Language: C++

Last login: Fri Sep 21 08:45:55 on console
keiyakanekonoMac-mini:~ keiya11$ ssh -l keiya slogin.hgc.jp
Enter passphrase for key '/Users/keiya11/.ssh/id_rsa': 
Last login: Tue Sep 18 15:36:33 2018 from 157.82.243.52

[First do QLOGIN!]
Welcome to SHIROKANE supercomputer of Human Genome Center, IMS, UT.
This is an slogin node as the gateway with a very small software.
Begin first by TYPING "qlogin" COMMAND then you can use all the features of SHIROKANE.
     |             o                  ,,
,---.|   ,---.,---..,---. |  ---. / +--  -+-   .
|   ||   |   ||   |||   | |    / /  |-- | ` |  |
`---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
    |         `---' https://supcom.hgc.jp/internal/mediawiki/id/357
[A login node of SHIROKANE keiya@slogin2:~]$ qlogin
Your job 45343348 ("QLOGIN") has been submitted
waiting for interactive job to be scheduled ...
Your interactive job 45343348 has been successfully scheduled.
Establishing /home/geadmin/N1GE/utilbin/lx-amd64/qlogin_wrapper session to host sc113i ...
[keiya@sc113 ~]$ ls
backup  data  hello.sh.e45253942  hello.sh.o45253942  resources  workspace
[keiya@sc113 ~]$ cd data
[keiya@sc113 data]$ ls
bacteria_open
[keiya@sc113 data]$ cd ..
[keiya@sc113 ~]$ cd workspace/
[keiya@sc113 workspace]$ ls
data_kunigo  hello  hello_python  kunigo_pptx.tar.gz
[keiya@sc113 workspace]$ mkdir data_pathogen_detect
[keiya@sc113 workspace]$ cd data_pathogen_detect/
[keiya@sc113 data_pathogen_detect]$ mkdir SA_HI_16Samplicon_minion_0912_data
[keiya@sc113 data_pathogen_detect]$ cd SA_HI_16Samplicon_minion_0912_data/
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/sequencing_summary.txt ./
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ ls
sequencing_summary.txt
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq
cp: missing destination file operand after `/yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq'
詳しくは `cp --help' を実行して下さい.
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq
cp: missing destination file operand after `/yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq'
詳しくは `cp --help' を実行して下さい.
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq ./
cp: cannot stat `yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq': そのようなファイルやディレクトリはありません
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ ls yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7
ls: cannot access yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7: そのようなファイルやディレクトリはありません
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/sequencing_1dsq_summary.txt ./
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1dsq_pass.fq ./
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1dsq_fail.fq ./
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ ls
1dsq_fail.fq  1dsq_pass.fq  sequencing_1dsq_summary.txt  sequencing_summary.txt
[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ vim sequencing_1dsq_summary.txt 
























[keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cd ..
[keiya@sc113 data_pathogen_detect]$ ls
SA_HI_16Samplicon_minion_0912_data
[keiya@sc113 data_pathogen_detect]$ pwd
/home/keiya/workspace/data_pathogen_detect
[keiya@sc113 data_pathogen_detect]$ cd ..
[keiya@sc113 workspace]$ vim count_read.py
[keiya@sc113 workspace]$ ls
data_kunigo  data_pathogen_detect  hello  hello_python  kunigo_pptx.tar.gz
[keiya@sc113 workspace]$ mkdir script
[keiya@sc113 workspace]$ ls
data_kunigo           hello         kunigo_pptx.tar.gz
data_pathogen_detect  hello_python  script
[keiya@sc113 workspace]$ cdv data_pathogen_detect/SA_HI_16Samplicon_minion_0912_data/
1dsq_fail.fq                 sequencing_1dsq_summary.txt
1dsq_pass.fq                 sequencing_summary.txt
[keiya@sc113 workspace]$ head data_pathogen_detect/SA_HI_16Samplicon_minion_0912_data/1dsq_pass.fq 
@b8776b2d-6fb8-4444-bafd-7993a3ee93464ed89aaf-afd0-4023-903c-5db387f67762 runid=d10c1abbbfbcc5fbc53585945d5ab8271efe8de0 read=111 ch=9 start_time=2018-09-13T08:14:47Z
ACAAACTCTCGTGGTGTGACGGGCGGTGTGTACAAGACCGGGAACGTATTCACCGTAGCATGCTGATCTACGATTACTAGCGATTCCAGCTTCATGTAGTCGAGTTGCAGACTACAATCCGAACTGAGAACAACTTTATGGGATTTGCTTGACCTCGCGGTTTCGCTGCCCTTTGTATTGTCCATTGTAGCACGTGTGTAGCCCAAATCATAAGGGCATGATGATTTGACGTCATCCCCACCTTCCTCCGGTTTGTCACCGGCAGTCAACTTAGAGTGCCCAACTTAATGATGGCAACTAAGCAGGGTTGCGCTCGTTGTGGGACTTAAAACCCAACATCTCATCACAACACGAGCTGACGACAACCATGCACCACCTGTCACTTTGTCCCCGAAGGAAGGCTCTATCTCTAGAGTTGTCAAAGGATGTCAAGATTTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCATGCTCCACCGCTTGTGCGGTCCCCGTCAATTCCTTTGAGTTTCAACCTTGCTGTCGTACTCCCCTTGTGGCGGAGTGCTTAATGCGTTAGCTGCAGCACTAAGGGGCGGAAACCCCTAACACTTAGCACTCATCGTTTACGGCGTGGACTACCAGGGTATCTAATCCTGTTTGATCCCCACGCTTTCGCACATCAGCGTCAGTTACAGACCAGAAAGTCGCCTTCGCCACTGGTGACATCATATCTCTGCGCGCATTTCACCGCTACACATGGAATTCCACTTTCCTCTTCTCAAGTTTTCCGGTTTCAATGACCTCCACGGTTGAGCCGTGGGCTTTCACATCAGACTTAAAAAACCGCCTACGCGCGCTTTTTTTTTTTTTTTTTTTACGCCCAATAATTCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTTCTGATTAGGTACCGTCAAGATGTGCACAGTTACTTACACATATGTTCTTCCCCTAATAACAGAGTTTACGATCCTAAGACCTTCATCACTCACGCGGCGTTGCTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCCTACTGCTGCCTCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGATCACCTCTCAGGTCGGCTATGCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGCAGCGGATCCATCTATAAGTGACAGCAAGAGACCGTCTTTCACTTTTGAACCATGCGGTTCAAAATATTATCCGGTATTATCCAGTATTAGCTCCGGTTTCCGAAGTTATCCCAGTCTTATAGGTAGGTTATCCACGTGTTACTCACCCGTCCGCCGCTAACATCAGAGAAGCAAGCTTCTCGTCCGTTCGCTCGACTTGCATGTATTAGGCACGCCGCCAGCGTTCATCGGTTATAATCAAGTCCTTGGTGTACAACCTCTGAGCCAGGATC
+
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m:>60.-+///%'&%'%+&+,/(,/2+..30F)(*+/*;/9@?.4?012.--.-,>;;98343:B/--2*2++*/-)*)84/+*)*)/++C?9A-<1(,557<5G764C@,4353154B2+)'*64/4?679@4C99</.@>99-<9>;;4.:63-7656767788--,--9<<4-*04/6/5-<,.2=::?@.,+,+2204*+,0/-,,251021/I?D;=<463'0B?7/602-28,3)))/51,+DCDAA@A>;@*,**,38+2--+-/*6)*,,&*,004?;3/:--3)4.)**))->.923<:4<<@/(*78B?3(401B>88?1-20)330/173/0-3=:744.6>++''+(--**-)2-*&&&&?@>:@?C3680//0).734;39EA'.3-+&'0076>%*-@3J53557<5,%/.:0:9;39390/&.,./,35.1:94:A:,+*(*+-8*.)*+5+*0*)8?50522.'305A24/66>0;02'123364160*218A=ECD:?::84;100=>A6757/(**1434813;792248>(A,<>9=83>9BAA02-5556:.)9=:10,,21,/30-.74.32,+&;;=<0840:**166@6<;32*659?=7=&<58?AE,B-,,+6:7654-'%+/3./4?G:,:2&11.:23649<99:;::0?60044784=..-+0.412*310/21/6=76744<-.4405475152:@8AC=:654-*..,.4-&-)/'51&&'$%0(.*'30++*-497:96&-/.-'
@39b180c3-8109-4ef7-b04a-85fdfa610d7cd7835702-0ea5-4630-bb97-f8b583976228 runid=d10c1abbbfbcc5fbc53585945d5ab8271efe8de0 read=10 ch=11 start_time=2018-09-13T08:13:24Z
TTTTTTTTATAGCATTACAGTTATAGTTATTACGGTTGGCGTCTGCTTTGCAGCAACCGGAGAGGTTCCAAGTCAGAGGTTCCTTCATTCCTCCACATCTCTACGCATTTCACCGCCACACGTGAATTCTACCCTCCTTTAAAGTACTCTAGTTACCCAGTCTGAAATGCAATTCCCAGGTTAAGCCCGGGGCTTTCACACCTCACTTAAATAACCGCCTGCGTGCCCTTTACCCAGTTTTATTCCGATTAACGCTCACACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGTATTTAACGTCAATTTGATGTACTATTAACACATCAACCTTCCTCAATACCGAAAGAACTTTACAACCCGAAGGCCTTCTTCATTCACGCGGCATGGCTGCGTCAGGTTCCCCCATTGCGCAATATTCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGAGATTGCAGGCTTGGTGAGAGCCTTTACCCCACCAACTACCTGGCGTCGCGTTTACGGCTCATCCTTATGGCGGGTGGCTAAAGTCCCACCCTTTCGTCTCTCGACACTACGCGGTATTAGCGACAGTTTCCCGTCGTTATCCCCCTCCATAAGCCAGATTCCCAAGCATTACTTCACCCGTCTGCCACTCGTCAGCAAAGCAAGCTTCCTCCTGCTACCGTTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCAATGAGTCCAAGACCTCGCCTGGCTGAGCCAGGATCAAATCATAGAACTCTAGGAACTAACCTCTCTGACTTAAAGC
+
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
@2e8acb60-306d-4cf8-913a-2de1a08532304ad72440-15a8-4248-afab-f067502bd7ad runid=d10c1abbbfbcc5fbc53585945d5ab8271efe8de0 read=97 ch=16 start_time=2018-09-13T08:15:00Z
TTGGCTTTGTCTGCTTAAAGTTCAAACCGAGAGGTTCCAAGTCGAGAGGTTCCAGAGCTTGATCTGGCTCAGCGCTGTTTCTGGGAGCTTGGACTCATTGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAACGGTAGCAGGAGGAAGCTTGCTTTCTTGCTGACGAGTGGCGGACGGGTGAGTAATGCTTGGGAATCTGGCTTATGGAGGATAACGACGGGAAACTGTCGCTAATACCGCGTAGTGTCGAGAGACGAAAGGGTGGGACTTTAGCCACCTGCCATAGGATGAGCCCAAGTGGGATTAGGTAGTTGGTAAGTAAAGGCTCAAGCCTGCGATCTCTAGCTGGTCTGAGAGACGACCAGCCACACTGGAACCGAGACTAGACACGGTCCAAGACTCACGGGAGGCAGCAGTGGGAATATTGCGCAATGGGGAACCCCAACGCAGCCATGCCGCGTGAATGAAGAAGGCCTTCGGGTTGTAAAGTTCTTTCGGTATTGATGAAGGTTGATGTGTTAATAGTACATCAAATTGACGTTAAATACAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCGAGCGTTAATCGGAATAACTGGGCGTAAAGAAGGCACGCAGGCGGTTATTTAAGTGAGGTGTGAAAGCTGGCGGGCTTAACCTGGGAATTGCATTTCAGACTGGGTAACTAGAGTACTTTAGGGAGGGTGGGAGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTGGAGGAATACCGAAGGCGAAGGCAAGCCCTTAGAATGTACTGACGCTCATGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCTGTAAACGCTGTCGATTTGGGGTTGGGGTTTAACTCTGGCGCCCGTAGCTAACGTGATAATCGACCGCCTGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGCCCACACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTTGACATCCTAAGAAGTTTGCAGAGATGCGAATGCCTTCGGGAACTTAGAGACAGGTGCTGCATGCTGTCGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATCCTTTGTTGCCAGCGATACGGTCGGGAACTCAAAGGAGACTGCCAGTTATAAAACTGGAGGAAGGTGGGGATGACATCCGTCATCATGGCCCTTACGAGTAGGGCTACACACGTGCTACAATGGCGTATACAGGGAAGCGAAGCTGTGAGGTGGAGCGAATCTCATAAAGTACGTCTAAGTCCGGTTGGAGTCTGCAACTCGACTCATGAAGTCGGAATCGCTAGTAATCGCGAATCAGAATGTCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTTGTACCAGAAGTAGATAGCTTAACCTTTAGGAGGGCGTTTACCACGGTATGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGAACCTCTGACTTGGGCCTCGGAACCCCGGTTTGCTTTTAAGCAGACGCCAGCAATACGTAACTGAACGAAGCACA
[keiya@sc113 workspace]$ ls
data_kunigo           hello         kunigo_pptx.tar.gz
data_pathogen_detect  hello_python  script
[keiya@sc113 workspace]$ cd script/
[keiya@sc113 script]$ vim primer_count.py
[keiya@sc113 script]$ packet_write_wait: Connection to 202.175.151.55 port 22: Broken pipe
keiyakanekonoMac-mini:~ keiya11$ ssh -l keiya slogin.hgc.jp
Enter passphrase for key '/Users/keiya11/.ssh/id_rsa': 
Last login: Fri Sep 21 11:05:57 2018 from 157.82.243.52

