Make your own kinemages from the pdb coordinates below using free software called Prekin. Both programs and full instructions can be obtained from the Protein Society Gopher Space. The program MAGE is used to view them. Context-dependent secondary structure formation of a designed protein sequence. Minor DL Jr, Kim PS Protein secondary structures have been viewed as fundamental building blocks for protein folding, structure and design.
Previous studies indicate that.
Our results demonstrate that non-local interactions can determine the secondary structure of peptide sequences of substantial length. They also support views of protein folding that favour tertiary interactions as dominant determinants of structure. The spatial coordinates for mouse prion have been submitted to the protein structure database at Brookhaven . Secondary structure analysis, computer modeling, and structural biophysics methods support this hypothesis. This would arise from folding of the polypeptide in which there are turns in the middle of both the H1 and H2 domains.