Headphones will never give the visceral impact of good speakers in a good room. If you are not careful, you will tend to equalize the deep bass far too loud in your mix. You must develop an intuitive sense as to how the bottom end will ultimately sound with a variety of playback systems. You could add substantial amounts of the deepest bass, but you will never hear it on a those little portable systems. Experience will tell what is the correct low end characteristic is desirable.
Many engineers have their individual ways to make the two fit together and sound correct in the mix.
This can be done when miking the bass drum. Or it can be done after the fact with tools like equalization, compression, etc. The same holds true for the bass guitar. This is why many engineers mike the bass amp in addition to the direct sound. Experience works to your advantage here.