[First do QLOGIN!]
Welcome to SHIROKANE supercomputer of Human Genome Center, IMS, UT.
This is an slogin node as the gateway with a very small software.
Begin first by TYPING "qlogin" COMMAND then you can use all the features of SHIROKANE.
     |             o                  ,,
,---.|   ,---.,---..,---. |  ---. / +--  -+-   .
|   ||   |   ||   |||   | |    / /  |-- | ` |  |
`---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
    |         `---' https://supcom.hgc.jp/internal/mediawiki/id/357
qlo[A login node of SHIROKANE keiya@slogin2:~]$ qlogin
Your job 45344543 ("QLOGIN") has been submitted
waiting for interactive job to be scheduled ...
Your interactive job 45344543 has been successfully scheduled.
Establishing /home/geadmin/N1GE/utilbin/lx-amd64/qlogin_wrapper session to host sc113i ...
Last login: Fri Sep 21 11:06:01 2018 from yc132i
[keiya@sc113 ~]$ cd workspace/script/
[keiya@sc113 script]$ ls
primer_count.py
[keiya@sc113 script]$ bim primer_count.py 
bash: bim: コマンドが見つかりません
いくつかのコマンドは環境変数 PATH に記述のない /usr/local/package/ にあります。
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
  File "primer_count.py", line 28
SyntaxError: Non-ASCII character '\xe3' in file primer_count.py on line 29, but no encoding declared; see http://python.org/dev/peps/pep-0263/ for details
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ vim primer_count_python.sh
[keiya@sc113 script]$ qsub -cwd primer_count
Unable to read script file because of error: error opening primer_count: No such file or directory
[keiya@sc113 script]$ qsub -cwd primer_count_python.sh 
Your job 45344779 ("primer_count_python.sh") has been submitted
[keiya@sc113 script]$ pythn
bash: pythn: コマンドが見つかりません
いくつかのコマンドは環境変数 PATH に記述のない /usr/local/package/ にあります。
[keiya@sc113 script]$ python
Python 2.7.14 (default, Feb 14 2018, 11:26:16) 
[GCC 4.9.3] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> quit()
[keiya@sc113 script]$ python primer_count.py 
  File "primer_count.py", line 28
SyntaxError: Non-ASCII character '\xe3' in file primer_count.py on line 29, but no encoding declared; see http://python.org/dev/peps/pep-0263/ for details
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
Traceback (most recent call last):
  File "primer_count.py", line 21, in <module>
    primer_seq = [seq_SA025,seq_SA050,seq_SA075,seq_SA1,seq_SA2,seq_SA4,seq_SA,seq_HI025,seq_HI050,seq_HI075,seq_HI1,seq_HI2,seq_HI4,seq_HI8]
NameError: name 'seq_SA' is not defined
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
CCGCGGTTGATGAACGCTGGCGGCGTGCCTA,TTATAACCGATGAACGCTGGCGGCGTGCCTA,GGACTTGGGATGAACGCTGGCGGCGTGCCTA,AAGTCCAAGATGAACGCTGGCGGCGTGCCTA,ATCCACTGGATGAACGCTGGCGGCGTGCCTA,GCTTGTCAGATGAACGCTGGCGGCGTGCCTA,CAAGCTAGGATGAACGCTGGCGGCGTGCCTA,TGGATCGAATTGAACGCTGGCGGCAGGCTT,AGTTCAGGATTGAACGCTGGCGGCAGGCTT,GACCTGAAATTGAACGCTGGCGGCAGGCTT,TCTCTACTATTGAACGCTGGCGGCAGGCTT,CTCTCGTCATTGAACGCTGGCGGCAGGCTT,CCAAGTCTATTGAACGCTGGCGGCAGGCTT,TTGGACTCATTGAACGCTGGCGGCAGGCTT
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
  File "primer_count.py", line 35
    
    ^
SyntaxError: EOF while scanning triple-quoted string literal
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
CCGCGGTTGATGAACGCTGGCGGCGTGCCTA,TTATAACCGATGAACGCTGGCGGCGTGCCTA,GGACTTGGGATGAACGCTGGCGGCGTGCCTA,AAGTCCAAGATGAACGCTGGCGGCGTGCCTA,ATCCACTGGATGAACGCTGGCGGCGTGCCTA,GCTTGTCAGATGAACGCTGGCGGCGTGCCTA,CAAGCTAGGATGAACGCTGGCGGCGTGCCTA,TGGATCGAATTGAACGCTGGCGGCAGGCTT,AGTTCAGGATTGAACGCTGGCGGCAGGCTT,GACCTGAAATTGAACGCTGGCGGCAGGCTT,TCTCTACTATTGAACGCTGGCGGCAGGCTT,CTCTCGTCATTGAACGCTGGCGGCAGGCTT,CCAAGTCTATTGAACGCTGGCGGCAGGCTT,TTGGACTCATTGAACGCTGGCGGCAGGCTT
(0, 416)
(1, 6562)
(2, 7700)
(3, 5225)
(4, 762)
(5, 409)
(6, 1969)
(7, 156)
(8, 474)
(9, 1014)
(10, 863)
(11, 2389)
(12, 3881)
(13, 17749)
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
CCGCGGTTGATGAACGCTGGCGGCGTGCCTA,TTATAACCGATGAACGCTGGCGGCGTGCCTA,GGACTTGGGATGAACGCTGGCGGCGTGCCTA,AAGTCCAAGATGAACGCTGGCGGCGTGCCTA,ATCCACTGGATGAACGCTGGCGGCGTGCCTA,GCTTGTCAGATGAACGCTGGCGGCGTGCCTA,CAAGCTAGGATGAACGCTGGCGGCGTGCCTA,TGGATCGAATTGAACGCTGGCGGCAGGCTT,AGTTCAGGATTGAACGCTGGCGGCAGGCTT,GACCTGAAATTGAACGCTGGCGGCAGGCTT,TCTCTACTATTGAACGCTGGCGGCAGGCTT,CTCTCGTCATTGAACGCTGGCGGCAGGCTT,CCAAGTCTATTGAACGCTGGCGGCAGGCTT,TTGGACTCATTGAACGCTGGCGGCAGGCTT
(1, 416)
Traceback (most recent call last):
  File "primer_count.py", line 33, in <module>
    f1.write(i+1,txt.count(seq))
TypeError: function takes exactly 1 argument (2 given)
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
  File "primer_count.py", line 33
    f1.write(txt.count(seq) + '\n'))
                                   ^
SyntaxError: invalid syntax
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
CCGCGGTTGATGAACGCTGGCGGCGTGCCTA,TTATAACCGATGAACGCTGGCGGCGTGCCTA,GGACTTGGGATGAACGCTGGCGGCGTGCCTA,AAGTCCAAGATGAACGCTGGCGGCGTGCCTA,ATCCACTGGATGAACGCTGGCGGCGTGCCTA,GCTTGTCAGATGAACGCTGGCGGCGTGCCTA,CAAGCTAGGATGAACGCTGGCGGCGTGCCTA,TGGATCGAATTGAACGCTGGCGGCAGGCTT,AGTTCAGGATTGAACGCTGGCGGCAGGCTT,GACCTGAAATTGAACGCTGGCGGCAGGCTT,TCTCTACTATTGAACGCTGGCGGCAGGCTT,CTCTCGTCATTGAACGCTGGCGGCAGGCTT,CCAAGTCTATTGAACGCTGGCGGCAGGCTT,TTGGACTCATTGAACGCTGGCGGCAGGCTT
(1, 416)
Traceback (most recent call last):
  File "primer_count.py", line 33, in <module>
    f1.write(txt.count(seq) + '\n')
TypeError: unsupported operand type(s) for +: 'int' and 'str'
[keiya@sc113 script]$ python primer_count.py 
CCGCGGTTGATGAACGCTGGCGGCGTGCCTA,TTATAACCGATGAACGCTGGCGGCGTGCCTA,GGACTTGGGATGAACGCTGGCGGCGTGCCTA,AAGTCCAAGATGAACGCTGGCGGCGTGCCTA,ATCCACTGGATGAACGCTGGCGGCGTGCCTA,GCTTGTCAGATGAACGCTGGCGGCGTGCCTA,CAAGCTAGGATGAACGCTGGCGGCGTGCCTA,TGGATCGAATTGAACGCTGGCGGCAGGCTT,AGTTCAGGATTGAACGCTGGCGGCAGGCTT,GACCTGAAATTGAACGCTGGCGGCAGGCTT,TCTCTACTATTGAACGCTGGCGGCAGGCTT,CTCTCGTCATTGAACGCTGGCGGCAGGCTT,CCAAGTCTATTGAACGCTGGCGGCAGGCTT,TTGGACTCATTGAACGCTGGCGGCAGGCTT
(1, 416)
Traceback (most recent call last):
  File "primer_count.py", line 33, in <module>
    f1.write(txt.count(seq) + '\n')
TypeError: unsupported operand type(s) for +: 'int' and 'str'
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
CCGCGGTTGATGAACGCTGGCGGCGTGCCTA,TTATAACCGATGAACGCTGGCGGCGTGCCTA,GGACTTGGGATGAACGCTGGCGGCGTGCCTA,AAGTCCAAGATGAACGCTGGCGGCGTGCCTA,ATCCACTGGATGAACGCTGGCGGCGTGCCTA,GCTTGTCAGATGAACGCTGGCGGCGTGCCTA,CAAGCTAGGATGAACGCTGGCGGCGTGCCTA,TGGATCGAATTGAACGCTGGCGGCAGGCTT,AGTTCAGGATTGAACGCTGGCGGCAGGCTT,GACCTGAAATTGAACGCTGGCGGCAGGCTT,TCTCTACTATTGAACGCTGGCGGCAGGCTT,CTCTCGTCATTGAACGCTGGCGGCAGGCTT,CCAAGTCTATTGAACGCTGGCGGCAGGCTT,TTGGACTCATTGAACGCTGGCGGCAGGCTT
(1, 416)
Traceback (most recent call last):
  File "primer_count.py", line 33, in <module>
    f1.write(str(xt.count(seq)) + '\n')
NameError: name 'xt' is not defined
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
CCGCGGTTGATGAACGCTGGCGGCGTGCCTA,TTATAACCGATGAACGCTGGCGGCGTGCCTA,GGACTTGGGATGAACGCTGGCGGCGTGCCTA,AAGTCCAAGATGAACGCTGGCGGCGTGCCTA,ATCCACTGGATGAACGCTGGCGGCGTGCCTA,GCTTGTCAGATGAACGCTGGCGGCGTGCCTA,CAAGCTAGGATGAACGCTGGCGGCGTGCCTA,TGGATCGAATTGAACGCTGGCGGCAGGCTT,AGTTCAGGATTGAACGCTGGCGGCAGGCTT,GACCTGAAATTGAACGCTGGCGGCAGGCTT,TCTCTACTATTGAACGCTGGCGGCAGGCTT,CTCTCGTCATTGAACGCTGGCGGCAGGCTT,CCAAGTCTATTGAACGCTGGCGGCAGGCTT,TTGGACTCATTGAACGCTGGCGGCAGGCTT
(1, 416)
(2, 6562)
(3, 7700)
(4, 5225)
(5, 762)
(6, 409)
(7, 1969)
(8, 156)
(9, 474)
(10, 1014)
(11, 863)
(12, 2389)
(13, 3881)
(14, 17749)
[keiya@sc113 script]$ ls
primer_count.py         primer_count_python.sh.e45344779
primer_count.txt        primer_count_python.sh.o45344779
primer_count_python.sh
[keiya@sc113 script]$ cat primer_count.txt 
416
6562
7700
5225
762
409
1969
156
474
1014
863
2389
3881
17749
[keiya@sc113 script]$ vim primer_count.py 
[keiya@sc113 script]$ python primer_count.py 
CCGCGGTTGATGAACGCTGGCGGCGTGCCTA,TTATAACCGATGAACGCTGGCGGCGTGCCTA,GGACTTGGGATGAACGCTGGCGGCGTGCCTA,AAGTCCAAGATGAACGCTGGCGGCGTGCCTA,ATCCACTGGATGAACGCTGGCGGCGTGCCTA,GCTTGTCAGATGAACGCTGGCGGCGTGCCTA,CAAGCTAGGATGAACGCTGGCGGCGTGCCTA,TGGATCGAATTGAACGCTGGCGGCAGGCTT,AGTTCAGGATTGAACGCTGGCGGCAGGCTT,GACCTGAAATTGAACGCTGGCGGCAGGCTT,TCTCTACTATTGAACGCTGGCGGCAGGCTT,CTCTCGTCATTGAACGCTGGCGGCAGGCTT,CCAAGTCTATTGAACGCTGGCGGCAGGCTT,TTGGACTCATTGAACGCTGGCGGCAGGCTT
Traceback (most recent call last):
  File "primer_count.py", line 32, in <module>
    print(seq + ',' + txt.count(seq))
TypeError: cannot concatenate 'str' and 'int' objects
[keiya@sc113 script]$ vim get_line.py
[keiya@sc113 script]$ python get_line.py 
  File "get_line.py", line 4
    with open('../data_pathogen_detect/SA_HI_16Samplicon_minion_0912_data/1dsq_pass.fq') as f
                                                                                            ^
SyntaxError: invalid syntax
[keiya@sc113 script]$ vim get_line.py
[keiya@sc113 script]$ python get_line.py 
1411268
[keiya@sc113 script]$ vim get_line.py
[keiya@sc113 script]$ packet_write_wait: Connection to 202.175.151.55 port 22: Broken pipe
keiyakanekonoMac-mini:~ keiya11$ 
keiyakanekonoMac-mini:~ keiya11$ ssh -l keiya slogin.hgc.jp
Enter passphrase for key '/Users/keiya11/.ssh/id_rsa': 
Last login: Fri Sep 21 12:52:28 2018 from 157.82.243.52

