Write down the path of the shadow line on the back face of the lattice. Show answer to Question 5 6. Let the hyperlattice be spanned by sequences VSNS, SNA, and AS, as in Fig. No alignment path can exclusively travel along edges on the surface of the lattice. Every path starting at the bottom-left of the lattice corresponds to exactly one alignment.
Some alignments can correspond to more than one path through the lattice.
1.3 Calculation of a Multiple Alignment by Standard Dynamic Programming 7. Assume that in Fig. Show answer to Question 7 8. Again, take a look at Fig. Using unit costs, please answer the following questions.