Table of Contents Previous Chapter 10. Translating and Listing Nucleic Acid Sequences 1. In this chapter we deal with producing simple listings from nucleotide sequences. We can list the sequence alone, in single or doubled stranded format or with translations to protein. The translations can be of all six phases, all open reading frames, or of specified segments.
Translations can use the one letter or three letter codes.
In addition we can produce files containing only the protein translations, and which are suitable for processing by other programs. Again the positions of the translated segments can be defined on the keyboard, read from a feature table, or be all open reading frames. Methods 2.1 Listing the sequence with all six reading frames translated 1. Where to list from. Where to list to.