[First do QLOGIN!]
Welcome to SHIROKANE supercomputer of Human Genome Center, IMS, UT.
This is an slogin node as the gateway with a very small software.
Begin first by TYPING "qlogin" COMMAND then you can use all the features of SHIROKANE.
     |             o                  ,,
,---.|   ,---.,---..,---. |  ---. / +--  -+-   .
|   ||   |   ||   |||   | |    / /  |-- | ` |  |
`---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
    |         `---' https://supcom.hgc.jp/internal/mediawiki/id/357
[A login node of SHIROKANE keiya@slogin2:~]$ qlogin
Your job 45347086 ("QLOGIN") has been submitted
waiting for interactive job to be scheduled ...
Your interactive job 45347086 has been successfully scheduled.
Establishing /home/geadmin/N1GE/utilbin/lx-amd64/qlogin_wrapper session to host sc097i ...
Last login: Sat Sep 15 18:12:12 2018 from yc001i
w                                                                              resize: unknown character, exiting.
[keiya@sc097 ~]$ which python
/usr/local/bin/python
[keiya@sc097 ~]$ python
Python 2.7.14 (default, Feb 14 2018, 11:26:16) 
[GCC 4.9.3] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> quit()
[keiya@sc097 ~]$ module avail python/3.4

------------------------------- /etc/modulefiles -------------------------------
python/3.4   python/3.4.3
[keiya@sc097 ~]$ module avail python

------------------------------- /etc/modulefiles -------------------------------
python/2.7             python/3.4             python/3.6.4
python/2.7.10          python/3.4.3
python/2.7.14(default) python/3.6
[keiya@sc097 ~]$ module avail python/3.6

------------------------------- /etc/modulefiles -------------------------------
python/3.6   python/3.6.4
[keiya@sc097 ~]$ module load python/3.6
[keiya@sc097 ~]$ python -version
Unknown option: -e
usage: python [option] ... [-c cmd | -m mod | file | -] [arg] ...
Try `python -h' for more information.
[keiya@sc097 ~]$ python
Python 3.6.4 (default, Mar 14 2018, 13:09:41) 
[GCC 4.9.3] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> quit()
[keiya@sc097 ~]$ wheels
bash: wheels: コマンドが見つかりません
いくつかのコマンドは環境変数 PATH に記述のない /usr/local/package/ にあります。
[keiya@sc097 ~]$ wheel
usage: wheel [-h]
             {keygen,sign,unsign,verify,unpack,install,install-scripts,convert,version,help}
             ...

