS_t1604 | - | 01 Gly tRNA
|

1575567 | 1575639 | - | 73 | 116628683 | LGAS_t1605 | - | 17 Phe tRNA
|

1575644 | 1575716 | - | 73 | 116628683 | LGAS_t1606 | - | 06 Asp tRNA
|

1575720 | 1575793 | - | 74 | 116628683 | LGAS_t1607 | - | 16 Met tRNA
|

1575825 | 1575898 | - | 74 | 116628683 | LGAS_t1608 | - | 16 Met tRNA
|

1575912 | 1575985 | - | 74 | 116628683 | LGAS_t1609 | - | 16 Met tRNA
|

1576014 | 1576087 | - | 74 | 116628683 | LGAS_t1610 | - | 03 Pro tRNA
|

1576093 | 1576166 | - | 74 | 116628683 | LGAS_t1611 | - | 11 Arg tRNA
|

1576176 | 1576261 | - | 86 | 116628683 | LGAS_t1612 | - | 15 Leu tRNA
|

1576274 | 1576345 | - | 72 | 116628683 | LGAS_t1613 | - | 01 Gly tRNA
|

1576365 | 1576437 | - | 73 | 116628683 | LGAS_t1614 | - | 12 Thr tRNA
|

1576439 | 1576523 | - | 85 | 116628683 | LGAS_t1615 | - | 15 Leu tRNA
|

1576543 | 1576615 | - | 73 | 116628683 | LGAS_t1616 | - | 10 Lys tRNA
|

1576618 | 1576690 | - | 73 | 116628683 | LGAS_t1617 | - | 13 Val tRNA
|

1576695 | 1576813 | - | 119 | 116628683 | LGAS_r1618 | - | 5S ribosomal RNA |

1576814 | 1579444 | - | 2631 | 116628683 | LGAS_r1619 | - | 23S ribosomal RNA |

1579997 | 1581575 | - | 1579 | 116628683 | LGAS_r1620 | - | 16S ribosomal RNA |

1783066 | 1783138 | - | 73 | 116628683 | LGAS_t1796 | - | 07 Asn tRNA
|

1783151 | 1783269 | - | 119 | 116628683 | LGAS_r1797 | - | 5S ribosomal RNA |

1783270 | 1785900 | - | 2631 | 116628683 | LGAS_r1798 | - | 23S ribosomal RNA |

1786359 | 1786431 | - | 73 | 116628683 | LGAS_t1799 | - | 02 Ala tRNA
|

1786465 | 1786538 | - | 74 | 116628683 | LGAS_t1800 | - | 14 Ile tRNA
|

1786679 | 1788257 | - | 1579 | 116628683 | LGAS_r1801 | - | 16S ribosomal RNA |

1788578 | 1788653 | - | 76 | 116628683 | LGAS_t1802 | - | 07 Asn tRNA
|

1788666 | 1788784 | - | 119 | 116628683 | LGAS_r1803 | - | 5S ribosomal RNA |

1788785 | 1791415 | - | 2631 | 116628683 | LGAS_r1804 | - | 23S ribosomal RNA |

1791874 | 1791946 | - | 73 | 116628683 | LGAS_t1805 | - | 02 Ala tRNA
|

1791980 | 1792053 | - | 74 | 116628683 | LGAS_t1806 | - | 14 Ile tRNA
|

1792194 | 1793772 | - | 1579 | 116628683 | LGAS_r1807 | - | 16S ribosomal RNA |