So if any other residue matches the identical score then a collision has occurred. If another residue has a greater than or equal to matching score and these do not match then a collision has occurred. If any of these give a top score for matching or identical scores then a collision has occured. Output file format An image of the alignment is displayed. Data files Prettyplot uses a comparison matrix file to calculate similarity to the consensus.
Users can provide their own data files in their own directories.
Diagnostic Error Messages None. It exits with status 0 unless an error is reported. Displays information on the currently available databases showfeat Show features of a sequence showseq Display a sequence with features, translation etc textsearch Search sequence documentation text. Gert Vriend added the star marking. This program is intended to be used by everyone and everything, from naive users to embedded scripts.