positional arguments:
  {keygen,sign,unsign,verify,unpack,install,install-scripts,convert,version,help}
                        commands
    keygen              Generate signing key
    sign                Sign wheel
    unsign              Remove RECORD.jws from a wheel by truncating the zip
                        file. RECORD.jws must be at the end of the archive.
                        The zip file must be an ordinary archive, with the
                        compressed files and the directory in the same order,
                        and without any non-zip content after the truncation
                        point.
    verify              Verify a wheel. The signature will be verified for
                        internal consistency ONLY and printed. Wheel's own
                        unpack/install commands verify the manifest against
                        the signature and file contents.
    unpack              Unpack wheel
    install             Install wheels
    install-scripts     Install console_scripts
    convert             Convert egg or wininst to wheel
    version             Print version and exit
    help                Show this help

optional arguments:
  -h, --help            show this help message and exit
[keiya@sc097 ~]$ wget https://mirror.oxfordnanoportal.com/software/analysis/ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
--2018-09-21 18:01:52--  https://mirror.oxfordnanoportal.com/software/analysis/ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
mirror.oxfordnanoportal.com をDNSに問いあわせています... 178.79.175.200, 96.126.99.215, 106.187.40.102
mirror.oxfordnanoportal.com|178.79.175.200|:443 に接続しています... 接続しました。
HTTP による接続要求を送信しました、応答を待っています... 301 Moved Permanently
場所: https://apac.oxfordnanoportal.com/software/analysis/ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl [続く]
--2018-09-21 18:01:54--  https://apac.oxfordnanoportal.com/software/analysis/ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
apac.oxfordnanoportal.com をDNSに問いあわせています... 106.187.40.102
apac.oxfordnanoportal.com|106.187.40.102|:443 に接続しています... 接続しました。
HTTP による接続要求を送信しました、応答を待っています... 200 OK
長さ: 11014720 (11M)
`ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl' に保存中

100%[======================================>] 11,014,720  67.2M/s 時間 0.2s    

2018-09-21 18:01:54 (67.2 MB/s) - `ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl' へ保存完了 [11014720/11014720]

[keiya@sc097 ~]$ ls
backup              ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
data                resources
hello.sh.e45253942  workspace
hello.sh.o45253942
[keiya@sc097 ~]$ pip3 install ./ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl 
Processing ./ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
Collecting numpy>=1.15.0 (from ont-albacore==2.3.3)
  Downloading https://files.pythonhosted.org/packages/fe/94/7049fed8373c52839c8cde619acaf2c9b83082b935e5aa8c0fa27a4a8bcc/numpy-1.15.1-cp36-cp36m-manylinux1_x86_64.whl (13.9MB)
    100% |████████████████████████████████| 13.9MB 1.8MB/s 
Requirement already satisfied: python-dateutil in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from ont-albacore==2.3.3) (2.7.3)
Collecting progressbar33 (from ont-albacore==2.3.3)
  Downloading https://files.pythonhosted.org/packages/71/fc/7c8e01f41a6e671d7b11be470eeb3d15339c75ce5559935f3f55890eec6b/progressbar33-2.4.tar.gz
Requirement already satisfied: setuptools in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from ont-albacore==2.3.3) (40.0.0)
Requirement already satisfied: h5py in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from ont-albacore==2.3.3) (2.8.0)
Collecting ont-fast5-api>=0.4.1 (from ont-albacore==2.3.3)
  Downloading https://files.pythonhosted.org/packages/d8/09/3caed6b78be6a5ddddc12ef1e40d5fa53e5167edbfac22134e8b59b6d05c/ont_fast5_api-0.4.1-py2.py3-none-any.whl
Requirement already satisfied: six>=1.5 in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from python-dateutil->ont-albacore==2.3.3) (1.11.0)
Building wheels for collected packages: progressbar33
  Running setup.py bdist_wheel for progressbar33 ... done
  Stored in directory: /home/keiya/.cache/pip/wheels/3c/5a/22/73ae955a60c550ce36fae0f23cbb6d55bbf53123ee415f120c
Successfully built progressbar33
Installing collected packages: numpy, progressbar33, ont-fast5-api, ont-albacore
  Found existing installation: numpy 1.14.3
    Uninstalling numpy-1.14.3:
Could not install packages due to an EnvironmentError: [Errno 13] 許可がありません: '/usr/local/package/python/3.6.4/bin/f2py'
Consider using the `--user` option or check the permissions.

[keiya@sc097 ~]$ pip install --user ./ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl 
Processing ./ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
Collecting progressbar33 (from ont-albacore==2.3.3)
Collecting numpy>=1.15.0 (from ont-albacore==2.3.3)
  Using cached https://files.pythonhosted.org/packages/fe/94/7049fed8373c52839c8cde619acaf2c9b83082b935e5aa8c0fa27a4a8bcc/numpy-1.15.1-cp36-cp36m-manylinux1_x86_64.whl
Requirement already satisfied: h5py in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from ont-albacore==2.3.3) (2.8.0)
Collecting ont-fast5-api>=0.4.1 (from ont-albacore==2.3.3)
  Using cached https://files.pythonhosted.org/packages/d8/09/3caed6b78be6a5ddddc12ef1e40d5fa53e5167edbfac22134e8b59b6d05c/ont_fast5_api-0.4.1-py2.py3-none-any.whl
Requirement already satisfied: python-dateutil in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from ont-albacore==2.3.3) (2.7.3)
Requirement already satisfied: setuptools in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from ont-albacore==2.3.3) (40.0.0)
Requirement already satisfied: six in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from h5py->ont-albacore==2.3.3) (1.11.0)
Installing collected packages: progressbar33, numpy, ont-fast5-api, ont-albacore
Successfully installed numpy-1.15.1 ont-albacore-2.3.3 ont-fast5-api-0.4.1 progressbar33-2.4
[keiya@sc097 ~]$ python
Python 3.6.4 (default, Mar 14 2018, 13:09:41) 
[GCC 4.9.3] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> quit()
[keiya@sc097 ~]$ read
read                 readcd               readom
read_fasta_file.pl   readelf              readonly
readahead            readlink             readprofile
readahead-collector  readmult             readseq
readarray            readmzXML            
[keiya@sc097 ~]$ read_fast5_basecaller.py --flowcell FLO-MIN107 --kit SQK-LSK108 --barcoding --output_format fast5,fastq --input directory_of_fast5_files --save_path directory_for_output --worker_threads 4
bash: read_fast5_basecaller.py: コマンドが見つかりません
いくつかのコマンドは環境変数 PATH に記述のない /usr/local/package/ にあります。
[keiya@sc097 ~]$ pip3 install --user ./ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl 
Requirement already satisfied: ont-albacore==2.3.3 from file:///yshare2/home/keiya/ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl in ./.local/lib/python3.6/site-packages (2.3.3)
Requirement already satisfied: h5py in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from ont-albacore==2.3.3) (2.8.0)
Requirement already satisfied: ont-fast5-api>=0.4.1 in ./.local/lib/python3.6/site-packages (from ont-albacore==2.3.3) (0.4.1)
Requirement already satisfied: progressbar33 in ./.local/lib/python3.6/site-packages (from ont-albacore==2.3.3) (2.4)
Requirement already satisfied: numpy>=1.15.0 in ./.local/lib/python3.6/site-packages (from ont-albacore==2.3.3) (1.15.1)
Requirement already satisfied: python-dateutil in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from ont-albacore==2.3.3) (2.7.3)
Requirement already satisfied: setuptools in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from ont-albacore==2.3.3) (40.0.0)
Requirement already satisfied: six in /usr/local/package/python/3.6.4/lib/python3.6/site-packages (from h5py->ont-albacore==2.3.3) (1.11.0)
[keiya@sc097 ~]$ read
read                 readcd               readom
read_fasta_file.pl   readelf              readonly
readahead            readlink             readprofile
readahead-collector  readmult             readseq
readarray            readmzXML            
[keiya@sc097 ~]$ ls
backup              ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
data                resources
hello.sh.e45253942  workspace
hello.sh.o45253942
[keiya@sc097 ~]$ cd .
./               .bash_profile    .local/          .viminfo
../              .bashrc          .python_history  
.bash_history    .cache/          .ssh/            
[keiya@sc097 ~]$ cd .local/
bin/ lib/ 
[keiya@sc097 ~]$ cd .local/bin/
__pycache__/               paired_read_basecaller.py
f2py                       read_fast5_basecaller.py
full_1dsq_basecaller.py    
[keiya@sc097 ~]$ .local/bin/read_fast5_basecaller.py 
^C
^CTraceback (most recent call last):
  File "/home/keiya/.local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
    from . import multiarray
ImportError: PyCapsule_Import could not import module "datetime"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File ".local/bin/read_fast5_basecaller.py", line 69, in <module>
    from albacore.input_utils import list_input_files
  File "/home/keiya/.local/lib/python3.6/site-packages/albacore/input_utils.py", line 4, in <module>
    import numpy as np
  File "/home/keiya/.local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
    from . import add_newdocs
  File "/home/keiya/.local/lib/python3.6/site-packages/numpy/add_newdocs.py", line 13, in <module>
    from numpy.lib import add_newdoc
  File "/home/keiya/.local/lib/python3.6/site-packages/numpy/lib/__init__.py", line 8, in <module>
    from .type_check import *
  File "/home/keiya/.local/lib/python3.6/site-packages/numpy/lib/type_check.py", line 11, in <module>
    import numpy.core.numeric as _nx
  File "/home/keiya/.local/lib/python3.6/site-packages/numpy/core/__init__.py", line 26, in <module>
    raise ImportError(msg)
ImportError: 
Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control).  Otherwise reinstall numpy.

