This utility is a useful and fast way to format your sequence in combination with Open Reading Frame analysis. Identify ORFs within DNA sequence data. Graphical Open Reading Frames Analysis at NIH Graphically identify ORFs within DNA sequence data. A neural network based program to find possible transcription promoters. Up to 10 genetic elements encoded within the sequence can be for presented in the final output.
Output requires a Postscript viewer.
From Pensylvania State University, Department of Biochemistry and Molecular Biology. RepeatMasker Screens DNA sequences for interspersed repeats and low complexity DNA sequences. This Java applet analyzes a codon usage table and lists the codons for each amino acid and their relative abundance. This way of presenting a codon usage table makes comparing two tables much easier than with the usual form of the Codon Usage Database. In addition, a parser which allows an overview of the HSP hits aligned against your query sequence has been incorporated.