Table of Contents Previous Chapter 7. Cluster alignments Alignment of several related sequences, maximising the display of homology, is used to highlight conserved and diverging regions. That method takes a lot of time, and can introduce some spectacular errors.
Some sequences happen to be arranged so that repeated gapping in pairs always introduces new gaps.
We first define the set of sequences we wish to align. You will receive a message when the job is completed, or you might log off and come back later. Always check the LOG file to see if the job ran correctly. We will do it a different way this time. The log file.