Original error was: PyCapsule_Import could not import module "datetime"

[keiya@sc097 ~]$ printenc
bash: printenc: コマンドが見つかりません
いくつかのコマンドは環境変数 PATH に記述のない /usr/local/package/ にあります。
[keiya@sc097 ~]$ printenv
MKLROOT=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/mkl
MANPATH=/usr/local/package/python/3.6.4/share/man:/home/geadmin/N1GE/man:/opt/intel/Compiler/18.0.3/20180410/man/common:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/mpi/man:/opt/intel/Compiler/18.0.3/20180410/documentation_2018/ja/debugger/gdb-ia/man:/opt/intel/Compiler/18.0.3/20180410/documentation_2018/ja/debugger/gdb-igfx/man:/usr/local/share/man:/usr/local/man:/usr/share/man/overrides:/usr/share/man/en:/usr/share/man:/usr/man
HOSTNAME=sc097
IPPROOT=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/ipp
INTEL_LICENSE_FILE=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/licenses:/opt/intel/licenses:/home/keiya/intel/licenses
TERM=xterm-256color
SHELL=/bin/bash
HISTSIZE=1000
GDBSERVER_MIC=/opt/intel/Compiler/18.0.3/20180410/debugger_2018/gdb/targets/intel64/x200/bin/gdbserver
SSH_CLIENT=172.28.4.132 45366 33767
LIBRARY_PATH=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/ipp/lib/intel64:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64_lin:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64_lin:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/tbb/lib/intel64/gcc4.7:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/tbb/lib/intel64/gcc4.7:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/daal/lib/intel64_lin:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/tbb/lib/intel64_lin/gcc4.4
SGE_CELL=default
QTDIR=/usr/lib64/qt-3.3
QTINC=/usr/lib64/qt-3.3/include
SSH_TTY=/dev/pts/0
USER=keiya
LD_LIBRARY_PATH=/usr/local/package/python/3.6.4/lib:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/mpi/intel64/lib:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/mpi/mic/lib:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/ipp/lib/intel64:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64_lin:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64_lin:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/tbb/lib/intel64/gcc4.7:/opt/intel/Compiler/18.0.3/20180410/debugger_2018/iga/lib:/opt/intel/Compiler/18.0.3/20180410/debugger_2018/libipt/intel64/lib:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/daal/lib/intel64_lin:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/tbb/lib/intel64_lin/gcc4.4:/usr/local/lib64:/usr/local/lib
LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
PSTLROOT=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/pstl
CPATH=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/ipp/include:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/mkl/include:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/pstl/include:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/tbb/include:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/tbb/include:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/daal/include
TMOUT=21600
COLUMNS=80
NLSPATH=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64_lin/locale/%l_%t/%N:/opt/intel/Compiler/18.0.3.222/20180410/debugger_2018/gdb/intel64/share/locale/%l_%t/%N
MAIL=/var/spool/mail/keiya
PATH=/usr/local/package/python/3.6.4/bin:/home/geadmin/N1GE/bin/lx-amd64:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/bin/intel64:/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutils/bin
TBBROOT=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/tbb
PWD=/home/keiya
_LMFILES_=/etc/modulefiles/intel_env:/etc/modulefiles/gcc:/etc/modulefiles/python/3.6
GDB_CROSS=/opt/intel/Compiler/18.0.3/20180410/debugger_2018/gdb/intel64/bin/gdb-ia
KDE_IS_PRELINKED=1
LANG=ja_JP.UTF-8
MODULEPATH=/home/keiya/modulefiles:/usr/share/Modules/modulefiles:/etc/modulefiles
SGE_ROOT=/home/geadmin/N1GE
LOADEDMODULES=intel_env:gcc:python/3.6
KDEDIRS=/usr
LINES=67
DAALROOT=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/daal
JAVA_TOOL_OPTIONS=-XX:+UseSerialGC -Xmx64m -Xms32m
CXX=/usr/local/bin/g++
MPM_LAUNCHER=/opt/intel/Compiler/18.0.3/20180410/debugger_2018/mpm/mic/bin/start_mpm.sh
HISTCONTROL=ignoredups
INTEL_PYTHONHOME=/opt/intel/Compiler/18.0.3/20180410/debugger_2018/python/intel64
SHLVL=1
HOME=/home/keiya
FC=/usr/local/bin/gfortran
LOGNAME=keiya
QTLIB=/usr/lib64/qt-3.3/lib
CVS_RSH=ssh
CLASSPATH=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/mpi/intel64/lib/mpi.jar:/opt/intel/Compiler/18.0.3.222/20180410/compilers_and_libraries_2018.3.222/linux/daal/lib/daal.jar
SSH_CONNECTION=172.28.4.132 45366 172.28.2.97 33767
MODULESHOME=/usr/share/Modules
PKG_CONFIG_PATH=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/mkl/bin/pkgconfig
LESSOPEN=||/usr/bin/lesspipe.sh %s
INFOPATH=/opt/intel/Compiler/18.0.3/20180410/documentation_2018/ja/debugger/gdb-ia/info:/opt/intel/Compiler/18.0.3.222/20180410/documentation_2018/ja/debugger/gdb-igfx/info
SGE_CLUSTER_NAME=p6444
CC=/usr/local/bin/gcc
G_BROKEN_FILENAMES=1
I_MPI_ROOT=/opt/intel/Compiler/18.0.3/20180410/compilers_and_libraries_2018.3.222/linux/mpi
BASH_FUNC_module()=() {  eval `/usr/bin/modulecmd bash $*`
}
_=/usr/bin/printenv
[keiya@sc097 ~]$ export PATH="$PATH:/home/keiya/local/bin/"
[keiya@sc097 ~]$ read_fasta_file.pl 
.bash_history
.bash_profile
.bashrc
.cache/
.local/
.python_history
.ssh/
.viminfo
backup/
data/
hello.sh.e45253942
hello.sh.o45253942
ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
resources/
workspace/
[keiya@sc097 ~]$ read_fasta_file.pl 
.bash_history
.bash_profile
.bashrc
.cache/
.local/
.python_history
.ssh/
.viminfo
backup/
data/
hello.sh.e45253942
hello.sh.o45253942
ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
resources/
workspace/
[keiya@sc097 ~]$ read_fasta_file.pl 
.bash_history
.bash_profile
.bashrc
.cache/
.local/
.python_history
.ssh/
.viminfo
backup/
data/
hello.sh.e45253942
hello.sh.o45253942
ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
resources/
workspace/
[keiya@sc097 ~]$ pwd
/home/keiya
[keiya@sc097 ~]$ cd .
[keiya@sc097 ~]$ ls
backup              ont_albacore-2.3.3-cp36-cp36m-manylinux1_x86_64.whl
data                resources
hello.sh.e45253942  workspace
hello.sh.o45253942
[keiya@sc097 ~]$ cd .local/bin
[keiya@sc097 bin]$ ls
__pycache__  full_1dsq_basecaller.py    read_fast5_basecaller.py
f2py         paired_read_basecaller.py
[keiya@sc097 bin]$ pwd
/home/keiya/.local/bin
[keiya@sc097 bin]$ export PATH="$PATH:/home/keiya/.local/bin/"
[keiya@sc097 bin]$ read_fast
read_fast5_basecaller.py  read_fasta_file.pl        
[keiya@sc097 bin]$ cd home/keiya
-bash: cd: home/keiya: そのようなファイルやディレクトリはありません
[keiya@sc097 bin]$ cd /home/keiya/workspace/
[keiya@sc097 workspace]$ l
bash: l: コマンドが見つかりません
いくつかのコマンドは環境変数 PATH に記述のない /usr/local/package/ にあります。
[keiya@sc097 workspace]$ ls
data_kunigo           hello         kunigo_pptx.tar.gz
data_pathogen_detect  hello_python  script
[keiya@sc097 workspace]$ mkdir data_zuimakuenn
[keiya@sc097 workspace]$ cd data_zuimakuenn/
[keiya@sc097 data_zuimakuenn]$ ls /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION
1st_library  2nd_library
[keiya@sc097 data_zuimakuenn]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION
cp: missing destination file operand after `/yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION'
詳しくは `cp --help' を実行して下さい.
[keiya@sc097 data_zuimakuenn]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION satake-zuimakuien/MinION
cp: omitting directory `/yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION'
[keiya@sc097 data_zuimakuenn]$ cp -r /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION satake-zuimakuien/MinION
cp: ディレクトリ `satake-zuimakuien/MinION' を作成できません: そのようなファイルやディレクトリはありません
[keiya@sc097 data_zuimakuenn]$ cp -r /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION satake-zuimakuien/MinION/
cp: ディレクトリ `satake-zuimakuien/MinION/' を作成できません: そのようなファイルやディレクトリはありません
[keiya@sc097 data_zuimakuenn]$ mkdir MinION
[keiya@sc097 data_zuimakuenn]$ cp -r /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION satake-zuimakuien/MinION/
cp: ディレクトリ `satake-zuimakuien/MinION/' を作成できません: そのようなファイルやディレクトリはありません
[keiya@sc097 data_zuimakuenn]$ cp -r /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION satake-zuimakuien/MinION
cp: ディレクトリ `satake-zuimakuien/MinION' を作成できません: そのようなファイルやディレクトリはありません
[keiya@sc097 data_zuimakuenn]$ cp -r /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/MinION MinION
[keiya@sc097 data_zuimakuenn]$ cp -r /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/Illumina/180105_Hiseq3000 satake-zuimakuien/Illumina/180105_Hiseq3000
cp: ディレクトリ `satake-zuimakuien/Illumina/180105_Hiseq3000' を作成できません: そのようなファイルやディレクトリはありません
[keiya@sc097 data_zuimakuenn]$ mkdir Illumina
[keiya@sc097 data_zuimakuenn]$ mkdir Illumina/180105_Hiseq3000
[keiya@sc097 data_zuimakuenn]$ cp -r /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/Illumina/180105_Hiseq3000 satake-zuimakuien/Illumina/180105_Hiseq3000
cp: ディレクトリ `satake-zuimakuien/Illumina/180105_Hiseq3000' を作成できません: そのようなファイルやディレクトリはありません
[keiya@sc097 data_zuimakuenn]$ ls
Illumina  MinION
[keiya@sc097 data_zuimakuenn]$ cp -r /yshare2/home/horiuchi/nanopore/kaneko-san/satake-sensei/Illumina/180105_Hiseq3000 Illumina/180105_Hiseq3000
[keiya@sc097 data_zuimakuenn]$ wheel --help
usage: wheel [-h]
             {keygen,sign,unsign,verify,unpack,install,install-scripts,convert,version,help}
             ...

