In the alignment format, positions having the same residue as consensus B are represented by a '-'. For isolates having multiple clones, users have the option of retrieving all clones or representative consensus sequences. Complete treatment history, one of the four 'Additional Output Options' available, is shown above, and includes drug regimens, the order in which they were received, and the duration in weeks of each course. The page returned contains a header that provides a summary of the query parameters, the number of isolates, patients, and references satisfying the query parameters, and a dialog box 'View Composite Alignment'. The 'View Composite Alignment' dialog box allows users to retrieve a presentation of the sequences with percentages or numbers of mutation frequencies.
Users have the option of excluding single occurences of the different mutations.
The top line represents the consensus fo this group of isolates. A dash means the amino acid at that position resembles the consensus. An 'X' stands for an undetermined amino acid at that position. A dot stands for an unsequenced position. Composite Alignment Query Results A summarized version for viewing the results of queries.