This Tranformer takes a set of signaling components and transforms them into a boolen network representation consiting of a set of wiring and rules. This Tranformer takes a set of mechanistic signaling reactions and transforms them into a boolean network representation consiting of a set of wiring and rules. This Transformer takes a set of semantic signaling Reactions and transforms them into a boolen network representation consiting of a set of wiring and rules. Wiring Wiring is a data structure to encapsulates the k input wirings to a node. The transform package is used to transform the bipartite transpath graph to other graph representations.
Molecules are the nodes of the boolean network.
For detailed thoughts how to map these models to each other see the documentation.