positional arguments:
  {keygen,sign,unsign,verify,unpack,install,install-scripts,convert,version,help}
                        commands
    keygen              Generate signing key
    sign                Sign wheel
    unsign              Remove RECORD.jws from a wheel by truncating the zip
                        file. RECORD.jws must be at the end of the archive.
                        The zip file must be an ordinary archive, with the
                        compressed files and the directory in the same order,
                        and without any non-zip content after the truncation
                        point.
    verify              Verify a wheel. The signature will be verified for
                        internal consistency ONLY and printed. Wheel's own
                        unpack/install commands verify the manifest against
                        the signature and file contents.
    unpack              Unpack wheel
    install             Install wheels
    install-scripts     Install console_scripts
    convert             Convert egg or wininst to wheel
    version             Print version and exit
    help                Show this help

optional arguments:
  -h, --help            show this help message and exit
[keiya@sc097 data_zuimakuenn]$ packet_write_wait: Connection to 202.175.151.55 port 22: Broken pipe
keiyakanekonoMac-mini:~ keiya11$ 
  [復元日時2018/09/23 12:38:13]
Last login: Sun Sep 23 12:38:09 on console
keiyakanekonoMac-mini:~ keiya11$ cd code\ contest/
keiyakanekonoMac-mini:code contest keiya11$ mkdir ABC110
keiyakanekonoMac-mini:code contest keiya11$ cd ABC110/
keiyakanekonoMac-mini:ABC110 keiya11$ vim abc1110_a
keiyakanekonoMac-mini:ABC110 keiya11$ re abc1110_a 
-bash: re: command not found
keiyakanekonoMac-mini:ABC110 keiya11$ rm abc1110_a 
keiyakanekonoMac-mini:ABC110 keiya11$ vim abc110_a.cpp
keiyakanekonoMac-mini:ABC110 keiya11$ gpp abc110_a.cpp 
-bash: gpp: command not found
keiyakanekonoMac-mini:ABC110 keiya11$ g++ abc110_a.cpp 
abc110_a.cpp:16:15: error: expected ';' after expression
        cout << money
                     ^
                     ;
1 error generated.
keiyakanekonoMac-mini:ABC110 keiya11$ vim abc110_a.cpp 
keiyakanekonoMac-mini:ABC110 keiya11$ g++ abc110_a.cpp 
keiyakanekonoMac-mini:ABC110 keiya11$ a.exe
-bash: a.exe: command not found
keiyakanekonoMac-mini:ABC110 keiya11$ ls
a.out		abc110_a.cpp
keiyakanekonoMac-mini:ABC110 keiya11$ a.out
-bash: a.out: command not found
keiyakanekonoMac-mini:ABC110 keiya11$ ./a.out
1 3 2
33keiyakanekonoMac-mini:ABC110 keiya11$ vim a
a.out         abc110_a.cpp  
keiyakanekonoMac-mini:ABC110 keiya11$ vim abc110_a.cpp 

