MA , a library of routines for dynamic memory allocation. Source code is available. MakePSSM , creates a Position Specific Scoring Matrix from a multiple sequence file. I dentification R esource database. In particular, take a look at toms and quadpack .
Source code is available.
SAPS , evaluates by statistical criteria a wide variety of protein sequence properties. SAGA , a versatile tool for multiple sequence alignments. SN , fast database searching program that aligns local regions of pairs of nucleic acid sequences. ST , fast database searching program that compares a protein sequence against translated sequences from a nucleic acid sequence data bank.