If LaserGene Databases does not appear in the popdown menu, check to make sure the mounting procedure above was done. Choose Show Available Methods from the Analysis menu. Choose Prosite Database from the Patterns submenu under the More Methods menu. Double-click Patterns Prosite Database within the Method Curtain . This allows you to change the parameters for the pattern search.
Threshold determines the match stringency.
Lower this threshold to find nonidentical matches. Click the Show Database button. This brings up the database browser for the Prosite database. The format is similar to GeneMan allowing you to browse at a detail of oneline description, partially expanded, or fully expanded. Close the Prosite database and click the triangle icon for Patterns Prosite Database.