  1 #include <iostream>
  2 using namespace std;
  3 
  4 int main(){
  5         int a,b,c;
  6         cin >> a >> b >> c;
  7 
  8         //find max
  9         int money;
 10         if(a > b && a > c){
 11                 money = a * 10 + b + c;
 12         }else if(b > c){
 13                 money = b * 10 + a + c;
 14         }else money = a + b + c * 10;
 15 
 16         cout << money;
 17 }

Compiler output:
a.cc:1:24: error: invalid digit "8" in octal constant
    1 | Last login: Fri Sep 21 08:45:55 on console
      |                        ^~
a.cc:3:26: warning: multi-character literal with 26 characters exceeds 'int' size of 4 bytes
    3 | Enter passphrase for key '/Users/keiya11/.ssh/id_rsa':
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
a.cc:4:43: error: too many decimal points in number
    4 | Last login: Tue Sep 18 15:36:33 2018 from 157.82.243.52
      |                                           ^~~~~~~~~~~~~
a.cc:12:43: error: stray '`' in program
   12 | |   ||   |   ||   |||   | |    / /  |-- | ` |  |
      |                                           ^
a.cc:13:1: error: stray '`' in program
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      | ^
a.cc:13:6: error: stray '`' in program
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |      ^
a.cc:13:9: warning: multi-character character constant [-Wmultichar]
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |         ^~~~~~
a.cc:13:15: error: stray '`' in program
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |               ^
a.cc:13:20: error: stray '`' in program
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |                    ^
a.cc:13:21: error: stray '`' in program
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |                     ^
a.cc:13:25: warning: multi-character character constant [-Wmultichar]
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |                         ^~~~~~
a.cc:13:32: error: stray '`' in program
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |                                ^
a.cc:13:34: error: stray '`' in program
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |                                  ^
a.cc:13:37: warning: missing terminating ' character
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |                                     ^
a.cc:13:37: error: missing terminating ' character
   13 | `---|`--'`---'`---|``   ' `--' `-`- '`- `-  `-
      |                                     ^~~~~~~~~~
a.cc:14:15: error: stray '`' in program
   14 |     |         `---' https://supcom.hgc.jp/internal/mediawiki/id/357
      |               ^
a.cc:14:19: warning: missing terminating ' character
   14 |     |         `---' https://supcom.hgc.jp/internal/mediawiki/id/357
      |                   ^
a.cc:14:19: error: missing terminating ' character
   14 |     |         `---' https://supcom.hgc.jp/internal/mediawiki/id/357
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
a.cc:15:33: error: stray '@' in program
   15 | [A login node of SHIROKANE keiya@slogin2:~]$ qlogin
      |                                 ^
a.cc:20:7: error: stray '@' in program
   20 | [keiya@sc113 ~]$ ls
      |       ^
a.cc:22:7: error: stray '@' in program
   22 | [keiya@sc113 ~]$ cd data
      |       ^
a.cc:23:7: error: stray '@' in program
   23 | [keiya@sc113 data]$ ls
      |       ^
a.cc:25:7: error: stray '@' in program
   25 | [keiya@sc113 data]$ cd ..
      |       ^
a.cc:26:7: error: stray '@' in program
   26 | [keiya@sc113 ~]$ cd workspace/
      |       ^
a.cc:27:7: error: stray '@' in program
   27 | [keiya@sc113 workspace]$ ls
      |       ^
a.cc:29:7: error: stray '@' in program
   29 | [keiya@sc113 workspace]$ mkdir data_pathogen_detect
      |       ^
a.cc:30:7: error: stray '@' in program
   30 | [keiya@sc113 workspace]$ cd data_pathogen_detect/
      |       ^
a.cc:31:7: error: stray '@' in program
   31 | [keiya@sc113 data_pathogen_detect]$ mkdir SA_HI_16Samplicon_minion_0912_data
      |       ^
a.cc:32:7: error: stray '@' in program
   32 | [keiya@sc113 data_pathogen_detect]$ cd SA_HI_16Samplicon_minion_0912_data/
      |       ^
a.cc:33:7: error: stray '@' in program
   33 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/sequencing_summary.txt ./
      |       ^
a.cc:33:127: error: too many decimal points in number
   33 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/sequencing_summary.txt ./
      |                                                                                                                               ^~~~
a.cc:34:7: error: stray '@' in program
   34 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ ls
      |       ^
a.cc:36:7: error: stray '@' in program
   36 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq
      |       ^
a.cc:36:127: error: too many decimal points in number
   36 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq
      |                                                                                                                               ^~~~
a.cc:37:44: error: stray '`' in program
   37 | cp: missing destination file operand after `/yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq'
      |                                            ^
a.cc:37:118: error: too many decimal points in number
   37 | cp: missing destination file operand after `/yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq'
      |                                                                                                                      ^~~~
a.cc:37:128: warning: missing terminating ' character
   37 | cp: missing destination file operand after `/yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq'
      |                                                                                                                                ^
a.cc:37:128: error: missing terminating ' character
a.cc:38:10: error: stray '`' in program
   38 | 詳しくは `cp --help' を実行して下さい.
      |          ^
a.cc:38:20: warning: missing terminating ' character
   38 | 詳しくは `cp --help' を実行して下さい.
      |                    ^
a.cc:38:20: error: missing terminating ' character
   38 | 詳しくは `cp --help' を実行して下さい.
      |                    ^~~~~~~~~~~~~~~~~~~
a.cc:39:7: error: stray '@' in program
   39 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq
      |       ^
a.cc:39:127: error: too many decimal points in number
   39 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp /yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq
      |                                                                                                                               ^~~~
a.cc:40:44: error: stray '`' in program
   40 | cp: missing destination file operand after `/yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq'
      |                                            ^
a.cc:40:118: error: too many decimal points in number
   40 | cp: missing destination file operand after `/yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq'
      |                                                                                                                      ^~~~
a.cc:40:128: warning: missing terminating ' character
   40 | cp: missing destination file operand after `/yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq'
      |                                                                                                                                ^
a.cc:40:128: error: missing terminating ' character
a.cc:41:10: error: stray '`' in program
   41 | 詳しくは `cp --help' を実行して下さい.
      |          ^
a.cc:41:20: warning: missing terminating ' character
   41 | 詳しくは `cp --help' を実行して下さい.
      |                    ^
a.cc:41:20: error: missing terminating ' character
   41 | 詳しくは `cp --help' を実行して下さい.
      |                    ^~~~~~~~~~~~~~~~~~~
a.cc:42:7: error: stray '@' in program
   42 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq ./
      |       ^
a.cc:42:126: error: too many decimal points in number
   42 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_data]$ cp yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq ./
      |                                                                                                                              ^~~~
a.cc:43:17: error: stray '`' in program
   43 | cp: cannot stat `yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq': そのようなファイルやディレクトリはありません
      |                 ^
a.cc:43:90: error: too many decimal points in number
   43 | cp: cannot stat `yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq': そのようなファイルやディレクトリはありません
      |                                                                                          ^~~~
a.cc:43:100: warning: missing terminating ' character
   43 | cp: cannot stat `yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq': そのようなファイルやディレクトリはありません
      |                                                                                                    ^
a.cc:43:100: error: missing terminating ' character
   43 | cp: cannot stat `yshare2/home/horiuchi/nanopore/kaneko-san/20180913_0813_SA_HI/albacore_2.2.7/1d.fq': そのようなファイルやディレクトリはありません
      |                                                                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
a.cc:44:7: error: stray '@' in program
   44 | [keiya@sc113 SA_HI_16Samplicon_minion_0912_d