The horizontal scale represents the cDNA length in kb. The ORFs and untranslated regions are shown by solid and open boxes, respectively. The positions of the first ATG codons are indicated by solid and open triangles to indicate respectively those that lie within and outside the confines of Kozak's rule. Alu sequences and other repetitive sequences detected in this way are displayed by dotted and hatched boxes, respectively. The graphic outputs of the GeneMark-RC analysis are displayed.
Vertical lines given in the graphs indicate the positions of termination codons.
If you would like to know more about the GeneMark-RC analysis, please read the paper by Hirosawa et al. Features of the predicted protein sequence This section describes the features of the predicted protein sequence. Therefore, some of the predicted protein sequences are not derived from the cloned cDNA sequence but from the revised cDNA sequence. To avoid any confusion, this section states whether or not the predicted protein sequence is obtained by conceptual translation of the revised cDNA sequence. Top 5 entries given the expectation value smaller than 0.001 in nr database and HUGE database are shown.